BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048830
         (551 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/562 (67%), Positives = 445/562 (79%), Gaps = 15/562 (2%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRA 62
           LKK   +V +N   Q H      +LN  A+S+S SL YAQ LF  I NPQTQAWNS+IR 
Sbjct: 25  LKKIQAHVIVN-GLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQAWNSIIRG 83

Query: 63  FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER 122
           FAQS SP+QAIFYYN ML  S+S PDTFTF+FTLKACER+KAL KC+E+HG +IR+GYER
Sbjct: 84  FAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGSIIRTGYER 143

Query: 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182
            VVV T L+R Y  NG +E AR VFDNMPERDLV+WN++ISCY+QA +H EAL++Y+ MR
Sbjct: 144 DVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYMR 203

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
            E+VG+DGFTLV LLSSC+HVGALNMG+ LHRIA E G + +V+VGNAL+DMYAKCG+LD
Sbjct: 204 NENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSLD 263

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A  VF+ M  RD  +WNSMIVG+GVHG GDEAI FF QML AG  P+SI FLGLLCGCS
Sbjct: 264 GALEVFNGM-PRDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCS 322

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLW 361
           HQGLVEEGVE+FH M S++N+KPGIKHYGC+VD+YGRAGKLEKALE+I  S    DPVLW
Sbjct: 323 HQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLW 382

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
           R LL S KIH+NV IGEIAM+NL QL A +AGD VLLATIYA   DE+GVAR RKLIK  
Sbjct: 383 RILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATIYAGANDEQGVARMRKLIKKQ 442

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
           GIKTTPGWSWIE+ +QVH+FVVDDKSHPD++MIY+KLEE+ H+A   GY +D+S     G
Sbjct: 443 GIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKATMAGYVEDKSQFIFHG 502

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
           S SE+ LE SS YHSEKLAIAFGLA TP+GTSLRIVKNLR            S A++RD+
Sbjct: 503 SCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCHEFTKFVSRAFNRDI 562

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           IVRDR+R+HHF+ GLCSC DYW
Sbjct: 563 IVRDRLRFHHFKGGLCSCRDYW 584


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/573 (65%), Positives = 453/573 (79%), Gaps = 33/573 (5%)

Query: 11  GLNKARQAHEIHGEWLLNSY--------------AISVSSSLSYAQLLFNQIQNPQTQAW 56
           G N  R+ H+IH   L+N Y              A+SVS SL+YAQL+F++I NPQT AW
Sbjct: 32  GCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAW 91

Query: 57  NSLIRAFAQSLSPLQ--AIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           NS+IR F+QS SPLQ  AI +YNHML AS +RPDT+TF+F LKACE  K   KC+E+HGF
Sbjct: 92  NSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGF 151

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           +IR GY++ VV+ TNL+R YA NG+IE A  VF+ MP RDLVSWNS+ISCY Q   H EA
Sbjct: 152 IIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEA 211

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           LK+Y++MR  +VG DGFTLV LLSSCAHVGAL+MG+ +HR A E   VE+++VGNAL+DM
Sbjct: 212 LKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDM 271

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAKCG+L SA  +F+ M KRDV +WNSMIVGYGVHGRGDEAI+FF  MLMAG  P+SITF
Sbjct: 272 YAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITF 331

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           LGLLCGCSHQGLV+EGV+YFHMM S +NLKPGIKHYGC+VDL+GRAGKL++ALEVI  SS
Sbjct: 332 LGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIR-SS 390

Query: 355 PS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           PS  DPVLWRTLLGSCKIHRNVEIGE+AM+NLVQL +  AGD VLL+ IYA  KD +GVA
Sbjct: 391 PSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVA 450

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           R RKLI+S GIKTTPGWSWIE+G+QVH+FVVDDKSHPD+  IYRKLEE++HRA  +GY  
Sbjct: 451 RMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAM 510

Query: 473 DE-SLVAVSGSSSEDFL-EKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
           +E SLVA   S+++++  E S++YHSEKLAIA+GLA TP+GTSL IVKNLR         
Sbjct: 511 EESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFT 570

Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              S+A+ R++IVRDRVR+HHF+ G CSC ++W
Sbjct: 571 KFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 128/281 (45%), Gaps = 9/281 (3%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR--GYAANGVIEAARSVFDNMPER 153
           L+ C  ++ L+K   +H  ++ +GY+    +S  L+     + +G +  A+ VF  +   
Sbjct: 30  LQGCNSMRKLHK---IHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNP 86

Query: 154 DLVSWNSIISCYTQ--ASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
              +WNS+I  ++Q  +   L+A+  Y  M        D +T   LL +C          
Sbjct: 87  QTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCR 146

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H      G+ + V +   L+  YA  G +++A  VF  M  RD++SWNSMI  Y   G
Sbjct: 147 EVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTG 206

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
             +EA+  + QM ++    D  T + LL  C+H G +  GV+  H       L   I   
Sbjct: 207 LHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQ-MHRFAGERRLVENIFVG 265

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
             L+D+Y + G L  AL + N+    D   W +++    +H
Sbjct: 266 NALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVH 306


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/573 (65%), Positives = 453/573 (79%), Gaps = 33/573 (5%)

Query: 11  GLNKARQAHEIHGEWLLNSY--------------AISVSSSLSYAQLLFNQIQNPQTQAW 56
           G N  R+ H+IH   L+N Y              A+SVS SL+YAQL+F++I NPQT AW
Sbjct: 14  GCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAW 73

Query: 57  NSLIRAFAQSLSPLQ--AIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           NS+IR F+QS SPLQ  AI +YNHML AS +RPDT+TF+F LKACE  K   KC+E+HGF
Sbjct: 74  NSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGF 133

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           +IR GY++ VV+ TNL+R YA NG+IE A  VF+ MP RDLVSWNS+ISCY Q   H EA
Sbjct: 134 IIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEA 193

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           LK+Y++MR  +VG DGFTLV LLSSCAHVGAL+MG+ +HR A E   VE+++VGNAL+DM
Sbjct: 194 LKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDM 253

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAKCG+L SA  +F+ M KRDV +WNSMIVGYGVHGRGDEAI+FF  MLMAG  P+SITF
Sbjct: 254 YAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITF 313

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           LGLLCGCSHQGLV+EGV+YFHMM S +NLKPGIKHYGC+VDL+GRAGKL++ALEVI  SS
Sbjct: 314 LGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIR-SS 372

Query: 355 PS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           PS  DPVLWRTLLGSCKIHRNVEIGE+AM+NLVQL +  AGD VLL+ IYA  KD +GVA
Sbjct: 373 PSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVA 432

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           R RKLI+S GIKTTPGWSWIE+G+QVH+FVVDDKSHPD+  IYRKLEE++HRA  +GY  
Sbjct: 433 RMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAM 492

Query: 473 DE-SLVAVSGSSSEDFL-EKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
           +E SLVA   S+++++  E S++YHSEKLAIA+GLA TP+GTSL IVKNLR         
Sbjct: 493 EESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFT 552

Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              S+A+ R++IVRDRVR+HHF+ G CSC ++W
Sbjct: 553 KFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 128/281 (45%), Gaps = 9/281 (3%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR--GYAANGVIEAARSVFDNMPER 153
           L+ C  ++ L+K   +H  ++ +GY+    +S  L+     + +G +  A+ VF  +   
Sbjct: 12  LQGCNSMRKLHK---IHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNP 68

Query: 154 DLVSWNSIISCYTQ--ASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
              +WNS+I  ++Q  +   L+A+  Y  M        D +T   LL +C          
Sbjct: 69  QTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCR 128

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H      G+ + V +   L+  YA  G +++A  VF  M  RD++SWNSMI  Y   G
Sbjct: 129 EVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTG 188

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
             +EA+  + QM ++    D  T + LL  C+H G +  GV+  H       L   I   
Sbjct: 189 LHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQ-MHRFAGERRLVENIFVG 247

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
             L+D+Y + G L  AL + N+    D   W +++    +H
Sbjct: 248 NALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVH 288


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/546 (67%), Positives = 444/546 (81%), Gaps = 19/546 (3%)

Query: 24  EWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ--AIFYYNHMLM 81
           E LLN  A+SVS SL+YAQL+F++I NPQT AWNS+IR F+QS SPLQ  AI +YNHML 
Sbjct: 434 EKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLS 493

Query: 82  ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
           AS +RPDT+TF+F LKACE  K   KC+E+HGF+IR GY++ VV+ TNL+R YA NG+IE
Sbjct: 494 ASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIE 553

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            A  VF+ MP RDLVSWNS+ISCY Q   H EALK+Y++MR  +VG DGFTLV LLSSCA
Sbjct: 554 TAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCA 613

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
           HVGAL+MG+ +HR A E   VE+++VGNAL+DMYAKCG+L SA  +F+ M KRDV +WNS
Sbjct: 614 HVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNS 673

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MIVGYGVHGRGDEAI+FF  MLMAG  P+SITFLGLLCGCSHQGLV+EGV+YFHMM S +
Sbjct: 674 MIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEF 733

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEI 379
           NLKPGIKHYGC+VDL+GRAGKL++ALEVI  SSPS  DPVLWRTLLGSCKIHRNVEIGE+
Sbjct: 734 NLKPGIKHYGCMVDLFGRAGKLKEALEVIR-SSPSQHDPVLWRTLLGSCKIHRNVEIGEM 792

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
           AM+NLVQL +  AGD VLL+ IYA  KD +GVAR RKLI+S GIKTTPGWSWIE+G+QVH
Sbjct: 793 AMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVH 852

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE-SLVAVSGSSSEDFL-EKSSAYHSE 497
           +FVVDDKSHPD+  IYRKLEE++HRA  +GY  +E SLVA   S+++++  E S++YHSE
Sbjct: 853 RFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSE 912

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLAIA+GLA TP+GTSL IVKNLR            S A+ R++IVRDRVR+HHFR G C
Sbjct: 913 KLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVRFHHFRGGHC 972

Query: 546 SCGDYW 551
           SC ++W
Sbjct: 973 SCKEFW 978


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/538 (63%), Positives = 424/538 (78%), Gaps = 12/538 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LLN  AISVS SL+YAQLLF+Q++ PQT+AWNS+IR FAQS SP+ AI +YN M+  S S
Sbjct: 42  LLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFS 101

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PDTFTF+F LKACER+KA  KC+E+HG VIR GY+  V+V TNL++ Y+A G++  AR 
Sbjct: 102 IPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQ 161

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD MP RDLV+WN++ISC++Q   H EAL+ Y +MR E+V +DGFTLV L+SSCAH+GA
Sbjct: 162 VFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGA 221

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           LN+G+ +HR A E G  +S+YVGNAL+DMYAKCG+LD A  +F RM+++D+ +WNSMIVG
Sbjct: 222 LNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVG 281

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           YGVHGRG EAI  F+QML A   P+ +TFLGLLCGCSHQGLV+EGV+YF++M S++ LKP
Sbjct: 282 YGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKP 341

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
            +KHYGCLVDLYGRAGKL+KALE+++ SS +D VLWR LLGSCKIH+NV IGEIAM  L 
Sbjct: 342 EVKHYGCLVDLYGRAGKLDKALEIVSNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLS 401

Query: 386 QLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDD 445
           +L A SAGD +LLATIYA  KD+ GVAR RK+IKS G KTTPGWSWIEIG QVHKFVVDD
Sbjct: 402 ELGATSAGDCILLATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDD 461

Query: 446 KSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGL 505
           KSH  +  +Y KL E++H+A F GY  DES+ ++   S+ + L+ S  YHSEKLAIAFGL
Sbjct: 462 KSHRYSVEVYEKLREVIHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGL 521

Query: 506 ATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           A T DGT +RIVKNLR            S+A++R++IVRDRVR+HHF+ G CSC DYW
Sbjct: 522 ARTADGTQIRIVKNLRVCRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/538 (63%), Positives = 423/538 (78%), Gaps = 12/538 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LLN  AISVS SL+YAQLLF+Q++ PQT+AWNS+IR FAQS SP+ AI +YN M+  S S
Sbjct: 42  LLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFS 101

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PDTFTF+F LKACER+KA  KC+E+HG VIR GY+  V+V TNL++ Y+A G +  AR 
Sbjct: 102 IPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQ 161

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD MP RDLV+WN++ISC++Q   H EAL+ Y +MR E+V +DGFTLV L+SSCAH+GA
Sbjct: 162 VFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGA 221

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           LN+G+ +HR A E G  +S+YVGNAL+DMYAKCG+LD A  +F RM+++D+ +WNSMIVG
Sbjct: 222 LNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVG 281

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           YGVHGRG EAI  F+QML A   P+ +TFLGLLCGCSHQGLV+EGV+YF++M S++ LKP
Sbjct: 282 YGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKP 341

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
            +KHYGCLVDLYGRAGKL+KALE+++ SS +D VLWR LLGSCKIH+NV IGEIAM  L 
Sbjct: 342 EVKHYGCLVDLYGRAGKLDKALEIVSNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLS 401

Query: 386 QLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDD 445
           +L A SAGD +LLATIYA  KD+ GVAR RK+IKS G KTTPGWSWIEIG QVHKFVVDD
Sbjct: 402 ELGATSAGDCILLATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDD 461

Query: 446 KSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGL 505
           KSH  +  +Y KL E++H+A F GY  DES+ ++   S+ + L+ S  YHSEKLAIAFGL
Sbjct: 462 KSHRYSVEVYEKLREVIHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGL 521

Query: 506 ATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           A T DGT +RIVKNLR            S+A++R++IVRDRVR+HHF+ G CSC DYW
Sbjct: 522 ARTADGTQIRIVKNLRVCRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/569 (56%), Positives = 416/569 (73%), Gaps = 29/569 (5%)

Query: 11  GLNKARQAHEIHGEWLLNSY--------------AISVSSSLSYAQLLFNQIQ-NPQTQA 55
           G N  ++  +IH   ++N                A+SV+ SLS+AQLLF+    +P T  
Sbjct: 14  GCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSD 73

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WN LIR F+ S SPL +I +YN ML++S+SRPD FTF F LK+CER+K++ KC E+HG V
Sbjct: 74  WNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSV 133

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
           IRSG+    +V+T+L+R Y+ANG +E A  VFD MP RDLVSWN +I C++    H +AL
Sbjct: 134 IRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQAL 193

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
            +Y+RM  E V  D +TLV LLSSCAHV ALNMG+ LHRIAC++     V+V NAL+DMY
Sbjct: 194 SMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMY 253

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           AKCG+L++A  VF+ MRKRDVL+WNSMI+GYGVHG G EAISFF++M+ +G  P++ITFL
Sbjct: 254 AKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFL 313

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS- 354
           GLL GCSHQGLV+EGVE+F +M S+++L P +KHYGC+VDLYGRAG+LE +LE+I  SS 
Sbjct: 314 GLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSC 373

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
             DPVLWRTLLGSCKIHRN+E+GE+AMK LVQLEA +AGDYVL+ +IY+   D +  A  
Sbjct: 374 HEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASM 433

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
           RKLI+S+ ++T PGWSWIEIG+QVHKFVVDDK HP++ +IY +L E+++RA   GY  ++
Sbjct: 434 RKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPED 493

Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
           S    + + S+  L  +   HSEKLAIA+GL  T  GT+LRI KNLR            S
Sbjct: 494 S-NRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVS 552

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            A++R++IVRDRVR+HHF DG+CSC DYW
Sbjct: 553 KAFNREIIVRDRVRFHHFADGICSCNDYW 581


>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 651

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/554 (58%), Positives = 415/554 (74%), Gaps = 26/554 (4%)

Query: 12  LNKARQAHE---IHG--------EWLLNSYAISVSSSLSYAQLLFNQIQ-NPQTQAWNSL 59
           +NK R+ H    I+G          LL   A+SV+ SLSYAQLLF++   +P T AWN L
Sbjct: 18  MNKLRKIHSHVIINGLHHHPSIFNHLLRFCAVSVNGSLSYAQLLFDRFDSDPSTSAWNYL 77

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           IR F+ S SPL  I YYN ML++S+SRPD FTF+F LKACER++ + KC ELHG VIRSG
Sbjct: 78  IRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKCLELHGSVIRSG 137

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
           +    +VSTNL+R Y+ANG +E A  VFD MP RDLVSWN++ISC++ A  H +A  +Y 
Sbjct: 138 FLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAGLHHQAFSMYS 197

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           RM  E V +D +T+V LLSSCAHV ALNMG+ LHRIAC++    SV+V NAL+DMYAKCG
Sbjct: 198 RMANEGVCVDAYTIVALLSSCAHVSALNMGVMLHRIACDIRCESSVFVCNALIDMYAKCG 257

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
           +L++A  VF  MRKRDVL+WNSMI+GYGVHG G EAISFF++M+ +G  P+++TFLGLL 
Sbjct: 258 SLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAVTFLGLLL 317

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDP 358
           GCSHQGLV+EGVE+F +M S+++L P +KHYGC+VDL+GRAG+LEKALE+I+TSS   DP
Sbjct: 318 GCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLFGRAGQLEKALEMIHTSSCHEDP 377

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
           VLWRTLLGSCKIHRN+E+GE+AMK LVQLEA +AGDYVL+ +IY+   D +G A  RKLI
Sbjct: 378 VLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQGFASMRKLI 437

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
           +S+ ++T PGWSWIEIG+QVHKFV+DDK HP++ +IY +L E+++RA   GY  ++S   
Sbjct: 438 RSHDLRTIPGWSWIEIGDQVHKFVIDDKMHPESALIYSELGEVINRAILAGYKPEDS-NR 496

Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
            + + S+  LE +   HSEKLAIA+GL  T  GT+LRI KNLR            S A++
Sbjct: 497 TAHTLSDRCLESADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFN 556

Query: 527 RDLIVRDRVRYHHF 540
           R++IVRDRVR+H F
Sbjct: 557 REIIVRDRVRFHQF 570



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 126/280 (45%), Gaps = 8/280 (2%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR--GYAANGVIEAARSVFDNMPER 153
           L+ C    ++NK +++H  VI +G      +  +L+R    + NG +  A+ +FD     
Sbjct: 12  LQGC---NSMNKLRKIHSHVIINGLHHHPSIFNHLLRFCAVSVNGSLSYAQLLFDRFDSD 68

Query: 154 DLVS-WNSIISCYTQASFHLEALKLYERMRFEDVGL-DGFTLVCLLSSCAHVGALNMGIF 211
              S WN +I  ++ +S  L  +  Y RM    V   D FT    L +C  +  +   + 
Sbjct: 69  PSTSAWNYLIRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKCLE 128

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           LH      GF+    V   LV  Y+  G+++ A  VF  M  RD++SWN+MI  +   G 
Sbjct: 129 LHGSVIRSGFLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAGL 188

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
             +A S + +M   G   D+ T + LL  C+H   +  GV   H +      +  +    
Sbjct: 189 HHQAFSMYSRMANEGVCVDAYTIVALLSSCAHVSALNMGV-MLHRIACDIRCESSVFVCN 247

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            L+D+Y + G LE A+ V       D + W +++    +H
Sbjct: 248 ALIDMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVH 287


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/542 (42%), Positives = 336/542 (61%), Gaps = 17/542 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G++L+ +  +S  S +SYA  +F+QIQNP    WN++IR +A+S +P+ A+  Y  M ++
Sbjct: 76  GKYLIFTL-LSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVS 134

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +  PDT T+ F LKA  ++  + + +++H   IR+G+E  V V   L+  YAA G  E+
Sbjct: 135 CIE-PDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAES 193

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  +F+ M ER+LV+WNS+I+ Y       EAL L+  M    V  DGFT+V LLS+CA 
Sbjct: 194 AHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAE 253

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +GAL +G   H    ++G   +++ GNAL+D+YAKCG++  A  VF  M ++ V+SW S+
Sbjct: 254 LGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSL 313

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           IVG  V+G G EA+  FK++   G  P  ITF+G+L  CSH G+V+EG +YF  M   Y 
Sbjct: 314 IVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYG 373

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           + P I+HYGC+VDL GRAG +++A E I N     + V+WRTLLG+C IH ++ +GE+A 
Sbjct: 374 IVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVAR 433

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
             L+QLE   +GDYVLL+ +YA  +    V + R+ +   G+K TPG S +E+ N++H+F
Sbjct: 434 AQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEF 493

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
           V+ D+SHP  + IY KL EI    K  GY    S V       E   E + +YHSEK+AI
Sbjct: 494 VMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEK--ETALSYHSEKIAI 551

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           AF L  T  G  +R+VKNLR            S  + R+++VRDR R+HHF+DG CSC D
Sbjct: 552 AFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKD 611

Query: 550 YW 551
           YW
Sbjct: 612 YW 613


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/533 (42%), Positives = 331/533 (62%), Gaps = 16/533 (3%)

Query: 32  ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT 91
           +S+S+ +SYA  +F  I NP    WN++IR +A+S +P  A  +Y  M+++ +  PDT T
Sbjct: 62  VSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCV-EPDTHT 120

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           + F LKA  +   + + + +H   IR+G+E  V V  +L+  YAA G  E+A  VF+ M 
Sbjct: 121 YPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMK 180

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           ERDLV+WNS+I+ +       EAL L+  M  E V  DGFT+V LLS+ A +GAL +G  
Sbjct: 181 ERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRR 240

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H    ++G  ++ +V N+L+D+YAKCG +  A  VFS M +R+ +SW S+IVG  V+G 
Sbjct: 241 VHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGF 300

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           G+EA+  FK+M   G  P  ITF+G+L  CSH G+++EG EYF  M     + P I+HYG
Sbjct: 301 GEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYG 360

Query: 332 CLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           C+VDL  RAG +++A E I N     + V+WRTLLG+C IH ++ +GEIA  +L+ LE  
Sbjct: 361 CMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPK 420

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
            +GDYVLL+ +YA  +    V   R+ +  +G+K TPG+S +E+GN+V++F + D+SHP 
Sbjct: 421 HSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQ 480

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
           +  +Y  LE+I    K  GY    + V       E   E++ +YHSEK+AIAF L  TP 
Sbjct: 481 SQDVYALLEKITELLKLEGYVPHTANVLADIEEEEK--EQALSYHSEKVAIAFMLLNTPP 538

Query: 511 GTSLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           GT +R++KNLR  A            Y R++++RDR R+HHFR G CSC DYW
Sbjct: 539 GTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/540 (41%), Positives = 331/540 (61%), Gaps = 21/540 (3%)

Query: 30  YAISVSSS--LSYAQLLFNQIQNP-QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR 86
           Y +S+ S   +SYA  +F++I+ P     WN+LIR +A+  + + A+  Y  M  +    
Sbjct: 59  YLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVE 118

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           PDT T+ F LKA  ++  +   + +H  VIRSG+   + V  +L+  YA  G + +A  V
Sbjct: 119 PDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKV 178

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD MPE+DLV+WNS+I+ + +     EAL LY  M  + +  DGFT+V LLS+CA +GAL
Sbjct: 179 FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGAL 238

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            +G   H    ++G   +++  N L+D+YA+CG ++ A  +F  M  ++ +SW S+IVG 
Sbjct: 239 TLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298

Query: 267 GVHGRGDEAISFFKQM-LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
            V+G G EAI  FK M    G  P  ITF+G+L  CSH G+V+EG EYF  M   Y ++P
Sbjct: 299 AVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEP 358

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKN 383
            I+H+GC+VDL  RAG+++KA E I    P  P  V+WRTLLG+C +H + ++ E+A   
Sbjct: 359 RIEHFGCMVDLLARAGQVKKAYEYI-LKMPMQPNVVIWRTLLGACTVHGDSDLAELARMK 417

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           ++QLE   +GDYVLL+ +YA  +    V + RK +  +G++  PG S +E+GN+VH+F++
Sbjct: 418 ILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLM 477

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
            DKSHP  DMIY KL+E+  R +  GY    S V V     E   E +  YHSEK+AIAF
Sbjct: 478 GDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEK--ENALVYHSEKIAIAF 535

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            L +TP+   +R+VKNL+            S  Y+R+++VRDR R+HHF++G CSC DYW
Sbjct: 536 MLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 158/316 (50%), Gaps = 19/316 (6%)

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNL-------MRGYAANGVIEAARSVFDNMPER- 153
           V +L K +++H F IR+G     +    L       +    +   +  A  VF  + +  
Sbjct: 27  VSSLTKLRQIHAFSIRNGVS---ISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPI 83

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFL 212
           ++  WN++I  Y +    + A+ LY  MR    V  D  T   LL +   +  + +G  +
Sbjct: 84  NVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETI 143

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H +    GF   +YV N+L+ +YA CG++ SA+ VF +M ++D+++WNS+I G+  +G+ 
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           +EA++ + +M + G  PD  T + LL  C+  G +  G + FH+ + +  L   +     
Sbjct: 204 EEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLG-KRFHVYMIKVGLTRNLHSSNV 262

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM---KNLVQLEA 389
           L+DLY R G++E+A  + +     + V W +L+    ++    +G+ A+   KN+   E 
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN---GLGKEAIELFKNMESKEG 319

Query: 390 ASAGDYVLLATIYACT 405
               +   +  +YAC+
Sbjct: 320 LLPCEITFVGILYACS 335


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/533 (41%), Positives = 327/533 (61%), Gaps = 15/533 (2%)

Query: 32  ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT 91
           +S+S+ +S+A  +FNQIQ P    WN++IR FA+S +P  A+  ++ M  AS   PDT T
Sbjct: 79  VSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHT 138

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           F F  KA  ++  ++  + +H  V+R+G++    V  +L+  Y+  G  E+A  VF+ M 
Sbjct: 139 FPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMS 198

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
            RD V+WNS+I+ +       EAL LY  M  E V  DGFT+V LLS+C  +GAL +G  
Sbjct: 199 YRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGER 258

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H    ++G V++ +  NAL+D+Y+KCGN   A  VF  M +R V+SW S+IVG  V+G 
Sbjct: 259 VHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGL 318

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           G+EA+  F ++   G  P  ITF+G+L  CSH G+++EG  YF  M   Y + P I+H+G
Sbjct: 319 GNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHG 378

Query: 332 CLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           C+VDL  RAGK+  A + I N   P + V+WRTLLG+C IH ++E+GE+A   + +LE  
Sbjct: 379 CMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQR 438

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
            +GD+VLL+ +YA  +    V   RK++   G+K TPG+S +E+ N+V++F++ D+SHP 
Sbjct: 439 HSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQ 498

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
           ++  Y  L +I    K  GY      V V     E+  E + ++H+EK+AIAF L  TP 
Sbjct: 499 SEETYAMLAKITQLLKIEGYVP--RTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPP 556

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           GT +RI+KNLR            S  + R++IVRDR R+HHF+DG CSC DYW
Sbjct: 557 GTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/540 (41%), Positives = 332/540 (61%), Gaps = 21/540 (3%)

Query: 30  YAISVSSS--LSYAQLLFNQIQNP-QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR 86
           Y +S+ S   +SYA  +F++I+ P     WN+LIR +A+  + + A   Y  M ++ L  
Sbjct: 59  YLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVE 118

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           PDT T+ F +KA   +  +   + +H  VIRSG+   + V  +L+  YA  G + +A  V
Sbjct: 119 PDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKV 178

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD MPE+DLV+WNS+I+ + +     EAL LY  M  + +  DGFT+V LLS+CA +GAL
Sbjct: 179 FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGAL 238

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            +G  +H    ++G   +++  N L+D+YA+CG ++ A  +F  M  ++ +SW S+IVG 
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298

Query: 267 GVHGRGDEAISFFKQM-LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
            V+G G EAI  FK M    G  P  ITF+G+L  CSH G+V+EG EYF  M   Y ++P
Sbjct: 299 AVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEP 358

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKN 383
            I+H+GC+VDL  RAG+++KA E I  S P  P  V+WRTLLG+C +H + ++ E A   
Sbjct: 359 RIEHFGCMVDLLARAGQVKKAYEYIK-SMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQ 417

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           ++QLE   +GDYVLL+ +YA  +    V + RK +  +G+K  PG S +E+GN+VH+F++
Sbjct: 418 ILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLM 477

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
            DKSHP +D IY KL+E+  R +  GY    S V V     E   E +  YHSEK+AIAF
Sbjct: 478 GDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEK--ENAVVYHSEKIAIAF 535

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            L +TP+ + + +VKNLR            S  Y+R+++VRDR R+HHF++G CSC DYW
Sbjct: 536 MLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/533 (41%), Positives = 327/533 (61%), Gaps = 15/533 (2%)

Query: 32  ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT 91
           +S+S+ +S+A  +FNQIQ P    WN++IR FA+S +P  A+  ++ M  AS   PDT T
Sbjct: 79  VSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHT 138

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           F F  KA  ++  ++  + +H  V+R+G++    V  +L+  Y+  G + +A  VF+ M 
Sbjct: 139 FPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMS 198

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
            RD V+WNS+I+ +       EAL LY  M  E V  DGFT+V LLS+C  +GAL +G  
Sbjct: 199 YRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGER 258

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H    ++G V++ +  NAL+D+Y+KCGN   A  VF  M +R V+SW S+IVG  V+G 
Sbjct: 259 VHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGL 318

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           G+EA+  F ++   G  P  ITF+G+L  CSH G+++EG  YF  M   Y + P I+H+G
Sbjct: 319 GNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHG 378

Query: 332 CLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           C+VDL  RAGK+  A + I N   P + V+WRTLLG+C IH ++E+GE+A   + +LE  
Sbjct: 379 CMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQR 438

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
            +GD+VLL+ +YA  +    V   RK++   G+K TPG+S +E+ N+V++F++ D+SHP 
Sbjct: 439 HSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQ 498

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
           ++  Y  L +I    K  GY      V V     E+  E + ++H+EK+AIAF L  TP 
Sbjct: 499 SEETYAMLAKITQLLKIEGYVP--RTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPP 556

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           GT +RI+KNLR            S  + R++IVRDR R+HHF+DG CSC DYW
Sbjct: 557 GTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/532 (41%), Positives = 326/532 (61%), Gaps = 15/532 (2%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
             ++S+ +A  LF+QI  P    +N++ R +A++ +PL+A   +  +L + L  PD +TF
Sbjct: 66  PTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLF-PDDYTF 124

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              LKAC   KAL + ++LH   I+ G    V V   L+  Y A   ++ AR VFD + E
Sbjct: 125 PSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWE 184

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
             +V++N++I+ Y + S   EAL L+  ++  ++     T++ +LSSCA +GAL++G ++
Sbjct: 185 PCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWM 244

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H    + GF   V V  AL+DMYAKCG+LD A CVF  M  RD  +W++MI+ Y +HG G
Sbjct: 245 HEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHG 304

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            +A+S FK+M  AG  PD ITFLGLL  CSH GLVEEG EYF+ M  +Y + PGIKHYGC
Sbjct: 305 LKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGC 364

Query: 333 LVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           +VDL GRAG+LE+A E ++       P+LWRTLL +C  H NVE+G+  ++ + +L+ + 
Sbjct: 365 MVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSH 424

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
            GDY++L+ + A     E V   RKL+   G+   PG S +E+ N VH+F   D  H  +
Sbjct: 425 GGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVS 484

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
             +++ L+E++   K +GY  + SLV  +    E+  E +  YHSEKLAI FGL  TP G
Sbjct: 485 TKLHQALDELVKELKLVGYVPNTSLVFHADMEDEE-KEVTLRYHSEKLAITFGLLNTPPG 543

Query: 512 TSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           T++R+VKNLR            S+ + R +I+RD  R+HHF+DG CSC DYW
Sbjct: 544 TTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 334/571 (58%), Gaps = 48/571 (8%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           +L+  A+S   S+ YA+ LF +I+ P     N+LIRA+A S +P+ A+ +Y+ M  +S+ 
Sbjct: 73  ILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVV 132

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA-- 143
            PD  TF   LKAC  + +L   + +H  V + G+   V VS  L++ YA+ G+IE+A  
Sbjct: 133 FPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGL 192

Query: 144 -----------------------------RSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
                                        R +F+ MP+RD+VSW+ +I+ Y Q S   E 
Sbjct: 193 VFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEG 252

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L L++ M  E +  +   LV  LS+CAH+GA+  G ++ R         +V +G AL+DM
Sbjct: 253 LGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDM 312

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y+KCG+++ A  VF +M++++VL+W++MI G  ++G+G +A++ F QM M G  P+ +TF
Sbjct: 313 YSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTF 372

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           +G+L  CSH  LV+EG  +FH M S Y LKP   H+ C+VDLYGRAG L++A  VI  S 
Sbjct: 373 IGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIK-SM 431

Query: 355 PSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           P  P   +W  LL +C+IH + E+GE   K L++L+    G YVLL+ IYA     + VA
Sbjct: 432 PFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVA 491

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
             R++++   +  TPG S+I++G+ +H+FV  D SHP  +MIY KL E+    K  GY  
Sbjct: 492 ELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKP 551

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIA-------- 524
           D   V +     E   E +  +HSEKLAIAFGL  T  GT++RI KNLR  A        
Sbjct: 552 DTGQVLLDMDEEEK--ETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKL 609

Query: 525 ----YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               Y+R++IVRDR R+HHFRDG CSC D+W
Sbjct: 610 ISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 161/368 (43%), Gaps = 46/368 (12%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR--GYAANGVIEAARSVFDNMPER 153
           L +C+ +K L    ++H   I +G      V++ ++     + +G I  AR +F  + + 
Sbjct: 42  LSSCKTLKDLT---QIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKP 98

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL-DGFTLVCLLSSCAHVGALNMGIFL 212
           D+   N++I  Y  +   ++A+  Y  M    V   D  T   LL +C+ + +L +G  +
Sbjct: 99  DIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAI 158

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR---------------------- 250
           H    ++G+   V V N LV MYA CG ++SA  VF R                      
Sbjct: 159 HSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVF 218

Query: 251 ---------MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
                    M  RDV+SW+ MI GY    R  E +  F+ M+     P+    +  L  C
Sbjct: 219 KSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSAC 278

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
           +H G +E+G ++    + R N++  ++    L+D+Y + G +E+ALEV +     + + W
Sbjct: 279 AHLGAMEQG-QWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAW 337

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYACTKD---EEGVARTRK 416
             ++    I+     G+ A+    Q+E       +   +  + AC+     +EG +    
Sbjct: 338 SAMINGLAINGQ---GKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHS 394

Query: 417 LIKSNGIK 424
           +    G+K
Sbjct: 395 MTSIYGLK 402


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/570 (40%), Positives = 340/570 (59%), Gaps = 27/570 (4%)

Query: 5   KHARYVGLNKARQAHEIHGEW---------LLNSYAISVSSSLSYAQLLFNQIQNPQTQA 55
           K    VG  KA QAH +             L+ S A+++S  ++YA  +F+   +P    
Sbjct: 15  KRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFM 74

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WN++IR ++ S SP+ AI  Y  M +  +S P+++TF F LKAC ++  L + QELH  +
Sbjct: 75  WNTIIRGYSISDSPITAIALYRDMFLCGIS-PNSYTFGFVLKACCKLLRLCEGQELHSQI 133

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
           ++ G +    +   L++ YAA G ++ A  +FD MPE D  SW++++S Y Q    +EAL
Sbjct: 134 VKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEAL 193

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           KL+  M+ E+V  D FTL  ++  C  +GAL++G ++H    + G    V +G ALV MY
Sbjct: 194 KLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMY 253

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           +KCG+LD+A  VF  M +RDV +W++MI GY +HG G++A+  F  M  +   P+ +TF 
Sbjct: 254 SKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFT 313

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
            +L  CSH GLVE+G + F  M + Y + P IKHYGC+VDL+ RAG +  A + I T  P
Sbjct: 314 SVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQT-MP 372

Query: 356 SDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
            +P  VLWRTLLG+CK H   ++GE   + +++L+ +S  +YVL++ +YA       V +
Sbjct: 373 IEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQ 432

Query: 414 TRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD 473
            R L+K    K   GWS IEI   VHKF++ D+SHP+ + IY  L ++  + K +G+   
Sbjct: 433 VRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVN- 491

Query: 474 ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------ 521
            S V V     E+  E +   HSE+LAIA+GL  TP+G+ +RIVKNLR            
Sbjct: 492 -STVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLI 550

Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           S  Y+R++IVRDRVR+HHFR+  CSC DYW
Sbjct: 551 SEVYNREIIVRDRVRFHHFRERGCSCNDYW 580


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/541 (40%), Positives = 340/541 (62%), Gaps = 18/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS-L 84
           LL   AIS    LSYA  +F  I  P T  WN++IR  A S  P  A+F+Y  M  ++ L
Sbjct: 39  LLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGL 98

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
            R D  T +F LKAC R  A ++  +LH  ++R G+   V++ T L+  YA  G ++ A+
Sbjct: 99  HRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQ 158

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHV 203
            +FD MP+ D+ SWN++I+ + Q S   +A+  ++RM+ + ++  +  T+   L +C+ +
Sbjct: 159 KLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQL 218

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSM 262
           GAL  G  +H+   E     +V V N ++DMYAKCG++D A+ VF  MR  + +++WN+M
Sbjct: 219 GALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTM 278

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I+ + +HG G +A+  F+++  +G  PD++++L +LC C+H GLVE+G++ F+ M  R  
Sbjct: 279 IMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-G 337

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           L+P IKHYG +VDL GRAG+L++A +++++    + VLW+TLLG+C+ + +VE+ E+A +
Sbjct: 338 LEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLLGACRTYGDVEMAELASR 397

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            LV++   S GD+VLL+ +YA  +  + V R R  ++   +K TPG+S+IEI  +++KFV
Sbjct: 398 KLVEMGFISCGDFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFV 457

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             D+SH     IY KL+EI  R K  GY+ D S V +     ED  E +  YHSEKLA+A
Sbjct: 458 NGDQSHSSCREIYAKLDEINLRIKAYGYSADTSNV-LHDIGDED-KENALCYHSEKLAVA 515

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FGL  T +GT ++++KNLR            S  Y R++IVRDR R+H F++GLCSC DY
Sbjct: 516 FGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDY 575

Query: 551 W 551
           W
Sbjct: 576 W 576


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/529 (41%), Positives = 319/529 (60%), Gaps = 15/529 (2%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           +S+ +A  +F++I  P    +N++ R +A+   PL+AI   + +L + L  PD +TF+  
Sbjct: 83  ASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGL-LPDDYTFSSL 141

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LKAC R+KAL + ++LH   ++ G    + V   L+  Y A   ++AAR VFD + E  +
Sbjct: 142 LKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCV 201

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           V++N+II+   + S   EAL L+  ++   +     T++  LSSCA +GAL++G ++H  
Sbjct: 202 VAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEY 261

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             + GF + V V  AL+DMYAKCG+LD A  VF  M +RD  +W++MIV Y  HG G +A
Sbjct: 262 VKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQA 321

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           IS  ++M  A   PD ITFLG+L  CSH GLVEEG EYFH M   Y + P IKHYGC++D
Sbjct: 322 ISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMID 381

Query: 336 LYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           L GRAG+LE+A + I+       P+LWRTLL SC  H NVE+ ++ ++ + +L+ +  GD
Sbjct: 382 LLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGD 441

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YV+L+ + A     + V   RK++   G    PG S IE+ N VH+F   D  H  + ++
Sbjct: 442 YVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTIL 501

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           +  L+E++   K  GY  D SLV  +    E+  E    YHSEKLAI +GL  TP GT++
Sbjct: 502 HHALDELVKELKLAGYVPDTSLVFYADIEDEE-KEIVLRYHSEKLAITYGLLNTPPGTTI 560

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+VKNLR            S+ + R +I+RD  R+HHF+DG CSCGDYW
Sbjct: 561 RVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/541 (41%), Positives = 329/541 (60%), Gaps = 21/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL  YA+S+ + LS+A L F+QI+ P T  WN++IR F QS +P  A  +Y  M+  S  
Sbjct: 44  LLELYALSLGN-LSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKS-R 101

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           + D  T +F LKAC RV A  +  ++H  ++R G+    ++ T L+  YA  G I++A  
Sbjct: 102 KVDALTCSFVLKACARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEK 161

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD M +RD+ SWN++IS + Q S   EAL L++RM  +    +  +++  LS+CA +G 
Sbjct: 162 VFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGD 221

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIV 264
              G  +H       F  +  V N ++DMYAKCG +D A+ VF  M  ++D+++WN+MI+
Sbjct: 222 FKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIM 281

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
            + +HG G +A+  F++M  +G  PD +++L +LC C+H GLVEEG   F+ M     +K
Sbjct: 282 AFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSM-ENCGVK 340

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMK 382
           P +KHYG +VDL GRAG+L +A +++N S P+ P  VLW+TLLG+ + HRNVEI E   +
Sbjct: 341 PNVKHYGSVVDLLGRAGRLHEAYDIVN-SMPTVPDIVLWQTLLGASRTHRNVEIAETVSR 399

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            LV++ +   GD+VLL+ +YA  +    V R R+ +K+  +K  PG S+IE    +HKF 
Sbjct: 400 KLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFY 459

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             DKSH     IY KL+EI  R K  GY  + S V       E+  E    +HSEKLA+A
Sbjct: 460 NADKSHESWREIYAKLDEIRFRVKEYGYVAETSFVL--HDIGEEDKENVLGHHSEKLAVA 517

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FGL +T +GT ++++KNLR            S  Y R++IVRDRVR+H F++G CSC DY
Sbjct: 518 FGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDY 577

Query: 551 W 551
           W
Sbjct: 578 W 578


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/541 (40%), Positives = 339/541 (62%), Gaps = 18/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS-L 84
           LL   AIS    LSYA  +F  I  P T  WN++IR  A S  P  A+F+Y  M  ++ L
Sbjct: 39  LLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGL 98

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
            R D  T +F LKAC R  A ++  +LH  ++R G+   V++ T L+  YA  G ++ A+
Sbjct: 99  HRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQ 158

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHV 203
            +FD MP+ D+ SWN++I+ + Q S   +A+  ++RM+ + ++  +  T+   L +C+ +
Sbjct: 159 KLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQL 218

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSM 262
           GAL  G  +H+   E     +V V N ++DMYAKCG++D A+ VF  MR  + +++WN+M
Sbjct: 219 GALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTM 278

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I+ + +HG G +A+  F+++  +G  PD++++L +LC C+H GLVE+G++ F+ M  R  
Sbjct: 279 IMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-G 337

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           L+P IKHYG +VDL GRAG+L++A +++++    + VLW+TLLG+C+ + +VE+ E+A +
Sbjct: 338 LEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLLGACRTYGDVEMAELASR 397

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            LV++   S G +VLL+ +YA  +  + V R R  ++   +K TPG+S+IEI  +++KFV
Sbjct: 398 KLVEMGFISCGXFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFV 457

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             D+SH     IY KL+EI  R K  GY+ D S V +     ED  E +  YHSEKLA+A
Sbjct: 458 NGDQSHSSCREIYAKLDEINLRIKAYGYSADTSNV-LHDIGDED-KENALCYHSEKLAVA 515

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FGL  T +GT ++++KNLR            S  Y R++IVRDR R+H F++GLCSC DY
Sbjct: 516 FGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDY 575

Query: 551 W 551
           W
Sbjct: 576 W 576


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/541 (40%), Positives = 329/541 (60%), Gaps = 18/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
            L+  A+S S  + Y+  +F+QI  P    +N +IRA++ S SP Q  + Y  M    + 
Sbjct: 106 FLSRAALSPSRDMGYSSQVFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVP 165

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+  + +F +K+C R+ +L    ++H  ++R G++   ++ T LM  Y+     E A  
Sbjct: 166 -PNPLSSSFVMKSCIRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACK 224

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHV 203
           VFD +P+ D VSWN +ISC        +AL++++ M+    G   D  T + LL +CA++
Sbjct: 225 VFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANL 284

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           GAL  G  +H    E G+  ++ + N+L+ MY++CG L+ A+ +F RM +R+V+SW++MI
Sbjct: 285 GALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMI 344

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            G+ +HG G EAI  F+QM   G  PD  T  G+L  CSH GLV++G+ +F  M   + +
Sbjct: 345 SGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGI 404

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           +P I HYGC+VDL GRAG L++A ++I +     D  LWRTLLG+C+IHR+  +GE  + 
Sbjct: 405 EPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIG 464

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
           +L++L+A  AGDYVLL  IY+   + + V   RK +K  GI+T+PG S IE+  +VH+FV
Sbjct: 465 HLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFV 524

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
           VDD  HP  D IY  L+EI  + K  GY  + S   +    +E+   + S YHSEKLAIA
Sbjct: 525 VDDILHPRTDEIYEMLDEIGKQLKIAGYVAELS-SELHNLGAEEKGNRLS-YHSEKLAIA 582

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FG+  TP GT++R+ KNLR            S AY+R++++RDR R+HHFR+G CSC  Y
Sbjct: 583 FGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGY 642

Query: 551 W 551
           W
Sbjct: 643 W 643


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/566 (39%), Positives = 330/566 (58%), Gaps = 53/566 (9%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S +S + YA  +F+QIQNP    +N++IR  + S +P QA  +Y       L  PD  TF
Sbjct: 64  SGTSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGL-LPDNLTF 122

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVS------------------------- 127
            F +K+C ++  ++   + HG +I+ G+E+ V V                          
Sbjct: 123 PFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYY 182

Query: 128 ------TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
                 T+++RG+   G +E+AR +FD MPE++LV+W+++IS Y Q +   +A++L++ +
Sbjct: 183 VDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVL 242

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           + + V  +   +V ++SSCAH+GAL +G   H    + G   ++ +G ALVDMYA+CG++
Sbjct: 243 QSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSI 302

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           D A  VF  + +RD LSW ++I G  +HG  + ++ +F  M+ AG  P  ITF  +L  C
Sbjct: 303 DKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSAC 362

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI--NTSSPSDPV 359
           SH GLVE G + F  M   + ++P ++HYGC+VDL GRAGKLE+A   +      P+ PV
Sbjct: 363 SHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPV 422

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
            W  LLG+C+IH+N EIGE   K L+QL    +G YVLL+ IYA  K+ E V   R+++K
Sbjct: 423 -WGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMK 481

Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD--ESLV 477
           + G+K  PG S IE+  +VHKF + D SHP+ D I R  EEI+ R +  GY  +  ++L 
Sbjct: 482 AKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALF 541

Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
            +     E  L +    HSEKLAIAFG+  +  GT +RIVKNLR            S  +
Sbjct: 542 DIDEEEKESALHR----HSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVF 597

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R+LIVRDR R+HHFR GLCSC DYW
Sbjct: 598 GRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 25/230 (10%)

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           VD  +    +D A  +FS+++  ++  +N+MI G+      D+A  F+ Q    G  PD+
Sbjct: 60  VDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDN 119

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
           +TF  L+  C+    +  G +  H  + ++  +  +     LV +Y   G  E A  +  
Sbjct: 120 LTFPFLVKSCTKLHCISMGSQA-HGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQ 178

Query: 352 TSSPSDPVLWRTLLGSCKIHRNVE-----IGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
                D V W +++       +VE       ++  KNLV      +G        YA   
Sbjct: 179 RMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISG--------YAQNN 230

Query: 407 DEEGVARTRKLIKSNGIKTTPG-----------WSWIEIGNQVHKFVVDD 445
             +      K+++S G++                  +E+G + H +VV +
Sbjct: 231 HFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKN 280


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/602 (38%), Positives = 340/602 (56%), Gaps = 87/602 (14%)

Query: 30  YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
           +A S ++ L YA+ +F++I +P T  WN++IRA+  S +P +++  +  M        D+
Sbjct: 46  FACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDS 105

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV--- 146
           ++ +  ++AC R+K     Q+LH  V++ G    + V T L+  YA  G IE AR++   
Sbjct: 106 YSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDE 165

Query: 147 ----------------------------FDNMPERDLVSWN------------------- 159
                                       FD MPERDLVSWN                   
Sbjct: 166 MAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLF 225

Query: 160 ------------SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
                       S+I+ Y +A    EAL+L+  M+  +V  D  T+V +LS+C  VGAL 
Sbjct: 226 DRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALG 285

Query: 208 MGIFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
           MG  +H    E   +E  + +G +LVDMYAKCG++D++  VF+ M  RDV +W++MI+G 
Sbjct: 286 MGKMIHE-CIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGL 344

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
             HG G+ A+  F +M+     P+ +TF+G+L  CSH GLV+EG  YF  M   Y++ P 
Sbjct: 345 ANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPK 404

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
           I+HYGC+VD+ GRAG+L++A+E+I +     D ++WR LLG+C+I++NVEI E A  NL+
Sbjct: 405 IEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLL 464

Query: 386 QLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDD 445
           +LE    G+YVLL+ IY+  K+ + V   R+++K+  I+  PG S IE+ N VH+FV  D
Sbjct: 465 ELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGD 524

Query: 446 KSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSS----AYHSEKLAI 501
           +SHP++  I R L EI  R K  GY        ++ S  +DF EK      A+HSEKLAI
Sbjct: 525 QSHPESKKILRMLSEITARLKANGYA------PLTASVLQDFDEKEKENALAHHSEKLAI 578

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           AFGL +T  G+++RIVKNLR            S  Y R +IVRDR R+HHF +G CSC D
Sbjct: 579 AFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKD 638

Query: 550 YW 551
           YW
Sbjct: 639 YW 640



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 161/375 (42%), Gaps = 74/375 (19%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGY----AANGVIEAARSVFDNMPERDL 155
           +    LN+  ++H  +I++  +    V   L+R      +AN ++  ARSVFD +P  D 
Sbjct: 11  QNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLL-YARSVFDEIPSPDT 69

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
             WN++I  Y  +    E++ L+ +MR ++ + +D ++L  ++ +C  +     G  LH 
Sbjct: 70  FIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHT 129

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCV--------------------------- 247
              ++G    ++V  AL++MYAK G+++ A  +                           
Sbjct: 130 QVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINL 189

Query: 248 ----FSRMRKRDVLSWNSMIVGYGVHG-------------------------------RG 272
               F RM +RD++SWN+MI G+   G                               + 
Sbjct: 190 AHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQS 249

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           +EA+  F +M +A   PD +T + +L  C   G +  G +  H  + R  ++  +K    
Sbjct: 250 NEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMG-KMIHECIERNRIEIDLKLGTS 308

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAA 390
           LVD+Y + G ++ +L V N  +  D   W  ++     H     GE+A+ +  ++  E  
Sbjct: 309 LVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANH---GFGELALDHFSKMISEDI 365

Query: 391 SAGDYVLLATIYACT 405
              D   +  + AC+
Sbjct: 366 KPNDVTFIGVLSACS 380


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/541 (39%), Positives = 327/541 (60%), Gaps = 22/541 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA     +++ A  LF ++      +WN++I  ++ +    +A+ ++N M +  + 
Sbjct: 262 LVNMYA--KCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGI- 318

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +P++ T    L AC  + AL + Q++HG+ IRSG+E   VV   L+  YA  G + +A  
Sbjct: 319 KPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYK 378

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F+ MP++++V+WN+IIS Y+Q     EAL L+  M+ + +  D F +V +L +CAH  A
Sbjct: 379 LFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLA 438

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H      GF  +V VG  LVD+YAKCGN+++A  +F RM ++DV+SW +MI+ 
Sbjct: 439 LEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILA 498

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           YG+HG G++A++ F +M   G   D I F  +L  CSH GLV++G++YF  M S Y L P
Sbjct: 499 YGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAP 558

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            ++HY CLVDL GRAG L++A  +I N S   D  +W  LLG+C+IH N+E+GE A K+L
Sbjct: 559 KLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHL 618

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
            +L+  +AG YVLL+ IYA  +  E VA+ RK++K  G+K  PG S + +   V  F+V 
Sbjct: 619 FELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVG 678

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIA 502
           D++HP ++ IY  LE +  + +  GY  + +L    V   + E+ L      HSEKLAI+
Sbjct: 679 DRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSS----HSEKLAIS 734

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FG+  T  G  +RI+KNLR            S    R++IVRD  R+HH ++G CSCGDY
Sbjct: 735 FGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDY 794

Query: 551 W 551
           W
Sbjct: 795 W 795



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 202/369 (54%), Gaps = 3/369 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A+ +F+++      +WN++I  ++Q+  P +A+  ++ M +  + +P++ T    +
Sbjct: 170 SLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGI-KPNSSTLVSVM 228

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
             C  + AL + +++H + IRSG E  V+V   L+  YA  G +  A  +F+ MP RD+ 
Sbjct: 229 PVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVA 288

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN+II  Y+  S H EAL  + RM+   +  +  T+V +L +CAH+ AL  G  +H  A
Sbjct: 289 SWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYA 348

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              GF  +  VGNALV+MYAKCGN++SA+ +F RM K++V++WN++I GY  HG   EA+
Sbjct: 349 IRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEAL 408

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           + F +M   G  PDS   + +L  C+H   +E+G +  H    R   +  +     LVD+
Sbjct: 409 ALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQ-IHGYTIRSGFESNVVVGTGLVDI 467

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           Y + G +  A ++       D V W T++ +  IH + E   +A+ + +Q          
Sbjct: 468 YAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGE-DALALFSKMQETGTKLDHIA 526

Query: 397 LLATIYACT 405
             A + AC+
Sbjct: 527 FTAILTACS 535



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 185/366 (50%), Gaps = 9/366 (2%)

Query: 46  NQIQNPQTQ------AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           NQ Q  QT        W   I  + ++    +A+  Y  M    ++ PD   F   +KAC
Sbjct: 72  NQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGIN-PDKLVFLSVIKAC 130

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
                L   +++H  +I  G+E  V+V T L   Y   G +E AR VFD MP+RD+VSWN
Sbjct: 131 GSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWN 190

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           +II+ Y+Q     EAL L+  M+   +  +  TLV ++  CAH+ AL  G  +H  A   
Sbjct: 191 AIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS 250

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G    V V N LV+MYAKCGN+++A  +F RM  RDV SWN++I GY ++ +  EA++FF
Sbjct: 251 GIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFF 310

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
            +M + G  P+SIT + +L  C+H   +E+G +  H    R   +        LV++Y +
Sbjct: 311 NRMQVRGIKPNSITMVSVLPACAHLFALEQG-QQIHGYAIRSGFESNDVVGNALVNMYAK 369

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            G +  A ++       + V W  ++     H +     +A+   +Q +      + +++
Sbjct: 370 CGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEA-LALFIEMQAQGIKPDSFAIVS 428

Query: 400 TIYACT 405
            + AC 
Sbjct: 429 VLPACA 434


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/531 (41%), Positives = 316/531 (59%), Gaps = 15/531 (2%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93
            ++S+ YA  LF  I  P    +NS+ R +++S +PL+AI  +   L  +L  PD +TF 
Sbjct: 73  TTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNL-LPDDYTFP 131

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
             LKAC   KA  + ++LH   I+ G      V   L+  YA    ++ A+ VFD + E 
Sbjct: 132 SLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEP 191

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
            +VS+N+II+ Y ++S   EAL L+ +++   +  +  T++ +LSSCA +GAL++G ++H
Sbjct: 192 CVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIH 251

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
               + G  + V V  AL+DMYAKCG+LD A  VF  M  RD  +W++MIV Y +HG+G 
Sbjct: 252 EYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQ 311

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           + +S F++M  A   PD ITFLGLL  CSH GLV+EG  YF+ M   Y + PGIKHYGC+
Sbjct: 312 DVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCM 371

Query: 334 VDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           VDL GRAG L +A + I+       P+LWRTLL SC  H N+E+ +  M  +++L+ +  
Sbjct: 372 VDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHG 431

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
           GDYV+L+ + A     E V   RKL+   G    PG S IE+ N VH+F   D  H  + 
Sbjct: 432 GDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVST 491

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            ++R L+E++   K +GY  D SLV       E+  E +  YHSEKLAI+FGL  TP GT
Sbjct: 492 ALHRALDELVKELKSVGYVPDTSLVVHPDMEDEE-KEITLRYHSEKLAISFGLLNTPPGT 550

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++R+VKNLR            S    R++I+RD  R+HHF+DG CSCGDYW
Sbjct: 551 TIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/542 (40%), Positives = 331/542 (61%), Gaps = 25/542 (4%)

Query: 26  LLNSYAISVSSS-LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           LL   A+S S + L YA  +   I +P T  +N+L+R  A+   P  A+ +     ++++
Sbjct: 41  LLEHCALSPSPAYLPYAAHIHRHIPHPSTNDFNALLRGLARGPHPTHALTF-----LSTI 95

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
             PD  TF+F+L A  R  AL++  ++H  ++R G    +++ T L+  YA  G +++A+
Sbjct: 96  LHPDALTFSFSLIASARALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQ 155

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VFD +P RD+ +WN++I+   Q S   EAL L+ RMR E   ++  +++  L++C+ +G
Sbjct: 156 RVFDEIPLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLG 215

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
           AL  G  +H    +M    +V V NA++DMYAKCG  D  F VFS M   + V++WN+MI
Sbjct: 216 ALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMI 275

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
           + + +HG G  A+  F++M       DS+T+L +LC C+H GLVEEGV  F  MV R  +
Sbjct: 276 MAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGR-GV 334

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAM 381
              +KHYG +VDL GRAG+L +A  +IN S P   D VLW++LLG+CK + NVE+ E+A 
Sbjct: 335 NRNVKHYGSVVDLLGRAGRLGEAYRIIN-SMPIVPDVVLWQSLLGACKTYGNVEMAEMAS 393

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           + LV++ + S GD+VLL+ +YA  +  E V R R+ +KS  ++  PG+S+IE+   +HKF
Sbjct: 394 RKLVEMGSNSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKF 453

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
           V  D+SHPD   IY KL+EI  R K  GY  + SLV       E+  E +  +HSEKLA+
Sbjct: 454 VNGDQSHPDWREIYAKLDEIRFRIKAFGYVAETSLVL--HDIGEEDKENALCHHSEKLAV 511

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           AFGL +T +GT +R+ KNLR            S  Y +++IVRDR R+H F+DG CSC D
Sbjct: 512 AFGLISTSEGTPIRVNKNLRICGDCHVVIKLISKIYDQEIIVRDRARFHRFKDGSCSCRD 571

Query: 550 YW 551
           YW
Sbjct: 572 YW 573


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/580 (37%), Positives = 337/580 (58%), Gaps = 32/580 (5%)

Query: 2   GLKKHARYVGLNKARQAHE------IHGEWLLNSYAISVSS---SLSYAQLLFNQIQNPQ 52
            +K  +  + L+  RQAH+         +  ++S  + + S    L  A+ LF++I +  
Sbjct: 158 AIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRN 217

Query: 53  TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP-------DTFTFTFTLKACERVKAL 105
             +W S+I  + Q+    +A+  +   L+             D       L AC RV   
Sbjct: 218 IVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEK 277

Query: 106 NKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCY 165
           +  + +HGF+I+ G+E  + V   LM  YA  G +  +R VFD M ERD++SWNSII+ Y
Sbjct: 278 SITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVY 337

Query: 166 TQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
            Q     E+++++ RM +  ++  +  TL  +L +CAH G+  +G  +H    +MG   +
Sbjct: 338 AQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESN 397

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           V+VG +++DMY KCG ++ A   F RMR+++V SW++M+ GYG+HG   EA+  F +M M
Sbjct: 398 VFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNM 457

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
           AG  P+ ITF+ +L  CSH GL+EEG  +F  M   ++++PG++HYGC+VDL GRAG L+
Sbjct: 458 AGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLK 517

Query: 345 KALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403
           +A ++I       D V+W  LLG+C++H+NV++GEI+ + L +L+  + G YVLL+ IYA
Sbjct: 518 EAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYA 577

Query: 404 CTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMH 463
                E V R R L+K++G+   PG+S ++I  +VH F+V D+ HP  + IY  LE++  
Sbjct: 578 DAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSM 637

Query: 464 RAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-- 521
           + + +GY  D  + +V      +  E     HSEKLA+AFG+  T  GT++ I+KNLR  
Sbjct: 638 KLQEVGYVPD--MTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVC 695

Query: 522 ----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                     S    R+++VRD  R+HHFRDGLCSCGDYW
Sbjct: 696 GDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 173/338 (51%), Gaps = 12/338 (3%)

Query: 44  LFNQ-IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
           LFN+ +      +WNS+I   A+S   ++A+  ++ M   SL +P+  TF   +K+C  +
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSL-KPNRSTFPCAIKSCSAL 165

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
             L+  ++ H   +  G+E  + VS+ L+  Y+  G +  AR++FD +  R++VSW S+I
Sbjct: 166 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 225

Query: 163 SCYTQASFHLEALKLYERMRFEDVG--------LDGFTLVCLLSSCAHVGALNMGIFLHR 214
           + Y Q      AL L++    E+ G        +D   +V +LS+C+ V   ++   +H 
Sbjct: 226 TGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHG 285

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              + GF   + V N L+D YAKCG L  +  VF  M +RDV+SWNS+I  Y  +G   E
Sbjct: 286 FLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTE 345

Query: 275 AISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           ++  F +M+  G  + +++T   +L  C+H G    G +  H  V +  L+  +     +
Sbjct: 346 SMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLG-KCIHDQVIKMGLESNVFVGTSI 404

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +D+Y + GK+E A +  +     +   W  ++    +H
Sbjct: 405 IDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMH 442



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 149/325 (45%), Gaps = 41/325 (12%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPER-DLVSWNSIISCYTQASFHLEALKLYER 180
           R +     L R Y+ N  +    ++F+   ++ ++ SWNS+I+   ++   +EAL+ +  
Sbjct: 86  RSICAGAVLRRRYSNNPNLT---TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSS 142

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           MR   +  +  T  C + SC+ +  L+ G   H+ A   GF   ++V +ALVDMY+KCG 
Sbjct: 143 MRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGE 202

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM--------AGFHPDSI 292
           L  A  +F  +  R+++SW SMI GY  +     A+  FK+ L+             D I
Sbjct: 203 LRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPI 262

Query: 293 TFLGLLCGCSH--QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
             + +L  CS   +  + EGV   H  + +   +  +     L+D Y + G+L  +  V 
Sbjct: 263 AMVSVLSACSRVSEKSITEGV---HGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVF 319

Query: 351 NTSSPSDPVLWRTLLG----------SCKI-HRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           +  +  D + W +++           S +I HR V+ GEI   N V L A      VLLA
Sbjct: 320 DGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINY-NAVTLSA------VLLA 372

Query: 400 TIYACTKDEEGVARTRKLIKSNGIK 424
             ++      G  R  K I    IK
Sbjct: 373 CAHS------GSQRLGKCIHDQVIK 391


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/531 (40%), Positives = 313/531 (58%), Gaps = 15/531 (2%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93
            +S + +A  LF+QI +     +N + R +A+S SP  A   +  +L + L  PD +TF+
Sbjct: 76  TTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGL-LPDDYTFS 134

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
             LKAC   KAL +   LH F ++ G    + +   L+  YA    + AAR VFD M + 
Sbjct: 135 SLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQP 194

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
            +VS+N+II+ Y ++S   EAL L+  ++  ++     T++ ++ SCA +GAL++G ++H
Sbjct: 195 CIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIH 254

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
               + GF + V V  AL+DM+AKCG+L  A  +F  MR RD  +W++MIV +  HG G 
Sbjct: 255 EYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGL 314

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           +AIS F++M   G  PD ITFLGLL  CSH GLVE+G  YF+ M   Y + PGIKHYGC+
Sbjct: 315 KAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCM 374

Query: 334 VDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           VDL GRAG L++A   ++     + P+LWRTLL +C  H NVE+ +  ++ + +L+ A  
Sbjct: 375 VDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHG 434

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
           GDYV+L+ +YA     E V   RKL+K  G+   PG S +E+ N VH+F   D  H  + 
Sbjct: 435 GDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSV 494

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            + R L+E+M   K +GY  D SLV       E+  E    YHSEKLA+AFGL  TP GT
Sbjct: 495 ELRRALDELMKEIKLVGYVPDTSLV-YHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGT 553

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++R+ KNLR            S  + R +++RD  R+H F DG CSCGD+W
Sbjct: 554 TIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/566 (39%), Positives = 321/566 (56%), Gaps = 51/566 (9%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A+  S SL YA+L+FNQI NP T   NS+IR +     P QAI +Y  M++  L  PD F
Sbjct: 21  ALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLD-PDRF 79

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           TF    K+C     L + ++LH    + G+     +   LM  Y+  G + +AR VFD M
Sbjct: 80  TFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM 136

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMR---------------------------F 183
             + +VSW ++I  Y Q     EA+KL+ RM                            F
Sbjct: 137 VNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLF 196

Query: 184 EDVGLDG-----FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
            ++ L G      T+  LL +C H+GAL +G +LH    +      V +G ALVDMYAKC
Sbjct: 197 NEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKC 256

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G+++SA  VF  M ++DV++W ++IVG  + G+G +A+  F +M M+   PD+ITF+G+L
Sbjct: 257 GSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVL 316

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSD 357
             CSH GLV EG+ YF+ M ++Y ++P I+HYGC+VD+ GRAG++ +A ++I N     D
Sbjct: 317 AACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPD 376

Query: 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
             +   LL +C+IH N+ + E A + L++L+  + G YVLL+ IY+  K+ E   + R+L
Sbjct: 377 YFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMREL 436

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV 477
           +    IK  PG S IE+G  VH+FV  D SHP +  IY  L+++M R K  GY  D+S V
Sbjct: 437 MVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEV 496

Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
                  E   E   + HSEKLAIAFGL +T  GT +R+VKNLR            S  Y
Sbjct: 497 LFDMDEKEK--ENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVY 554

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R++IVRDR R+HHF  G CSC D+W
Sbjct: 555 NREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 121/285 (42%), Gaps = 45/285 (15%)

Query: 22  HGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81
           + +W L   AI +   +  A  LF          WN +I    +     +A+  +N M +
Sbjct: 151 YAQWDLPHEAIKLFRRMEIASNLF---------CWNIMINGHVEDSDYEEALSLFNEMQL 201

Query: 82  ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
           + + + D  T    L AC  + AL   + LH ++ +   E  V + T L+  YA  G IE
Sbjct: 202 SGV-KGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIE 260

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
           +A  VF  MPE+D+++W ++I         L+AL+L+  M+  +V  D  T V +L++C+
Sbjct: 261 SAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACS 320

Query: 202 HVGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
           H G +N GI + + +  + G   S+     +VDM                          
Sbjct: 321 HAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDM-------------------------- 354

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
                 G  GR  EA    + M MA   PD    +GLL  C   G
Sbjct: 355 -----LGRAGRIAEAEDLIQNMPMA---PDYFVLVGLLSACRIHG 391


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/555 (40%), Positives = 326/555 (58%), Gaps = 45/555 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  +  +FN    P   +++++I +  QS    +A  YY+ ML   +  P+ FTF+  LK
Sbjct: 95  LDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGV-EPNAFTFSSVLK 153

Query: 98  AC--ERVKALNKCQELH-----GFVIRSGY---------------------ERCVVVSTN 129
           +C  E  K L+ CQ +         +R+G                      ER +V  T 
Sbjct: 154 SCSLESGKVLH-CQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTT 212

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           ++  Y+  G ++ ARS+F+ M ERD+V WN +I  Y Q+    E+LKL+ RM       +
Sbjct: 213 MLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPN 272

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
             T++ +LS+C  +GAL  G ++H      G   +V+VG AL+DMY+KCG+L+ A  VF 
Sbjct: 273 EVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFD 332

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
           R+R +DV++WNSMIVGY +HG    A+  F++M   G  P  ITF+G+L  C H GLVEE
Sbjct: 333 RIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEE 392

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSC 368
           G  +F +M  +Y ++P I+HYGC+V+L GRAG LE+A  ++ N +  +DPVLW TLLG C
Sbjct: 393 GRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCC 452

Query: 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPG 428
           ++H N+++GE   K LV  + A++G YVLL+ +YA T + EGVA+ R L+K +GI+   G
Sbjct: 453 RLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHG 512

Query: 429 WSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFL 488
            S IE+ N+VH+FV  ++ HP +  IY  L EI    K  GYT    +V       E+  
Sbjct: 513 CSSIEVDNKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVL--HDLREEQK 570

Query: 489 EKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVR 536
           E+S   HSEKLAIAFGL +T  GT+++IVKNLR            S    R +++RDR R
Sbjct: 571 EQSLEVHSEKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNR 630

Query: 537 YHHFRDGLCSCGDYW 551
           +HHF DGLCSCGDYW
Sbjct: 631 FHHFEDGLCSCGDYW 645



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 36/303 (11%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
           ++ K++    ++H  ++R G     +++  L R YAA G ++ +  VF+   E ++ S++
Sbjct: 55  DKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFS 114

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           +II  + Q+     A   Y +M    V  + FT   +L SC    +L  G  LH  A ++
Sbjct: 115 AIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSC----SLESGKVLHCQAIKL 170

Query: 220 GFVESVYVGNALVDMYA-------------------------------KCGNLDSAFCVF 248
           G    +YV   LVD+YA                               K G LD A  +F
Sbjct: 171 GLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLF 230

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
             M++RDV+ WN MI GY   G  +E++  F++ML+A   P+ +T L +L  C   G +E
Sbjct: 231 EGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALE 290

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            G  + H  +    ++  +     L+D+Y + G LE A  V +     D V W +++   
Sbjct: 291 SG-RWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGY 349

Query: 369 KIH 371
            +H
Sbjct: 350 AMH 352


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/592 (38%), Positives = 332/592 (56%), Gaps = 60/592 (10%)

Query: 14  KARQAHEIHGEWLLNSYA----ISVSSS---LSYAQLLFNQIQNPQTQAWNSLIRAFAQS 66
           K   AH I    + + +A    IS+S +   L YA  +F QIQNP    +NS IR F+ S
Sbjct: 32  KIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGS 91

Query: 67  LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV 126
             P ++  +Y       L  PD  T+ F +KAC +  +L+   + HG +IR G++  V V
Sbjct: 92  KDPDKSFHFYVQSKRNGLV-PDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYV 150

Query: 127 S-------------------------------TNLMRGYAANGVIEAARSVFDNMPERDL 155
                                           T+++ GY  +G + +AR +FD MPE++L
Sbjct: 151 QNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNL 210

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           V+W+ +IS Y + SF  +A++LY  ++ E V  +   +V +++SCAH+GAL +G   H  
Sbjct: 211 VTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDY 270

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
                   ++ +G ALVDMYA+CG++D A  VF ++  RD LSW ++I G+ +HG  ++A
Sbjct: 271 ILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKA 330

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           + +F +M  AG  P  ITF  +L  CSH GLVE G+E F  M   Y ++P ++HYGC+VD
Sbjct: 331 LEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVD 390

Query: 336 LYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L GRAGKL +A + +N     P+ P+ W  LLG+C+IH+N EI E A K L++L+   +G
Sbjct: 391 LLGRAGKLAEAEKFVNEMPMKPNAPI-WGALLGACRIHKNSEIAERAGKTLIELKPEHSG 449

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            YVLL+ IYA T   E V   R+++K  G+   PG++  E+  +VHKF + DK+HP+   
Sbjct: 450 YYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQ 509

Query: 454 IYRKLEEIMHRAKFIGYT--KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
           I R  EEI+ + +  GYT   D++L  +     E  + +    HSEKLAIA+ +  T   
Sbjct: 510 IERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHR----HSEKLAIAYAIMRTKGH 565

Query: 512 TSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             +RIVKNLR            S  Y R+LIVRDR R+HHF+ G CSC DYW
Sbjct: 566 DPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 146/343 (42%), Gaps = 37/343 (10%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L   E    L+  + +H  +IR+     V  ++ L+       +++ A  VF  +   +L
Sbjct: 19  LSFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNL 78

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
             +NS I  ++ +    ++   Y + +   +  D  T   L+ +C   G+L+MGI  H  
Sbjct: 79  FIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQ 138

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG--- 272
               GF   VYV N+LV MY+  G++ SA  VF R+   DV+SW SM+ GY   G     
Sbjct: 139 IIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSA 198

Query: 273 ----------------------------DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
                                       D+AI  +  +   G H +    + ++  C+H 
Sbjct: 199 RKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHL 258

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364
           G +E G E  H  + R  +   +     LVD+Y R G ++KA+ V +     D + W TL
Sbjct: 259 GALELG-ERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTL 317

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAA--SAGDYVLLATIYACT 405
           +    +H      E A++   ++E A  +  +    A + AC+
Sbjct: 318 IAGFAMH---GYAEKALEYFSRMEKAGLTPREITFTAVLSACS 357


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/530 (40%), Positives = 317/530 (59%), Gaps = 17/530 (3%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           SS+SYA+ LF+ +  P    +NS+ R +++S +PL+    +  +L   L  PD +TF   
Sbjct: 79  SSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDL-LPDNYTFPSL 137

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LKAC   KAL + ++LH   ++ G +  V V   L+  Y     ++AAR VFD + E  +
Sbjct: 138 LKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCV 197

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           V +N++I+ Y + +   EAL L+  M+ +++  +  TL+ +LSSCA +G+L++G ++H  
Sbjct: 198 VCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEY 257

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A + GF + V V  AL+DM+AKCG+LD A  +F  MR +D  +W++MIV Y  HG+ + +
Sbjct: 258 AKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENS 317

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F++M      PD ITFLGLL  CSH GLVEEG EYF  MV  + + P IKHYG +VD
Sbjct: 318 MLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVD 377

Query: 336 LYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L GRAG LE A E I+    SP+ P+LWR LL +C  H N+E+ E   + +++L+ +  G
Sbjct: 378 LLGRAGHLEDAYEFIDKLPISPT-PMLWRILLAACSSHNNLELAEKVSERILELDDSHGG 436

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
           DYV+L+ +YA  K  E V   RK++K       PG S IE+ N VH+F   D        
Sbjct: 437 DYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTK 496

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           ++R L+E++   K  GY  D S+V V     +   E +  YHSEKLAIAFGL  TP GT+
Sbjct: 497 LHRALDEMVKELKLAGYVPDTSMV-VHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTT 555

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R+VKNLR            S+ + R +++RD  R+HHF DG CSC D+W
Sbjct: 556 IRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/525 (40%), Positives = 319/525 (60%), Gaps = 21/525 (4%)

Query: 30  YAISVSSS--LSYAQLLFNQIQNP-QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR 86
           Y +S+ S   +SYA  +F++I+ P     WN+LIR +A+  + + A   Y  M ++ L  
Sbjct: 59  YLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVE 118

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           PDT T+ F +KA   +  +   + +H  VIRSG+   + V  +L+  YA  G + +A  V
Sbjct: 119 PDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKV 178

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD MPE+DLV+WNS+I+ + +     EAL LY  M  + +  DGFT+V LLS+CA +GAL
Sbjct: 179 FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGAL 238

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            +G  +H    ++G   +++  N L+D+YA+CG ++ A  +F  M  ++ +SW S+IVG 
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298

Query: 267 GVHGRGDEAISFFKQM-LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
            V+G G EAI  FK M    G  P  ITF+G+L  CSH G+V+EG EYF  M   Y ++P
Sbjct: 299 AVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEP 358

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKN 383
            I+H+GC+VDL  RAG+++KA E I  S P  P  V+WRTLLG+C +H + ++ E A   
Sbjct: 359 RIEHFGCMVDLLARAGQVKKAYEYIK-SMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQ 417

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           ++QLE   +GDYVLL+ +YA  +    V + RK +  +G+K  PG S +E+GN+VH+F++
Sbjct: 418 ILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLM 477

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
            DKSHP +D IY KL+E+  R +  GY    S V V     E   E +  YHSEK+AIAF
Sbjct: 478 GDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEK--ENAVVYHSEKIAIAF 535

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVR 536
            L +TP+ + + +VKNLR            S  Y+R+++VRDR R
Sbjct: 536 MLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/554 (41%), Positives = 317/554 (57%), Gaps = 43/554 (7%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L Y+  LF + QNP    W ++I   A      QA+ +Y  ML   +  P+ FTF+  LK
Sbjct: 78  LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGV-EPNAFTFSSILK 136

Query: 98  AC--ERVKALNKCQELHGF----VIRSGY---------------------ERCVVVSTNL 130
            C  E  KAL+      GF     +R+G                      E+ +V  T +
Sbjct: 137 LCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAM 196

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190
           +  YA +G ++AAR +FD M ERD V WN +I  YTQ     EAL L+ RM       + 
Sbjct: 197 LTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNE 256

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
            T++ +LS+C  +GAL  G ++H      G   +V+VG ALVDMY+KCG+L+ A  VF +
Sbjct: 257 VTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDK 316

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           +  +DV++WNSMIVGY +HG   EA+  FK M   G HP +ITF+G+L  C H G V EG
Sbjct: 317 IDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEG 376

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCK 369
            + F+ M   Y ++P I+HYGC+V+L GRAG +E+A E++ N +   DPVLW TLLG+C+
Sbjct: 377 WDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACR 436

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           +H  + +GE  ++ LV    A++G Y+LL+ IYA   + +GVAR R ++K +G+K  PG 
Sbjct: 437 LHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGC 496

Query: 430 SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
           S IE+ N+VH+F+    +HP    IY  LEEI    K  GYT    +V      +E   E
Sbjct: 497 SSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEK--E 554

Query: 490 KSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIA------------YSRDLIVRDRVRY 537
           +S   HSEKLAIAFGL  T  GT+++IVKNLR  A              R ++VRDR R+
Sbjct: 555 RSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRF 614

Query: 538 HHFRDGLCSCGDYW 551
           HHF +G CSCGDYW
Sbjct: 615 HHFVNGSCSCGDYW 628



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 135/303 (44%), Gaps = 36/303 (11%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
           ++ K ++   ++H  + R G +   +++  L R YA+ G ++ + ++F       +  W 
Sbjct: 38  DKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWT 97

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           +II  +     H +AL  Y +M  + V  + FT   +L  C     +  G  LH  A ++
Sbjct: 98  AIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKL 153

Query: 220 GFVESVYVGNALVDM-------------------------------YAKCGNLDSAFCVF 248
           GF   +YV   L+D+                               YAK G LD+A  +F
Sbjct: 154 GFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLF 213

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
             M +RD + WN MI GY  +G  +EA+  F++ML A   P+ +T L +L  C   G +E
Sbjct: 214 DGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALE 273

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            G  + H  +    ++  +     LVD+Y + G LE A  V +     D V W +++   
Sbjct: 274 SG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGY 332

Query: 369 KIH 371
            +H
Sbjct: 333 AMH 335


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/559 (40%), Positives = 317/559 (56%), Gaps = 48/559 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+YA+ +F+ +QNP    +NSLIRA + S +PL+A+  Y+ ML + L +PD  T+ F +K
Sbjct: 116 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGL-KPDHMTYPFVIK 174

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           AC           +H  V++SG+E                               R VV 
Sbjct: 175 ACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVS 234

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
              ++ GY  +  +  AR VFD M  RD++SWN++I+ Y       EAL L+++MR   V
Sbjct: 235 WNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGV 294

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
                T+V LLS+CAH+GAL+ G+ LH    +     +  VG ALVDMYAKCG +  A  
Sbjct: 295 KPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQ 354

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF+ M  +DVL+WN++I G  +HG   EA   FK+M  AG  P+ ITF+ +L  CSH G+
Sbjct: 355 VFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGM 414

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLL 365
           V+EG +    M S Y ++P ++HYGC++DL  RAG LE+A+E+I T     +P     LL
Sbjct: 415 VDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALL 474

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
           G C+IH N E+GE+  K L+ L+   +G Y+LL+ IYA  K  +   + R L+K NGI  
Sbjct: 475 GGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISK 534

Query: 426 TPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAK-FIGYTKDESLVAVSGSSS 484
            PG S IE+   VH+FV  D SHP+++ IY KL EI  R K  IGY+ D   V +     
Sbjct: 535 VPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLL--DME 592

Query: 485 EDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVR 532
           E+  E + A HSEKLAIA+GL       ++RIVKNLR            S  Y R++IVR
Sbjct: 593 EEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVR 652

Query: 533 DRVRYHHFRDGLCSCGDYW 551
           DR R+HHF DG CSC D+W
Sbjct: 653 DRNRFHHFEDGECSCLDFW 671


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/539 (39%), Positives = 322/539 (59%), Gaps = 18/539 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S    L  A+ +F+++ N    +W ++I A+AQ   P +AI  +  M +AS+ 
Sbjct: 178 LMNMY--SNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASV- 234

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +P+  T    L AC R + L   +++H ++  +G     V+++ LM  Y   G    AR 
Sbjct: 235 KPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARD 294

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F+ MPE++L  WN +I+ + + S + EAL L+  M+   V  D  T+  LL +C H+GA
Sbjct: 295 LFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGA 354

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L +G +LH    +      V +G ALVDMYAKCG+++SA  VF  M ++DV++W ++IVG
Sbjct: 355 LELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVG 414

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
             + G+G +A+  F +M M+   PD+ITF+G+L  CSH GLV EG+ YF+ M ++Y ++P
Sbjct: 415 LAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQP 474

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            I+HYGC+VD+ GRAG++ +A ++I N     D  +   LL +C+IH N+ + E A + L
Sbjct: 475 SIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQL 534

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           ++L+  + G YVLL+ IY+  K+ E   + R+L+    IK  PG S IE+G  VH+FV  
Sbjct: 535 IELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKG 594

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D SHP +  IY  L+++M R K  GY  D+S V       E   E   + HSEKLAIAFG
Sbjct: 595 DVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEK--ENELSLHSEKLAIAFG 652

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L +T  GT +R+VKNLR            S  Y+R++IVRDR R+HHF  G CSC D+W
Sbjct: 653 LLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 175/335 (52%), Gaps = 5/335 (1%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A+  S SL YA+L+FNQI NP T   NS+IR +     P QAI +Y  M++  L  PD F
Sbjct: 83  ALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLD-PDRF 141

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           TF    K+C     L + ++LH    + G+     +   LM  Y+  G + +AR VFD M
Sbjct: 142 TFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM 198

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
             + +VSW ++I  Y Q     EA+KL+ RM    V  +  TLV +L++CA    L    
Sbjct: 199 VNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAK 258

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H+   E G      + +AL+D+Y KCG    A  +F++M ++++  WN MI G+    
Sbjct: 259 QVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDS 318

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
             +EA+S F +M ++G   D +T   LL  C+H G +E G ++ H+ + +  ++  +   
Sbjct: 319 DYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALG 377

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             LVD+Y + G +E A+ V       D + W  L+
Sbjct: 378 TALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALI 412


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/566 (39%), Positives = 323/566 (57%), Gaps = 49/566 (8%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           AIS S  L+YA  +F++I +P    +N++ R + +       IF Y+ ML  S+S P+ F
Sbjct: 63  AISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVS-PNKF 121

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGY------------------------------ 120
           T+   ++AC    A+ + +++H  V++ G+                              
Sbjct: 122 TYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNM 181

Query: 121 -ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
            +R VV  T+L+ GY+  G ++ AR VF+ MPER+ VSWN++I+ Y Q++   EA  L++
Sbjct: 182 PQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFD 241

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           RMR E+V LD F    +LS+C  +GAL  G ++H    + G      +   ++DMY KCG
Sbjct: 242 RMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCG 301

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            L+ A  VF+ + ++ + SWN MI G  +HG+G+ AI  FK+M      PD ITF+ +L 
Sbjct: 302 CLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLS 361

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN--TSSPSD 357
            C+H GLVEEG  YF  M     LKPG++H+GC+VDL GRAG LE+A ++IN    +P  
Sbjct: 362 ACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDA 421

Query: 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
            VL   L+G+C+IH N E+GE   K +++LE  ++G YVLLA +YA     E VA+ RKL
Sbjct: 422 GVLG-ALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKL 480

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV 477
           +   G+K  PG+S IE  + V +F+   ++HP A  IY KL+EI+   + IGY  D    
Sbjct: 481 MNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTD-- 538

Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
            V     E+  E    YHSEKLAIAFGL  T  G +LRI KNLR            S  Y
Sbjct: 539 GVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVY 598

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R++I+RDR R+HHFR G CSC DYW
Sbjct: 599 DREIIIRDRNRFHHFRMGGCSCKDYW 624


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/554 (40%), Positives = 316/554 (57%), Gaps = 43/554 (7%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L Y+  LF + QNP    W ++I   A      QA+ +Y  ML   +  P+ FTF+  LK
Sbjct: 25  LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGV-EPNAFTFSSILK 83

Query: 98  AC--ERVKALNKCQELHGF----VIRSGY---------------------ERCVVVSTNL 130
            C  E  KAL+      GF     +R+G                      E+ +V  T +
Sbjct: 84  LCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAM 143

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190
           +  YA +G ++AAR +FD M ERD V WN +I  YTQ     EAL L+ RM       + 
Sbjct: 144 LTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNE 203

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
            T++ +LS+C  +GAL  G ++H      G   +V+VG ALVDMY+KCG+L+ A  VF +
Sbjct: 204 VTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDK 263

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           +  +DV++WNSMIVGY + G   EA+  FK M   G HP +ITF+G+L  C H G V EG
Sbjct: 264 IDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEG 323

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCK 369
            + F+ M   Y ++P I+HYGC+V+L GRAG +E+A E++ N +   DPVLW TLLG+C+
Sbjct: 324 WDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACR 383

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           +H  + +GE  ++ LV    A++G Y+LL+ IYA   + +GVAR R ++K +G+K  PG 
Sbjct: 384 LHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGC 443

Query: 430 SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
           S IE+ N+VH+F+    +HP    IY  LEEI    K  GYT    +V      +E   E
Sbjct: 444 SSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEK--E 501

Query: 490 KSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIA------------YSRDLIVRDRVRY 537
           +S   HSEKLAIAFGL  T  GT+++IVKNLR  A              R ++VRDR R+
Sbjct: 502 RSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRF 561

Query: 538 HHFRDGLCSCGDYW 551
           HHF +G CSCGDYW
Sbjct: 562 HHFVNGSCSCGDYW 575



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 119/267 (44%), Gaps = 36/267 (13%)

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           L R YA+ G ++ + ++F       +  W +II  +     H +AL  Y +M  + V  +
Sbjct: 15  LQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPN 74

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN--------- 240
            FT   +L  C     +  G  LH  A ++GF   +YV   L+D+YA+ G+         
Sbjct: 75  AFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD 130

Query: 241 ----------------------LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
                                 LD+A  +F  M +RD + WN MI GY  +G  +EA+  
Sbjct: 131 TMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVL 190

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F++ML A   P+ +T L +L  C   G +E G  + H  +    ++  +     LVD+Y 
Sbjct: 191 FRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYS 249

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL 365
           + G LE A  V +     D V W +++
Sbjct: 250 KCGSLEDARLVFDKIDDKDVVAWNSMI 276



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YA  G LD +  +F R +   V  W ++I G+ + G  ++A++F+ QML  G  P++ TF
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
             +L  C     +E G +  H    +      +     L+D+Y R G +  A ++ +T  
Sbjct: 79  SSILKLCP----IEPG-KALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDT-M 132

Query: 355 PSDPVLWRTLLGSC 368
           P   ++  T + +C
Sbjct: 133 PEKSLVSLTAMLTC 146



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 17/148 (11%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ Y  S   SL  A+L+F++I +    AWNS+I  +A      +A+  +  M   
Sbjct: 241 GTALVDMY--SKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRM 298

Query: 83  SLSRPDTFTFTFTLKAC-------ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
            L  P   TF   L AC       E     NK ++ +G   +  +  C+V   NL+ G A
Sbjct: 299 GL-HPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMV---NLL-GRA 353

Query: 136 ANGVIEAARSVFDNMP-ERDLVSWNSII 162
             G +E A  +  NM  E D V W +++
Sbjct: 354 --GHVEQAYELVKNMNIEPDPVLWGTLL 379


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/565 (37%), Positives = 328/565 (58%), Gaps = 51/565 (9%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           + +SS SYA+L+F  +   +   WN+ +R+FA+  SP  AI  +  +    +S PD +T 
Sbjct: 58  AFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDIS-PDHYTC 116

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
           +F LKAC R+  +   + +HG+V + G +  + +   ++  YA  G I  AR VFD MP+
Sbjct: 117 SFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQ 176

Query: 153 RDLVSWN-------------------------------SIISCYTQASFHLEALKLYERM 181
           RD+++WN                               S+I  Y Q     EA+ L+  M
Sbjct: 177 RDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEM 236

Query: 182 RFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
             ED GL  +  T+V +L +CA +G L +G  +H  +   G+ +++ V N L+DMY KCG
Sbjct: 237 --EDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCG 294

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            L+ A  +F  M +R V+SW++MI G   HGR ++A++ F +M+  G  P+++TF+G+L 
Sbjct: 295 CLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILH 354

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE-VINTSSPSDP 358
            CSH G+VE+G +YF  M   Y + P I+HYGC+VDL+ RAG L++A E ++N     + 
Sbjct: 355 ACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNG 414

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
           V+W  LLG CK+H+N+++ E A ++L +L+  + G YV+L+ IYA     E VAR RKL+
Sbjct: 415 VVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLM 474

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
           +  G+K TPGWS I +   V+ FV  D +HP  + I++  E+++ R K  GY  + S+V 
Sbjct: 475 RDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVL 534

Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
           +     ED  EK    HSEKLA+ FGL  T  GT +RI+KNLR            S+  +
Sbjct: 535 L--DMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVST 592

Query: 527 RDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+++VRDR R+H F++G CSCGDYW
Sbjct: 593 REIVVRDRNRFHCFKNGSCSCGDYW 617



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 147/356 (41%), Gaps = 50/356 (14%)

Query: 86  RPDT-----FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
           RP T     FT  F LK            +LH  ++++      +  + +    A N   
Sbjct: 16  RPSTHLLHNFTSPFELK------------QLHAHLLKTNSPLSSLPLSRVASVCAFNSSF 63

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
             A+ +F  +   ++  WN+ +  + +     +A+ L+ R+R  D+  D +T   +L +C
Sbjct: 64  SYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKAC 123

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
           + +  +  G  +H    ++G   ++++ N +V +YA CG +  A  VF +M +RDV++WN
Sbjct: 124 SRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWN 183

Query: 261 -------------------------------SMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
                                          SMI GY   G+  EAI  F +M  AG  P
Sbjct: 184 IMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLP 243

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           + +T + +L  C+  G +  G    H   +R   +  I+    L+D+Y + G LE A  +
Sbjct: 244 NEVTVVAVLVACADMGNLVLG-RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRI 302

Query: 350 INTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
            +       V W  ++     H   E   +A+ N +            +  ++AC+
Sbjct: 303 FDNMEERTVVSWSAMIAGLAAHGRAE-DALALFNKMINTGVKPNAVTFIGILHACS 357


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/541 (39%), Positives = 314/541 (58%), Gaps = 18/541 (3%)

Query: 26  LLNSYAISVSS-SLSYAQLLFNQIQN-PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS 83
           L+     SVSS   + + LLF Q      +   NS+IR +  S   L ++F Y  M    
Sbjct: 78  LMKLIDFSVSSHGFAASALLFTQFYGFIDSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNG 137

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
           +  PD+ TF   LK+  ++      + +H  +I+ G+E  V VST L+  Y     +  A
Sbjct: 138 IF-PDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDA 196

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           R VFD +P+R++VSWN++I+ Y       + + ++  M+         T+V +L +CAH+
Sbjct: 197 RQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHL 256

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           GALN G ++           +V+VG AL+DMYAKCG +D A  +F  MR ++V +WN +I
Sbjct: 257 GALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLI 316

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            GY ++GRG+ A+  F +M+M  F PD +TFLG+LC C HQGLV EG  YF  M   + L
Sbjct: 317 SGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGL 376

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           +P I+HYGC+VDL GRAG L++A ++I   S   DP++WR LLG+C+IH N+++GE A+K
Sbjct: 377 RPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIK 436

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            L++LE  +  +YVLLA +YA  +  + V   R+++    ++  PG S IEI N V++FV
Sbjct: 437 KLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFV 496

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
           V +   P  + +Y+ L ++  + K  GY  D  + +      E   E S  YHSEKLA+A
Sbjct: 497 VSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEK--EHSLMYHSEKLALA 554

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FGL  +P G +LRIVKNLR            S  Y RD+ VRDR R+HHF  G CSC DY
Sbjct: 555 FGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDY 614

Query: 551 W 551
           W
Sbjct: 615 W 615


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/570 (39%), Positives = 328/570 (57%), Gaps = 37/570 (6%)

Query: 14  KARQAHEIHGEWLLNSYAIS----VSSSLSYAQLL--FNQIQNPQTQAWNSLIRAFAQSL 67
           K   AH I    + ++Y +S    +SS++ +   L  FN I NP    +N+LI + A ++
Sbjct: 26  KQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIFNHIPNPTIFLYNTLISSLA-NI 84

Query: 68  SPLQAIFY--YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC-V 124
            P   I +  Y+ +L  +  +P+ FTF    KAC     L   + LH  V++     C  
Sbjct: 85  KPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKFLEPTCDP 144

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ--------ASFHLEALK 176
            V   L+  YA  G + A R +F+ + + DL SWNSI+S Y           S  LE L 
Sbjct: 145 FVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLT 204

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           L+  M+   +  +  TLV L+S+CA +GAL+ G + H    +     + +VG AL+DMY+
Sbjct: 205 LFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYS 264

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           KCG LD A  +F ++  RD L +N+MI G+ +HG G +A+  FK+M + G  PD +T + 
Sbjct: 265 KCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVV 324

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE-VINTSSP 355
            +C CSH GLVEEG + F  M   Y ++P ++HYGCLVDL GRAG+L +A E V+N    
Sbjct: 325 TMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMK 384

Query: 356 SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415
            + V+WR+LLG+ ++H N+EIGE+ +K+L+QLE  ++G+YVLL+ +YA     + V R R
Sbjct: 385 PNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVR 444

Query: 416 KLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD-- 473
           KL+K +GI   PG S +E+G  +H+F++ DK+HP +  IY KLEE+  R    G+     
Sbjct: 445 KLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHKPRTL 504

Query: 474 ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------ 521
           E L  +     ED L    +YHSE+LAIAF L  +     +RI+KNLR            
Sbjct: 505 EVLFDIEEEEKEDAL----SYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLI 560

Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           S  Y R++IVRDR R+HHF++G CSC DYW
Sbjct: 561 SKIYEREIIVRDRNRFHHFKEGACSCSDYW 590


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/595 (38%), Positives = 344/595 (57%), Gaps = 56/595 (9%)

Query: 6   HARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
           HA+ V        H  HG+++  + A+  +++L YA  L N   NP     NS+IRA+++
Sbjct: 29  HAQLVVKGILNNPH-FHGQFVA-TIALHNTTNLDYANKLLNHNNNPTLFTLNSMIRAYSK 86

Query: 66  SLSPLQAIFYYNHMLMASLSR--PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE-- 121
           S +P ++  +Y ++L ++ +   PD +TFTF ++ C +++A      +HG VI+ G+E  
Sbjct: 87  SSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVIKHGFELD 146

Query: 122 ------------------RC-----------VVVSTNLMRGYAANGVIEAARSVFDNMPE 152
                              C           +V  T ++   A  G I+ AR +FD MPE
Sbjct: 147 PHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPE 206

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           RD V+WN++I+ Y Q     EAL ++  M+ E V L+  ++V +LS+C H+  L+ G ++
Sbjct: 207 RDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWV 266

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H          +V +G ALVDMYAKCGN+D A  VF  M++R+V +W+S I G  ++G G
Sbjct: 267 HAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFG 326

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           +E++  F  M   G  P+ ITF+ +L GCS  GLVEEG ++F  M + Y + P ++HYG 
Sbjct: 327 EESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGL 386

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVL--WRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           +VD+YGRAG+L++AL  IN S P  P +  W  LL +C++++N E+GEIA + +V+LE  
Sbjct: 387 MVDMYGRAGRLKEALNFIN-SMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDK 445

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           + G YVLL+ IYA  K+ E V+  R+ +K+ G+K  PG S IE+  +VH+F+V DKSHP 
Sbjct: 446 NDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPR 505

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDES--LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
            D I  KLEEI    +  GY  + +  L  +     ED L K    HSEK+AIAFGL + 
Sbjct: 506 YDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSK----HSEKVAIAFGLISL 561

Query: 509 PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                +R+V NLR            S  ++R++IVRDR R+HHF+DG CSC DYW
Sbjct: 562 KGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/571 (37%), Positives = 327/571 (57%), Gaps = 33/571 (5%)

Query: 12  LNKARQAHE------IHGEWLLNSYAISVSSS---LSYAQLLFNQIQNPQTQAWNSLIRA 62
           LN  +QAH+         +  ++S  I + S    LS A++LF++I       W SLI  
Sbjct: 98  LNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITG 157

Query: 63  FAQSLSPLQAIFYYNHMLMASL--------SRPDTFTFTFTLKACERVKALNKCQELHGF 114
           + Q+    +A+  +   L            +  D+      L AC RV      + +HG 
Sbjct: 158 YVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGV 217

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
            I+ G ++ + V   L+  YA  G +  +R VFD+M E+D+VSWNS+I+ Y Q     +A
Sbjct: 218 AIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDA 277

Query: 175 LKLYERMRFEDVG-LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
            +++  M     G  +  TL  LL +CAH GAL +G+ LH    +MG+V +V +  +++D
Sbjct: 278 FEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIID 337

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY KCG  + A   F  M++++V SW +MI GYG+HG   EA+  F QM+ AG  P+ IT
Sbjct: 338 MYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYIT 397

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT- 352
           F+ +L  CSH G +EEG  +F+ M   YN++PG++HYGC+VDL GRAG +++A  +I + 
Sbjct: 398 FISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSM 457

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
               D VLW +LL +C+IH++VE+ EI+ + L +L+ ++ G YVLLA IYA     + V 
Sbjct: 458 KVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVE 517

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           R R L+K  G+   PG+S +E+  +VH F+V DK HP  + IY+ LEE+  + +  GY  
Sbjct: 518 RMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVP 577

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           +  + +V     E+  E     HSEKLA+AFG+  +  G+++ ++KNLR           
Sbjct: 578 N--MASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKL 635

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S   SR++IVRD  R+HHF+DGLCSCGDYW
Sbjct: 636 ISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 177/355 (49%), Gaps = 13/355 (3%)

Query: 28  NSYAISVSSSLSYAQLLFNQ-IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR 86
           N ++ + +++ +    LFN+        +WNSLI   A+     +++  ++ M    + +
Sbjct: 21  NHFSTTAAATNTNLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDI-K 79

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P+  TF   +K+C  +  LN  ++ H   +  G+E  + VS+ L+  Y+  G +  AR +
Sbjct: 80  PNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVL 139

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF-------EDVG--LDGFTLVCLL 197
           FD +P R++V+W S+I+ Y Q     EAL +++   F       E+VG  +D   ++ +L
Sbjct: 140 FDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVL 199

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           S+C+ V    +   +H +A ++G  + + V N L+D YAKCG +  +  VF  M ++DV+
Sbjct: 200 SACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVV 259

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP-DSITFLGLLCGCSHQGLVEEGVEYFHM 316
           SWNSMI  Y  +G   +A   F  ML AG    + +T   LL  C+H+G +  G+   H 
Sbjct: 260 SWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGM-CLHD 318

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            V +      +     ++D+Y + G+ E A    +     +   W  ++    +H
Sbjct: 319 QVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMH 373


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/565 (37%), Positives = 320/565 (56%), Gaps = 49/565 (8%)

Query: 33  SVSSSLSYAQLLFNQI--QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           + + S  YAQ +F  +  Q P+T  WNS ++A A+  SP+ AI  +  +    +  PDTF
Sbjct: 71  AFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC-PDTF 129

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T +  L+AC  +  L+  + LHG V + G+   + +   ++  YA+ G +  AR +F+ M
Sbjct: 130 TCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKM 189

Query: 151 PERDLVSWN-------------------------------SIISCYTQASFHLEALKLYE 179
           P+RD+V+WN                               S+I+ Y Q     EA+ L+ 
Sbjct: 190 PQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFA 249

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           +M    V  +  T+V +L++CA +GAL++G+ +H  +   GF  +V + N L+DMY KCG
Sbjct: 250 KMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCG 309

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            L+ A  VF  M +R V+SW++MI G  +HGR +EA+  F  M   G  P+ +TF+GLL 
Sbjct: 310 CLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLH 369

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE-VINTSSPSDP 358
            CSH GL+ EG  +F  M   Y + P I+HYGC+VDL  RAG L +A E ++N     + 
Sbjct: 370 ACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNG 429

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
           V+W  LLG+C++H+NVE+ E A+K+L++L+  + G YV+L+ IYA     E  AR RK +
Sbjct: 430 VVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFM 489

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
           K   +K TPGWS I +   VH+FV  ++SHPD + I+++ EE++   +  GY  + S+V 
Sbjct: 490 KDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVL 549

Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
           +     E    K  + HSEKLA+ FGL  TP  T +RI+KNLR            S   +
Sbjct: 550 LDIEEGEKV--KFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVN 607

Query: 527 RDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+++VRDR R+H F D  CSC DYW
Sbjct: 608 REIVVRDRNRFHCFNDNSCSCRDYW 632



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 149/330 (45%), Gaps = 35/330 (10%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER--DLVSWNSIISCYT 166
           +++H  +I++     ++  T +    A       A+ +F  + ++  +   WNS +    
Sbjct: 45  RQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALA 104

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
           +    ++A+ L+ R+R  DV  D FT   +L +C ++  L+ G  LH +  ++GF  ++Y
Sbjct: 105 EGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLY 164

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN-------------------------- 260
           + N +V +YA CG +  A  +F +M +RDV++WN                          
Sbjct: 165 LQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERN 224

Query: 261 -----SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
                SMI GY   G+  EAI  F +M  AG   + +T + +L  C+  G ++ G+   H
Sbjct: 225 VRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMR-IH 283

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
              +R+  K  ++    L+D+Y + G LE+A +V         V W  ++G   +H   E
Sbjct: 284 EYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAE 343

Query: 376 IGEIAMKNLVQLEAASAGDYVLLATIYACT 405
                  ++ Q+     G    +  ++AC+
Sbjct: 344 EALRLFSDMSQVGIEPNG-VTFIGLLHACS 372


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/528 (38%), Positives = 317/528 (60%), Gaps = 16/528 (3%)

Query: 37   SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
            S+  A+LLFN++      +W ++I   A+S    +A+  +  M  A L +P+  T+T  L
Sbjct: 496  SIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGL-KPNRVTYTSIL 554

Query: 97   KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
             AC    AL+  + +H  VI +G      V+  L+  Y+  G ++ AR VFD M +RD+V
Sbjct: 555  NACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIV 614

Query: 157  SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            ++N++I  Y   +   EALKL++R++ E +  D  T + +L++CA+ G+L     +H + 
Sbjct: 615  AYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLV 674

Query: 217  CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
             + G++    +GNALV  YAKCG+   A  VF +M KR+V+SWN++I G   HGRG + +
Sbjct: 675  LKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVL 734

Query: 277  SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
              F++M M G  PD +TF+ LL  CSH GL+EEG  YF  M   + + P I+HYGC+VDL
Sbjct: 735  QLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDL 794

Query: 337  YGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
             GRAG+L++   +I T    ++  +W  LLG+C+IH NV + E A ++ ++L+  +A  Y
Sbjct: 795  LGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVY 854

Query: 396  VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
            V L+ +YA     +  A+ RKL++  G+   PG SWIE+G+++H FV +D+SHP+++ IY
Sbjct: 855  VALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIY 914

Query: 456  RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
             +L+++ H  K  GY  D    +V     E   E +  +HSE+LAIA+GL +T  GT +R
Sbjct: 915  AELDKLTHAMKMEGYVPDTR--SVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIR 972

Query: 516  IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            I KNLR            +    R+++ RD  R+HHF+DG+CSCGDYW
Sbjct: 973  IFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 167/328 (50%), Gaps = 2/328 (0%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F ++ N    AWN++I   A+  +  +A   Y+ M    +  P+  T+   L AC    
Sbjct: 402 VFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGM-MPNKITYVILLNACVNPT 460

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           AL+  +E+H  V++ G+   + V   L+  YA  G I+ AR +F+ M  +D++SW ++I 
Sbjct: 461 ALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIG 520

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
              ++    EAL +++ M+   +  +  T   +L++C+   AL+ G  +H+   E G   
Sbjct: 521 GLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLAT 580

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
             +V N LV+MY+ CG++  A  VF RM +RD++++N+MI GY  H  G EA+  F ++ 
Sbjct: 581 DAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ 640

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  PD +T++ +L  C++ G +E   E  H +V +            LV  Y + G  
Sbjct: 641 EEGLKPDKVTYINMLNACANSGSLEWAKE-IHSLVLKDGYLSDTSLGNALVSTYAKCGSF 699

Query: 344 EKALEVINTSSPSDPVLWRTLLGSCKIH 371
             AL V +     + + W  ++G C  H
Sbjct: 700 SDALLVFDKMMKRNVISWNAIIGGCAQH 727



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 188/381 (49%), Gaps = 9/381 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           +LN YA     S+  A+ +F++++     +W  +I  +A       A   +  M    + 
Sbjct: 285 ILNMYA--KCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVV 342

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+  T+   L A     AL   + +H  ++ +G+E  + V T L++ YA  G  +  R 
Sbjct: 343 -PNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQ 401

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF+ +  RDL++WN++I    +     EA ++Y +M+ E +  +  T V LL++C +  A
Sbjct: 402 VFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTA 461

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L+ G  +H    + GF+  + V NAL+ MYA+CG++  A  +F++M ++D++SW +MI G
Sbjct: 462 LHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGG 521

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
               G G EA++ F+ M  AG  P+ +T+  +L  CS    ++ G    H  V    L  
Sbjct: 522 LAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWG-RRIHQQVIEAGLAT 580

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--N 383
                  LV++Y   G ++ A +V +  +  D V +  ++G    H    +G+ A+K  +
Sbjct: 581 DAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAH---NLGKEALKLFD 637

Query: 384 LVQLEAASAGDYVLLATIYAC 404
            +Q E         +  + AC
Sbjct: 638 RLQEEGLKPDKVTYINMLNAC 658



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 171/375 (45%), Gaps = 13/375 (3%)

Query: 3   LKKHARYVGLNKARQAHE--IHGEWLLNSYAISV-------SSSLSYAQLLFNQIQNPQ- 52
           LK+      L   R+ HE  I    +L+ Y ++          S+  A+ ++N++ + + 
Sbjct: 148 LKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTER 207

Query: 53  -TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111
              +WN+++  + Q     +A+     M    L+     T    L +C+   AL   +E+
Sbjct: 208 TVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRL-LSSCKSPSALECGREI 266

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           H   +++     V V+  ++  YA  G I  AR VFD M  + +VSW  II  Y      
Sbjct: 267 HVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHS 326

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
             A +++++M+ E V  +  T + +L++ +   AL  G  +H      G    + VG AL
Sbjct: 327 EIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTAL 386

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           V MYAKCG+      VF ++  RD+++WN+MI G    G  +EA   + QM   G  P+ 
Sbjct: 387 VKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNK 446

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
           IT++ LL  C +   +  G E  H  V +      I     L+ +Y R G ++ A  + N
Sbjct: 447 ITYVILLNACVNPTALHWGRE-IHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFN 505

Query: 352 TSSPSDPVLWRTLLG 366
                D + W  ++G
Sbjct: 506 KMVRKDIISWTAMIG 520



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 132/282 (46%), Gaps = 12/282 (4%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN---------GVIEAARSV 146
           + +C+ +K L +C E+   V        ++    ++  Y  N         G IE AR V
Sbjct: 139 VNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQV 198

Query: 147 FD--NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           ++  N  ER + SWN+++  Y Q  +  EALKL   M+   + L   T + LLSSC    
Sbjct: 199 WNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPS 258

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL  G  +H  A +   +  V V N +++MYAKCG++  A  VF +M  + V+SW  +I 
Sbjct: 259 ALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIG 318

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GY   G  + A   F++M   G  P+ IT++ +L   S    ++ G +  H  +     +
Sbjct: 319 GYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWG-KTVHSHILNAGHE 377

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
             +     LV +Y + G  +   +V       D + W T++G
Sbjct: 378 SDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 419


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 336/573 (58%), Gaps = 29/573 (5%)

Query: 3   LKKHARYVGLNKARQAHEI--------HG---EWLLNSYAISVSSSLSYAQLLFNQIQNP 51
           LK  +R   L++  Q H +        HG     L++ YA      +  A+ +F+++   
Sbjct: 131 LKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYA--NCGEVEVARRVFDEMSER 188

Query: 52  QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111
             + WNS+   + +S +  + +  ++ ML   + R D  T    L AC R+  L   + +
Sbjct: 189 NVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDI-RFDEVTLVSVLTACGRLADLELGEWI 247

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           + +V   G +    + T+L+  YA  G ++ AR +FD M  RD+V+W+++IS Y+QAS  
Sbjct: 248 NRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRC 307

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
            EAL L+  M+  ++  +  T+V +LSSCA +GAL  G ++H    +     +V +G AL
Sbjct: 308 REALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTAL 367

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           +D YAKCG+++S+  VF +M  ++VLSW  +I G   +G+G +A+ +F  ML     P+ 
Sbjct: 368 MDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPND 427

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI- 350
           +TF+G+L  CSH GLV+EG + F  M   + ++P I+HYGC+VD+ GRAG +E+A + I 
Sbjct: 428 VTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIK 487

Query: 351 NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410
           N     + V+WRTLL SCK+H+NVEIGE ++K L+ LE   +GDY+LL+ IYA     E 
Sbjct: 488 NMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWED 547

Query: 411 VARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY 470
             + R  +K  GIK TPG S IE+   +H+F  +D  H  ++ IY  +E++M + K  GY
Sbjct: 548 ALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGY 607

Query: 471 TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
             + +   +   + ED  E S ++HSEKLAIAFGL  +P GT++RI KNLR         
Sbjct: 608 VPNTAEARL--DAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNAT 665

Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              S  ++R+++VRDR R+HHF++G CSC DYW
Sbjct: 666 KLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 193/343 (56%), Gaps = 2/343 (0%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
            E LL S AI + +S+ YA  +F QI  P + A+N +IR F    SP +AI  +  M   
Sbjct: 59  AENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHEN 118

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
           S+ +PD FTF   LK C R++AL++ +++H  +++ G+     V   L+  YA  G +E 
Sbjct: 119 SV-QPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEV 177

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR VFD M ER++ +WNS+ + YT++    E +KL+  M   D+  D  TLV +L++C  
Sbjct: 178 ARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGR 237

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +  L +G +++R   E G   +  +  +LVDMYAKCG +D+A  +F +M +RDV++W++M
Sbjct: 238 LADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAM 297

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I GY    R  EA+  F +M  A   P+ IT + +L  C+  G +E G ++ H  + +  
Sbjct: 298 ISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETG-KWVHFFIKKKR 356

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +K  +     L+D Y + G +E ++EV       + + W  L+
Sbjct: 357 MKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLI 399


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/544 (40%), Positives = 313/544 (57%), Gaps = 19/544 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+ S A+S   S+ YA  +F+QI+ P +  +N++IR    S+   +A+  Y  ML  
Sbjct: 66  GSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLER 125

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +  PD FT+ F LKAC  + AL +  ++H  V ++G E  V V   L+  Y   G IE 
Sbjct: 126 GI-EPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEH 184

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG-LDGFTLVCLLSSCA 201
           A  VF+ M E+ + SW+SII  +       E L L   M  E     +   LV  LS+C 
Sbjct: 185 AGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACT 244

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
           H+G+ N+G  +H I        +V V  +L+DMY KCG+L+   CVF  M  ++  S+  
Sbjct: 245 HLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTV 304

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI G  +HGRG EA+  F  ML  G  PD + ++G+L  CSH GLV EG++ F+ M   +
Sbjct: 305 MIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEH 364

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEI 379
            +KP I+HYGC+VDL GRAG L++A ++I  S P  P  V+WR+LL +CK+H N+EIGEI
Sbjct: 365 MIKPTIQHYGCMVDLMGRAGMLKEAYDLIK-SMPIKPNDVVWRSLLSACKVHHNLEIGEI 423

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
           A +N+ +L   + GDY++LA +YA  K    VAR R  +    +  TPG+S +E    V+
Sbjct: 424 AAENIFRLNKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVY 483

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
           KFV  DKS P  + IY  ++++  + KF GYT D S V +     ED   +   +HS+KL
Sbjct: 484 KFVSQDKSQPICETIYDMIQQMEWQLKFEGYTPDMSQVLL--DVDEDEKRQRLKHHSQKL 541

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           AIAF L  T +G+ +RI +NLR            S+ Y R++ VRDR R+HHF+DG CSC
Sbjct: 542 AIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSC 601

Query: 548 GDYW 551
            DYW
Sbjct: 602 KDYW 605


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/571 (38%), Positives = 335/571 (58%), Gaps = 54/571 (9%)

Query: 32  ISVSSS---LSYAQLLFNQ-IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML-MASLSR 86
           I VSSS   L ++ L+FN  +  P   A+N+L++AF+Q  +    I Y+N+ L + +   
Sbjct: 65  IGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPN 124

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE------------------------- 121
           PD +TFT  LKAC  +  + + Q++H FV + G E                         
Sbjct: 125 PDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKL 184

Query: 122 ------RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
                 R VV    L+ GY  +G+++ AR VFD M E++LVSW+++IS Y +   + +A+
Sbjct: 185 FDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAI 244

Query: 176 KLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           +L+ +M+ E  +  +  TLV +LS+CAH+GAL++G ++HR          +++GNAL DM
Sbjct: 245 ELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADM 304

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAKCG +  A  VF  M +RDV+SW+ +I+G  ++G  +EA +FF +M+  G  P+ I+F
Sbjct: 305 YAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISF 364

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           +GLL  C+H GLV++G+EYF MM   Y + P I+HYGC+VDL  RAG+L++A  +IN S 
Sbjct: 365 MGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLIN-SM 423

Query: 355 PSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           P  P  ++W  LLG C+I+++ E GE  +  +++L++  +G  V LA +YA     +  A
Sbjct: 424 PMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAA 483

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
             R  ++ N    TPG SWIEI N V++F + D SHP +  IY  + E+  + K  GY  
Sbjct: 484 SCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKP 543

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
              LV  +    E   E + + HSEKLA+AFGL  T +GT++RIVKNLR           
Sbjct: 544 KTDLVIHNIDEEEK--EDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKI 601

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S    R+++VRDR R+HHF+DG CSC DYW
Sbjct: 602 ISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/535 (39%), Positives = 311/535 (58%), Gaps = 23/535 (4%)

Query: 38   LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD-------TF 90
            L  A+ LF++I      +W S+I  + Q+     A+  +   L       D       + 
Sbjct: 2066 LKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 2125

Query: 91   TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
                 L AC RV      + +HGFV++ G++  + V   LM  YA  G    ++ VFD M
Sbjct: 2126 VMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWM 2185

Query: 151  PERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMG 209
             E+D +SWNS+I+ Y Q+    EAL+++  M R   V  +  TL  +L +CAH GAL  G
Sbjct: 2186 EEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG 2245

Query: 210  IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
              +H    +M    +V VG +++DMY KCG ++ A   F RM++++V SW +M+ GYG+H
Sbjct: 2246 KCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMH 2305

Query: 270  GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
            GR  EA+  F +M+ AG  P+ ITF+ +L  CSH GLVEEG  +F+ M  +Y+++PGI+H
Sbjct: 2306 GRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEH 2365

Query: 330  YGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
            YGC+VDL+GRAG L +A  +I       D V+W +LLG+C+IH+NV++GEIA + L +L+
Sbjct: 2366 YGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELD 2425

Query: 389  AASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSH 448
              + G YVLL+ +YA       V R R L+K+  +   PG+S +E+  +VH F+V DK H
Sbjct: 2426 PDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEH 2485

Query: 449  PDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
            P  +MIY+ LE++    + IGY  +  + +V     E+  E     HSEKLA+AFG+  +
Sbjct: 2486 PHHEMIYKYLEKLTLELQKIGYVPN--MTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNS 2543

Query: 509  PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              GT++ I+KNLR            S    RD +VRD  R+HHF+DG+CSCGDYW
Sbjct: 2544 APGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 191/347 (55%), Gaps = 32/347 (9%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S    ++YA LLF QIQNP T  WN +IRA   +    QA+  Y +M+   ++  D FTF
Sbjct: 70  STHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIA-ADKFTF 128

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYE------------------------------- 121
            F +KAC    +++  + +HG +I+ G+                                
Sbjct: 129 PFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRV 188

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           R VV  T ++ G  + G ++ AR +FD +P +++VSW ++I+ Y +     EAL+L++RM
Sbjct: 189 RNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM 248

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           + E++  + +T+V L+ +C  +G L +G  +H  A +      VY+G AL+DMY+KCG++
Sbjct: 249 QAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSI 308

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
             A  VF  M ++ + +WNSMI   GVHG G EA++ F +M      PD+ITF+G+LC C
Sbjct: 309 KDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCAC 368

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
            H   V+EG  YF  M   Y + P  +HY C+ +LY R+  L++A +
Sbjct: 369 VHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK 415



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 178/373 (47%), Gaps = 15/373 (4%)

Query: 41   AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
            A   +  +      +WNS+I   A+    ++A+  ++ +    L  P   +F  T+K+C 
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLI-PTRSSFPCTIKSCS 2026

Query: 101  RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             +  L   +  H      G+E  + VS+ L+  Y+  G ++ AR++FD +P R++VSW S
Sbjct: 2027 ALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTS 2086

Query: 161  IISCYTQASFHLEALKLY-----ERMRFED---VGLDGFTLVCLLSSCAHVGALNMGIFL 212
            +I+ Y Q      AL L+     E    ED   V LD   +V +LS+C+ V    +   +
Sbjct: 2087 MITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGV 2146

Query: 213  HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
            H    + GF  S+ VGN L+D YAKCG    +  VF  M ++D +SWNSMI  Y   G  
Sbjct: 2147 HGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLS 2206

Query: 273  DEAISFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
             EA+  F  M+   G   +++T   +L  C+H G +  G +  H  V + +L+  +    
Sbjct: 2207 GEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG-KCIHDQVIKMDLEYNVCVGT 2265

Query: 332  CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEIAMKNLVQLEAA 390
             ++D+Y + G++E A +  +     +   W  ++    +H R  E  +I  K    + A 
Sbjct: 2266 SIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYK---MVRAG 2322

Query: 391  SAGDYVLLATIYA 403
               +Y+   ++ A
Sbjct: 2323 VKPNYITFVSVLA 2335



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 164/370 (44%), Gaps = 43/370 (11%)

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
           F L+ C+  K L   +++H  +IRSG     +++  L+  Y+ +G I  A  +F  +   
Sbjct: 32  FLLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
              +WN II   T      +AL LY+ M  + +  D FT   ++ +C +  ++++G  +H
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS------------ 261
               + GF   V+V N L+D Y KCG+   A  VF +MR R+V+SW +            
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQ 208

Query: 262 -------------------MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
                              MI GY  + + +EA+  FK+M      P+  T + L+  C+
Sbjct: 209 EARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACT 268

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
             G++  G    H    +  ++ G+     L+D+Y + G ++ A+EV  T        W 
Sbjct: 269 EMGILTLG-RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWN 327

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD--YVLLATIYACT---KDEEGVARTRKL 417
           +++ S  +H    +G+ A+    ++E  +        +  + AC      +EG A   ++
Sbjct: 328 SMITSLGVH---GLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRM 384

Query: 418 IKSNGIKTTP 427
            +  GI   P
Sbjct: 385 TQHYGIAPIP 394



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 109/280 (38%), Gaps = 43/280 (15%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL +C +   L     +H      G      +   L+ +Y+  G +  A  +F +++   
Sbjct: 33  LLQNCKNFKHLRQ---IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
             +WN +I    ++G  ++A+  +K M+  G   D  TF  ++  C++   ++ G +  H
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG-KVVH 148

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL------GSCK 369
             + +Y     +     L+D Y + G    AL+V       + V W T++      G  +
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQ 208

Query: 370 IHRNVEIGEIAMKNLV-------------------------QLEAASAGDYVLLATIYAC 404
             R +   EI  KN+V                         Q E     +Y +++ I AC
Sbjct: 209 EARRI-FDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKAC 267

Query: 405 TKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           T  E G+    + I    IK       IEIG  +   ++D
Sbjct: 268 T--EMGILTLGRGIHDYAIKNC-----IEIGVYLGTALID 300


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/535 (39%), Positives = 311/535 (58%), Gaps = 23/535 (4%)

Query: 38   LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD-------TF 90
            L  A+ LF++I      +W S+I  + Q+     A+  +   L       D       + 
Sbjct: 1193 LKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 1252

Query: 91   TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
                 L AC RV      + +HGFV++ G++  + V   LM  YA  G    ++ VFD M
Sbjct: 1253 VMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWM 1312

Query: 151  PERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMG 209
             E+D +SWNS+I+ Y Q+    EAL+++  M R   V  +  TL  +L +CAH GAL  G
Sbjct: 1313 EEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG 1372

Query: 210  IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
              +H    +M    +V VG +++DMY KCG ++ A   F RM++++V SW +M+ GYG+H
Sbjct: 1373 KCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMH 1432

Query: 270  GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
            GR  EA+  F +M+ AG  P+ ITF+ +L  CSH GLVEEG  +F+ M  +Y+++PGI+H
Sbjct: 1433 GRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEH 1492

Query: 330  YGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
            YGC+VDL+GRAG L +A  +I       D V+W +LLG+C+IH+NV++GEIA + L +L+
Sbjct: 1493 YGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELD 1552

Query: 389  AASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSH 448
              + G YVLL+ +YA       V R R L+K+  +   PG+S +E+  +VH F+V DK H
Sbjct: 1553 PDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEH 1612

Query: 449  PDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
            P  +MIY+ LE++    + IGY  +  + +V     E+  E     HSEKLA+AFG+  +
Sbjct: 1613 PHHEMIYKYLEKLTLELQKIGYVPN--MTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNS 1670

Query: 509  PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              GT++ I+KNLR            S    RD +VRD  R+HHF+DG+CSCGDYW
Sbjct: 1671 APGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 191/347 (55%), Gaps = 32/347 (9%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S    ++YA LLF QIQNP T  WN +IRA   +    QA+  Y +M+   ++  D FTF
Sbjct: 70  STHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIA-ADKFTF 128

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYE------------------------------- 121
            F +KAC    +++  + +HG +I+ G+                                
Sbjct: 129 PFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRV 188

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           R VV  T ++ G  + G ++ AR +FD +P +++VSW ++I+ Y +     EAL+L++RM
Sbjct: 189 RNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM 248

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           + E++  + +T+V L+ +C  +G L +G  +H  A +      VY+G AL+DMY+KCG++
Sbjct: 249 QAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSI 308

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
             A  VF  M ++ + +WNSMI   GVHG G EA++ F +M      PD+ITF+G+LC C
Sbjct: 309 KDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCAC 368

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
            H   V+EG  YF  M   Y + P  +HY C+ +LY R+  L++A +
Sbjct: 369 VHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK 415



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 185/383 (48%), Gaps = 17/383 (4%)

Query: 31   AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
             +S+SS+L  A   +  +      +WNS+I   A+    ++A+  ++ +    L  P   
Sbjct: 1087 PVSLSSNL--ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLI-PTRS 1143

Query: 91   TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
            +F  T+K+C  +  L   +  H      G+E  + VS+ L+  Y+  G ++ AR++FD +
Sbjct: 1144 SFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI 1203

Query: 151  PERDLVSWNSIISCYTQASFHLEALKLY-----ERMRFED---VGLDGFTLVCLLSSCAH 202
            P R++VSW S+I+ Y Q      AL L+     E    ED   V LD   +V +LS+C+ 
Sbjct: 1204 PLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSR 1263

Query: 203  VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
            V    +   +H    + GF  S+ VGN L+D YAKCG    +  VF  M ++D +SWNSM
Sbjct: 1264 VSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSM 1323

Query: 263  IVGYGVHGRGDEAISFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
            I  Y   G   EA+  F  M+   G   +++T   +L  C+H G +  G +  H  V + 
Sbjct: 1324 IAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG-KCIHDQVIKM 1382

Query: 322  NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEIA 380
            +L+  +     ++D+Y + G++E A +  +     +   W  ++    +H R  E  +I 
Sbjct: 1383 DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIF 1442

Query: 381  MKNLVQLEAASAGDYVLLATIYA 403
             K    + A    +Y+   ++ A
Sbjct: 1443 YK---MVRAGVKPNYITFVSVLA 1462



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 164/370 (44%), Gaps = 43/370 (11%)

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
           F L+ C+  K L   +++H  +IRSG     +++  L+  Y+ +G I  A  +F  +   
Sbjct: 32  FLLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
              +WN II   T      +AL LY+ M  + +  D FT   ++ +C +  ++++G  +H
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS------------ 261
               + GF   V+V N L+D Y KCG+   A  VF +MR R+V+SW +            
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQ 208

Query: 262 -------------------MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
                              MI GY  + + +EA+  FK+M      P+  T + L+  C+
Sbjct: 209 EARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACT 268

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
             G++  G    H    +  ++ G+     L+D+Y + G ++ A+EV  T        W 
Sbjct: 269 EMGILTLG-RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWN 327

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD--YVLLATIYACT---KDEEGVARTRKL 417
           +++ S  +H    +G+ A+    ++E  +        +  + AC      +EG A   ++
Sbjct: 328 SMITSLGVH---GLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRM 384

Query: 418 IKSNGIKTTP 427
            +  GI   P
Sbjct: 385 TQHYGIAPIP 394



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 109/280 (38%), Gaps = 43/280 (15%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL +C +   L     +H      G      +   L+ +Y+  G +  A  +F +++   
Sbjct: 33  LLQNCKNFKHLRQ---IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
             +WN +I    ++G  ++A+  +K M+  G   D  TF  ++  C++   ++ G +  H
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG-KVVH 148

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL------GSCK 369
             + +Y     +     L+D Y + G    AL+V       + V W T++      G  +
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQ 208

Query: 370 IHRNVEIGEIAMKNLV-------------------------QLEAASAGDYVLLATIYAC 404
             R +   EI  KN+V                         Q E     +Y +++ I AC
Sbjct: 209 EARRI-FDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKAC 267

Query: 405 TKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           T  E G+    + I    IK       IEIG  +   ++D
Sbjct: 268 T--EMGILTLGRGIHDYAIKNC-----IEIGVYLGTALID 300


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/536 (40%), Positives = 316/536 (58%), Gaps = 28/536 (5%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+ + A+S   SL YAQ +F+QI +P    WN+LIRA+A S +P Q++  +  ML  S  
Sbjct: 73  LITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPD 132

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD FTF F +KA   ++ L   +  HG VI+      V +  +L+  YA  G +     
Sbjct: 133 FPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYR 192

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF N P RD+VSWNS+I+ + Q     EAL+L++ M  ++V  +G T+V +LS+CA    
Sbjct: 193 VFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSD 252

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
              G ++H         ES+ + NA++DMY KCG+++ A  +F +M ++D++SW +M+VG
Sbjct: 253 FEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVG 312

Query: 266 Y------------GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           Y             +HG G +AI+ F +M      P+++TF  +LC CSH GLVEEG  +
Sbjct: 313 YAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTF 372

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIH 371
           F+ M   Y + PG+KHY C+VD+ GRAG LE+A+E+I    P  P   +W  LLG+C IH
Sbjct: 373 FNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIE-KMPMAPAASVWGALLGACTIH 431

Query: 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSW 431
            NV + E A   L++LE  + G YVLL+ IYA     + V+  RKL++  G+K  PG S 
Sbjct: 432 ENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSS 491

Query: 432 IEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKS 491
           IE+   VH+F+V D SHP A  IY KL+EI+ R + IGY  ++S + +     ED  E++
Sbjct: 492 IEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHL-LQLVEEEDVKEQA 550

Query: 492 SAYHSEKLAIAFGLATTPDGTSLRIVKNLR------SIA------YSRDLIVRDRV 535
              HSEKLAIAFGL +T     +RIVKNLR      S+A      Y R++++RDRV
Sbjct: 551 LFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRV 606


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/617 (37%), Positives = 344/617 (55%), Gaps = 73/617 (11%)

Query: 3   LKKHARYVGLNKAR----QAHEIHGEWLLNSYAISVS------------SSLSYAQLLFN 46
           L  H+ +V L K R    Q  +IH + + +  A + S             +LS+A+++F+
Sbjct: 52  LPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFD 111

Query: 47  QIQN-PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP---DTFTFTFTLKACERV 102
           Q  + P T  WN +I+A++++ S  ++++ ++ ML  +  RP   D +TFTF   AC R 
Sbjct: 112 QFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQML--AHGRPTSADKYTFTFVFTACSRH 169

Query: 103 KALNKCQE-LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161
             L    E +HG V++ GYE  + V  +L+  Y+    +  A+ VFD MP+RD+++W S+
Sbjct: 170 PTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSV 229

Query: 162 ISCYTQASFHLEALKLYERM------------------RFEDVGLDGF------------ 191
           +  Y      + A +L++ M                  RF +  L  F            
Sbjct: 230 VKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPN 289

Query: 192 --TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
              LV +LS+CAH+GAL+ G ++H    +   + S  +  AL+DMYAKCG +D A  VF 
Sbjct: 290 EAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFD 349

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            + KRD+L+W SMI G  +HG G E +  F +ML  GF PD IT LG+L GCSH GLVEE
Sbjct: 350 GLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEE 409

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGS 367
           G+  FH M+  + + P ++HYGCL+DL GRAG+LE A E I  S P +P  V WR LL +
Sbjct: 410 GLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIK-SMPMEPDVVAWRALLSA 468

Query: 368 CKIHRNVEIGEIAMKNLVQLEAAS-AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTT 426
           C+IH +V++GE  + ++ +L   S  G YVLL+ +YA     E V + RK +   G +  
Sbjct: 469 CRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGC 528

Query: 427 PGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSED 486
           PG SWIEI   VH+F+  DK HP    I +KL E++ R    G     +   +   + ED
Sbjct: 529 PGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEED 588

Query: 487 FLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDR 534
             E++ ++HSEKLA+AFGL +T +GT +RI KNLR            S+ ++R+++VRDR
Sbjct: 589 -KEQAVSWHSEKLAVAFGLLSTQEGT-IRITKNLRTCEDCHSAMKTISLVFNREIVVRDR 646

Query: 535 VRYHHFRDGLCSCGDYW 551
            R+H FR G CSC DYW
Sbjct: 647 SRFHTFRYGNCSCTDYW 663


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/601 (37%), Positives = 341/601 (56%), Gaps = 61/601 (10%)

Query: 6   HARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
           HA ++   +    H +    LL    +S    + YA+  F+QI +P   +WN++IRA A 
Sbjct: 35  HAHFIKTGQIH--HPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALAD 92

Query: 66  S-------LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           S       ++ L+A+ Y++HML   L  P+ FTF   LKAC ++  + + ++LHGFV++ 
Sbjct: 93  SDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKL 152

Query: 119 GYERCVVVSTNLMR--------------------------------GYAANGVIEAARSV 146
           G      V +NL+R                                GY   G + A+R +
Sbjct: 153 GLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASREL 212

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD+MP + +VSWN +IS   Q     EA++++  M+  DV  +  TLV +L + + +GA+
Sbjct: 213 FDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAI 272

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVG 265
            +G ++H  A +        +G+AL+DMY+KCG++D A  VF  +R K++ ++W+++I G
Sbjct: 273 ELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGG 332

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
             +HGR  +A+  F +M  AG  P  + ++G+L  CSH GLVEEG   ++ MV+   L P
Sbjct: 333 LAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLP 392

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            I+HYGC+VDL GRAG LE+A ++I N     D V+ + LLG+CK+H N+E+GE   K L
Sbjct: 393 RIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKIL 452

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           +      +G YV L+ ++A   + EGV + R  +K   I+  PG SWIE+   +H+F+V+
Sbjct: 453 MGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHEFLVE 512

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA--YHSEKLAIA 502
           D SHP A+ I+  LEE+  R + +GY  + + V +    + D  EK SA  YHSEK+AIA
Sbjct: 513 DDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLL----NMDEKEKQSALHYHSEKIAIA 568

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FGL +T   T L+IVKNLR            S  Y+R +IVRDR R+HHF +G CSC DY
Sbjct: 569 FGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDY 628

Query: 551 W 551
           W
Sbjct: 629 W 629


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/530 (39%), Positives = 317/530 (59%), Gaps = 17/530 (3%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           SS+SYA+ LF  +  P    +NS+ R +++  +PL+    +  +L   +  PD +TF   
Sbjct: 77  SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGI-LPDNYTFPSL 135

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LKAC   KAL + ++LH   ++ G +  V V   L+  Y     +++AR VFD + E  +
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCV 195

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           V +N++I+ Y + +   EAL L+  M+ + +  +  TL+ +LSSCA +G+L++G ++H+ 
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKY 255

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A +  F + V V  AL+DM+AKCG+LD A  +F +MR +D  +W++MIV Y  HG+ +++
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKS 315

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F++M      PD ITFLGLL  CSH G VEEG +YF  MVS++ + P IKHYG +VD
Sbjct: 316 MLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVD 375

Query: 336 LYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L  RAG LE A E I+    SP+ P+LWR LL +C  H N+++ E   + + +L+ +  G
Sbjct: 376 LLSRAGNLEDAYEFIDKLPISPT-PMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGG 434

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
           DYV+L+ +YA  K  E V   RK++K       PG S IE+ N VH+F   D        
Sbjct: 435 DYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTK 494

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           ++R L+E++   K  GY  D S+V V  + ++   E +  YHSEKLAI FGL  TP GT+
Sbjct: 495 LHRALDEMVKELKLSGYVPDTSMV-VHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTT 553

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R+VKNLR            S+ + R +++RD  R+HHF DG CSCGD+W
Sbjct: 554 IRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/531 (38%), Positives = 313/531 (58%), Gaps = 19/531 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL   Q +F+++      +WNS+I+A+  +  PL+AI  +  M ++ + +PD  T     
Sbjct: 297 SLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRI-QPDCLTLISLA 355

Query: 97  KACERVKALNKCQELHGFVIRSG-YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
               ++  +  C+ + GF +R G +   + +   ++  YA  G++++AR+VF+ +P +D+
Sbjct: 356 SILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDV 415

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFE--DVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           +SWN+IIS Y Q  F  EA+++Y  M  E  ++  +  T V +L +C+  GAL  G+ LH
Sbjct: 416 ISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLH 475

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
               + G    V+VG +L DMY KCG LD A  +F ++ + + + WN++I  +G HG G+
Sbjct: 476 GRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGE 535

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           +A+  FK+ML  G  PD ITF+ LL  CSH GLV+EG   F MM + Y + P +KHYGC+
Sbjct: 536 KAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCM 595

Query: 334 VDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           VDLYGRAG+LE AL  I +     D  +W  LL +C++H NV++G+IA ++L ++E    
Sbjct: 596 VDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHV 655

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
           G +VLL+ +YA     EGV   R +    G++ TPGWS +E+ N+V  F   +++HP  +
Sbjct: 656 GYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYE 715

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            +YR+L  +  + K +GY  D   V       +D  E     HSE+LA+AF L TTP  T
Sbjct: 716 EMYRELTALHEKLKMVGYVPDHRFVL--QDVEDDEKEHILMSHSERLAMAFALITTPAKT 773

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++RI KNLR            S    R++IVRD  R+HHF++G+CSCGDYW
Sbjct: 774 TIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 197/397 (49%), Gaps = 24/397 (6%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +++ A+  F+ I N    AWN +I  + ++    + I  ++  +++S  +PD  TF   L
Sbjct: 101 NVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVL 160

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           KAC  V   NK   +H   ++ G+   V V+ +L+  Y   G +  AR +FD MP RD+ 
Sbjct: 161 KACRNVTDGNK---IHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMG 217

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++IS Y Q+    EAL L + +R     +D  T+V LLS+C   G  N G+ +H  +
Sbjct: 218 SWNAMISGYCQSGNAKEALTLSDGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYS 273

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + G    ++V N L+D+YA+ G+L     VF RM  RD++SWNS+I  Y ++ +   AI
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-----IKHYG 331
             F++M ++   PD +T + L    S  G +          V  + L+ G     I    
Sbjct: 334 LLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRS-----VQGFTLRKGWFLEDITIGN 388

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA- 390
            +V +Y + G ++ A  V N     D + W T++ S           I M N+++ E   
Sbjct: 389 AVVVMYAKLGLVDSARAVFNWLPNKDVISWNTII-SGYAQNGFASEAIEMYNIMEEEGGE 447

Query: 391 -SAGDYVLLATIYACTKD---EEGVARTRKLIKSNGI 423
            SA     ++ + AC++     +G+    +L+K NG+
Sbjct: 448 ISANQGTWVSVLPACSQAGALRQGMKLHGRLLK-NGL 483



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 148/313 (47%), Gaps = 18/313 (5%)

Query: 54  QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
           Q+  +++R F+ S + LQ  +   +    S    D  T     + C  +++  KC  LH 
Sbjct: 25  QSVGAVVREFSASANALQDCWKNGN---ESKEIDDVHTL---FRYCTNLQSA-KC--LHA 75

Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
            ++ S   + V +S  L+  Y   G +  AR  FD++  RD+ +WN +IS Y +A +  E
Sbjct: 76  RLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSE 135

Query: 174 ALKLYER-MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
            ++ +   M    +  D  T   +L +C +V   N    +H +A + GF+  VYV  +L+
Sbjct: 136 VIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNK---IHCLALKFGFMWDVYVAASLI 192

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
            +Y + G + +A  +F  M  RD+ SWN+MI GY   G   EA++    +       DS+
Sbjct: 193 HLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAM----DSV 248

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           T + LL  C+  G    GV   H    ++ L+  +     L+DLY   G L+   +V + 
Sbjct: 249 TVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDR 307

Query: 353 SSPSDPVLWRTLL 365
               D + W +++
Sbjct: 308 MYVRDLISWNSII 320



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 6/150 (4%)

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
           +++V +   LV++Y   GN+  A   F  +  RDV +WN MI GYG  G   E I  F  
Sbjct: 83  IQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSL 142

Query: 282 -MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            ML +G  PD  TF  +L  C +   V +G +  H +  ++     +     L+ LY R 
Sbjct: 143 FMLSSGLQPDYRTFPSVLKACRN---VTDGNK-IHCLALKFGFMWDVYVAASLIHLYCRY 198

Query: 341 GKLEKALEVINTSSPSDPVLWRTLL-GSCK 369
           G +  A  + +     D   W  ++ G C+
Sbjct: 199 GAVVNARILFDEMPTRDMGSWNAMISGYCQ 228


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/545 (39%), Positives = 324/545 (59%), Gaps = 32/545 (5%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMASLSRPDTFTFTF 94
           S ++YA  +F+ I+N  +  WN+LIRA A  +S   +A   Y  ML    S PD  TF F
Sbjct: 74  SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPF 133

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            LKAC  +   ++ +++H  +++ G+   V V+  L+  Y + G ++ AR VFD MPER 
Sbjct: 134 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 193

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMR--FEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           LVSWNS+I    +   +  AL+L+  M+  FE    DG+T+  +LS+CA +G+L++G + 
Sbjct: 194 LVSWNSMIDALVRFGEYDSALQLFREMQRSFEP---DGYTMQSVLSACAGLGSLSLGTWA 250

Query: 213 HRI---ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
           H      C++     V V N+L++MY KCG+L  A  VF  M+KRD+ SWN+MI+G+  H
Sbjct: 251 HAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATH 310

Query: 270 GRGDEAISFFKQML--MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           GR +EA++FF +M+       P+S+TF+GLL  C+H+G V +G +YF MMV  Y ++P +
Sbjct: 311 GRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPAL 370

Query: 328 KHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSC-KIHRNVEIGEIAMKNLV 385
           +HYGC+VDL  RAG + +A++ V++     D V+WR+LL +C K   +VE+ E   +N++
Sbjct: 371 EHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNII 430

Query: 386 QLEAAS-------AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
             +  +       +G YVLL+ +YA       V   RKL+  +GI+  PG S IEI    
Sbjct: 431 GTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGIS 490

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           H+F   D SHP    IY++L+ I  R + IGY  D S   +  ++++   E S   HSE+
Sbjct: 491 HEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSER 550

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LAIAFGL   P  T +RI KNLR            S  ++ ++IVRDRVR+HHF+DG CS
Sbjct: 551 LAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCS 610

Query: 547 CGDYW 551
           C DYW
Sbjct: 611 CLDYW 615


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/539 (40%), Positives = 319/539 (59%), Gaps = 33/539 (6%)

Query: 30  YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
           YA++V S L         + +P   + N+++R  A S  P  A+  +       L+ PDT
Sbjct: 74  YAVTVLSCL---------LPDPDPFSLNTVLRIAASSAHPRIALALHRR----RLAPPDT 120

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
            T+   L+AC R+ AL + + LH    ++G    V V  +L+  Y A G+ E+A  VFD 
Sbjct: 121 HTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDE 180

Query: 150 MP--ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           +P  ER+LVSWNS+++ +       E L ++      D+  DGFT+V +L++CA +GAL 
Sbjct: 181 IPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALT 240

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGY 266
           +G  +H  A ++G V + +VGNAL+D+YAKCG ++ A+ VF  M   R V+SW S+IVG 
Sbjct: 241 LGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGL 300

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
             +G G +A+  F  M      P  IT +G+L  CSH GLV++G  YF+ M  +Y + PG
Sbjct: 301 AGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPG 360

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNL 384
           I+H GC+VDL GRAG++E+A   I T+ P +P  V+WRTLLG+C +H+ +E+GE A   L
Sbjct: 361 IEHLGCMVDLLGRAGRVEEAHNYI-TTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARL 419

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           V+L+   +GDYVLL+ +YA           RK + ++G++  PG S +E+ N V++FV+ 
Sbjct: 420 VELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMG 479

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D+SHP++D IY+ L EI  R +  GY    S   V     E+  E +  YHSE+LAIAF 
Sbjct: 480 DRSHPESDQIYQTLAEIAERLRCQGYVPRTS--NVLADIEEEEKETALNYHSERLAIAFA 537

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L  +  G+ +RIVKNLR            S  Y R++IVRDR R+HHF+ G CSC DYW
Sbjct: 538 LLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/545 (39%), Positives = 324/545 (59%), Gaps = 32/545 (5%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMASLSRPDTFTFTF 94
           S ++YA  +F+ I+N  +  WN+LIRA A  +S   +A   Y  ML    S PD  TF F
Sbjct: 88  SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPF 147

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            LKAC  +   ++ +++H  +++ G+   V V+  L+  Y + G ++ AR VFD MPER 
Sbjct: 148 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 207

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMR--FEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           LVSWNS+I    +   +  AL+L+  M+  FE    DG+T+  +LS+CA +G+L++G + 
Sbjct: 208 LVSWNSMIDALVRFGEYDSALQLFREMQRSFEP---DGYTMQSVLSACAGLGSLSLGTWA 264

Query: 213 HRI---ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
           H      C++     V V N+L++MY KCG+L  A  VF  M+KRD+ SWN+MI+G+  H
Sbjct: 265 HAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATH 324

Query: 270 GRGDEAISFFKQML--MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           GR +EA++FF +M+       P+S+TF+GLL  C+H+G V +G +YF MMV  Y ++P +
Sbjct: 325 GRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPAL 384

Query: 328 KHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSC-KIHRNVEIGEIAMKNLV 385
           +HYGC+VDL  RAG + +A++ V++     D V+WR+LL +C K   +VE+ E   +N++
Sbjct: 385 EHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNII 444

Query: 386 QLEAAS-------AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
             +  +       +G YVLL+ +YA       V   RKL+  +GI+  PG S IEI    
Sbjct: 445 GTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGIS 504

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           H+F   D SHP    IY++L+ I  R + IGY  D S   +  ++++   E S   HSE+
Sbjct: 505 HEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSER 564

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LAIAFGL   P  T +RI KNLR            S  ++ ++IVRDRVR+HHF+DG CS
Sbjct: 565 LAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCS 624

Query: 547 CGDYW 551
           C DYW
Sbjct: 625 CLDYW 629


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/545 (39%), Positives = 324/545 (59%), Gaps = 32/545 (5%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMASLSRPDTFTFTF 94
           S ++YA  +F+ I+N  +  WN+LIRA A  +S   +A   Y  ML    S PD  TF F
Sbjct: 97  SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPF 156

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            LKAC  +   ++ +++H  +++ G+   V V+  L+  Y + G ++ AR VFD MPER 
Sbjct: 157 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 216

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMR--FEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           LVSWNS+I    +   +  AL+L+  M+  FE    DG+T+  +LS+CA +G+L++G + 
Sbjct: 217 LVSWNSMIDALVRFGEYDSALQLFREMQRSFEP---DGYTMQSVLSACAGLGSLSLGTWA 273

Query: 213 HRI---ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
           H      C++     V V N+L++MY KCG+L  A  VF  M+KRD+ SWN+MI+G+  H
Sbjct: 274 HAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATH 333

Query: 270 GRGDEAISFFKQML--MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           GR +EA++FF +M+       P+S+TF+GLL  C+H+G V +G +YF MMV  Y ++P +
Sbjct: 334 GRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPAL 393

Query: 328 KHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSC-KIHRNVEIGEIAMKNLV 385
           +HYGC+VDL  RAG + +A++ V++     D V+WR+LL +C K   +VE+ E   +N++
Sbjct: 394 EHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNII 453

Query: 386 QLEAAS-------AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
             +  +       +G YVLL+ +YA       V   RKL+  +GI+  PG S IEI    
Sbjct: 454 GTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGIS 513

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           H+F   D SHP    IY++L+ I  R + IGY  D S   +  ++++   E S   HSE+
Sbjct: 514 HEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSER 573

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LAIAFGL   P  T +RI KNLR            S  ++ ++IVRDRVR+HHF+DG CS
Sbjct: 574 LAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCS 633

Query: 547 CGDYW 551
           C DYW
Sbjct: 634 CLDYW 638


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/528 (38%), Positives = 313/528 (59%), Gaps = 16/528 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A+L+F+++      +W ++I   A+S    +A+  Y  M  A +  P+  T+T  L
Sbjct: 378 SIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGV-EPNRVTYTSIL 436

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC    AL   + +H  V+ +G      V   L+  Y+  G ++ AR VFD M +RD+V
Sbjct: 437 NACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIV 496

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           ++N++I  Y   +   EALKL++R++ E +  D  T + +L++CA+ G+L     +H + 
Sbjct: 497 AYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLV 556

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF     VGNALV  YAKCG+   A  VF +M KR+V+SWN++I G   HGRG +A+
Sbjct: 557 RKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDAL 616

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F++M M G  PD +TF+ LL  CSH GL+EEG  YF  M   + + P I+HYGC+VDL
Sbjct: 617 QLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDL 676

Query: 337 YGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GRAG+L++A  +I T    ++  +W  LLG+C+IH NV + E A ++ ++L+  +A  Y
Sbjct: 677 LGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVY 736

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V L+ +YA     +  A+ RKL++  G+   PG SWI++G+++H FV +D+SHP ++ IY
Sbjct: 737 VALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIY 796

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
            +L+ + H  K  GY  D    +V     E   E +  +HSE+LAIA+GL +TP GT + 
Sbjct: 797 AELDRLTHAMKMKGYVPDTR--SVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGTRIH 854

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           I KNLR            S    R++I RD  R+HHF+DG+CSCGDYW
Sbjct: 855 IFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 180/370 (48%), Gaps = 6/370 (1%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           G   H+R   LN   ++    G  L+  YA     S    + +F ++ N    AWN++I 
Sbjct: 246 GKAVHSRI--LNAGHESDTAVGTALVKMYA--KCGSYKDCRQVFEKLVNRDLIAWNTMIG 301

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
             A+     +A   YN M    +  P+  T+   L AC    AL+  +E+H  V ++G+ 
Sbjct: 302 GLAEGGYWEEASEVYNQMQREGV-MPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFT 360

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
             + V   L+  Y+  G I+ AR VFD M  +D++SW ++I    ++ F  EAL +Y+ M
Sbjct: 361 SDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEM 420

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           +   V  +  T   +L++C+   AL  G  +H+   E G     +VGN LV+MY+ CG++
Sbjct: 421 QQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSV 480

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
             A  VF RM +RD++++N+MI GY  H  G EA+  F ++   G  PD +T++ +L  C
Sbjct: 481 KDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNAC 540

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
           ++ G +E   E  H +V +            LV  Y + G    A  V    +  + + W
Sbjct: 541 ANSGSLEWARE-IHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISW 599

Query: 362 RTLLGSCKIH 371
             ++G    H
Sbjct: 600 NAIIGGSAQH 609



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 204/437 (46%), Gaps = 16/437 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           +LN YA     S+  A+ +F++++     +W   I  +A       A   +  M    + 
Sbjct: 167 ILNMYA--KCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVV 224

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+  T+   L A     AL   + +H  ++ +G+E    V T L++ YA  G  +  R 
Sbjct: 225 -PNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQ 283

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF+ +  RDL++WN++I    +  +  EA ++Y +M+ E V  +  T V LL++C +  A
Sbjct: 284 VFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAA 343

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L+ G  +H    + GF   + V NAL+ MY++CG++  A  VF +M ++DV+SW +MI G
Sbjct: 344 LHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGG 403

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
               G G EA++ +++M  AG  P+ +T+  +L  CS    +E G    H  V    L  
Sbjct: 404 LAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWG-RRIHQQVVEAGLAT 462

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--N 383
                  LV++Y   G ++ A +V +     D V +  ++G    H    +G+ A+K  +
Sbjct: 463 DAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAH---NLGKEALKLFD 519

Query: 384 LVQLEAASAGDYVLLATIYACTKDE--EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
            +Q E         +  + AC      E       L++  G      +S   +GN +   
Sbjct: 520 RLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGF-----FSDTSVGNALVST 574

Query: 442 VVDDKSHPDADMIYRKL 458
                S  DA +++ K+
Sbjct: 575 YAKCGSFSDASIVFEKM 591



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 148/312 (47%), Gaps = 2/312 (0%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WN+++  + Q     +A+     M    L+ PD  T    L +C+   AL   +E+H  
Sbjct: 93  SWNAMVVGYIQYGYIEKALKLLRQMQQHGLA-PDRTTIMSFLSSCKSPGALEWGREIHFQ 151

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
            +++G    V V+  ++  YA  G IE AR VFD M ++ +VSW   I  Y        A
Sbjct: 152 AMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETA 211

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
            +++++M  E V  +  T + +L++ +   AL  G  +H      G      VG ALV M
Sbjct: 212 FEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKM 271

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAKCG+      VF ++  RD+++WN+MI G    G  +EA   + QM   G  P+ IT+
Sbjct: 272 YAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITY 331

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           + LL  C +   +  G E  H  V++      I     L+ +Y R G ++ A  V +   
Sbjct: 332 VILLNACVNSAALHWGKE-IHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMV 390

Query: 355 PSDPVLWRTLLG 366
             D + W  ++G
Sbjct: 391 RKDVISWTAMIG 402



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 133/273 (48%), Gaps = 3/273 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ER 153
           LK C  VK L   +++H  +I+            L+  Y   G IE AR V+  +   ER
Sbjct: 30  LKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMER 89

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
            + SWN+++  Y Q  +  +ALKL  +M+   +  D  T++  LSSC   GAL  G  +H
Sbjct: 90  TVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIH 149

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
             A + G +  V V N +++MYAKCG+++ A  VF +M K+ V+SW   I GY   GR +
Sbjct: 150 FQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSE 209

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
            A   F++M   G  P+ IT++ +L   S    ++ G +  H  +     +        L
Sbjct: 210 TAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG-KAVHSRILNAGHESDTAVGTAL 268

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           V +Y + G  +   +V       D + W T++G
Sbjct: 269 VKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 301



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 3/173 (1%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR--K 253
           +L  C  V  L  G  +H+   +   V   Y  NAL++MY +CG+++ A  V+ ++   +
Sbjct: 29  MLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYME 88

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           R V SWN+M+VGY  +G  ++A+   +QM   G  PD  T +  L  C   G +E G E 
Sbjct: 89  RTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGRE- 147

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            H    +  L   +K   C++++Y + G +E+A EV +       V W   +G
Sbjct: 148 IHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIG 200


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/545 (39%), Positives = 324/545 (59%), Gaps = 32/545 (5%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMASLSRPDTFTFTF 94
           S ++YA  +F+ I+N  +  WN+LIRA A  +S   +A   Y  ML    S PD  TF F
Sbjct: 154 SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPF 213

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            LKAC  +   ++ +++H  +++ G+   V V+  L+  Y + G ++ AR VFD MPER 
Sbjct: 214 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 273

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMR--FEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           LVSWNS+I    +   +  AL+L+  M+  FE    DG+T+  +LS+CA +G+L++G + 
Sbjct: 274 LVSWNSMIDALVRFGEYDSALQLFREMQRSFEP---DGYTMQSVLSACAGLGSLSLGTWA 330

Query: 213 HRI---ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
           H      C++     V V N+L++MY KCG+L  A  VF  M+KRD+ SWN+MI+G+  H
Sbjct: 331 HAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATH 390

Query: 270 GRGDEAISFFKQML--MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           GR +EA++FF +M+       P+S+TF+GLL  C+H+G V +G +YF MMV  Y ++P +
Sbjct: 391 GRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPAL 450

Query: 328 KHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSC-KIHRNVEIGEIAMKNLV 385
           +HYGC+VDL  RAG + +A++ V++     D V+WR+LL +C K   +VE+ E   +N++
Sbjct: 451 EHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNII 510

Query: 386 QLEAAS-------AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
             +  +       +G YVLL+ +YA       V   RKL+  +GI+  PG S IEI    
Sbjct: 511 GTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGIS 570

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           H+F   D SHP    IY++L+ I  R + IGY  D S   +  ++++   E S   HSE+
Sbjct: 571 HEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSER 630

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LAIAFGL   P  T +RI KNLR            S  ++ ++IVRDRVR+HHF+DG CS
Sbjct: 631 LAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCS 690

Query: 547 CGDYW 551
           C DYW
Sbjct: 691 CLDYW 695


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/531 (39%), Positives = 315/531 (59%), Gaps = 30/531 (5%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS--PLQAIFYYNHMLMASLSRPDTFTFTFT 95
           L  A+ LF+++      +W ++I A++  L+   L+ +     ++     RP+ FT++  
Sbjct: 106 LEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLI----LMFREGVRPNMFTYSSV 161

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+AC+    L   ++LH  +I++G E  V V + L+  Y+    ++ A  VFD MP RDL
Sbjct: 162 LRACD---GLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDL 218

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           V WNSII  + Q S   EAL L++RM+      D  TL  +L +C  +  L +G  +H  
Sbjct: 219 VVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVH-- 276

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
              + F + + + NAL+DMY KCG+L+ A   FSRM ++DV+SW++M+ G   +G   +A
Sbjct: 277 VHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQA 336

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F+ M  +G  P+ IT LG+L  CSH GLVE+G  YF  M   + + PG +HYGCL+D
Sbjct: 337 LELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLID 396

Query: 336 LYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           L GRAG+L++A+++I+      D V WRTLLG+C++HRNV++   A K +++LE   AG 
Sbjct: 397 LLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGT 456

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           Y+LL+ IYA T+  E VA  RK + + GI+ TPG SWIE+  Q+H F++ D SHP  + I
Sbjct: 457 YILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEI 516

Query: 455 YRKLEEIMHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            ++L +++ R   +GY  D + V   + G   ED L     YHSEKLAI FGL       
Sbjct: 517 VQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLR----YHSEKLAIMFGLMNLSREK 572

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++RI KNLR            S    R +++RD +RYHHF+DG+CSCGDYW
Sbjct: 573 TVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 168/323 (52%), Gaps = 18/323 (5%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D  T++  +K C    A+ + + +H  +   GYE  + V   L+  Y    ++E A  +F
Sbjct: 54  DAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLF 113

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D MPER++VSW ++IS Y+    + +ALK    M  E V  + FT   +L +C  +  L 
Sbjct: 114 DEMPERNVVSWTTMISAYSN-KLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLR 172

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
               LH    + G    V+V +AL+D+Y+K  +LD+A  VF  M  RD++ WNS+I G+ 
Sbjct: 173 Q---LHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFA 229

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +  G+EA++ FK+M  AGF  D  T   +L  C+   L+E G +  H+ V +++    +
Sbjct: 230 QNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQ-VHVHVLKFDQDLIL 288

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH----RNVEIGEIAMKN 383
            +   L+D+Y + G LE A    +     D + W T++     +    + +E+ E +MK 
Sbjct: 289 NN--ALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFE-SMK- 344

Query: 384 LVQLEAASAGDYV-LLATIYACT 405
               E+ S  +Y+ +L  ++AC+
Sbjct: 345 ----ESGSRPNYITVLGVLFACS 363



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 120/273 (43%), Gaps = 34/273 (12%)

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR-IACEMGFVESVYVGNALV 232
           A++  + M    V  D  T   L+  C+  GA+  G  +H  I C+ G+   ++V N L+
Sbjct: 39  AMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCK-GYEPKMFVVNTLL 97

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           +MY K   L+ A  +F  M +R+V+SW +MI  Y  +   D+A+     M   G  P+  
Sbjct: 98  NMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMF 156

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           T+  +L  C   GL    +   H  + +  L+  +     L+D+Y +   L+ AL V + 
Sbjct: 157 TYSSVLRACD--GL--PNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDE 212

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACTKDEEG 410
               D V+W +++G    + +   G  A+    +++ A   A    L + + ACT     
Sbjct: 213 MPTRDLVVWNSIIGGFAQNSD---GNEALNLFKRMKRAGFLADQATLTSVLRACT----- 264

Query: 411 VARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
                            G + +E+G QVH  V+
Sbjct: 265 -----------------GLALLELGRQVHVHVL 280


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/513 (39%), Positives = 312/513 (60%), Gaps = 22/513 (4%)

Query: 56  WNSLIRAFAQS-LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           ++++IRA+A+S  S   AIFYYN ML   +S P+ + F F LKAC  ++ LN  + +HG 
Sbjct: 76  FSTIIRAYAESSQSKHNAIFYYNLMLGYGIS-PNKYAFPFVLKACAGLRDLNLGKAVHGS 134

Query: 115 VIRSGYERCVVVSTNLMRGYAA-NGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
           +++ G++  + V   ++  Y   +G +E AR +FD MP+ D V+W ++I  Y +      
Sbjct: 135 LVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAG 194

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           A+ L+ +M+   V  D  T+V +LS+C  +GAL +G ++     +   +++V + NALVD
Sbjct: 195 AVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVD 254

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           M+AKCG++D A  +F  M KR ++SW S+IVG  +HGRG EA+S F++M  +G  P+ I 
Sbjct: 255 MFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIA 314

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F+GLL  CSH GLVE G +YF  M  ++ + P I+HYGC+VDL  RAG + +ALE +   
Sbjct: 315 FIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERM 374

Query: 354 S-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
               +P++WRTL+ +C++H  +++GE   K L++ E     +YVLL+ IY    D E  +
Sbjct: 375 PIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKS 434

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY-- 470
           + R  +   GI+  PG + IE+ N++H+F+V D+SH   + I + + E+    K  GY  
Sbjct: 435 KIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAP 494

Query: 471 TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
           T  E  + +     ED L +    HSEKLAIAF L  TP G+ +RI KNLR         
Sbjct: 495 TTTEVFLDIDEEDKEDALSR----HSEKLAIAFALLNTPPGSPIRITKNLRVCGDCHSAS 550

Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              S  Y+R++++RDR R+HHFRDG CSCGD+W
Sbjct: 551 KFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/527 (38%), Positives = 318/527 (60%), Gaps = 18/527 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +   +++    +WNSL+  F +     +A+  + +M   ++ + D +TF   L 
Sbjct: 316 LKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNM-KIDDYTFPSVLN 374

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C  V ++N  + +HG +I++G+E   +VS  L+  YA  G ++ A +VF+ M E+D++S
Sbjct: 375 CC-VVGSINP-KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVIS 432

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W S+++ Y Q + H E+LK++  MR   V  D F +  +LS+CA +  L  G  +H    
Sbjct: 433 WTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFI 492

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G   S  V N+LV MYAKCG LD A  +F  M+ +DV++W ++IVGY  +G+G  ++ 
Sbjct: 493 KSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLK 552

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
           F+  M+ +G  PD ITF+GLL  CSH GLV+EG +YF  M   Y +KPG +HY C++DL+
Sbjct: 553 FYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLF 612

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GR+GKL++A ++++      D  +W++LL +C++H N+E+ E A  NL +LE  +A  YV
Sbjct: 613 GRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYV 672

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           +L+ +Y+ ++    VA+ RKL+KS GI   PG SW+EI ++V+ F+ DD+ HP    IY 
Sbjct: 673 MLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYT 732

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
           K++EI+ R K  GY  D S         ++  E   AYHSEKLA+AFGL   P    +RI
Sbjct: 733 KIDEIILRIKEAGYVPDMSFSL--HDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRI 790

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            KNLR            S  ++R +I+RD   +HHFR+G CSCGDYW
Sbjct: 791 FKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 144/286 (50%), Gaps = 13/286 (4%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +   FT    L+ C  +  +   + +HGFV+++G+E  V V T L+  YA    +  A  
Sbjct: 159 KASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEF 218

Query: 146 VFDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           +F  +    ++ V W ++++ Y Q     +A++ +  M  + V  + +T   +L++C+ V
Sbjct: 219 LFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSV 278

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
            A   G  +H    + GF  +VYV +ALVDMYAKCG+L +A  +   M   DV+SWNS++
Sbjct: 279 LARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLM 338

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
           VG+  HG  +EA+  FK M       D  TF  +L  C    +  + V   H ++    +
Sbjct: 339 VGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSV---HGLI----I 391

Query: 324 KPGIKHY----GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           K G ++Y      LVD+Y + G ++ A  V       D + W +L+
Sbjct: 392 KTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLV 437



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 119/273 (43%), Gaps = 36/273 (13%)

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA------------------ 168
           +  L+   + +G +  AR +FD MP++D  SWN++IS Y                     
Sbjct: 68  TNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSS 127

Query: 169 -------------SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
                           +EA  L+  MR E      FTL  +L  C+ +G +  G  +H  
Sbjct: 128 ITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGF 187

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM---RKRDVLSWNSMIVGYGVHGRG 272
             + GF  +V+V   LVDMYAKC  +  A  +F  +   RK  VL W +M+ GY  +G G
Sbjct: 188 VVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVL-WTAMVTGYAQNGDG 246

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            +A+ FF+ M   G   +  TF  +L  CS   L     E  H  + +      +     
Sbjct: 247 YKAVEFFRYMHAQGVECNQYTFPTILTACSSV-LARCFGEQVHGFIVKSGFGSNVYVQSA 305

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           LVD+Y + G L+ A  ++ T    D V W +L+
Sbjct: 306 LVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLM 338



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 32/155 (20%)

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI------------------- 263
           ES+Y  N L++  +K G ++ A  +F +M ++D  SWN+MI                   
Sbjct: 63  ESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGC 122

Query: 264 ------------VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
                        GY   G   EA   F+ M + G+     T   +L  CS  GL++ G 
Sbjct: 123 SCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTG- 181

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
           E  H  V +   +  +     LVD+Y +   + +A
Sbjct: 182 EMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEA 216


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/539 (41%), Positives = 308/539 (57%), Gaps = 19/539 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y   V  SLS A+LLF++I       WN LIR +A +     A+  Y  M    L 
Sbjct: 116 LVNLYC--VCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLV 173

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD FTF F LKAC  + A+   +E+H  V+++G+E+ V V   L+  YA  G + +AR 
Sbjct: 174 -PDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSARE 232

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD +  RD V WNS+++ Y+Q       L L   M    +     TLV  +S+ A   A
Sbjct: 233 VFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAA 292

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  LH ++    F     V  ALVDMYAKCG++  A  +F R+  + V+SWN+MI G
Sbjct: 293 LPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITG 352

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y +HG   EA+  F++M      PD ITF+G+L  CSH GL+EEG  +F  M+  Y + P
Sbjct: 353 YAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDP 411

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            ++HY C+VDL G +G+L++A  +I       D  +W  LL SCKIH NVE+GEIA++ L
Sbjct: 412 TVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERL 471

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           ++LE   AG+YV+L+ IYA     EGVA+ RKL+    +K +   SWIE+ N+VH F+  
Sbjct: 472 IELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSG 531

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D SHP +D IY +LE +    K  GY+   S  +V     +D        HSE+LAIAFG
Sbjct: 532 DTSHPLSDEIYSELERVGGLMKEAGYSP--STGSVFHDVEDDEKANMVCSHSERLAIAFG 589

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L +TP GT L I KNLR            S    R++ VRD  RYHHF+DG+CSCGDYW
Sbjct: 590 LISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 159/328 (48%), Gaps = 7/328 (2%)

Query: 47  QIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT-FTFTLKACERVKAL 105
           Q Q+P   ++ S    F  + + L+AI   ++    S     T++ +   L++C   KA+
Sbjct: 33  QYQSPNP-SFTSSAPQFDNNQTHLKAIPSCSNPHAESTCLTPTYSNYASLLQSCIARKAI 91

Query: 106 NKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCY 165
              ++LH  V  +G+    V++T L+  Y     + +AR +FD +P+ ++  WN +I  Y
Sbjct: 92  KPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGY 151

Query: 166 TQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
                +  A++LY +M   D GL  D FT   +L +CA + A+  G  +H    + G+ +
Sbjct: 152 AWNGPYEAAVQLYYQMF--DYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEK 209

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            V+VG AL+DMYAKCG + SA  VF ++  RD + WNSM+  Y  +G  D  +S   +M+
Sbjct: 210 DVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMV 269

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
           + G  P   T +  +   +    + +G E  H +  R   +   K    LVD+Y + G +
Sbjct: 270 LTGLRPTEATLVTAISASADNAALPQGRE-LHGLSWRQEFESHDKVKTALVDMYAKCGSV 328

Query: 344 EKALEVINTSSPSDPVLWRTLLGSCKIH 371
             A  +         V W  ++    +H
Sbjct: 329 RVARNLFERLGVKRVVSWNAMITGYAMH 356


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/513 (40%), Positives = 311/513 (60%), Gaps = 22/513 (4%)

Query: 56  WNSLIRAFAQS-LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +N+LIRA+AQ+  S  +A+  Y  ML  ++  P+ FT+ F LKAC  ++ LN  Q +HG 
Sbjct: 99  FNTLIRAYAQTGHSKDKALALYGIMLHDAI-LPNKFTYPFVLKACAGLEVLNLGQTVHGS 157

Query: 115 VIRSGYERCVVVSTNLMRGYAA-NGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
           V++ G++  + V   ++  Y+   G I +AR VFD MP+ D V+W+++I  Y +     E
Sbjct: 158 VVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTE 217

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           A+ L+  M+  +V  D  T+V +LS+C  +GAL +G ++          + V V NAL+D
Sbjct: 218 AVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALID 277

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           M+AKCG++  A  +F  M ++ ++SW S+IVG  +HGRG EA   F++M  +G  PD + 
Sbjct: 278 MFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVA 337

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NT 352
           F+GLL  CSH GLVE G EYF  M+ +Y L P I+HYGC+VD+Y R G +++ALE + N 
Sbjct: 338 FIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNM 397

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
               +PV+ RTL+ +C+ H   ++GE   K L++ E     +YVLL+ IYA T   E   
Sbjct: 398 PIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKT 457

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY-- 470
           + R++++  G+K  PG + IEI N++++FV  DKSH     IY  ++E+    K  GY  
Sbjct: 458 KIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRP 517

Query: 471 TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
           +  E L+ ++    ED L +    HSEKLAIAFGL  TP GT +RIVKNLR         
Sbjct: 518 STSEVLLDINEEDKEDSLNR----HSEKLAIAFGLLRTPPGTPIRIVKNLRVCSDCHSAS 573

Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              S  Y R++I+RDR R+HHF+ G CSCGD+W
Sbjct: 574 KFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/541 (39%), Positives = 307/541 (56%), Gaps = 18/541 (3%)

Query: 26   LLNSYAISVSS--SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS 83
            +L  +AI   S   +  A ++F  I NP +  WN +IR FA     L ++  Y+ M+   
Sbjct: 754  ILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKG 813

Query: 84   LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
            L +PD F F F LK+C  +  L + + +H  ++  G    + V   L+  YA  G IEAA
Sbjct: 814  L-KPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAA 872

Query: 144  RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
            R VFD M  RDLVSW S+IS Y    ++ E L  ++ MR   V  +  +++ +L +C ++
Sbjct: 873  RLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNL 932

Query: 204  GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
            GAL  G + H    + GF   + V  A++DMY+KCG+LD A C+F     +D++ W++MI
Sbjct: 933  GALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMI 992

Query: 264  VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
              YG+HG G +AI  F QM+ AG  P  +TF  +L  CSH GL+EEG  YF +M   + +
Sbjct: 993  ASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVI 1052

Query: 324  KPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
               + +Y C+VDL GRAG+L +A+++I N     D  +W +LLG+C+IH N+++ E    
Sbjct: 1053 ARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIAD 1112

Query: 383  NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            +L  L+   AG +VLL+ IYA       V + RK++   G     G+S +E  NQVHKF 
Sbjct: 1113 HLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFG 1172

Query: 443  VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
            V D+SHP  + +Y KLEE+    K +GY      V       E+  E + +YHSE+LAIA
Sbjct: 1173 VGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVL--HDIEEEAKEAALSYHSERLAIA 1230

Query: 503  FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
            FGL  T  GT+LRI KNLR            S   +R ++VRD  R+H F DG+CSCGDY
Sbjct: 1231 FGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDY 1290

Query: 551  W 551
            W
Sbjct: 1291 W 1291



 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/448 (35%), Positives = 259/448 (57%), Gaps = 8/448 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LLN YA +    +  A  LF+++      +W+++I  +A + +  +A+  ++ M+     
Sbjct: 247 LLNLYAKTGCEKI--AANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRF- 303

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P++ T    L+AC   + L + +++H   +  G+E    VST L+  Y      + A  
Sbjct: 304 EPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVD 363

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F  +P++D+VSW +++S Y Q     +++ ++  M  + +  D   +V +L++ + +G 
Sbjct: 364 LFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGI 423

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
               + LH      GF  +V+VG +L+++Y+KCG+L  A  +F  M  RDV+ W+SMI  
Sbjct: 424 FQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAA 483

Query: 266 YGVHGRGDEAISFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           YG+HGRG EA+  F QM+  +   P+++TFL +L  CSH GLVEEG++ F  MV  Y L+
Sbjct: 484 YGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLR 543

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
           P  +H+G +VDL GR G+L KA+++IN    P+ P +W  LLG+C+IH N+E+GE A KN
Sbjct: 544 PDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKN 603

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           L  L+ + AG Y+LL+ IYA     + VA  R  IK  G+K   G S +E+   VH F+ 
Sbjct: 604 LFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLA 663

Query: 444 DDKSHPDADMIY---RKLEEIMHRAKFI 468
            D+ HPD+  IY   RKLE  M +  +I
Sbjct: 664 SDRFHPDSQKIYELLRKLEAQMGKEVYI 691



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 200/407 (49%), Gaps = 15/407 (3%)

Query: 15  ARQAHEIHGEWLLNSYAISVSS---SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ 71
           A++  EI  +  + S  + + S    +  A  +F + Q P T  W S++  + Q+  P +
Sbjct: 129 AKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEE 188

Query: 72  AIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131
           A+  ++ M+M      D  T    + AC ++  +     +HG VIR  ++  + +  +L+
Sbjct: 189 ALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLL 248

Query: 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM---RFEDVGL 188
             YA  G  + A ++F  MPE+D++SW+++I+CY       EAL L+  M   RFE    
Sbjct: 249 NLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEP--- 305

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
           +  T+V  L +CA    L  G  +H+IA   GF     V  AL+DMY KC   D A  +F
Sbjct: 306 NSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLF 365

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
            R+ K+DV+SW +++ GY  +G   +++  F+ ML  G  PD++  + +L   S  G+ +
Sbjct: 366 QRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQ 425

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
           + +   H  V R      +     L++LY + G L  A+++       D V+W +++ + 
Sbjct: 426 QAL-CLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAY 484

Query: 369 KIH-RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGV 411
            IH R  E  EI    +V+       +   L+ + AC+     EEG+
Sbjct: 485 GIHGRGGEALEI-FDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGL 530



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 169/332 (50%), Gaps = 3/332 (0%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           +SL  A+ +F++  +P    WNS +R++ +     + +  ++ M+  +   PD FT    
Sbjct: 50  ASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIA 109

Query: 96  LKACERVKALNKCQELHGFVIRSG-YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           LKAC  ++ L   + +HGF  ++      + V + L+  Y+  G +  A  VF+     D
Sbjct: 110 LKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPD 169

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLH 213
            V W S+++ Y Q +   EAL L+ +M   D V LD  TLV ++S+CA +  +  G  +H
Sbjct: 170 TVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVH 229

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            +     F   + + N+L+++YAK G    A  +FS+M ++DV+SW++MI  Y  +   +
Sbjct: 230 GLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAAN 289

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           EA++ F +M+   F P+S+T +  L  C+    +EEG +  H +      +        L
Sbjct: 290 EALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEG-KKIHKIAVWKGFELDFSVSTAL 348

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +D+Y +    ++A+++       D V W  LL
Sbjct: 349 IDMYMKCSCPDEAVDLFQRLPKKDVVSWVALL 380



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 133/263 (50%), Gaps = 1/263 (0%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           ++ H  +   G +    + T     Y +   I+AA  VF+++P      WN +I  +   
Sbjct: 737 KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
              L +L+LY +M  + +  D F     L SCA +  L  G  +H+     G    ++V 
Sbjct: 797 GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
            ALVDMYAKCG++++A  VF +M  RD++SW SMI GY  +G   E + FF  M  +G  
Sbjct: 857 AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           P+ ++ L +L  C + G + +G E+FH  V +   +  I     ++D+Y + G L+ A  
Sbjct: 917 PNRVSILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARC 975

Query: 349 VINTSSPSDPVLWRTLLGSCKIH 371
           + + ++  D V W  ++ S  IH
Sbjct: 976 LFDETAGKDLVCWSAMIASYGIH 998



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 133/274 (48%), Gaps = 7/274 (2%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
            +AC   ++++   +LH  V ++G       +T L   YA    ++AAR VFD  P  ++
Sbjct: 11  FQACNNGRSVS---QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNV 67

Query: 156 VSWNSIISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
             WNS +  Y +     E L+L+  M        D FT+   L +CA +  L +G  +H 
Sbjct: 68  HLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHG 127

Query: 215 IACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            A +   + S ++VG+ALV++Y+KCG +  A  VF   ++ D + W SM+ GY  +   +
Sbjct: 128 FAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPE 187

Query: 274 EAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           EA++ F QM+M      D +T + ++  C+    V+ G    H +V R      +     
Sbjct: 188 EALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAG-SCVHGLVIRREFDGDLPLVNS 246

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           L++LY + G  + A  + +     D + W T++ 
Sbjct: 247 LLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIA 280


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/553 (39%), Positives = 318/553 (57%), Gaps = 25/553 (4%)

Query: 17  QAHEIHGEWLLNSYAISVSSSLSYA-QLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFY 75
            +H +  + LL   A   +  L YA  +L   + +P   + N+++R FA S  P  A+  
Sbjct: 53  PSHPLLAKHLLFHLAALKAPPLRYAVAVLSGLLPSPDPFSLNTVLRIFASSARPRVALAL 112

Query: 76  YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
           +       L+ PDT T+   L+AC R+ AL   + LH    ++G    V V  +L+  Y 
Sbjct: 113 HRR----HLAPPDTHTYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYG 168

Query: 136 ANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           A G+ E+A  VFD +P  ER+LVSWNS+++ +       E L ++  M   +   DGFT+
Sbjct: 169 ACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTV 228

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR- 252
           V +L++CA +G L +G  +H    ++G V + + GNAL+D+YAKCG +D A  +F  M  
Sbjct: 229 VSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGV 288

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
            R V+SW S+IVG  V+G G +A+  F  M      P  IT +G+L  CSH GLV++G  
Sbjct: 289 GRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFR 348

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKI 370
           YF  M + Y + P I+H GC+VDL GRAG++E+A   I T+ P +P  V+WRTLLG+C +
Sbjct: 349 YFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYI-TTMPLEPNAVVWRTLLGACAM 407

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS 430
           H+ +EIGE A   LV+L+   +GDYVLL+ +YA       V   RK + ++G++  PG S
Sbjct: 408 HKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHS 467

Query: 431 WIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEK 490
            +E+ N V++FV+ D+SHP+ D IY  L +I  R +  GY    S V       E   E 
Sbjct: 468 LVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEK--ES 525

Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYH 538
           +  YHSE+LAIAF L  +  GT +RIVKNLR            S  Y R++IVRDR R+H
Sbjct: 526 ALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFH 585

Query: 539 HFRDGLCSCGDYW 551
           HF+ G CSC DYW
Sbjct: 586 HFKGGACSCKDYW 598


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/530 (39%), Positives = 315/530 (59%), Gaps = 17/530 (3%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           SS+SYA+ LF  +  P    +NS+ R +++  +PL+    +  +L   +  PD +TF   
Sbjct: 77  SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGI-LPDNYTFPSL 135

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LKAC   KAL + ++LH   ++ G +  V V   L+  Y     +++AR VFD + E  +
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCV 195

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           V +N++I+ Y + +   EAL L+  M+ + +  +  TL+ +LSSCA +G+L++G ++H+ 
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKY 255

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A +  F + V V  AL+DM+AKCG+LD A  +F +MR +D  +W++MIV Y  HG+ +++
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKS 315

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F++M      PD ITFLGLL  CSH G VEEG +YF  MVS++ + P IKHYG +VD
Sbjct: 316 MLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVD 375

Query: 336 LYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L   AG LE A E I+    SP+ P+LWR LL +C  H N+++ E   + + +L+ +  G
Sbjct: 376 LLSXAGNLEDAYEFIDKLPISPT-PMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGG 434

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
           DYV+L+ +YA  K  E V   RK++K       PG S IE+ N VH+F   D        
Sbjct: 435 DYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTK 494

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           ++R L+E++   K  GY  D S+V V  + ++   E +  YHSEKLAI FGL  TP GT+
Sbjct: 495 LHRALDEMVKELKLSGYVPDTSMV-VHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTT 553

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R+VKNLR            S+ + R ++ RD  R+HHF DG CSCGD+W
Sbjct: 554 IRVVKNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/562 (38%), Positives = 329/562 (58%), Gaps = 55/562 (9%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           Y +L+F Q++ P    W +LIR +A     ++++  YN M    +  P +FTFT  LKAC
Sbjct: 91  YPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIG-PVSFTFTALLKAC 149

Query: 100 ERVKALNKCQELHGFVIRSG---------------YERC-----------------VVVS 127
                +N  +++H   I  G               Y +C                 V+  
Sbjct: 150 SAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISW 209

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           T+L+  YA  G +EAA  +FD +P +D+V+W ++++ Y Q +   EAL+++ERM+   V 
Sbjct: 210 TSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVK 269

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF--VESVYVGNALVDMYAKCGNLDSAF 245
            D  TLV ++S+CA +GA     ++  +A + GF    +V VG+AL+DMYAKCG+++ A+
Sbjct: 270 TDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAY 329

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF RM +R+V S++SMIVG+ +HG    A+  F +ML     P+ +TF+G+L  CSH G
Sbjct: 330 KVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAG 389

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRT 363
           +VE+G + F MM   + + P   HY C+VDL GRAG+LE+AL ++    P +P   +W  
Sbjct: 390 MVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKM-MPMNPHGGVWGA 448

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LLG+C+IH N ++ +IA  +L +LE    G+Y+LL+ IYA     + V++ RKL+++ G+
Sbjct: 449 LLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGL 508

Query: 424 KTTPGWSWIEIGNQ--VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
           K  PG SW+E G +  +H+F   D SHP +  I + LE+++ R K++GY  + S VA   
Sbjct: 509 KKNPGCSWVE-GKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDI 567

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
           S  E   ++    HSEKLA+AFGL TT  G ++RIVKNLR            S    R++
Sbjct: 568 SDEEK--KRLLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREI 625

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           +VRD +R+HHFRDG CSCG++W
Sbjct: 626 VVRDNMRFHHFRDGRCSCGNFW 647



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 123/281 (43%), Gaps = 37/281 (13%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI--EAARSVFDNMPERDLVSWNSII 162
           +N+ +++H  + R G E+C  V   L+R      V      R VF  +   +   W ++I
Sbjct: 52  INQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALI 111

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG-F 221
             Y      +E++ LY  MR + +G   FT   LL +C+    +N+G  +H     +G F
Sbjct: 112 RGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGF 171

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV----------------- 264
              +YVGN L+DMY KCG L     VF  M  RDV+SW S+IV                 
Sbjct: 172 GSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDG 231

Query: 265 --------------GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
                         GY  + R  EA+  F++M  AG   D +T +G++  C+  G  +  
Sbjct: 232 LPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYA 291

Query: 311 VEYFHMMVSRYNLKP--GIKHYGCLVDLYGRAGKLEKALEV 349
             +   +  +    P   +     L+D+Y + G +E A +V
Sbjct: 292 -NWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKV 331



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 5/243 (2%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++  A  LF+ +      AW +++  +AQ+  P +A+  +  M  A + + D  T    +
Sbjct: 221 NMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGV-KTDEVTLVGVI 279

Query: 97  KACERVKALNKCQELHGFVIRSGYERC--VVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            AC ++ A      +     +SG+     VVV + L+  YA  G +E A  VF+ M ER+
Sbjct: 280 SACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERN 339

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           + S++S+I  +        A++L++ M   ++  +  T + +L++C+H G +  G  L  
Sbjct: 340 VYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFA 399

Query: 215 IACEM-GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSMIVGYGVHGRG 272
           +  E  G   S      +VD+  + G L+ A  +   M        W +++    +HG  
Sbjct: 400 MMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNP 459

Query: 273 DEA 275
           D A
Sbjct: 460 DMA 462


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/544 (39%), Positives = 309/544 (56%), Gaps = 19/544 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+ S A+S   S+ YA  +F QI+ P +  +N++IR    S+   +A+  Y  ML  
Sbjct: 66  GSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLER 125

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +  PD FT+ F LKAC  + AL +  ++H  V  +G E  V V   L+  Y   G IE 
Sbjct: 126 GI-EPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEH 184

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG-LDGFTLVCLLSSCA 201
           A  VF+ M E+ + SW+SII  +       E L L   M  E     +   LV  LS+C 
Sbjct: 185 AGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACT 244

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
           H+G+ N+G  +H I        +V V  +L+DMY KCG+L+   CVF  M  ++  S+  
Sbjct: 245 HLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTV 304

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI G  +HGRG EA+  F  ML  G  PD + ++G+L  CSH GLV+EG + F+ M   +
Sbjct: 305 MIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEH 364

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEI 379
            +KP I+HYGC+VDL GRAG L++A ++I  S P  P  V+WR+LL +CK+H N+EIGEI
Sbjct: 365 MIKPTIQHYGCMVDLMGRAGMLKEAYDLIK-SMPIKPNDVVWRSLLSACKVHHNLEIGEI 423

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
           A  N+ +L   + GDY++LA +YA  +    VAR R  +    +  TPG+S +E    V+
Sbjct: 424 AADNIFKLNKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVY 483

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
           KFV  DKS P  + IY  ++++  + KF GYT D S V +     ED   +   +HS+KL
Sbjct: 484 KFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLL--DVDEDEKRQRLKHHSQKL 541

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           AIAF L  T +G+ +RI +NLR            S+ Y R++ VRD  R+HHF+DG CSC
Sbjct: 542 AIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSC 601

Query: 548 GDYW 551
            DYW
Sbjct: 602 KDYW 605


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/541 (39%), Positives = 315/541 (58%), Gaps = 21/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA     +L  AQ +F Q+      +WNS+I A+ Q+  P+ A  ++  M +  L 
Sbjct: 314 LINMYA--KFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGL- 370

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAAR 144
            PD  T         + +     + +HGF++R G+    VV+   +M  YA  GVI++A 
Sbjct: 371 EPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAH 430

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHV 203
            VF+ +P +D+VSWN++IS YTQ     EA+++Y  M    ++ L+  T V +L++ AHV
Sbjct: 431 KVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHV 490

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           GAL  G+ +H    +      V+VG  L+D+Y KCG L  A C+F ++ +   + WN++I
Sbjct: 491 GALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAII 550

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
             +G+HG G++A+  F++M   G  PD +TF+ LL  CSH GLV+EG  +FH+M   Y +
Sbjct: 551 SCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLM-QEYGI 609

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           KP +KHYGC+VDL GRAG LE A + I +     D  +W  LLG+C+IH N+E+G+ A  
Sbjct: 610 KPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASD 669

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            L ++++ + G YVLL+ IYA     EGV + R L +  G+K TPGWS IE+  +V  F 
Sbjct: 670 RLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFY 729

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             ++SHP    IY +L  +  + K +GY  D S V       ED  E     HSE+LAIA
Sbjct: 730 TGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVL--QDVEEDEKEHILTSHSERLAIA 787

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FG+ +TP  +++RI KNLR            S    R+++VRD  R+HHF++G+CSCGDY
Sbjct: 788 FGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDY 847

Query: 551 W 551
           W
Sbjct: 848 W 848



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 177/340 (52%), Gaps = 5/340 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA     SLS     F+QIQ      WNS+I A+ ++    +AI  +  +L+ +  
Sbjct: 114 LVNLYASLGDVSLSRGT--FDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKF 171

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           + D +TF   LKAC+    L   +++H +V + G++  V V+ +L+  Y+  G +  ARS
Sbjct: 172 QADFYTFPPVLKACQ---TLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARS 228

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD+MP RD+ SWN++IS   Q     +AL + + MR E + +D  T+  +L  CA +G 
Sbjct: 229 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGD 288

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           ++    +H    + G    ++V NAL++MYAK GNL  A  VF +M  RDV+SWNS+I  
Sbjct: 289 ISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAA 348

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y  +     A  FF +M + G  PD +T + L    +     +        ++ R  L  
Sbjct: 349 YEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLME 408

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +     ++D+Y + G ++ A +V N     D V W TL+
Sbjct: 409 AVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLI 448



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 127/260 (48%), Gaps = 5/260 (1%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           + LH  ++ SG  +   +S  L+  YA+ G +  +R  FD +  +D+ +WNS+IS Y + 
Sbjct: 93  KRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRN 152

Query: 169 SFHLEALK-LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227
               EA+   Y+ +       D +T   +L +C     L  G  +H    ++GF   V+V
Sbjct: 153 GHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQ---TLVDGRKIHCWVFKLGFQWDVFV 209

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
             +L+ MY++ G +  A  +F  M  RD+ SWN+MI G   +G   +A+    +M + G 
Sbjct: 210 AASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 269

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
           + DS+T   +L  C+  G +       H+ V ++ L+  +     L+++Y + G L  A 
Sbjct: 270 NMDSVTVASILPVCAQLGDISTAT-LIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQ 328

Query: 348 EVINTSSPSDPVLWRTLLGS 367
           +V       D V W +++ +
Sbjct: 329 KVFQQMFLRDVVSWNSIIAA 348


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/564 (37%), Positives = 320/564 (56%), Gaps = 49/564 (8%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S+S  +S A+ +F++        WN +I  + +S    +++  ++ M    +  P + T 
Sbjct: 165 SLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRV-LPSSITL 223

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM-- 150
              L AC ++K LN  + +H +V     E   V+   L+  YAA G ++ A  +FDNM  
Sbjct: 224 VSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKS 283

Query: 151 -----------------------------PERDLVSWNSIISCYTQASFHLEALKLYERM 181
                                        PERD VSW ++I  Y Q +   E L L+  M
Sbjct: 284 RDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREM 343

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           +  ++  D FT+V +L++CAH+GAL +G ++     +       +VGNAL+DMY  CGN+
Sbjct: 344 QAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNV 403

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           + A  +F+ M  RD +SW ++I G  ++G G+EA+  F QML A   PD +T +G+LC C
Sbjct: 404 EKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCAC 463

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVL 360
           +H G+V++G ++F  M +++ ++P + HYGC+VDL GRAG L++A EVI N     + ++
Sbjct: 464 THSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIV 523

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           W +LLG+C++HR+ E+ E+A + +++LE  +   YVLL  IYA     E +   RKL+  
Sbjct: 524 WGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMD 583

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
            GIK TPG S IE+   VH+FV  D+ HP +  IY KL+E+    KF GY+ D S V + 
Sbjct: 584 RGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLD 643

Query: 481 GSSSEDFLEKSSAY-HSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
               E   ++S+ Y HSEKLAIAFGL ++  G ++RIVKNLR            S  Y+R
Sbjct: 644 IGEEE---KESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNR 700

Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
           ++IVRDR R+HHFR G CSC DYW
Sbjct: 701 EVIVRDRTRFHHFRHGSCSCKDYW 724



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 195/401 (48%), Gaps = 38/401 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           + YA+++F+ +  P    WN++I+ +++   P  A+  Y  ML   +  PD +T+ F LK
Sbjct: 69  MEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGV-MPDEYTYPFLLK 127

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
              R  A+   +ELH  +++ G+   V V   L+  Y+ +G +  AR VFD   + D+V+
Sbjct: 128 RFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVT 187

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN +IS Y ++    E++KL++ M    V     TLV +LS+C+ +  LN+G  +HR   
Sbjct: 188 WNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVK 247

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG------- 270
           ++       + NAL+DMYA CG++D+A  +F  M+ RDV+SW +++ G+   G       
Sbjct: 248 DLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARN 307

Query: 271 ------------------------RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
                                   R  E +S F++M  A   PD  T + +L  C+H G 
Sbjct: 308 YFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGA 367

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           +E G E+    + +  +K        L+D+Y   G +EKA+ + N     D + W  ++ 
Sbjct: 368 LELG-EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIF 426

Query: 367 SCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACT 405
              I+     GE A+    Q+  AS    +   +  + ACT
Sbjct: 427 GLAIN---GYGEEALDMFSQMLKASITPDEVTCIGVLCACT 464



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 137/304 (45%), Gaps = 13/304 (4%)

Query: 82  ASLSRPDT----FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
            +LS P T       T  L   +  K++ + +++H   I +G     +V   ++     +
Sbjct: 5   TTLSPPPTHLPSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKH 64

Query: 138 --GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
             G +E AR VFD MP  +   WN++I  Y++      A+ +Y  M    V  D +T   
Sbjct: 65  ELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPF 124

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL       A+  G  LH    ++GF  +V+V NAL+ +Y+  G +  A  VF R  K D
Sbjct: 125 LLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGD 184

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           V++WN MI GY    + DE++  F +M      P SIT + +L  CS    +  G +  H
Sbjct: 185 VVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVG-KRVH 243

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL------LGSCK 369
             V    ++P       L+D+Y   G ++ AL + +     D + W  +      LG   
Sbjct: 244 RYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVG 303

Query: 370 IHRN 373
           + RN
Sbjct: 304 LARN 307


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/542 (37%), Positives = 320/542 (59%), Gaps = 34/542 (6%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS----------RP 87
           L+ A+ LF++I      +W S+I  + Q+    +A+F +   L+   +            
Sbjct: 137 LNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGV 196

Query: 88  DTFTFTFTLKACERV--KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           D+      + AC RV  K++ +C  +HG  ++ G+E C+ V   LM  YA  G I  +R 
Sbjct: 197 DSVLLGCVISACARVCVKSVTEC--VHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRK 254

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVG 204
           VFD M E D+ SWNS+I+ Y Q    +EA  L+  M +  +V  +  TL  +L +CAH G
Sbjct: 255 VFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSG 314

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL +G  +H    +M   +++ VG ++VDMY KCG ++ A   F R+++++V SW  M+ 
Sbjct: 315 ALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVA 374

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GYG+HG G EA+  F +M+  G  P+ ITF+ +L  CSH GL++EG  +F+ M   ++++
Sbjct: 375 GYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVE 434

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
           PGI+HY C+VDL GRAG L++A  +I       D ++W +LLG+C+IH+NVE+GEI+ + 
Sbjct: 435 PGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARK 494

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           L +L+ ++ G YVLL+ IYA     + V R R L+K++G+  TPG+S +E   +VH F+V
Sbjct: 495 LFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLV 554

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY--HSEKLAI 501
            DK HP  + IY  L+E+  + + +GY  + + V        D  EK      HSEKLA+
Sbjct: 555 GDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLY----DVDVEEKGMVLRVHSEKLAV 610

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           AFG+  +  G+ ++I+KNLR            S   +R++++RD  R+HHF+DGLCSCGD
Sbjct: 611 AFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGD 670

Query: 550 YW 551
           YW
Sbjct: 671 YW 672



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 186/369 (50%), Gaps = 18/369 (4%)

Query: 48  IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNK 107
           +      +WNS+I  FA+S   LQA++ ++ M   SL  P+  TF  T+K+C  +  L  
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSL-HPNRSTFPCTIKSCSSLYDLCA 104

Query: 108 CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ 167
            +++H      GY   + V++ L+  Y+  G +  AR +FD +PER++VSW S+IS Y Q
Sbjct: 105 GKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQ 164

Query: 168 ASFHLEALKLYERMRFED-----------VGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
                EA+ L++     D           VG+D   L C++S+CA V   ++   +H +A
Sbjct: 165 NERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLA 224

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF   + VGN L+D YAKCG +  +  VF  M + DV SWNS+I  Y  +G   EA 
Sbjct: 225 VKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAF 284

Query: 277 SFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           S F  M+  G    +++T   +L  C+H G ++ G +  H  V +  L+  +     +VD
Sbjct: 285 SLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIG-KCIHDQVVKMELEDNLVVGTSIVD 343

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL-EAASAGD 394
           +Y + G++E A +  +     +   W  ++    +H +   G+ AMK   ++       +
Sbjct: 344 MYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGH---GKEAMKVFYEMIRCGIKPN 400

Query: 395 YVLLATIYA 403
           Y+   ++ A
Sbjct: 401 YITFVSVLA 409



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 124/249 (49%), Gaps = 4/249 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+++YA      +S ++ +F+ ++     +WNSLI  +AQ+   ++A   ++ M+  
Sbjct: 236 GNTLMDAYA--KCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKR 293

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
              R +  T +  L AC    AL   + +H  V++   E  +VV T+++  Y   G +E 
Sbjct: 294 GEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEM 353

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR  FD +  +++ SW  +++ Y       EA+K++  M    +  +  T V +L++C+H
Sbjct: 354 ARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSH 413

Query: 203 VGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWN 260
            G L  G  + +++ CE      +   + +VD+  + G L  A+ +   M+ K D + W 
Sbjct: 414 AGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWG 473

Query: 261 SMIVGYGVH 269
           S++    +H
Sbjct: 474 SLLGACRIH 482



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 13/235 (5%)

Query: 144 RSVFDNMPERDLV-SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           RS+F    ++  V SWNSII+ + ++   L+AL  +  MR   +  +  T  C + SC+ 
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +  L  G  +H+ A   G+   ++V +AL+DMY+KCG L+ A  +F  + +R+V+SW SM
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 263 IVGYGVHGRGDEAISFFKQMLMAG-----------FHPDSITFLGLLCGCSHQGLVEEGV 311
           I GY  + R  EA+  FK+ L+                DS+  LG +     +  V+   
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSV-LLGCVISACARVCVKSVT 217

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           E  H +  +   +  +     L+D Y + G++  + +V +    +D   W +L+ 
Sbjct: 218 ECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIA 272


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/544 (39%), Positives = 312/544 (57%), Gaps = 19/544 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+ + A+S   S+ YA  +F QI+ P +  +N++IR    S++  +A+  Y  ML  
Sbjct: 65  GSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLER 124

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +  PD FT+ F LKAC  + AL +  ++H  V ++G E  V V   L+  Y   G IE 
Sbjct: 125 GI-EPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEH 183

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG-LDGFTLVCLLSSCA 201
           A  VF+ M E+ + SW+SII  +       E L L   M  E     +   LV  LS+C 
Sbjct: 184 ASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACT 243

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
           H+G+ N G  +H I        +V V  +L+DMY K G+L+   CVF  M +++  S+  
Sbjct: 244 HLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTV 303

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           +I G  +HGRG EA+S F  ML  G  PD + ++G+L  CSH GLV EG++ F+ +   +
Sbjct: 304 IITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEH 363

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEI 379
            +KP I+HYGC+VDL GRAG L+ A ++I  S P  P  V+WR+LL +CK+H N+EIGEI
Sbjct: 364 KIKPTIQHYGCMVDLMGRAGMLKGAYDLIK-SMPIKPNDVVWRSLLSACKVHHNLEIGEI 422

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
           A +N+ +L   + GDY++LA +YA  K    VAR R  +    +  TPG+S +E    V+
Sbjct: 423 AAENIFKLNQHNPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANRNVY 482

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
           KFV  DKS P  + IY  ++++  + KF GYT D S V +     ED   +   +HS+KL
Sbjct: 483 KFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLL--DVDEDEKRQRLKHHSQKL 540

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           AIAF L  T +G+ +RI +N+R            S+ Y R++ VRDR R+HHF+DG CSC
Sbjct: 541 AIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSC 600

Query: 548 GDYW 551
            DYW
Sbjct: 601 KDYW 604


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/539 (41%), Positives = 316/539 (58%), Gaps = 19/539 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y I   +SL+ A LLF++I       WN +IR +A +     AI  Y  M    L 
Sbjct: 42  LVNLYCIC--NSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLV 99

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD FTF F LKAC  + A+ + +++H  VIRSG E  V V   L+  YA  G +E+AR 
Sbjct: 100 -PDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQ 158

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD + ERD+V WNS+++ Y+Q     E+L L   M F  +     T V  +++ A  G 
Sbjct: 159 VFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGL 218

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  LH  +   GF  +  V  AL+DMYAK G+++ A  +F  + ++ V+SWN+MI G
Sbjct: 219 LPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITG 278

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y +HG  +EA+  FK+M      PD ITF+G+L  CSH GL+ EG  +F  M+S +N+ P
Sbjct: 279 YAMHGHANEALDLFKEM-KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWP 337

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            ++HY C++DL G  G+LE+A ++I       D  +W  LL SCKIH NVE+GE+A++ L
Sbjct: 338 TVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKL 397

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           V+LE    G+YV+L+ +YA     +GVAR R L+ + G+K +   SWIE+GN+VH F+ +
Sbjct: 398 VELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSE 457

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D SHP ++ IY +L+      K  GY     + +V     +D      + HSE+LAIAFG
Sbjct: 458 DTSHPKSEAIYAELKRTGKLMKEAGYAP--QVGSVFHDVEDDEKVDMVSCHSERLAIAFG 515

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L +T  GT L I+KNLR            S    R++ +RD  RYHHF+DG+CSCGD+W
Sbjct: 516 LISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 141/278 (50%), Gaps = 5/278 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L++C   KA+   ++LH  + + G     +++T L+  Y     +  A  +FD + +R+L
Sbjct: 8   LQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNL 67

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLH 213
             WN +I  Y     +  A+ LY +MR  D GL  D FT   +L +C+ + A+  G  +H
Sbjct: 68  FLWNVMIRGYAWNGPYELAISLYYQMR--DYGLVPDKFTFPFVLKACSALSAMEEGKKIH 125

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
           +     G    V+VG AL+DMYAKCG ++SA  VF ++ +RDV+ WNSM+  Y  +G+ D
Sbjct: 126 KDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPD 185

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           E+++  + M   G  P   TF+  +   +  GL+ +G E  H    R+  +   K    L
Sbjct: 186 ESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKE-LHGYSWRHGFESNDKVKTAL 244

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +D+Y ++G +  A  +         V W  ++    +H
Sbjct: 245 MDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMH 282



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 1/172 (0%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL SC    A+  G  LH   C++G   +  +   LV++Y  C +L +A  +F R+ KR+
Sbjct: 7   LLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRN 66

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           +  WN MI GY  +G  + AIS + QM   G  PD  TF  +L  CS    +EEG +  H
Sbjct: 67  LFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEG-KKIH 125

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
             V R  L+  +     L+D+Y + G +E A +V +     D V W ++L +
Sbjct: 126 KDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLAT 177


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/576 (37%), Positives = 319/576 (55%), Gaps = 47/576 (8%)

Query: 20  EIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM 79
           EI    LL   A   S SL+YA+ +F++I  P T  WN++IR ++ S  P +A+  Y+HM
Sbjct: 50  EIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHM 109

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           L  S+   + +TF F LKAC  + AL + Q++H  +I+ G+   +  + +L+  Y+ +G 
Sbjct: 110 LYHSVPH-NAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGD 168

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQ-------------------------------A 168
           I++AR +FD + +RD VSWNS+I  YT+                               A
Sbjct: 169 IKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGA 228

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
               EAL L+ RM+   + LD   LV  L +CA +G L+ G ++H    +        +G
Sbjct: 229 GKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILG 288

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
             L+DMYAKCG+L+ A  VF +M ++ V  W +MI GY +HGRG EA+ +F +M  AG  
Sbjct: 289 CVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVE 348

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           P+ +TF G+L  CSH GLV E    F  M   +  KP I+HYGC+VDL GRAG L++A E
Sbjct: 349 PNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEE 408

Query: 349 VI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407
           +I N     +  +W  LL +C IH N+E+G+   K L+Q++    G Y+ LA+I+A   +
Sbjct: 409 LIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGE 468

Query: 408 EEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF 467
               AR R+ +K  G+   PG S I +    H+F+  D+SHP    I   LE+I+ R + 
Sbjct: 469 WNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLRE 528

Query: 468 IGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------ 521
            GY     L  +     +   E +  +HSEKLA+ FGL +T  G ++RIVKNLR      
Sbjct: 529 EGYKP--KLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCH 586

Query: 522 ------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                 S  Y+R++++RDR R+H F+DG C+CGDYW
Sbjct: 587 TVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 43/348 (12%)

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA--NGVIEAARSVFDNMPE 152
           TL   +R   + + +++HG ++++G     + ++ L+   A+  +G +  AR+VFD +  
Sbjct: 21  TLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
            +   WN++I  Y+ +    EAL LY  M +  V  + +T   LL +C+ + AL     +
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV---- 268
           H    +MGF   +Y  N+L+++Y+K G++ SA  +F ++ +RD +SWNSMI GY      
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 269 ---------------------------HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
                                       G+  EA++ F +M  AG   D++  +  L  C
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260

Query: 302 SHQGLVEEGVEYFHMMVSRYNLK--PGIKHYGC-LVDLYGRAGKLEKALEVINTSSPSDP 358
           +  G++++G ++ H  + ++ ++  P +   GC L+D+Y + G LE+A+EV         
Sbjct: 261 ADLGVLDQG-KWIHAYIKKHEIEIDPIL---GCVLIDMYAKCGDLEEAIEVFRKMEEKGV 316

Query: 359 VLWRTLLGSCKIH-RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
            +W  ++    IH R  E  E  MK  +Q              + AC+
Sbjct: 317 SVWTAMISGYAIHGRGREALEWFMK--MQTAGVEPNQMTFTGILTACS 362


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/527 (38%), Positives = 304/527 (57%), Gaps = 16/527 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +S AQ++F+++       W  LI  +AQ      A+     M  A ++ P+  T+T  L+
Sbjct: 248 ISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA-PNKITYTSILQ 306

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C    AL   +++H ++I+SGY R + V   L+  Y   G ++ AR +F ++P RD+V+
Sbjct: 307 GCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVT 366

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++++ Y Q  FH EA+ L+ RM+ + +  D  T    L+SC+    L  G  +H+   
Sbjct: 367 WTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLV 426

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             G+   VY+ +ALV MYAKCG++D A  VF++M +R+V++W +MI G   HGR  EA+ 
Sbjct: 427 HAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALE 486

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
           +F+QM   G  PD +TF  +L  C+H GLVEEG ++F  M   Y +KP ++HY C VDL 
Sbjct: 487 YFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLL 546

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAG LE+A  VI T      P +W  LL +C+IH +VE GE A +N+++L+    G YV
Sbjct: 547 GRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYV 606

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
            L+ IYA     E   + R++++   +   PG SWIE+  +VH F V+DKSHP+A  IY 
Sbjct: 607 ALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYA 666

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
           +L ++  + K  GY  D   V       E+   ++   HSE+LAI +GL  TP GT +RI
Sbjct: 667 ELGKLTEQIKEQGYVPDTRFVL--HDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRI 724

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           VKNLR            S    R++I RD  R+HHF DG+CSCGD+W
Sbjct: 725 VKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 189/379 (49%), Gaps = 13/379 (3%)

Query: 3   LKKHARYVGLNKARQAHE------IHGEWLLNSYAISVSS---SLSYAQLLFNQIQNPQT 53
           L++ AR   L + R+ H       I     L +  +S+ +   SL+ A+ +F+ I++   
Sbjct: 103 LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNI 162

Query: 54  QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
            +W ++I AF      L+A   Y  M +A   +PD  TF   L A    + L   Q++H 
Sbjct: 163 VSWTAMIEAFVAGNQNLEAYKCYETMKLAG-CKPDKVTFVSLLNAFTNPELLQVGQKVHM 221

Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
            + ++G E    V T+L+  YA  G I  A+ +FD +PE+++V+W  +I+ Y Q      
Sbjct: 222 EIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDV 281

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           AL+L E+M+  +V  +  T   +L  C    AL  G  +HR   + G+   ++V NAL+ 
Sbjct: 282 ALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALIT 341

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY KCG L  A  +F  +  RDV++W +M+ GY   G  DEAI  F++M   G  PD +T
Sbjct: 342 MYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMT 401

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMV-SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           F   L  CS    ++EG      +V + Y+L   ++    LV +Y + G ++ A  V N 
Sbjct: 402 FTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ--SALVSMYAKCGSMDDARLVFNQ 459

Query: 353 SSPSDPVLWRTLLGSCKIH 371
            S  + V W  ++  C  H
Sbjct: 460 MSERNVVAWTAMITGCAQH 478



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 155/299 (51%), Gaps = 10/299 (3%)

Query: 71  QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130
           +A+   N M++   +R  +  F   L+ C R+++L + +E+H  +++SG +    +   L
Sbjct: 79  EALGILNTMILQG-TRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTL 137

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190
           +  YA  G +  AR VFD + +R++VSW ++I  +   + +LEA K YE M+      D 
Sbjct: 138 LSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDK 197

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
            T V LL++  +   L +G  +H    + G      VG +LV MYAKCG++  A  +F +
Sbjct: 198 VTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDK 257

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           + +++V++W  +I GY   G+ D A+   ++M  A   P+ IT+  +L GC+    +E G
Sbjct: 258 LPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHG 317

Query: 311 VEYFHMMVSRYNLKPG----IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +     V RY ++ G    I     L+ +Y + G L++A ++       D V W  ++
Sbjct: 318 KK-----VHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMV 371



 Score = 40.0 bits (92), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 1/114 (0%)

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
           RK D L+ +  +      GR  EA+     M++ G    S  F GLL  C+    +E+G 
Sbjct: 57  RKVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGR 116

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           E  H  + +  ++P       L+ +Y + G L  A  V +     + V W  ++
Sbjct: 117 E-VHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMI 169


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/458 (43%), Positives = 288/458 (62%), Gaps = 18/458 (3%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           + +H  VIRSG+   + V  +L+  YA  G + +A  VFD MPE+DLV+WNS+I+ + + 
Sbjct: 8   ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAEN 67

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
               EAL LY  M  + +  DGFT+V LLS+CA +GAL +G  +H    ++G   +++  
Sbjct: 68  GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS 127

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM-LMAGF 287
           N L+D+YA+CG ++ A  +F  M  ++ +SW S+IVG  V+G G EAI  FK M    G 
Sbjct: 128 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 187

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            P  ITF+G+L  CSH G+V+EG EYF  M   Y ++P I+H+GC+VDL  RAG+++KA 
Sbjct: 188 LPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAY 247

Query: 348 EVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           E I  S P  P  V+WRTLLG+C +H + ++ E A   ++QLE   +GDYVLL+ +YA  
Sbjct: 248 EYIK-SMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASE 306

Query: 406 KDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRA 465
           +    V + RK +  +G+K  PG S +E+GN+VH+F++ DKSHP +D IY KL+E+  R 
Sbjct: 307 QRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRL 366

Query: 466 KFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---- 521
           +  GY    S V V     E   E +  YHSEK+AIAF L +TP+ + + +VKNLR    
Sbjct: 367 RSEGYVPQISNVYVDVEEEEK--ENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCAD 424

Query: 522 --------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                   S  Y+R+++VRDR R+HHF++G CSC DYW
Sbjct: 425 CHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 126/250 (50%), Gaps = 6/250 (2%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+++      AWNS+I  FA++  P +A+  Y  M    + +PD FT    L AC ++ 
Sbjct: 45  VFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGI-KPDGFTIVSLLSACAKIG 103

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           AL   + +H ++I+ G  R +  S  L+  YA  G +E A+++FD M +++ VSW S+I 
Sbjct: 104 ALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIV 163

Query: 164 CYTQASFHLEALKLYERMRFEDVGLD-GFTLVCLLSSCAHVGALNMGI-FLHRIACEMGF 221
                 F  EA++L++ M   +  L    T V +L +C+H G +  G  +  R+  E   
Sbjct: 164 GLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKI 223

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              +     +VD+ A+ G +  A+     M  + +V+ W +++    VHG  D  ++ F 
Sbjct: 224 EPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD--LAEFA 281

Query: 281 QMLMAGFHPD 290
           ++ +    P+
Sbjct: 282 RIQILQLEPN 291



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 105/200 (52%), Gaps = 1/200 (0%)

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           + +G  +H +    GF   +YV N+L+ +YA CG++ SA+ VF +M ++D+++WNS+I G
Sbjct: 4   VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 63

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           +  +G+ +EA++ + +M   G  PD  T + LL  C+  G +  G +  H+ + +  L  
Sbjct: 64  FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG-KRVHVYMIKVGLTR 122

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
            +     L+DLY R G++E+A  + +     + V W +L+    ++   +      K + 
Sbjct: 123 NLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYME 182

Query: 386 QLEAASAGDYVLLATIYACT 405
             E     +   +  +YAC+
Sbjct: 183 STEGLLPCEITFVGILYACS 202


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/535 (37%), Positives = 314/535 (58%), Gaps = 16/535 (2%)

Query: 30  YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
           Y  +    L  A LLFN+++     +W+ +I  F ++    +  F     L+ + S+PD 
Sbjct: 43  YMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKN-GDYERCFQTFRELIRAGSKPDN 101

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           F+  F +KAC     L   + +H  V+++G      V + L+  YA  G+I+ A+ +FD 
Sbjct: 102 FSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDR 161

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           MP++DLV+   +I+ Y +     E+  L+++MR +    D   +V ++++CA +GA+N  
Sbjct: 162 MPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKA 221

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H   C   +   V +G A++DMYAKCG++DS+  +F RM +++V+SW++MI  YG H
Sbjct: 222 RLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYH 281

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G+G EA+  F  ML +G  P+ ITF+ LL  CSH GLV++G++ F +M   Y ++P +KH
Sbjct: 282 GQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKH 341

Query: 330 YGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
           Y C+VDL GRAG+L++AL +I N     D  +W   LG+C+IHR V++ E A K L+ L+
Sbjct: 342 YTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQ 401

Query: 389 AASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSH 448
             + G Y+LL+ IYA     + VA+ R L+    +K  PG++WIE+ N +++F   D SH
Sbjct: 402 TQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSH 461

Query: 449 PDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
             ++ IY  L+ +  + +  GY  D +  +V     E+        HSEKLAIAFGL  T
Sbjct: 462 LRSNEIYEMLKSLSQKLESAGYVPDTN--SVLHDVDEEVKLGILHAHSEKLAIAFGLIAT 519

Query: 509 PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           PDGT +RI KNLR            S    RD+IVRD  R+HHF++G+CSCGDYW
Sbjct: 520 PDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 141/286 (49%), Gaps = 8/286 (2%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           PD F  T       + + + + +++H  V  +G    ++V+  L+   A +  +  A  +
Sbjct: 3   PDFFISTLF-----KCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLL 57

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           F+ M ERD VSW+ +I  + +   +    + +  +       D F+L  ++ +C     L
Sbjct: 58  FNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGL 117

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            MG  +H    + G     +V + LVDMYAKCG +D+A  +F RM K+D+++   MI GY
Sbjct: 118 IMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGY 177

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG-VEYFHMMVSRYNLKP 325
              G+ +E+   F QM   GF PD +  + ++  C+  G + +  + + ++   RY+L  
Sbjct: 178 AECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLD- 236

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            ++    ++D+Y + G ++ + E+ +     + + W  ++G+   H
Sbjct: 237 -VELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYH 281


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/537 (39%), Positives = 320/537 (59%), Gaps = 25/537 (4%)

Query: 29  SYAISVSS-SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP 87
           SYA +V +  LSYA  +F  I NP    WN++ R +A+S +P  A+ +Y  M+++ +  P
Sbjct: 70  SYAYNVFTWVLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRI-EP 128

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           DT T+ F LKA  +   + + + +H   IR+G+E  V V  +L+  YAA G  E+A +VF
Sbjct: 129 DTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVF 188

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           + M +RDLV+  S+I+ +       EAL L+  M  E V  DGFT+V LLS+ A +GAL 
Sbjct: 189 ELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALE 248

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           +G  +H    ++G  E+ +V N+L+D+YAKC  +           +R+ +SW S+IVG  
Sbjct: 249 LGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEX--------ERNAVSWTSLIVGLA 300

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           V+G G+EA+  F++M   G  P  ITF+G+L  CSH G+++EG +YF  M   + + P I
Sbjct: 301 VNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRI 360

Query: 328 KHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           +HYGC+VDL  RAG +++A E I N     + V WRTLLG+C IH ++ +GE A  +L++
Sbjct: 361 EHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLK 420

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
           LE   +GDYVLL+ +Y        V   R+ +  +G+K T G+S +E+GN+V++F + ++
Sbjct: 421 LEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNR 480

Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLA 506
           SHP +  +Y  LE+I    K  GY    + V       E   E++ +YHSEK AIAF   
Sbjct: 481 SHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEK--EQALSYHSEKXAIAFMRL 538

Query: 507 TTPDGTSLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            T  GT++R++KNLR  A            Y R++++RDR R+HHFR G CSC DYW
Sbjct: 539 NTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/553 (36%), Positives = 323/553 (58%), Gaps = 28/553 (5%)

Query: 17  QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYY 76
           Q++E+     + +Y  +   +L  ++ +F+ +      +WN+L+  +AQ+  P +A+  Y
Sbjct: 339 QSNELVANAFIAAY--TRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLY 396

Query: 77  NHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136
             M  + L  PD FT    L AC R+K+L+  +E+HGF +R+G      +  +L+  Y  
Sbjct: 397 LQMTDSGLD-PDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYIC 455

Query: 137 NGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCL 196
            G   AA+ +FD M  R LVSWN +I+ Y+Q     EA+ L+ +M  + +      ++C+
Sbjct: 456 CGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCV 515

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
             +C+ + AL +G  LH  A +    E ++V ++++DMYAK G +  +  +F R+R++DV
Sbjct: 516 CGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDV 575

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
            SWN +I GYG+HGRG EA+  F++ML  G  PD  TF G+L  CSH GLVE+G+EYF+ 
Sbjct: 576 ASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQ 635

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNV 374
           M++ +N++P ++HY C+VD+ GRAG+++ AL +I    P DP   +W +LL SC+IH N+
Sbjct: 636 MLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIE-EMPGDPDSRIWSSLLSSCRIHGNL 694

Query: 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEI 434
            +GE     L++LE     +YVL++ ++A +   + V R R  +K  G++   G SWIE+
Sbjct: 695 GLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEV 754

Query: 435 GNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA- 493
           G +VH F++ D+  P+ + +      +  +   IGYT D      +GS   D  E+    
Sbjct: 755 GGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPD------TGSVLHDLEEEDKIG 808

Query: 494 ---YHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYH 538
               HSEKLAI+FGL  T  G  +R+ KNLR            S   +RD++VRD  R+H
Sbjct: 809 ILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFH 868

Query: 539 HFRDGLCSCGDYW 551
           HFRDG+CSCGDYW
Sbjct: 869 HFRDGICSCGDYW 881



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 181/390 (46%), Gaps = 8/390 (2%)

Query: 21  IHGEWLLNSYAISVSSS---LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYN 77
           ++ E ++N+  I + S    LS AQLLF++       +WNS+I  +A+     +  +   
Sbjct: 235 LNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQ 294

Query: 78  HMLMASLS-RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136
            M       + D FT    L  C     L   +ELHG+  R G +   +V+   +  Y  
Sbjct: 295 KMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTR 354

Query: 137 NGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCL 196
            G + ++  VFD M  + + SWN+++  Y Q S   +AL LY +M    +  D FT+  L
Sbjct: 355 CGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSL 414

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           L +C+ + +L+ G  +H  A   G     ++G +L+ +Y  CG   +A  +F  M  R +
Sbjct: 415 LLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSL 474

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           +SWN MI GY  +G  DEAI+ F+QML  G  P  I  + +   CS    +  G E  H 
Sbjct: 475 VSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKE-LHC 533

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVE 375
              + +L   I     ++D+Y + G +  +  + +     D   W  ++    IH R  E
Sbjct: 534 FALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKE 593

Query: 376 IGEIAMKNLVQLEAASAGDYVLLATIYACT 405
             E+  + +++L      D+     + AC+
Sbjct: 594 ALEL-FEKMLRL-GLKPDDFTFTGILMACS 621



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 175/352 (49%), Gaps = 14/352 (3%)

Query: 24  EWLLNSYAISVSS---SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           +++LN+  I++ S   S S ++++F++++      WN+++ A+ ++     A+  ++ ++
Sbjct: 33  DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 92

Query: 81  MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
             +  +PD FT    +KAC  +  L   Q +HG   +      V V   L+  Y   G++
Sbjct: 93  SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 152

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF--EDVGLDGFTLVCLLS 198
           E A  VF++MPER+LVSWNSII  +++  F  E+   +  M    E    D  TLV +L 
Sbjct: 153 EEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLP 212

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
            CA    +  G+ +H +A ++G  E + V N+L+DMY+KC  L  A  +F +  K++++S
Sbjct: 213 VCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVS 272

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLM--AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           WNSMI GY             ++M    A    D  T L +L  C  +  ++  ++  H 
Sbjct: 273 WNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQS-LKELHG 331

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKL---EKALEVINTSSPSDPVLWRTLL 365
              R+ L+         +  Y R G L   E+  ++++T + S    W  LL
Sbjct: 332 YSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSS---WNALL 380



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 173/342 (50%), Gaps = 18/342 (5%)

Query: 96  LKACERVKALNKCQELHGFVIRSG-YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           L+AC + K +   + LH  V  S  +    V++T ++  Y+  G    +R VFD +  ++
Sbjct: 5   LQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKN 64

Query: 155 LVSWNSIISCYTQASFHLEALKLY-ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           L  WN+I+S YT+     +A+ ++ E +   +   D FTL C++ +CA +  L +G  +H
Sbjct: 65  LFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIH 124

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            +A +M  V  V+VGNAL+ MY KCG ++ A  VF  M +R+++SWNS+I G+  +G   
Sbjct: 125 GMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQ 184

Query: 274 EAISFFKQMLMA--GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           E+ + F++ML+    F PD  T + +L  C+ +  +E+G+   H +  +  L   +    
Sbjct: 185 ESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMA-VHGLAVKLGLNEELMVNN 243

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA- 390
            L+D+Y +   L +A  + + +   + V W +++G      +V      +   +Q E A 
Sbjct: 244 SLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDV-CRTFYLLQKMQTEDAK 302

Query: 391 -SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSW 431
             A ++ +L  +  C +  E             +K   G+SW
Sbjct: 303 MKADEFTILNVLPVCLERSE----------LQSLKELHGYSW 334


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/545 (38%), Positives = 319/545 (58%), Gaps = 19/545 (3%)

Query: 21  IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           +H  W    +  S    ++YA  +F+   +P    WN++IR ++ S SP+ AI  Y  M 
Sbjct: 1   MHQGWRPQGHP-SPHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMF 59

Query: 81  MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
           +  +S P+++TF F L AC ++  L + QELH  ++++G +    +   L++ YAA G +
Sbjct: 60  LCGIS-PNSYTFGFVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCM 118

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
           + A  +FD MPE D  SW++++S Y+Q    +E LKL   M+ E+V  D FTL  ++  C
Sbjct: 119 DYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVC 178

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
             +G L++G ++H    + G    V +G ALV MY+KCG+LD+A  VF  M +RDV +W+
Sbjct: 179 GDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWS 238

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
            MI GY +HG  ++A+  F  M  +   P+ +TF  +L   SH GLVE+G + F  M + 
Sbjct: 239 IMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTE 298

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGE 378
           Y + P IKHYGC+VDL+ RAG +  A + I T  P +P  VLWRTLLG+CK H    +GE
Sbjct: 299 YKITPQIKHYGCMVDLFCRAGMVGHAHKFIQT-MPIEPNVVLWRTLLGACKTHGYKGLGE 357

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
              + +++L+ +S  +YV ++ +YA       V + R L+K    K   GWS IEI   V
Sbjct: 358 HISRKILKLDPSSPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMV 417

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           HKF++ ++SHP  + IY  L ++  + K +G+    S V V     E+  E +   HSE+
Sbjct: 418 HKFIMGEESHPKREKIYGMLHQMARKLKQVGHVA--STVDVLHDIDEEEKEYALGLHSER 475

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LAIA+GL  TP+G+ +RIVKNLR            S  Y+R++I+RDRV +HHFR+  CS
Sbjct: 476 LAIAYGLLHTPNGSPIRIVKNLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCS 535

Query: 547 CGDYW 551
           C DYW
Sbjct: 536 CNDYW 540


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/449 (45%), Positives = 281/449 (62%), Gaps = 27/449 (6%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           R +V    ++ GYA  G +  AR +FD   +RD  SW+S+IS Y +     EAL+L+  M
Sbjct: 145 RDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREM 204

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES------VYVGNALVDMY 235
           R   V  D  ++V +LS+C+ +GAL +G  +HR      FVES      + +G ALVDMY
Sbjct: 205 RVAGVAPDCISMVSVLSACSAMGALAIGAEVHR------FVESNRVEVDMKLGTALVDMY 258

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           AKCG+++++  VF  M  +DVL+W+SMI+G   HG G +A+S F +M+  G  P+ ITF+
Sbjct: 259 AKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFI 318

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS- 354
           G+L  C+H GLV +G +YF  M   + + P ++HYGC+VDL GRAG +E+A+E+I + + 
Sbjct: 319 GVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTF 378

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
             DP++WRTLLG+C+IH+NVEI E AM  L  L+  + G YVLL+ IYA     EGVA  
Sbjct: 379 KPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEM 438

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
           RK I+   I+  PG S IE  N VH+FV  D+SHP  + IY+ LEE+M R +  GY    
Sbjct: 439 RKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMT 498

Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
           SLV       E   +++ A HSEKLAIAFGL  TP  ++LRI KNLR            S
Sbjct: 499 SLVL--QDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLIS 556

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +AY R LIVRDR R+HHF +G CSC DYW
Sbjct: 557 LAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 142/309 (45%), Gaps = 13/309 (4%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           W    +  +V   +  A+ +F+  ++    +W+S+I A+A+     +A+  +  M +A +
Sbjct: 150 WNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGV 209

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
           + PD  +    L AC  + AL    E+H FV  +  E  + + T L+  YA  G IE + 
Sbjct: 210 A-PDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSL 268

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VF  MP +D+++W+S+I          +AL L+  M  + +  +  T + +L +C HVG
Sbjct: 269 KVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVG 328

Query: 205 ALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSM 262
            +N G  +   ++   G V  +     +VD+  + G+++ A  +   M  K D + W ++
Sbjct: 329 LVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTL 388

Query: 263 IVGYGVHGR---GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           +    +H      +EA++  K +      P +     LL     Q    EGV      + 
Sbjct: 389 LGACRIHKNVEIAEEAMAKLKVL-----DPLADGHYVLLSNIYAQANSWEGVAEMRKTIR 443

Query: 320 RYNLK--PG 326
           R N++  PG
Sbjct: 444 RENIQRVPG 452



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 36/189 (19%)

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
           I L R A +      V++ N ++  Y   G +  A  VF  M  RD++SWN+MI GY V 
Sbjct: 101 IALARAAFDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAV- 159

Query: 270 GRGD---------------------------------EAISFFKQMLMAGFHPDSITFLG 296
            RGD                                 EA+  +++M +AG  PD I+ + 
Sbjct: 160 -RGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVS 218

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
           +L  CS  G +  G E  H  V    ++  +K    LVD+Y + G +E +L+V +     
Sbjct: 219 VLSACSAMGALAIGAE-VHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVK 277

Query: 357 DPVLWRTLL 365
           D + W +++
Sbjct: 278 DVLTWSSMI 286


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/539 (38%), Positives = 321/539 (59%), Gaps = 17/539 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S    L  A+ +F+++++    +W ++I   AQ   P +A+  ++ M+ +   
Sbjct: 126 LMNMY--SNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENV 183

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +P+  T    L AC R + L   + +H ++   G+ R VV++T LM  Y   G ++ AR 
Sbjct: 184 KPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARD 243

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD   E++L SWN +I+ + + S + EAL L+  M+ + +  D  T+  LL +C H+GA
Sbjct: 244 LFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGA 303

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L +G +LH    +      V +G ALVDMYAKCG++++A  VF  M ++DV++W ++I+G
Sbjct: 304 LELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILG 363

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
             + G+ + A+ +F +M + G  PD+ITF+G+L  CSH G V+EG+ +F+ M   Y ++P
Sbjct: 364 LAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQP 423

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            I+HYG LVD+ GRAG++ +A E+I +     D  +   LLG+C+IH N+E  E A K L
Sbjct: 424 TIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQL 483

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           ++++   +G YVLL+ IY  +K  E   RTR+L+   G++  PG S IE+   VH+FV  
Sbjct: 484 LEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKG 543

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D SH  +  I   LE+++ + K  GY  D+S V    +  E   E   + HSEKLAIAFG
Sbjct: 544 DSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEK--ETELSLHSEKLAIAFG 601

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L +T  GT +R+VKNLR            S  Y+R++IVRDR R+HHF+DG CSC  +W
Sbjct: 602 LLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 177/336 (52%), Gaps = 6/336 (1%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           ++  S SL YA+L+F+QI NP +   NS+IR         +A+ +Y  M++  L  PD +
Sbjct: 31  SLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLI-PDRY 89

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           TF    K+C   +  ++ +++H    + G+         LM  Y+  G + +AR VFD M
Sbjct: 90  TFPSLFKSC---RNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKM 146

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYER-MRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
            ++ +VSW ++I  + Q     EA++L++R M+ E+V  +  TLV +L++CA    L M 
Sbjct: 147 EDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMV 206

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H    E GF   V +   L+D+Y KCG +  A  +F + +++++ SWN MI G+   
Sbjct: 207 KRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVED 266

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
              +EA+  F++M   G   D +T   LL  C+H G +E G ++ H  + +  +   +  
Sbjct: 267 SNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELG-KWLHAYIKKQRIDVDVAL 325

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
              LVD+Y + G +E A++V +     D + W  L+
Sbjct: 326 GTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALI 361



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 142/308 (46%), Gaps = 16/308 (5%)

Query: 105 LNKCQELHGFVIRSG--YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
           +++ +++H  ++R+G  ++               +G ++ AR VF  +P     + NSII
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
              T  + H EAL  Y+ M  + +  D +T   L  SC +      G  +H  + ++GF 
Sbjct: 61  RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFA 117

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD---EAISFF 279
              Y  N L++MY+ CG L SA  VF +M  + V+SW +MI   GVH + D   EA+  F
Sbjct: 118 SDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMI---GVHAQWDQPNEAVRLF 174

Query: 280 KQMLMA-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
            +M+ +    P+ +T + +L  C+    +   V+  H  +  +     +     L+D+Y 
Sbjct: 175 DRMMKSENVKPNEVTLVNVLTACARARDLAM-VKRIHEYIDEHGFGRHVVLNTVLMDVYC 233

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           + G ++ A ++ + +   +   W  ++       N E   +  + +        GD V +
Sbjct: 234 KCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQT--KGIKGDKVTM 291

Query: 399 AT-IYACT 405
           A+ + ACT
Sbjct: 292 ASLLLACT 299


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/540 (38%), Positives = 323/540 (59%), Gaps = 19/540 (3%)

Query: 27  LNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR 86
           L S+A + +S +SY + LF  I  P T  ++SLI   ++   P +++  Y  ML+A++S 
Sbjct: 57  LLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISS 116

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
            + +TF+  +K+   + A +  + +H  V   GY     V   L+  YA +G +  AR V
Sbjct: 117 SN-YTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKV 175

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD MPE+ +V+WNS+IS Y Q  F  EA++L+  M+   V  D  T V LLS+CA VGA+
Sbjct: 176 FDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAI 235

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            +G ++H       F  +V +G AL++MY++CGN+  A  VF  M ++++++W +MI GY
Sbjct: 236 GLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGY 295

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
           G+HG G +AI  F +M   G  P+++TF+ +L  C+H GLV+EG + F  M   Y L P 
Sbjct: 296 GMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPS 355

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSD--PVLWRTLLGSCKIHRNVEIGEIAMKNL 384
           ++H  C+VD+ GRAG L +A + I  +SP +  P +W  +LG+CK+H+N ++G    ++L
Sbjct: 356 VEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHL 415

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           + +E  + G YV+L+ IYA     + V + R ++  N +K   G+S I++ ++V+ F + 
Sbjct: 416 LSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMG 475

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTK-DESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
           DKSHP  + IY  L+E+M R +  GY    ES++        ++  +   YHSEKLAIAF
Sbjct: 476 DKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEVEEEEREYALR---YHSEKLAIAF 532

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           GL  T  G ++RIVKNLR            SI  +R++ VRDR+R+HHF+DG CSC DYW
Sbjct: 533 GLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREINVRDRLRFHHFKDGSCSCQDYW 592



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 152/308 (49%), Gaps = 6/308 (1%)

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR-GYAANGVIEAARSVFDNMPERDLV 156
           A  R+K L   Q++H  +I +G  R   + T L+   YAA   I   R +F ++P+ D  
Sbjct: 28  AGPRLKPL---QQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTF 84

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            ++S+I+  ++ SF  E+L  Y RM   ++    +T   ++ S A + A ++G  +H   
Sbjct: 85  LFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHV 144

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              G+    YV  ALV  YAK G++  A  VF +M ++ V++WNSMI GY  +G G EA+
Sbjct: 145 YICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAV 204

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F  M   G  PDS TF+ LL  C+  G +  G  + H  ++R      +     L+++
Sbjct: 205 ELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGF-WVHEYIARNCFDLNVVLGTALMNM 263

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           Y R G + KA EV ++    + V W  ++    +H +     I + N +  +     +  
Sbjct: 264 YSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGS-QAIELFNEMSFDGPRPNNVT 322

Query: 397 LLATIYAC 404
            +A + AC
Sbjct: 323 FVAVLSAC 330


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/575 (36%), Positives = 319/575 (55%), Gaps = 64/575 (11%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           + YA+ LF+ I  P   +WN + + +++   P   +  Y  ML  ++ +PD +T+ F  K
Sbjct: 64  MCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNV-KPDCYTYPFLFK 122

Query: 98  ACERVKALNKCQELHGFVIR---------------------------------------- 117
              R  AL   +ELH  V++                                        
Sbjct: 123 GFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVT 182

Query: 118 -----SGYERC---VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
                SGY R    V+  T ++ G+   G ++AAR  F  MPERD VSW ++I  Y + +
Sbjct: 183 WNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLN 242

Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
            + EAL L+  M+   +  D FT+V +L++CA +GAL +G ++     +       +VGN
Sbjct: 243 CYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGN 302

Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
           AL+DMY KCGN++ A  +F+ + +RD  +W +M+VG  ++G G+EA++ F QML A   P
Sbjct: 303 ALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTP 362

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           D +T++G+L  C+H G+V+EG ++F  M +R+ ++P I HYGC+VDL G+AG L++A E+
Sbjct: 363 DEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEI 422

Query: 350 I-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408
           I N     + ++W  LLG+C+IH++ E+ E A++ +++LE  +   YVL   IYA     
Sbjct: 423 IKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKW 482

Query: 409 EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFI 468
           + +   R+++   GIK TPG S IE+   VH+FV  D+SHP    IY KL ++    K  
Sbjct: 483 DKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIA 542

Query: 469 GYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------- 521
           GY+ + S V +    +E+  E +   HSEKLAIAFGL  +  G ++RIVKNLR       
Sbjct: 543 GYSPNTSEVFL--DIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHH 600

Query: 522 -----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                S  Y R++IVRDR R+HHFR G CSC DYW
Sbjct: 601 VAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 154/380 (40%), Gaps = 58/380 (15%)

Query: 79  MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN- 137
           M+  + S+    T    L   E  K++   +++H   I++G   C  +  N +  +  + 
Sbjct: 1   MISMACSQSSPVTENPPLSLFETCKSMYHLKQIHSRTIKTGI-ICNPIIQNKILSFCCSR 59

Query: 138 --GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
             G +  AR +FD +PE  + SWN +   Y++ +     + LY  M   +V  D +T   
Sbjct: 60  EFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPF 119

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           L        AL +G  LH    + G   +V+  NAL++MY+ CG +D A  +F    K D
Sbjct: 120 LFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSD 179

Query: 256 VLSWNSMIVGY---------------GVHGRGD--------------------------- 273
           V++WN+MI GY               G    G                            
Sbjct: 180 VVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYL 239

Query: 274 ------EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
                 EA+  F++M  +   PD  T + +L  C+  G +E G E+    + +  +K   
Sbjct: 240 RLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELG-EWIRTYIDKNKVKNDT 298

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
                L+D+Y + G +E AL + NT    D   W  ++    I+     GE A+    Q+
Sbjct: 299 FVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAIN---GCGEEALNMFSQM 355

Query: 388 EAAS--AGDYVLLATIYACT 405
             AS    +   +  + ACT
Sbjct: 356 LKASVTPDEVTYVGVLSACT 375


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/577 (37%), Positives = 328/577 (56%), Gaps = 32/577 (5%)

Query: 3   LKKHARYVGLNKARQAH-----------EIHGEWLLNSYAISVSSSLSYAQLLFNQIQNP 51
           LK H     ++K +QAH            +    L++  A+S S  L+YA+ LF Q+QNP
Sbjct: 17  LKTHC--TSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNP 74

Query: 52  QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111
                N++IR +A+S +P +A+  Y  M+   +   D +T+ F L AC R+ A+   +  
Sbjct: 75  DPFICNTMIRGYARSQNPYEAVSLYYFMVERGVP-VDNYTYPFVLAACARLGAVKLGRRF 133

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           H  V+++G+   + V   L++ Y   G    A  VFD    RD+V+WN +I+ +      
Sbjct: 134 HCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLS 193

Query: 172 LEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE---SVYV 227
            +A  L + M + +++  D  T+V L+ +CA +G L  G FLH  + E+   E    + +
Sbjct: 194 EKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVL 253

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
             ALVDMYAKCG++D A  VF RMR R+V +WN++I G  +HG G++AIS F QM     
Sbjct: 254 ETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKL 313

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            PD +TF+ LLC CSH GLV+EG+  F  M +++ ++P ++HYGC+VDL  RA K++ AL
Sbjct: 314 MPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDAL 373

Query: 348 EVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
             I N    ++ VLW TLLG+C+   + ++ E   + +++LE  S G YV+L+ +YA   
Sbjct: 374 AFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVS 433

Query: 407 DEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAK 466
             +   + RK +K+ GI+ TPG SWIE+   +H+FV  D+SH   + IY  +EE+  R  
Sbjct: 434 QWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVN 493

Query: 467 FIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----- 521
             G         V     E+  E S   HSEKLAIA GL +TP G+ +RIVKNLR     
Sbjct: 494 LDG-GHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDC 552

Query: 522 -------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                  S  Y+R+++ RDR R+HHF++G CSC D+W
Sbjct: 553 HSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/560 (39%), Positives = 319/560 (56%), Gaps = 49/560 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           LS A+ LF  I      +WNS+I AFAQ   P  A+  +  M   ++  P++ T    L 
Sbjct: 177 LSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENV-MPNSVTMVGVLS 235

Query: 98  ACERVKALNKCQELHGFVIRSG--------------YERCVVVS---------------- 127
           AC +   L   + +  ++ R G              Y +C  V                 
Sbjct: 236 ACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFS 295

Query: 128 -TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T ++ GYA  G  +AAR VF+ MP +++ +WN +IS Y Q     EAL ++  ++   +
Sbjct: 296 WTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKI 355

Query: 187 G-LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
              D  TLV  LS+CA +GA+++G ++H      G V + ++ ++LVDMYAKCG+L+ A 
Sbjct: 356 AKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKAL 415

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  + +RDV  W++MI G G+HGRG  AI  F +M  A   P+S+TF  +LC CSH G
Sbjct: 416 EVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAG 475

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN--TSSPSDPVLWRT 363
           LV+EG  +FH M   Y + P +KHY C+VD+ GRAG LE+A+E+IN  +++PS  V W  
Sbjct: 476 LVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASV-WGA 534

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LLG+C +H NVE+GE+A   L++LE  + G  VLL+ IYA T   E V+  RKL++   +
Sbjct: 535 LLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTEL 594

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
           K  PG S IE    VH+F+V D +HP +  IY KLEEI  + K +GY  ++S + +    
Sbjct: 595 KKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHL-LQLIE 653

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIV 531
            +D  E++ + HSEKLAIAFGL T      +R+VKNLR            S  Y RD+++
Sbjct: 654 EDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILL 713

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RDR R+HHFRDG CSC DYW
Sbjct: 714 RDRYRFHHFRDGHCSCMDYW 733



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 186/378 (49%), Gaps = 33/378 (8%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L  + A+S  S+L YA+ LF+QI  P    WN+LIRA+A S  P Q+   +  +L     
Sbjct: 63  LFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCED 122

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+ FTF F +KA   +KA      +HG  I+  +   + +  +L+R Y A G +  A  
Sbjct: 123 LPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAER 182

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F  +  +D+VSWNS+IS + Q +   +AL+L+ +M  E+V  +  T+V +LS+CA    
Sbjct: 183 LFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLD 242

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G ++       G    + + NA++DMY KCG++D A  +F  M +RDV SW  M+ G
Sbjct: 243 LEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDG 302

Query: 266 YG-------------------------------VHGRGDEAISFFKQMLMAGF-HPDSIT 293
           Y                                 +G+  EA++ F ++ ++    PD +T
Sbjct: 303 YAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVT 362

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
            +  L  C+  G ++ G  + H+ + R  +         LVD+Y + G LEKALEV  + 
Sbjct: 363 LVSTLSACAQLGAIDLG-GWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSV 421

Query: 354 SPSDPVLWRTLLGSCKIH 371
              D  +W  ++    +H
Sbjct: 422 EERDVYVWSAMIAGLGMH 439



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 140/275 (50%), Gaps = 9/275 (3%)

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG--VIEAARSVFDNMPE 152
           T+  C   K L   +E+H  ++R+G       ++ L    A +    ++ AR++FD +P+
Sbjct: 31  TIDKCSSSKQL---KEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQ 87

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERM--RFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
            +L +WN++I  Y  +S   ++  ++  +  + ED+  + FT   ++ + + + A  +G 
Sbjct: 88  PNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLP-NKFTFPFVIKAASELKASRVGT 146

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H +A ++ F   +Y+ N+LV  Y  CG+L  A  +F  +  +DV+SWNSMI  +    
Sbjct: 147 AVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGN 206

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
             ++A+  F +M      P+S+T +G+L  C+ +  +E G  +    + R  +K  +   
Sbjct: 207 CPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFG-RWVCSYIERKGIKVDLTLC 265

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             ++D+Y + G ++ A ++ +     D   W  +L
Sbjct: 266 NAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIML 300


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/566 (36%), Positives = 322/566 (56%), Gaps = 47/566 (8%)

Query: 30  YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
           +  S+   +  A+ +F+     +   WN ++  + +     ++   +  M    +S P++
Sbjct: 150 HMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVS-PNS 208

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
            T    L AC ++K L   + ++ ++     ER +++   L+  +AA G ++ A+SVFDN
Sbjct: 209 VTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDN 268

Query: 150 M-------------------------------PERDLVSWNSIISCYTQASFHLEALKLY 178
           M                               PERD VSW ++I  Y + +  +EAL L+
Sbjct: 269 MKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALF 328

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             M+  +V  D FT+V +L++CAH+GAL +G ++     +       +VGNAL+DMY KC
Sbjct: 329 REMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKC 388

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           GN+  A  VF  M  +D  +W +MIVG  ++G G+EA++ F  M+ A   PD IT++G+L
Sbjct: 389 GNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVL 448

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSD 357
           C C+H G+VE+G  +F  M  ++ +KP + HYGC+VDL GRAG+LE+A EVI N     +
Sbjct: 449 CACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPN 508

Query: 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
            ++W +LLG+C++H+NV++ E+A K +++LE  +   YVLL  IYA  K  E + + RKL
Sbjct: 509 SIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKL 568

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV 477
           +   GIK TPG S +E+   V++FV  D+SHP +  IY KLE +M      GY+ D S V
Sbjct: 569 MMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEV 628

Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
            +     E+  E +   HSEKLAIA+ L ++  G ++RIVKNLR            S AY
Sbjct: 629 FL--DLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRMCVDCHHMAKLVSEAY 686

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R+LIVRD+ R+HHFR G CSC ++W
Sbjct: 687 NRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 198/425 (46%), Gaps = 39/425 (9%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  + YA+ +F+ I  P    WN++I+ +++   P   +  Y  ML AS  +PD FTF F
Sbjct: 54  SGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLML-ASNIKPDRFTFPF 112

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            LK   R  AL   + L    ++ G++  + V    +  ++   +++ AR VFD     +
Sbjct: 113 LLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWE 172

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +V+WN ++S Y +     ++  L+  M    V  +  TLV +LS+C+ +  L  G  +++
Sbjct: 173 VVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYK 232

Query: 215 IACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
                G VE ++ + N L+DM+A CG +D A  VF  M+ RDV+SW S++ G+   G+ D
Sbjct: 233 Y-INGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQID 291

Query: 274 -------------------------------EAISFFKQMLMAGFHPDSITFLGLLCGCS 302
                                          EA++ F++M M+   PD  T + +L  C+
Sbjct: 292 LARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACA 351

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           H G +E G E+    + + ++K        L+D+Y + G + KA +V       D   W 
Sbjct: 352 HLGALELG-EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWT 410

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIK 419
            ++    I+ + E       N+++  + +  +   +  + ACT     E+G +    +  
Sbjct: 411 AMIVGLAINGHGEEALAMFSNMIE-ASITPDEITYIGVLCACTHAGMVEKGQSFFISMTM 469

Query: 420 SNGIK 424
            +GIK
Sbjct: 470 QHGIK 474



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 129/268 (48%), Gaps = 3/268 (1%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA--NGVIEAARSVFDNMPERDLVS 157
           E+ K++ + +++H   I+ G     +    ++    A  +G +  AR VFD +P+  L  
Sbjct: 15  EKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFI 74

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++I  Y++ +     + +Y  M   ++  D FT   LL       AL  G  L   A 
Sbjct: 75  WNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAV 134

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + GF  +++V  A + M++ C  +D A  VF      +V++WN M+ GY    +  ++  
Sbjct: 135 KHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKM 194

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M   G  P+S+T + +L  CS    +E G ++ +  ++   ++  +     L+D++
Sbjct: 195 LFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGG-KHIYKYINGGIVERNLILENVLIDMF 253

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLL 365
              G++++A  V +     D + W +++
Sbjct: 254 AACGEMDEAQSVFDNMKNRDVISWTSIV 281


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/576 (37%), Positives = 318/576 (55%), Gaps = 47/576 (8%)

Query: 20  EIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM 79
           EI    LL   A   S SL+YA+ +F++I  P T  WN++IR ++ S  P +A+  Y+HM
Sbjct: 50  EIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHM 109

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           L  S+   + +TF F LKAC  + A  + Q++H  +I+ G+   +  + +L+  Y+ +G 
Sbjct: 110 LYHSVPH-NAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGD 168

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQ-------------------------------A 168
           I++AR +FD + +RD VSWNS+I  YT+                               A
Sbjct: 169 IKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGA 228

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
               EAL L+ RM+   + LD   LV  L +CA +G L+ G ++H    +        +G
Sbjct: 229 GKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILG 288

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
             L+DMYAKCG+L+ A  VF +M ++ V  W +MI GY +HGRG EA+ +F +M  AG  
Sbjct: 289 CVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVE 348

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           P+ +TF G+L  CSH GLV E    F  M   +  KP I+HYGC+VDL GRAG L++A E
Sbjct: 349 PNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEE 408

Query: 349 VI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407
           +I N     +  +W  LL +C IH N+E+G+   K L+Q++    G Y+ LA+I+A   +
Sbjct: 409 LIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGE 468

Query: 408 EEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF 467
               AR R+ +K  G+   PG S I +    H+F+  D+SHP    I   LE+I+ R + 
Sbjct: 469 WNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLRE 528

Query: 468 IGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------ 521
            GY     L  +     +   E +  +HSEKLA+ FGL +T  G ++RIVKNLR      
Sbjct: 529 EGYKP--KLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCH 586

Query: 522 ------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                 S  Y+R++++RDR R+H F+DG C+CGDYW
Sbjct: 587 TVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 165/348 (47%), Gaps = 43/348 (12%)

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA--NGVIEAARSVFDNMPE 152
           TL   +R   + + +++HG ++++G     + ++ L+   A+  +G +  AR+VFD +  
Sbjct: 21  TLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
            +   WN++I  Y+ +    EAL LY  M +  V  + +T   LL +C+ + A      +
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQI 140

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV---- 268
           H    +MGF   +Y  N+L+++Y+K G++ SA  +F ++ +RD +SWNSMI GY      
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 269 ---------------------------HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
                                       G+  EA++ F +M  AG   D++  +  L  C
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260

Query: 302 SHQGLVEEGVEYFHMMVSRYNLK--PGIKHYGC-LVDLYGRAGKLEKALEVINTSSPSDP 358
           +  G++++G ++ H  + ++ ++  P +   GC L+D+Y + G LE+A+EV         
Sbjct: 261 ADLGVLDQG-KWIHAYIKKHEIEIDPIL---GCVLIDMYAKCGDLEEAIEVFRKMEEKGV 316

Query: 359 VLWRTLLGSCKIH-RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
            +W  ++    IH R  E  E  MK  +Q              + AC+
Sbjct: 317 SVWTAMISGYAIHGRGREALEWFMK--MQTAGVEPNQMTFTGILTACS 362


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/562 (39%), Positives = 317/562 (56%), Gaps = 52/562 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YAQ +FN I +P T  WN++IRA++ S  P  A   Y  ML +S+   +++TF F L+
Sbjct: 38  LLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPH-NSYTFPFLLR 96

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  + A+ +  ++HG VI+ G+   V     L+  YA  G I  AR +FDN+PERD VS
Sbjct: 97  ACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVS 156

Query: 158 WN-------------------------------SIISCYTQASFHLEALKLYERMRFEDV 186
           WN                               S+IS   +A   +EAL L   M+    
Sbjct: 157 WNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGF 216

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
            LDG  +  LL++CA++GAL+ G +LH      G      +G ALV+MY KCG+++ A  
Sbjct: 217 ELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALS 276

Query: 247 VFSRMR--KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
           VF +++  ++DV  W +MI G+ +HGRG EA+ +F +M   G  P+SITF  +L  CS+ 
Sbjct: 277 VFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYG 336

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWR 362
           GLVEEG E F  M   YN+ P I+HYGC+VDL GR+G+L++A E+I    P  P  V+W 
Sbjct: 337 GLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIK-KMPMKPSAVIWG 395

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
            LL +C IHR+  +G     +LV++++  +G Y+ LATI A     +  A  R  +KS G
Sbjct: 396 ALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLG 455

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFI-GYTKDESLVAVSG 481
           +  +PG S + +   VH+F+   + HP  + I  KL++I  R +   GY      + +  
Sbjct: 456 VPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDL 515

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
            + E   E + A HSEKLAIAFGL  T  GT++R++KNLR            S  YSR++
Sbjct: 516 ENEEK--ETAMAQHSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREI 573

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           I+RDRVR+HHFRDG CSC DYW
Sbjct: 574 IMRDRVRFHHFRDGSCSCKDYW 595



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 120/278 (43%), Gaps = 36/278 (12%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-----------PLQAIF 74
           LL+ YA+     +  A+ LF+ I      +WN +I  + +S             PL+ + 
Sbjct: 129 LLHVYALC--GEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVV 186

Query: 75  YYNHML---------MASLS----------RPDTFTFTFTLKACERVKALNKCQELHGFV 115
            +  ++         + +LS            D       L AC  + AL++ + LH +V
Sbjct: 187 SWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYV 246

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLE 173
           + +G +   V+   L+  Y   G +E A SVF  +   ++D+  W ++I  +      +E
Sbjct: 247 LNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVE 306

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR-IACEMGFVESVYVGNALV 232
           AL+ + RMR E +  +  T   +L +C++ G +  G  L + + C      S+     +V
Sbjct: 307 ALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMV 366

Query: 233 DMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVH 269
           D+  + G LD A  +  +M  K   + W +++    +H
Sbjct: 367 DLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIH 404



 Score = 38.9 bits (89), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 1/127 (0%)

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G+L  A  VF+ +   +   WN++I  Y      + A   ++QML +    +S TF  LL
Sbjct: 36  GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLL 95

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C +   + E ++  H +V +      +     L+ +Y   G++  A ++ +     D 
Sbjct: 96  RACRNLLAMGEALQ-VHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDA 154

Query: 359 VLWRTLL 365
           V W  ++
Sbjct: 155 VSWNIMI 161


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/541 (41%), Positives = 330/541 (60%), Gaps = 32/541 (5%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS---PLQAIFYYNHMLMASLSRPDTFTFTF 94
           L+YA  +F+Q+ NP +  WN LIRA AQS S     +AI  YN ML  S   PD  TF F
Sbjct: 72  LNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPF 131

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            LKAC  + AL + ++ H  +++ G++  V ++ +L+  YA+ G +E+A++VFD MP+R 
Sbjct: 132 VLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRS 191

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           LVSWN++I  +        AL+L+ + + +    DG+T+  ++++CA + AL++G++ H 
Sbjct: 192 LVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHA 251

Query: 215 IA---CEMGFV-ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
                C +    + V V N+L+DMY KCG+LD A  +F  M+K DV SWNSMI+G+ +HG
Sbjct: 252 FLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHG 311

Query: 271 RGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           +G+ A+  F++M+ ++ F P+SITF+G+L  C+H+ +V EG +YF MMV+ Y ++P ++H
Sbjct: 312 KGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEH 371

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGS-CKIHRNVEIGE-IAMKNLV 385
           YGCLVD+  RAG +++ALE++  S P  P  V+WR+LL S CK + +VE+ E IA + L 
Sbjct: 372 YGCLVDILARAGLIDEALELV-ASMPMKPDVVIWRSLLDSCCKKNASVELSENIARQILE 430

Query: 386 QLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDD 445
             EA S+G YVLL+ +YA       V   RKL+ +NGI   PG S IE+    H+F   D
Sbjct: 431 SEEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGD 490

Query: 446 KSHPDADMIYRKLEEIMHRAKFIGYTKDES---LVAVSGSSSEDFLEKSSAYHSEKLAIA 502
            SHP    IY+ L  +  R    GY  D S   +V    +S  D L      HSE+LAIA
Sbjct: 491 TSHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELNTSKRDSLR----LHSERLAIA 546

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
            GL     G  +RI KNLR            S  ++ ++IVRDRVR+HHF+DG CSC DY
Sbjct: 547 LGLLNLKPGMPIRIFKNLRVCDDCHKVTGLISEIFNVEIIVRDRVRFHHFKDGSCSCMDY 606

Query: 551 W 551
           W
Sbjct: 607 W 607



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)

Query: 1   MGLKKHA---RYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWN 57
           +G+  HA   R  G++ AR  H +    LL+ Y      SL  A  +F  +Q     +WN
Sbjct: 245 LGMWAHAFLLRNCGVSVARD-HVLVNNSLLDMYC--KCGSLDIATQIFEGMQKHDVTSWN 301

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
           S+I  FA       A+  +  M+  S   P++ TF   L AC     +N+ ++    ++ 
Sbjct: 302 SMILGFAMHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVN 361

Query: 118 S-GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER-DLVSWNSIIS--CYTQASFHL 172
               E  +     L+   A  G+I+ A  +  +MP + D+V W S++   C   AS  L
Sbjct: 362 EYKIEPQLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVEL 420


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/526 (38%), Positives = 310/526 (58%), Gaps = 26/526 (4%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+ +      +WN+L+  +AQ+  P +A+  Y  M  + L  PD FT    L AC R+K
Sbjct: 266 VFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLD-PDWFTIGSLLLACSRMK 324

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           +L+  +E+HGF +R+G      +  +L+  Y   G   AA+ +FD M  R LVSWN +I+
Sbjct: 325 SLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIA 384

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y+Q     EA+ L+ +M  + +      ++C+  +C+ + AL +G  LH  A +    E
Sbjct: 385 GYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTE 444

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            ++V ++++DMYAK G +  +  +F R+R++DV SWN +I GYG+HGRG EA+  F++ML
Sbjct: 445 DIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKML 504

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  PD  TF G+L  CSH GLVE+G+EYF+ M++ +N++P ++HY C+VD+ GRAG++
Sbjct: 505 RLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRI 564

Query: 344 EKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           + AL +I    P DP   +W +LL SC+IH N+ +GE     L++LE     +YVL++ +
Sbjct: 565 DDALRLIE-EMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNL 623

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           +A +   + V R R  +K  G++   G SWIE+G +VH F++ D+  P+ + +      +
Sbjct: 624 FAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRL 683

Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA----YHSEKLAIAFGLATTPDGTSLRIV 517
             +   IGYT D      +GS   D  E+        HSEKLAI+FGL  T  G  +R+ 
Sbjct: 684 EVKISSIGYTPD------TGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVY 737

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S   +RD++VRD  R+HHFRDG+CSCGDYW
Sbjct: 738 KNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 189/387 (48%), Gaps = 8/387 (2%)

Query: 24  EWLLNSYAISVSS---SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           +++LN+  I++ S   S S ++++F++++      WN+++ A+ ++     A+  ++ ++
Sbjct: 140 DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 199

Query: 81  MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
             +  +PD FT    +KAC  +  L   Q +HG   +      V V   L+  Y   G++
Sbjct: 200 SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 259

Query: 141 E-AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           E A + VFD M  + + SWN+++  Y Q S   +AL LY +M    +  D FT+  LL +
Sbjct: 260 EEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLA 319

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           C+ + +L+ G  +H  A   G     ++G +L+ +Y  CG   +A  +F  M  R ++SW
Sbjct: 320 CSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSW 379

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           N MI GY  +G  DEAI+ F+QML  G  P  I  + +   CS    +  G E  H    
Sbjct: 380 NVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKE-LHCFAL 438

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGE 378
           + +L   I     ++D+Y + G +  +  + +     D   W  ++    IH R  E  E
Sbjct: 439 KAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALE 498

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACT 405
           +  + +++L      D+     + AC+
Sbjct: 499 L-FEKMLRL-GLKPDDFTFTGILMACS 523



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 103/204 (50%), Gaps = 17/204 (8%)

Query: 173 EALKLYERMRFEDVGLDGF----TLVCLLSSCAHVGALNMGIFLHR-IACEMGFVESVYV 227
           EAL   +R   +DV LD       +  LL +C     + +G  LH  ++    F     +
Sbjct: 85  EALDFLQR-ESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVL 143

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
              ++ MY+ CG+   +  VF ++R++++  WN+++  Y  +   ++A+S F +++    
Sbjct: 144 NTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTE 203

Query: 288 H-PDSITFLGLLCGCSHQGLVEEGV-EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
           H PD+ T   ++  C+  GL++ G+ +  H M ++ +L   +     L+ +YG+ G +E+
Sbjct: 204 HKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEE 261

Query: 346 AL----EVINTSSPSDPVLWRTLL 365
           A+    ++++T + S    W  LL
Sbjct: 262 AVKRVFDLMDTKTVSS---WNALL 282


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/563 (38%), Positives = 317/563 (56%), Gaps = 44/563 (7%)

Query: 14  KARQAHEIHGEWLLNSYAIS----------VSSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           K  QA+ I   +  N+  I+            +S+ +A  LF+QI  P    +N++ R +
Sbjct: 43  KQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQITQPNIVLFNTMARGY 102

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           A+   PL+ I +                F   L+   +VKAL + ++LH F ++ G    
Sbjct: 103 ARLNDPLRMITH----------------FRRCLRLVSKVKALAEGKQLHCFAVKLGVSDN 146

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           + V   L+  Y A G I+A+R VFD + E  +V++N+II    + +   EAL L+  +  
Sbjct: 147 MYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFREL-- 204

Query: 184 EDVGLD--GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           +++GL     T++ +LSSCA +G+L++G ++H    + GF   V V   L+DMYAKCG+L
Sbjct: 205 QEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSL 264

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           D A  VF  M KRD  +W+++IV Y  HG G +AIS   +M      PD ITFLG+L  C
Sbjct: 265 DDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYAC 324

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVL 360
           SH GLVEEG EYFH M + Y + P IKHYGC+VDL GRAG+L++A + I+       P+L
Sbjct: 325 SHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPIL 384

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           WRTLL +C  H NVE+G+  ++ + +L+ +  GDYV+ + + A     + V   RK +  
Sbjct: 385 WRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMID 444

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
            G    PG S IE+ N VH+F   +  H  +  ++R L+E++   K  GY  D SLV  +
Sbjct: 445 KGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYA 504

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
               E+  E    YHSEKLAI FGL  TP GT++R+VKNLR            S+ + R 
Sbjct: 505 DMEDEE-KEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQ 563

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +I+RD  R+HHF+DG CSCGDYW
Sbjct: 564 IILRDVQRFHHFKDGKCSCGDYW 586


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/511 (39%), Positives = 307/511 (60%), Gaps = 22/511 (4%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WN++IR +++S +P +AI  Y  M+   ++ P+ FTF F L +C R+ +L    E+H  +
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
           I+ G+E  + V   L+  Y+  G +  AR++FD    RDLVS+N++I  Y + +    AL
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG-FVESVYVGNALVDM 234
            L+  M+      D  TLV +LS+CA +GA ++G  L+    E G F ++  +  A++DM
Sbjct: 122 CLFGEMQ----NSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 177

Query: 235 YAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           YAKCG++DSA  +F R+ K  +    +NSMI G   HG G+ AI+ F++++  G  PD +
Sbjct: 178 YAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEV 237

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TF+G+LC C H GL+EEG + F  M + Y +KP ++HYGC+VDL GR G LE+A +++  
Sbjct: 238 TFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQK 297

Query: 353 SS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
               ++ V+WR LL +C+ H NV+IGEIA + L+++EA     YVLL+ I A     E  
Sbjct: 298 MPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEA 357

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
            + RK+++ +GI+  PGWS+IE+G  +H+FV  DKSHP    I   L+++  R K  GY 
Sbjct: 358 RQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYV 417

Query: 472 KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIA------- 524
            + + V       E   E   +YHSEKLA+AFGL       ++RIVKNLR  A       
Sbjct: 418 PNTAQVMFDIDEEEK--ESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFK 475

Query: 525 -----YSRDLIVRDRVRYHHFRDGLCSCGDY 550
                Y R++ VRD +R+HHFR+G CSC D+
Sbjct: 476 LVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/608 (37%), Positives = 335/608 (55%), Gaps = 89/608 (14%)

Query: 26  LLNSYA-ISVSSSLSYAQLL--FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           L+ SYA +S +  LS+   L  F+ ++ P    WN +I+   ++  P +AI  Y  M++A
Sbjct: 73  LVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVA 132

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG-----------------YERCV- 124
             SRP+ +T+   LKAC     + +  ++H  +++ G                 + R V 
Sbjct: 133 H-SRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVE 191

Query: 125 --------------VVSTNLMRGYAANGVIEAARSVFDNMP------------------- 151
                         V    ++ GY   G +EAAR +F+ MP                   
Sbjct: 192 ARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCG 251

Query: 152 -------------ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
                        ERD +SW+++I  Y Q    +EAL+++ +M+ E +    F L  +LS
Sbjct: 252 MVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLS 311

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +CA++GAL+ G ++H  A          +G +LVDMYAKCG +D A+ VF +M  ++V S
Sbjct: 312 ACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSS 371

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WN+MI G  +HGR ++AI  F +M     +P+ ITF+G+L  C+H GLV++G+  F+ M 
Sbjct: 372 WNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMR 428

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEI 376
             Y ++P I+HYGC+VDL GRAG L +A +V+ +S P++P   +W  LLG+C+ H NVE+
Sbjct: 429 KEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVV-SSIPTEPTPAVWGALLGACRKHGNVEL 487

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIG- 435
           GE   K L++LE  ++G Y LL+ IYA     E V   RKL+K  GIKTTPG S I++G 
Sbjct: 488 GERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGR 547

Query: 436 NQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYH 495
            +VHKF++ D SHP    IY+ L+++  R +  GY  D S V       E   E +   H
Sbjct: 548 GEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEK--ETAVWQH 605

Query: 496 SEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDG 543
           SEKLAI FGL  T  GT++RIVKNLR            S  Y+R++IVRDR+RYHHFR+G
Sbjct: 606 SEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNG 665

Query: 544 LCSCGDYW 551
            CSC D+W
Sbjct: 666 ACSCKDFW 673



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 136/301 (45%), Gaps = 24/301 (7%)

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFT----FTLKACERVKALNKCQELHGFVIRSG 119
           + + +  +A ++++H L+      +T   +      L   +   +L+  ++ H  ++R+G
Sbjct: 3   STATTATEAPYHHHHHLIPKGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTG 62

Query: 120 YERCVVVSTNLMRGYAANGV-----IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           + +   ++ +L++ YA          E++  VFD + + ++  WN +I    + +   +A
Sbjct: 63  HLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKA 122

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           + LY  M       + +T   +L +C+  G +  G+ +H    + G     ++ ++ + M
Sbjct: 123 ILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRM 182

Query: 235 YAKCGNLDSAFCVF-SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS-- 291
           YA  G L  A  +   +  + D + WN+MI GY   G  + A   F+ M      PD   
Sbjct: 183 YASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM------PDRSM 236

Query: 292 -ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
             T+  ++ G S  G+VE   E+F  M  R  +      +  ++D Y + G   +ALE+ 
Sbjct: 237 ISTWNAMISGFSRCGMVEVAREFFDEMKERDEIS-----WSAMIDGYIQEGCFMEALEIF 291

Query: 351 N 351
           +
Sbjct: 292 H 292


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/568 (38%), Positives = 329/568 (57%), Gaps = 32/568 (5%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVSSSLS----------YAQLLFNQIQNPQTQAWNSLIR 61
           L   +Q H I  +  L+S  +SV++SL           +A+ +FN +++    +WNS+I 
Sbjct: 302 LELGKQVHGIAVKSGLDS-DVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS 360

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTF-TFTL----KACERVKALNKCQELHGFVI 116
           + AQS    +++  +  +L   L +PD FT  + TL    KAC  +  L++ +++H   I
Sbjct: 361 SCAQSSLEEESVNLFIDLLHEGL-KPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAI 419

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
           ++G++  + V++ ++  Y   G +  A  VF+ +   D V+W S+IS         +AL+
Sbjct: 420 KAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALR 479

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           +Y RMR   V  D +T   L+ + + V AL  G  LH    ++  V   +VG +LVDMYA
Sbjct: 480 IYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYA 539

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           KCGN++ A+ +F +M  R++  WN+M+VG   HG  +EA++ FK M   G  PD ++F+G
Sbjct: 540 KCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIG 599

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-P 355
           +L  CSH GL  E  EY H M + Y ++P I+HY CLVD  GRAG +++A +VI T    
Sbjct: 600 ILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFK 659

Query: 356 SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415
           +   + R LLG+C+I  +VE G+     L  LE   +  YVLL+ IYA     + V   R
Sbjct: 660 ASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDAR 719

Query: 416 KLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES 475
           K++K   +K  PG+SWI++ N +H FVVDD+SHP AD+IY K+EE+M   +  GY  D  
Sbjct: 720 KMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTE 779

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
            V +     E   E+S  YHSEKLAIA+GL +TP  T++R++KNLR            S 
Sbjct: 780 FVLLDVEDEEK--ERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISK 837

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + R++++RD  R+HHFRDG+CSCGDYW
Sbjct: 838 VFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 160/345 (46%), Gaps = 16/345 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSP----LQAIFYYNHMLMASLSRPDTFTF 92
           SLS A+ +F+         WN+++ A+A S+       Q   +   +L ASL      T 
Sbjct: 127 SLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTL 186

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              LK C     L   + +HG+ I+ G E  V VS  L+  Y+  G +  AR +FD M E
Sbjct: 187 APVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRE 246

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA--LNMGI 210
           RD+V WN ++  Y Q     EA +L+       +  D F++  +L+ C   G   L +G 
Sbjct: 247 RDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGK 306

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H IA + G    V V N+LV+MY+K G    A  VF+ M+  D++SWNSMI       
Sbjct: 307 QVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSS 366

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLL-------CGCSHQGLVEEGVEYFHMMVSRYNL 323
             +E+++ F  +L  G  PD  T   +        CGC    L+++G +  H    +   
Sbjct: 367 LEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGC--LVLLDQGKQ-IHAHAIKAGF 423

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
              +     ++D+Y + G +  A  V N  S  D V W +++  C
Sbjct: 424 DSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGC 468



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 129/270 (47%), Gaps = 8/270 (2%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L KC   H  ++ SG      +S NL+  Y+  G + +AR VFD  PERDLV+WN+I+  
Sbjct: 95  LGKCT--HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGA 152

Query: 165 YTQA-----SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           Y  +         E L L+  +R         TL  +L  C + G L     +H  A ++
Sbjct: 153 YAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKI 212

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G    V+V  ALV++Y+KCG +  A  +F  MR+RDV+ WN M+ GY   G   EA   F
Sbjct: 213 GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLF 272

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVE-EGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
            +   +G  PD  +   +L GC   G  + E  +  H +  +  L   +     LV++Y 
Sbjct: 273 SEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYS 332

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
           + G    A EV N     D + W +++ SC
Sbjct: 333 KMGCAYFAREVFNDMKHLDLISWNSMISSC 362


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/585 (36%), Positives = 321/585 (54%), Gaps = 61/585 (10%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL   A+S    L YA+ +F  +  P   ++N+LIRA ++S  P  A+  +  M+     
Sbjct: 49  LLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSV 108

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR------------- 132
            P+ FTF    KAC R + L + +++HG  ++ G +    V +N++R             
Sbjct: 109 EPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHR 168

Query: 133 ---------------------------------GYAANGVIEAARSVFDNMPERDLVSWN 159
                                            GY   G +E AR++FD MP+R +VSWN
Sbjct: 169 LFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWN 228

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
            +I+ Y Q+    EA++++  M+  +V  +  TLV +L + + +GAL +G ++H  A   
Sbjct: 229 VMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRN 288

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
                  +G+AL+DMYAKCG+++ A  VF  + KR+V++W+++I G  +HGR  + +  F
Sbjct: 289 NIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHF 348

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           + M  AG  P  +T++GLL  CSH GLV EG  +F  MV    L+P I+HYGC+VDL GR
Sbjct: 349 EDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGR 408

Query: 340 AG-KLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           AG   E    ++N     D V+W+ LLG+CK+H NVE+G+   ++L++L    +G YV L
Sbjct: 409 AGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVAL 468

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + IYA   + EGVA+ R ++K   ++  PG SWIE+   +H+F+V+D SHP +  I+  L
Sbjct: 469 SNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSML 528

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           +E+      +GY  + + V    +  E+  E S  YHSEK+AIAFGL +T   T LRI K
Sbjct: 529 QEMSRNLILVGYRPNTTQVLT--NMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITK 586

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S  Y R +IVRDR R+HHF +G CSC DYW
Sbjct: 587 NLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/530 (40%), Positives = 313/530 (59%), Gaps = 22/530 (4%)

Query: 39  SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           SY+Q  F Q+ +P    +N++IRA + S SP + +  Y  M    ++  D  + +F +K+
Sbjct: 55  SYSQRFFGQLSHPLVSHYNTMIRACSMSDSPQKGLLLYRDMRRRGIA-ADPLSSSFAVKS 113

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
           C R   L    ++H  + + G++   ++ T +M  Y+       A  VFD MP RD V+W
Sbjct: 114 CIRFLYLPGGVQVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAW 173

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           N +ISC  + +   +AL L++ M+        D  T + LL +CAH+ AL  G  +H   
Sbjct: 174 NVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYI 233

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            E G+ +++ + N+L+ MY++CG LD A+ VF  M  ++V+SW++MI G  ++G G EAI
Sbjct: 234 MERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAI 293

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F++ML  G  PD  TF G+L  CS+ G+V+EG+ +FH M   + + P + HYGC+VDL
Sbjct: 294 EAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDL 353

Query: 337 YGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GRAG L+KA ++I +     D  +WRTLLG+C+IH +V +GE  + +L++L+A  AGDY
Sbjct: 354 LGRAGLLDKAYQLIMSMVVKPDSTMWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDY 413

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL  IY+     E VA  RKL+K+  I+TTPG S IE+   VH+FVVDD SH     IY
Sbjct: 414 VLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIY 473

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSS--AYHSEKLAIAFGLATTPDGTS 513
             L+EI H+ +  GY  + S    S     D  EK    ++HSEKLA+AFG+  TP GT 
Sbjct: 474 ETLDEINHQLRIAGYVVELS----SELHKMDDKEKGYVLSHHSEKLAVAFGVLATPPGTI 529

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR+  NLR            S  Y+RD+++RD  R+HHFR G CSC DYW
Sbjct: 530 LRVASNLRVCVDCHNFLKLFSGVYNRDVVLRDHNRFHHFRGGRCSCSDYW 579


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/608 (37%), Positives = 334/608 (54%), Gaps = 89/608 (14%)

Query: 26  LLNSYA-ISVSSSLSYAQLL--FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           L+ SYA +S +  LS+   L  F+ ++ P    WN +I+   ++  P +AI  Y  M++A
Sbjct: 72  LVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVA 131

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG-----------------YERCV- 124
              RP+ +T+   LKAC     + +  ++H  +++ G                 + R V 
Sbjct: 132 HF-RPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVE 190

Query: 125 --------------VVSTNLMRGYAANGVIEAARSVFDNMP------------------- 151
                         V    ++ GY   G +EAAR +F+ MP                   
Sbjct: 191 ARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCG 250

Query: 152 -------------ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
                        ERD +SW+++I  Y Q    +EAL+++ +M+ E +    F L  +LS
Sbjct: 251 MVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLS 310

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +CA++GAL+ G ++H  A          +G +LVDMYAKCG +D A+ VF +M  ++V S
Sbjct: 311 ACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSS 370

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WN+MI G  +HGR ++AI  F +M     +P+ ITF+G+L  C+H GLV++G+  F+ M 
Sbjct: 371 WNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMR 427

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEI 376
             Y ++P I+HYGC+VDL GRAG L +A +V+ +S P++P   +W  LLG+C+ H NVE+
Sbjct: 428 KEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVV-SSIPTEPTPAVWGALLGACRKHGNVEL 486

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIG- 435
           GE   K L++LE  ++G Y LL+ IYA     E V   RKL+K  GIKTTPG S I++G 
Sbjct: 487 GERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGR 546

Query: 436 NQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYH 495
            +VHKF++ D SHP    IY+ L+++  R +  GY  D S V       E   E +   H
Sbjct: 547 GEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEK--ETAVWQH 604

Query: 496 SEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDG 543
           SEKLAI FGL  T  GT++RIVKNLR            S  Y+R++IVRDR+RYHHFR+G
Sbjct: 605 SEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNG 664

Query: 544 LCSCGDYW 551
            CSC D+W
Sbjct: 665 ACSCKDFW 672



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 131/290 (45%), Gaps = 24/290 (8%)

Query: 75  YYNHMLMASLSRPDTFTFT----FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130
           Y++H L+ +    +T   +      L   +   +L+  ++ H  ++R+G+ +   ++ +L
Sbjct: 13  YHHHHLIPNGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSL 72

Query: 131 MRGYAANGV-----IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           ++ YA          E++  VFD + + ++  WN +I    + +   +A+ LY  M    
Sbjct: 73  VKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAH 132

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
              + +T   +L +C+  G +  G+ +H    + G     ++ ++ + MYA  G L  A 
Sbjct: 133 FRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEAR 192

Query: 246 CVF-SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS---ITFLGLLCGC 301
            +   +  + D + WN+MI GY   G  + A   F+ M      PD     T+  ++ G 
Sbjct: 193 RILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM------PDRSMISTWNAMISGF 246

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
           S  G+VE   E+F  M  R  +      +  ++D Y + G   +ALE+ +
Sbjct: 247 SRCGMVEVAREFFDEMKERDEIS-----WSAMIDGYIQEGCFMEALEIFH 291


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/525 (37%), Positives = 310/525 (59%), Gaps = 18/525 (3%)

Query: 42  QLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101
           Q +F+++      +WNS+I+A+  +  PL+AI  +  M ++ + +PD  T         +
Sbjct: 302 QKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRI-QPDCLTLISLASILSQ 360

Query: 102 VKALNKCQELHGFVIRSG-YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +  +  C+ + GF +R G +   + +   ++  YA  G++++AR+VF+ +P  D++SWN+
Sbjct: 361 LGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNT 420

Query: 161 IISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           IIS Y Q  F  EA+++Y  M  E ++  +  T V +L +C+  GAL  G+ LH    + 
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 480

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G    V+V  +L DMY KCG L+ A  +F ++ + + + WN++I  +G HG G++A+  F
Sbjct: 481 GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLF 540

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           K+ML  G  PD ITF+ LL  CSH GLV+EG   F MM + Y + P +KHYGC+VD+YGR
Sbjct: 541 KEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGR 600

Query: 340 AGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           AG+LE AL+ I + S   D  +W  LL +C++H NV++G+IA ++L ++E    G +VLL
Sbjct: 601 AGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLL 660

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + +YA     EGV   R +    G++ TPGWS +E+ N+V  F   +++HP  + +YR+L
Sbjct: 661 SNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYREL 720

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
             +  + K IGY  D   V       +D  E     HSE+LAIAF L  TP  T++RI K
Sbjct: 721 TALQAKLKMIGYVPDHRFVL--QDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFK 778

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S    R++IVRD  R+HHF++G+CSCGDYW
Sbjct: 779 NLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 201/398 (50%), Gaps = 27/398 (6%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +++ A+  F+ IQN    AWN +I  + ++ +  + I  ++  +++S   PD  TF   L
Sbjct: 101 NVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVL 160

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           KAC  V   NK   +H   ++ G+   V V+ +L+  Y+    +  AR +FD MP RD+ 
Sbjct: 161 KACRTVIDGNK---IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMG 217

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++IS Y Q+    EAL L   +R     +D  T+V LLS+C   G  N G+ +H  +
Sbjct: 218 SWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYS 273

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + G    ++V N L+D+YA+ G L     VF RM  RD++SWNS+I  Y ++ +   AI
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-----IKHYG 331
           S F++M ++   PD +T + L    S  G +          V  + L+ G     I    
Sbjct: 334 SLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRS-----VQGFTLRKGWFLEDITIGN 388

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE--- 388
            +V +Y + G ++ A  V N    +D + W T++ S           I M N+++ E   
Sbjct: 389 AVVVMYAKLGLVDSARAVFNWLPNTDVISWNTII-SGYAQNGFASEAIEMYNIMEEEGEI 447

Query: 389 AASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGI 423
           AA+ G +V  + + AC++     +G+    +L+K NG+
Sbjct: 448 AANQGTWV--SVLPACSQAGALRQGMKLHGRLLK-NGL 482



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 146/313 (46%), Gaps = 18/313 (5%)

Query: 54  QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
           Q+  S+IR F+ S + LQ  +   +    S    D  T     + C  +++  KC  LH 
Sbjct: 25  QSIGSVIREFSASANALQDCWKNGN---ESKEIDDVHTL---FRYCTNLQSA-KC--LHA 75

Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
            ++ S   + V +S  L+  Y   G +  AR  FD++  RD+ +WN +IS Y +A    E
Sbjct: 76  RLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSE 135

Query: 174 ALKLYER-MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
            ++ +   M    +  D  T   +L +C  V   N    +H +A + GF+  VYV  +L+
Sbjct: 136 VIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNK---IHCLALKFGFMWDVYVAASLI 192

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
            +Y++   + +A  +F  M  RD+ SWN+MI GY   G   EA++    +       DS+
Sbjct: 193 HLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSV 248

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           T + LL  C+  G    GV   H    ++ L+  +     L+DLY   G+L    +V + 
Sbjct: 249 TVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDR 307

Query: 353 SSPSDPVLWRTLL 365
               D + W +++
Sbjct: 308 MYVRDLISWNSII 320



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 6/150 (4%)

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
           +++V +   LV++Y   GN+  A   F  ++ RDV +WN MI GYG  G   E I  F  
Sbjct: 83  IQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSL 142

Query: 282 -MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            ML +G  PD  TF  +L  C     V +G    H +  ++     +     L+ LY R 
Sbjct: 143 FMLSSGLTPDYRTFPSVLKACR---TVIDG-NKIHCLALKFGFMWDVYVAASLIHLYSRY 198

Query: 341 GKLEKALEVINTSSPSDPVLWRTLL-GSCK 369
             +  A  + +     D   W  ++ G C+
Sbjct: 199 KAVGNARILFDEMPVRDMGSWNAMISGYCQ 228


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/535 (37%), Positives = 314/535 (58%), Gaps = 19/535 (3%)

Query: 32  ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT 91
           +  + S++YA+ LF  + NP +  ++SL++  ++    +  + +Y  ML +   + + +T
Sbjct: 133 VCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSN-YT 191

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           FT  +KAC  + AL   +E+H  V+  GY   + V   L+  YA    ++ A+ VFD MP
Sbjct: 192 FTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMP 251

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           +R +++WNS+IS Y Q     E++ L+  M       D  T+V LLSSC+ +GAL+ G +
Sbjct: 252 QRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCW 311

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           LH  A   GF  +V +G +L++MY +CGN+  A  VF  M++R+V++W +MI GYG+HG 
Sbjct: 312 LHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGY 371

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           G +A+  F +M   G  P++ITF+ +L  C+H GL+++G   F  M   Y L PG++H  
Sbjct: 372 GRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNV 431

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSD--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
           C+VD++GRAG L  A + I    P +  P +W ++LG+C++HRN ++G    ++++ +E 
Sbjct: 432 CMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEP 491

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
            + G YV+L+ IYA     + V   R ++    +K   G+S IEI  + + F + DKSHP
Sbjct: 492 ENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHP 551

Query: 450 DADMIYRKLEEIMHRAKFIGYTK-DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
             + IYR L+E+M R    GY    ESL+        D+  +   YHSEKLA+AFGL  T
Sbjct: 552 QTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALR---YHSEKLALAFGLLKT 608

Query: 509 PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             G ++RIVKNLR            SI   R++IVRD+ R+HHF+DG CSC DYW
Sbjct: 609 NQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 143/302 (47%), Gaps = 6/302 (1%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L   Q++H  +I SG  R   + T L+      G I  AR +F  +P  D   ++S++  
Sbjct: 104 LRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKV 163

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
            ++  F ++ +  Y RM F       +T   ++ +CA + AL +G  +H      G+   
Sbjct: 164 TSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSD 223

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           +YV  AL+ +YAK  ++  A  VF  M +R +++WNS+I GY  +G   E+I  F  M+ 
Sbjct: 224 MYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMME 283

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
           +GF PDS T + LL  CS  G ++ G  + H           +     L+++Y R G + 
Sbjct: 284 SGFQPDSATIVSLLSSCSQLGALDFGC-WLHDYADGNGFDLNVVLGTSLINMYTRCGNVS 342

Query: 345 KALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA--ASAGDYVLLATIY 402
           KA EV ++    + V W  ++    +H     G  AM+   ++ A      +   +A + 
Sbjct: 343 KAREVFDSMKERNVVTWTAMISGYGMH---GYGRQAMELFTEMRAYGPRPNNITFVAVLS 399

Query: 403 AC 404
           AC
Sbjct: 400 AC 401


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/535 (37%), Positives = 314/535 (58%), Gaps = 19/535 (3%)

Query: 32  ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT 91
           +  + S++YA+ LF  + NP +  ++SL++  ++    +  + +Y  ML +   + + +T
Sbjct: 69  VCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSN-YT 127

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           FT  +KAC  + AL   +E+H  V+  GY   + V   L+  YA    ++ A+ VFD MP
Sbjct: 128 FTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMP 187

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           +R +++WNS+IS Y Q     E++ L+  M       D  T+V LLSSC+ +GAL+ G +
Sbjct: 188 QRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCW 247

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           LH  A   GF  +V +G +L++MY +CGN+  A  VF  M++R+V++W +MI GYG+HG 
Sbjct: 248 LHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGY 307

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           G +A+  F +M   G  P++ITF+ +L  C+H GL+++G   F  M   Y L PG++H  
Sbjct: 308 GRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNV 367

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSD--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
           C+VD++GRAG L  A + I    P +  P +W ++LG+C++HRN ++G    ++++ +E 
Sbjct: 368 CMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEP 427

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
            + G YV+L+ IYA     + V   R ++    +K   G+S IEI  + + F + DKSHP
Sbjct: 428 ENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHP 487

Query: 450 DADMIYRKLEEIMHRAKFIGYTK-DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
             + IYR L+E+M R    GY    ESL+        D+  +   YHSEKLA+AFGL  T
Sbjct: 488 QTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALR---YHSEKLALAFGLLKT 544

Query: 509 PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             G ++RIVKNLR            SI   R++IVRD+ R+HHF+DG CSC DYW
Sbjct: 545 NQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 143/302 (47%), Gaps = 6/302 (1%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L   Q++H  +I SG  R   + T L+      G I  AR +F  +P  D   ++S++  
Sbjct: 40  LRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKV 99

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
            ++  F ++ +  Y RM F       +T   ++ +CA + AL +G  +H      G+   
Sbjct: 100 TSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSD 159

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           +YV  AL+ +YAK  ++  A  VF  M +R +++WNS+I GY  +G   E+I  F  M+ 
Sbjct: 160 MYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMME 219

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
           +GF PDS T + LL  CS  G ++ G  + H           +     L+++Y R G + 
Sbjct: 220 SGFQPDSATIVSLLSSCSQLGALDFGC-WLHDYADGNGFDLNVVLGTSLINMYTRCGNVS 278

Query: 345 KALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA--ASAGDYVLLATIY 402
           KA EV ++    + V W  ++    +H     G  AM+   ++ A      +   +A + 
Sbjct: 279 KAREVFDSMKERNVVTWTAMISGYGMH---GYGRQAMELFTEMRAYGPRPNNITFVAVLS 335

Query: 403 AC 404
           AC
Sbjct: 336 AC 337


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/554 (37%), Positives = 321/554 (57%), Gaps = 49/554 (8%)

Query: 44  LFNQ-IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
           LFN+ +      +WNS+I   A+S   ++A+  ++ M   SL +P+  TF   +K+C  +
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSL-KPNRSTFPCAIKSCSAL 89

Query: 103 KALNKCQELHGFVIRSGYE-------------------------------RCVVVSTNLM 131
             L+  ++ H   +  G+E                               R +V  T+++
Sbjct: 90  LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 149

Query: 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDG 190
            GY  N     A  VFD M ERD++SWNSII+ Y Q     E+++++ RM +  ++  + 
Sbjct: 150 TGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNA 209

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
            TL  +L +CAH G+  +G  +H    +MG   +V+VG +++DMY KCG ++ A   F R
Sbjct: 210 VTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDR 269

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           MR+++V SW++M+ GYG+HG   EA+  F +M MAG  P+ ITF+ +L  CSH GL+EEG
Sbjct: 270 MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCK 369
             +F  M   ++++PG++HYGC+VDL GRAG L++A ++I       D V+W  LLG+C+
Sbjct: 330 WHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACR 389

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           +H+NV++GEI+ + L +L+  + G YVLL+ IYA     E V R R L+K++G+   PG+
Sbjct: 390 MHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGF 449

Query: 430 SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
           S ++I  +VH F+V D+ HP  + IY  LE++  + + +GY  D  + +V      +  E
Sbjct: 450 SLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPD--MTSVLHDVGHEEKE 507

Query: 490 KSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRY 537
                HSEKLA+AFG+  T  GT++ I+KNLR            S    R+++VRD  R+
Sbjct: 508 MVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRF 567

Query: 538 HHFRDGLCSCGDYW 551
           HHFRDGLCSCGDYW
Sbjct: 568 HHFRDGLCSCGDYW 581



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y+   NL + F  +  + K +V SWNS+I      G   EA+  F  M      P+  TF
Sbjct: 22  YSNNPNLTTLFNKY--VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTF 79

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
              +  CS    +  G +  H     +  +P +     LVD+Y + G+L  A  + +  S
Sbjct: 80  PCAIKSCSALLDLHSGRQA-HQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEIS 138

Query: 355 PSDPVLWRTLL 365
             + V W +++
Sbjct: 139 HRNIVSWTSMI 149


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/536 (39%), Positives = 311/536 (58%), Gaps = 20/536 (3%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP-DTFTF 92
           +   ++Y+  +F+Q  NP     N++IRAF+ S +P +  F     L  ++S P +  + 
Sbjct: 58  IPRDINYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEG-FRLFRALRRNISFPANPLSS 116

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
           +F LK C +   L    ++HG +   G+    ++ T LM  Y+       A  VFD +P+
Sbjct: 117 SFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQ 176

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFED---VGLDGFTLVCLLSSCAHVGALNMG 209
           RD VSWN +ISCY +     + L L+++M+ +    V  D  T +  L +CA++GAL+ G
Sbjct: 177 RDTVSWNVLISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFG 236

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H    E G   ++ + N LV MY++CG++D A+ VF+RMR+R+V+SW +MI G  ++
Sbjct: 237 KQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMN 296

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS-RYNLKPGIK 328
           G G EAI  F +ML  G  P+  T  GLL  CSH GLV+EG+ +F  M S  + +KP + 
Sbjct: 297 GFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLH 356

Query: 329 HYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
           HYGC+VDL GRA  L+KA  +I +     D  +WRTLLG+C++H NVE+GE  + +L++ 
Sbjct: 357 HYGCIVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEF 416

Query: 388 EAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKS 447
           +A  AGDYVLL   Y+     E V   R L+K   I+T PG S IE+   VH+F+VDD S
Sbjct: 417 KAEEAGDYVLLLNTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVS 476

Query: 448 HPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLAT 507
           HP  + IY+ L EI  + K  GY   E    +    SE+    +  YHSEKLAIAFG+  
Sbjct: 477 HPRKEEIYKMLAEINQQLKIAGYVA-EITSELHNLDSEEEKGYALRYHSEKLAIAFGILV 535

Query: 508 TPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           TP  T++R+ KNLR            S  Y R +IVRDR R+HHF+ G CSC D+W
Sbjct: 536 TPPETTIRVTKNLRTCVDCHNFAKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/596 (37%), Positives = 335/596 (56%), Gaps = 63/596 (10%)

Query: 16  RQAHEIHGEWLLN--------------SYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           R+  +IH + L+N              S A++  ++L Y+  + +  QNP    +NS+IR
Sbjct: 23  RELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFTFNSMIR 82

Query: 62  AFAQSLSPLQAIFYYNHML-MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
           A ++S +P ++  +Y+ +L  A    PD +TFTF ++   ++ A      +HG  ++ G+
Sbjct: 83  AHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYGF 142

Query: 121 ERCVVVSTNLMRGYAANGVIEA-------------------------------ARSVFDN 149
           E    V + L+  YA  G ++A                               AR +FD 
Sbjct: 143 EYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDK 202

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           M  +D ++WN++IS Y Q     EAL L+  M+ E V ++  ++V +LS+C+H+GAL+ G
Sbjct: 203 MSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQG 262

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
            + H          ++ +G AL+DMYAKCGN++ A  VF  M++++V +W+S I G  ++
Sbjct: 263 RWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMN 322

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G G++ +  F  M      P+ ITF+ +L GCS  GLVEEG ++F  M   Y ++P ++H
Sbjct: 323 GAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEH 382

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVL--WRTLLGSCKIHRNVEIGEIAMKNLVQL 387
           YGC+VDLYGRAG L++AL  IN S P  P +  W  LL +CKI+RN+E+GE+A + +V+L
Sbjct: 383 YGCMVDLYGRAGHLDEALNFIN-SMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVEL 441

Query: 388 EAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKS 447
           EA + G YVLL+ IYA +KD + V+  R+ +   G++  PG S IE+G +VH+F V DKS
Sbjct: 442 EAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKS 501

Query: 448 HPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLAT 507
           HP    I   L EI  R K  GY  + + V       E   E +   HSEK+AIAFGL +
Sbjct: 502 HPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEK--EDALCMHSEKIAIAFGLIS 559

Query: 508 TPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                 +RIVKNLR            S A++R+++VRDR R+HHFRDG CSC  YW
Sbjct: 560 LSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/529 (39%), Positives = 315/529 (59%), Gaps = 20/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F+ I +    +W ++I  +       +AI  +  +L  +L+ PD+FT    L 
Sbjct: 163 LEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLA-PDSFTIVRVLS 221

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC ++  LN  + +H  ++  G  R V V T+L+  YA  G +E ARSVFD MPE+D+VS
Sbjct: 222 ACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVS 281

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++I  Y       EA+ L+ +M+ E+V  D +T+V +LS+CA +GAL +G ++  +  
Sbjct: 282 WGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVD 341

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
              F+ +  +G AL+D+YAKCG++  A+ VF  M+++D + WN++I G  ++G    +  
Sbjct: 342 RNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFG 401

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F Q+   G  PD  TF+GLLCGC+H GLV+EG  YF+ M   ++L P I+HYGC+VDL 
Sbjct: 402 LFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLL 461

Query: 338 GRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAG L++A ++I N    ++ ++W  LLG+C+IHR+ ++ E+A+K L++LE  ++G+YV
Sbjct: 462 GRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYV 521

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+ IY+     +  A+ R  +    I+  PG SWIE+   VH+F+V DK HP ++ IY 
Sbjct: 522 LLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYA 581

Query: 457 KLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           KL+E+  + K  GY  T D  L  +     E FL      HSEKLAIAFGL +      +
Sbjct: 582 KLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFL----GCHSEKLAIAFGLISATPTAVI 637

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+VKNLR            S    R++ VRD  R+H FR+G CSC DYW
Sbjct: 638 RVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 194/345 (56%), Gaps = 10/345 (2%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           S  +Y + LF+QI+ P    WN++IR    +     AI +Y  M       P+ FTF F 
Sbjct: 60  SDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGF-LPNNFTFPFV 118

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LKAC R+  L    ++H  V++ G++  V V T+L+  YA  G +E A  VFD++P++++
Sbjct: 119 LKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNV 178

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW +IIS Y       EA+ ++ R+   ++  D FT+V +LS+C  +G LN G ++H+ 
Sbjct: 179 VSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKC 238

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             EMG V +V+VG +LVDMYAKCGN++ A  VF  M ++D++SW +MI GY ++G   EA
Sbjct: 239 IMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEA 298

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR----YNLKPGIKHYG 331
           I  F QM      PD  T +G+L  C+  G +E G E+   +V R    YN   G     
Sbjct: 299 IDLFLQMQRENVKPDCYTVVGVLSACARLGALELG-EWVSGLVDRNEFLYNPVLGTA--- 354

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEI 376
            L+DLY + G + +A EV       D V+W  ++    ++  V+I
Sbjct: 355 -LIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKI 398


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/525 (39%), Positives = 299/525 (56%), Gaps = 19/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           +++ F  I+ P    WN L+  F Q      A+ ++  M    +  P+T T +  L AC 
Sbjct: 453 SEMKFQGIE-PDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMD-PNTTTISGALAACG 510

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +V+ L   +E+HG+V+R+  E    V + L+  Y+    +E A SVF  +  RD+V WNS
Sbjct: 511 QVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNS 570

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           IIS   Q+   + AL L   M   +V ++  T+V  L +C+ + AL  G  +H+     G
Sbjct: 571 IISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCG 630

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
                ++ N+L+DMY +CG++  +  +F  M +RD++SWN MI  YG+HG G +A++ F+
Sbjct: 631 LDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQ 690

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           Q    G  P+ ITF  LL  CSH GL+EEG +YF MM + Y + P ++ Y C+VDL  RA
Sbjct: 691 QFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRA 750

Query: 341 GKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G+  + LE I    P +P   +W +LLG+C+IH N ++ E A + L +LE  S+G+YVL+
Sbjct: 751 GQFNETLEFIE-KMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLM 809

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           A IY+     E  A+ R L+K  G+   PG SWIE+  ++H FVV D SHP  + I  K+
Sbjct: 810 ANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKM 869

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           E +    K IGY  D + V       ED  E S   HSEK+A+AFGL +T  GT LRI+K
Sbjct: 870 ESLYFDIKEIGYVPDTNFVL--QDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIK 927

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S    RD+I+RD  R+HHF DG+CSCGDYW
Sbjct: 928 NLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 161/357 (45%), Gaps = 38/357 (10%)

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQE 110
           P   +W +LI    Q+    +A+  +  M++  + +P++ T    + AC  +  L   +E
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGV-KPNSITIASAVSACTNLSLLRHGRE 383

Query: 111 LHGFVIR-SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           +HG+ I+    +  ++V  +L+  YA    +E AR  F  + + DLVSWN++++ Y    
Sbjct: 384 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRG 443

Query: 170 FHLEALKLYERMRFEDVGLD---------GF--------------------------TLV 194
            H EA++L   M+F+ +  D         GF                          T+ 
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTIS 503

Query: 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
             L++C  V  L +G  +H          S  VG+AL+ MY+ C +L+ A  VFS +  R
Sbjct: 504 GALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTR 563

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           DV+ WNS+I      GR   A+   ++M ++    +++T +  L  CS    + +G E  
Sbjct: 564 DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE-I 622

Query: 315 HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           H  + R  L         L+D+YGR G ++K+  + +     D V W  ++    +H
Sbjct: 623 HQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMH 679



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 128/260 (49%), Gaps = 4/260 (1%)

Query: 79  MLMAS--LSRPDTFT--FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGY 134
           ML++S  L+ PD     +   L+ C ++  L    ++H  ++ +G + C  + + L+  Y
Sbjct: 75  MLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVY 134

Query: 135 AANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLV 194
              G +E AR +FD M ER++ SW +I+  Y     + E +KL+  M  E V  D F   
Sbjct: 135 CQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFP 194

Query: 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
            +  +C+ +    +G  ++     +GF  +  V  +++DM+ KCG +D A   F  +  +
Sbjct: 195 KVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 254

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           DV  WN M+ GY   G   +A+     M ++G  PD +T+  ++ G +  G  EE  +YF
Sbjct: 255 DVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYF 314

Query: 315 HMMVSRYNLKPGIKHYGCLV 334
             M    + KP +  +  L+
Sbjct: 315 LEMGGLKDFKPNVVSWTALI 334



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 151/329 (45%), Gaps = 41/329 (12%)

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-----ERDLVSWNSIISCYTQASFHL 172
           SG +   V    ++ GYA +G  E A   F  M      + ++VSW ++I+   Q  +  
Sbjct: 285 SGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDF 344

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGNAL 231
           EAL ++ +M  E V  +  T+   +S+C ++  L  G  +H    ++  ++S + VGN+L
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           VD YAKC +++ A   F  +++ D++SWN+M+ GY + G  +EAI    +M   G  PD 
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSR-------------------YNLKPGIKHYG- 331
           IT+ GL+ G +  G  +  +E+F  M S                     NLK G + +G 
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524

Query: 332 --------------CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIG 377
                          L+ +Y     LE A  V +  S  D V+W +++ +C       + 
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACA-QSGRSVN 583

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTK 406
            + +   + L         +++ + AC+K
Sbjct: 584 ALDLLREMNLSNVEVNTVTMVSALPACSK 612


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/511 (39%), Positives = 296/511 (57%), Gaps = 48/511 (9%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +P+ FT +  +KAC  + +L + ++ H ++I+ G+E  VVV T L+  YA  G +E A  
Sbjct: 7   KPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGH 66

Query: 146 VFDNMPER-------------------------------DLVSWNSIISCYTQASFHLEA 174
           VFD M ER                               D+VSW ++I+ Y Q  +  E+
Sbjct: 67  VFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDES 126

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L ++ +MR   +  D F +  +LS+CA + AL +G   H    + GF   + VG+ALVDM
Sbjct: 127 LNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDM 186

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAK G+++ A  VF +M +R+ +SWNS+I G   HGRG++A+  F+QML AG  P+ I+F
Sbjct: 187 YAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISF 246

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           +G+L  CSH GLV EG  YF++M   Y + P + HY C++DL GRAG L++A   IN   
Sbjct: 247 VGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFIN-GM 305

Query: 355 PSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           P +P   +W  LLG+C+IH N E+ +   ++L+ +E   AG YVLL+ IYA     +  A
Sbjct: 306 PVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAA 365

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           + RKL+K  G+   PG+SWIE+   +H FV  + SHP    I+  LE +  + K  GY  
Sbjct: 366 KVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYVP 425

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           +++ V       +D  E S ++HSEKLAIAFG+  T  GT++R+ KNLR           
Sbjct: 426 NKNFVL--QDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTVIKF 483

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S+ ++R ++VRD  R+HHF+DG CSCGDYW
Sbjct: 484 ISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 124/242 (51%), Gaps = 3/242 (1%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LF ++      +W ++I  +AQ+    +++  +N M    + + D F     L AC  + 
Sbjct: 98  LFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGM-KSDRFIMGSVLSACADLA 156

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           AL   ++ H +V++SG+   +VV + L+  YA +G +E A  VFD MP+R+ VSWNSII+
Sbjct: 157 ALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIIT 216

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEMGFV 222
              Q     +A+ L+E+M    +  +  + V +LS+C+H G +N G  + + +    G V
Sbjct: 217 GCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIV 276

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
             V     ++D+  + G LD A    + M  + DV  W +++    +HG  + A    + 
Sbjct: 277 PDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEH 336

Query: 282 ML 283
           +L
Sbjct: 337 LL 338


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/558 (38%), Positives = 317/558 (56%), Gaps = 42/558 (7%)

Query: 29  SYAISVSSSL--SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIF-YYNHMLMASLS 85
           S+ ++ SS    +YA  +FN I NP    +N+LI +       +   F  YNH+L     
Sbjct: 41  SHLLNTSSKFASTYAFTIFNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTL 100

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIR---SGYERCVVVSTNLMRGYAANGVIEA 142
           +P++FTF    KAC     L     LH  V++     Y+    V  +L+  YA  G +  
Sbjct: 101 QPNSFTFPSLFKACASHPWLQHGPPLHAHVLKFLQPPYDP--FVQNSLLNFYAKYGKLCV 158

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFH-------------LEALKLYERMRFEDVGLD 189
           +R +FD + E DL +WN++++ Y Q++ H             LEAL L+  M+   +  +
Sbjct: 159 SRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPN 218

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
             TLV L+S+C+++GAL+ G + H          + +VG ALVDMY+KCG L+ A  +F 
Sbjct: 219 EVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFD 278

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            +  RD   +N+MI G+ VHG G++A+  ++ M +    PD  T +  +  CSH GLVEE
Sbjct: 279 ELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEE 338

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGS 367
           G+E F  M   + ++P ++HYGCL+DL GRAG+L++A E +    P  P  +LWR+LLG+
Sbjct: 339 GLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQ-DMPMKPNAILWRSLLGA 397

Query: 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTP 427
            K+H N+E+GE A+K+L++LE  ++G+YVLL+ +YA       V R R L+K +G+   P
Sbjct: 398 AKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLP 457

Query: 428 GWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK--DESLVAVSGSSSE 485
           G+S +EI   +H+F+  DK+HP +  IY K+ EI  R    G+     E L  V     E
Sbjct: 458 GFSLVEINGAMHEFLTGDKAHPFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKE 517

Query: 486 DFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRD 533
           DFL    +YHSE+LAIAF L  +     +RI+KNLR            S AY RD+IVRD
Sbjct: 518 DFL----SYHSERLAIAFALIASSSSMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVRD 573

Query: 534 RVRYHHFRDGLCSCGDYW 551
           R R+HHF+DG CSC DYW
Sbjct: 574 RNRFHHFKDGSCSCLDYW 591


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/524 (38%), Positives = 304/524 (58%), Gaps = 16/524 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+LLF  I+ P   ++N+LI  F+ +     A+ Y+  +L++   R  + T    +    
Sbjct: 258 ARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSG-QRVSSSTMVGLIPVSS 316

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               L+    + GF ++SG      VST L   Y+    I+ AR +FD   E+ + +WN+
Sbjct: 317 PFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNA 376

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y Q+     A+ L++ M   +   +  T+  +LS+CA +GAL+ G  +H++     
Sbjct: 377 MISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKN 436

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
             +++YV  AL+DMYAKCGN+  A  +F    +++ ++WN+MI GYG+HG GDEA+  F 
Sbjct: 437 LEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFN 496

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML  GF P S+TFL +L  CSH GLV EG E FH MV++Y ++P  +HY C+VD+ GRA
Sbjct: 497 EMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRA 556

Query: 341 GKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+LEKALE I        P +W TLLG+C IH++  +  +A + L +L+  + G YVLL+
Sbjct: 557 GQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLS 616

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            IY+  ++    A  R+ +K   +  TPG + IE+    H FV  D+SH     IY KLE
Sbjct: 617 NIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLE 676

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           E+  + + +GY + E++ A+     E+  E     HSEKLAIAFGL TT  GT +RI+KN
Sbjct: 677 ELTGKMREMGY-QSETVTALHDVEEEE-KELMFNVHSEKLAIAFGLITTEPGTEIRIIKN 734

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    R ++VRD  R+HHF+DG+CSCGDYW
Sbjct: 735 LRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 173/338 (51%), Gaps = 29/338 (8%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSP-LQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           +A+ LF  +  P    +N LI+ F  S SP   +I +Y H+L  +   PD FT+ F + A
Sbjct: 58  HARALFFSVPKPDIFLFNVLIKGF--SFSPDASSISFYTHLLKNTTLSPDNFTYAFAISA 115

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
                 L  C  LH   +  G++  + V++ L+  Y     +  AR VFD MP+RD V W
Sbjct: 116 SPD-DNLGMC--LHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLW 172

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218
           N++I+   +   + +++++++ M  + V LD  T+  +L + A +  + +G+ +  +A +
Sbjct: 173 NTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALK 232

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
           +GF    YV   L+ +++KC ++D+A  +F  +RK D++S+N++I G+  +G  + A+ +
Sbjct: 233 LGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKY 292

Query: 279 FKQMLMAGFHPDSITFLGLL----------CGCSHQGL-VEEGVEYFHMMVSRYNLKPGI 327
           F+++L++G    S T +GL+            C  QG  V+ G            L+P +
Sbjct: 293 FRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGT----------ILQPSV 342

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                L  +Y R  +++ A ++ + SS      W  ++
Sbjct: 343 S--TALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMI 378



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 176/372 (47%), Gaps = 7/372 (1%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           S ++YA+ +F+++ +  T  WN++I    ++     ++  +  M+   + R D+ T    
Sbjct: 152 SRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGV-RLDSTTVATV 210

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L A   ++ +     +    ++ G+     V T L+  ++    ++ AR +F  + + DL
Sbjct: 211 LPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDL 270

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VS+N++IS ++       A+K +  +      +   T+V L+   +  G L++   +   
Sbjct: 271 VSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGF 330

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             + G +    V  AL  +Y++   +D A  +F    ++ V +WN+MI GY   G  + A
Sbjct: 331 CVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMA 390

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           IS F++M+   F P+ +T   +L  C+  G +  G +  H ++   NL+  I     L+D
Sbjct: 391 ISLFQEMMTTEFTPNPVTITSILSACAQLGALSFG-KSVHQLIKSKNLEQNIYVSTALID 449

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAG 393
           +Y + G + +A ++ + +S  + V W T++    +H     G+ A+K  N +        
Sbjct: 450 MYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHG---YGDEALKLFNEMLHLGFQPS 506

Query: 394 DYVLLATIYACT 405
               L+ +YAC+
Sbjct: 507 SVTFLSVLYACS 518



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 2/217 (0%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           + +  A+ LF++       AWN++I  +AQS     AI  +  M+    + P+  T T  
Sbjct: 354 NEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFT-PNPVTITSI 412

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L AC ++ AL+  + +H  +     E+ + VST L+  YA  G I  A  +FD   E++ 
Sbjct: 413 LSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNT 472

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           V+WN++I  Y    +  EALKL+  M          T + +L +C+H G +  G  +   
Sbjct: 473 VTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHA 532

Query: 216 ACEMGFVESVYVGNA-LVDMYAKCGNLDSAFCVFSRM 251
                 +E +    A +VD+  + G L+ A     +M
Sbjct: 533 MVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKM 569



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 9/205 (4%)

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           E H  +IR+GY+  +   T L +     G    AR++F ++P+ D+  +N +I  +   S
Sbjct: 26  ETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGF---S 82

Query: 170 FHLEA--LKLYER-MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
           F  +A  +  Y   ++   +  D FT    +S+       N+G+ LH  A   GF  +++
Sbjct: 83  FSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDD---NLGMCLHAHAVVDGFDSNLF 139

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           V +ALVD+Y K   +  A  VF +M  RD + WN+MI G   +   D+++  FK M+  G
Sbjct: 140 VASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQG 199

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGV 311
              DS T   +L   +    V+ G+
Sbjct: 200 VRLDSTTVATVLPAVAEMQEVKVGM 224


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 309/572 (54%), Gaps = 54/572 (9%)

Query: 29  SYAISVSSS--LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR 86
           S+ IS +SS  L YAQ++F+    P T  WN +IR F+ S  P +++  Y  ML +S   
Sbjct: 54  SFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPH 113

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
            + +TF   LKAC  + A  +  ++H  + + GYE  V    +L+  YA  G  + A  +
Sbjct: 114 -NAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLL 172

Query: 147 FDNMPERDLVSWNSII-------------------------------SCYTQASFHLEAL 175
           FD +PE D VSWNS+I                               S Y QA  + EAL
Sbjct: 173 FDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEAL 232

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           +L+  M+  DV  D  +L   LS+CA +GAL  G ++H    +        +G  L+DMY
Sbjct: 233 QLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMY 292

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           AKCG ++ A  VF  ++K+ V +W ++I GY  HG G EAIS F +M   G  P+ ITF 
Sbjct: 293 AKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFT 352

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
            +L  CS+ GLVEEG   F+ M   YNLKP I+HYGC+VDL GRAG L++A   I    P
Sbjct: 353 AVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQ-EMP 411

Query: 356 SDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
             P  V+W  LL +C+IH+N+E+GE   + L+ ++    G YV  A I+A  K  +  A 
Sbjct: 412 LKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAE 471

Query: 414 TRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK- 472
           TR+L+K  G+   PG S I +    H+F+  D+SHP+ + I  K   +  + +  GY   
Sbjct: 472 TRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPE 531

Query: 473 -DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
            +E L+ +     +D  E     HSEKLAI +GL  T  GT +RI+KNLR          
Sbjct: 532 LEEMLLDL---VDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTK 588

Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             S  Y RD+++RDR R+HHFRDG CSCGDYW
Sbjct: 589 LISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 158/359 (44%), Gaps = 40/359 (11%)

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR---GYAANGVIEAARSVFDNMP 151
           T+   +R     + +++H  ++++G  +     T  +       ++  +  A+ VFD   
Sbjct: 17  TMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFD 76

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
             D   WN +I  ++ +     +L LY+RM       + +T   LL +C+++ A      
Sbjct: 77  RPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQ 136

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H    ++G+   VY  N+L++ YA  GN   A  +F R+ + D +SWNS+I GY   G+
Sbjct: 137 IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196

Query: 272 GDEAISFFKQM----------LMAG-------------FH--------PDSITFLGLLCG 300
            D A++ F++M          +++G             FH        PD+++    L  
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-LVDLYGRAGKLEKALEVINTSSPSDPV 359
           C+  G +E+G ++ H  +++  ++      GC L+D+Y + G++E+ALEV          
Sbjct: 257 CAQLGALEQG-KWIHSYLNKTRIRMD-SVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
            W  L+     H +   G  A+   ++++       V+  T         G+    KLI
Sbjct: 315 AWTALISGYAYHGH---GREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLI 370


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/495 (42%), Positives = 294/495 (59%), Gaps = 20/495 (4%)

Query: 73  IFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR 132
           IF Y+ ML  S+S P+ FT+   ++AC    A+ + +++H  V++ G+        NL+ 
Sbjct: 79  IFMYSRMLHKSVS-PNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIH 137

Query: 133 GYAANGVIEAARSVFDNMPERDL--VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190
            Y     +E AR VFDNMP+RD   VSWN++I+ Y Q++   EA  L++RMR E+V LD 
Sbjct: 138 MYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDK 197

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
           F    +LS+C  +GAL  G ++H    + G      +   ++DMY KCG L+ A  VF+ 
Sbjct: 198 FVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNE 257

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           + ++ + SWN MI G  +HG+G+ AI  FK+M      PD ITF+ +L  C+H GLVEEG
Sbjct: 258 LPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEG 317

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSC 368
             YF  M     LKPG++H+GC+VDL GRAG LE+A ++IN    +P   VL   L+G+C
Sbjct: 318 KHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLG-ALVGAC 376

Query: 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPG 428
           +IH N E+GE   K +++LE  ++G YVLLA +YA     E VA+ RKL+   G+K  PG
Sbjct: 377 RIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPG 436

Query: 429 WSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFL 488
           +S IE  + V +F+   ++HP A  IY KL+EI+   + IGY  D     V     E+  
Sbjct: 437 FSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTD--GVLHDIDEEEK 494

Query: 489 EKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVR 536
           E    YHSEKLAIAFGL  T  G +LRI KNLR            S  Y R++I+RDR R
Sbjct: 495 ENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNR 554

Query: 537 YHHFRDGLCSCGDYW 551
           +HHFR G CSC DYW
Sbjct: 555 FHHFRMGGCSCKDYW 569


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/529 (38%), Positives = 307/529 (58%), Gaps = 19/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +S A+++F+++       W  LI  +AQ      A+     M  A ++ P+  TF   L+
Sbjct: 199 ISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVA-PNKITFASILQ 257

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C    AL   +++H ++I+SGY R + V  +L+  Y   G +E AR +F ++P RD+V+
Sbjct: 258 GCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVT 317

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++++ Y Q  FH EA+ L+ RM+ + +  D  T   +L+SC+    L  G  +H+   
Sbjct: 318 WTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLV 377

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY-GVHGRGDEAI 276
             G+   VY+ +ALV MYAKCG++D A  VF++M +R+V++W ++I G    HGR  EA+
Sbjct: 378 HAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREAL 437

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
            +F QM   G  PD +TF  +L  C+H GLVEEG ++F  M   Y +KP ++HY C VDL
Sbjct: 438 EYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDL 497

Query: 337 YGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG LE+A  VI  S P    P +W  LL +C++H +VE GE A +N+++L+    G 
Sbjct: 498 LGRAGHLEEAENVI-LSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGA 556

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YV L++IYA     E   + R++++   +   PG SWIE+  +VH F V+DKSHP+++ I
Sbjct: 557 YVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQI 616

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y +L ++  + K +GY  D   V       E+  E+    HSE+LAI +GL  TP G  +
Sbjct: 617 YVELGKLTEQIKEMGYVPDTRFVL--HDVDEEQKERILFSHSERLAITYGLMKTPPGMPI 674

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RIVKNLR            S    R++I RD  R+HHF DG+CSCGD+W
Sbjct: 675 RIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 191/376 (50%), Gaps = 13/376 (3%)

Query: 3   LKKHARYVGLNKARQAHE------IHGEWLLNSYAISVSS---SLSYAQLLFNQIQNPQT 53
           L++ AR   L + R+ H       I     L +  +S+ +   SL+ A+ +F+ I++   
Sbjct: 54  LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNI 113

Query: 54  QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
            +W ++I AF      L+A   Y  M +A   +PD  TF   L A    + L   Q++H 
Sbjct: 114 VSWTAMIEAFVAGNKNLEAFKCYETMKLAG-CKPDKVTFVSLLNAFTNPELLQLGQKVHM 172

Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
            ++ +G E    V T+L+  YA  G I  AR +FD +PE+++V+W  +I+ Y Q      
Sbjct: 173 EIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDV 232

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           AL+L E M+  +V  +  T   +L  C    AL  G  +HR   + G+   ++V N+L+ 
Sbjct: 233 ALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLIT 292

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY KCG L+ A  +FS +  RDV++W +M+ GY   G  DEAI+ F++M   G  PD +T
Sbjct: 293 MYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMT 352

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMV-SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           F  +L  CS    ++EG      +V + YNL   ++    LV +Y + G ++ A  V N 
Sbjct: 353 FTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ--SALVSMYAKCGSMDDASLVFNQ 410

Query: 353 SSPSDPVLWRTLLGSC 368
            S  + V W  ++  C
Sbjct: 411 MSERNVVAWTAIITGC 426



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 157/302 (51%), Gaps = 16/302 (5%)

Query: 71  QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130
           +A+   N M++   +R  +  F   L+ C R+++L + +E+H  +++SG +    +   L
Sbjct: 30  EALGIMNTMILQG-TRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTL 88

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190
           +  YA  G +  AR VFD++ +R++VSW ++I  +   + +LEA K YE M+      D 
Sbjct: 89  LSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDK 148

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
            T V LL++  +   L +G  +H    E G      VG +LV MYAKCG++  A  +F R
Sbjct: 149 VTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDR 208

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           + +++V++W  +I GY   G+ D A+   + M  A   P+ ITF  +L GC+    +E G
Sbjct: 209 LPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHG 268

Query: 311 VEYFHMMVSRYNLKPGIKHYG-------CLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
            +     V RY ++ G   YG        L+ +Y + G LE+A ++ +     D V W  
Sbjct: 269 KK-----VHRYIIQSG---YGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTA 320

Query: 364 LL 365
           ++
Sbjct: 321 MV 322



 Score = 38.9 bits (89), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           GR  EA+     M++ G    S  F GLL  C+    +E+G E  H  + +  ++P    
Sbjct: 26  GRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGRE-VHAAILKSGIQPNRYL 84

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
              L+ +Y + G L  A  V ++    + V W  ++
Sbjct: 85  ENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMI 120


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/567 (37%), Positives = 323/567 (56%), Gaps = 54/567 (9%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S ++ L YA  + +QIQNP    +N+LIR  + S +P  +  YY   L   L  PD  T 
Sbjct: 62  STTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGL-LPDNITH 120

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF----- 147
            F +KAC +++      + HG  I+ G+E+   V  +L+  YA+ G I AARSVF     
Sbjct: 121 PFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCR 180

Query: 148 --------------------------DNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
                                     D MPER+LV+W+++IS Y + +   +A++ +E +
Sbjct: 181 FDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEAL 240

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           + E V  +   +V ++SSCAH+GAL MG   H          ++ +G A+VDMYA+CGN+
Sbjct: 241 QAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNV 300

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           + A  VF ++ ++DVL W ++I G  +HG  ++A+ +F +M   GF P  ITF  +L  C
Sbjct: 301 EKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTAC 360

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI--NTSSPSDPV 359
           SH G+VE G+E F  M   + ++P ++HYGC+VDL GRAGKL KA + +      P+ P+
Sbjct: 361 SHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPI 420

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
            WR LLG+C+IH+NVE+GE   K L++++   +G YVLL+ IYA     + V   R+++K
Sbjct: 421 -WRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMK 479

Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE-IMHRAKFIGYTKD--ESL 476
             G++  PG+S IEI  +VH+F + DK+HP+ + I R  E+ I+ + K  GY  +  E++
Sbjct: 480 DKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETM 539

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
             +     E  L +    HSEKLAIA+G+      T +RIVKNLR            S  
Sbjct: 540 FDIDEEEKEGALHR----HSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKV 595

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +  +LIVRDR R+HHF++G CSC DYW
Sbjct: 596 FEVELIVRDRNRFHHFKEGTCSCMDYW 622


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/610 (35%), Positives = 328/610 (53%), Gaps = 81/610 (13%)

Query: 17  QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYY 76
           Q H + G  LL  YA    S+  +A  +F+ I NP    WN +I+   ++    +AI++Y
Sbjct: 63  QDHYVSGA-LLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFY 121

Query: 77  NHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY---------------- 120
             M++ +  RP+ FT+    KAC   +A+ + +++HG V++ G                 
Sbjct: 122 GRMVIDA--RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYAS 179

Query: 121 --------------ERCVVVSTNLMRGYAANGVIEAA----------------------- 143
                         E  VV    ++ GY   GV+EAA                       
Sbjct: 180 FGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239

Query: 144 --------RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
                   R +FD M ERD +SW+S++  Y  A  + EAL+++++M+ E+     F L  
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L++C+++GA++ G ++H             +G AL+DMYAKCG LD  + VF  M++R+
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE 359

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           + +WN+MI G  +HGR ++A+  F ++      P+ IT +G+L  C+H G V++G+  F 
Sbjct: 360 IFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQ 419

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRN 373
            M   Y + P ++HYGC+VDL GR+G   +A ++IN S P  P   +W  LLG+C+IH N
Sbjct: 420 TMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLIN-SMPMKPNAAVWGALLGACRIHGN 478

Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIE 433
            ++ E   K L++LE  ++G YVLL+ IYA     + V++ RKL+K+ GIKT PG S ++
Sbjct: 479 FDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVD 538

Query: 434 IGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA 493
           +   VH+F + D SHP    IYRKL+ I  R +  G++ D S V       E   E +  
Sbjct: 539 LNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEK--ETAVN 596

Query: 494 YHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFR 541
           YHSEKLAIAFGL  T  G  + IVKNLR            S  + R++IVRDRVRYHHF+
Sbjct: 597 YHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFK 656

Query: 542 DGLCSCGDYW 551
           +G CSC D+W
Sbjct: 657 NGTCSCKDFW 666



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 136/337 (40%), Gaps = 65/337 (19%)

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN--GVIEAARSVFDNMPERDLVSWN 159
           + +L    +LH  V+RSG+ +   VS  L++ YA       + A  VF ++P  ++  WN
Sbjct: 43  ITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWN 102

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
            +I    + +   +A+  Y RM   D   + FT   L  +C+   A+  G  +H    + 
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVI-DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKH 161

Query: 220 GFVESVYVGNALVDMYA------------------------------KCGNLDSAFCVFS 249
           G    V++ +A + MYA                              KCG L++A  +F+
Sbjct: 162 GIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFA 221

Query: 250 RM-------------------------------RKRDVLSWNSMIVGYGVHGRGDEAISF 278
           +M                                +RD +SW+SM+ GY   GR  EA+  
Sbjct: 222 QMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEI 281

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F+QM      P       +L  CS+ G +++G  + H  + R ++K        L+D+Y 
Sbjct: 282 FQQMQREETRPGRFILSSVLAACSNIGAIDQG-RWVHAYLKRNSIKLDAVLGTALLDMYA 340

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
           + G+L+   EV       +   W  ++G   IH   E
Sbjct: 341 KCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAE 377


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/568 (38%), Positives = 323/568 (56%), Gaps = 26/568 (4%)

Query: 6   HARYVGLNKARQAHEIHGEWLLN---SYAISVSSSLSYAQLLFNQIQNPQTQAW-NSLIR 61
           HA  V      QAH      LL           + L+YA+ +F++I +P    W N+L+R
Sbjct: 48  HAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLR 107

Query: 62  AFAQSLSPL----QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
            +A+         +A   +  M+   ++ PDT+TF   LKAC   +A  + ++ HG  ++
Sbjct: 108 GYARGGWGGGCAEEAARVFVRMMEEGVA-PDTYTFVSLLKACASARAGEEGRQAHGVAVK 166

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177
           +G      V+  L+  YA  G + AAR +FD M    +VS+N++I+   ++S   EAL L
Sbjct: 167 AGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVL 226

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
           +  M+ + +     TL+ +LS+CA +GAL +G ++H    +M     V V  AL+DMYAK
Sbjct: 227 FREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAK 286

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
           CG+L+ A  VF  M  RD  +W+ M+V Y  HG G EAIS F++M   G  PD +TFLG+
Sbjct: 287 CGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGV 346

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           L  CSH G+V EG++YF  M   Y +  GIKHYGC+ DL  R+G+LE+A + I+   P  
Sbjct: 347 LYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFID-ELPIK 404

Query: 358 P--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415
           P  +LWRTLL +C  H +V++G+   + +++L+ +  GDYV+ + + A T   E +   R
Sbjct: 405 PTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVR 464

Query: 416 KLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES 475
           KL+   G+   PG S IEI N VH+F   D SHP +    R ++E++ + K +GY  + S
Sbjct: 465 KLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTS 524

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
            V       E+    S  YHSEKLAI+FGL  T  GT+LRIVKNLR            S+
Sbjct: 525 HV-FHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSM 583

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            ++R +I+RD  R+HHF DG+CSCGDYW
Sbjct: 584 VFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/545 (39%), Positives = 324/545 (59%), Gaps = 32/545 (5%)

Query: 26  LLNSYA-ISVSSSLSYAQLL--FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           L+ SYA +S +  LS+   L  F+ ++ P    WN +I+   ++  P +AI  Y  M++A
Sbjct: 93  LVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVA 152

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG-VIE 141
              RP+ +T+   LKAC     + +  ++H  +++ G      + ++ +R YA+ G ++E
Sbjct: 153 HF-RPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVE 211

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
           A R + D   E D V       C+      +EAL+++ +M+ E +    F L  +LS+CA
Sbjct: 212 ARRILDDKGGEVDAVCMPDRKGCF------MEALEIFHQMQKEKIRPRKFVLPSVLSACA 265

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
           ++GAL+ G ++H  A          +G +LVDMYAKCG +D A+ VF +M  ++V SWN+
Sbjct: 266 NLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNA 325

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI G  +HGR ++AI  F +M     +P+ ITF+G+L  C+H GLV++G+  F+ M   Y
Sbjct: 326 MIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEY 382

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEI 379
            ++P I+HYGC+VDL GRAG L +A +V+ +S P++P   +W  LLG+C+ H NVE+GE 
Sbjct: 383 GVEPQIEHYGCIVDLLGRAGLLTEAEKVV-SSIPTEPTPAVWGALLGACRKHGNVELGER 441

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIG-NQV 438
             K L++LE  ++G Y LL+ IYA     E V   RKL+K  GIKTTPG S I++G  +V
Sbjct: 442 VGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEV 501

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           HKF++ D SHP    IY+ L+++  R +  GY  D S V       E   E +   HSEK
Sbjct: 502 HKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEK--ETAVWQHSEK 559

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LAI FGL  T  GT++RIVKNLR            S  Y+R++IVRDR+RYHHFR+G CS
Sbjct: 560 LAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACS 619

Query: 547 CGDYW 551
           C D+W
Sbjct: 620 CKDFW 624



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 140/326 (42%), Gaps = 20/326 (6%)

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA------CERVKALNKCQELHGF 114
           R  + + +  +A ++++H++    S   T T   + KA       +   +L+  ++ H  
Sbjct: 21  RMSSTATTATEAPYHHHHLIPNGHS---TETSKLSHKAILHLLNTQCTTSLHHLKQAHAL 77

Query: 115 VIRSGYERCVVVSTNLMRGYAANGV-----IEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           ++R+G+ +   ++ +L++ YA          E++  VFD + + ++  WN +I    + +
Sbjct: 78  ILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENN 137

Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
              +A+ LY  M       + +T   +L +C+  G +  G+ +H    + G     ++ +
Sbjct: 138 EPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILS 197

Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
           + + MYA  G L     V +R    D       +      G   EA+  F QM      P
Sbjct: 198 SAIRMYASFGRL-----VEARRILDDKGGEVDAVCMPDRKGCFMEALEIFHQMQKEKIRP 252

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
                  +L  C++ G +++G  + H    R +++        LVD+Y + G+++ A EV
Sbjct: 253 RKFVLPSVLSACANLGALDQG-RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEV 311

Query: 350 INTSSPSDPVLWRTLLGSCKIHRNVE 375
               S  +   W  ++G   +H   E
Sbjct: 312 FEKMSNKEVSSWNAMIGGLAMHGRAE 337


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/561 (37%), Positives = 322/561 (57%), Gaps = 51/561 (9%)

Query: 39  SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           SY +LLF+Q+  P   AW +LIRA+A      QA+ +Y+ M    +S P +FTF+    A
Sbjct: 60  SYPRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVS-PISFTFSALFSA 118

Query: 99  CERVKALNKCQELH-------GF-------------VIRSGYERC------------VVV 126
           C  V+      +LH       GF              ++ G  RC            V+ 
Sbjct: 119 CAAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVIS 178

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L+  Y   G + AAR +FD +P +D+V+W ++++ Y Q +  ++AL+++ R+R E V
Sbjct: 179 WTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGV 238

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF--VESVYVGNALVDMYAKCGNLDSA 244
            +D  TLV ++S+CA +GA     ++  IA   GF   ++V VG+AL+DMY+KCGN++ A
Sbjct: 239 EIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEA 298

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
           + VF  MR+R+V S++SMIVG+ +HGR   AI  F  ML  G  P+ +TF+G+L  CSH 
Sbjct: 299 YDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHA 358

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRT 363
           GLV++G + F  M   Y + P  + Y C+ DL  RAG LEKAL+++ T    SD  +W  
Sbjct: 359 GLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGA 418

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LLG+  +H N ++ EIA K L +LE  + G+Y+LL+  YA     + V++ RKL++   +
Sbjct: 419 LLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNL 478

Query: 424 KTTPGWSWIEIGN-QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           K  PGWSW+E  N  +HKFV  D SHP  + I ++L +++ R K IGY  + S +    +
Sbjct: 479 KKNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGIN 538

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
             E  L   +  HSEKLA+AFGL +T  G++++I+KNLR            S    R ++
Sbjct: 539 DREKRLLLMA--HSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIV 596

Query: 531 VRDRVRYHHFRDGLCSCGDYW 551
           VRD  R+HHF +G CSC ++W
Sbjct: 597 VRDNTRFHHFLNGACSCSNFW 617



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 125/292 (42%), Gaps = 38/292 (13%)

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA---ARSVFDNMP 151
            ++  ER  +LN+ +E+H  +     ++   V T L+R   A   +      R +F  + 
Sbjct: 11  VVRILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLH 70

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
             +  +W ++I  Y       +AL  Y  MR   V    FT   L S+CA V    +G  
Sbjct: 71  TPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQ 130

Query: 212 LHRIACEMG-FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV------ 264
           LH     +G F   +YV NA++DMY KCG+L  A  VF  M +RDV+SW  +IV      
Sbjct: 131 LHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIG 190

Query: 265 -------------------------GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
                                    GY  +    +A+  F+++   G   D +T +G++ 
Sbjct: 191 DMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVIS 250

Query: 300 GCSHQGLVEEGVEYFHMMV--SRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
            C+  G   +   +   +   S + +   +     L+D+Y + G +E+A +V
Sbjct: 251 ACAQLG-ASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDV 301


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/541 (38%), Positives = 312/541 (57%), Gaps = 19/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+ + A+S   S+ YA  +F QI  P T  +N++IR +   ++   A+F Y  ML   + 
Sbjct: 23  LVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVE 82

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
             D FT+    KAC  ++++ +  ++HG++ + G E  + V  +L+  Y   G IE + S
Sbjct: 83  -SDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCS 141

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVG 204
           VF++M  RD+ SW++II+ +       E L ++  M  E     +   LV +LS+C H+G
Sbjct: 142 VFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLG 201

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL++G   H          +V V  +L+DMY KCG ++    +F RM K++ LS++ MI 
Sbjct: 202 ALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMIT 261

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           G  +HGRG EA+  F  ML  G  PD + +LG+L  C+H GLV+EG++ F+ M   + ++
Sbjct: 262 GLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIE 321

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMK 382
           P I+HYGC+V L GRAG L KALE I  S P  P  V+WR LL +CK H N+EIGEIA K
Sbjct: 322 PTIQHYGCIVHLMGRAGMLNKALEHIR-SMPIKPNEVVWRGLLSACKFHHNLEIGEIAAK 380

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
           +L +L +++ GDYV+L+ +YA  K  E VA+ R  +   G   TPG+S +++  +++KFV
Sbjct: 381 SLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFV 440

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             D SHP    +Y  + ++  + KF GY+ D S V       E    +    HS+KLA+A
Sbjct: 441 SQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEEK--RQRLKAHSQKLAMA 498

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           F L  T  G  +RI +NLR            S+ Y R++ VRDR R+HHF+DG CSC DY
Sbjct: 499 FALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCSCRDY 558

Query: 551 W 551
           W
Sbjct: 559 W 559


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/523 (39%), Positives = 303/523 (57%), Gaps = 20/523 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+ I +    +W + I  +       +AI  +  +L   L RPD+F+    L AC+R  
Sbjct: 165 VFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGL-RPDSFSLVEVLSACKRTG 223

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L   + +  ++  +G  R V V+T L+  Y   G +E ARSVFD M E+++VSW+S+I 
Sbjct: 224 DLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQ 283

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y       EAL L+ +M  E +  D + +V +L SCA +GAL +G +   +     F++
Sbjct: 284 GYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLD 343

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           +  +G AL+DMYAKCG +D A+ VF  MRK+D + WN+ I G  + G   +A+  F QM 
Sbjct: 344 NSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQME 403

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
            +G  PD  TF+GLLC C+H GLVEEG  YF+ M   + L P I+HYGC+VDL GRAG L
Sbjct: 404 KSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCL 463

Query: 344 EKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
           ++A ++I +    ++ ++W  LLG C++HR+ ++ E+ +K L+ LE   +G+YVLL+ IY
Sbjct: 464 DEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIY 523

Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
           A +   E  A+ R ++   G+K  PG+SWIE+   VH+F+V D SHP ++ IY KL E+ 
Sbjct: 524 AASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELA 583

Query: 463 HRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
              K  GY  T D  L  +     E F+      HSEKLA+AFGL +T     + +VKNL
Sbjct: 584 KDLKAAGYVPTTDHVLFDIEEEEKEHFI----GCHSEKLAVAFGLISTAPNDKILVVKNL 639

Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R            S    R++IVRD  R+H F DGLCSC DYW
Sbjct: 640 RVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 173/323 (53%), Gaps = 2/323 (0%)

Query: 39  SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           +Y+  + +Q + P    +N++IR    +    ++I  Y+ M    LS PD+FTF F LKA
Sbjct: 59  NYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLS-PDSFTFPFVLKA 117

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
           C RV       ++H  V+++G E    V  +L+  Y   G I+ A  VFD++P+++  SW
Sbjct: 118 CARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASW 177

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218
            + IS Y       EA+ ++ R+    +  D F+LV +LS+C   G L  G ++     E
Sbjct: 178 TATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITE 237

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
            G V +V+V  ALVD Y KCGN++ A  VF  M +++++SW+SMI GY  +G   EA+  
Sbjct: 238 NGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDL 297

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +ML  G  PD    +G+LC C+  G +E G    +++     L   +     L+D+Y 
Sbjct: 298 FFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTA-LIDMYA 356

Query: 339 RAGKLEKALEVINTSSPSDPVLW 361
           + G++++A EV       D V+W
Sbjct: 357 KCGRMDRAWEVFRGMRKKDRVVW 379



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 126/261 (48%), Gaps = 1/261 (0%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L   + +H  ++R G +    +   ++R     G    +  + D   E ++  +N++I  
Sbjct: 23  LKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRG 82

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
                   E++++Y  MR E +  D FT   +L +CA V    +G+ +H +  + G    
Sbjct: 83  LVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEAD 142

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
            +V  +L+++Y KCG +D+AF VF  +  ++  SW + I GY   G+  EAI  F+++L 
Sbjct: 143 AFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLE 202

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            G  PDS + + +L  C   G +  G E+    ++   +   +     LVD YG+ G +E
Sbjct: 203 MGLRPDSFSLVEVLSACKRTGDLRSG-EWIDEYITENGMVRNVFVATALVDFYGKCGNME 261

Query: 345 KALEVINTSSPSDPVLWRTLL 365
           +A  V +     + V W +++
Sbjct: 262 RARSVFDGMLEKNIVSWSSMI 282


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/572 (38%), Positives = 317/572 (55%), Gaps = 48/572 (8%)

Query: 26  LLNSYAISVSSSLS-YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           LL   AIS SS  S YA  ++N I +P   A N++IR F +   P  +I  Y+HM  + +
Sbjct: 69  LLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFV 128

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
           + P+  T TF L+AC    A+ +  ++   VI+ G+ + V V   L+  Y     +E+A+
Sbjct: 129 AAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAK 188

Query: 145 SVFDNMPE-RDLVSWNSIISCYTQASFHLEALKLYERMRFEDV----------------- 186
            VFD +P  RD+VSWNS+I  + +      A KL+  M  +DV                 
Sbjct: 189 QVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELE 248

Query: 187 -GLDGF-------------TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
             LD F              LV LL++ A +G L  G  +H IA  + F  +  +G ALV
Sbjct: 249 KALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALV 308

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           DMYAKCG +D +  +F RM ++D  SWN MI G   HG G EA++ F++ L  GFHP ++
Sbjct: 309 DMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNV 368

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN- 351
           TF+G+L  CS  GLV EG  +F +M   Y ++P ++HYGC+VDL  RAG +  A+E+IN 
Sbjct: 369 TFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINR 428

Query: 352 TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
             +P DPVLW ++LGSC++H  +E+GE     L+Q++    G YV LA I+A  +  E V
Sbjct: 429 MPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDV 488

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
           ++ R+L+         GWS IE   +VH+FV  DK H     IY+ LE +  R    GY+
Sbjct: 489 SKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEHERTTEIYKMLEIMGVRIAAAGYS 548

Query: 472 KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
            + S  +V     E+  E +   HSE+LAIAFGL  T DG  +RI+KNLR          
Sbjct: 549 ANVS--SVLHDIEEEEKENAIKEHSERLAIAFGLLVTKDGDCIRIIKNLRVCGDCHEVSK 606

Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             S+ + R++IVRD  R+HHF+ G+CSC DYW
Sbjct: 607 IISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/610 (35%), Positives = 327/610 (53%), Gaps = 81/610 (13%)

Query: 17  QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYY 76
           Q H + G  LL  YA    S+  +A  +F+ I NP    WN +I+   ++    +AI++Y
Sbjct: 63  QDHYVSGA-LLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFY 121

Query: 77  NHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY---------------- 120
             M++ +  RP+ FT+    KAC   +A+ + +++HG V++ G                 
Sbjct: 122 GRMVIDA--RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYAS 179

Query: 121 --------------ERCVVVSTNLMRGYAANGVIEAA----------------------- 143
                         E  VV    ++ GY   GV+EAA                       
Sbjct: 180 FGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239

Query: 144 --------RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
                   R +FD M ERD +SW+S++  Y  A  + EAL+++++M+ E+     F L  
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L++C+++GA++ G ++H             +G AL+DMYAKCG LD  + VF  M++R+
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE 359

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           + +WN+MI G  +HGR ++A+  F ++      P+ IT +G+L  C+H G V++G+  F 
Sbjct: 360 IFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQ 419

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRN 373
            M   Y + P ++HYGC+VDL GR+G   +A ++IN S P  P   +W  LLG+C+IH N
Sbjct: 420 TMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLIN-SMPMKPNAAVWGALLGACRIHGN 478

Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIE 433
            ++ E   K L++LE  ++G YVLL+ IYA     + V++ RKL+K  GIKT PG S ++
Sbjct: 479 FDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVD 538

Query: 434 IGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA 493
           +   VH+F + D SHP    IYRKL+ I  R +  G++ D S V       E   E +  
Sbjct: 539 LNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEK--ETAVN 596

Query: 494 YHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFR 541
           YHSEKLAIAFGL  T  G  + IVKNLR            S  + R++IVRDRVRYHHF+
Sbjct: 597 YHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFK 656

Query: 542 DGLCSCGDYW 551
           +G CSC D+W
Sbjct: 657 NGTCSCKDFW 666



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 136/337 (40%), Gaps = 65/337 (19%)

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV--IEAARSVFDNMPERDLVSWN 159
           + +L    +LHG V+RSG+ +   VS  L++ YA       + A  VF ++P  ++  WN
Sbjct: 43  ITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWN 102

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
            +I    + +   +A+  Y RM   D   + FT   L  +C+   A+  G  +H    + 
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVI-DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKH 161

Query: 220 GFVESVYVG------------------------------NALVDMYAKCGNLDSAFCVFS 249
           G    V++                               N ++D Y KCG L++A  +F+
Sbjct: 162 GIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFA 221

Query: 250 R-------------------------------MRKRDVLSWNSMIVGYGVHGRGDEAISF 278
           +                               M +RD +SW+SM+ GY   GR  EA+  
Sbjct: 222 QMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEI 281

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F+QM      P       +L  CS+ G +++G  + H  + R ++K        L+D+Y 
Sbjct: 282 FQQMQREETRPGRFILSSVLAACSNIGAIDQG-RWVHAYLKRNSIKLDAVLGTALLDMYA 340

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
           + G+L+   EV       +   W  ++G   IH   E
Sbjct: 341 KCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAE 377


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/607 (35%), Positives = 329/607 (54%), Gaps = 66/607 (10%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLN--SYAISVSSSLSYAQLLFNQIQN--------PQ 52
            K   R + L   RQ   +HG  L +   Y + V ++L    LL  Q+          P+
Sbjct: 125 FKGFTRDIALEYGRQ---LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPK 181

Query: 53  TQ--AWNSLIRAFAQ--SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKC 108
                WN +I A+ +       + +F    ++      P T T    L AC ++K L   
Sbjct: 182 ADVITWNMIISAYNKVGKFEESRRLFL---VMEDKQVLPTTVTLVLVLSACSKLKDLRTG 238

Query: 109 QELHGFV-------------------------------IRSGYERCVVVSTNLMRGYAAN 137
           +++H +V                                RS   R ++  T ++ G+   
Sbjct: 239 KKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNL 298

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G I+ AR+ FD MPE+D VSW ++I  Y +++   EAL+L+  M+  +V  D FT+V +L
Sbjct: 299 GEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVL 358

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           ++CAH+GAL +G ++            ++V NAL+DMY KCG++D A  +F  M +RD  
Sbjct: 359 TACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF 418

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +W +MIVG  V+G G++A+  F  ML A   PD IT++G+L  C+H GLV++G +YF  M
Sbjct: 419 TWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRM 478

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEI 376
            S++ ++P I HYGCLVDL  RAG+L++A EVI N    ++ ++W  LL  C+++R  ++
Sbjct: 479 TSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDM 538

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
            E+ +K +++LE  +   YVLL  IYA  K    +   R+++   GIK TPG S IE+  
Sbjct: 539 AEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNG 598

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHS 496
           +VH+FV  D+SHP    I  KL+++    K  GY+ D S V +    +E+  E S   HS
Sbjct: 599 RVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFL--DIAEEDKENSVFRHS 656

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           EKLAIAFGL  +P G ++RI KNLR            S  Y+R++IVRDR R+HHF+ GL
Sbjct: 657 EKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGL 716

Query: 545 CSCGDYW 551
           CSC DYW
Sbjct: 717 CSCKDYW 723



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 186/402 (46%), Gaps = 38/402 (9%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
              YA+ LF++I  P    WN++IR +++   P   +  Y  ML   + +PD +TF F  
Sbjct: 67  DFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGV-KPDRYTFPFLF 125

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           K   R  AL   ++LHG V++ G +  V V T L++ Y   G ++ AR VFD  P+ D++
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 185

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           +WN IIS Y +     E+ +L+  M  + V     TLV +LS+C+ +  L  G  +H   
Sbjct: 186 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV 245

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS--------------- 261
                  ++ + NA++DMYA CG +DSA  +F  M  RD++SW +               
Sbjct: 246 KNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVAR 305

Query: 262 ----------------MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
                           MI GY    R  EA+  F+ M      PD  T + +L  C+H G
Sbjct: 306 NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLG 365

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +E G E+    + R  +K  +     L+D+Y + G ++KA  +    S  D   W  ++
Sbjct: 366 ALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMI 424

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACT 405
               ++ +   GE A+     +  AS    +   +  + ACT
Sbjct: 425 VGLAVNGH---GEKALDMFSNMLKASILPDEITYIGVLSACT 463



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 134/295 (45%), Gaps = 12/295 (4%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN--GVIEAAR 144
           P T      L+ CE   ++++ Q++H   I+ G     V+   +M     +  G  + AR
Sbjct: 16  PPTHPLISLLETCE---SMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYAR 72

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            +FD +PE +L  WN++I  Y++  F    + LY  M    V  D +T   L        
Sbjct: 73  RLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDI 132

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL  G  LH    + G   +V+V  ALV MY  CG LD+A  VF    K DV++WN +I 
Sbjct: 133 ALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIIS 192

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
            Y   G+ +E+   F  M      P ++T + +L  CS    +  G +  H  V    ++
Sbjct: 193 AYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHSYVKNCKVE 251

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL------LGSCKIHRN 373
             +     ++D+Y   G+++ AL +  + +  D + W T+      LG   + RN
Sbjct: 252 SNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARN 306


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/524 (38%), Positives = 314/524 (59%), Gaps = 21/524 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQ +F+++ +    +W ++I A++ +    +A+ +   ML   + RP+ FT++  L+AC+
Sbjct: 19  AQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGV-RPNMFTYSSVLRACD 77

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               L   ++LH  +I+ G +  V V + L+  Y+  G +E A  VFD M   DLV W+S
Sbjct: 78  ---GLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSS 134

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           II+ + Q S   EAL+L++RM+         TL  +L +C  +  L +G  +H     + 
Sbjct: 135 IIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVH--VHVLK 192

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           + + + + NAL+DMY KCG+L+ A  VF RM ++DV+SW++MI G   +G   EA+  F+
Sbjct: 193 YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFE 252

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            M + G  P+ +T +G+L  CSH GLVEEG+ YFH M   + + PG +HYGC++DL GRA
Sbjct: 253 SMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRA 312

Query: 341 GKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+L +A+++IN      D V WR LL +C++HRNV++   A K +++L+   AG YVLL+
Sbjct: 313 GRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLS 372

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            IYA T+    VA  R+ + + GIK  PG SWIE+  Q+H F++ D+SHP    I  +L 
Sbjct: 373 NIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLN 432

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           +++++   +GY  D + V       +  ++ S  YHSEKLAI FGL + P G ++RI KN
Sbjct: 433 QLIYKLMGVGYVPDTNFVLQDLEGEQ--MQDSLRYHSEKLAIVFGLMSLPRGQTIRIRKN 490

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            +    R +++RD VRYHHF+DGLCSCGD+W
Sbjct: 491 LRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 127/237 (53%), Gaps = 6/237 (2%)

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           L+  Y   G++  A+ VFD MP+R++VSW ++IS Y+ A  + +AL+    M  E V  +
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPN 65

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
            FT   +L +C  +  L     LH    ++G    V+V +AL+D+Y++ G L++A  VF 
Sbjct: 66  MFTYSSVLRACDGLFNLRQ---LHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFD 122

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            M   D++ W+S+I G+  +  GDEA+  FK+M  AGF     T   +L  C+   L+E 
Sbjct: 123 EMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLEL 182

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           G +  H+ V +Y+    + +   L+D+Y + G LE A  V       D + W T++ 
Sbjct: 183 GRQ-VHVHVLKYDQDLILNN--ALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIA 236



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 138/284 (48%), Gaps = 14/284 (4%)

Query: 11  GLNKARQAH------EIHGEWLLNSYAISVSS---SLSYAQLLFNQIQNPQTQAWNSLIR 61
           GL   RQ H       +  +  + S  I V S    L  A  +F+++       W+S+I 
Sbjct: 78  GLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIA 137

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
            FAQ+    +A+  +  M  A      T T T  L+AC  +  L   +++H  V++  Y+
Sbjct: 138 GFAQNSDGDEALRLFKRMKRAGFLAQQT-TLTSVLRACTGLALLELGRQVHVHVLK--YD 194

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           + ++++  L+  Y   G +E A +VF  M E+D++SW+++I+   Q  +  EALKL+E M
Sbjct: 195 QDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESM 254

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           +   +  +  T+V +L +C+H G +  G+ + H +    G          ++D+  + G 
Sbjct: 255 KVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGR 314

Query: 241 LDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           L  A  + + M  + D ++W +++    VH   D AI   KQ+L
Sbjct: 315 LSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQIL 358



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 31/220 (14%)

Query: 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
           ++ N L++MY K G L  A  VF +M  R+V+SW +MI  Y      D+A+ F   ML  
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
           G  P+  T+  +L  C   GL    +   H  + +  L   +     L+D+Y R G+LE 
Sbjct: 61  GVRPNMFTYSSVLRACD--GLF--NLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELEN 116

Query: 346 ALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYA 403
           AL V +     D V+W +++     + +   G+ A++   +++ A   A    L + + A
Sbjct: 117 ALRVFDEMVTGDLVVWSSIIAGFAQNSD---GDEALRLFKRMKRAGFLAQQTTLTSVLRA 173

Query: 404 CTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           CT                      G + +E+G QVH  V+
Sbjct: 174 CT----------------------GLALLELGRQVHVHVL 191


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/567 (37%), Positives = 317/567 (55%), Gaps = 64/567 (11%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA  +F+QIQNP    +N LIR F+    P +A  +Y  ML + +  PD  TF F +K
Sbjct: 69  LGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRI-WPDNITFPFLIK 127

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           A   ++ +   ++ H  ++R G++                               R VV 
Sbjct: 128 ASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVS 187

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T+++ GY   G++E AR +FD MP R+L +W+ +I+ Y + +   +A+ L+E M+ E V
Sbjct: 188 WTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGV 247

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             +   +V ++SSCAH+GAL  G   H    +     ++ +G ALVDMY +CG ++ A  
Sbjct: 248 VANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIR 307

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF  +  +D LSW+S+I G  VHG   +AI +F QM+  GF P  IT   +L  CSH GL
Sbjct: 308 VFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGL 367

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI--NTSSPSDPVLWRTL 364
           V++G+E +  M   Y ++P ++HYGC+VD+ GRAGKL +A   I      P+ P+L   L
Sbjct: 368 VDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPIL-GAL 426

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
           LG+CKI++N E+ E     L++++   +G YVLL+ IYAC    E +   R ++K   +K
Sbjct: 427 LGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVK 486

Query: 425 TTPGWSWIEIGNQVHKFVV-DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
             PGWS IEI  +++KF + DD+ HP+   I R  EEI+ + + IGY          G++
Sbjct: 487 KPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGY---------KGNT 537

Query: 484 SEDFL-----EKSSA--YHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
            + F      EK +A   HSEKLAIA+G+  T  GT++RIVKNLR            S  
Sbjct: 538 GDAFFDVDEEEKETAIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEV 597

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           Y R+ IVRDR R+HHFR+GLCSC DYW
Sbjct: 598 YGREFIVRDRNRFHHFRNGLCSCRDYW 624



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 141/335 (42%), Gaps = 42/335 (12%)

Query: 111 LHGFVIRSGYERCVVVSTNLM---------RGYAANGVIEAARSVFDNMPERDLVSWNSI 161
           +HGF++R+     V V++ L+           +    ++  A  +F  +   +L  +N +
Sbjct: 31  IHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFVFNVL 90

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           I C++  +   +A   Y +M    +  D  T   L+ +   +  + +G   H      GF
Sbjct: 91  IRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGF 150

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE------- 274
              VYV N+LV MYA CG + +A  +F +M  RDV+SW SM+ GY   G  ++       
Sbjct: 151 QNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDE 210

Query: 275 ------------------------AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
                                   AI  F+ M   G   +    + ++  C+H G +E G
Sbjct: 211 MPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFG 270

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI 370
            E  H  V + ++   +     LVD+Y R G++EKA+ V       D + W +++    +
Sbjct: 271 -ERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAV 329

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           H +          +V+L   S  D  L A + AC+
Sbjct: 330 HGHAHKAIHYFSQMVRL-GFSPRDITLTAVLSACS 363


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/520 (41%), Positives = 302/520 (58%), Gaps = 31/520 (5%)

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA-CERVKALNKCQ 109
           P T   NS++R  +    P  A+ +   M  A   R + FT    LK  C    AL   +
Sbjct: 88  PSTFQCNSILRVLSD---PSDALRFLRRM-RALGRRGNAFTLAILLKPRC----ALAHAR 139

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           +LH  V+  G+ R  +++T+LM  YA  G  + AR +F  MP RD V+WN +ISC  +  
Sbjct: 140 QLHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNR 199

Query: 170 FHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227
              +ALKL+E MR  D G   D  T + LL +C  +GAL+ G  +   A E G+   + V
Sbjct: 200 RTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKV 259

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
            N+L+ MY++CG +D A+ VF    ++ V++W++MI G   +G GD+AIS F++M+ +  
Sbjct: 260 RNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDV 319

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            PD  TF G+L  CSH GLV+EG  +F MM   Y LKP ++HYGC+VDL GRAG L++A 
Sbjct: 320 APDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAY 379

Query: 348 EVINTSS--PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           E++        D  +WRTLLG+C+IH +V++GE  + NL++L+A  AGDYVLL   YA  
Sbjct: 380 ELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLNTYAAV 439

Query: 406 KDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRA 465
            +   V+  RKL++  GI+TTPG + +E   +V++F+ DD +HP    IY KL EI  + 
Sbjct: 440 GEWSKVSEVRKLMQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEKLNEINKQL 499

Query: 466 KFIGYTKDESLVAVSGSSSEDFLEKSSA--YHSEKLAIAFGLATTPDGTSLRIVKNLR-- 521
           +  GY  + S    S     D   K SA  YHSEKLAIAF L  TP    +R+ KNLR  
Sbjct: 500 RIAGYVPNVS----SELHDLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLAKNLRVC 555

Query: 522 ----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                     S  Y+R +IVRDR R+HHF+ G CSC DYW
Sbjct: 556 VDCHNFTKVFSGIYNRLVIVRDRTRFHHFQGGKCSCNDYW 595


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/606 (36%), Positives = 333/606 (54%), Gaps = 71/606 (11%)

Query: 10  VGLNKARQAHEIHGEWLLNS--------------YAIS--VSSSLSYAQLLFNQIQNPQT 53
            GLN  +  H++H   LL                YA S  + SS+S    +FN I  P +
Sbjct: 81  TGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVS----VFNGIGEPSS 136

Query: 54  QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
             +NS+IRA+A+     + +  Y  M     +  D FTF F LK+   + ++   + +HG
Sbjct: 137 LLFNSMIRAYARYGFAERTVATYFSMHSWGFTG-DYFTFPFVLKSSVELLSVWMGKCVHG 195

Query: 114 FVIRSGYERCVVVSTNL-------------------------------MRGYAANGVIEA 142
            ++R G +  + V+T+L                               + GY  +G I+A
Sbjct: 196 LILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDA 255

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSC 200
           A ++F+ MP R++VSW ++IS Y+Q+    +AL L++ M  ED G+  +  T++ +L +C
Sbjct: 256 ALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPAC 315

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLS 258
           A +  L  G  +H +AC MG   +  V  AL  MYAKCG+L  A   F ++ +  +++++
Sbjct: 316 AQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIA 375

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WN+MI  Y  +G G +A+S F++M+ AG  PD ITF GLL GCSH GLV+ G++YF+ M 
Sbjct: 376 WNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMS 435

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIG 377
           + Y++ P ++HY C+ DL GRAG+L +A +++     P+ P +W +LL +C+ HRN+E+ 
Sbjct: 436 TTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMA 495

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
           E A + L  LE  + G+YVLL+ +YA     + V + R ++KS G K +PG SWIEI  +
Sbjct: 496 ETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGK 555

Query: 438 VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSE 497
            H F+  D SHP    IY  LE +  + K  GY  D S V    S  E   E +   HSE
Sbjct: 556 AHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEK--EFNLIAHSE 613

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLA+AFG+  TP  T LR+ KNLR            S  Y R++IVRD  R+HHF+ G C
Sbjct: 614 KLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCC 673

Query: 546 SCGDYW 551
           SCGDYW
Sbjct: 674 SCGDYW 679



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 125/258 (48%), Gaps = 6/258 (2%)

Query: 63  FAQSLSPLQAIFYYNHML--MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
           F  S+SPL       ++L  +++   P   ++    +    +  L    ++H  ++  G 
Sbjct: 42  FKCSISPLTISATLQNLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGL 101

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           +   +V + ++  YA++G I+++ SVF+ + E   + +NS+I  Y +  F    +  Y  
Sbjct: 102 QPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFS 161

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M       D FT   +L S   + ++ MG  +H +   +G    +YV  +L+ +Y KCG 
Sbjct: 162 MHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGE 221

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           ++ A  VF  M  RDV SWN+++ GY   G  D A++ F++M         +++  ++ G
Sbjct: 222 INDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNI----VSWTTMISG 277

Query: 301 CSHQGLVEEGVEYFHMMV 318
            S  GL ++ +  F  MV
Sbjct: 278 YSQSGLAQQALSLFDEMV 295


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/565 (38%), Positives = 315/565 (55%), Gaps = 58/565 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L ++  LF++  NP    W  +I A A       A+ YY+ ML   + +P+ FT +  LK
Sbjct: 71  LHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPI-QPNAFTLSSLLK 129

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC     L+  + +H   I+ G    + VST L+  YA  G + +A+ +FD MPER LVS
Sbjct: 130 AC----TLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVS 185

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDV-----GLDGF--------------------- 191
           + ++++CY +     EA  L+E M  +DV      +DG+                     
Sbjct: 186 YTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMG 245

Query: 192 ------------TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
                       T+V +LSSC  VGAL  G ++H      G   +V VG ALVDMY KCG
Sbjct: 246 GNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCG 305

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
           +L+ A  VF  M  +DV++WNSMI+GYG+HG  DEA+  F +M   G  P  ITF+ +L 
Sbjct: 306 SLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLT 365

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDP 358
            C+H GLV +G E F  M   Y ++P ++HYGC+V+L GRAG++++A +++ +     DP
Sbjct: 366 ACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDP 425

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
           VLW TLL +C+IH NV +GE   + LV    AS+G YVLL+ +YA  ++  GVA+ R ++
Sbjct: 426 VLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMM 485

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
           K +G++  PG S IE+ N+VH+FV  D+ HP +  IY  LE++    K   YT      A
Sbjct: 486 KGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTD--A 543

Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
           V     E   E+S   HSEKLA+AFGL +T  G +++IVKNLR            S    
Sbjct: 544 VLHDIGEQEKEQSLEVHSEKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISG 603

Query: 527 RDLIVRDRVRYHHFRDGLCSCGDYW 551
           R +I+RDR R+HHF +G CSC DYW
Sbjct: 604 RKIIMRDRNRFHHFENGSCSCRDYW 628



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 132/307 (42%), Gaps = 43/307 (14%)

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
           K+ +   ++H  ++R G     +++  L R YA+ G +  + ++F   P  ++  W  II
Sbjct: 34  KSTHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHII 93

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           + +        AL  Y +M    +  + FTL  LL +C     L+    +H  A + G  
Sbjct: 94  NAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKAC----TLHPARAVHSHAIKFGLS 149

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR---------------------------- 254
             +YV   LVD YA+ G++ SA  +F  M +R                            
Sbjct: 150 SHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGM 209

Query: 255 ---DVLSWNSMIVGYGVHGRGDEAISFFKQ-------MLMAGFHPDSITFLGLLCGCSHQ 304
              DV+ WN MI GY  HG  +EA+ FF++              P+ IT + +L  C   
Sbjct: 210 GMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQV 269

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364
           G +E G ++ H  V    +K  ++    LVD+Y + G LE A +V +     D V W ++
Sbjct: 270 GALECG-KWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSM 328

Query: 365 LGSCKIH 371
           +    IH
Sbjct: 329 IMGYGIH 335


>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
 gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
          Length = 601

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/533 (39%), Positives = 308/533 (57%), Gaps = 38/533 (7%)

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT----------------FTFTF 94
           P  +A   L+   A +   L + F  N +L  SL  PD                 F+ + 
Sbjct: 75  PSHRALPVLLHHLALAPETLPSTFRLNAILR-SLRGPDALRFLRRARALGRRGNAFSLSI 133

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L  C   +AL   ++LH  V+  G+    +++T+L+  YAA G  ++AR VFD MP RD
Sbjct: 134 VLGHC---RALAHARQLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVFDEMPVRD 190

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFL 212
            ++WN +I+CYT+     +ALKL++ MR  + G   D  T + LL +C  +GAL+ G  +
Sbjct: 191 TIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKV 250

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
              A + G+   + V N+L+ MY KCG +D A+ VF    K+ V++W++MI G   +G G
Sbjct: 251 WEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASNGFG 310

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            +AIS F++M  +G  PD  TF G+L  CSH GLV+EG ++F +M   Y LKP + HYGC
Sbjct: 311 KDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHYGC 370

Query: 333 LVDLYGRAGKLEKALEVI--NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           +VDL GRAG L++A E++  +     D  +WRTLLG+C+IH ++++GE  + +L++L+A 
Sbjct: 371 MVDLMGRAGLLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINHLIELKAQ 430

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
            AGDYVLL   YA  +D   VA  RKL+K  GI+TTPG + +E+  ++H+F+  D SHP 
Sbjct: 431 QAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKGIQTTPGCTTVELNGEIHEFIAADASHPR 490

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
              IY KL+EI    +  GY  + S   +    SE   E + AYHSEKLAIAF L  TP 
Sbjct: 491 KAEIYEKLDEINKHLRIAGYVPNVS-SELHDLDSEG-KECALAYHSEKLAIAFALLVTPQ 548

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              +R+ KNLR            S  Y R +IVRDR R+HHF++  CSC DYW
Sbjct: 549 HRPIRLAKNLRVCVDCHNFTKVFSGVYHRLVIVRDRTRFHHFKEFQCSCNDYW 601


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/544 (39%), Positives = 311/544 (57%), Gaps = 19/544 (3%)

Query: 26  LLNSYAIS-VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
            L+  A+S +   ++Y+  +F+Q  NP     N++IRAF+ S +P +    +  +   S 
Sbjct: 49  FLSRLALSLIPRDINYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSS 108

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
              +  + +F LK C +   L    ++HG +   G+    ++ T LM  Y+       A 
Sbjct: 109 LPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDAC 168

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL---DGFTLVCLLSSCA 201
            VFD +P+RD VSWN + SCY +     + L L+++M+ +  G    DG T +  L +CA
Sbjct: 169 KVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACA 228

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
           ++GAL+ G  +H    E G   ++ + N LV MY++CG++D A+ VF  MR+R+V+SW +
Sbjct: 229 NLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTA 288

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS-R 320
           +I G  ++G G EAI  F +ML  G  P+  T  GLL  CSH GLV EG+ +F  M S  
Sbjct: 289 LISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGE 348

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEI 379
           + +KP + HYGC+VDL GRA  L+KA  +I +     D  +WRTLLG+C++H +VE+GE 
Sbjct: 349 FKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGER 408

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
            + +L++L+A  AGDYVLL   Y+     E V   R L+K   I T PG S IE+   VH
Sbjct: 409 VISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVH 468

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
           +F+VDD SHP  + IY+ L EI  + K  GY   E    +    SE+    +  YHSEKL
Sbjct: 469 EFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVA-EITSELHNLESEEEKGYALRYHSEKL 527

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           AIAFG+  TP GT++R+ KNLR            S  Y R +IVRDR R+HHF+ G CSC
Sbjct: 528 AIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSC 587

Query: 548 GDYW 551
            D+W
Sbjct: 588 NDFW 591


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/539 (38%), Positives = 309/539 (57%), Gaps = 19/539 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ YA     SL  A  +F +I      AWN++I A+ Q      A+  +  +L   + 
Sbjct: 454 LLSMYA--KCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGI- 510

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +P++ TFT  L  C+   +L   + +H  ++++G E  + VS  L+  +   G + +A++
Sbjct: 511 KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKN 570

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F++MP+RDLVSWN+II+ + Q   +  A   ++ M+   +  D  T   LL++CA   A
Sbjct: 571 LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEA 630

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  LH +  E  F   V VG  L+ MY KCG+++ A  VF ++ K++V SW SMI G
Sbjct: 631 LTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAG 690

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y  HGRG EA+  F QM   G  PD ITF+G L  C+H GL+EEG+ +F  M   +N++P
Sbjct: 691 YAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEP 749

Query: 326 GIKHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            ++HYGC+VDL+GRAG L +A+E +I      D  +W  LLG+C++H NVE+ E A +  
Sbjct: 750 RMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKK 809

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           ++L+    G +V+L+ IYA     + VA+ RK++   G+   PG SWIE+  +VH F  D
Sbjct: 810 LELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSD 869

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           DK+HP  + I+ +LE +    + +GY  D   V      +E   E++  YHSE+LAI +G
Sbjct: 870 DKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEK--EQALFYHSERLAITYG 927

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L  TP  T + I KNLR            S    R +I RD  R+HHF+DG+CSCGD+W
Sbjct: 928 LLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 185/341 (54%), Gaps = 6/341 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA    +++S A+ +F+ ++     +WN L+  + Q     +A   +  M+  S+ 
Sbjct: 151 LINMYA-KCGNTIS-AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSV- 207

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +PD  TF   L AC   + ++K +EL+  ++++G++  + V T L+  +   G I  A  
Sbjct: 208 KPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATK 267

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFDN+P RDLV+W S+I+   +     +A  L++RM  E V  D    V LL +C H  A
Sbjct: 268 VFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEA 327

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H    E+G+   +YVG A++ MY KCG+++ A  VF  ++ R+V+SW +MI G
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF-HMMVSRYNLK 324
           +  HGR DEA  FF +M+ +G  P+ +TF+ +L  CS    ++ G +   H++ + Y   
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             ++    L+ +Y + G L+ A  V    S  + V W  ++
Sbjct: 448 DRVR--TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMI 486



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 189/371 (50%), Gaps = 8/371 (2%)

Query: 2   GLKKHARYVGLNKARQAHEIH-GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           G K HAR   + +     EI+ G  +L+ Y  +   S+  A  +F+ ++     +W ++I
Sbjct: 331 GKKVHAR---MKEVGWDTEIYVGTAILSMY--TKCGSMEDALEVFDLVKGRNVVSWTAMI 385

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             FAQ     +A  ++N M+ + +  P+  TF   L AC    AL + Q++   +I +GY
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIE-PNRVTFMSILGACSSPSALKRGQQIQDHIIEAGY 444

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
                V T L+  YA  G ++ A  VF+ + ++++V+WN++I+ Y Q   +  AL  ++ 
Sbjct: 445 GSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQA 504

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           +  E +  +  T   +L+ C    +L +G ++H +  + G    ++V NALV M+  CG+
Sbjct: 505 LLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGD 564

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           L SA  +F+ M KRD++SWN++I G+  HG+   A  +FK M  +G  PD ITF GLL  
Sbjct: 565 LMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNA 624

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           C+    + EG    H +++       +     L+ +Y + G +E A +V +     +   
Sbjct: 625 CASPEALTEG-RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYS 683

Query: 361 WRTLLGSCKIH 371
           W +++     H
Sbjct: 684 WTSMIAGYAQH 694



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 151/285 (52%), Gaps = 1/285 (0%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T++  L+ C + K L   + ++  + +SG +  + +   L+  YA  G   +A+ +FD+M
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
            E+D+ SWN ++  Y Q   + EA KL+E+M  + V  D  T V +L++CA    ++ G 
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            L+ +  + G+   ++VG AL++M+ KCG++  A  VF  +  RD+++W SMI G   HG
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHG 291

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
           R  +A + F++M   G  PD + F+ LL  C+H   +E+G +  H  +        I   
Sbjct: 292 RFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQG-KKVHARMKEVGWDTEIYVG 350

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
             ++ +Y + G +E ALEV +     + V W  ++     H  ++
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRID 395



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 158/326 (48%), Gaps = 2/326 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  +F+ +       W S+I   A+     QA   +  M    + +PD   F   L+AC 
Sbjct: 265 ATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV-QPDKVAFVSLLRACN 323

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             +AL + +++H  +   G++  + V T ++  Y   G +E A  VFD +  R++VSW +
Sbjct: 324 HPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTA 383

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+ + Q     EA   + +M    +  +  T + +L +C+   AL  G  +     E G
Sbjct: 384 MIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +     V  AL+ MYAKCG+L  A  VF ++ K++V++WN+MI  Y  H + D A++ F+
Sbjct: 444 YGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQ 503

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            +L  G  P+S TF  +L  C     +E G ++ H ++ +  L+  +     LV ++   
Sbjct: 504 ALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNC 562

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLG 366
           G L  A  + N     D V W T++ 
Sbjct: 563 GDLMSAKNLFNDMPKRDLVSWNTIIA 588



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 110/219 (50%), Gaps = 1/219 (0%)

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           +D    N++++  ++A    EA+++ ER+    + +   T   LL  C     L  G  +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           +    + G    +++ N L++MYAKCGN  SA  +F  MR++DV SWN ++ GY  HG  
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           +EA    +QM+     PD  TF+ +L  C+    V++G E +++++ +      +     
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL-KAGWDTDLFVGTA 251

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           L++++ + G +  A +V +     D V W +++     H
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/513 (39%), Positives = 302/513 (58%), Gaps = 16/513 (3%)

Query: 52  QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111
            +Q  NS+IR +      L +++ +  M   S+  PD+ TF   LKA  ++      + +
Sbjct: 53  NSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSI-LPDSSTFPAVLKATAQLCDTGVGKMI 111

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           HG VI+ G+   V  ST L+  Y     I  A  +FD MPER+ V+WN++I+ YT     
Sbjct: 112 HGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKF 171

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
           ++A+  +  M  +       T+V +LS+C+H+GA N G ++H          +V+VG AL
Sbjct: 172 VKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTAL 231

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           +DMYAKCG +     VF  +R+++V +WN +I GY ++G+GD A+  F +MLM  F PD 
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDE 291

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
           +TFLG+LC C HQGLV EG   F  M  ++ L+P I+HYGC+VDL GRAG LE+ALE+I 
Sbjct: 292 VTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQ 351

Query: 352 TSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410
           + S   DP++WR LL +C++H N ++GE  +K L++LE  +  +YVLL+ IY+  +    
Sbjct: 352 SMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAE 411

Query: 411 VARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY 470
           V + R ++   GI+  PG S IEI N V++FV  +   P+ + IY++L+ ++ + K  GY
Sbjct: 412 VGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGY 471

Query: 471 TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
                +        E   E S  YHSEKLA+AFGL  +P   +LRIVKNLR         
Sbjct: 472 VTGTDMALYDIEKEEK--EHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFF 529

Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              S+ Y R ++VRDR R+HHF +G CSC DYW
Sbjct: 530 KVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/599 (37%), Positives = 318/599 (53%), Gaps = 63/599 (10%)

Query: 13  NKARQAHEIHGEWL-----LNSYAIS------VSSS----LSYAQLLFNQIQNPQTQAWN 57
           +K  +  +IH   L      +SYAI+      +SS+    L YAQ++F+    P T  WN
Sbjct: 54  SKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWN 113

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
            +IR F+ S  P +++  Y  ML  S    + +TF   LKAC  + AL +  ++H  + +
Sbjct: 114 LMIRGFSCSDEPERSLLLYQRMLCCSAPH-NAYTFPSLLKACSNLSALEETTQIHAQITK 172

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII--------------- 162
            GYE  V    +L+  YAA G  + A  +FD +P+ D VSWNS+I               
Sbjct: 173 LGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTL 232

Query: 163 ----------------SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
                           S Y QA  H EAL+L+  M+  DV  D  +L   LS+CA +GAL
Sbjct: 233 FRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGAL 292

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
             G ++H    +        +G  L+DMYAKCG++  A  VF  ++++ V +W ++I GY
Sbjct: 293 EQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGY 352

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
             HG G EAIS F +M   G  P+ ITF  +L  CS+ GLVEEG   F+ M   YNLKP 
Sbjct: 353 AYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPT 412

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNL 384
           I+HYGC+VDL  RAG L++A   I    P  P  V+W  LL +C+IH+N+E+GE   + L
Sbjct: 413 IEHYGCVVDLLSRAGLLDEAKRFIQ-EMPLKPNAVIWGALLKACRIHKNIELGEEIGEIL 471

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           + ++    G YV  A I+A  K  +  A TR+L+K  G+   PG S I +    H+F+  
Sbjct: 472 IAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAG 531

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D+SHP+ + I  K + +  + +  GY   E    +     +D  E     HSEKLAI +G
Sbjct: 532 DRSHPEIEKIQSKWKIMRRKLEENGYV-PELEDMLLDLVDDDERETIVHQHSEKLAITYG 590

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L  T  GT++RI+KNLR            S  Y RD+++RDR R+HHFRDG CSCGDYW
Sbjct: 591 LIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 155/363 (42%), Gaps = 54/363 (14%)

Query: 101 RVKALNKCQELHGFVIRSG----------YERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           R     + +++H  ++++G          +  C + ST       ++  +  A+ VFD  
Sbjct: 52  RCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISST-------SSDFLPYAQIVFDGF 104

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
              D   WN +I  ++ +     +L LY+RM       + +T   LL +C+++ AL    
Sbjct: 105 DRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETT 164

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H    ++G+   VY  N+L++ YA  GN   A  +F R+ K D +SWNS+I GY   G
Sbjct: 165 QIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAG 224

Query: 271 RGDEAISFFKQM---------------LMAGFH----------------PDSITFLGLLC 299
           + D A++ F++M               + AG H                PD+++    L 
Sbjct: 225 KMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALS 284

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-LVDLYGRAGKLEKALEVINTSSPSDP 358
            C+  G +E+G ++ H  +++  ++      GC L+D+Y + G + +ALEV         
Sbjct: 285 ACAQLGALEQG-KWIHSYLTKTRIRMD-SVLGCVLIDMYAKCGDMGEALEVFKNIQRKSV 342

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
             W  L+     H +   G  A+   ++++       V+  T         G+    KLI
Sbjct: 343 QAWTALISGYAYHGH---GREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLI 399

Query: 419 KSN 421
             N
Sbjct: 400 FYN 402


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/513 (39%), Positives = 302/513 (58%), Gaps = 16/513 (3%)

Query: 52  QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111
            +Q  NS+IR +      L +++ +  M   S+  PD+ TF   LKA  ++      + +
Sbjct: 53  NSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSI-LPDSSTFPAVLKATAQLCDTGVGKMI 111

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           HG VI+ G+   V  ST L+  Y     I  A  +FD MPER+ V+WN++I+ YT     
Sbjct: 112 HGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKF 171

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
           ++A+  +  M  +       T+V +LS+C+H+GA N G ++H          +V+VG AL
Sbjct: 172 VKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTAL 231

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           +DMYAKCG +     VF  +R+++V +WN +I GY ++G+GD A+  F +MLM  F PD 
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDE 291

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
           +TFLG+LC C HQGLV EG   F  M  ++ L+P I+HYGC+VDL GRAG LE+ALE+I 
Sbjct: 292 VTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQ 351

Query: 352 TSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410
           + S   DP++WR LL +C++H N ++GE  +K L++LE  +  +YVLL+ IY+  +    
Sbjct: 352 SMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAE 411

Query: 411 VARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY 470
           V + R ++   GI+  PG S IEI N V++FV  +   P+ + IY++L+ ++ + K  GY
Sbjct: 412 VGKLRGMMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGY 471

Query: 471 TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
                +        E   E S  YHSEKLA+AFGL  +P   +LRIVKNLR         
Sbjct: 472 VTGTDMALYDIEKEEK--EHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFF 529

Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              S+ Y R ++VRDR R+HHF +G CSC DYW
Sbjct: 530 KVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/539 (38%), Positives = 309/539 (57%), Gaps = 19/539 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ YA     SL  A  +F +I      AWN++I A+ Q      A+  +  +L   + 
Sbjct: 454 LLSMYA--KCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGI- 510

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +P++ TFT  L  C+   +L   + +H  ++++G E  + VS  L+  +   G + +A++
Sbjct: 511 KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKN 570

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F++MP+RDLVSWN+II+ + Q   +  A   ++ M+   +  D  T   LL++CA   A
Sbjct: 571 LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEA 630

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  LH +  E  F   V VG  L+ MY KCG+++ A  VF ++ K++V SW SMI G
Sbjct: 631 LTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITG 690

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y  HGRG EA+  F QM   G  PD ITF+G L  C+H GL+EEG+ +F  M   +N++P
Sbjct: 691 YAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEP 749

Query: 326 GIKHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            ++HYGC+VDL+GRAG L +A+E +I      D  +W  LLG+C++H NVE+ E A +  
Sbjct: 750 RMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKK 809

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           ++L+    G +V+L+ IYA     + VA+ RK++   G+   PG SWIE+  +VH F  D
Sbjct: 810 LELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSD 869

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           DK+HP  + I+ +LE +    + +GY  D   V      +E   E++  YHSE+LAI +G
Sbjct: 870 DKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEK--EQALFYHSERLAITYG 927

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L  TP  T + I KNLR            S    R +I RD  R+HHF+DG+CSCGD+W
Sbjct: 928 LLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 185/341 (54%), Gaps = 6/341 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA    +++S A+ +F+ ++     +WN L+  + Q     +A   +  M+  S+ 
Sbjct: 151 LINMYA-KCGNTIS-AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSV- 207

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +PD  TF   L AC   + ++K +EL+  ++++G++  + V T L+  +   G I  A  
Sbjct: 208 KPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATK 267

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFDN+P RDLV+W S+I+   +     +A  L++RM  E V  D    V LL +C H  A
Sbjct: 268 VFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEA 327

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H    E+G+   +YVG A++ MY KCG+++ A  VF  ++ R+V+SW +MI G
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF-HMMVSRYNLK 324
           +  HGR DEA  FF +M+ +G  P+ +TF+ +L  CS    ++ G +   H++ + Y   
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             ++    L+ +Y + G L+ A  V    S  + V W  ++
Sbjct: 448 DRVR--TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMI 486



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 188/365 (51%), Gaps = 8/365 (2%)

Query: 2   GLKKHARYVGLNKARQAHEIH-GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           G K HAR   + +     EI+ G  +L+ Y  +   S+  A  +F+ ++     +W ++I
Sbjct: 331 GKKVHAR---MKEVGWDTEIYVGTAILSMY--TKCGSMEDALEVFDLVKGRNVVSWTAMI 385

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             FAQ     +A  ++N M+ + +  P+  TF   L AC    AL + Q++   +I +GY
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGI-EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGY 444

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
                V T L+  YA  G ++ A  VF+ + ++++V+WN++I+ Y Q   +  AL  ++ 
Sbjct: 445 GSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQA 504

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           +  E +  +  T   +L+ C    +L +G ++H +  + G    ++V NALV M+  CG+
Sbjct: 505 LLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGD 564

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           L SA  +F+ M KRD++SWN++I G+  HG+   A  +FK M  +G  PD ITF GLL  
Sbjct: 565 LMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNA 624

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           C+    + EG    H +++       +     L+ +Y + G +E A +V +     +   
Sbjct: 625 CASPEALTEG-RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYS 683

Query: 361 WRTLL 365
           W +++
Sbjct: 684 WTSMI 688



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 151/285 (52%), Gaps = 1/285 (0%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T++  L+ C + K L   + ++  + +SG +  + +   L+  YA  G   +A+ +FD+M
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
            E+D+ SWN ++  Y Q   + EA KL+E+M  + V  D  T V +L++CA    ++ G 
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            L+ +  + G+   ++VG AL++M+ KCG++  A  VF  +  RD+++W SMI G   HG
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHG 291

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
           R  +A + F++M   G  PD + F+ LL  C+H   +E+G +  H  +        I   
Sbjct: 292 RFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQG-KKVHARMKEVGWDTEIYVG 350

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
             ++ +Y + G +E ALEV +     + V W  ++     H  ++
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRID 395



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 158/326 (48%), Gaps = 2/326 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  +F+ +       W S+I   A+     QA   +  M    + +PD   F   L+AC 
Sbjct: 265 ATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV-QPDKVAFVSLLRACN 323

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             +AL + +++H  +   G++  + V T ++  Y   G +E A  VFD +  R++VSW +
Sbjct: 324 HPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTA 383

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+ + Q     EA   + +M    +  +  T + +L +C+   AL  G  +     E G
Sbjct: 384 MIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +     V  AL+ MYAKCG+L  A  VF ++ K++V++WN+MI  Y  H + D A++ F+
Sbjct: 444 YGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQ 503

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            +L  G  P+S TF  +L  C     +E G ++ H ++ +  L+  +     LV ++   
Sbjct: 504 ALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNC 562

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLG 366
           G L  A  + N     D V W T++ 
Sbjct: 563 GDLMSAKNLFNDMPKRDLVSWNTIIA 588



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 110/219 (50%), Gaps = 1/219 (0%)

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           +D    N++++  ++A    EA+++ ER+    + +   T   LL  C     L  G  +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           +    + G    +++ N L++MYAKCGN  SA  +F  MR++DV SWN ++ GY  HG  
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           +EA    +QM+     PD  TF+ +L  C+    V++G E +++++ +      +     
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL-KAGWDTDLFVGTA 251

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           L++++ + G +  A +V +     D V W +++     H
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/542 (39%), Positives = 312/542 (57%), Gaps = 23/542 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LLN YA      L YA+ LF+++ +     W +LI  ++Q   P  A+     ML   L 
Sbjct: 56  LLNLYA--KCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGL- 112

Query: 86  RPDTFTFTFTLKACERVKALNKCQ--ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
           +P+ FT    LKA   V + +  Q  +LHG  +R GY+  V VS  ++  YA    +E A
Sbjct: 113 KPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEA 172

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           + +FD M  ++ VSWN++I+ Y +     +A  L+  M  E+V    FT   +L +CA +
Sbjct: 173 QLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASM 232

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           G+L  G ++H +  + G     +VGN L+DMYAK G+++ A  VF R+ KRDV+SWNSM+
Sbjct: 233 GSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSML 292

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            GY  HG G  A+  F++ML     P+ ITFL +L  CSH GL++EG  YF MM  +YN+
Sbjct: 293 TGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMM-KKYNV 351

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAM 381
           +P I HY  +VDL GRAG L++A++ I +  P  P   +W  LLG+C++H+N+E+G  A 
Sbjct: 352 EPQISHYVTMVDLLGRAGHLDRAIQFI-SEMPIKPTAAVWGALLGACRMHKNMELGGYAA 410

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           + + +L++   G +VLL  IYA        A+ RK++K +G+K  P  SW+E+ N+VH F
Sbjct: 411 ECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVF 470

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
           V DD +HP    I+   E+I  + K IGY  D S V +     E   E    YHSEKLA+
Sbjct: 471 VADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQER--EAKLQYHSEKLAL 528

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           AF L  TP G+++RI KN+R            S    R++IVRD  R+HHF DG CSC D
Sbjct: 529 AFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCED 588

Query: 550 YW 551
           YW
Sbjct: 589 YW 590



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 166/314 (52%), Gaps = 8/314 (2%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LK C  +  LN+ + +H  ++ S +   +V+   L+  YA  G +  AR +FD M  RD+
Sbjct: 22  LKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDV 81

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM--GIFLH 213
           V+W ++I+ Y+Q     +AL L   M    +  + FTL  LL + + VG+ ++  G  LH
Sbjct: 82  VTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLH 141

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            +    G+  +VYV  A++DMYA+C +L+ A  +F  M  ++ +SWN++I GY   G+GD
Sbjct: 142 GLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGD 201

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           +A   F  ML     P   T+  +LC C+  G +E+G ++ H ++ ++  K        L
Sbjct: 202 KAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQG-KWVHALMIKWGEKLVAFVGNTL 260

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAAS 391
           +D+Y ++G +E A +V +  +  D V W ++L     H    +G++A++   ++     +
Sbjct: 261 LDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQH---GLGKVALQRFEEMLRTRIA 317

Query: 392 AGDYVLLATIYACT 405
             D   L  + AC+
Sbjct: 318 PNDITFLCVLTACS 331



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 3/173 (1%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL  C H+  LN G  +H +     F + + + N L+++YAKCG+L  A  +F  M  RD
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE--EGVEY 313
           V++W ++I GY  H R  +A+    +ML  G  P+  T   LL   S  G  +  +G + 
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ- 139

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            H +  RY     +     ++D+Y R   LE+A  + +     + V W  L+ 
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIA 192


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/562 (35%), Positives = 322/562 (57%), Gaps = 24/562 (4%)

Query: 10  VGLNKARQAHEIHGEWLLNSY-------AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRA 62
           + L+K    H I    + +S+       A S +  +  A++LF +  N    AWN+++  
Sbjct: 440 LSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSG 498

Query: 63  FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER 122
           + QS    + +  +  ++     R D FT    LK C  + A+N+ +++H + I+SGY+ 
Sbjct: 499 YTQSHDGHKTLELFA-LMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDL 557

Query: 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182
            + VS+ ++  Y   G + AA+  FD++P  D V+W ++IS   +      AL ++ +MR
Sbjct: 558 DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMR 617

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
              V  D FT+  L  + + + AL  G  +H  A ++      +VG +LVDMYAKCG++D
Sbjct: 618 LMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSID 677

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A+C+F R+   ++ +WN+M+VG   HG G EA+  FKQM   G  PD +TF+G+L  CS
Sbjct: 678 DAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACS 737

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLW 361
           H GLV E  +Y   M   Y +KP I+HY CL D  GRAG +++A  +I++ S  +   ++
Sbjct: 738 HSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMY 797

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
           RTLL +C++  + E G+     L++LE   +  YVLL+ +YA     + +   R ++K +
Sbjct: 798 RTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGH 857

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
            +K  PG+SWIE+ N++H FVVDD+S+P  ++IY+K+++++   K  GY  +     V  
Sbjct: 858 KVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDV 917

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
              E   E++  YHSEKLA+AFGL +TP  T +R++KNLR            S  Y R++
Sbjct: 918 EEEEK--ERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREI 975

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           ++RD  R+H F+DG+CSCGDYW
Sbjct: 976 VLRDANRFHRFKDGICSCGDYW 997



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 142/293 (48%), Gaps = 10/293 (3%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D  TF   L    R+ +L   Q++H   ++ G +  + VS +L+  Y     I  AR+VF
Sbjct: 321 DQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVF 380

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG-AL 206
           +NM ERDL+SWNS+I+   Q+   +EA+ L+ ++    +  D +T+  +L + + +   L
Sbjct: 381 NNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGL 440

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
           ++   +H  A +   V   +V  AL+D Y++   +  A  +F R    D+++WN+M+ GY
Sbjct: 441 SLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGY 499

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKP 325
                G + +  F  M   G   D  T   +L  C     + +G + + + + S Y+L  
Sbjct: 500 TQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDL 559

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
            +     ++D+Y + G +  A    ++    D V W TL+  C     +E GE
Sbjct: 560 WVS--SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGC-----IENGE 605



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 96/195 (49%), Gaps = 7/195 (3%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L KC       +    ER +V   NL+  Y+  G +  AR VFD MPERDLVSWNSI++ 
Sbjct: 64  LGKCTHARILALEENPERFLV--NNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAA 121

Query: 165 YTQASFHL-----EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           Y Q+S  +     EA  L+  +R + V     TL  +L  C H G +      H  AC++
Sbjct: 122 YAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKI 181

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G     +V  ALV++Y K G +     +F  M  RDV+ WN M+  Y   G  +EAI   
Sbjct: 182 GLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 241

Query: 280 KQMLMAGFHPDSITF 294
                +G HP+ IT 
Sbjct: 242 SAFHTSGLHPNEITL 256



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 120/258 (46%), Gaps = 16/258 (6%)

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           +++S N I+S Y  A  +   LK +  M   D+  D  T + +L++   + +L +G  +H
Sbjct: 286 EIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVH 345

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            +A ++G    + V N+L++MY K   +  A  VF+ M +RD++SWNS+I G        
Sbjct: 346 CMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEV 405

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV---EYFHMMVSRYNLKPGIKHY 330
           EA+  F Q+L  G  PD  T   +L   S    + EG+   +  H+   + N        
Sbjct: 406 EAVCLFMQLLRCGLKPDHYTMTSVLKAASS---LPEGLSLSKQIHVHAIKTNNVADSFVS 462

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG----SCKIHRNVEIGEIAMKNLVQ 386
             L+D Y R   +++A EV+   +  D V W  ++     S   H+ +E+  +  K    
Sbjct: 463 TALIDAYSRNRCMKEA-EVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHK---- 517

Query: 387 LEAASAGDYVLLATIYAC 404
            +   + D+ L   +  C
Sbjct: 518 -QGERSDDFTLATVLKTC 534



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 183/434 (42%), Gaps = 52/434 (11%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           +G   HAR + L +  +   ++   L++ Y  S   SL+YA+ +F+++      +WNS++
Sbjct: 64  LGKCTHARILALEENPERFLVNN--LISMY--SKCGSLTYARRVFDKMPERDLVSWNSIL 119

Query: 61  RAFAQS----LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
            A+AQS    +  ++  F    +L   +      T +  LK C     +   +  HG+  
Sbjct: 120 AAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYAC 179

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
           + G +    V+  L+  Y   G ++  R +F+ MP RD+V WN ++  Y +  F  EA+ 
Sbjct: 180 KIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 239

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA---CEMGFVESVYVGNALVD 233
           L     F   GL             H   + + + L RI+    E G V+S   GN    
Sbjct: 240 LSS--AFHTSGL-------------HPNEITLRL-LSRISGDDSEAGQVKSFENGN---- 279

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
                   D++          +++S N ++ GY   G+    +  F  M+ +    D +T
Sbjct: 280 --------DASAV-------SEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVT 324

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F+ +L        +  G +  H M  +  L   +     L+++Y +  K+  A  V N  
Sbjct: 325 FILVLATAVRLDSLALG-QQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNM 383

Query: 354 SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
           S  D + W +++       ++E+  + +   +         Y + + + A +   EG++ 
Sbjct: 384 SERDLISWNSVIAGIA-QSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSL 442

Query: 414 TRKL----IKSNGI 423
           ++++    IK+N +
Sbjct: 443 SKQIHVHAIKTNNV 456


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/588 (36%), Positives = 326/588 (55%), Gaps = 64/588 (10%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSP-LQAIFYYNHMLMASL 84
           +L   A S    + YA  +F+Q+      AWN++IRA A++    L A+  +  ML  + 
Sbjct: 53  ILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEAT 112

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR------------ 132
             P+ FTF   LKAC  +  L + +++HG +++ G      V TNL+R            
Sbjct: 113 VEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDAN 172

Query: 133 -----------------------------------GYAANGVIEAARSVFDNMPERDLVS 157
                                              GYA  G ++AAR +FD M +R +VS
Sbjct: 173 VLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVS 232

Query: 158 WNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           WN +IS Y Q  F+ EA++++ RM +  DV  +  TLV +L + + +G L +G ++H  A
Sbjct: 233 WNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYA 292

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            +        +G+ALVDMYAKCG+++ A  VF R+ + +V++WN++I G  +HG+ ++  
Sbjct: 293 EKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIF 352

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           ++  +M   G  P  +T++ +L  CSH GLV+EG  +F+ MV+   LKP I+HYGC+VDL
Sbjct: 353 NYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDL 412

Query: 337 YGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GRAG LE+A E+I N     D V+W+ LLG+ K+H+N++IG  A + L+Q+    +G Y
Sbjct: 413 LGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAY 472

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V L+ +YA + + +GVA  R ++K   I+  PG SWIEI   +H+F+V+D SH  A  I+
Sbjct: 473 VALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIH 532

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
             LEEI ++    G+  D + V +     E   E    YHSEK+A+AFGL +TP  T L 
Sbjct: 533 SMLEEISNKLSLEGHMPDTTQVLL--KMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLC 590

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           IVKNLR            S  Y R +++RDR R+HHF  G CSC DYW
Sbjct: 591 IVKNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/520 (41%), Positives = 302/520 (58%), Gaps = 31/520 (5%)

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA-CERVKALNKCQ 109
           P T   NS++RA +    P  A+ +    + A   R + FT    LK  C    +L   +
Sbjct: 104 PSTFQCNSILRALSD---PSDALRFLCR-VRALGRRGNAFTLAILLKPRC----SLAHAR 155

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           +LH  V+  G+ R  +++T+LMR YA  G  + AR +FD MP RD V+WN +I+CY +  
Sbjct: 156 QLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNR 215

Query: 170 FHLEALKLYERMRFEDVG--LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227
              +ALKL+E MR +D     D  T + LL +C+ +GAL+ G  +   A E G+   + V
Sbjct: 216 RTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKV 275

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
            N+L+ MY +CG +D A+ VFS   ++ V++W +MI G   +G G++AIS F++M+ +  
Sbjct: 276 RNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDV 335

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            PD  TF G+L  CSH GLV+EG  +F MM   Y LKP ++HYGC+VDL GRAG L++A 
Sbjct: 336 APDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAY 395

Query: 348 EVINTSS--PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           E +        D  +WRTLLG+C+IH +V++GE  + NL++L+A  AGDYVLL   YA  
Sbjct: 396 EFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAV 455

Query: 406 KDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRA 465
            +   V+  RKL++  GI+TTPG + +E    VH+F+ DD +HP    IY  L EI  + 
Sbjct: 456 GEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQL 515

Query: 466 KFIGYTKDESLVAVSGSSSEDFLEKSSA--YHSEKLAIAFGLATTPDGTSLRIVKNLR-- 521
           +  GY  + S    S     D   K SA  YHSEKLAIAF L  TP    +R+ KNLR  
Sbjct: 516 RIAGYVPNVS----SELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVC 571

Query: 522 ----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                     S  Y R +IVRDR R+HHF+ G CSC DYW
Sbjct: 572 VDCHNFTKMFSAIYRRIVIVRDRTRFHHFQGGKCSCNDYW 611



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 4/237 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML-MASLSRPDTFTFTFTLKAC 99
           A+ LF+++      AWN LI  +A++     A+  +  M    S S PD  T    L+AC
Sbjct: 189 ARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQAC 248

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
             + AL+  +++  +    GY   + V  +L+  Y   G ++ A  VF   P++ +V+W 
Sbjct: 249 SSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWT 308

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACE 218
           ++IS      F  +A+ ++E M   DV  D  T   +LS+C+H G ++ G  F   + CE
Sbjct: 309 AMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCE 368

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGD 273
            G   +V     +VD+  + G LD A+   +   K   D   W +++    +HG  D
Sbjct: 369 YGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVD 425


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/520 (41%), Positives = 302/520 (58%), Gaps = 31/520 (5%)

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA-CERVKALNKCQ 109
           P T   NS++RA +    P  A+ +    + A   R + FT    LK  C    +L   +
Sbjct: 90  PSTFQCNSILRALSD---PSDALRFLCR-VRALGRRGNAFTLAILLKPRC----SLAHAR 141

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           +LH  V+  G+ R  +++T+LMR YA  G  + AR +FD MP RD V+WN +I+CY +  
Sbjct: 142 QLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNR 201

Query: 170 FHLEALKLYERMRFEDVG--LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227
              +ALKL+E MR +D     D  T + LL +C+ +GAL+ G  +   A E G+   + V
Sbjct: 202 RTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKV 261

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
            N+L+ MY +CG +D A+ VFS   ++ V++W +MI G   +G G++AIS F++M+ +  
Sbjct: 262 RNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDV 321

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            PD  TF G+L  CSH GLV+EG  +F MM   Y LKP ++HYGC+VDL GRAG L++A 
Sbjct: 322 APDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAY 381

Query: 348 EVINTS--SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           E +        D  +WRTLLG+C+IH +V++GE  + NL++L+A  AGDYVLL   YA  
Sbjct: 382 EFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAV 441

Query: 406 KDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRA 465
            +   V+  RKL++  GI+TTPG + +E    VH+F+ DD +HP    IY  L EI  + 
Sbjct: 442 GEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQL 501

Query: 466 KFIGYTKDESLVAVSGSSSEDFLEKSSA--YHSEKLAIAFGLATTPDGTSLRIVKNLR-- 521
           +  GY  + S    S     D   K SA  YHSEKLAIAF L  TP    +R+ KNLR  
Sbjct: 502 RIAGYVPNVS----SELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVC 557

Query: 522 ----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                     S  Y R +IVRDR R+HHF+ G CSC DYW
Sbjct: 558 VDCHNFTKMFSAIYRRIVIVRDRTRFHHFQGGKCSCNDYW 597



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 4/237 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML-MASLSRPDTFTFTFTLKAC 99
           A+ LF+++      AWN LI  +A++     A+  +  M    S S PD  T    L+AC
Sbjct: 175 ARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQAC 234

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
             + AL+  +++  +    GY   + V  +L+  Y   G ++ A  VF   P++ +V+W 
Sbjct: 235 SSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWT 294

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACE 218
           ++IS      F  +A+ ++E M   DV  D  T   +LS+C+H G ++ G  F   + CE
Sbjct: 295 AMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCE 354

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGD 273
            G   +V     +VD+  + G LD A+   +   K   D   W +++    +HG  D
Sbjct: 355 YGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVD 411


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/548 (38%), Positives = 318/548 (58%), Gaps = 18/548 (3%)

Query: 17  QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYY 76
           Q+ E+     +  YA     SL YA+ +F  +++    +WN+LI    Q+  P +A+  Y
Sbjct: 433 QSDELVANAFVAGYA--KCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLY 490

Query: 77  NHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136
             M  + L  PD FT    L AC R+K+L+  +E+HG ++R+G+E    +  +L+  Y  
Sbjct: 491 LLMRGSGL-EPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQ 549

Query: 137 NGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCL 196
            G I  A+  FDNM E++LV WN++I+ ++Q  F  +AL ++ +M    +  D  +++  
Sbjct: 550 CGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGA 609

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           L +C+ V AL +G  LH  A +    E  +V  +L+DMYAKCG ++ +  +F R+  +  
Sbjct: 610 LGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGE 669

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           ++WN +I GYG+HG G +AI  FK M  AGF PDS+TF+ LL  C+H GLV EG+EY   
Sbjct: 670 VTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQ 729

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVE 375
           M S + +KP ++HY C+VD+ GRAG+L +ALE++N      D  +W +LL SC+ +R+++
Sbjct: 730 MQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLD 789

Query: 376 IGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIG 435
           IGE     L++L    A +YVL++  YA     + V + R+ +K  G++   G SWIEIG
Sbjct: 790 IGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIG 849

Query: 436 NQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYH 495
            +V +F+V D+S   +  I +   E+  +   IGY  D S   V     ED   K    H
Sbjct: 850 GKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTS--CVLHELEEDEKIKILRNH 907

Query: 496 SEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDG 543
           SEKLAI+FGL  T  GT+LR+ KNLR            S    R++IVRD  R+HHF++G
Sbjct: 908 SEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNG 967

Query: 544 LCSCGDYW 551
            CSCGDYW
Sbjct: 968 FCSCGDYW 975



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 166/353 (47%), Gaps = 6/353 (1%)

Query: 23  GEWLLNSYAISVSSSLSY---AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM 79
           GE  +NS  + + S   Y   A++LF+        +WNS+I  +++      A      M
Sbjct: 332 GELKVNSSLLDMYSKCGYLCEARVLFDT-NEKNVISWNSMIGGYSKDRDFRGAFELLRKM 390

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANG 138
            M    + +  T    L  CE      K +E+HG+ +R G+ +   +V+   + GYA  G
Sbjct: 391 QMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCG 450

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
            +  A  VF  M  + + SWN++I  + Q  F  +AL LY  MR   +  D FT+  LLS
Sbjct: 451 SLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLS 510

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +CA + +L+ G  +H      GF    ++  +LV +Y +CG +  A   F  M +++++ 
Sbjct: 511 ACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVC 570

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WN+MI G+  +    +A+  F QML +   PD I+ +G L  CS    +  G E  H   
Sbjct: 571 WNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKE-LHCFA 629

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            + +L         L+D+Y + G +E++  + +       V W  L+    IH
Sbjct: 630 VKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIH 682



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 163/344 (47%), Gaps = 18/344 (5%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S+  S   + L+FN  +      WN+L+  + ++     A+F +  M+  +   PD FT 
Sbjct: 140 SICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTL 199

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              +KAC  V  +   + +HGF +++     V V   L+  Y   G +E+A  VFD MP+
Sbjct: 200 PCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQ 259

Query: 153 RDLVSWNSII-SCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMG 209
           R+LVSWNS++ +C     F  E+  L++ +   D GL  D  T+V ++  CA  G + +G
Sbjct: 260 RNLVSWNSVMYACLENGVFE-ESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLG 318

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
           +  H +A ++G    + V ++L+DMY+KCG L  A  +F    +++V+SWNSMI GY   
Sbjct: 319 MVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKD 377

Query: 270 GRGDEAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMM-VSRYNLKPGI 327
                A    ++M M      + +T L +L  C      EE +++  +  +  Y L+ G 
Sbjct: 378 RDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC------EEEIQFLKLKEIHGYALRHGF 431

Query: 328 KH-----YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
                      V  Y + G L  A  V           W  L+G
Sbjct: 432 IQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIG 475



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 3/175 (1%)

Query: 196 LLSSCAHVGALNMGIFLHR-IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
           LL  C     + +G  +H  I+    F   V +   LV MY+ C +   +  VF+  R++
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           ++  WN+++ GY  +    +A+  F +M+ +  F PD+ T   ++  C     V  G E 
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLG-EA 217

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            H    +  +   +     L+ +YG+ G +E A++V +     + V W +++ +C
Sbjct: 218 VHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYAC 272


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/566 (37%), Positives = 315/566 (55%), Gaps = 58/566 (10%)

Query: 39  SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           +Y+  +F+Q + P    +N++I     + S  ++I  Y+ M    LS PD+FTF F LKA
Sbjct: 59  NYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLS-PDSFTFPFLLKA 117

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER----- 153
           C R+       +LHG V+++G E    V+T+L+  Y   G I+ A  VFD++PE+     
Sbjct: 118 CARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAW 177

Query: 154 ---------------------------------DLVSWNSIISCYTQASFHLEALKLYER 180
                                            D+VSW+S+I  Y       EAL L+ +
Sbjct: 178 TAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFK 237

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M  E    D + +V +L +CA +GAL +G +   +     F+ +  +G AL+DMYAKCG 
Sbjct: 238 MLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGR 297

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           +DSA+ VF  MRK+D++ WN+ I G  + G    A   F QM  +G  PD  TF+GLLC 
Sbjct: 298 MDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCA 357

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPV 359
           C+H GLV+EG +YF+ M   + L P I+HYGC+VDL GRAG L++A +++ +    ++ +
Sbjct: 358 CTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAI 417

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
           +W  LLG C++HR+ ++ E  +K L+ LE +++G+YVLL+ IY+ +   E  A+ R ++ 
Sbjct: 418 VWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMS 477

Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDESLV 477
             GIK  PG+SWIE+   VH+F+V D SHP ++ IY KL E++   K  GY  T D  L 
Sbjct: 478 ERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLF 537

Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
            +     E F+      HSEKLAIAFGL +T     +R+VKNLR            S   
Sbjct: 538 DIEEEEKEHFI----GCHSEKLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFT 593

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R++IVRD  R+H F DG CSC DYW
Sbjct: 594 GREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 39/300 (13%)

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           +L   + +H  ++R G +    +   ++R     G    +  +F    E ++  +N++I 
Sbjct: 22  SLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIH 81

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
                    E++++Y  MR E +  D FT   LL +CA +    +GI LH +  + G   
Sbjct: 82  GLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCES 141

Query: 224 SVYVGNALVDMYAKCGNLDSAF-------------------------------------- 245
             +V  +LV +Y KCG +D+AF                                      
Sbjct: 142 DAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRAC 201

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  M ++D++SW+SMI GY  +G   EA+  F +ML  GF PD    +G+LC C+  G
Sbjct: 202 SVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLG 261

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +E G  +   ++ R            L+D+Y + G+++ A EV       D V+W   +
Sbjct: 262 ALELG-NWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAI 320


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/540 (37%), Positives = 313/540 (57%), Gaps = 21/540 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL +YA   +   +Y+  LF+ +    ++ W+ ++  FA++         +  +L   ++
Sbjct: 41  LLYTYAQHKAIDDAYS--LFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVT 98

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD +T  F ++ C     L   + +H  V++ G      V  +L+  YA   V+E A+ 
Sbjct: 99  -PDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQR 157

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F+ M  +DLV+W  +I  Y   + + E+L L++RMR E V  D   +V ++++CA +GA
Sbjct: 158 LFERMLSKDLVTWTVMIGAYADCNAY-ESLVLFDRMREEGVVPDKVAMVTVVNACAKLGA 216

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           ++   F +      GF   V +G A++DMYAKCG+++SA  VF RM++++V+SW++MI  
Sbjct: 217 MHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAA 276

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           YG HGRG +AI  F  ML     P+ +TF+ LL  CSH GL+EEG+ +F+ M   + ++P
Sbjct: 277 YGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRP 336

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            +KHY C+VDL GRAG+L++AL +I   +   D  LW  LLG+C+IH  +E+ E A  +L
Sbjct: 337 DVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSL 396

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           ++L+  + G YVLL+ IYA     E VA+ R ++    +K  PGW+WIE+ N+ ++F V 
Sbjct: 397 LELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVG 456

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY-HSEKLAIAF 503
           D+SHP +  IY  L  ++ + +  GY  D   V       E+ +++   Y HSEKLAIAF
Sbjct: 457 DRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVL---QDVEEEVKQEMLYTHSEKLAIAF 513

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           GL   P+G  +RI KNLR            S    R +IVRD  R+HHF DG CSCGDYW
Sbjct: 514 GLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 129/271 (47%), Gaps = 2/271 (0%)

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R + +   +++H  V+ +G  + +V++  L+  YA +  I+ A S+FD +  RD  +W+ 
Sbjct: 12  RCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSV 71

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  + +A  H      +  +    V  D +TL  ++ +C     L +G  +H +  + G
Sbjct: 72  MVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHG 131

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            +   +V  +LVDMYAKC  ++ A  +F RM  +D+++W  MI  Y       E++  F 
Sbjct: 132 LLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYESLVLFD 190

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M   G  PD +  + ++  C+  G +     + +  + R      +     ++D+Y + 
Sbjct: 191 RMREEGVVPDKVAMVTVVNACAKLGAMHRA-RFANDYIVRNGFSLDVILGTAMIDMYAKC 249

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           G +E A EV +     + + W  ++ +   H
Sbjct: 250 GSVESAREVFDRMKEKNVISWSAMIAAYGYH 280


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/530 (39%), Positives = 307/530 (57%), Gaps = 22/530 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F++ +      WN+L RA A +      +  Y  M M  +S  D FT+T+ LKAC 
Sbjct: 123 ARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSS-DRFTYTYLLKACV 181

Query: 101 R----VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
                V  L K +E+H  ++R GY   V V T LM  YA  G +  A +VFD MP +++V
Sbjct: 182 ASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVV 241

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFE--DVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           SW+++I+CY +     EAL+L+  M     D   +  T+V +L +CA   AL  G  +H 
Sbjct: 242 SWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHA 301

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                G    + V +AL+ MYA+CG L+S   +F RM K+DV+ WNS+I  YG+HG G +
Sbjct: 302 YILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRK 361

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           AI  F++M+  GF P  I+F+ +L  CSH GLVEEG + F  MV  + ++P ++HY C+V
Sbjct: 362 AIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMV 421

Query: 335 DLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           DL GRA +L++A ++I +      P +W +LLG+C+IH +VE+ E A K L +LE  +AG
Sbjct: 422 DLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAG 481

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
           +YVLLA IYA  +  + V R +KL+ S  ++  PG SWIE+  +++ F   D+ +P  + 
Sbjct: 482 NYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQ 541

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           ++  L  + +  K  GYT    LV       E   E+    HSEKLA+AFGL  T  G +
Sbjct: 542 LHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEK--ERIVLGHSEKLAVAFGLINTSKGDT 599

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +RI KNLR            S    R+++VRD  R+HHF+DG+CSCGDYW
Sbjct: 600 IRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 188/403 (46%), Gaps = 21/403 (5%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           +S LS +   FN    P +   N LI++  +  +  QA++  +H      S P   T   
Sbjct: 21  TSKLSVSSFSFNPSTPPNSNN-NHLIQSLCKQGNLKQALYLLSHE-----SNPTQQTCEL 74

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            + +  R  +L+   ++H  ++  G+++   ++T L+  ++    ++ AR VFD   +R 
Sbjct: 75  LILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRT 134

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH----VGALNMGI 210
           +  WN++      A    + L+LY RM    V  D FT   LL +C      V  L  G 
Sbjct: 135 IYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGK 194

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H      G+   V+V   L+DMYA+ G +  A  VF  M  ++V+SW++MI  Y  +G
Sbjct: 195 EIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNG 254

Query: 271 RGDEAISFFKQMLMAGFH--PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +  EA+  F++M++      P+S+T + +L  C+    +E+G +  H  + R  L   + 
Sbjct: 255 KPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQG-KLIHAYILRRGLDSILP 313

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL- 387
               L+ +Y R GKLE    + +     D VLW +L+ S  +H     G  A+K   ++ 
Sbjct: 314 VISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLH---GYGRKAIKIFEEMI 370

Query: 388 -EAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTT 426
               S      ++ + AC+     EEG      ++K +GI+ +
Sbjct: 371 DHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPS 413


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/524 (38%), Positives = 303/524 (57%), Gaps = 23/524 (4%)

Query: 45   FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
            FN++ +     WNSLI  +AQ   P  AI  +  + +++++ PD  T    + AC  +  
Sbjct: 488  FNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN-PDAGTMVGVVPACALLND 546

Query: 105  LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-ERDLVSWNSIIS 163
            L++   +HG +++ G+E    V   L+  YA  G + +A  +F+     +D V+WN II+
Sbjct: 547  LDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIA 606

Query: 164  CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
             Y Q     EA+  + +MR E+   +  T V +L + A++ A   G+  H    +MGF+ 
Sbjct: 607  AYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLS 666

Query: 224  SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            +  VGN+L+DMYAKCG LD +  +F+ M  +D +SWN+M+ GY VHG GD AI+ F  M 
Sbjct: 667  NTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQ 726

Query: 284  MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             +    DS++F+ +L  C H GLVEEG + FH M  +Y++KP ++HY C+VDL GRAG  
Sbjct: 727  ESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLF 786

Query: 344  EKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
            ++ L  I    P +P   +W  LLGSC++H NV++GE+A+ +LV+LE  +   +V+L++I
Sbjct: 787  DETLGFIKV-MPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSI 845

Query: 402  YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
            YA +       + R  +   G+K TPG SW+E+ N+VH F V DKSHP  + ++     +
Sbjct: 846  YAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTL 905

Query: 462  MHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
            + + + IGY  D S V   V     E FL      HSE+LAI F L  TP G++++IVKN
Sbjct: 906  LEKMEKIGYVPDRSCVLQNVEEEDKEMFLYS----HSERLAITFALLNTPPGSTIQIVKN 961

Query: 520  LRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            LR  A             +R +IVRD  R+HHF DG+CSC DYW
Sbjct: 962  LRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 180/358 (50%), Gaps = 13/358 (3%)

Query: 21  IHGEWLLNSYAISVSSSL----------SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPL 70
           IHG      ++ +VS+ L            A+ +F+Q+ +    +W +++  +A +   +
Sbjct: 252 IHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFV 311

Query: 71  QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130
           + +  ++ M + ++        +  L A E +  L K +E+HG  ++   +  ++V+T L
Sbjct: 312 EVLELFDKMKLGNVRINKVSAVSAFLAAAETID-LEKGKEIHGCALQQRIDSDILVATPL 370

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190
           M  YA  G  E A+ +F  +  RDLV+W++II+   Q  +  EAL L++ M+ + +  + 
Sbjct: 371 MVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNR 430

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
            TL+ +L +CA +  L +G  +H    +      +  G ALV MYAKCG   +A   F+R
Sbjct: 431 VTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNR 490

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           M  RD+++WNS+I GY   G    AI  F ++ ++  +PD+ T +G++  C+    +++G
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG 550

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGS 367
               H ++ +   +        L+D+Y + G L  A  + N T    D V W  ++ +
Sbjct: 551 T-CIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 169/342 (49%), Gaps = 6/342 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y++     L  A+ +F+   NP    WNS+IRA+ +S    +A+  Y  M+   L 
Sbjct: 69  LINLYSLFHKCDL--ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGL- 125

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD +TFTF LKAC     L +    HG + R G ER V +   L+  Y+  G ++ AR 
Sbjct: 126 EPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRARE 185

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD MP+RD+V+WN++I+  +Q+    EA+  +  M+   V     +L+ L      +  
Sbjct: 186 VFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSN 245

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           + +   +H       F  S  V N L+D+Y+KCG++D A  VF +M  +D +SW +M+ G
Sbjct: 246 IELCRSIHGYVFRRDF--SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAG 303

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y  +G   E +  F +M +     + ++ +      +    +E+G E  H    +  +  
Sbjct: 304 YAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKE-IHGCALQQRIDS 362

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
            I     L+ +Y + G+ EKA ++       D V W  ++ +
Sbjct: 363 DILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 138/266 (51%), Gaps = 8/266 (3%)

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
           K LN   ++H  +I SG++    + T+L+  Y+     + ARSVFD+ P    + WNS+I
Sbjct: 43  KHLNPLLQIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMI 101

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM--GIFLHRIACEMG 220
             YT++  + EAL++Y  M  + +  D +T   +L +C   GALN+  G++ H      G
Sbjct: 102 RAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC--TGALNLQEGVWFHGEIDRRG 159

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               V++G  LVDMY+K G+L  A  VF +M KRDV++WN+MI G        EA+ FF+
Sbjct: 160 LERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFR 219

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            M + G  P S++ L L  G      +E      H  V R +    + +   L+DLY + 
Sbjct: 220 SMQLVGVEPSSVSLLNLFPGICKLSNIEL-CRSIHGYVFRRDFSSAVSN--GLIDLYSKC 276

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLG 366
           G ++ A  V +     D V W T++ 
Sbjct: 277 GDVDVARRVFDQMVDQDDVSWGTMMA 302


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/524 (38%), Positives = 307/524 (58%), Gaps = 16/524 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+LLF +I  P   A+N++I  F  +     ++  +  +L +   R  + T    +    
Sbjct: 263 ARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSG-ERVSSSTIVGLIPLHS 321

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               L+    +HGF ++SG      VST     Y     I+ AR +FD  PE+ +V+WN+
Sbjct: 322 PFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNA 381

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS YTQ      A+ L++ M   +   +  T+  +LS+CA +G+L+ G ++H +     
Sbjct: 382 MISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSEN 441

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              ++YV  ALVDMYAKCGN+  A+ +F  M +++ ++WN+MI GYG+HG G EA+  + 
Sbjct: 442 LEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYN 501

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML  G++P ++TFL +L  CSH GLV EG E FH MV++Y ++P I+HY C+VD+ GR+
Sbjct: 502 EMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRS 561

Query: 341 GKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+LEKALE I        P +W TLLG+C IH++ +I  +A + L +L+  S G YVLL+
Sbjct: 562 GQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLS 621

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            IY+  ++    A  R+++K   +  +PG + IE+    H FV  D+SH  A  IY KLE
Sbjct: 622 NIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLE 681

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           ++  + + +GY + E++ A+     E+  E +   HSEKLAIAFGL TT  G  +RI+KN
Sbjct: 682 KLTGKMREMGY-QAETVPALHDVEEEE-KELAVNVHSEKLAIAFGLITTEPGNEIRIIKN 739

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    R ++VRD  R+HHF+DG+CSCGDYW
Sbjct: 740 LRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 227/490 (46%), Gaps = 58/490 (11%)

Query: 3   LKKHARYVGLNKAR---QAHEIHGEWLLNSYAISVS------------SSLSYAQLLFNQ 47
           L ++  +  +NKA       + H +++LN Y   ++            S+  +A+ LF  
Sbjct: 10  LSRNTLFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFS 69

Query: 48  IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNK 107
           +  P    +N L+R F+ + SP  +I  Y H+   +   PD FT+ F + AC   K L  
Sbjct: 70  VPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHL-- 127

Query: 108 CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ 167
              LH   I  GY   V V + L+  Y     +  AR VFD MPERD V WN++I+   +
Sbjct: 128 -MLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVK 186

Query: 168 ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227
                ++++L+  M  + V +D  T+  +L + A +  L +G+ +  +A ++GF    YV
Sbjct: 187 NCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYV 246

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
              L+ +Y+KCG++++A  +F R+ + D++++N+MI G+  +G  + ++  F+++L +G 
Sbjct: 247 LTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGE 306

Query: 288 HPDSITFLGLL----------CGCSHQGL-VEEGV-------EYFHMMVSRYNLKPGIKH 329
              S T +GL+            CS  G  V+ G+         F  + ++ N     +H
Sbjct: 307 RVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARH 366

Query: 330 ------------YGCLVDLYGRAGKLEKAL----EVINTSSPSDPVLWRTLLGSCKIHRN 373
                       +  ++  Y + G  E A+    E++ T    + V   T+L +C    +
Sbjct: 367 LFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGS 426

Query: 374 VEIGEIAMKNLVQLEAASAGDYV--LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSW 431
           +  G+  + +L++ E      YV   L  +YA   +   ++   +L  S   K T  W+ 
Sbjct: 427 LSFGK-WVHHLIKSENLEPNIYVSTALVDMYAKCGN---ISEAWQLFDSMSEKNTVTWNT 482

Query: 432 IEIGNQVHKF 441
           +  G  +H +
Sbjct: 483 MIFGYGLHGY 492



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 181/372 (48%), Gaps = 7/372 (1%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           S + YA+ +F+ +    T  WN++I    ++     +I  +  M+ A   R D+ T T  
Sbjct: 157 SRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMV-ADGVRVDSSTVTAV 215

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L A   ++ L     +    ++ G+  C  V T L+  Y+  G +  AR +F  +   DL
Sbjct: 216 LPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDL 275

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           +++N++IS +T       ++KL+  + F    +   T+V L+   +  G L++   +H  
Sbjct: 276 IAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGF 335

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             + G + +  V  A   +Y K   +D A  +F    ++ V++WN+MI GY  +G  + A
Sbjct: 336 CVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETA 395

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           IS FK+M+   F P+++T   +L  C+  G +  G ++ H ++   NL+P I     LVD
Sbjct: 396 ISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVD 454

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAG 393
           +Y + G + +A ++ ++ S  + V W T++    +H     G  A+K  N +     +  
Sbjct: 455 MYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLH---GYGHEALKLYNEMLHLGYNPS 511

Query: 394 DYVLLATIYACT 405
               L+ +YAC+
Sbjct: 512 AVTFLSVLYACS 523


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/580 (35%), Positives = 319/580 (55%), Gaps = 65/580 (11%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSP---LQAIFYYNHMLMASLSRPDTFT 91
           S  + YA+ +F Q+  P    WN+++R  A++       +A+  ++ ML     +P+ FT
Sbjct: 65  SRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFT 124

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE---------- 141
           F   LKAC R   L + +++HG +++ G+     V +NL+R Y    V+E          
Sbjct: 125 FPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNV 184

Query: 142 -------------------------------------AARSVFDNMPERDLVSWNSIISC 164
                                                +A+++FD MP+R +VSWN +IS 
Sbjct: 185 VDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISG 244

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
           Y Q    +EA+ L++ M+  ++  +  TLV +L + A +GAL +G ++H  A +      
Sbjct: 245 YAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEID 304

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
             +G+ALVDMY+KCG++D A  VF  + KR+ ++W+++I  + +HGR ++AI  F  M  
Sbjct: 305 DVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGK 364

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
           AG  P+ + ++G+L  CSH GLVEEG  +F  MV    L+P I+HYGC+VDL GRAG LE
Sbjct: 365 AGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLE 424

Query: 345 KALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403
           +A E+I N     D V+W+ LLG+CK+H+N+++GE   + L++L    +G YV L+ +YA
Sbjct: 425 EAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYA 484

Query: 404 CTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMH 463
              + E VAR R  +K   I+  PG SWIEI   +H+F+V+D SH  A  I   L E+  
Sbjct: 485 SLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSM 544

Query: 464 RAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-- 521
           + +  GY  +   V ++    E    ++  YHSEK+A+AFGL +T     L+IVKNLR  
Sbjct: 545 KLRSNGYRPNTLEVFLNTDEQER--ARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRIC 602

Query: 522 ----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                     S+ Y R +IVRDR R+H F  G CSC DYW
Sbjct: 603 EDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/533 (37%), Positives = 313/533 (58%), Gaps = 21/533 (3%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           + S++Y + LF  + +P +  +NSLI+A ++    L A+ +Y  ML++ +  P T+TFT 
Sbjct: 55  AGSIAYTRRLFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIV-PSTYTFTS 113

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            +KAC  +  L     +H  V  SGY     V   L+  YA +     AR VFD MP+R 
Sbjct: 114 VIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRS 173

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +V+WNS+IS Y Q     EA++++ +MR   V  D  T V +LS+C+ +G+L+ G +LH 
Sbjct: 174 IVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHD 233

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                G   +V +  +LV+M+++CG++  A  VF  M + +V+ W +MI GYG+HG G E
Sbjct: 234 CIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVE 293

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F +M   G  P+S+TF+ +L  C+H GL++EG   F  M   Y + PG++H+ C+V
Sbjct: 294 AMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMV 353

Query: 335 DLYGRAGKLEKALEVINTSSPSD--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           D++GR G L +A + +   +  +  P +W  +LG+CK+H+N ++G    +NL+  E  + 
Sbjct: 354 DMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENP 413

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
           G YVLL+ +YA     + V   R ++   G+K   G+S I++ N+ + F + DKSHP+ +
Sbjct: 414 GHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETN 473

Query: 453 MIYRKLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
            IY  L+E++ R K  GY    + ++  + G   E  L     YHSEKLA+AFGL  T D
Sbjct: 474 EIYCFLDELIWRCKDAGYAPVPESAMHELEGEEREYALR----YHSEKLAVAFGLMKTGD 529

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G +LRIVKNLR            S   +R++IVRD++R+HHFR+G CSC DYW
Sbjct: 530 GVTLRIVKNLRICEDCHSAIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 128/267 (47%), Gaps = 1/267 (0%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L + Q+ H  ++ +G  R   + T L+    A G I   R +F ++ + D   +NS+I  
Sbjct: 23  LRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKA 82

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
            ++  F L+A+  Y RM    +    +T   ++ +CA +  L +G  +H      G+   
Sbjct: 83  SSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASD 142

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
            +V  AL+  YAK      A  VF  M +R +++WNSMI GY  +G  +EA+  F +M  
Sbjct: 143 SFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRE 202

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
           +   PDS TF+ +L  CS  G ++ G  + H  +    +   +     LV+++ R G + 
Sbjct: 203 SRVEPDSATFVSVLSACSQLGSLDFGC-WLHDCIVGSGITMNVVLATSLVNMFSRCGDVG 261

Query: 345 KALEVINTSSPSDPVLWRTLLGSCKIH 371
           +A  V  +    + VLW  ++    +H
Sbjct: 262 RARAVFYSMIEGNVVLWTAMISGYGMH 288


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/607 (35%), Positives = 328/607 (54%), Gaps = 66/607 (10%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLN--SYAISVSSSLSYAQLLFNQIQN--------PQ 52
            K   R + L   RQ   +HG  L +   Y + V ++L    LL  Q+          P+
Sbjct: 146 FKGFTRDIALEYGRQ---LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPK 202

Query: 53  TQ--AWNSLIRAFAQ--SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKC 108
                WN +I A+ +       + +F    ++      P T T    L AC ++K L   
Sbjct: 203 ADVITWNMIISAYNKVGKFEESRRLFL---VMEDKQVLPTTVTLVLVLSACSKLKDLRTG 259

Query: 109 QELHGFV-------------------------------IRSGYERCVVVSTNLMRGYAAN 137
           +++H +V                                RS   R ++  T ++ G+   
Sbjct: 260 KKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNL 319

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G I+ AR+ FD MPE+D VSW ++I  Y +++   EAL+L+  M+  +V  D FT+V +L
Sbjct: 320 GEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVL 379

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           ++CAH+GAL +G ++            ++V NAL+DMY KCG++D A  +F  M +RD  
Sbjct: 380 TACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF 439

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +W +MIVG  V+G G++A+  F  ML A   PD IT++G+L  C+H GLV++G +YF  M
Sbjct: 440 TWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRM 499

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEI 376
            S++ ++P I HYGCLVDL  RAG+L++A EVI N    ++ ++W  LL  C+++R  ++
Sbjct: 500 TSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDM 559

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
            E+ +K +++LE  +   YVLL  IYA  K    +   R+++   GIK  PG S IE+  
Sbjct: 560 AEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNG 619

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHS 496
           +VH+FV  D+SHP    I  KL+++    K  GY+ D S V +    +E+  E S   HS
Sbjct: 620 RVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFL--DIAEEDKENSVFRHS 677

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           EKLAIAFGL  +P G ++RI KNLR            S  Y+R++IVRDR R+HHF+ GL
Sbjct: 678 EKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGL 737

Query: 545 CSCGDYW 551
           CSC DYW
Sbjct: 738 CSCKDYW 744



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 186/402 (46%), Gaps = 38/402 (9%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
              YA+ LF++I  P    WN++IR +++   P   +  Y  ML   + +PD +TF F  
Sbjct: 88  DFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGV-KPDRYTFPFLF 146

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           K   R  AL   ++LHG V++ G +  V V T L++ Y   G ++ AR VFD  P+ D++
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 206

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           +WN IIS Y +     E+ +L+  M  + V     TLV +LS+C+ +  L  G  +H   
Sbjct: 207 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV 266

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS--------------- 261
                  ++ + NA++DMYA CG +DSA  +F  M  RD++SW +               
Sbjct: 267 KNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVAR 326

Query: 262 ----------------MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
                           MI GY    R  EA+  F+ M      PD  T + +L  C+H G
Sbjct: 327 NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLG 386

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +E G E+    + R  +K  +     L+D+Y + G ++KA  +    S  D   W  ++
Sbjct: 387 ALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMI 445

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACT 405
               ++ +   GE A+     +  AS    +   +  + ACT
Sbjct: 446 VGLAVNGH---GEKALDMFSNMLKASILPDEITYIGVLSACT 484



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 134/295 (45%), Gaps = 12/295 (4%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN--GVIEAAR 144
           P T      L+ CE   ++++ Q++H   I+ G     V+   +M     +  G  + AR
Sbjct: 37  PPTHPLISLLETCE---SMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYAR 93

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            +FD +PE +L  WN++I  Y++  F    + LY  M    V  D +T   L        
Sbjct: 94  RLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDI 153

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL  G  LH    + G   +V+V  ALV MY  CG LD+A  VF    K DV++WN +I 
Sbjct: 154 ALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIIS 213

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
            Y   G+ +E+   F  M      P ++T + +L  CS    +  G +  H  V    ++
Sbjct: 214 AYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHSYVKNCKVE 272

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL------LGSCKIHRN 373
             +     ++D+Y   G+++ AL +  + +  D + W T+      LG   + RN
Sbjct: 273 SNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARN 327


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/528 (39%), Positives = 304/528 (57%), Gaps = 18/528 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++ AQLLF+ ++      WN++I A+ ++ + ++ +  +  ML   ++  D  T    + 
Sbjct: 170 VAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAF-DEITLVSVVT 228

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC R+      + +  +V   G  R   + T L+  YA  G +  AR +FD M  RD+V+
Sbjct: 229 ACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVA 288

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W+++IS YTQA    EAL L+  M+  +V  +  T+V +LS+CA +GAL  G ++H    
Sbjct: 289 WSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIR 348

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
                 ++ +G ALVD YAKCG +D A   F  M  ++  +W ++I G   +GRG EA+ 
Sbjct: 349 RKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALE 408

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F  M  A   P  +TF+G+L  CSH  LVEEG  +F  M   Y +KP  +HYGC+VDL 
Sbjct: 409 LFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLL 468

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GRAG +++A + I T  P +P  V+WR LL SC +H+NVEIGE A+K +V L  + +GDY
Sbjct: 469 GRAGLIDEAYQFIRT-MPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDY 527

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           +LL+ IYA     +  A  RK +K  GI+ TPG S IE+   V +F  +D  HP    IY
Sbjct: 528 ILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIY 587

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           +K+EE++ R K  GY  + + V +     E   E S ++HSEKLAIAFGL     G ++R
Sbjct: 588 QKVEEMIDRIKMAGYIPNTADVRLEVDEHEK--EVSVSHHSEKLAIAFGLMKLDPGATIR 645

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + KNLR            S  Y+R+++VRDR R+HHF+DG CSC DYW
Sbjct: 646 LSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 133/488 (27%), Positives = 233/488 (47%), Gaps = 23/488 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNP--QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS 83
           LL + A S  + L YA  LF     P   T  +N L+RA   +  P  A+  +  ML  +
Sbjct: 55  LLEAAAAS-PTLLPYAVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVA 113

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
              PD  T    LK+C R+  L+  + +  + ++ G      V ++L+  YA+   + AA
Sbjct: 114 SVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAA 173

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           + +FD + E  +V WN+II+ Y +    +E +++++ M    V  D  TLV ++++C  +
Sbjct: 174 QLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRI 233

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           G   +G ++     E G V +  +  AL+DMYAKCG L  A  +F  M+ RDV++W++MI
Sbjct: 234 GDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMI 293

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            GY    +  EA++ F +M +A   P+ +T + +L  C+  G +E G ++ H  + R  L
Sbjct: 294 SGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETG-KWVHSYIRRKRL 352

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
              I     LVD Y + G ++ A+E   +    +   W  L+     +     G  A++ 
Sbjct: 353 SLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGR---GREALEL 409

Query: 384 LVQLEAAS--AGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTTP---GWSWIEIG 435
              +  AS    D   +  + AC+     EEG      + +  GIK      G     +G
Sbjct: 410 FSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLG 469

Query: 436 -----NQVHKFVVDDKSHPDADMIYRKLEE--IMHRAKFIGYTKDESLVAVSGSSSEDFL 488
                ++ ++F+      P+A +I+R L     +H+   IG    + +V+++ S S D++
Sbjct: 470 RAGLIDEAYQFIRTMPIEPNA-VIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYI 528

Query: 489 EKSSAYHS 496
             S+ Y S
Sbjct: 529 LLSNIYAS 536


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/560 (37%), Positives = 316/560 (56%), Gaps = 50/560 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA  +F+QIQNP    +N LIR F+    P +A  +Y  ML + +  PD  TF F +K
Sbjct: 67  LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRI-WPDNITFPFLIK 125

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           A   ++ +   ++ H  ++R G++                               R VV 
Sbjct: 126 ASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVS 185

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T+++ GY   G++E AR +FD MP R+L +W+ +I+ Y + +   +A+ L+E M+ E V
Sbjct: 186 WTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGV 245

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             +   +V ++SSCAH+GAL  G   +    +     ++ +G ALVDM+ +CG+++ A  
Sbjct: 246 VANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIH 305

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF  + + D LSW+S+I G  VHG   +A+ +F QM+  GF P  +TF  +L  CSH GL
Sbjct: 306 VFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGL 365

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS--SPSDPVLWRTL 364
           VE+G+E +  M   + ++P ++HYGC+VD+ GRAGKL +A   I      P+ P+L   L
Sbjct: 366 VEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPIL-GAL 424

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
           LG+CKI++N E+ E     L++++   +G YVLL+ IYAC    + +   R ++K   +K
Sbjct: 425 LGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVK 484

Query: 425 TTPGWSWIEIGNQVHKFVV-DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
             PGWS IEI  +++KF + DD+ HP+   I RK EEI+ + + IGY  +          
Sbjct: 485 KPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDE 544

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIV 531
            E   E S   HSEKLAIA+G+  T  GT++RIVKNLR            S  Y R+LIV
Sbjct: 545 EEK--ESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIV 602

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RDR R+HHFR+G+CSC DYW
Sbjct: 603 RDRNRFHHFRNGVCSCRDYW 622


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/524 (38%), Positives = 306/524 (58%), Gaps = 16/524 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+  ++ +      AWN+LI  ++Q    L A+  ++ M    +    T T +  LK+  
Sbjct: 338 ARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQT-TLSTVLKSVA 396

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            ++A+  C+++H   I+SG      V  +L+  Y     I+ A  +F+     DLV++ S
Sbjct: 397 SLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTS 456

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+ Y+Q     EALKLY +M+  D+  D F    LL++CA++ A   G  LH  A + G
Sbjct: 457 MITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFG 516

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F+  ++  N+LV+MYAKCG+++ A   FS +  R ++SW++MI GY  HG G EA+  F 
Sbjct: 517 FMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFN 576

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QML  G  P+ IT + +LC C+H GLV EG +YF  M   + +KP  +HY C++DL GR+
Sbjct: 577 QMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRS 636

Query: 341 GKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           GKL +A+E++N+    +D  +W  LLG+ +IH+N+E+G+ A K L  LE   +G +VLLA
Sbjct: 637 GKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLA 696

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            IYA     E VA+ RK +K + +K  PG SWIEI ++V+ F+V D+SH  +D IY KL+
Sbjct: 697 NIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLD 756

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           ++       GY+    +   +   SE   EK   +HSEKLA+AFGL  TP G  +R+ KN
Sbjct: 757 QLGDLLSKAGYSSIVEIDIHNVDKSEK--EKLLYHHSEKLAVAFGLIATPPGGPIRVKKN 814

Query: 520 LRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR                SR++IVRD  R+HHF+DG CSCGDYW
Sbjct: 815 LRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 203/433 (46%), Gaps = 22/433 (5%)

Query: 11  GLNKARQAHEIHGEWL-----LNSYAI-------SVSSSLSYAQLLFNQIQNPQTQAWNS 58
           GL +     +IHG  L     L+ ++        S +  +  A  +F  I +P   +WN+
Sbjct: 195 GLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNA 254

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           +I           A+   + M   S +RP+ FT +  LKAC  +      ++LH  +I+ 
Sbjct: 255 IIAGCVLHDCNDLALMLLDEM-KGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKM 313

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
                +  +  L+  Y+   +++ AR  +D+MP++D+++WN++IS Y+Q   HL+A+ L+
Sbjct: 314 DAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLF 373

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
            +M  ED+  +  TL  +L S A + A+ +   +H I+ + G     YV N+L+D Y KC
Sbjct: 374 SKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKC 433

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
            ++D A  +F      D++++ SMI  Y  +G G+EA+  + QM  A   PD      LL
Sbjct: 434 NHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLL 493

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C++    E+G +  H+   ++     I     LV++Y + G +E A    +       
Sbjct: 494 NACANLSAYEQGKQ-LHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGI 552

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLATIYACTKD---EEGVAR 413
           V W  ++G    H +   G+ A++   Q+  +        L++ + AC       EG   
Sbjct: 553 VSWSAMIGGYAQHGH---GKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQY 609

Query: 414 TRKLIKSNGIKTT 426
             K+    GIK T
Sbjct: 610 FEKMEVMFGIKPT 622



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 170/328 (51%), Gaps = 2/328 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
             YA+ L ++       +W+SL+  + Q+    +A+  +N M +  + + + FTF   LK
Sbjct: 32  FGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGV-KCNEFTFPSVLK 90

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC   + LN  +++HG  + +G+E    V+  L+  YA  G+++ +R +F  + ER++VS
Sbjct: 91  ACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVS 150

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++ SCY Q+    EA+ L++ M    +  + F++  +L++CA +   ++G  +H +  
Sbjct: 151 WNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLML 210

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +MG     +  NALVDMY+K G ++ A  VF  +   DV+SWN++I G  +H   D A+ 
Sbjct: 211 KMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALM 270

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
              +M  +G  P+  T    L  C+  G  E G +  H  + + +    +     LVD+Y
Sbjct: 271 LLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQ-LHSSLIKMDAHSDLFAAVGLVDMY 329

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +   ++ A    ++    D + W  L+
Sbjct: 330 SKCEMMDDARRAYDSMPKKDIIAWNALI 357



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 162/342 (47%), Gaps = 26/342 (7%)

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           ELH  +I+ G+ R   +  +L+  Y+       AR + D   E D+VSW+S++S Y Q  
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
           F  EAL ++  M    V  + FT   +L +C+    LNMG  +H +A   GF    +V N
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
            LV MYAKCG LD +  +F  + +R+V+SWN++   Y       EA+  FK+M+ +G  P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 290 DSITFLGLLCGCSHQGLVEEGV-EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           +  +   +L  C+  GL E  +    H ++ +  L         LVD+Y +AG++E A+ 
Sbjct: 182 NEFSISIILNACA--GLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 349 VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408
           V    +  D V W  ++  C +H   +  ++A+  L +++ +                  
Sbjct: 240 VFQDIAHPDVVSWNAIIAGCVLH---DCNDLALMLLDEMKGSG----------------- 279

Query: 409 EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
               R      S+ +K      + E+G Q+H  ++   +H D
Sbjct: 280 ---TRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSD 318


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/444 (44%), Positives = 276/444 (62%), Gaps = 15/444 (3%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           E+ +V  T ++  YA  G+I+ AR +FD + ERD + WN +I  Y Q     E L L+ +
Sbjct: 3   EKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQ 62

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M    V  +  T++ +LS+C   GAL  G ++H      G   +V VG +L+DMY+KCG+
Sbjct: 63  MLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGS 122

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           L+ A  VF R+  +DV++WNSM+VGY +HG   +A+  FK+M M G+ P  ITF+G+L  
Sbjct: 123 LEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNA 182

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPV 359
           CSH GLV EG ++F+ M   Y ++P ++HYGC+V+L GRAG LE+A E++ N     DPV
Sbjct: 183 CSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPV 242

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
           LW TLLG+C++H N+ +GE   + LV    A++G YVLL+ IYA   + EGVAR R L+K
Sbjct: 243 LWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMK 302

Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
            +G +  PG S IE+ N+VH+F+  D  HP +  IY  LEEI    K  GYT    +V  
Sbjct: 303 ESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLH 362

Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIA------------YSR 527
               ++   E+S   HSEKLA+AFGL TT  GT+++IVKNLR  A              R
Sbjct: 363 DLEDAQK--ERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGR 420

Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
            +++RDR R+HHF +GLCSCGDYW
Sbjct: 421 KVVMRDRNRFHHFVNGLCSCGDYW 444



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 118/232 (50%), Gaps = 3/232 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A++LF+ ++      WN +I  +AQ   P + +  +  ML A + RP+  T    L AC 
Sbjct: 25  ARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKV-RPNEVTVLAVLSACG 83

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +  AL   + +H ++  +G    V V T+L+  Y+  G +E AR VF+ +  +D+V+WNS
Sbjct: 84  QTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNS 143

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEM 219
           ++  Y    F  +AL+L++ M          T + +L++C+H G ++ G  F + +  E 
Sbjct: 144 MVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEY 203

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHG 270
           G    V     +V++  + G L+ A+ +   M   +D + W +++    +HG
Sbjct: 204 GIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHG 255



 Score = 42.0 bits (97), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 17/148 (11%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ Y  S   SL  A+L+F +I N    AWNS++  +A       A+  +  M M 
Sbjct: 110 GTSLIDMY--SKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMI 167

Query: 83  SLSRPDTFTFTFTLKAC-------ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
              +P   TF   L AC       E  K     ++ +G   +  +  C+V   NL+    
Sbjct: 168 GY-QPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMV---NLL---G 220

Query: 136 ANGVIEAARSVFDNMP-ERDLVSWNSII 162
             G +E A  +  NM  ++D V W +++
Sbjct: 221 RAGYLEEAYELVKNMEIDQDPVLWGTLL 248


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/569 (38%), Positives = 328/569 (57%), Gaps = 29/569 (5%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           MG   H   V    A   H + G  L++ Y  S    +  AQ LF+++ NP   A+N+LI
Sbjct: 230 MGRCVHGYGVKCGLAEHEHVVTG--LMSLY--SKCGDMDSAQFLFDRMDNPDLVAYNALI 285

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV--KALNKCQELHGFVIRS 118
             ++ +     ++  +   L AS  RP++ T    +        + L +C  LH FV+++
Sbjct: 286 SGYSVNGMVESSVELFKE-LTASGWRPNSSTLVAVIPVYSPFGHELLARC--LHAFVVKA 342

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
             +   +VST L   Y     +E+ARS+FD M E+ + SWN++IS Y Q      A+ L+
Sbjct: 343 RLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALF 402

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
           + M+  +V  +  T+   LS+CAH+GAL++G ++HRI  +     +VYV  AL+DMYAKC
Sbjct: 403 QLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKC 462

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G++  A  +F RM  ++V+SWN+MI GYG+HG+G EA+  +K ML A   P S TFL ++
Sbjct: 463 GSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVI 522

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN--TSSPS 356
             CSH GLV+EG + F +M + Y + PGI+H  C+VDL GRAGKL +ALE+I+    S  
Sbjct: 523 YACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAI 582

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
            P +W  LLG+C +H+N ++ ++A + L +L++ +AG YVLL+ +Y   K     A  R+
Sbjct: 583 GPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQ 642

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDE 474
             K+  +  TPG + IEIG++ H F+  D  HP ++ IY  LE +  +    GY    + 
Sbjct: 643 EAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEA 702

Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
           +L  V     E  ++     HSEKLAIAFGL +T  GT +RI+KNLR            S
Sbjct: 703 ALYDVEEEEKEHMVK----VHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFIS 758

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               R ++VRD  R+HHFRDG+CSCGDYW
Sbjct: 759 KVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 198/431 (45%), Gaps = 23/431 (5%)

Query: 13  NKARQAHEIHGEWLLNSYAIS--VSSSLSY----------AQLLFNQIQNPQTQAWNSLI 60
           N A  A  +HG  +   YA    V+S+L+           A+ +F+ + +P T  WN+L+
Sbjct: 128 NDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLL 187

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
                S    +A+  +  M+ A   RPD+ T   +L+A      +   + +HG+ ++ G 
Sbjct: 188 AGLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGL 243

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
                V T LM  Y+  G +++A+ +FD M   DLV++N++IS Y+       +++L++ 
Sbjct: 244 AEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKE 303

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           +       +  TLV ++   +  G   +   LH    +        V  AL  +Y +  +
Sbjct: 304 LTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLND 363

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           ++SA  +F  M ++ + SWN+MI GY  +G  + A++ F+ M      P+ IT    L  
Sbjct: 364 MESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSA 423

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           C+H G +  G ++ H ++S+  L+  +     L+D+Y + G + +A  + +     + V 
Sbjct: 424 CAHLGALSLG-KWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVS 482

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKL 417
           W  ++    +H          K+++            L+ IYAC+     +EG    R  
Sbjct: 483 WNAMISGYGLHGQGAEALKLYKDMLDARILPTSS-TFLSVIYACSHGGLVDEGQKVFR-- 539

Query: 418 IKSNGIKTTPG 428
           + +N  + TPG
Sbjct: 540 VMTNEYRITPG 550


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/561 (38%), Positives = 331/561 (59%), Gaps = 38/561 (6%)

Query: 22  HGEWLLNSYAISVS--SSLSYAQ-LLF--NQIQNPQTQ---AWNSLIRAFAQSL-SPLQA 72
           H   +L  +A + S  +++ YA  +LF  +Q   P +     +N+LIRAFAQ+  S   A
Sbjct: 152 HNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIRAFAQTTHSKPHA 211

Query: 73  IFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR 132
           + +YN M   ++S P+ FTF F LKAC  +  L     +H  +++ G+E    V   L+ 
Sbjct: 212 LRFYNTMRRHAVS-PNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVH 270

Query: 133 GY------AANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            Y       ++G + +A+ VFD  P +D V+W+++I  Y +A     A+ L+  M+   V
Sbjct: 271 MYCCCCQDGSSGPV-SAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGV 329

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T+V +LS+CA +GAL +G +L         + SV + NAL+DM+AKCG++D A  
Sbjct: 330 CPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVK 389

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF  M+ R ++SW SMIVG  +HGRG EA+  F +M+  G  PD + F+G+L  CSH GL
Sbjct: 390 VFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGL 449

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTL 364
           V++G  YF+ M + +++ P I+HYGC+VD+  RAG++ +ALE +  + P +P  V+WR++
Sbjct: 450 VDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVR-AMPVEPNQVIWRSI 508

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
           + +C     +++GE   K L++ E +   +YVLL+ IYA     E   + R+++   G++
Sbjct: 509 VTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMR 568

Query: 425 TTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDESLVAVSGS 482
             PG + IE+ N++++FV  DKSH     IY  +EE+    K  GY  T  + L+ +   
Sbjct: 569 KIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEE 628

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
             ED L +    HSEKLAIAF L +TP GT +RIVKNLR            S  Y+R+++
Sbjct: 629 DKEDALYR----HSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIV 684

Query: 531 VRDRVRYHHFRDGLCSCGDYW 551
           VRDR R+HHF++GLCSCGD+W
Sbjct: 685 VRDRNRFHHFKNGLCSCGDFW 705


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/530 (38%), Positives = 318/530 (60%), Gaps = 26/530 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF+++ +    +W ++I A++ S    +A+ +   ML   + RP+ +T++  L+
Sbjct: 67  LDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGV-RPNMYTYSSVLR 125

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC+    L   ++LHG +++ G E  V V + L+  Y+  G    A +VF+ M   DLV 
Sbjct: 126 ACD---GLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVV 182

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNSII  + Q S   E L LY+RM+  D   D  TL  +L +C  +  L +G  +H    
Sbjct: 183 WNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVH--VH 240

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDVLSWNSMIVGYGVHGRGDEAI 276
            + + + + + NAL+DMY KCG+L+ A  +F+RM  ++DV+SW++MI G   +G   +A+
Sbjct: 241 VLKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADAL 300

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F+ M   G  P+ IT LG+L  CSH GLV +G  YF  M   + + PG +HYGC++DL
Sbjct: 301 KLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDL 360

Query: 337 YGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GRAGKL++A+++I+  +   D V WR LLG+C++H+NV++   A K +++L+ A AG Y
Sbjct: 361 LGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTY 420

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           +LL+ IYA ++  E VA  R+ +++ G+K  PG SWIE+  QVH F++ D SHP  + I 
Sbjct: 421 ILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIK 480

Query: 456 RKLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           R+L +++ R   +GY  D + V   + G   ED L+    YHSEKLAI FGL + P+  +
Sbjct: 481 RELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQ----YHSEKLAIVFGLMSLPNQKT 536

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + I KNLR            S   +R +++RD +RYHHFR G+CSCGDYW
Sbjct: 537 IHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 147/280 (52%), Gaps = 7/280 (2%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D  T++  +K C    A+ + + +H  V  +GYE    +   L+  Y   G+++ AR++F
Sbjct: 15  DAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLF 74

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D MP+R++VSW ++IS Y+ ++ + +AL     M  E V  + +T   +L +C   G LN
Sbjct: 75  DEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACD--GLLN 132

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           +   LH    ++G    V+V +AL+D Y+K G    A  VF+ M   D++ WNS+I G+ 
Sbjct: 133 LRQ-LHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFA 191

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +  GDE +  +K+M  A F  D  T   +L  C+   L+E G +  H+ V +Y+    +
Sbjct: 192 QNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQ-VHVHVLKYDQDLIL 250

Query: 328 KHYGCLVDLYGRAGKLEKA-LEVINTSSPSDPVLWRTLLG 366
            +   L+D+Y + G LE A L      +  D + W T++ 
Sbjct: 251 NN--ALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIA 288



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 112/269 (41%), Gaps = 27/269 (10%)

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           +K  E M    +  D  T   L+  C   GA+     +H      G+    ++ N L++M
Sbjct: 1   MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y K G LD A  +F  M  R+V+SW +MI  Y       +A+ F   ML  G  P+  T+
Sbjct: 61  YVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTY 120

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
             +L  C   GL+   +   H  + +  L+  +     L+D Y + G+   AL V N   
Sbjct: 121 SSVLRACD--GLL--NLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMI 176

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
             D V+W +++G                        S GD  L   +Y   K  + VA  
Sbjct: 177 TGDLVVWNSIIGG-------------------FAQNSDGDETL--HLYKRMKRADFVADQ 215

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
             L  ++ ++   G + +E+G QVH  V+
Sbjct: 216 STL--TSVLRACTGLALLELGRQVHVHVL 242


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/545 (37%), Positives = 308/545 (56%), Gaps = 33/545 (6%)

Query: 20  EIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM 79
           EI    LL   A   S SL+YA+ +F++I  P T  WN++IR ++ S  P +A+  Y+HM
Sbjct: 50  EIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHM 109

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           L  S+   + +TF F LKAC  + AL + Q++H  +I+ G+   +  + +L+  Y+ +G 
Sbjct: 110 LYHSVPH-NAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGD 168

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           I++AR +FD + +RD                  EAL L+ RM+   + LD   LV  L +
Sbjct: 169 IKSARLLFDQVDQRDT-----------------EALNLFHRMQTAGIKLDNVALVSTLQA 211

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           CA +G L+ G ++H    +        +G  L+DMYAKCG+L+ A  VF +M ++ V  W
Sbjct: 212 CADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVW 271

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
            +MI GY +HGRG EA+ +F +M  AG  P+ +TF G+L  CSH GLV E    F  M  
Sbjct: 272 TAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMER 331

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
            +  KP I+HYGC+VDL GRAG L++A E+I N     +  +W  LL +C IH N+E+G+
Sbjct: 332 IHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGK 391

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
              K L+Q++    G Y+ LA+I+A   +    AR R+ +K  G+   PG S I +    
Sbjct: 392 QIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTA 451

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           H+F+  D+SHP    I   LE+I+ R +  GY     L  +     +   E +  +HSEK
Sbjct: 452 HEFLAGDESHPQIKEIDHMLEQIVERLREEGYKP--KLGDLLLDLEDKEKETAIHHHSEK 509

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LA+ FGL +T  G ++RIVKNLR            S  Y+R++++RDR R+H F+DG C+
Sbjct: 510 LAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCT 569

Query: 547 CGDYW 551
           CGDYW
Sbjct: 570 CGDYW 574


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/566 (36%), Positives = 317/566 (56%), Gaps = 31/566 (5%)

Query: 11   GLNKARQAHEIHG------------EWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNS 58
            GLN +RQ H +H               L++ Y  S S  +  A+ LF    +     WN+
Sbjct: 1021 GLNISRQIH-VHALKTGNIADSFVATTLIDVY--SKSGKMEEAEFLFQNKDDLDLACWNA 1077

Query: 59   LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
            ++  +       +A+  ++ ++  S  + D  T     KAC  +  L++ +++H   I++
Sbjct: 1078 MMFGYIIGNDGKKALELFS-LIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKA 1136

Query: 119  GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
            G++  + V++ ++  Y   G +  A  VF+ +   D V+W S+IS         +AL++Y
Sbjct: 1137 GFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIY 1196

Query: 179  ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             RMR   V  D +T   L+ + + V AL  G  LH    ++  V   +VG +LVDMYAKC
Sbjct: 1197 HRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKC 1256

Query: 239  GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
            GN++ A+ +F +M  R++  WN+M+VG   HG  +EA++ FK M   G  PD ++F+G+L
Sbjct: 1257 GNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGIL 1316

Query: 299  CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSD 357
              CSH GL  E  EY H M + Y ++P I+HY CLVD  GRAG +++A +VI T    + 
Sbjct: 1317 SACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKAS 1376

Query: 358  PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
              + R LLG+C+I  +VE G+     L  LE   +  YVLL+ IYA     + V   RK+
Sbjct: 1377 ASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKM 1436

Query: 418  IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV 477
            +K   +K  PG+SWI++ N +H FVVDD+SHP AD+IY K+EE+M   +  GY  D   V
Sbjct: 1437 MKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFV 1496

Query: 478  AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
             +     E   E+S  YHSEKLAIA+GL +TP  T++R++KNLR            S  +
Sbjct: 1497 LLDVEDEEK--ERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVF 1554

Query: 526  SRDLIVRDRVRYHHFRDGLCSCGDYW 551
             R++++RD  R+HHFRDG+CSCGDYW
Sbjct: 1555 EREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 183/375 (48%), Gaps = 14/375 (3%)

Query: 12   LNKARQAHEIHGEWLLNSYAISVSSSLS----------YAQLLFNQIQNPQTQAWNSLIR 61
            L   +Q H I  +  L+S  +SV++SL           +A+ +FN +++    +WNS+I 
Sbjct: 920  LELGKQVHGIAVKSGLDS-DVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS 978

Query: 62   AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER-VKALNKCQELHGFVIRSGY 120
            + AQS    +++  +  +L   L +PD FT    L+AC   +  LN  +++H   +++G 
Sbjct: 979  SCAQSSLEEESVNLFIDLLHEGL-KPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGN 1037

Query: 121  ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
                 V+T L+  Y+ +G +E A  +F N  + DL  WN+++  Y   +   +AL+L+  
Sbjct: 1038 IADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSL 1097

Query: 181  MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
            +       D  TL     +C  +  L+ G  +H  A + GF   ++V + ++DMY KCG+
Sbjct: 1098 IHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGD 1157

Query: 241  LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
            + +A  VF+ +   D ++W SMI G   +G  D+A+  + +M  +   PD  TF  L+  
Sbjct: 1158 MVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKA 1217

Query: 301  CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
             S    +E+G +  H  V + +          LVD+Y + G +E A  +    +  +  L
Sbjct: 1218 SSCVTALEQGRQ-LHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIAL 1276

Query: 361  WRTLLGSCKIHRNVE 375
            W  +L     H N E
Sbjct: 1277 WNAMLVGLAQHGNAE 1291



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 162/358 (45%), Gaps = 10/358 (2%)

Query: 12   LNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ 71
            LN   + +   G+WL +          +YA  L     NP    WN  +     +     
Sbjct: 835  LNGVSEVNWDEGKWLADQVQ-------AYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWG 887

Query: 72   AIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131
            AI  + +M   ++   D  T    L A      L   +++HG  ++SG +  V V+ +L+
Sbjct: 888  AIECFVNMNGLNIDY-DAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLV 946

Query: 132  RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191
              Y+  G    AR VF++M   DL+SWNS+IS   Q+S   E++ L+  +  E +  D F
Sbjct: 947  NMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHF 1006

Query: 192  TLVCLLSSCAH-VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
            TL  +L +C+  +  LN+   +H  A + G +   +V   L+D+Y+K G ++ A  +F  
Sbjct: 1007 TLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQN 1066

Query: 251  MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
                D+  WN+M+ GY +   G +A+  F  +  +G   D IT       C    L+++G
Sbjct: 1067 KDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQG 1126

Query: 311  VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
             +  H    +      +     ++D+Y + G +  A  V N  S  D V W +++  C
Sbjct: 1127 KQ-IHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGC 1183



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 7/203 (3%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L KC   H  ++ SG      +S NL+  Y+  G + +AR VFD  PERDLV+WN+I+  
Sbjct: 639 LGKCT--HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGA 696

Query: 165 Y-----TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           Y     +      E L L+  +R         TL  +L  C + G L     +H  A ++
Sbjct: 697 YAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKI 756

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G    V+V  ALV++Y+KCG +  A  +F  MR+RDV+ WN M+ GY   G   EA   F
Sbjct: 757 GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLF 816

Query: 280 KQMLMAGFHPDSITFLGLLCGCS 302
            +   +G  PD  +   +L G S
Sbjct: 817 SEFHRSGLRPDEFSVQLILNGVS 839



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 157/387 (40%), Gaps = 35/387 (9%)

Query: 37   SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSP----LQAIFYYNHMLMASLSRPDTFTF 92
            SLS A+ +F+         WN+++ A+A S+       Q   +   +L ASL      T 
Sbjct: 671  SLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTL 730

Query: 93   TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
               LK C     L   + +HG+ I+ G E  V VS  L+  Y+  G +  AR +FD M E
Sbjct: 731  APVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRE 790

Query: 153  RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
            RD+V WN ++  Y Q     EA +L+       +  D F++  +L+  +           
Sbjct: 791  RDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVS----------- 839

Query: 213  HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
                 E+ + E  ++ + +    AK    D            DV  WN  +      G  
Sbjct: 840  -----EVNWDEGKWLADQVQAYAAKLSLSDD---------NPDVFCWNKKLSECLWAGDN 885

Query: 273  DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
              AI  F  M       D++T L +L   +    +E G +  H +  +  L   +     
Sbjct: 886  WGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQ-VHGIAVKSGLDSDVSVANS 944

Query: 333  LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAA 390
            LV++Y + G    A EV N     D + W +++ SC       + E ++   + L  E  
Sbjct: 945  LVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCA---QSSLEEESVNLFIDLLHEGL 1001

Query: 391  SAGDYVLLATIYACTKDEEGVARTRKL 417
                + L + + AC+   +G+  +R++
Sbjct: 1002 KPDHFTLASVLRACSSLIDGLNISRQI 1028



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV-----HGRGDEAISFFK 280
           ++ N L+ MY+KCG+L SA  VF    +RD+++WN+++  Y        G   E +  F+
Sbjct: 657 FLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFR 716

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLV--EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
            +  +      +T   +L  C + G +   EGV   H    +  L+  +   G LV++Y 
Sbjct: 717 LLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGV---HGYAIKIGLEWDVFVSGALVNIYS 773

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL 365
           + G++  A  + +     D VLW  +L
Sbjct: 774 KCGRMRDARLLFDWMRERDVVLWNMML 800


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/541 (37%), Positives = 319/541 (58%), Gaps = 19/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+ + A+S   S+ YA  +F Q+  P +  +N+++R   + ++  +A+  Y  M    + 
Sbjct: 26  LVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAERGV- 84

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +PD FT+   LKAC R+ A+ +  ++H  +++ G E  V V  +L+  Y   G I    +
Sbjct: 85  KPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCA 144

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV-GLDGFTLVCLLSSCAHVG 204
           VF+ M ER + SW+++I+ +       + L+L   M  E     +   LV +LS+C H+G
Sbjct: 145 VFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLG 204

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL++G  +H          +V V  +L++MY KCG L    C+F +M K++ LS++ MI 
Sbjct: 205 ALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMIS 264

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           G  +HG G E +  F +ML  G  PD I ++G+L  CSH GLV+EG++ F+ M   + ++
Sbjct: 265 GLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIE 324

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMK 382
           P I+HYGC+VDL GRAGK+++ALE+I  S P +P  VLWR+LL + K+H N++ GEIA K
Sbjct: 325 PTIQHYGCMVDLMGRAGKIDEALELIK-SMPMEPNDVLWRSLLSASKVHNNLQAGEIAAK 383

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            L +L++  A DYV+L+ +YA  +  E VARTR  + S G+   PG+S +E+  ++H+FV
Sbjct: 384 QLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFV 443

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             D  HP ++ +Y  L ++  + KF GY  D + V       E   ++  + HS+KLAIA
Sbjct: 444 SQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEK--KQRLSGHSQKLAIA 501

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           + L  T  G+ +RIV+NLR            SI + R++ VRDR R+HHF+DG CSC DY
Sbjct: 502 YALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDY 561

Query: 551 W 551
           W
Sbjct: 562 W 562



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 80/193 (41%), Gaps = 28/193 (14%)

Query: 237 KCGNLDSAFC---------------------VFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           K G    +FC                     +F +M +     +N+M+ G+      +EA
Sbjct: 13  KXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEA 72

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  +K+M   G  PD+ T+  LL  C+    VEEG++  H  + +  L+  +     L+ 
Sbjct: 73  LITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQ-VHAHILKLGLENDVFVQNSLIS 131

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS---A 392
           +YG+ G++     V    +      W  L+ +   H ++ +    ++ L  +       A
Sbjct: 132 MYGKCGEIGVCCAVFEQMNERSVASWSALITA---HASLGMWSDCLRLLGDMSNEGYWRA 188

Query: 393 GDYVLLATIYACT 405
            + +L++ + ACT
Sbjct: 189 EESILVSVLSACT 201


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/511 (38%), Positives = 300/511 (58%), Gaps = 18/511 (3%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WNSLI    +      A+ ++  M    + + D +T    L +   +K +     +H  
Sbjct: 8   SWNSLILGCVREGFEEDALSFFQKMRSRDM-KIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           +I++G+E   +V+  L+  YA  G ++ A  VF  M ++D+VSW S+++ Y+    + EA
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           +KL+ +MR   V  D   +  +LS+CA +  ++ G  +H    + G   S+ V N+LV M
Sbjct: 127 IKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTM 186

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAKCG++  A   F  M  RDV+SW ++IVGY  +GRG  ++ F+ QM+  G  PD ITF
Sbjct: 187 YAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITF 246

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN--T 352
           +GLL  CSH GL+  G  YF  M   Y +KPG +HY C++DL GR+GKL +A  ++N   
Sbjct: 247 IGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMV 306

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
            +P D V+W+ LL +C++H+ +E+GE+A KNL +LE  ++  YV+L+ +Y+     E  A
Sbjct: 307 VAP-DAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAA 365

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           R R+L++S GI   PG+SWIE  ++V  F+ +D++HP  + IY K++EI+   K  GY  
Sbjct: 366 RIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVP 425

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           D S       + ++  E   AYHSEKLA+AFGL T P G  +RI KNLR           
Sbjct: 426 DMSFAL--HDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKY 483

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S  Y+R +I+RD   +HHF +G CSCGDYW
Sbjct: 484 TSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 144/280 (51%), Gaps = 11/280 (3%)

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           D VSWNS+I    +  F  +AL  +++MR  D+ +D +TL  +L+S A +  +   I +H
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            +  + GF     V NAL+DMYAK G LD A  VFS+M  +DV+SW S++ GY  +G  +
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           EAI  F +M ++G +PD I    +L  C+   +++ G +  H  + +  L+  +     L
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFG-QQIHATLVKSGLESSLSVDNSL 183

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQLEA-AS 391
           V +Y + G +  A    +     D + W  L+ G  +  R    G+ +++   Q+ A  +
Sbjct: 184 VTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGR----GKHSLQFYDQMIATGT 239

Query: 392 AGDYV-LLATIYACTKD---EEGVARTRKLIKSNGIKTTP 427
             DY+  +  ++AC+ +     G A    + K  GIK  P
Sbjct: 240 KPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGP 279



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 148/335 (44%), Gaps = 42/335 (12%)

Query: 17  QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYY 76
           +A+++    L++ YA      L  A ++F+++ +    +W SL+  ++ + S  +AI  +
Sbjct: 73  EAYKLVNNALIDMYA--KQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLF 130

Query: 77  NHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136
             M ++ +  PD       L AC  +  ++  Q++H  +++SG E  + V  +L+  YA 
Sbjct: 131 CKMRISGV-YPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAK 189

Query: 137 NGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCL 196
            G I  A   FDNMP RD++SW ++I  Y Q      +L+ Y++M       D  T + L
Sbjct: 190 CGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGL 249

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           L +C+H G L  G           + E+                +D  + +     K   
Sbjct: 250 LFACSHNGLLGSG---------RAYFEA----------------MDKVYGI-----KPGP 279

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
             +  MI   G  G+  EA     QM++A   PD++ +  LL  C     V + +E   M
Sbjct: 280 EHYACMIDLLGRSGKLAEAKGLLNQMVVA---PDAVVWKALLAACR----VHKELELGEM 332

Query: 317 MVSR-YNLKP-GIKHYGCLVDLYGRAGKLEKALEV 349
                + L+P     Y  L ++Y  AGK E A  +
Sbjct: 333 AAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARI 367


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/580 (35%), Positives = 319/580 (55%), Gaps = 65/580 (11%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSP---LQAIFYYNHMLMASLSRPDTFT 91
           S  + YA+ +F Q+  P    WN+++R  A++       +A+  ++ ML     +P+ FT
Sbjct: 65  SRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFT 124

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE---------- 141
           F   LKAC R   L + +++HG +++ G+     V +NL+R Y    V+E          
Sbjct: 125 FPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNV 184

Query: 142 -------------------------------------AARSVFDNMPERDLVSWNSIISC 164
                                                +A+++FD MP R +VSWN +IS 
Sbjct: 185 VDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISG 244

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
           Y Q    +EA+ L++ M+  ++  +  TLV +L + A +GAL +G ++H  A +      
Sbjct: 245 YAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEID 304

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
             +G+ALVDMY+KCG++D A  VF  + KR+ ++W+++I  + +HGR ++AI  F  M  
Sbjct: 305 DVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGK 364

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
           AG  P+ + ++G+L  CSH GLVEEG  +F  MV    L+P I+HYGC+VDL GRAG LE
Sbjct: 365 AGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLE 424

Query: 345 KALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403
           +A E+I N     D V+W+ LLG+CK+H+N+++GE   + L++L    +G YV L+ +YA
Sbjct: 425 EAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYA 484

Query: 404 CTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMH 463
              + E VAR R  +K   I+  PG SWIEI   +H+F+V+D SH  A  I   L E+  
Sbjct: 485 SLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSM 544

Query: 464 RAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-- 521
           + +  GY  +   + V  ++ E    ++  YHSEK+A+AFGL +T     L+IVKNLR  
Sbjct: 545 KLRSNGYRPNT--LEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRIC 602

Query: 522 ----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                     S+ Y R +IVRDR R+H F  G CSC DYW
Sbjct: 603 EDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/540 (36%), Positives = 323/540 (59%), Gaps = 17/540 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           +L + A+S  +S+ YA  +F Q+  P T  +N++IR +  +++   AI+ YN ML   + 
Sbjct: 70  VLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREV- 128

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD FT+   LKAC R+  + +  ++HG V + G E  V V  +L+  Y     IE + +
Sbjct: 129 EPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCA 188

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV-GLDGFTLVCLLSSCAHVG 204
           +F  M ++ + SW++II+ +   +   E L L+E M  E     +   LV +LS+C H+G
Sbjct: 189 IFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLG 248

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           A ++G   H    +     +V V  +L+DMY KCG+L    C+F  M +++ LS++ +I 
Sbjct: 249 AFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIIS 308

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           G G+HG G +A+  F +M+  G  PD +T++ +L  CSH GLV+EG++ F  M   Y ++
Sbjct: 309 GLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIE 368

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
           P ++HYGC+VDL GRAG LE+A +++ +    ++ VLWR+LL +CK+H N+++GEIA +N
Sbjct: 369 PTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAEN 428

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           L +L + +  DY++L+ +YA  +  E  A+ R  + + G+  TPG+S +E+ ++V+KFV 
Sbjct: 429 LFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVKSKVYKFVS 488

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
            DKS+  +  IY+ + ++  + +F GY  D S V +     E    +    HS+KLAIAF
Sbjct: 489 QDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEK--GERLKGHSQKLAIAF 546

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            L  T  G+++RI++NLR            S+ Y R++ VRDR R+HHF+DG CSC DYW
Sbjct: 547 ALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHFKDGNCSCRDYW 606



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 23/148 (15%)

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF---------------------F 279
           LDS FC  S +    +  WNSM     +  + DE  +F                     +
Sbjct: 62  LDS-FCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLY 120

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
             ML     PD+ T+  +L  C+   +++EG++  H  V +  L+  +     L+++YG+
Sbjct: 121 NDMLQREVEPDNFTYPVVLKACARLAVIQEGMQ-IHGHVFKLGLEDDVYVQNSLINMYGK 179

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGS 367
              +E +  +           W  ++ +
Sbjct: 180 CRDIEMSCAIFRRMEQKSVASWSAIIAA 207


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/554 (38%), Positives = 312/554 (56%), Gaps = 49/554 (8%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F  I      +WNS+I AF Q   P +A+  +  M   ++ +P+  T    L AC +  
Sbjct: 193 VFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNV-KPNGITMVGVLSACAKKS 251

Query: 104 ALNKCQELHGFVIRSG--------------YERC-----------------VVVSTNLMR 132
                + +H ++ R+               Y +C                 +V  T ++ 
Sbjct: 252 DFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLV 311

Query: 133 GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG-LDGF 191
           GYA  G  +AA+ +FD MP +D+ +WN++IS Y Q     EAL+L+  ++       D  
Sbjct: 312 GYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEV 371

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           TLV  LS+CA +GA+++G ++H    + G   + ++  +L+DMY KCG+L  A  VF  +
Sbjct: 372 TLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSV 431

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
            ++DV  W++MI G  +HG G +AI+ F +M      P+++TF  +LC CSH GLVEEG 
Sbjct: 432 ERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGR 491

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCK 369
            +F+ M   Y + PG+KHY C+VD+ GRAG LE+A+E+I    P  P   +W  LLG+C 
Sbjct: 492 TFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIE-KMPMAPAASVWGALLGACT 550

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           IH NV + E A   L++LE  + G YVLL+ IYA     + V+  RKL++  G+K  PG 
Sbjct: 551 IHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGC 610

Query: 430 SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
           S IE+   VH+F+V D SHP A  IY KL+EI+ R + IGY  ++S + +     ED  E
Sbjct: 611 SSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHL-LQLVEEEDVKE 669

Query: 490 KSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------SIA------YSRDLIVRDRVRY 537
           ++   HSEKLAIAFGL +T     +RIVKNLR      S+A      Y R++++RDR R+
Sbjct: 670 QALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRF 729

Query: 538 HHFRDGLCSCGDYW 551
           HHFR+G CSC DYW
Sbjct: 730 HHFREGHCSCMDYW 743



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 192/378 (50%), Gaps = 33/378 (8%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+ + A+S   SL YAQ +F+QI +P    WN+LIRA+A S +P Q++  +  ML  S  
Sbjct: 73  LITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPD 132

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD FTF F +KA   ++ L   +  HG VI+      V +  +L+  YA  G +     
Sbjct: 133 FPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYR 192

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF N+P RD+VSWNS+I+ + Q     EAL+L++ M  ++V  +G T+V +LS+CA    
Sbjct: 193 VFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSD 252

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
              G ++H         ES+ + NA++DMY KCG+++ A  +F +M ++D++SW +M+VG
Sbjct: 253 FEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVG 312

Query: 266 YGVHGRGDEAISFFKQM-----------------------LMAGFH---------PDSIT 293
           Y   G  D A   F  M                        +  FH         PD +T
Sbjct: 313 YAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVT 372

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
            +  L  C+  G ++ G  + H+ + +  +K        L+D+Y + G L+KAL V ++ 
Sbjct: 373 LVSTLSACAQLGAMDLG-GWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSV 431

Query: 354 SPSDPVLWRTLLGSCKIH 371
              D  +W  ++    +H
Sbjct: 432 ERKDVFVWSAMIAGLAMH 449



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 140/280 (50%), Gaps = 5/280 (1%)

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV--IEAARSVFDNMPE 152
           TL   ++     + +++H  ++R+G       ++ L+   A +    ++ A+ VFD +P 
Sbjct: 38  TLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPH 97

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL-DGFTLVCLLSSCAHVGALNMGIF 211
            +L +WN++I  Y  +S   ++L ++ RM  +     D FT   L+ + + +  L  G  
Sbjct: 98  PNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKA 157

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
            H +  ++     V++ N+L+  YAKCG L   + VF  + +RDV+SWNSMI  +   G 
Sbjct: 158 FHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGC 217

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
            +EA+  F++M      P+ IT +G+L  C+ +   E G  + H  + R  +   +    
Sbjct: 218 PEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFG-RWVHSYIERNRIGESLTLSN 276

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKI 370
            ++D+Y + G +E A  + +     D V W T+L G  KI
Sbjct: 277 AMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKI 316



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 118/231 (51%), Gaps = 2/231 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQ +F+ + N    AWN+LI A+ Q   P +A+  ++ + ++  ++PD  T   TL AC 
Sbjct: 322 AQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACA 381

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++ A++    +H ++ + G +    ++T+L+  Y   G ++ A  VF ++  +D+  W++
Sbjct: 382 QLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSA 441

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIACEM 219
           +I+         +A+ L+ +M+ + V  +  T   +L +C+HVG +  G  F +++    
Sbjct: 442 MIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVY 501

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSMIVGYGVH 269
           G +  V     +VD+  + G L+ A  +  +M      S W +++    +H
Sbjct: 502 GVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIH 552


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/509 (39%), Positives = 309/509 (60%), Gaps = 20/509 (3%)

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           +IR   +S      + +Y+ ML   +  P   +F+  L++C         +  H  +++ 
Sbjct: 1   MIRVSLESGVCPDFLGFYSGMLRNDV-LPSKTSFSLILRSCAISGEAQLGEAFHCQIMKM 59

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL--VSWNSIISCYTQASFHLEALK 176
           G+E  +++ T L+  YA +G +E AR++FDNM ER+   V+WN++IS Y Q      A+ 
Sbjct: 60  GFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAIS 119

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           ++++M+ E+V     T+V LLS+CAH+GAL+MG ++H           V +GNAL+DMY 
Sbjct: 120 MFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYC 179

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           KCG L++A  VF  + ++++  WNS+IVG G++GRG+EAI+ F  M   G  PD +TF+G
Sbjct: 180 KCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVG 239

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
           +L GCSH GL+  G  YF  M+  Y L+PG++HYGC+VDL GRAG L++ALE+I  + P 
Sbjct: 240 ILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIR-AMPM 298

Query: 357 DP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
            P  ++  +LL +C+IH++ ++GE   + L++L+    G+YV L+ +YA     + V   
Sbjct: 299 KPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTC 358

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
           RKL+   G+  TPG S IE+ N VH+FV  D SHP    I   L+EI    K  G+  + 
Sbjct: 359 RKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNT 418

Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
           +   V     E+  E +  YHSE++A+AFGL +TP G ++R+VKNLR            S
Sbjct: 419 A--NVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLIS 476

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            A+ R++IVRDR R+HHFR+G CSC DYW
Sbjct: 477 NAFKREIIVRDRKRFHHFRNGSCSCNDYW 505


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/504 (42%), Positives = 297/504 (58%), Gaps = 49/504 (9%)

Query: 68  SPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
           +PL+ +F  N ML A +SR +           E  K  +      G  +R       +VS
Sbjct: 18  APLRDVFLCNVMLAAYVSRSEV---------AEARKVFD------GMPMRD------LVS 56

Query: 128 TNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            N M  GYA  G +  AR +FD   +RD  SW+S+IS Y ++    EAL+L+  M    +
Sbjct: 57  WNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASI 116

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES------VYVGNALVDMYAKCGN 240
             D  TLV ++S+C+ +GAL +G  +HR      FVES      + +G AL+DMYAKCG+
Sbjct: 117 IPDCITLVSVVSACSDLGALAVGAEVHR------FVESNRIELDLKLGTALIDMYAKCGD 170

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           ++SA  VF RM ++DV +W+SMI+G   HG G E++S F +M+  G  P+ +TF+G+L  
Sbjct: 171 IESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIA 230

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPV 359
           C+H GLV EG +YF  M   + ++P ++HYGC+VDL GR+G +E+A ++I + +   D +
Sbjct: 231 CTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTI 290

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
           +WR LLG+C+IH+NVEI E AM  L  L+    G YVLL+ IYA     EGVA  RK I+
Sbjct: 291 IWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIR 350

Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
            + I+  PG S IE   ++H+FV  D+ HP +  IYR LEE+M R K  GY     LV  
Sbjct: 351 RDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVL- 409

Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
                E   E+S A HSEKLAIAF L TTP  +++RI KNLR            S+ Y R
Sbjct: 410 -QDIDEQSKERSLAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDR 468

Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
            LIVRDR R+HHF +G CSC DYW
Sbjct: 469 KLIVRDRNRFHHFSEGQCSCKDYW 492



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 145/330 (43%), Gaps = 40/330 (12%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           W    +  ++   +  A+ +F+  ++    +W+S+I A+A+S    +A+  +  M  AS+
Sbjct: 57  WNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASI 116

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
             PD  T    + AC  + AL    E+H FV  +  E  + + T L+  YA  G IE+A+
Sbjct: 117 I-PDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQ 175

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VFD MPE+D+ +W+S+I          E+L L+ +M  E +  +G T V +L +C HVG
Sbjct: 176 RVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVG 235

Query: 205 ALNMGIFLHRIACEM-GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
            ++ G    R   E+ G   +V     +VD+  + G++                      
Sbjct: 236 LVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHV---------------------- 273

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
                    +EA    + M    F PD+I +  LL  C     VE   E    M     L
Sbjct: 274 ---------EEARQLIRSMT---FEPDTIIWRALLGACRIHKNVEIAEE---AMAKLRVL 318

Query: 324 KP-GIKHYGCLVDLYGRAGKLEKALEVINT 352
            P G  HY  L ++Y +A   E   E+  T
Sbjct: 319 DPLGDGHYVLLSNIYAQANSWEGVAEMRKT 348


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/539 (41%), Positives = 308/539 (57%), Gaps = 19/539 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  SV +SL  A  LF++I       WN LIRA+A +     AI  Y+ ML   L 
Sbjct: 99  LVNFY--SVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGL- 155

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +PD FT  F LKAC  +  + + + +H  VIRSG+ER V V   L+  YA  G +  AR 
Sbjct: 156 KPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARH 215

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD + +RD V WNS+++ Y Q     E+L L   M  + V     TLV ++SS A +  
Sbjct: 216 VFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIAC 275

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H      GF  +  V  AL+DMYAKCG++  A  +F R+R++ V+SWN++I G
Sbjct: 276 LPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITG 335

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y +HG   EA+  F++M M    PD ITF+G L  CS   L++EG   +++MV    + P
Sbjct: 336 YAMHGLAVEALDLFERM-MKEAQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINP 394

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            ++HY C+VDL G  G+L++A ++I       D  +W  LL SCK H NVE+ E+A++ L
Sbjct: 395 TVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKL 454

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           ++LE   +G+YV+LA +YA +   EGVAR R+L+   GIK     SWIE+ N+V+ F+  
Sbjct: 455 IELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSG 514

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D SHP++  IY +L+ +    +  GY  D    +V     ED        HSE+LAIAFG
Sbjct: 515 DVSHPNSGAIYAELKRLEGLMREAGYVPDTG--SVFHDVEEDEKTDMVCSHSERLAIAFG 572

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L +T  GT L I KNLR            S    R++ VRD  RYHHFR GLCSCGDYW
Sbjct: 573 LISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 178/401 (44%), Gaps = 27/401 (6%)

Query: 45  FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP----DTFT--------F 92
           F+ I+  Q  +    I +F+ +L P+   +Y+ H   A+   P    D+F         +
Sbjct: 3   FSSIRKTQETSRILSILSFSLNLFPVSP-YYFLHQSFATQLIPQHKVDSFPSSPSNHYYY 61

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              L++C   KAL   ++LH  + + G    + ++T L+  Y+    +  A  +FD +P+
Sbjct: 62  ASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPK 121

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
            +L  WN +I  Y     H  A+ LY +M    +  D FTL  +L +C+ +  +  G  +
Sbjct: 122 GNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVI 181

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H      G+   V+VG ALVDMYAKCG +  A  VF ++  RD + WNSM+  Y  +G  
Sbjct: 182 HERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHP 241

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           DE++S   +M   G  P   T + ++   +    +  G E  H    R+  +   K    
Sbjct: 242 DESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGRE-IHGFGWRHGFQYNDKVKTA 300

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH----RNVEIGEIAMKNLVQLE 388
           L+D+Y + G ++ A  +         V W  ++    +H      +++ E  MK      
Sbjct: 301 LIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKE----- 355

Query: 389 AASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTT 426
            A       +  + AC++    +EG A    +++   I  T
Sbjct: 356 -AQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPT 395


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/540 (36%), Positives = 313/540 (57%), Gaps = 23/540 (4%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD---- 88
           S    L  A+ +F++I      +W S+IR +  + + L A+  +  +L+      D    
Sbjct: 122 STCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFL 181

Query: 89  -TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA--ANGVIEAARS 145
            +      + AC RV A    + +H FVI+ G++R V V   L+  YA    G +  AR 
Sbjct: 182 DSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARK 241

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVG 204
           +FD + ++D VS+NSI+S Y Q+    EA +++ R+ + + V  +  TL  +L + +H G
Sbjct: 242 IFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSG 301

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL +G  +H     MG  + V VG +++DMY KCG +++A   F RM+ ++V SW +MI 
Sbjct: 302 ALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIA 361

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GYG+HG   +A+  F  M+ +G  P+ ITF+ +L  CSH GL  EG  +F+ M  R+ ++
Sbjct: 362 GYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVE 421

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
           PG++HYGC+VDL GRAG L+KA ++I       D ++W +LL +C+IH+NVE+ EI++  
Sbjct: 422 PGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVAR 481

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           L +L++++ G Y+LL+ IYA     + V R R ++K+ G+   PG+S +E+  +VH F++
Sbjct: 482 LFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLI 541

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
            D+ HP  + IY  L E+  +    GY  + S  +V     E+  E +   HSEKLAIAF
Sbjct: 542 GDEEHPQREKIYEFLAELNRKLLEAGYVSNTS--SVCHDVDEEEKEMTLRVHSEKLAIAF 599

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G+  T  G+++ +VKNLR            S    R+ +VRD  R+HHF+DG CSCGDYW
Sbjct: 600 GIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 167/338 (49%), Gaps = 12/338 (3%)

Query: 44  LFNQ-IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
           LFN+ +      +WNS+I   A+S    +A+  ++ M   SL  P   +F   +KAC  +
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLY-PTRSSFPCAIKACSSL 89

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
             +   ++ H      GY+  + VS+ L+  Y+  G +E AR VFD +P+R++VSW S+I
Sbjct: 90  FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149

Query: 163 SCYTQASFHLEALKLYERMRFED------VGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
             Y      L+A+ L++ +  ++      + LD   LV ++S+C+ V A  +   +H   
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFC--VFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            + GF   V VGN L+D YAK G    A    +F ++  +D +S+NS++  Y   G  +E
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269

Query: 275 AISFFKQMLMAGFHP-DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           A   F++++       ++IT   +L   SH G +  G +  H  V R  L+  +     +
Sbjct: 270 AFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIG-KCIHDQVIRMGLEDDVIVGTSI 328

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +D+Y + G++E A +  +     +   W  ++    +H
Sbjct: 329 IDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMH 366



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 122/249 (48%), Gaps = 2/249 (0%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL++YA      ++ A+ +F+QI +    ++NS++  +AQS    +A   +  ++  
Sbjct: 221 GNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKN 280

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +   +  T +  L A     AL   + +H  VIR G E  V+V T+++  Y   G +E 
Sbjct: 281 KVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVET 340

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR  FD M  +++ SW ++I+ Y       +AL+L+  M    V  +  T V +L++C+H
Sbjct: 341 ARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSH 400

Query: 203 VGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWN 260
            G    G  + + +    G    +     +VD+  + G L  A+ +  RM+ K D + W+
Sbjct: 401 AGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWS 460

Query: 261 SMIVGYGVH 269
           S++    +H
Sbjct: 461 SLLAACRIH 469


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/536 (40%), Positives = 315/536 (58%), Gaps = 26/536 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ-AIFYYNHMLMASLSRPDTFTFTFTL 96
           L YA  +F+QI+NP +  WN+LIRA A+S    Q AI  Y+ ML       D  TF F L
Sbjct: 76  LRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVL 135

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           KAC  + AL++ +++H  +++ G++  V ++ +L+  YA    ++ A+ VFD M ER LV
Sbjct: 136 KACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLV 195

Query: 157 SWNSIISCYTQASFHLEALKLYERMR--FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           SWN +I  + +      AL L+  M+  FE    DG+T+  + ++CA +G+L++G++ H 
Sbjct: 196 SWNVVIDAFVRFGEFDAALNLFGEMQKFFEP---DGYTIQSIANACAGMGSLSLGMWAHV 252

Query: 215 IAC---EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
                 +   V  V +  +LVDMY KCG+L+ A  +F RM KRDV SWNSMI+G+  HG 
Sbjct: 253 FLLKKFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGE 312

Query: 272 GDEAISFFKQMLMA-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
              A+ +F  M+      P++ITF+G+L  C+H GLV EG  YF +MV+ Y +KP ++HY
Sbjct: 313 VAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHY 372

Query: 331 GCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGS-CKIHRNVEIGEIAMKNLVQLE 388
           GCLVDL  RAG +++AL+V+ N     D V+WR+LL + CK +  VE+ E   + +++ E
Sbjct: 373 GCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAE 432

Query: 389 AA-SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKS 447
               +G YVLL+ +YA       V   RKL+   G+   PG S IEI    H+F   D S
Sbjct: 433 GGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTS 492

Query: 448 HPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLAT 507
           HP  + IY  L+ I  R + +GY+ D S   +   +  D  + S   HSE+LAIAFGL  
Sbjct: 493 HPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETI-DGKQYSLRLHSERLAIAFGLLK 551

Query: 508 TPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           T  G  +RI KNLR            S  ++R++IVRDR+R+HHF+DG CSC DYW
Sbjct: 552 TKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 607



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 28/159 (17%)

Query: 26  LLNSYAISV---SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           LLN+  + +     SL  A  LF+++      +WNS+I  F+       A+ Y+  M+  
Sbjct: 267 LLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRT 326

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN------------L 130
               P+  TF   L AC            HG ++  G     V+ T             L
Sbjct: 327 EKLMPNAITFVGVLSACN-----------HGGLVSEGRRYFDVMVTEYKIKPELEHYGCL 375

Query: 131 MRGYAANGVIEAARSVFDNMPER-DLVSWNSII-SCYTQ 167
           +   A  G+I+ A  V  NMP R DLV W S++ +C  Q
Sbjct: 376 VDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQ 414


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/525 (39%), Positives = 310/525 (59%), Gaps = 17/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+ ++ P   A+N+LI  ++ +     ++  +  ++   L  P++ T    +    
Sbjct: 266 ARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGL-WPNSSTLVALIPVHS 324

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
                   Q LHGFV++SG+     VST +   +     +E+AR  FD MPE+ + SWN+
Sbjct: 325 PFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNA 384

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y Q      A+ L+E+M   +V  +  T+   LS+CA +GAL++G +LHRI  E  
Sbjct: 385 MISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEED 444

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              +VYV  AL+DMYAKCG++  A  +F+ M  ++V+SWN+MI GYG+HG+G EA+  +K
Sbjct: 445 LEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYK 504

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            ML A   P S TFL +L  CSH GLVEEG + F  M   Y + PGI+H  C+VDL GRA
Sbjct: 505 DMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRA 564

Query: 341 GKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G+L++A E+I+    S   P +W  LLG+C +H++ ++ ++A + L +L+  ++G YVLL
Sbjct: 565 GQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLL 624

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + ++   K     A  R+  KS  +  TPG++ IEIGN+ H F+  D++HP ++ IY  L
Sbjct: 625 SNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYL 684

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           E++  +    GY + E+  A+     E+  E     HSEKLAIAFGL +T  GT +RI+K
Sbjct: 685 EKLTAKMIEAGY-RPETEAALYDVEEEE-KEHMVKVHSEKLAIAFGLLSTEPGTEIRIIK 742

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S    R ++VRD  R+HHFRDG+CSCGDYW
Sbjct: 743 NLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 188/400 (47%), Gaps = 15/400 (3%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93
           V S + +A+ +F+ + +P T  WN+L+   + S    +A+  +  M+     RPD  T  
Sbjct: 161 VLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVCDGSVRPDATTLA 216

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
             L A   V  +   + +H F  + G      V T L+  Y+  G +E+AR +FD M + 
Sbjct: 217 SVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKP 276

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           DLV++N++IS Y+       ++ L+  +    +  +  TLV L+   +  G   +   LH
Sbjct: 277 DLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLH 336

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
               + GF  +  V  A+  ++ +  +++SA   F  M ++ + SWN+MI GY  +G  +
Sbjct: 337 GFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTE 396

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
            A++ F+QM+     P+ IT    L  C+  G +  G ++ H +++  +L+P +     L
Sbjct: 397 MAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLG-KWLHRIITEEDLEPNVYVMTAL 455

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV--QLEAAS 391
           +D+Y + G + +A  + NT    + V W  ++    +H          K+++   L   S
Sbjct: 456 IDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTS 515

Query: 392 AGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTTPG 428
           A     L+ +YAC+     EEG    R +     I   PG
Sbjct: 516 A---TFLSVLYACSHGGLVEEGWKVFRSMTDDYAIN--PG 550



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 133/263 (50%), Gaps = 24/263 (9%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV- 102
           LF     P     N+L+R+   SL P + +F            PD+F+F F   +   + 
Sbjct: 74  LFRGFPRPDRFLRNALLRSL-PSLRP-RLLF----------PCPDSFSFAFAATSLAALC 121

Query: 103 ------KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
                  + +  + LH   + +GY     V++ L + Y     ++ AR VFD +P  D V
Sbjct: 122 SRGGGAASSSAARALHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVPSPDTV 181

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
            WN++++  + +    EA++ + RM  +  V  D  TL  +L + A V  + MG  +H  
Sbjct: 182 LWNTLLAGLSGS----EAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSF 237

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A + G  E  +V   L+ +Y+KCG+++SA C+F  M K D++++N++I GY V+G    +
Sbjct: 238 AEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSS 297

Query: 276 ISFFKQMLMAGFHPDSITFLGLL 298
           ++ F +++  G  P+S T + L+
Sbjct: 298 VNLFTELMTLGLWPNSSTLVALI 320


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/540 (36%), Positives = 313/540 (57%), Gaps = 23/540 (4%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD---- 88
           S    L  A+ +F++I      +W S+IR +  + + L A+  +  +L+      D    
Sbjct: 122 STCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFL 181

Query: 89  -TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA--ANGVIEAARS 145
            +      + AC RV A    + +H FVI+ G++R V V   L+  YA    G +  AR 
Sbjct: 182 DSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARK 241

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVG 204
           +FD + ++D VS+NSI+S Y Q+    EA +++ R+ + + V  +  TL  +L + +H G
Sbjct: 242 IFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSG 301

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL +G  +H     MG  + V VG +++DMY KCG +++A   F RM+ ++V SW +MI 
Sbjct: 302 ALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIA 361

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GYG+HG   +A+  F  M+ +G  P+ ITF+ +L  CSH GL  EG  +F+ M  R+ ++
Sbjct: 362 GYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVE 421

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
           PG++HYGC+VDL GRAG L+KA ++I       D ++W +LL +C+IH+NVE+ EI++  
Sbjct: 422 PGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVAR 481

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           L +L++++ G Y+LL+ IYA     + V R R ++K+ G+   PG+S +E+  +VH F++
Sbjct: 482 LFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLI 541

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
            D+ HP  + IY  L E+  +    GY  + S  +V     E+  E +   HSEKLAIAF
Sbjct: 542 GDEEHPQREKIYEFLAELNRKLLEAGYVSNTS--SVCHDVDEEEKEMTLRVHSEKLAIAF 599

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G+  T  G+++ +VKNLR            S    R+ +VRD  R+HHF+DG CSCGDYW
Sbjct: 600 GIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 167/338 (49%), Gaps = 12/338 (3%)

Query: 44  LFNQ-IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
           LFN+ +      +WNS+I   A+S    +A+  ++ M   SL  P   +F   +KAC  +
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLY-PTRSSFPCAIKACSSL 89

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
             +   ++ H      GY+  + VS+ L+  Y+  G +E AR VFD +P+RD+VSW S+I
Sbjct: 90  FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMI 149

Query: 163 SCYTQASFHLEALKLYERMRFED------VGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
             Y      L+A+ L++ +  ++      + LD   LV ++S+C+ V A  +   +H   
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFC--VFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            + GF   V VGN L+D YAK G    A    +F ++  +D +S+NS++  Y   G  +E
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269

Query: 275 AISFFKQMLMAGFHP-DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           A   F++++       ++IT   +L   SH G +  G +  H  V R  L+  +     +
Sbjct: 270 AFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIG-KCIHDQVIRMGLEDDVIVGTSI 328

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +D+Y + G++E A +  +     +   W  ++    +H
Sbjct: 329 IDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMH 366



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 122/249 (48%), Gaps = 2/249 (0%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL++YA      ++ A+ +F+QI +    ++NS++  +AQS    +A   +  ++  
Sbjct: 221 GNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKN 280

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +   +  T +  L A     AL   + +H  VIR G E  V+V T+++  Y   G +E 
Sbjct: 281 KVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVET 340

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR  FD M  +++ SW ++I+ Y       +AL+L+  M    V  +  T V +L++C+H
Sbjct: 341 ARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSH 400

Query: 203 VGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWN 260
            G    G  + + +    G    +     +VD+  + G L  A+ +  RM+ K D + W+
Sbjct: 401 AGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWS 460

Query: 261 SMIVGYGVH 269
           S++    +H
Sbjct: 461 SLLAACRIH 469



 Score = 45.1 bits (105), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 7/166 (4%)

Query: 247 VFSR-MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
           +F+R + K DV SWNS+I      G   EA+  F  M     +P   +F   +  CS   
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +  G +  H     +  +  I     L+ +Y   GKLE A +V +     D V W +++
Sbjct: 91  DIFSGKQT-HQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMI 149

Query: 366 GSCKIHRNVEIGEIAMKNLVQLE-----AASAGDYVLLATIYACTK 406
               ++ N        K+L+  E     A       L++ I AC++
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSR 195


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/444 (44%), Positives = 275/444 (61%), Gaps = 15/444 (3%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           E+ +V  T ++  YA +G ++AAR +FD M ERD V WN +I  YTQ     EAL L+ R
Sbjct: 121 EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRR 180

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M       +  T++ +LS+C  +GAL  G ++H      G   +V+VG ALVDMY+KCG+
Sbjct: 181 MLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 240

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           L+ A  VF ++  +DV++WNSMIVGY +HG   EA+  FK M   G HP +ITF+G+L  
Sbjct: 241 LEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSA 300

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPV 359
           C H G V EG + F+ M   Y ++P I+HYGC+V+L GRAG +E+A E++ N +   DPV
Sbjct: 301 CGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPV 360

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
           LW TLLG+C++H  + +GE  ++ LV    A++G Y+LL+ IYA   + +GVAR R ++K
Sbjct: 361 LWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMK 420

Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
            +G+K  PG S IE+ N+VH+F+    +HP    IY  LEEI    K  GYT    +V  
Sbjct: 421 DSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLH 480

Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIA------------YSR 527
               +E   E+S   HSEKLAIAFGL  T  GT+++IVKNLR  A              R
Sbjct: 481 DIGETEK--ERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGR 538

Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
            ++VRDR R+HHF +G CSCGDYW
Sbjct: 539 KIVVRDRNRFHHFVNGSCSCGDYW 562



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 125/237 (52%), Gaps = 5/237 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A++LF+ ++      WN +I  + Q+  P +A+  +  ML A  ++P+  T    L 
Sbjct: 140 LDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK-AKPNEVTVLSVLS 198

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC ++ AL   + +H ++  +G +  V V T L+  Y+  G +E AR VFD + ++D+V+
Sbjct: 199 ACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVA 258

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG--IFLHRI 215
           WNS+I  Y    F  EAL+L++ M    +     T + +LS+C H G +  G  IF +++
Sbjct: 259 WNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIF-NKM 317

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGR 271
             E G    +     +V++  + G+++ A+ +   M  + D + W +++    +HG+
Sbjct: 318 KDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGK 374



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 17/148 (11%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ Y  S   SL  A+L+F++I +    AWNS+I  +A      +A+  +  M   
Sbjct: 228 GTALVDMY--SKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRM 285

Query: 83  SLSRPDTFTFTFTLKAC-------ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
            L  P   TF   L AC       E     NK ++ +G   +  +  C+V   NL+ G A
Sbjct: 286 GL-HPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMV---NLL-GRA 340

Query: 136 ANGVIEAARSVFDNMP-ERDLVSWNSII 162
             G +E A  +  NM  E D V W +++
Sbjct: 341 --GHVEQAYELVKNMNIEPDPVLWGTLL 366


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/597 (36%), Positives = 339/597 (56%), Gaps = 55/597 (9%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRA 62
           LK+    + +N      E+ G+++  S A+   ++L Y+  + +Q   P   A NS+IRA
Sbjct: 25  LKQIHTQLVINGLLNNRELLGQFVA-SIAVRNPTNLLYSNQILDQCAKPTLFALNSMIRA 83

Query: 63  FAQSLSPLQAIFYYNHMLMAS-LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
           +++SL+P ++  +YN +L ++ +  PD +TF F ++ C +  A      +HG +I+ G+E
Sbjct: 84  YSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ-SACEAGPAVHGALIKHGFE 142

Query: 122 --------------------RC-----------VVVSTNLMRGYAANGVIEAARSVFDNM 150
                                C           +V  T ++   A  G I  AR++FD+M
Sbjct: 143 YDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSM 202

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           P+RD VSWN++I+ Y Q     EAL L++ M+ + V ++  +++ ++++C H+GAL+ G 
Sbjct: 203 PQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGK 262

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
           + H    +     +V +G ALVDMY KCGN+D A  VF  M +++V +W++ I G  ++G
Sbjct: 263 WAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNG 322

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
            G + +  F  M   G  P+ ITF+ +L GCS  G V+EG  +F  M   + ++P ++HY
Sbjct: 323 YGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHY 382

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
           GC+VDLYGRAG+LE+AL  INT  P  P    W  LL +C++++N+E+GE A + L+++E
Sbjct: 383 GCMVDLYGRAGRLEEALNFINT-MPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVE 441

Query: 389 AASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSH 448
             + G YV L+ IYA T + + V+  R+ +K+ GI   PG S +E+  +VH+F   DKSH
Sbjct: 442 GKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSH 501

Query: 449 PDADMIYRKLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLA 506
           P  D+I     EI  R K  GY  + +  L  +     ED L K    HSEK+AIAFGL 
Sbjct: 502 PSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCK----HSEKMAIAFGLF 557

Query: 507 TTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +  +G  +RIVKNLR            S  + R++IVRDR R+HHF+DG CSC D+W
Sbjct: 558 SLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/530 (37%), Positives = 317/530 (59%), Gaps = 17/530 (3%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           +S++YA  +F  I +P T  +N++IR +   +S  +A+ +YN M M   + PD FT+   
Sbjct: 80  NSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEM-MQRGNEPDNFTYPCL 138

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LKAC R+K++ + +++HG V + G E  V V  +L+  Y   G +E + +VF+ +  +  
Sbjct: 139 LKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTA 198

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            SW+S++S         E L L+  M  E ++  +   +V  L +CA+ GALN+G+ +H 
Sbjct: 199 ASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHG 258

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                    ++ V  +LVDMY KCG LD A  +F +M KR+ L++++MI G  +HG G+ 
Sbjct: 259 FLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGES 318

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F +M+  G  PD + ++ +L  CSH GLV+EG   F  M+    ++P  +HYGCLV
Sbjct: 319 ALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLV 378

Query: 335 DLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           DL GRAG LE+ALE I +     + V+WRT L  C++ +N+E+G+IA + L++L + + G
Sbjct: 379 DLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPG 438

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
           DY+L++ +Y+  +  + VARTR  I   G+K TPG+S +E+  + H+FV  D+SHP    
Sbjct: 439 DYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKE 498

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           IY+ L ++  + KF GY+ D  L  +  +  E+  ++    HS+K+AIAFGL  TP G+ 
Sbjct: 499 IYKMLHQMEWQLKFEGYSPD--LTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSI 556

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++I +NLR            S+ Y R+++VRDR R+H F+ G CSC DYW
Sbjct: 557 IKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/524 (37%), Positives = 302/524 (57%), Gaps = 23/524 (4%)

Query: 45   FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
            FN++ +     WNSLI  +AQ   P  AI  +  + +++++ PD  T    + AC  +  
Sbjct: 488  FNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN-PDAGTMVGVVPACALLND 546

Query: 105  LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-ERDLVSWNSIIS 163
            L++   +HG +++ G+E    V   L+  YA  G + +A  +F+     +D V+WN II+
Sbjct: 547  LDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIA 606

Query: 164  CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
             Y Q     EA+  + +MR E+   +  T V +L + A++ A   G+  H    +MGF+ 
Sbjct: 607  AYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLS 666

Query: 224  SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            +  VGN+L+DMYAKCG L  +  +F+ M  +D +SWN+M+ GY VHG GD AI+ F  M 
Sbjct: 667  NTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQ 726

Query: 284  MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             +    DS++F+ +L  C H GLVEEG + FH M  +Y++KP ++HY C+VDL GRAG  
Sbjct: 727  ESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLF 786

Query: 344  EKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
            ++ L  I    P +P   +W  LLGSC++H NV++GE+A+ +LV+LE  +   +V+L++I
Sbjct: 787  DETLGFIKV-MPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSI 845

Query: 402  YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
            YA +       + R  +   G+K TPG SW+E+ N+VH F V DKSHP  + ++     +
Sbjct: 846  YAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTL 905

Query: 462  MHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
            + + + IGY  D S V   V     E FL      HSE+LAI F L  TP G++++IVKN
Sbjct: 906  LEKMEKIGYVPDRSCVLQNVEEEDKEMFLYS----HSERLAITFALLNTPPGSTIQIVKN 961

Query: 520  LRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            LR  A             +R +IVRD  R+HHF DG+CSC DYW
Sbjct: 962  LRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 180/358 (50%), Gaps = 13/358 (3%)

Query: 21  IHGEWLLNSYAISVSSSL----------SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPL 70
           IHG      ++ +VS+ L            A+ +F+Q+ +    +W +++  +A +   +
Sbjct: 252 IHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFV 311

Query: 71  QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130
           + +  ++ M + ++        +  L A E +  L K +E+HG  ++   +  ++V+T L
Sbjct: 312 EVLELFDKMKLGNVRINKVSAVSAFLAAAETID-LEKGKEIHGCALQQRIDSDILVATPL 370

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190
           M  YA  G  E A+ +F  +  RDLV+W++II+   Q  +  EAL L++ M+ + +  + 
Sbjct: 371 MVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNR 430

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
            TL+ +L +CA +  L +G  +H    +      +  G ALV MYAKCG   +A   F+R
Sbjct: 431 VTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNR 490

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           M  RD+++WNS+I GY   G    AI  F ++ ++  +PD+ T +G++  C+    +++G
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG 550

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGS 367
               H ++ +   +        L+D+Y + G L  A  + N T    D V W  ++ +
Sbjct: 551 T-CIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 169/342 (49%), Gaps = 6/342 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y++     L  A+ +F+   NP    WNS+IRA+ +S    +A+  Y  M+   L 
Sbjct: 69  LINLYSLFHKCDL--ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGL- 125

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD +TFTF LKAC     L +    HG + R G ER V +   L+  Y+  G ++ AR 
Sbjct: 126 EPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRARE 185

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD MP+RD+V+WN++I+  +Q+    EA+  +  M+   V     +L+ L      +  
Sbjct: 186 VFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSN 245

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           + +   +H       F  S  V N L+D+Y+KCG++D A  VF +M  +D +SW +M+ G
Sbjct: 246 IELCRSIHGYVFRRDF--SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAG 303

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y  +G   E +  F +M +     + ++ +      +    +E+G E  H    +  +  
Sbjct: 304 YAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKE-IHGCALQQRIDS 362

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
            I     L+ +Y + G+ EKA ++       D V W  ++ +
Sbjct: 363 DILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 138/266 (51%), Gaps = 8/266 (3%)

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
           K LN   ++H  +I SG++    + T+L+  Y+     + ARSVFD+ P    + WNS+I
Sbjct: 43  KHLNPLLQIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMI 101

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM--GIFLHRIACEMG 220
             YT++  + EAL++Y  M  + +  D +T   +L +C   GALN+  G++ H      G
Sbjct: 102 RAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC--TGALNLQEGVWFHGEIDRRG 159

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               V++G  LVDMY+K G+L  A  VF +M KRDV++WN+MI G        EA+ FF+
Sbjct: 160 LERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFR 219

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            M + G  P S++ L L  G      +E      H  V R +    + +   L+DLY + 
Sbjct: 220 SMQLVGVEPSSVSLLNLFPGICKLSNIEL-CRSIHGYVFRRDFSSAVSN--GLIDLYSKC 276

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLG 366
           G ++ A  V +     D V W T++ 
Sbjct: 277 GDVDVARRVFDQMVDQDDVSWGTMMA 302


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/532 (37%), Positives = 310/532 (58%), Gaps = 19/532 (3%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           + S++Y + LF  + +P +  +NSLI+A +     L A+F+Y  ML + +  P T+TFT 
Sbjct: 55  AGSIAYTRRLFRSVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIV-PSTYTFTS 113

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            +KAC  +  L     +H  V  SGY     V   L+  YA +     AR VFD MP+R 
Sbjct: 114 VIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRS 173

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +++WNS+IS Y Q     EA++++ +MR      D  T V +LS+C+ +G+L++G +LH 
Sbjct: 174 IIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHE 233

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                G   +V +  +LV+M+++CG++  A  VF  M + +V+SW +MI GYG+HG G E
Sbjct: 234 CIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVE 293

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F +M   G  P+ +T++ +L  C+H GL+ EG   F  M   Y + PG++H+ C+V
Sbjct: 294 AMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMV 353

Query: 335 DLYGRAGKLEKALEVINTSSPSD--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           D++GR G L +A + +   S  +  P +W  +LG+CK+H+N ++G    +NL+  E  + 
Sbjct: 354 DMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENP 413

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
           G YVLL+ +YA     + V   R ++   G+K   G+S I++ N+ + F + DKSHP+ +
Sbjct: 414 GHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETN 473

Query: 453 MIYRKLEEIMHRAKFIGYTK-DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
            IY  L+E+M R K  GY    ES +        ++  +   YHSEKLA+AFGL  T  G
Sbjct: 474 EIYCYLDELMWRCKDAGYAPAPESAMHELEEEEREYALR---YHSEKLAVAFGLMKTCHG 530

Query: 512 TSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +LRIVKNLR            S+  +R++IVRD++R+HHFR+G CSC DYW
Sbjct: 531 VTLRIVKNLRICEDCHSAIKFISVVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 130/267 (48%), Gaps = 1/267 (0%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L + Q+ H  ++ +G  R   + T L+    A G I   R +F ++ + D   +NS+I  
Sbjct: 23  LRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKA 82

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
            +   F L+A+  Y RM    +    +T   ++ +CA +  L +G  +H      G+  +
Sbjct: 83  SSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASN 142

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
            +V  ALV  YAK      A  VF  M +R +++WNSMI GY  +G   EA+  F +M  
Sbjct: 143 SFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRE 202

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
           +G  PDS TF+ +L  CS  G ++ G  + H  +    ++  +     LV+++ R G + 
Sbjct: 203 SGGEPDSATFVSVLSACSQLGSLDLGC-WLHECIVGTGIRMNVVLATSLVNMFSRCGDVG 261

Query: 345 KALEVINTSSPSDPVLWRTLLGSCKIH 371
           +A  V ++ +  + V W  ++    +H
Sbjct: 262 RARAVFDSMNEGNVVSWTAMISGYGMH 288


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 316/573 (55%), Gaps = 27/573 (4%)

Query: 2   GLKKHARYVGLNKAR--QAHEIHGEWLLNSYAISV-------SSSLSYAQLLFNQIQNPQ 52
            LK  +R   L+  R  QA+ +    + + + +S           ++ A+L+F+  +   
Sbjct: 126 ALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESG 185

Query: 53  TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
              WN+++ A+ ++   ++ +  +  ML   ++  D  T    + AC R+      + + 
Sbjct: 186 VVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAF-DEVTLVSVVTACGRIGDAKLGKWVA 244

Query: 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
           G V   G  R   + T LM  YA  G I  AR +FD M  RD+V+W+++IS YTQA    
Sbjct: 245 GHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCR 304

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           EAL L+  M+   V  +  T+V +LS+CA +GAL  G ++H          +  +G ALV
Sbjct: 305 EALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALV 364

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           D YAKCG +D A   F  M  ++  +W ++I G   +GRG EA+  F  M  AG  P  +
Sbjct: 365 DFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDV 424

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TF+G+L  CSH  LVEEG  +F  M   Y +KP ++HYGC+VDL GRAG +++A + I T
Sbjct: 425 TFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRT 484

Query: 353 SSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410
             P +P  V+WR LL SC +HRNV IGE A+K ++ L  + +GDYVLL+ IYA     + 
Sbjct: 485 -MPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKD 543

Query: 411 VARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY 470
            A  RK +K  GI+ TPG S IE+   V +F  +D  HP+   IY+K+EE++ R K  GY
Sbjct: 544 AAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGY 603

Query: 471 TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIA------ 524
             + + V +     E   E S ++HSEKLAIAFGL     G ++R+ KNLR  A      
Sbjct: 604 VPNTADVRLEVEEREK--EVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSAT 661

Query: 525 ------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                 Y R+++VRDR  +HHF+DG CSC DYW
Sbjct: 662 KLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 135/489 (27%), Positives = 233/489 (47%), Gaps = 24/489 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNP--QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS 83
           LL + A S  + L YA  LF     P   T  +N L+RAF  +  P  A+  +  ML A+
Sbjct: 55  LLEAAAAS-PTLLPYAVSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAA 113

Query: 84  LSRP-DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            + P D  T    LK+C R+ AL+  + +  + ++ G      V ++L+  YA+ G + A
Sbjct: 114 SACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAA 173

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR VFD   E  +V WN+I++ Y +    +E +++++ M    V  D  TLV ++++C  
Sbjct: 174 ARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGR 233

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +G   +G ++     E G   +  +  AL+DMYAKCG +  A  +F  M+ RDV++W++M
Sbjct: 234 IGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAM 293

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I GY    +  EA+  F +M +A   P+ +T + +L  C+  G +E G ++ H  V R  
Sbjct: 294 ISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETG-KWVHSYVRRKR 352

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           L         LVD Y + G ++ A+E   +    +   W  L+     +     G  A++
Sbjct: 353 LSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGR---GREALE 409

Query: 383 NLVQLEAA--SAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTTP---GWSWIEI 434
               +  A     D   +  + AC+     EEG      + +  GIK      G     +
Sbjct: 410 LFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLL 469

Query: 435 G-----NQVHKFVVDDKSHPDADMIYRKLEE--IMHRAKFIGYTKDESLVAVSGSSSEDF 487
           G     ++ ++F+      P+A +I+R L     +HR   IG    + +++++ S S D+
Sbjct: 470 GRAGLVDEAYQFIRTMPIEPNA-VIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDY 528

Query: 488 LEKSSAYHS 496
           +  S+ Y S
Sbjct: 529 VLLSNIYAS 537


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/533 (40%), Positives = 312/533 (58%), Gaps = 34/533 (6%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ-AIFYYNHMLMASLSRPDTFTFTFTL 96
           L YA  +F+QI+NP +  WN+LIRA A+S    Q AI  Y+ ML       D  TF F L
Sbjct: 76  LRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVL 135

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           KAC  + AL++ +++H  +++ G++  V ++ +L+  YA    ++ A+ VFD M ER LV
Sbjct: 136 KACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLV 195

Query: 157 SWNSIISCYTQASFHLEALKLYERMR--FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           SWN +I  + +      AL L+  M+  FE    DG+T+  + ++CA +G+L++GI    
Sbjct: 196 SWNVVIDAFVRFGEFDAALNLFGEMQKFFEP---DGYTIQSIANACAGMGSLSLGI---- 248

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                  V  V +  +LVDMY KCG+L+ A  +F RM KRDV SWNSMI+G+  HG    
Sbjct: 249 -------VNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAA 301

Query: 275 AISFFKQMLMA-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           A+ +F  M+      P++ITF+G+L  C+H GLV EG  YF +MV+ Y +KP ++HYGCL
Sbjct: 302 ALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCL 361

Query: 334 VDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGS-CKIHRNVEIGEIAMKNLVQLEAA- 390
           VDL  RAG +++AL+V+ N     D V+WR+LL + CK +  VE+ E   + +++ E   
Sbjct: 362 VDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGV 421

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
            +G YVLL+ +YA       V   RKL+   G+   PG S IEI    H+F   D SHP 
Sbjct: 422 CSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQ 481

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
            + IY  L+ I  R + +GY+ D S   +   +  D  + S   HSE+LAIAFGL  T  
Sbjct: 482 TEEIYSALDVIEERVERVGYSPDSSQAPMVDETI-DGKQYSLRLHSERLAIAFGLLKTKP 540

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G  +RI KNLR            S  ++R++IVRDR+R+HHF+DG CSC DYW
Sbjct: 541 GMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 593



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 28/164 (17%)

Query: 21  IHGEWLLNSYAISV---SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYN 77
           I  + LLN+  + +     SL  A  LF+++      +WNS+I  F+       A+ Y+ 
Sbjct: 248 IVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFG 307

Query: 78  HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN-------- 129
            M+      P+  TF   L AC            HG ++  G     V+ T         
Sbjct: 308 CMVRTEKLMPNAITFVGVLSACN-----------HGGLVSEGRRYFDVMVTEYKIKPELE 356

Query: 130 ----LMRGYAANGVIEAARSVFDNMPER-DLVSWNSII-SCYTQ 167
               L+   A  G+I+ A  V  NMP R DLV W S++ +C  Q
Sbjct: 357 HYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQ 400


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/558 (37%), Positives = 310/558 (55%), Gaps = 26/558 (4%)

Query: 7   ARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS 66
           A Y+  ++ R A       LL+ YA     SL  A+ +F +I      AWN++I A+ Q 
Sbjct: 436 AGYITDDRVRTA-------LLSMYA--KCGSLMDARNVFERISKQNVVAWNAMITAYVQH 486

Query: 67  LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV 126
                A+  +  +L   + +PD+ TFT  L  C+   AL   + +   +IR+G+E  + +
Sbjct: 487 EKYDNAVATFQALLKEGI-KPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHI 545

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
              L+  +   G + +A ++F++MPERDLVSWN+II+ + Q   +  A   ++ M+   V
Sbjct: 546 RNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGV 605

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T   LL++CA   AL  G  LH +  E      V VG  L+ MY KCG++D A  
Sbjct: 606 KPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHL 665

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF  + K++V SW SMI GY  HGRG EA+  F QM   G  PD ITF+G L  C+H GL
Sbjct: 666 VFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGL 725

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLL 365
           ++EG+ +F  M   +N++P ++HYGC+VDL+GRAG L +A+E IN      D  LW  LL
Sbjct: 726 IKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALL 784

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
           G+C++H +VE+ E   +  ++L+    G YV+L+ IYA     + V + RK++   G+  
Sbjct: 785 GACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVK 844

Query: 426 TPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSE 485
            PG SWIE+  +VH F  DDK+HP  + I+ +L  +    K +GY  D   V      SE
Sbjct: 845 KPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSE 904

Query: 486 DFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRD 533
              E +  +HSE+LAIA+GL  TP  T + I KNLR            S    R +I RD
Sbjct: 905 K--EHALCHHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARD 962

Query: 534 RVRYHHFRDGLCSCGDYW 551
             R+HHF+DG+CSCGD+W
Sbjct: 963 SNRFHHFKDGVCSCGDFW 980



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 172/325 (52%), Gaps = 2/325 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+++ +    +WN L+  + Q     +A   +  M+   + +PD +TF + L AC 
Sbjct: 158 AKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGV-KPDKYTFVYMLNACA 216

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             K ++K  EL   ++ +G++  + V T L+  +   G ++ A  VF+N+P RDL++W S
Sbjct: 217 DAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTS 276

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+   +     +A  L++ M  E V  D    V LL +C H  AL  G  +H    E+G
Sbjct: 277 MITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVG 336

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               +YVG AL+ MY KCG+++ A  VF+ ++ R+V+SW +MI G+  HGR +EA  FF 
Sbjct: 337 LDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFN 396

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M+ +G  P+ +TF+ +L  CS    +++G +  H  + +       +    L+ +Y + 
Sbjct: 397 KMIESGIEPNRVTFMSILGACSRPSALKQGRQ-IHDRIIKAGYITDDRVRTALLSMYAKC 455

Query: 341 GKLEKALEVINTSSPSDPVLWRTLL 365
           G L  A  V    S  + V W  ++
Sbjct: 456 GSLMDARNVFERISKQNVVAWNAMI 480



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 192/367 (52%), Gaps = 12/367 (3%)

Query: 2   GLKKHARY--VGLNKARQAHEIH-GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNS 58
           G + HAR   VGL+      EI+ G  LL+ Y  +   S+  A  +FN ++     +W +
Sbjct: 325 GKRVHARMKEVGLDT-----EIYVGTALLSMY--TKCGSMEDALEVFNLVKGRNVVSWTA 377

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           +I  FAQ     +A  ++N M+ + +  P+  TF   L AC R  AL + +++H  +I++
Sbjct: 378 MIAGFAQHGRMEEAFLFFNKMIESGI-EPNRVTFMSILGACSRPSALKQGRQIHDRIIKA 436

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           GY     V T L+  YA  G +  AR+VF+ + ++++V+WN++I+ Y Q   +  A+  +
Sbjct: 437 GYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATF 496

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
           + +  E +  D  T   +L+ C    AL +G ++  +    GF   +++ NALV M+  C
Sbjct: 497 QALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNC 556

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G+L SA  +F+ M +RD++SWN++I G+  HG    A  +FK M  +G  PD ITF GLL
Sbjct: 557 GDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLL 616

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C+    + EG    H +++   L   +     L+ +Y + G ++ A  V +     + 
Sbjct: 617 NACASPEALTEG-RRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNV 675

Query: 359 VLWRTLL 365
             W +++
Sbjct: 676 YSWTSMI 682



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 187/382 (48%), Gaps = 14/382 (3%)

Query: 30  YAISVSSSLSYAQ-LLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD 88
           Y  S S S S  Q   F  I+N  TQ  N+ +   +++    +A+     +++ S+  P 
Sbjct: 47  YTTSFSGSYSKGQGNEFVDIKN--TQRANAFLNRLSKAGQLSEAM-----LVLLSVDSPH 99

Query: 89  TF----TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
                 T++  L+ C + K L   + +H  +  S  +  + +   L+  YA  G   +A+
Sbjct: 100 IQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAK 159

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            +FD MP++D+ SWN ++  Y Q   + EA +L+E+M  + V  D +T V +L++CA   
Sbjct: 160 QIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAK 219

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
            ++ G  L  +    G+   ++VG AL++M+ KCG +D A  VF+ + +RD+++W SMI 
Sbjct: 220 NVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMIT 279

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           G   H +  +A + F+ M   G  PD + F+ LL  C+H   +E+G +  H  +    L 
Sbjct: 280 GLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQG-KRVHARMKEVGLD 338

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
             I     L+ +Y + G +E ALEV N     + V W  ++     H  +E   +    +
Sbjct: 339 TEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKM 398

Query: 385 VQLEAASAGDYVLLATIYACTK 406
           ++           ++ + AC++
Sbjct: 399 IE-SGIEPNRVTFMSILGACSR 419



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 156/323 (48%), Gaps = 2/323 (0%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +FN +       W S+I   A+     QA   +  M    + +PD   F   LKAC   +
Sbjct: 262 VFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGV-QPDKVAFVSLLKACNHPE 320

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           AL + + +H  +   G +  + V T L+  Y   G +E A  VF+ +  R++VSW ++I+
Sbjct: 321 ALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIA 380

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            + Q     EA   + +M    +  +  T + +L +C+   AL  G  +H    + G++ 
Sbjct: 381 GFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYIT 440

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
              V  AL+ MYAKCG+L  A  VF R+ K++V++WN+MI  Y  H + D A++ F+ +L
Sbjct: 441 DDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALL 500

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  PDS TF  +L  C     +E G ++   ++ R   +  +     LV ++   G L
Sbjct: 501 KEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNCGDL 559

Query: 344 EKALEVINTSSPSDPVLWRTLLG 366
             A+ + N     D V W T++ 
Sbjct: 560 MSAMNLFNDMPERDLVSWNTIIA 582


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/540 (36%), Positives = 310/540 (57%), Gaps = 23/540 (4%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP----- 87
           S    L  A+ +F++I      +W S+IR +  + + L A+  +  +L+           
Sbjct: 122 STCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFL 181

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA--ANGVIEAARS 145
           D+      + AC RV A    + +H FVI+ G++R V V   L+  YA    G +  AR 
Sbjct: 182 DSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARK 241

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV-GLDGFTLVCLLSSCAHVG 204
           +FD + ++D VS+NSI+S Y Q+    EA  ++ R+  E V   +  TL  +L + +H G
Sbjct: 242 IFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSG 301

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL +G  +H     MG  + V VG +++DMY KCG +++A   F RM+ ++V SW +MI 
Sbjct: 302 ALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIA 361

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GYG+HG   +A+  F  M+ +G  P+ ITF+ +L  CSH GL + G  +F+ M  R+ ++
Sbjct: 362 GYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVE 421

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
           PG++HYGC+VDL GRAG L+KA ++I       D ++W +LL +C+IH+NVE+ EI++  
Sbjct: 422 PGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVAR 481

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           L +L+ ++ G Y+LL+ IYA +   + V R R  +K+ G+   PG+S +E+  +VH F++
Sbjct: 482 LFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLI 541

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
            D+ HP  + IY  L E+  +    GY  + S  +V     E+  E +   HSEKLAIAF
Sbjct: 542 GDEEHPQREKIYEFLAELNRKLLEAGYVSNTS--SVCHDVDEEEKEMTLRVHSEKLAIAF 599

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G+  T  G+++ +VKNLR            S    R+ +VRD  R+HHF+DG CSCGDYW
Sbjct: 600 GIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 165/338 (48%), Gaps = 12/338 (3%)

Query: 44  LFNQ-IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
           LFN+ +      +WNS+I   A+S    +A+  ++ M   SL  P   +F   +KAC  +
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSL-YPTRSSFPCAIKACSSL 89

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
             +   ++ H      GY+  + VS+ L+  Y+  G +E AR VFD +P+R++VSW S+I
Sbjct: 90  LDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149

Query: 163 SCYTQASFHLEALKLYERMRFED------VGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
             Y      L+A+ L++ +  E+      + LD   +V ++S+C+ V A  +   +H   
Sbjct: 150 RGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFV 209

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFC--VFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            + GF   V VGN L+D YAK G    A    +F ++  +D +S+NS++  Y   G  +E
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269

Query: 275 AISFFKQMLMAGFHP-DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           A   F++++       + IT   +L   SH G +  G +  H  V R  L+  +     +
Sbjct: 270 AFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIG-KCIHDQVIRMGLEDDVIVGTSI 328

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +D+Y + G++E A    +     +   W  ++    +H
Sbjct: 329 IDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMH 366



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 124/249 (49%), Gaps = 2/249 (0%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL++YA      ++ A+ +F+QI +    ++NS++  +AQS    +A   +  ++  
Sbjct: 221 GNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKE 280

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +   +  T +  L A     AL   + +H  VIR G E  V+V T+++  Y   G +E 
Sbjct: 281 KVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVET 340

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR  FD M  +++ SW ++I+ Y       +AL+L+  M    V  +  T V +L++C+H
Sbjct: 341 ARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSH 400

Query: 203 VGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWN 260
            G  ++G  + + +    G    +     +VD+  + G L  A+ +  +M+ + D + W+
Sbjct: 401 AGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWS 460

Query: 261 SMIVGYGVH 269
           S++    +H
Sbjct: 461 SLLAACRIH 469


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/545 (38%), Positives = 317/545 (58%), Gaps = 21/545 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  ++N Y+ S+   +S A+ +F+ ++N    +WNS+I  F  +   L+A   +  M + 
Sbjct: 231 GNSMVNMYSKSLM--VSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLE 288

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +    T  F   +K C  +K ++  ++LH  VI++G +  + + T LM  Y+    I+ 
Sbjct: 289 GVKLTQTI-FATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDD 347

Query: 143 ARSVFDNM-PERDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSC 200
           A  +F  M   +++VSW +IIS Y Q      A+ L+ +MR E+ V  + FT   +L++C
Sbjct: 348 AFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNAC 407

Query: 201 A-HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           A    ++  G   H  + + GF  ++ V +ALV MYAK GN++SA  VF R   RD++SW
Sbjct: 408 AAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSW 467

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           NSMI GY  HG G +++  F++M       D ITF+G++  C+H GLV EG  YF +MV 
Sbjct: 468 NSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVK 527

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGE 378
            Y++ P ++HY C+VDLY RAG LEKA+++IN    P+   +WRTLL +C++H NV++GE
Sbjct: 528 DYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGE 587

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
           +A + L+ L+   +  YVLL+ IYA   + +  A+ RKL+    +K   G+SWIE+ N+ 
Sbjct: 588 LAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKT 647

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
             F+  D SHP +D IY KLEE+  R K  GY  D   V       E+  E   + HSE+
Sbjct: 648 FSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVL--HDVEEEHKEVILSQHSER 705

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LAIAFGL  TP GT ++IVKNLR            S    RD++VRD  R+HHF+ G CS
Sbjct: 706 LAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCS 765

Query: 547 CGDYW 551
           CGDYW
Sbjct: 766 CGDYW 770



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 184/377 (48%), Gaps = 12/377 (3%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           + S+   + +F++++     +W SL+  + Q+    QA+  ++ M +  + +P+ FTF  
Sbjct: 140 TESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGI-KPNPFTFAA 198

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L       A+ K  ++H  VI+SG +  + V  +++  Y+ + ++  A++VFD+M  R+
Sbjct: 199 VLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRN 258

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            VSWNS+I+ +      LEA +L+ RMR E V L       ++  CA++  ++    LH 
Sbjct: 259 AVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHC 318

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-RDVLSWNSMIVGYGVHGRGD 273
              + G    + +  AL+  Y+KC  +D AF +F  M   ++V+SW ++I GY  +GR D
Sbjct: 319 QVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTD 378

Query: 274 EAISFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            A++ F QM    G  P+  TF  +L  C+      E  + FH    +      +     
Sbjct: 379 RAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSA 438

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH----RNVEIGEIAMKNLVQLE 388
           LV +Y + G +E A EV       D V W +++     H    ++++I E      ++L+
Sbjct: 439 LVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELD 498

Query: 389 AASAGDYVLLATIYACT 405
             +      +  I ACT
Sbjct: 499 GIT-----FIGVISACT 510



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 134/264 (50%), Gaps = 1/264 (0%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           ++Q LF++         N L+  F+++    +A+  +   L  S S  D  + +  LK C
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLG-LRRSGSPTDGSSLSCVLKVC 102

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
             +      +++H   I+ G+   V V T+L+  Y     +E    VFD M  +++VSW 
Sbjct: 103 GCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           S+++ Y Q   + +ALKL+ +M+ E +  + FT   +L   A  GA+  G+ +H +  + 
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS 222

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G   +++VGN++V+MY+K   +  A  VF  M  R+ +SWNSMI G+  +G   EA   F
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 280 KQMLMAGFHPDSITFLGLLCGCSH 303
            +M + G       F  ++  C++
Sbjct: 283 YRMRLEGVKLTQTIFATVIKLCAN 306



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 119/224 (53%), Gaps = 1/224 (0%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           ++ +FD  P++ L   N ++  +++   + EAL L+  +R      DG +L C+L  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +    +G  +H    + GFVE V VG +LVDMY K  +++    VF  MR ++V+SW S+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           + GY  +G  ++A+  F QM + G  P+  TF  +L G +  G VE+GV+  H MV +  
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           L   I     +V++Y ++  +  A  V ++    + V W +++ 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIA 267


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/541 (37%), Positives = 317/541 (58%), Gaps = 19/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+ + A++   S+ YA  +F QI  P +  +N++IR     +   +A+  Y  M+   + 
Sbjct: 36  LVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLEEALLLYVDMIERGV- 94

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD FT+ F LKAC  +  +++  ++HG V + G E  V+V  +L+  Y   G I+ A  
Sbjct: 95  EPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACD 154

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVG 204
           VF+ M E+ + SW++II  +       E L L  +M  E    ++  TLV +LS+C H+G
Sbjct: 155 VFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLG 214

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           + ++G  +H I        +V V  +L+DMY K G L+    VF  M +++  S+  MI 
Sbjct: 215 SPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMIS 274

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           G  +HGRG EA+  F +M+  G  PD + ++G+   CSH GLVEEG++ F  M   + ++
Sbjct: 275 GLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIE 334

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSS--PSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           P ++HYGC+VDL GR G L++A E+I + S  P+D V+WR+LL +CK+H N+EIG+IA +
Sbjct: 335 PTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPND-VIWRSLLSACKVHHNLEIGKIAAE 393

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
           NL  L   ++GDY++LA +YA  +  + VA+ R  +    +  TPG+S IE   +V+KFV
Sbjct: 394 NLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKRKVYKFV 453

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             DKS P  ++IY  + ++  + KF GY  D S V +     E   ++   +HS+KLAIA
Sbjct: 454 SQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLDVDDEEK--KERLKFHSQKLAIA 511

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FGL  T +G+ LRI +NLR            S+ Y R++ VRDR+R+HHF++G CSC DY
Sbjct: 512 FGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREITVRDRLRFHHFKNGSCSCKDY 571

Query: 551 W 551
           W
Sbjct: 572 W 572



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 22/152 (14%)

Query: 237 KCGNLDSAFC---------------------VFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           KCG     FC                     +F+++ +     +N+MI G     + +EA
Sbjct: 23  KCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLEEA 82

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  +  M+  G  PD  T+  +L  CS  G+V+EG++  H  V +  L+  +     L++
Sbjct: 83  LLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQ-VHGHVFKMGLEGDVIVQNSLIN 141

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
           +YG+ G+++ A +V N         W  ++G+
Sbjct: 142 MYGKCGEIKNACDVFNGMDEKSVASWSAIIGA 173


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/530 (38%), Positives = 301/530 (56%), Gaps = 20/530 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS--RPDTFTFTF 94
           S++ A+ +F+ + N    +W  +I A+AQS +  +A   Y  ML       +P+  T+  
Sbjct: 179 SINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEA---YRLMLQMEQEGFKPNAITYVS 235

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L AC    AL   + +H   + +G E  V V T L++ YA +G I+ AR VFD M  RD
Sbjct: 236 ILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRD 295

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +VSWN +I  + +     EA  L+ +M+ E    D    + +L++CA  GAL     +HR
Sbjct: 296 VVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHR 355

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            A + G    V VG ALV MY+K G++D A  VF RM+ R+V+SWN+MI G   HG G +
Sbjct: 356 HALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQD 415

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F++M   G  PD +TF+ +L  CSH GLV+EG   +  M   Y ++P + H  C+V
Sbjct: 416 ALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMV 475

Query: 335 DLYGRAGKL-EKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           DL GRAG+L E  L + N +   D   W  LLGSC+ + NVE+GE+  K  ++L+  +A 
Sbjct: 476 DLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAA 535

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            YVLL+ IYA     + V+  R +++  GI+  PG SWIE+ N++H F+V D SHP+   
Sbjct: 536 TYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKE 595

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           I    ++++ + K  GY  D  LV  + +  +  L+  S  HSEKLAI +GL  TP G  
Sbjct: 596 INESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICS--HSEKLAIVYGLMHTPPGNP 653

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R+ KNLR            S    R++IVRD  R+HHF+DG+CSCGDYW
Sbjct: 654 IRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 183/370 (49%), Gaps = 7/370 (1%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F+ +      +WN++I  + +      A+  +  M    + +P+  T+   LK
Sbjct: 79  LQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGV-QPNAGTYMIILK 137

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  + AL   +E+H  +   G E  V V T L+R Y   G I  AR +FDN+   D++S
Sbjct: 138 ACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIIS 197

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W  +I  Y Q+    EA +L  +M  E    +  T V +L++CA  GAL     +HR A 
Sbjct: 198 WTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHAL 257

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G    V VG ALV MYAK G++D A  VF RM+ RDV+SWN MI  +  HGRG EA  
Sbjct: 258 DAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYD 317

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM   G  PD+I FL +L  C+  G + E V+  H       L+  ++    LV +Y
Sbjct: 318 LFLQMQTEGCKPDAIMFLSILNACASAGAL-EWVKKIHRHALDSGLEVDVRVGTALVHMY 376

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA--ASAGDY 395
            ++G ++ A  V +     + V W  ++     H    +G+ A++   ++ A        
Sbjct: 377 SKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQH---GLGQDALEVFRRMTAHGVKPDRV 433

Query: 396 VLLATIYACT 405
             +A + AC+
Sbjct: 434 TFVAVLSACS 443



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 165/331 (49%), Gaps = 7/331 (2%)

Query: 79  MLMASLSR---PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
           +LM  L R    D+F +   LK C + K L   +++H  +I+S  E+   V  NL+  Y 
Sbjct: 15  VLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYI 74

Query: 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
             G ++ AR VFD + ++   SWN++I+ Y +     +A++L+  M  E V  +  T + 
Sbjct: 75  ECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMI 134

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L +CA + AL  G  +H      G    V VG AL+ MY KCG+++ A  +F  +   D
Sbjct: 135 ILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHD 194

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           ++SW  MI  Y   G G EA     QM   GF P++IT++ +L  C+ +G + + V+  H
Sbjct: 195 IISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGAL-KWVKRVH 253

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNV 374
                  L+  ++    LV +Y ++G ++ A  V +     D V W  ++G+   H R  
Sbjct: 254 RHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGH 313

Query: 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           E  ++ ++  +Q E       + L+ + AC 
Sbjct: 314 EAYDLFLQ--MQTEGCKPDAIMFLSILNACA 342



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 147/325 (45%), Gaps = 44/325 (13%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+  YA   S S+  A+++F++++     +WN +I AFA+     +A   +  M   
Sbjct: 268 GTALVQMYA--KSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTE 325

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
              +PD   F   L AC    AL   +++H   + SG E  V V T L+  Y+ +G I+ 
Sbjct: 326 G-CKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDD 384

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR VFD M  R++VSWN++IS   Q     +AL+++ RM    V  D  T V +LS+C+H
Sbjct: 385 ARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSH 444

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
            G ++ G              S Y+  A+  +Y                 + DV   N M
Sbjct: 445 AGLVDEG-------------RSQYL--AMTQVYGI---------------EPDVSHCNCM 474

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           +   G  GR  EA  F   M      PD  T+  LL  C   G VE G      +V++  
Sbjct: 475 VDLLGRAGRLMEAKLFIDNM---AVDPDEATWGALLGSCRTYGNVELG-----ELVAKER 526

Query: 323 LKPGIKH---YGCLVDLYGRAGKLE 344
           LK   K+   Y  L ++Y  AGK +
Sbjct: 527 LKLDPKNAATYVLLSNIYAEAGKWD 551


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/444 (43%), Positives = 278/444 (62%), Gaps = 15/444 (3%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           ER +V    ++ GYA NG ++ AR VF+ M +RD  SW+S++S YT+     +AL+L+  
Sbjct: 134 ERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWRE 193

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           MR   V  D  T+V +LS+C+ +GAL +G  +H+     G    V +G AL+DMYAKCG+
Sbjct: 194 MRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGD 253

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           ++++  VF  M  +DVL+W+SMI+G   HG G +A+S F +ML  G  P+ +TF+G+L  
Sbjct: 254 IENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLIS 313

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPV 359
           C+H GLV +G +YF  M   + + P ++HYGC+VDL GR+G +E+A ++I +     D V
Sbjct: 314 CTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAV 373

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
           +WR LLG+C+I++NVE+ E AM  L  L+  + G YVLL+ IYA     EGVA  R+ ++
Sbjct: 374 IWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLR 433

Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
              I+  PG S IE  N +H+F+  D+SHP +  IY+ L E+M R +  GY     LV  
Sbjct: 434 RERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVL- 492

Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
                E   E++ A HSEKLA+AFGL TTP G++LRI KNLR            ++ Y R
Sbjct: 493 -QDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLYER 551

Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
            LI+RDR R+HHF +G CSC DYW
Sbjct: 552 KLIIRDRNRFHHFSEGRCSCKDYW 575



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 175/427 (40%), Gaps = 55/427 (12%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           W    +  +V+  +  A+ +FN + +    +W+S++ A+ +      A+  +  M  A +
Sbjct: 140 WNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACV 199

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
           + PD  T    L AC  + AL    E+H FV  +G E  V + T L+  YA  G IE + 
Sbjct: 200 N-PDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSV 258

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VF +MP +D+++W+S+I       F  +AL L+ RM  E +  +  T + +L SC H+G
Sbjct: 259 RVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLG 318

Query: 205 ALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
            ++ G  +   ++   G    V     +VD+  + G++                      
Sbjct: 319 LVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHI---------------------- 356

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
                    +EA    + M    F PD++ +  LL  C     VE   E    M     L
Sbjct: 357 ---------EEAKQLIRDM---PFEPDAVIWRALLGACRIYKNVEVAEE---AMAKLRVL 401

Query: 324 KPGIK-HYGCLVDLYGRAGKLEKALEV--------INTSSPSDPVLWRTLL-----GSCK 369
            P    HY  L ++Y +A   E   E+        I        + W+  +     G   
Sbjct: 402 DPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRS 461

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDY--VLLATIYACTKDEEGVARTRKLIKSNGIKTTP 427
             R+ EI ++  + + +L  A       ++L  I   +K+      + KL  + G+ TTP
Sbjct: 462 HPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTP 521

Query: 428 GWSWIEI 434
             S + I
Sbjct: 522 AGSTLRI 528



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 42/229 (18%)

Query: 168 ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227
           AS H  ALK            D F    L+ + A  G  +    L R A +      V++
Sbjct: 59  ASLHARALK------SGFAAADLFVRTALVEAYAKAGRAD----LARAAFDEAPRRDVFL 108

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG----------------- 270
            N ++  Y   G +  A  VF  MR+RD++SWN+MI GY V+G                 
Sbjct: 109 CNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDA 168

Query: 271 --------------RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
                         R  +A+  +++M  A  +PD  T + +L  CS  G +  G E  H 
Sbjct: 169 FSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAE-VHQ 227

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            V    ++  +K    L+D+Y + G +E ++ V ++    D + W +++
Sbjct: 228 FVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMI 276


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/565 (35%), Positives = 313/565 (55%), Gaps = 51/565 (9%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S     A   F ++ +    +WNS+I  ++Q    L+A+  ++ ML     +PD FT   
Sbjct: 221 SGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLAS 280

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERC------------------------------- 123
            L AC  ++ LN  +++H +++R+  E                                 
Sbjct: 281 ILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSN 340

Query: 124 --VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
             ++  T+L+ GY   G ++ AR +F+ + +RD+V+W ++I  Y Q     +AL+L+  M
Sbjct: 341 LNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLM 400

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
             E    + +TL  +LS  + +  L  G  +H  A + G   +  V NAL+ MYAK GN+
Sbjct: 401 VNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNI 460

Query: 242 DSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           + A  VF     K++++SW SMI+    HG G EAI+ F++ML  G  PD IT++G+L  
Sbjct: 461 NVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSA 520

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP-- 358
           C+H GLVE+G +Y++MM   + ++P + HY C++DLYGRAG L++A   I  S P +P  
Sbjct: 521 CTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIE-SMPIEPDN 579

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
           + W +LL SCKIH+N ++ ++A + L+ ++  ++G Y+ LA +Y+     E  A+TRKL+
Sbjct: 580 IAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLM 639

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
           K  G++   G SWI I N+VH F V+D  HP  D IY+ + EI    K +G+  D    +
Sbjct: 640 KDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTE--S 697

Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
           V     E+  E+   YHSEKLAIAFGL  TP+ T+LRI+KNLR            S    
Sbjct: 698 VLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVG 757

Query: 527 RDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++IVRD  R+HHF+DG CSC DYW
Sbjct: 758 REIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 191/447 (42%), Gaps = 99/447 (22%)

Query: 23  GEWLLNSYAI--SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS-------------- 66
           G +L+N+     + + SL +A  +F+++    T +WN+LI  +A+               
Sbjct: 44  GVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMP 103

Query: 67  ----LSPLQAIFYYNHM------------LMASLSRPDTFTFTFTLKACERVKALNKCQE 110
               +S    I  YN              +++    P  FT +  L +C   + L+  ++
Sbjct: 104 DCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRK 163

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC------ 164
           +H FV++ G   CV V+T+L+  YA  G    A+ VFD M  +++ +WN++IS       
Sbjct: 164 IHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQ 223

Query: 165 -------------------------YTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLS 198
                                    Y+Q  ++LEAL ++ +M  E  +  D FTL  +LS
Sbjct: 224 FELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILS 283

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC-------------------- 238
           +CA++  LN+G  +H          S  VGNAL+ MYAK                     
Sbjct: 284 ACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNI 343

Query: 239 -------------GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
                        GN+  A  +F+++R RDV++W +MIVGY  +G  ++A+  F+ M+  
Sbjct: 344 IAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNE 403

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
           G  P+S T   +L   S   ++E G +  H    +            L+ +Y + G +  
Sbjct: 404 GPEPNSYTLAAMLSVSSSLTILEHGKQ-IHASAIKAGESSTPSVTNALIAMYAKTGNINV 462

Query: 346 ALEVIN-TSSPSDPVLWRTLLGSCKIH 371
           A  V +  +   + V W +++ +   H
Sbjct: 463 AKRVFDLPNGKKEIVSWTSMIMALAQH 489



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 135/329 (41%), Gaps = 64/329 (19%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           F   L+   R+K     + +H  +I+ G    V +  NLM  YA  G +  A  VFD MP
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 152 ERDLVSWNSIISCYT-QASFHLEALKLYE------------------------------R 180
            +   SWN++IS Y  Q +F +    LYE                              +
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M  E V    FT+  +LSSCA    L++G  +H    ++G    V V  +L++MYAKCG+
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 241 LDSAFCVFSRMR-------------------------------KRDVLSWNSMIVGYGVH 269
              A  VF RM                                 RD++SWNSMI GY   
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 270 GRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           G   EA+  F +ML      PD+ T   +L  C++   +  G +  H  + R   +    
Sbjct: 253 GYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ-IHAYILRAETETSGA 311

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSD 357
               L+ +Y ++G +E A  ++  +  S+
Sbjct: 312 VGNALISMYAKSGGVEIARLIVEHNRTSN 340


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/533 (37%), Positives = 315/533 (59%), Gaps = 26/533 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L Y++ LF+ + NP    +N+++RA++ S SPL+ ++ Y  M    + R D  + +F +K
Sbjct: 77  LGYSRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGV-RADPLSSSFAVK 135

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +C ++ +L    ++H  +  +G++   ++ T++M  Y+  G  E A  +FD +P++D+V+
Sbjct: 136 SCIKLLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVA 195

Query: 158 WNSIISCYTQASFHLEALKLYERMRFED--VGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           WN +ISC T+     +AL L+E M+        D  T + LL +CA + AL  G  +H  
Sbjct: 196 WNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGY 255

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             + G+     + N+L+ MY++CG +D A+ VF +M +++V+SW++MI G  ++G G EA
Sbjct: 256 IQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREA 315

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           I  F +M   G  P   TF  +L  CSH GLV+EG+ +F  M   + + P + HYGC+VD
Sbjct: 316 IEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVD 375

Query: 336 LYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           L GRAG L++A E+I +     D  +WRTLLG+C+IH +  +GE  +++L++L++  AGD
Sbjct: 376 LLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGD 435

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL  IY+   + + V   RKL+K  GI TTP  + IE+   VH+F VDD SHP  D I
Sbjct: 436 YVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKI 495

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY----HSEKLAIAFGLATTPD 510
           Y++L+EI  + K  GY  + S      S       K   Y    HSEKLAIAFG+  TP 
Sbjct: 496 YKQLDEINKQLKIAGYEAEMS------SELHRLEPKDKGYALSNHSEKLAIAFGVLATPP 549

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G ++RI  N+R            S  Y+R ++VRDR R+HHF++G CSC D+W
Sbjct: 550 GRTIRIANNIRTCMDCHNFAKYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/534 (38%), Positives = 318/534 (59%), Gaps = 29/534 (5%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF +I      +WN++I  +AQS    +A+ ++  M  A+++ P+  T    L 
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVA-PNESTMVTVLS 272

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC +  +L     +  ++   G    + +   L+  Y+  G ++ AR +F+ + E+D++S
Sbjct: 273 ACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIIS 332

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN +I  Y+  + + EAL L+ +M+  +V  +  T V +L +CA++GAL++G ++H    
Sbjct: 333 WNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIH---- 388

Query: 218 EMGFVESVYVG-------NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
              +++  ++G        +L+DMYAKCGN+++A  VF+ M+ + + SWN+MI G  +HG
Sbjct: 389 --AYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHG 446

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
             + A+  F+QM   GF PD ITF+G+L  CSH GLVE G + F  MV  Y++ P ++HY
Sbjct: 447 HANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHY 506

Query: 331 GCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
           GC++DL GRAG  ++A  ++ N     D  +W +LLG+C++H NVE+GE A K+L +LE 
Sbjct: 507 GCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEP 566

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
            + G YVLL+ IYA     + VAR R  +   G+K  PG S IE+ + VH+F+V DK H 
Sbjct: 567 ENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHE 626

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
            +  IY+ L+EI    +  G+  D S V       E++ E S ++HSEKLAIAFGL +T 
Sbjct: 627 QSQDIYKMLDEIDQLLEKAGHVPDTSEVLY--DMDEEWKEGSLSHHSEKLAIAFGLISTK 684

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             T++RIVKNLR            S  ++R++I RDR R+HHF+DG CSC DYW
Sbjct: 685 PETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 213/412 (51%), Gaps = 35/412 (8%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+   AIS   +LSYA LLF  I+ P    WN++IR  + S SP+ AI +Y  ML+  + 
Sbjct: 70  LIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGV- 128

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE------------------------ 121
            P+++TF F LK+C +V A  + +++HG V++ G E                        
Sbjct: 129 EPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAEL 188

Query: 122 -------RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
                  R  V  T L+ GY   G ++ AR +F+ +P RD VSWN++I+ Y Q+    EA
Sbjct: 189 VFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEA 248

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L  ++ M+  +V  +  T+V +LS+CA  G+L +G ++     + G   ++ + NAL+DM
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y+KCG+LD A  +F  + ++D++SWN MI GY       EA++ F++M  +   P+ +TF
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLK-PGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           + +L  C++ G ++ G ++ H  + +  L       +  L+D+Y + G +E A +V    
Sbjct: 369 VSILPACAYLGALDLG-KWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM 427

Query: 354 SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
            P     W  ++    +H +  +  + +   ++ E     D   +  + AC+
Sbjct: 428 KPKSLGSWNAMISGLAMHGHANMA-LELFRQMRDEGFEPDDITFVGVLSACS 478



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 150/336 (44%), Gaps = 35/336 (10%)

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN--GVIEAARSVFDNMPERDLVSWNS 160
           K+    +++H  +I++G        + L+   A +  G +  A  +F+++ + +   WN+
Sbjct: 43  KSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNT 102

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I   + +S  + A+  Y RM    V  + +T   LL SCA VGA   G  +H    ++G
Sbjct: 103 MIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLG 162

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSR------------------------------ 250
                +V  +L++MYA+ G L  A  VFS+                              
Sbjct: 163 LESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFE 222

Query: 251 -MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            +  RD +SWN+MI GY   GR +EA++FF++M  A   P+  T + +L  C+  G +E 
Sbjct: 223 EIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLEL 282

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCK 369
           G  +    +  + L   ++    L+D+Y + G L+KA ++       D + W  ++G   
Sbjct: 283 G-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYS 341

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
            H N     +A+   +Q       D   ++ + AC 
Sbjct: 342 -HMNSYKEALALFRKMQQSNVEPNDVTFVSILPACA 376


>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Brachypodium distachyon]
          Length = 884

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/519 (39%), Positives = 301/519 (57%), Gaps = 30/519 (5%)

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQE 110
           P T   NS++R  ++S     A+ +   M      R + F+    LK C   + L+  ++
Sbjct: 378 PSTFCCNSILRCLSES----DALSFLRRMRTLG-RRGNAFSLAILLKPC---RTLSHARQ 429

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
           LH  V+  G+ R  +++T+LMR YA  GV + AR VFD M  +D V+WN +I+CY +   
Sbjct: 430 LHANVVIEGHLRDSLLATSLMRSYAICGVGDCARKVFDEMVMKDTVAWNVLITCYARNKR 489

Query: 171 HLEALKLYERMRF--EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
             + L L++ MR    +V  D  T + LL +C  +GAL+ G  +   A E G+   + V 
Sbjct: 490 TKDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLGALDFGEQIWEYAVEHGYGCELKVR 549

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N+++ MY +CG ++ A+ VF    ++ V++W++MI+G   +G G++AIS F++M  +G  
Sbjct: 550 NSVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANGFGEDAISAFEEMSRSGVV 609

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           PD  TF G+L  CSH GLV+EG  +F MM   Y + P ++HYGC+VDL GRAG L++A E
Sbjct: 610 PDGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNVRHYGCIVDLMGRAGLLDEAYE 669

Query: 349 VI--NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
           ++        D  +WRTLLG+C+IH +V++GE  + +L++L+A  AGDYVLL   YA   
Sbjct: 670 LVVKEMKVAPDATIWRTLLGACRIHGHVDLGEKVISHLIELKAQQAGDYVLLLNTYAAAG 729

Query: 407 DEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAK 466
           D E VA  RKL++ N I+TTPG + +E+  ++H+F+ DD SHP    IY KL+EI    +
Sbjct: 730 DWEKVAEVRKLMRENEIQTTPGCTTVELNGELHEFIADDASHPRKAEIYGKLDEINRHLR 789

Query: 467 FIGYTKDES--LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--- 521
             GY    S  L  +     E  L     YHSEKLAIAF L   P    +R+ KNLR   
Sbjct: 790 IAGYVPHVSSDLHDLDSEGKECAL----TYHSEKLAIAFALLVMPQRRPIRLAKNLRVCV 845

Query: 522 ---------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                    S  Y+R +IVRDR R+HHF  G CSC DYW
Sbjct: 846 DCHNFTKVFSGVYNRLVIVRDRTRFHHFNGGQCSCNDYW 884


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/544 (38%), Positives = 314/544 (57%), Gaps = 22/544 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ Y  S  +S+  A+L+F  +      AWN++I   +Q+    +A   +  M   
Sbjct: 250 GVGLIDMY--SKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTE 307

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +    T T +  LK+   ++A   C+++H   ++SG+E    V  +L+  Y   G +E 
Sbjct: 308 GIGFNQT-TLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVED 366

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VF+  P  DLV + S+++ Y Q     EAL+LY  M+   +  D F    LL++CA 
Sbjct: 367 ATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACAS 426

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + A   G  +H    + GF+  ++ GN+LV+MYAKCG+++ A C FSR+  R ++SW++M
Sbjct: 427 LSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAM 486

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I G   HG G EA+  FKQML  G  P+ IT + +LC C+H GLV E   YF+ M   + 
Sbjct: 487 IGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFG 546

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           ++P  +HY C++DL GRAGKLE A+E++N     ++ ++W  LLG+ +IH+N+++GE A 
Sbjct: 547 IEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAA 606

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           + L+ LE   +G +VLLA IYA     + VAR R+L+K   +K  PG SW+E+ ++V+ F
Sbjct: 607 EMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTF 666

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTK--DESLVAVSGSSSEDFLEKSSAYHSEKL 499
           +V D+SH  +  IY KL+E+    K  GY    +  L  V  S  E  L     +HSEKL
Sbjct: 667 IVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLL----YHHSEKL 722

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           A+AFGL  TP G  +R+ KNLR            S   SR++IVRD  R+HHFR+G CSC
Sbjct: 723 AVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSC 782

Query: 548 GDYW 551
           G+YW
Sbjct: 783 GEYW 786



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 174/348 (50%), Gaps = 12/348 (3%)

Query: 24  EWLLNSYAISVSSSLSY--AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81
           E++ NS  I  +    +  A+ LF+ I +    +WN+L   +  S    +A+  ++ M++
Sbjct: 45  EFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVL 104

Query: 82  ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
           + + RP+ F+ +  +  C  ++   + +++HG++I+ GY+     +  L+  YA  G++E
Sbjct: 105 SGI-RPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILE 163

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            A SVFD + + D+VSWN+II+      +H  AL+L   M    +  + FTL   L +CA
Sbjct: 164 DASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACA 223

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
            +    +G  LH    +M      ++G  L+DMY+KC ++D A  VF  M +RD+++WN+
Sbjct: 224 GMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNA 283

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           +I G+  +   +EA S F  M     H + I F         + +      Y    +   
Sbjct: 284 VISGHSQNEEDEEAASLFPLM-----HTEGIGFNQTTLSTVLKSIAALQANYMCRQIHAL 338

Query: 322 NLKPGIKH----YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +LK G +        L+D YG+ G +E A  V   S   D VL+ +L+
Sbjct: 339 SLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLV 386



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 172/373 (46%), Gaps = 14/373 (3%)

Query: 11  GLNKARQAHEIHGEWLLNSYAISVSSS------------LSYAQLLFNQIQNPQTQAWNS 58
           GL  + Q  +IHG  +   Y     S+            L  A  +F++I  P   +WN+
Sbjct: 123 GLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNA 182

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           +I          +A+     M  + +  P+ FT +  LKAC  +      ++LH  +I+ 
Sbjct: 183 IIAGCVLHEYHHRALELLREMNKSGMC-PNMFTLSSALKACAGMALRELGRQLHSSLIKM 241

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
                  +   L+  Y+    ++ AR VF  MPERD+++WN++IS ++Q     EA  L+
Sbjct: 242 DMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLF 301

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             M  E +G +  TL  +L S A + A  M   +H ++ + GF    YV N+L+D Y KC
Sbjct: 302 PLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKC 361

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G+++ A  VF      D++ + S++  Y   G+G+EA+  + +M   G  PDS     LL
Sbjct: 362 GHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLL 421

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C+     E+G +  H+ + ++     I     LV++Y + G +E A    +       
Sbjct: 422 NACASLSAYEQG-KQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGI 480

Query: 359 VLWRTLLGSCKIH 371
           V W  ++G    H
Sbjct: 481 VSWSAMIGGLAQH 493



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 138/278 (49%), Gaps = 1/278 (0%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           + F F   LKAC   K L   +++HG V+ +G++    V+ +L+  YA  G    ARS+F
Sbjct: 9   NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D +P+R +VSWN++ SCY  +  H EA+ L+  M    +  + F+L  +++ C  +    
Sbjct: 69  DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSV 128

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  +H    ++G+    +  NALVDMYAK G L+ A  VF  + K D++SWN++I G  
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCV 188

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           +H     A+   ++M  +G  P+  T    L  C+   L E G +    ++         
Sbjct: 189 LHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSF 248

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
              G L+D+Y +   ++ A  V       D + W  ++
Sbjct: 249 LGVG-LIDMYSKCNSMDDARLVFKLMPERDMIAWNAVI 285


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/569 (37%), Positives = 324/569 (56%), Gaps = 54/569 (9%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF-AQSLSPLQAIFYYNHMLMASLSRPDT 89
           ++S    ++YA  LF  + NP T  +N+L +AF + S +P  ++ +Y+HML   ++ P+ 
Sbjct: 45  SLSKHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVT-PNA 103

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGY----------------------------- 120
           FTF   ++AC   K   + ++LH  V++ G+                             
Sbjct: 104 FTFPSLIRAC---KLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCT 160

Query: 121 --ERCVVVSTNLMRGYAANGVIEAARSVFDNMP-ERDLVSWNSIISCYTQASFHLEALKL 177
             +  VV  T+L+ GY+  G+++ A  VF+ MP +++ VSWN++I+C+ + +   EA  L
Sbjct: 161 MSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFAL 220

Query: 178 YERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           + RMR E  + LD F    +LS+C  VGAL  G+++H+   + G V    +   ++DMY 
Sbjct: 221 FRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYC 280

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM-AGFHPDSITFL 295
           KCG LD AF VF  ++ + V SWN MI G+ +HG+G++AI  FK+M   A   PDSITF+
Sbjct: 281 KCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFV 340

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
            +L  C+H GLVEEG  YF  MV  + + P  +HYGC+VDL  RAG+LE+A +VI+    
Sbjct: 341 NVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPM 400

Query: 356 S-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
           S D  +   LLG+C+IH N+E+GE     +++L+  ++G YV+L  +YA     E VA  
Sbjct: 401 SPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGV 460

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
           RKL+   G+K  PG+S IE+   V++FV   + HP A+ IY K+ E++   + +G+  D 
Sbjct: 461 RKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDT 520

Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
               V     E+  E    YHSEKLAIA+GL  T  G +LR+ KNLR            S
Sbjct: 521 D--GVLHDLVEEERENPLFYHSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMIS 578

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             Y  D+I+RDR R+HHF +G CSC DYW
Sbjct: 579 KVYDCDIIIRDRSRFHHFSNGECSCKDYW 607


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/563 (37%), Positives = 315/563 (55%), Gaps = 20/563 (3%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           G + HAR + L      H +    LL  YA      L  AQ +F+++ +P T +W +LI 
Sbjct: 137 GEQLHARSLKLPSHTNPHVLTS--LLTLYA--RCGLLHRAQRVFDEMPHPSTVSWTALIT 192

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
           A+  +   L+   +      A+  RPD+FT    L AC RV  L   + +     + G  
Sbjct: 193 AYMDA-GDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIA 251

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           + V V+T  +  Y   G +  AR VFD M ++D V+W +++  Y       EAL L+  M
Sbjct: 252 QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAM 311

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           + E V  D + +   LS+C  +GAL++G    R+     F+++  +G AL+DMYAKCG+ 
Sbjct: 312 QAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGST 371

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
             A+ VF +MRK+D++ WN+MI+G G+ G    A +   QM  +G   +  TF+GLLC C
Sbjct: 372 AEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSC 431

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVL 360
           +H GL+++G  YFH M   Y++ P I+HYGC+VDL  RAG L++A ++I +   P++ V+
Sbjct: 432 THTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVI 491

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
              LLG CKIHRN E+ E  +  L++LE  ++G+YV+L+ IY+     E  A+ R  +K 
Sbjct: 492 LGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKE 551

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
            G++  P  SW+E   +VH+F V DKSHP +D IY+KL+E+    K +GY     +V   
Sbjct: 552 KGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFD 611

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
               E   E +  +HSEKLAIAF L  T  G ++R+ KNLR            S    R+
Sbjct: 612 VEDEEK--EHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHRE 669

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +IVRD  R+H FRDG CSC DYW
Sbjct: 670 IIVRDNNRFHCFRDGSCSCNDYW 692



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 14/192 (7%)

Query: 188 LDGFTLVCLLSSCAHVG-------------ALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L    L CLL + +H+               L  G  LH  + ++    + +V  +L+ +
Sbjct: 103 LHALRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTL 162

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YA+CG L  A  VF  M     +SW ++I  Y   G   EA+   +     G  PDS T 
Sbjct: 163 YARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTA 222

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           + +L  C+    +  G E       +  +   +      VDLY + G++ KA EV +   
Sbjct: 223 VRVLTACARVADLATG-ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMR 281

Query: 355 PSDPVLWRTLLG 366
             D V W  ++G
Sbjct: 282 DKDAVAWGAMVG 293


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/565 (35%), Positives = 313/565 (55%), Gaps = 51/565 (9%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S     A   F ++ +    +WNS+I  ++Q    L+A+  ++ ML     +PD FT   
Sbjct: 221 SGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLAS 280

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERC------------------------------- 123
            L AC  ++ LN  +++H +++R+  E                                 
Sbjct: 281 ILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSN 340

Query: 124 --VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
             ++  T+L+ GY   G ++ AR +F+ + +RD+V+W ++I  Y Q     +AL+L+  M
Sbjct: 341 LNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLM 400

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
             E    + +TL  +LS  + +  L  G  +H  A + G   +  V NAL+ MYAK GN+
Sbjct: 401 VNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNI 460

Query: 242 DSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           + A  VF     K++++SW SMI+    HG G EAI+ F++ML  G  PD IT++G+L  
Sbjct: 461 NVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSA 520

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP-- 358
           C+H GLVE+G +Y++MM   + ++P + HY C++DLYGRAG L++A   I  S P +P  
Sbjct: 521 CTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIE-SMPIEPDN 579

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
           + W +LL SCKIH+N ++ ++A + L+ ++  ++G Y+ LA +Y+     E  A+TRKL+
Sbjct: 580 IAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLM 639

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
           K  G++   G SWI I N+VH F V+D  HP  D IY+ + EI    K +G+  D    +
Sbjct: 640 KDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTE--S 697

Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
           V     E+  E+   YHSEKLAIAFGL  TP+ T+LRI+KNLR            S    
Sbjct: 698 VLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVG 757

Query: 527 RDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++IVRD  R+HHF+DG CSC DYW
Sbjct: 758 REIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 191/447 (42%), Gaps = 99/447 (22%)

Query: 23  GEWLLNSYAI--SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS-------------- 66
           G +L+N+     + + SL +A  +F+++    T +WN+LI  +A+               
Sbjct: 44  GVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMP 103

Query: 67  ----LSPLQAIFYYNHM------------LMASLSRPDTFTFTFTLKACERVKALNKCQE 110
               +S    I  YN              +++    P  FT +  L +C   + L+  ++
Sbjct: 104 DCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRK 163

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC------ 164
           +H FV++ G   CV V+T+L+  YA  G    A+ VFD M  +++ +WN++IS       
Sbjct: 164 IHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQ 223

Query: 165 -------------------------YTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLS 198
                                    Y+Q  ++LEAL ++ +M  E  +  D FTL  +LS
Sbjct: 224 FELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILS 283

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC-------------------- 238
           +CA++  LN+G  +H          S  VGNAL+ MYAK                     
Sbjct: 284 ACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNI 343

Query: 239 -------------GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
                        GN+  A  +F+++R RDV++W +MIVGY  +G  ++A+  F+ M+  
Sbjct: 344 IAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNE 403

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
           G  P+S T   +L   S   ++E G +  H    +            L+ +Y + G +  
Sbjct: 404 GPEPNSYTLAAMLSVSSSLTILEHGKQ-IHASAIKAGESSTPSVTNALIAMYAKTGNINV 462

Query: 346 ALEVIN-TSSPSDPVLWRTLLGSCKIH 371
           A  V +  +   + V W +++ +   H
Sbjct: 463 AKRVFDLPNGKKEIVSWTSMIMALAQH 489



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 136/329 (41%), Gaps = 64/329 (19%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           F   L+   R+K     + +H  +I+ G    V +  NLM  YA  G +  A  VFD MP
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 152 ERDLVSWNSIISCYT-QASFHLEALKLYE------------------------------R 180
            +   SWN++IS Y  Q +F +    LYE                              +
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M  E V    FT+  +LSSCA    L++G  +H    ++G    V V  +L++MYAKCG+
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 241 LDSAFCVFSRMR-------------------------------KRDVLSWNSMIVGYGVH 269
              A  VF RM                                 RD++SWNSMI GY   
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 270 GRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           G   EA++ F +ML      PD+ T   +L  C++   +  G +  H  + R   +    
Sbjct: 253 GYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ-IHAYILRAETETSGA 311

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSD 357
               L+ +Y ++G +E A  ++  +  S+
Sbjct: 312 VGNALISMYAKSGGVEIARLIVEHNRTSN 340


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/567 (38%), Positives = 319/567 (56%), Gaps = 24/567 (4%)

Query: 6   HARYVGLNKARQAHEIHGEWLLN---SYAISVSSSLSYAQLLFNQIQNPQTQAW-NSLIR 61
           HA  V      QAH      LL           + L+YA+ +F++I +P    W N+L+R
Sbjct: 48  HAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLR 107

Query: 62  AFAQSLSPLQAIFYYNHM---LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
            +A+             +   +M     PDT+TF   LKAC   +A  + ++ HG  +++
Sbjct: 108 GYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKA 167

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G      V+  L+  YA  G + AAR +FD M    +VS+N++I+   ++S   EAL L+
Sbjct: 168 GAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLF 227

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             M+ + +     TL+ +LS+CA +GAL +G ++H    +M     V V  AL+DMYAKC
Sbjct: 228 REMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKC 287

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G+L+ A  VF  M  RD  +W+ M+V Y  HG G EAIS F++M   G  PD +TFLG+L
Sbjct: 288 GSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVL 347

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             CSH G+V EG++YF  M   Y +  GIKHYGC+ DL  R+G+LE+A + I+   P  P
Sbjct: 348 YACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFID-ELPIKP 405

Query: 359 --VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
             +LWRTLL +C  H +V++G+   + +++L+ +  GDYV+ + + A T   E +   RK
Sbjct: 406 TAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRK 465

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
           L+   G+   PG S IEI N VH+F   D SHP +    R ++E++ + K +GY  + S 
Sbjct: 466 LMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSH 525

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
           V       E+    S  YHSEKLAI+FGL  T  GT+LRIVKNLR            S+ 
Sbjct: 526 V-FHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMV 584

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++R +I+RD  R+HHF DG+CSCGDYW
Sbjct: 585 FNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/526 (38%), Positives = 319/526 (60%), Gaps = 21/526 (3%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA-SLSRPDTFTFTF 94
           +++  A L+F  + +P   A N+ ++A AQ+     AI ++NH + + +   PD FTFT 
Sbjct: 38  ANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTS 97

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM--PE 152
            LKAC  +  +   Q++H  V + G+E  + V  +L+  Y   G +  AR +FD M   +
Sbjct: 98  VLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRD 157

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           R++V WN++I+ Y Q   + +A++++  M+ F  V  +  TLV +L +CAH+GAL++G +
Sbjct: 158 RNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKW 217

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +            +++GNAL DMYAKCG +  A  VF++M +RDV+SW+ +I G  ++G 
Sbjct: 218 IDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGH 277

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
            DEA   F +ML  G  P+ + F+GLL  C+H GLV++G+  F+ M   Y + P ++HYG
Sbjct: 278 ADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYG 337

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
           C+VDL  RAG+L+KA ++I +S P  P  ++W  LLG C+I+R+   G+  ++++++L++
Sbjct: 338 CVVDLLSRAGELDKAEDMI-SSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDS 396

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
             +G YV LA +Y+     +  A+ R  ++ NG+  TPG SWIE+ N VH+F + D SHP
Sbjct: 397 DHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHP 456

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
           +++ IY  + E+M + K  GY     LV  S    E   E + + HSEKLAIAFGL +T 
Sbjct: 457 ESNKIYSMIRELMWKMKLAGYKPKTDLVVHSIDEEEK--EDALSIHSEKLAIAFGLISTS 514

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDG 543
           +GT++R+VKNLR            S    R++IVRDR R+HHF+DG
Sbjct: 515 EGTTIRVVKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDG 560


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/563 (37%), Positives = 315/563 (55%), Gaps = 20/563 (3%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           G + HAR + L      H +    LL  YA      L  AQ +F+++ +P T +W +LI 
Sbjct: 90  GEQLHARSLKLPSHTNPHVLTS--LLTLYA--RCGLLHRAQRVFDEMPHPSTVSWTALIT 145

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
           A+  +   L+   +      A+  RPD+FT    L AC RV  L   + +     + G  
Sbjct: 146 AYMDA-GDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIA 204

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           + V V+T  +  Y   G +  AR VFD M ++D V+W +++  Y       EAL L+  M
Sbjct: 205 QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAM 264

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           + E V  D + +   LS+C  +GAL++G    R+     F+++  +G AL+DMYAKCG+ 
Sbjct: 265 QAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGST 324

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
             A+ VF +MRK+D++ WN+MI+G G+ G    A +   QM  +G   +  TF+GLLC C
Sbjct: 325 AEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSC 384

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVL 360
           +H GL+++G  YFH M   Y++ P I+HYGC+VDL  RAG L++A ++I +   P++ V+
Sbjct: 385 THTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVI 444

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
              LLG CKIHRN E+ E  +  L++LE  ++G+YV+L+ IY+     E  A+ R  +K 
Sbjct: 445 LGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKE 504

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
            G++  P  SW+E   +VH+F V DKSHP +D IY+KL+E+    K +GY     +V   
Sbjct: 505 KGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFD 564

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
               E   E +  +HSEKLAIAF L  T  G ++R+ KNLR            S    R+
Sbjct: 565 VEDEEK--EHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHRE 622

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +IVRD  R+H FRDG CSC DYW
Sbjct: 623 IIVRDNNRFHCFRDGSCSCNDYW 645



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 14/192 (7%)

Query: 188 LDGFTLVCLLSSCAHVG-------------ALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L    L CLL + +H+               L  G  LH  + ++    + +V  +L+ +
Sbjct: 56  LHALRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTL 115

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YA+CG L  A  VF  M     +SW ++I  Y   G   EA+   +     G  PDS T 
Sbjct: 116 YARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTA 175

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           + +L  C+    +  G E       +  +   +      VDLY + G++ KA EV +   
Sbjct: 176 VRVLTACARVADLATG-ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMR 234

Query: 355 PSDPVLWRTLLG 366
             D V W  ++G
Sbjct: 235 DKDAVAWGAMVG 246


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/541 (37%), Positives = 320/541 (59%), Gaps = 19/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+ + A+S   S+ YA  +F Q+    +  +N+++R   + ++  +A+  Y  M    + 
Sbjct: 69  LVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGV- 127

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +PD FT+   LKAC R+ A+ +  ++H  +++ G E  V V  +L+  Y   G I    +
Sbjct: 128 KPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCA 187

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV-GLDGFTLVCLLSSCAHVG 204
           VF+ M ER + SW+++I+ +       + L+L   M  E     +   LV +LS+C H+G
Sbjct: 188 VFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLG 247

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL++G  +H          +V V  +L++MY KCG+L    C+F +M K++ LS++ MI 
Sbjct: 248 ALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMIS 307

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           G  +HG G E +  F +ML  G  PD I ++G+L  CSH GLV+EG++ F+ M   + ++
Sbjct: 308 GLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIE 367

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMK 382
           P I+HYGC+VDL GRAGK+++ALE+I  S P +P  VLWR+LL + K+H N++ GEIA K
Sbjct: 368 PTIQHYGCMVDLMGRAGKIDEALELIK-SMPMEPNDVLWRSLLSASKVHNNLQAGEIAAK 426

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            L +L++  A DYV+L+ +YA  +  E VA+TR  + S G+   PG+S +E+  ++H+FV
Sbjct: 427 QLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFV 486

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             D  HP ++ +Y  L ++  + KF GY+ D + V       E   ++  + HS+KLAIA
Sbjct: 487 SQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEK--KQRLSGHSQKLAIA 544

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           + L  T  G+ +RIV+NLR            SI + R++ VRDR R+HHF+DG CSC DY
Sbjct: 545 YALIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDY 604

Query: 551 W 551
           W
Sbjct: 605 W 605



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 162/367 (44%), Gaps = 14/367 (3%)

Query: 72  AIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL------HGFVIRSGYERCVV 125
           ++ +  H+L++    P +   +F L   E V  L KC  +      H  +++ G      
Sbjct: 5   SVLHQTHVLVSREDPPQSPELSFKLGEKECVSLLKKCSNMEEFKQSHARILKLGLFGDSF 64

Query: 126 VSTNLMRGYAAN--GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
            ++NL+   A +  G ++ A S+F  M E     +N+++  + +     EAL  Y+ M  
Sbjct: 65  CASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAE 124

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
             V  D FT   LL +CA + A+  G+ +H    ++G    V+V N+L+ MY KCG +  
Sbjct: 125 RGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGV 184

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF-HPDSITFLGLLCGCS 302
              VF +M +R V SW+++I  +   G   + +     M   G+   +    + +L  C+
Sbjct: 185 CCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACT 244

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           H G ++ G    H  + R      +     L+++Y + G L K + +    +  + + + 
Sbjct: 245 HLGALDLG-RSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYS 303

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIK 419
            ++    +H     G      +++ +     D V +  + AC+     +EG+    ++  
Sbjct: 304 VMISGLAMHGYGREGLRIFTEMLE-QGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKL 362

Query: 420 SNGIKTT 426
            +GI+ T
Sbjct: 363 EHGIEPT 369


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/530 (36%), Positives = 316/530 (59%), Gaps = 17/530 (3%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           +S++YA  +F  I +P T  + ++IR +   +S   A+ +YN M+   +  PD FT+   
Sbjct: 81  NSMNYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGI-EPDNFTYPCL 139

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LKAC R+KA+ + +++HG V + G E  V V  +L+  Y   G +E + +VF+ +  +  
Sbjct: 140 LKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSA 199

Query: 156 VSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            SW+S+ S         E L L+  M R  ++  +   +V  LS+CA+ GALN+G+ +H 
Sbjct: 200 ASWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHG 259

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                    ++ V  +LVDMY KCG +D+A  +F +M KR+ L++++MI G+ +HG G+ 
Sbjct: 260 FLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGES 319

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F +M+  G  PD + ++ LL  CSH GLV+EG   F  M+    ++P  +HYGCLV
Sbjct: 320 ALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLV 379

Query: 335 DLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           DL GRAG LE+ALE I +     + V+WR+ L  C++H+N+E+G+IA + L++L + + G
Sbjct: 380 DLLGRAGLLEEALETIQSIPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPG 439

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
           DY+L++ +Y+     + VAR+R  I   G+K TPG+S +++  + H+FV  D+SHP    
Sbjct: 440 DYLLISNMYSQAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQCKE 499

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           IY+ L ++  + KF GY+ D  L  +  +  E+  ++    HS+K+AIAF L  TP G+ 
Sbjct: 500 IYKMLHQMEWQLKFEGYSPD--LTQILLNVDEEEKKERLKGHSQKVAIAFALLYTPPGSI 557

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++I +NLR            S+ Y R+++VRDR R+H F+ G CSC DYW
Sbjct: 558 IKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 607


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/527 (37%), Positives = 305/527 (57%), Gaps = 16/527 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A+ LF+++      +WN++I  +AQ     +A+  +  M  A++  P+  T    L 
Sbjct: 211 MDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVP-PNESTIVSVLS 269

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC +  AL+    +  ++   G    + +   L+  Y+  G ++ AR +FD+M ERD++S
Sbjct: 270 ACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVIS 329

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN +I  YT    + EAL L+  M    V     T + +L SCAH+GA+++G ++H    
Sbjct: 330 WNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYIN 389

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +     S  +  +L+D+YAKCGN+ +A  VF  M+ + + SWN+MI G  +HG+ D+A  
Sbjct: 390 KNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFE 449

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M   G  P+ ITF+G+L  C H GLV+ G ++F  MV  Y + P  +HYGC++DL 
Sbjct: 450 LFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLL 509

Query: 338 GRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAG  E+A  ++ N     D  +W +LLG+C+ H  VE+GE+  + L +LE  + G YV
Sbjct: 510 GRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYV 569

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+ IYA     + VAR R  +   G+K  PG + IE+ N VH+F+V DK HP ++ IYR
Sbjct: 570 LLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYR 629

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            LEE+  + K  G+  D S V       E++ E + ++HSEKLAIAFGL +T  GT +RI
Sbjct: 630 MLEEVDEQLKVFGFVADTSEVLY--DMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRI 687

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +KNLR            S  ++R++I RDR R+HHF+DG CSC DYW
Sbjct: 688 IKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 201/377 (53%), Gaps = 33/377 (8%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+   A+S S  +SYA  LFN I+ P    WNS+IR  + SLSP  A+ ++  M+ + + 
Sbjct: 67  LIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGV- 125

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR------------- 132
            P+++TF F LK+C ++ + ++ +++H  V++ G+   V + T+L+              
Sbjct: 126 EPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQL 185

Query: 133 ------------------GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
                             GYA  G ++ AR +FD MP +D+VSWN++I+ Y Q     EA
Sbjct: 186 VFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEA 245

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L L+E MR  +V  +  T+V +LS+CA   AL++G  +     + G   ++ + NAL+DM
Sbjct: 246 LLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDM 305

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y+KCG+L +A  +F  M +RDV+SWN MI GY       EA++ F++ML +G  P  ITF
Sbjct: 306 YSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITF 365

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           L +L  C+H G ++ G ++ H  +++            L+DLY + G +  A +V +   
Sbjct: 366 LSILPSCAHLGAIDLG-KWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMK 424

Query: 355 PSDPVLWRTLLGSCKIH 371
                 W  ++    +H
Sbjct: 425 IKSLASWNAMICGLAMH 441



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 144/311 (46%), Gaps = 40/311 (12%)

Query: 95  TLKACERVKALNKCQ------ELHGFVIRSGYERCVVVSTNLMRGYAAN--GVIEAARSV 146
            L+    +K L+KCQ      ++H  +I++G    +   + L+   A +  G I  A S+
Sbjct: 26  VLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISL 85

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           F+++ E +L  WNS+I   + +     AL  + RM +  V  + +T   LL SCA + + 
Sbjct: 86  FNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASA 145

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR---------------- 250
           + G  +H    ++GFV  V++  +L++MYA+ G +++A  VF +                
Sbjct: 146 HEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGY 205

Query: 251 ---------------MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
                          M  +DV+SWN+MI GY   GR  EA+  F+ M  A   P+  T +
Sbjct: 206 ALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIV 265

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
            +L  C+    ++ G      +  R  L   +K    L+D+Y + G L+ A E+ +    
Sbjct: 266 SVLSACAQSNALDLGNSMRSWIEDR-GLCSNLKLVNALIDMYSKCGDLQTARELFDDMLE 324

Query: 356 SDPVLWRTLLG 366
            D + W  ++G
Sbjct: 325 RDVISWNVMIG 335


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/543 (39%), Positives = 304/543 (55%), Gaps = 20/543 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L    A+S +  L+YA L+ N +    +   N++IRA++Q+  P QA+  +  ML    S
Sbjct: 32  LFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTS 91

Query: 86  -RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
            RPD FT+ F LK+C R+K     ++LHG + +SG E    VS  L+  Y++ G    A 
Sbjct: 92  PRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAY 151

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VF  M +RD+VSW S+I  +      LEA++L+E M  + V  +  T+V +L +CA  G
Sbjct: 152 KVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAG 211

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           A+ MG  +  +  E        V  AL+DMYAKCG++ SA  VF  +  +DV +W +MI 
Sbjct: 212 AVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMIS 271

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           G   HG  +EA++ F QM   G  PD  T   +L  C + G   EG  YF+ M  +Y +K
Sbjct: 272 GLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIK 331

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMK 382
           P I+HYGC+VDL  R G L++A E I    P +P  VLWRTL+ + K+H +++  E  MK
Sbjct: 332 PTIQHYGCMVDLLARTGHLDEAEEFIR-KMPIEPDVVLWRTLIWASKVHGDIDRSEQLMK 390

Query: 383 N--LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
           +  L+++++   G YVLL  +YA        A+ R+L+   G+   PG S IE+   VH+
Sbjct: 391 DRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHE 450

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           F   D  H +A+ IY KL+E+  R K  GY    S V +   + E   +    +HSEKLA
Sbjct: 451 FAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLR--HHSEKLA 508

Query: 501 IAFGLATTPDGTSLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCG 548
           +AFGL  T  GT +RIVKNLRS              Y +D+IVRDR+R+HHF +G CSC 
Sbjct: 509 VAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCK 568

Query: 549 DYW 551
           DYW
Sbjct: 569 DYW 571


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/552 (37%), Positives = 320/552 (57%), Gaps = 20/552 (3%)

Query: 14  KARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAI 73
           K  Q   I G  +++ YA      +  A+ +F++++     +W+++I A+       +A+
Sbjct: 160 KKFQLDVILGTAMIDMYA--KCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKAL 217

Query: 74  FYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRG 133
             +  M+++S   PD  T    L AC  +K L   + +H  V + G +    V   L+  
Sbjct: 218 DLFR-MMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDM 276

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           Y     IE AR +FD MPERDLV+W  +I  Y +     E+L L+++MR E V  D   +
Sbjct: 277 YGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAM 336

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
           V ++ +CA +GA++    +        F   V +G A++DM+AKCG ++SA  +F RM +
Sbjct: 337 VTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEE 396

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           ++V+SW++MI  YG HG+G +A+  F  ML +G  P+ IT + LL  CSH GLVEEG+ +
Sbjct: 397 KNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRF 456

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHR 372
           F +M   Y+++  +KHY C+VDL GRAG+L++AL++I + +   D  LW   LG+C+ H+
Sbjct: 457 FSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHK 516

Query: 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWI 432
           +V + E A  +L++L+  + G Y+LL+ IYA     E VA+TR L+    +K  PGW+WI
Sbjct: 517 DVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWI 576

Query: 433 EIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSS 492
           E+ N+ H+F V D +HP +  IY  L+ + ++ + +GY  D + V       ++ L+   
Sbjct: 577 EVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVL---HDVDEELKIGI 633

Query: 493 AY-HSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHH 539
            Y HSEKLAIAFGL  TP+ T +RI+KNLR            S    R +IVRD  R+HH
Sbjct: 634 LYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHH 693

Query: 540 FRDGLCSCGDYW 551
           F++G CSCGDYW
Sbjct: 694 FKEGACSCGDYW 705



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 171/324 (52%), Gaps = 6/324 (1%)

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
           +RPD +T  F ++AC  +K L   + +H  V + G +    V   L+  Y     IE AR
Sbjct: 26  ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDAR 85

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            +FD M ERDLV+W  +I  Y +     E+L L+E+MR E V  D   +V ++ +CA +G
Sbjct: 86  FLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLG 145

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           A++    +        F   V +G A++DMYAKCG ++SA  +F RM +++V+SW++MI 
Sbjct: 146 AMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIA 205

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
            YG HG+G +A+  F+ ML +G  PD IT   LL  CS    ++ G    H +V ++ L 
Sbjct: 206 AYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMG-RLIHHIVYKFGLD 264

Query: 325 PGIKHYGC--LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
             + H+ C  LVD+YG+  ++E A  + +     D V W  ++G      N     + + 
Sbjct: 265 --LDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNAN-ESLVLF 321

Query: 383 NLVQLEAASAGDYVLLATIYACTK 406
           + ++ E        ++  ++AC K
Sbjct: 322 DKMREEGVVPDKVAMVTVVFACAK 345



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 165/331 (49%), Gaps = 2/331 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+++Q      W  +I  +A+     +++  +  M    +  PD       + AC 
Sbjct: 84  ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV-PDKVAMVTVVFACA 142

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++ A++K + +  ++ R  ++  V++ T ++  YA  G +E+AR +FD M E++++SW++
Sbjct: 143 KLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSA 202

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+ Y       +AL L+  M    +  D  TL  LL +C+ +  L MG  +H I  + G
Sbjct: 203 MIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFG 262

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
                +V  ALVDMY KC  ++ A  +F +M +RD+++W  MI GY   G  +E++  F 
Sbjct: 263 LDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFD 322

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M   G  PD +  + ++  C+  G + +        + R   +  +     ++D++ + 
Sbjct: 323 KMREEGVVPDKVAMVTVVFACAKLGAMHKA-RTIDDYIQRKKFQLDVILGTAMIDMHAKC 381

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           G +E A E+ +     + + W  ++ +   H
Sbjct: 382 GCVESAREIFDRMEEKNVISWSAMIAAYGYH 412


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 225/613 (36%), Positives = 333/613 (54%), Gaps = 85/613 (13%)

Query: 17  QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYY 76
           Q H + G  L+  YA    S+L++A  +F  + NP    +N +I+   Q+  P +AI  Y
Sbjct: 60  QDHYVSGT-LVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCY 118

Query: 77  NHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS------------------ 118
             M++A  +RP+ FT+    KAC   +A  +  ++H  VI+                   
Sbjct: 119 YKMMIAH-ARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGS 177

Query: 119 ---------------------------GYERCVVV----------------STNLM-RGY 134
                                      GY +C  V                S N+M  G 
Sbjct: 178 FGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGM 237

Query: 135 AANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLV 194
           A  G+IE AR +F+ M E++ +SW+++I  Y +  ++ EAL+++  M+ E++    F L 
Sbjct: 238 AKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLS 297

Query: 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
            +L++CA++GAL+ G ++H             +G ALVDMYAKCG LD A+ VF +M K+
Sbjct: 298 SVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKK 357

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           +V +WN+MI G G+HGR ++AI  F +M    F P+ IT LG+L  C+H G+V+EG+  F
Sbjct: 358 EVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIF 417

Query: 315 HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHR 372
           + M   Y ++PG++HYGC+VDL GRAG L +A EV+  S P +P   +W  LLG+C+ H 
Sbjct: 418 NSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVM-YSMPMEPSAAVWGALLGACRKHG 476

Query: 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWI 432
           +VE+GE   K L++LE  ++G Y LL+ IYA     + VA  RKL+K  G+KT+ G S I
Sbjct: 477 DVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMI 536

Query: 433 EIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES--LVAVSGSSSEDFLEK 490
           +    VH+F + D SHP    IY  L+ ++ R K  G++ + S  L  +     E  L+ 
Sbjct: 537 DFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQ- 595

Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYH 538
              YHSEKLAIAFGL  T  GT++ +VKNLR            S  Y R++IVRDR RYH
Sbjct: 596 ---YHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYH 652

Query: 539 HFRDGLCSCGDYW 551
           HF+ G CSC D+W
Sbjct: 653 HFKTGTCSCKDFW 665



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 122/283 (43%), Gaps = 17/283 (6%)

Query: 78  HMLMASLSRPDTFTFTFTLKA------CERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131
           H+     S  + FT   + K        +   +L+  +++H   +R+G+ +   VS  L+
Sbjct: 10  HLASKDFSTENKFTSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLV 69

Query: 132 RGYAANGV--IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           + YA      +  A  VF+ +P  ++  +N II    Q +   +A+  Y +M       +
Sbjct: 70  KCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPN 129

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
            FT   L  +C    A   G+ +H    + G    V++ +A + MY   G ++ A  +  
Sbjct: 130 KFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLG 189

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
                DV+ +N+MI GY   G  + A   F  M        ++    ++ G +  G++EE
Sbjct: 190 EDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNV----MVSGMAKCGMIEE 245

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
             E F+ M  +  +      +  ++D Y + G  ++ALEV N 
Sbjct: 246 ARELFNEMKEKNEIS-----WSAMIDGYIKGGYYKEALEVFNV 283


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 315/564 (55%), Gaps = 49/564 (8%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  +  AQ+ F Q+      +WN++I  + Q     +A+  ++ MLM S S+PD FT   
Sbjct: 224 SGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLAS 283

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERC------------------------------- 123
            L AC  ++ L   +++H  +IR+ ++                                 
Sbjct: 284 ALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISN 343

Query: 124 --VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
             V+  T L+ GY   G I  AR +FD++  RD+V+W ++I  Y Q  F+ +A++L+  M
Sbjct: 344 LDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSM 403

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
             E    + +TL  +LS  + + +L+ G  +H  A   G   SV V NAL+ MYAK G++
Sbjct: 404 IKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSI 463

Query: 242 DSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           + A  VF+ +  KRD ++W SMI+    HG G+EA++ F++ML  G  PD IT++G+L  
Sbjct: 464 NDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSA 523

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPV 359
           C+H GLVE+G  Y+++M + + + P   HY C++DL+GRAG L++A   I N     D +
Sbjct: 524 CTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVI 583

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
            W +LL SCK+H+NVE+ E+A + L+ +E  ++G Y  LA +Y+     E  A  RK +K
Sbjct: 584 AWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMK 643

Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
             G+K   G+SW++I N+VH F VDD  HP  D IY  + +I    K +G+  D    +V
Sbjct: 644 DKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTE--SV 701

Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
                E+  E+  ++HSEKLAIAFGL  TP+ T+LRI+KNLR            S    R
Sbjct: 702 LHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGR 761

Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
           ++IVRD  R+HHF++GLCSC DYW
Sbjct: 762 EIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 193/461 (41%), Gaps = 76/461 (16%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F ++  P + +W ++I  + Q      AI  +  M+   +  P  FT T  L 
Sbjct: 95  LEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVP-PTQFTLTNVLA 153

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +C  V+ L   +++H FV++ G    + V+ +L+  YA +G    A+ VFD M  +   S
Sbjct: 154 SCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSS 213

Query: 158 WNSIISC-------------------------------YTQASFHLEALKLYERMRFEDV 186
           WN++IS                                Y Q  F  EAL ++ +M  +  
Sbjct: 214 WNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSS 273

Query: 187 G-LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG------ 239
              D FTL   LS+CA++  L +G  +H       F     VGNAL+ MY+K G      
Sbjct: 274 SKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQ 333

Query: 240 ---------NLD------------------SAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
                    NLD                   A  +F  +R RDV++W +MIVGY  +G  
Sbjct: 334 KIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFN 393

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            +A+  F+ M+  G  P++ T   +L   S    ++ G +  H   +R      +     
Sbjct: 394 QDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQ-IHASATRSGNASSVSVSNA 452

Query: 333 LVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ-LEAA 390
           L+ +Y ++G +  A  V N      D + W +++ +   H    +GE A+    + LE  
Sbjct: 453 LITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHG---LGEEALTLFERMLENG 509

Query: 391 SAGDYVL-LATIYACTK---DEEGVARTRKLIKSNGIKTTP 427
              D++  +  + ACT     E+G +    +  ++ I  TP
Sbjct: 510 IKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTP 550



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 35/261 (13%)

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           ++ GYA  G +E A  VF+ MPE D VSW ++I  Y Q      A+ ++  M  +DV   
Sbjct: 85  ILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPT 144

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
            FTL  +L+SCA V  L +G  +H    + G    + V N+L++MYAK G+  +A  VF 
Sbjct: 145 QFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFD 204

Query: 250 RMR-------------------------------KRDVLSWNSMIVGYGVHGRGDEAISF 278
           RM+                               +RDV+SWN+MI GY  HG   EA+  
Sbjct: 205 RMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDI 264

Query: 279 FKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKPGIKHYGCLVDL 336
           F +MLM +   PD  T    L  C++   ++ G + + H++ + ++    + +   L+ +
Sbjct: 265 FSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGN--ALISM 322

Query: 337 YGRAGKLEKALEVINTSSPSD 357
           Y ++G +E A ++I  S  S+
Sbjct: 323 YSKSGGVEIAQKIIEQSMISN 343



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 2/179 (1%)

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           HR+  EM  V+SV+  N ++  YAK G L+ A  VF  M + D +SW +MIVGY   G+ 
Sbjct: 68  HRVFDEMP-VKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQF 126

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           + AI  F++M+     P   T   +L  C+    +  G    H  V ++ L   I     
Sbjct: 127 ENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIG-RKVHSFVVKHGLSSYISVANS 185

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           L+++Y ++G    A  V +         W T++ S      V++ ++  + +++ +  S
Sbjct: 186 LLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVS 244



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G  +H    + G    V++ N L++ YAK G +  A  VF  M  + V SWN ++ GY  
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
            GR +EA   F++M      PDS+++  ++ G +  G  E  +  F  MVS
Sbjct: 92  GGRLEEAHRVFEEMP----EPDSVSWTAMIVGYNQMGQFENAIGMFREMVS 138


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/588 (35%), Positives = 315/588 (53%), Gaps = 77/588 (13%)

Query: 38   LSYAQLLFNQIQNPQTQAWNSLIRAFAQ--------------------SLSPLQAIFYYN 77
            +  A+L+F++I NP   AWN++I  + Q                    S + + A F  N
Sbjct: 474  IQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQN 533

Query: 78   HM------LMASLSR----PDTFTFTFTLKACERVKALNKCQELHGFVIRSG-------- 119
                    L+  L R    P   +FT  L AC  +  +   + +H   I++G        
Sbjct: 534  EESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVM 593

Query: 120  ------YERC-----------------VVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
                  Y +C                  V   +L+ G + N +++ AR VF+ MP+RD+V
Sbjct: 594  NGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVV 653

Query: 157  SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            SW +IIS Y QA     AL L+  M    +  +  T+  LLS+C ++GA+ +G   H + 
Sbjct: 654  SWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALI 713

Query: 217  CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
             ++GF   ++VGN+L+ MY KCG  D  FCVF  M + D+++WN+++VG   +G G EAI
Sbjct: 714  FKLGFDTFLFVGNSLITMYFKCGYED-GFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAI 772

Query: 277  SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
              F+QM + G  PD ++FLG+LC CSH GLV+EG  +F+ M  +Y + P + HY C+VDL
Sbjct: 773  KIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDL 832

Query: 337  YGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
             GRAG L +A  +I N     D V+W  LLG+C+IHRNVE+G+   + L Q+    +  Y
Sbjct: 833  LGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATY 892

Query: 396  VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
            VLL+ ++A     + VA  RKL+K  G+   PG SWI++ N++H FV  D++H   + IY
Sbjct: 893  VLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIY 952

Query: 456  RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
              L+E     +  GY  D + V       E+  +    YHSEKLA+ FG+ +TP+G+ ++
Sbjct: 953  SALKEYYGCFRATGYMPDTNFVL--HDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQ 1010

Query: 516  IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            I+KNLR            S    R +I+RD  R+HHFRDG CSCGDYW
Sbjct: 1011 IIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 196/453 (43%), Gaps = 54/453 (11%)

Query: 8   RYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSL 67
           R + +    +   + G  +LN+Y  + + SL  A   F  +      +W ++I AFAQ  
Sbjct: 384 RPIAIKTGYEGDVVVGSAILNAY--TRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCG 441

Query: 68  SPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
               AI  Y  +   +++     T T  + A  +V  + K + +   ++       VV  
Sbjct: 442 RLDDAIQLYERVPEQTVA-----TKTAMMTAYAQVGRIQKARLIFDEILNPN----VVAW 492

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY-ERMRFEDV 186
             ++ GY  NG+++ A+ +F  MP ++  SW ++I+ + Q     EAL+L  E  R   V
Sbjct: 493 NAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSV 552

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN------ 240
             D  +    LS+CA++G + +G  +H +A + G   + YV N L+ MYAKCGN      
Sbjct: 553 PSDS-SFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSH 611

Query: 241 -------------------------LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
                                    LD A  VF +M KRDV+SW ++I  Y   G G+ A
Sbjct: 612 VFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVA 671

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F  ML  G  P+ +T   LL  C + G ++ G E FH ++ +      +     L+ 
Sbjct: 672 LDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLG-EQFHALIFKLGFDTFLFVGNSLIT 730

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AG 393
           +Y + G  E    V       D + W  +L  C  +    +G+ A+K   Q+E       
Sbjct: 731 MYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNG---LGKEAIKIFEQMEVEGILPD 786

Query: 394 DYVLLATIYACTKD---EEGVARTRKLIKSNGI 423
               L  + AC+     +EG A    + +  GI
Sbjct: 787 QMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGI 819



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 150/328 (45%), Gaps = 10/328 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +S A+ LF+Q+    + +W  +I  +       +A   +  M   +++RPD   F   L 
Sbjct: 311 MSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMC-RTVARPDQSIFVVVLS 369

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A   +  L     L    I++GYE  VVV + ++  Y  NG ++ A   F+ MPER+  S
Sbjct: 370 AITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYS 429

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++I+ + Q     +A++LYER+  + V     T   ++++ A VG +       R+  
Sbjct: 430 WTTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKA----RLIF 481

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +     +V   NA++  Y + G L  A  +F +M  ++  SW +MI G+  +    EA+ 
Sbjct: 482 DEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALE 541

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
              ++  +G  P   +F   L  C++ G VE G    H +  +   +        L+ +Y
Sbjct: 542 LLIELHRSGSVPSDSSFTSALSACANIGDVEIG-RVIHSLAIKTGCQFNSYVMNGLISMY 600

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLL 365
            + G +E    V  T    D V W +L+
Sbjct: 601 AKCGNVEDGSHVFRTIRVKDTVSWNSLI 628



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 109/486 (22%), Positives = 212/486 (43%), Gaps = 92/486 (18%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +FN++      +WNS+I  ++Q+    +A      +L  +    +  T+T  L    
Sbjct: 190 ARRVFNEMIQRDVVSWNSMINGYSQNGKVDEA-----RLLFDAFVGKNIRTWTILLTGYA 244

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +   + + +E    V  S  ER VV    ++ GY  NG ++ AR +FD MPE+++ SWNS
Sbjct: 245 KEGRIEEARE----VFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNS 300

Query: 161 IISCYTQASFHLEALKLYERMRFED-----VGLDGFTLV--------CLLSSCAHVGALN 207
           +++ Y       EA +L+++M   +     V + G+  +          +  C  V   +
Sbjct: 301 VVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPD 360

Query: 208 MGIF------------------LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
             IF                  L  IA + G+   V VG+A+++ Y + G+LD A   F 
Sbjct: 361 QSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFE 420

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFF----------KQMLMAGF------------ 287
            M +R+  SW +MI  +   GR D+AI  +          K  +M  +            
Sbjct: 421 TMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLI 480

Query: 288 -----HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
                +P+ + +  ++ G +  G+++E  + F  M  + +       +  ++  + +  +
Sbjct: 481 FDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNS-----ASWAAMIAGFVQNEE 535

Query: 343 LEKALEVI-----NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
             +ALE++     + S PSD   + + L +C    +VEIG + + +L          YV+
Sbjct: 536 SREALELLIELHRSGSVPSDSS-FTSALSACANIGDVEIGRV-IHSLAIKTGCQFNSYVM 593

Query: 398 --LATIYA-CTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
             L ++YA C   E+G      + ++  +K T  W+ + I      +++D     DA ++
Sbjct: 594 NGLISMYAKCGNVEDG----SHVFRTIRVKDTVSWNSL-ISGLSENYMLD-----DARVV 643

Query: 455 YRKLEE 460
           + K+ +
Sbjct: 644 FEKMPK 649



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G +E AR VF+ M +RD+VSWNS+I+ Y+Q     EA  L++      VG +  T   LL
Sbjct: 185 GRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAF----VGKNIRTWTILL 240

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           +  A  G +       R   E     +V   NA++  Y + G+L +A  +F  M +++V 
Sbjct: 241 TGYAKEGRIEEA----REVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVA 296

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           SWNS++ GY    R  EA   F QM       +S++++ ++ G  H
Sbjct: 297 SWNSVVTGYCHCYRMSEARELFDQMP----ERNSVSWMVMISGYVH 338



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 12/153 (7%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N  +    + G ++ A  VF+ M +RDV+SWNSMI GY  +G+ DEA     ++L   F 
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEA-----RLLFDAFV 229

Query: 289 PDSI-TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
             +I T+  LL G + +G +EE  E F  M  R      +  +  ++  Y + G L+ A 
Sbjct: 230 GKNIRTWTILLTGYAKEGRIEEAREVFESMTER-----NVVSWNAMISGYVQNGDLKNAR 284

Query: 348 EVINTSSPSDPVLWRTLL-GSCKIHRNVEIGEI 379
           ++ +     +   W +++ G C  +R  E  E+
Sbjct: 285 KLFDEMPEKNVASWNSVVTGYCHCYRMSEAREL 317


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/567 (38%), Positives = 319/567 (56%), Gaps = 24/567 (4%)

Query: 6   HARYVGLNKARQAHEIHGEWLLN---SYAISVSSSLSYAQLLFNQIQNPQTQAW-NSLIR 61
           HA  V      QAH      LL           + L+YA+ +F++I +P    W N+L+R
Sbjct: 48  HAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVIWYNTLLR 107

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSR---PDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
            +A+             + +  +     PDT+TF   LKAC   +A  + ++ HG  +++
Sbjct: 108 GYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKA 167

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G      V+  L+  YA  G + AAR +FD M    +VS+N++I+   ++S   EAL L+
Sbjct: 168 GAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLF 227

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             M+ + +     TL+ +LS+CA +GAL +G ++H    +M     V V  AL+DMYAKC
Sbjct: 228 REMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKC 287

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G+L+ A  VF  M  RD  +W+ M+V Y  HG G EAIS F++M   G  PD +TFLG+L
Sbjct: 288 GSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVL 347

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             CSH G+V EG++YF  M   Y +  GIKHYGC+ DL  R+G+LE+A + I+   P  P
Sbjct: 348 YACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFID-ELPIKP 405

Query: 359 --VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
             +LWRTLL +C  H +V++G+   + +++L+ +  GDYV+ + + A T   E +   RK
Sbjct: 406 TAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRK 465

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
           L+   G+   PG S IEI N VH+F   D SHP +    R ++E++ + K +GY  + S 
Sbjct: 466 LMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSH 525

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
           V       E+    S  YHSEKLAI+FGL  T  GT+LRIVKNLR            S+ 
Sbjct: 526 V-FHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMV 584

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++R +I+RD  R+HHF DG+CSCGDYW
Sbjct: 585 FNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/529 (37%), Positives = 312/529 (58%), Gaps = 18/529 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A+ +F+ ++     +W  +I  +A++ +   A   +  M    + +PD  T+   +
Sbjct: 309 SIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGI-QPDRITYMHIM 367

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC     LN  +E+H  V  +G+   ++VST L+  YA  G I+ AR VFD MP RD+V
Sbjct: 368 NACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVV 427

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW+++I  Y +  +  EA + +  M+  ++  DG T + LL++C H+GAL++G+ ++  A
Sbjct: 428 SWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQA 487

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            +   V  V +GNAL+ M AK G+++ A  +F  M +RDV++WN+MI GY +HG   EA+
Sbjct: 488 IKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREAL 547

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F +ML   F P+S+TF+G+L  CS  G V+EG  +F  ++    + P +K YGC+VDL
Sbjct: 548 YLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDL 607

Query: 337 YGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG+L++A E++  S P  P   +W +LL +C+IH N+++ E A +  + ++      
Sbjct: 608 LGRAGELDEA-ELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAV 666

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YV L+ +YA     E VA+ RK+++S GI+   G +WIE+  +VH FVV+D+SHP    I
Sbjct: 667 YVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEI 726

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y +L  +M+  K  GY        V     E   E++ +YHSEKLAIA+G+ + P GT +
Sbjct: 727 YAELARLMNAIKREGYIPITQ--NVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPI 784

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI KNLR            S    R++I RD  R+HHF+DG+CSCGDYW
Sbjct: 785 RIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 168/337 (49%), Gaps = 2/337 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A+ +F+ +       +N ++  +A+S    +A   +  M    L +P+  +F   L
Sbjct: 208 SMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGL-KPNKISFLSIL 266

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
             C   +AL   + +H   + +G    + V+T+L+R Y   G IE AR VFDNM  RD+V
Sbjct: 267 DGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVV 326

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW  +I  Y +     +A  L+  M+ E +  D  T + ++++CA    LN    +H   
Sbjct: 327 SWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQV 386

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              GF   + V  ALV MYAKCG +  A  VF  M +RDV+SW++MI  Y  +G G EA 
Sbjct: 387 DIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAF 446

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F  M  +   PD +T++ LL  C H G ++ G+E +   + + +L   +     L+ +
Sbjct: 447 ETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAI-KADLVSHVPLGNALIIM 505

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRN 373
             + G +E+A  + +T    D + W  ++G   +H N
Sbjct: 506 NAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGN 542



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 172/367 (46%), Gaps = 9/367 (2%)

Query: 8   RYVGLNKARQAHEIHGEWLLNSYAI-------SVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           R   L K  + H I G   LN Y +       S+  +++ A+ +F+ ++N     WN+LI
Sbjct: 71  RDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALI 130

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             +AQ     +A   +  M+   L  P   TF   L AC     LN  +E+H  V+ +G+
Sbjct: 131 AGYAQVGHVKEAFALFRQMVDEGLE-PSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGF 189

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
                + T L+  Y   G ++ AR VFD +  RD+ ++N ++  Y ++    +A +L+ R
Sbjct: 190 VSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYR 249

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M+   +  +  + + +L  C    AL  G  +H      G V+ + V  +L+ MY  CG+
Sbjct: 250 MQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGS 309

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           ++ A  VF  M+ RDV+SW  MI GY  +G  ++A   F  M   G  PD IT++ ++  
Sbjct: 310 IEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNA 369

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           C+    +    E  H  V        +     LV +Y + G ++ A +V +     D V 
Sbjct: 370 CAISANLNHARE-IHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVS 428

Query: 361 WRTLLGS 367
           W  ++G+
Sbjct: 429 WSAMIGA 435



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 1/288 (0%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D+ T+    + C  ++     +++   +I+ G +  +     L++ Y+  G +  AR +F
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D++  + +V+WN++I+ Y Q     EA  L+ +M  E +     T + +L +C+    LN
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLN 175

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  +H      GFV    +G ALV MY K G++D A  VF  +  RDV ++N M+ GY 
Sbjct: 176 WGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYA 235

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
             G  ++A   F +M   G  P+ I+FL +L GC     +  G +  H       L   I
Sbjct: 236 KSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWG-KAVHAQCMNAGLVDDI 294

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
           +    L+ +Y   G +E A  V +     D V W  ++     + N+E
Sbjct: 295 RVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIE 342



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 1/179 (0%)

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
           +D  T V L   C  +    +G  +     + G   ++Y  N L+ +Y+ CGN+  A  +
Sbjct: 55  IDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQI 114

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F  +  + V++WN++I GY   G   EA + F+QM+  G  P  ITFL +L  CS    +
Sbjct: 115 FDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGL 174

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
             G E  H  V         +    LV +Y + G ++ A +V +     D   +  ++G
Sbjct: 175 NWGKE-VHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVG 232


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/546 (39%), Positives = 323/546 (59%), Gaps = 45/546 (8%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMASLSRPDTFTFTF 94
           S ++YA  +F+ I+N  +  WN+LIRA A  +S   +A   Y  ML    S PD  TF F
Sbjct: 78  SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPF 137

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            LKAC  +  L++ +++H  +++ G+   V V+  L+  Y + G ++ AR VFD MPER 
Sbjct: 138 VLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERS 197

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMR--FEDVGLDGFTLVCLLSSCAHVGALNMG--- 209
           LVSWNS+I    +   +  AL+L+  M+  FE    DG+T+  +LS+CA +G+L++G   
Sbjct: 198 LVSWNSMIDALVRVGEYDSALQLFRDMQKSFEP---DGYTMQSVLSACAGLGSLSLGTWS 254

Query: 210 -IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
            +FL R  C++     V + N+L++MY KCG+L  A  VF  MRK D+ SWN+MI+G+  
Sbjct: 255 HVFLLR-NCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFAT 313

Query: 269 HGRGDEAISFFKQMLMAG--FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
           HG+ +EA++ F  M+  G    P+S+TF+ LL  C+H+G+V +G +YF MMV  Y ++P 
Sbjct: 314 HGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPA 373

Query: 327 IKHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGS-CKIHRNVEIGEIAMKNL 384
           ++HYGC++DL  RAG + +A++ V++     D V+WR+LL + CK   +VE+ E   +N+
Sbjct: 374 LEHYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNI 433

Query: 385 V-------QLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
           +          +  +G YVLL+ +YA       V   RKL+  +GI+  PG S IEI   
Sbjct: 434 IGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGI 493

Query: 438 VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSE 497
            ++F   D SHP    IY++L+ I  R +        S+V  +  SS+++   S   HSE
Sbjct: 494 SNEFFAGDTSHPQTKQIYQQLKVIDDRLR--------SIVDATNDSSKEY---SLRLHSE 542

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           +LAIAFGL + P  T +RI KNLR            S  ++ ++IVRDRVR+HHF+DG C
Sbjct: 543 RLAIAFGLISLPPQTPIRIFKNLRVCSDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSC 602

Query: 546 SCGDYW 551
           SC DYW
Sbjct: 603 SCLDYW 608


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/547 (37%), Positives = 311/547 (56%), Gaps = 34/547 (6%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           +S+ YA  +F+  QNP    + +LI     S      I  Y  M+ +SL  PD++  T  
Sbjct: 78  NSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLV-PDSYAVTSV 136

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LKAC    AL + +E+H  V++ G      +   L+  Y   G  E AR VFD MPERD+
Sbjct: 137 LKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDV 196

Query: 156 VS------------------WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           V+                  W ++I    +      AL+++  M+ EDV  +  T+VC+L
Sbjct: 197 VASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVL 256

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           S+C+ +GAL +G ++     +     + +VG AL++MY++CG++D A  VF +M++++V+
Sbjct: 257 SACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVI 316

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           ++NSMI+G+ +HG+  EA+  F+ ++  GF P S+TF+G+L  CSH GL E G E FH M
Sbjct: 317 TYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSM 376

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEI 376
              Y ++P I+HYGC+VDL GR G+LE+A   I       D V+   LL +CKIH N+E+
Sbjct: 377 AKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLEL 436

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
            E   K+LV  + A +G Y+LL+  Y+ +   +  A  R  ++  GI+  PG S IE+ N
Sbjct: 437 AERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNN 496

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHS 496
           ++H+F++ D  HP  + IY+KLEE+    +  GYT    +V      SE   E + A HS
Sbjct: 497 EIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEK--EWALAIHS 554

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           E+LAI +GL +T   T+LR+VKNLR            S    R ++VRDR R+HHF +G+
Sbjct: 555 ERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGV 614

Query: 545 CSCGDYW 551
           CSCGDYW
Sbjct: 615 CSCGDYW 621



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/335 (20%), Positives = 150/335 (44%), Gaps = 29/335 (8%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           F   L+ C   K  N+   ++  +IR+ + +   V   L+R  +    I  A  +F +  
Sbjct: 35  FISLLQNC---KHNNQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQ 91

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
             ++  + ++I     + ++ + + LY +M    +  D + +  +L +C    AL  G  
Sbjct: 92  NPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGRE 151

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS------------- 258
           +H    ++G   +  +   L+++Y KCG  + A  VF  M +RDV++             
Sbjct: 152 VHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGI 211

Query: 259 -----WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
                W +MI G   +G  + A+  F+ M      P+ +T + +L  CS  G ++ G  +
Sbjct: 212 KDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLG-RW 270

Query: 314 FHMMVSRYNLKPGIKHY--GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
               + ++ ++  + H+  G L+++Y R G +++A  V       + + + +++    +H
Sbjct: 271 VRSYMDKHRIE--LNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALH 328

Query: 372 -RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
            ++VE  E+  + L++ +  +      +  + AC+
Sbjct: 329 GKSVEAVEL-FRGLIK-QGFTPSSVTFVGVLNACS 361


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/567 (35%), Positives = 326/567 (57%), Gaps = 33/567 (5%)

Query: 14  KARQAHEIHGEWLLNSYAISVS------------SSLSYAQLLFNQIQNPQTQAWNSLIR 61
           + +Q  ++H   ++ SY  S S             +++Y  LLF  +  P    +NS+I+
Sbjct: 21  RVKQLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIK 80

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
           + ++   PL  + YY  ML +++S P  +TFT  +K+C  + AL   + +H   + SG+ 
Sbjct: 81  STSKLRLPLHCVAYYRRMLSSNVS-PSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFG 139

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
               V   L+  Y+  G +EAAR VFD MPE+ +V+WNS++S + Q     +A++++ +M
Sbjct: 140 LDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQM 199

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           R      D  T V LLS+CA  GA+++G ++H+     G   +V +G AL+++Y++CG++
Sbjct: 200 RESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDV 259

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCG 300
             A  VF +M++ +V +W +MI  YG HG G +A+  F +M    G  P+++TF+ +L  
Sbjct: 260 GKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSA 319

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN----TSSPS 356
           C+H GLVE+G   +  M   Y L PG++H+ C+VD+ GRAG L++A   I     T + +
Sbjct: 320 CAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNAT 379

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
            P LW  +LG+CK+HRN ++G    K L+ LE  + G +V+L+ IYA +   + V+  R 
Sbjct: 380 APALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSHIRD 439

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
            +  N ++   G+S IE+ N+ + F + D+SH +   IYR LE ++ R K IGY      
Sbjct: 440 RMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSE- 498

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
             V     E+  E +  YHSEKLA+AFGL  T D +++ +VKNLR            SI 
Sbjct: 499 -EVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-SAITVVKNLRICEDCHSAFKYISIV 556

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +R +IVRD++R+HHF++G CSC DYW
Sbjct: 557 SNRQIIVRDKLRFHHFQNGSCSCLDYW 583


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/533 (38%), Positives = 311/533 (58%), Gaps = 26/533 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L+ A+ +F+ I +    +WN+LI   AQ+  P +A+     M  +   +PD FT +  L
Sbjct: 400 ALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSG-QQPDWFTISSLL 458

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  +K+L   +E+HG+V+R+G E    V T+L+  Y   G   +AR +FD M +++LV
Sbjct: 459 LACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLV 518

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++IS Y+Q     E+L L+ +   E +      +V +  +C+ + AL +G   H   
Sbjct: 519 SWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYV 578

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            +    E  +VG +++DMYAK G +  +  VF  ++ ++V SWN++IV +G+HG G EAI
Sbjct: 579 LKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAI 638

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             +++M   G  PD  T++G+L  C H GLVEEG++YF  M +   ++P ++HY CL+D+
Sbjct: 639 ELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDM 698

Query: 337 YGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
             RAG+L+ AL ++N     +D  +W +LL SC+    +EIGE   K L++LE   A +Y
Sbjct: 699 LARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENY 758

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP---DAD 452
           VLL+ +YA     +GV R R+++K  G++   G SWIE+G +V+ FVV D   P   +  
Sbjct: 759 VLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIR 818

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
           +I+R+LEE   R   IGY  + S V   V      D L      HSEKLAI+FGL  T  
Sbjct: 819 VIWRRLEE---RISEIGYKPNTSSVLHEVGEEEKIDILRG----HSEKLAISFGLLKTTK 871

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           GT+LRI KNLR            S A  R+++VRD  R+HHFRDGLCSC DYW
Sbjct: 872 GTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 167/329 (50%), Gaps = 5/329 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           ++L+F+ ++      WN+L+  + ++      +  +  ++  +  +PD FTF   +KAC 
Sbjct: 98  SRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACG 157

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +  +   + +HG VI+ G    V V   L+  Y   G ++ A  VFD MPE +LVSWNS
Sbjct: 158 GILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNS 217

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           +I  +++  F  ++  L   M  E+  L D  T+V +L  CA  G +++G+ +H +A ++
Sbjct: 218 MICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKL 277

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G  E V V NA+V MY+KCG L+ A   F +   ++V+SWN+MI  + + G  +EA +  
Sbjct: 278 GLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLL 337

Query: 280 KQMLMAG--FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
           ++M + G     + +T L +L  C  + L    ++  H    R+  +  ++     +  Y
Sbjct: 338 QEMQIQGEEMKANEVTILNVLPACLDK-LQLRSLKELHGYSFRHCFQH-VELSNAFILAY 395

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            + G L  A +V +         W  L+G
Sbjct: 396 AKCGALNSAEKVFHGIGDKTVSSWNALIG 424



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 162/313 (51%), Gaps = 5/313 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSG-YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           L+AC   K +   + LH FV  S  Y    V++T L++ YA  G    +R VFDNM  ++
Sbjct: 50  LQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKN 109

Query: 155 LVSWNSIISCYTQASFHLEALKLY-ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           L+ WN+++S YT+   + + +K++ + +   D   D FT   ++ +C  +  + +G  +H
Sbjct: 110 LIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIH 169

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            +  +MG V  V+VGNALV MY KCG +D A  VF  M + +++SWNSMI  +  +G   
Sbjct: 170 GMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSR 229

Query: 274 EAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           ++     +ML   G  PD +T + +L  C+ +G V+ G+   H +  +  L   +     
Sbjct: 230 DSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMG-IHGLAVKLGLSEEVMVNNA 288

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNV-EIGEIAMKNLVQLEAAS 391
           +V +Y + G L +A      ++  + V W T++ +  +  +V E   +  +  +Q E   
Sbjct: 289 MVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMK 348

Query: 392 AGDYVLLATIYAC 404
           A +  +L  + AC
Sbjct: 349 ANEVTILNVLPAC 361



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 161/344 (46%), Gaps = 5/344 (1%)

Query: 30  YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM-LMASLSRPD 88
           Y  S    L+ AQ+ F +  N    +WN++I AF+      +A      M +     + +
Sbjct: 291 YMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKAN 350

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
             T    L AC     L   +ELHG+  R  ++  V +S   +  YA  G + +A  VF 
Sbjct: 351 EVTILNVLPACLDKLQLRSLKELHGYSFRHCFQH-VELSNAFILAYAKCGALNSAEKVFH 409

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            + ++ + SWN++I  + Q     +AL L  +M +     D FT+  LL +CAH+ +L  
Sbjct: 410 GIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQY 469

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G  +H      G     +VG +L+  Y  CG   SA  +F RM+ ++++SWN+MI GY  
Sbjct: 470 GKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQ 529

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +G   E+++ F++ L  G     I  + +   CS    +  G E    ++     +    
Sbjct: 530 NGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAF- 588

Query: 329 HYGC-LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
             GC ++D+Y ++G ++++ +V +     +   W  ++ +  IH
Sbjct: 589 -VGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIH 631


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/545 (37%), Positives = 304/545 (55%), Gaps = 28/545 (5%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA      L  A+ +FNQ++     +WNSL+ AF Q+  P+ A+  YN M    + 
Sbjct: 281 LINMYA--KFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVV 338

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC-----VVVSTNLMRGYAANGVI 140
            PD  T          +      + +HGFV R    RC     + +   ++  YA  G I
Sbjct: 339 -PDLLTLVSLASVAAELGNFLSSRSIHGFVTR----RCWFLHDIALGNAIIDMYAKLGFI 393

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL-DGFTLVCLLSS 199
           ++AR VF+ +P +D++SWNS+I+ Y+Q     EA+ +Y  MR+    + +  T V +L++
Sbjct: 394 DSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTA 453

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
            + +GAL  G+  H    +      ++V   LVDMY KCG L  A  +F  +  +  +SW
Sbjct: 454 HSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSW 513

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           N++I  +G+HG G +A+  FK+M   G  PD ITF+ LL  CSH GLV+EG   F +M  
Sbjct: 514 NAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQE 573

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
            Y ++P +KHYGC+VDL+GRAG LEKA   + N     D  +W  LLG+C+IH NVE+  
Sbjct: 574 TYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVR 633

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
               +L+++E+ + G YVLL+ IYA     EGV   R L +  G+K TPGWS IE+  ++
Sbjct: 634 TVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKI 693

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
             F   +++HP  + IY +L  +  + K IGY  D + V       E   E     HSE+
Sbjct: 694 DVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEK--ENILTSHSER 751

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LA+AFG+ +TP  T+L+I KNLR            S    R++IVRD  R+HHF+DG+CS
Sbjct: 752 LAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCS 811

Query: 547 CGDYW 551
           CGDYW
Sbjct: 812 CGDYW 816



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 177/340 (52%), Gaps = 5/340 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA      + +A+L F+QIQ      WNS+I A+A+      A+  +N  L  S  
Sbjct: 81  LINRYAFL--GDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFL 138

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           + D +TF   ++AC     L+  +++H  V++ G+E  V ++ + +  Y+  G +  A +
Sbjct: 139 QSDHYTFPPVIRACGN---LDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACN 195

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FDNM  RD+ +WN++IS +       EAL++++ MRF+ V +D  T+  LL  C  +  
Sbjct: 196 LFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDD 255

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           +  G+ +H  A ++G    ++V NAL++MYAK G L SA  +F++M+ RD++SWNS++  
Sbjct: 256 IISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAA 315

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           +  + +   A+  + +M   G  PD +T + L    +  G           +  R     
Sbjct: 316 FEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLH 375

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            I     ++D+Y + G ++ A +V       D + W +L+
Sbjct: 376 DIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLI 415



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 132/264 (50%), Gaps = 13/264 (4%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ- 167
           ++LH  ++ SG  + + +S  L+  YA  G I  AR  FD +  +D+ +WNS+IS Y + 
Sbjct: 60  KQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARI 119

Query: 168 ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227
             FH       E +    +  D +T   ++ +C   G L+ G  +H +  ++GF   VY+
Sbjct: 120 GHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLVLKLGFECDVYI 176

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
             + +  Y++ G +  A  +F  M  RD+ +WN+MI G+ ++G+  EA+  F +M     
Sbjct: 177 AASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSV 236

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH--YGC--LVDLYGRAGKL 343
             DS+T   LL  C     +  GV     ++  Y +K G++   + C  L+++Y + G+L
Sbjct: 237 SMDSVTISSLLPICVQLDDIISGV-----LIHVYAIKLGLEFDLFVCNALINMYAKFGEL 291

Query: 344 EKALEVINTSSPSDPVLWRTLLGS 367
             A  + N     D V W +LL +
Sbjct: 292 RSAETIFNQMKVRDIVSWNSLLAA 315


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/571 (37%), Positives = 324/571 (56%), Gaps = 29/571 (5%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
            L+ HA+++     R   +     L    A S S  L+YA+LL N   +  +  +N++IR
Sbjct: 4   ALQLHAQFIKSQNQRNFSK-----LFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIR 58

Query: 62  AFAQSLSP---LQAIFYYNHMLM--ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
           A++ + +P    QA+  +  ML    ++ +PDTFT++F LK+C R+K   + ++LHGF+ 
Sbjct: 59  AYSHTSNPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKSCGRLKLTQQAKQLHGFIN 118

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
           + G+   + +   L+  Y+  G +  AR VFD M  RD+VSW S+I+ +      +EA++
Sbjct: 119 KMGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQ 178

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           L++RM    V ++  T++ +L  CA  GAL++G  +H I  E G      V  AL+ MY+
Sbjct: 179 LFQRMLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYS 238

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           KCG L+SA  VF  +  RDV  W +MI G   HG   EAI  F +M      PD  T + 
Sbjct: 239 KCGCLESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMV 298

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSP 355
           +L    + GLV EG  +F+ +  RY++KP IKH+GC+VDL  + G LE+A + IN     
Sbjct: 299 VLSAYRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMK 358

Query: 356 SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA---GDYVLLATIYACTKDEEGVA 412
            D V+WRTL+ +CK+H + E  E  MK+L +L+  SA   G Y+L + +YA T      A
Sbjct: 359 PDAVIWRTLIWACKVHADTERAERLMKHL-ELQGMSAHDSGSYILASNVYASTGKWCDKA 417

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
             R+L+   G+   PG S IE+   VH+FV+ D  HPD + I+ KL++++ + +  GY  
Sbjct: 418 EVRELMNKKGLVKPPGSSRIEVDGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNP 477

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSI--------- 523
             S V +     E  ++    +HSEKLA+A+GL  T  G+ +RIVKNLRS          
Sbjct: 478 KVSEVMLEMDDEEKAIQ--LLHHSEKLALAYGLIRTCPGSKIRIVKNLRSCEDCHEFMKL 535

Query: 524 ---AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               Y RD+IVRDR+R+HHF++G CSC DYW
Sbjct: 536 ISKVYQRDIIVRDRIRFHHFKNGDCSCKDYW 566


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/534 (37%), Positives = 298/534 (55%), Gaps = 53/534 (9%)

Query: 33  SVSSSLSYAQLLFNQI--QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           + + S  YAQ +F  +  Q P+T  WNS ++A A+  SP+ AI  +  +    +  PDTF
Sbjct: 104 AFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC-PDTF 162

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T +  L+AC  +  L+  + LHG V + G+                              
Sbjct: 163 TCSSVLRACLNLLDLSNGRILHGVVEKVGFR----------------------------- 193

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
                 SW S+I+ Y Q     EA+ L+ +M    V  +  T+V +L++CA +GAL++G+
Sbjct: 194 ------SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGM 247

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H  +   GF  +V + N L+DMY KCG L+ A  VF  M +R V+SW++MI G  +HG
Sbjct: 248 RIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHG 307

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
           R +EA+  F  M   G  P+ +TF+GLL  CSH GL+ EG  +F  M   Y + P I+HY
Sbjct: 308 RAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHY 367

Query: 331 GCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
           GC+VDL  RAG L +A E ++N     + V+W  LLG+C++H+NVE+ E A+K+L++L+ 
Sbjct: 368 GCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDP 427

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
            + G YV+L+ IYA     E  AR RK +K   +K TPGWS I +   VH+FV  ++SHP
Sbjct: 428 LNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHP 487

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
           D + I+++ EE++   +  GY  + S+V +     E    K  + HSEKLA+ FGL  TP
Sbjct: 488 DTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKV--KFVSRHSEKLALVFGLMNTP 545

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             T +RI+KNLR            S   +R+++VRDR R+H F D  CSC DYW
Sbjct: 546 AETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/554 (38%), Positives = 317/554 (57%), Gaps = 27/554 (4%)

Query: 18   AHEIHGEWLLNSYAISVSSSLSYAQLLFNQI--QNPQTQ-AWNSLIRAFAQSLSPLQAIF 74
            +H +  + LL   A   +  L YA  + +++    P      N+++R  A S  P  A+ 
Sbjct: 734  SHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPFPLNTVLRIAAGSPRPRVALE 793

Query: 75   YYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGY 134
             +       L+ PDT T+   ++AC R+ AL + + LH    ++G+   V V  +L+  Y
Sbjct: 794  LHRR----RLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLY 849

Query: 135  AANGVIEAARSVFDNMPER--DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192
             A G+ E+A  VFD MP R  +LVSWNS+++ +       E L ++  M   D   DGFT
Sbjct: 850  GACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFT 909

Query: 193  LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM- 251
            +V +L++CA  GAL +G  +H    ++G VE+ +V NAL+D+YAKCG+++ A  +F  M 
Sbjct: 910  IVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMG 969

Query: 252  RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
              R V+SW S+IVG   +G G EA+  F  M      P  IT +G+L  CSH GLV++G 
Sbjct: 970  LGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGF 1029

Query: 312  EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCK 369
             YF  M   Y + P I+H GC+VDL GRAG++E+A + I T  P +P  V+WRTLLGSC 
Sbjct: 1030 RYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITM-PLEPNAVVWRTLLGSCA 1088

Query: 370  IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
            +H+ +E+G++A + LV+L+   +GDYVLL+ +YA       V   RK +  + ++  PG 
Sbjct: 1089 MHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGH 1148

Query: 430  SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
            S +E+ N V++FV+ D+SHP+++ IY  L EI  R +  GY    S V       E   E
Sbjct: 1149 SLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEK--E 1206

Query: 490  KSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRY 537
             +  YHSE+LAIAF L  +  G  +RI+KNLR            S  Y R++IVRDR R+
Sbjct: 1207 TALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRF 1266

Query: 538  HHFRDGLCSCGDYW 551
            HHF+ G CSC DYW
Sbjct: 1267 HHFQGGACSCKDYW 1280


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/522 (40%), Positives = 300/522 (57%), Gaps = 25/522 (4%)

Query: 48  IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNK 107
           + +P T +W +LI A+  +   L+AI        AS  RPD+FT    L AC RV  L  
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAF-ASGMRPDSFTAVRVLTACARVADLET 59

Query: 108 CQELHGFVIRS-GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
            + +     +  G    V V+T  +  Y   G +E ARSVFD M  RD V+W +++  Y 
Sbjct: 60  GEAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYA 119

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
                 EAL L+  M+ E    D +T+V  LS+C  +GAL++G    R A  M   + V 
Sbjct: 120 SNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLG----RQAVGMVHWDEVL 175

Query: 227 ----VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
               +G AL+DMYAKCG+   A+ VF +M +RD++ WN+MI+G G+ G    A +   QM
Sbjct: 176 GNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQM 235

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
             +G   +  TF+GLLC C+H GLV +G +YFH M   Y + P I+HYGC+VDL+ RAG 
Sbjct: 236 KKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGL 295

Query: 343 LEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           LE+A ++I +    ++ V+W  LLG CKIHRN ++ E A+K L++LE  ++G+YV+L+ I
Sbjct: 296 LEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNI 355

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           Y+ +   E  A+ R  +K+ GI+  P  SW+E+  +VHKF V D SHP +D IY KL+E+
Sbjct: 356 YSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDEL 415

Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
               K +GY     +V     + E   E +  +HSEK+AIAF L TT  G ++R+ KNLR
Sbjct: 416 GMEMKAMGYEPTTEVVMFDVENEEK--ENTLVHHSEKIAIAFSLITTEPGETIRVTKNLR 473

Query: 522 ------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                       S    R+++VRD  R+H FRDG CSC DYW
Sbjct: 474 VCTDCHSAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/533 (38%), Positives = 306/533 (57%), Gaps = 27/533 (5%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+ + + +   WN++I  +AQ+    +A+  +  M  ++    ++ T    + AC R  
Sbjct: 356 VFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSG 415

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           A +K + +HGFV++ G +R   V   LM  Y+  G I+ A+ +F  M +RDLV+WN+II+
Sbjct: 416 AFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIIT 475

Query: 164 CYTQASFHLEALKLYERM---------RFEDVGL--DGFTLVCLLSSCAHVGALNMGIFL 212
            Y  +  H +AL +  +M         R   V L  +  TL+ +L SCA + AL  G  +
Sbjct: 476 GYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEI 535

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H  A +      V VG+ALVDMYAKCG L  +  VF ++  R+V++WN +++ YG+HG  
Sbjct: 536 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNS 595

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            +AI   + M++ G  P+ +TF+ +   CSH G+V EG++ F+ M   Y ++P   HY C
Sbjct: 596 QDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYAC 655

Query: 333 LVDLYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           +VDL GRAG++++A ++IN    +      W +LLG+C+IH N+EIGEIA +NL+QLE  
Sbjct: 656 VVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPN 715

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
            A  YVLLA IY+           R+ +K+ G++  PG SWIE G++VHKFV  D SHP 
Sbjct: 716 VASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQ 775

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
           ++ +   LE +  R +  GY  D S V    +  ED  E     HSEKLAIAFG+  T  
Sbjct: 776 SEKLRGYLETLWERMRKEGYIPDTSCVL--HNVEEDEKEILLCGHSEKLAIAFGILNTSP 833

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           GT +R+ KNLR            S    R++I+RD  R+HHF++G CSCGDYW
Sbjct: 834 GTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 157/327 (48%), Gaps = 8/327 (2%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV- 102
           +F++I      +WNSLI +         A+  +  ML   +  P +FT      AC    
Sbjct: 151 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDV-EPSSFTLVSVALACSNFP 209

Query: 103 --KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             + L   +++H + +R G     +++T L+  Y   G + +++ +  +   RDLV+WN+
Sbjct: 210 MPEGLLMGKQVHAYGLRKGELNSFIINT-LVAMYGKMGKLASSKVLLGSFEGRDLVTWNT 268

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++S   Q    LEAL+    M  E V  DGFT+  +L +C+H+  L  G  LH  A + G
Sbjct: 269 VLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNG 328

Query: 221 FV-ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
            + E+ +VG+ALVDMY  C  + S   VF  M  R +  WN+MI GY  +   +EA+  F
Sbjct: 329 SLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLF 388

Query: 280 KQM-LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
            +M   AG   +S T  G++  C   G   +  E  H  V +  L         L+D+Y 
Sbjct: 389 IEMEESAGLLANSTTMAGVVPACVRSGAFSKK-EAIHGFVVKRGLDRDRFVQNALMDMYS 447

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL 365
           R GK++ A  +       D V W T++
Sbjct: 448 RLGKIDIAKRIFGKMEDRDLVTWNTII 474



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 181/404 (44%), Gaps = 23/404 (5%)

Query: 15  ARQAHEIHGEWLLNSYAISVSSSLSYA-----QLLFNQIQNPQTQAWNSLIRAFAQSLSP 69
           +RQ H     +LL +   SV+  ++           +Q  +P+   W  L+R+  +S   
Sbjct: 21  SRQKHP----YLLRATPTSVTDDVASTVYGAPSKFISQSHSPEW--WIDLLRSKVRSNLL 74

Query: 70  LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE-RCVVVST 128
            +A+  Y  M++  + +PD F F   LKA   ++ ++  +++H  V + GY    V V+ 
Sbjct: 75  REAVLTYIDMIVLGI-KPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVAN 133

Query: 129 NLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188
            L+  Y   G   A   VFD + ER+ VSWNS+IS          AL+ +  M  EDV  
Sbjct: 134 TLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEP 193

Query: 189 DGFTLVCLLSSCAHVG---ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
             FTLV +  +C++      L MG  +H      G + S ++ N LV MY K G L S+ 
Sbjct: 194 SSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNS-FIINTLVAMYGKMGKLASSK 252

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            +      RD+++WN+++     + +  EA+ + ++M++ G  PD  T   +L  CSH  
Sbjct: 253 VLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLE 312

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           ++  G E     +   +L         LVD+Y    ++     V +        LW  ++
Sbjct: 313 MLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMI 372

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLLATIYACTK 406
                +   E  E A+   +++E ++   A    +   + AC +
Sbjct: 373 TG---YAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVR 413



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 133/273 (48%), Gaps = 11/273 (4%)

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W  ++    +++   EA+  Y  M    +  D F    LL + A +  +++G  +H    
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 218 EMGF-VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
           + G+ V+SV V N LV++Y KCG+  + + VF R+ +R+ +SWNS+I       + + A+
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH---YGCL 333
             F+ ML     P S T + +   CS+  +  EG+      V  Y L+ G  +      L
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPM-PEGL-LMGKQVHAYGLRKGELNSFIINTL 238

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS-CKIHRNVEIGEIAMKNLVQLEAASA 392
           V +YG+ GKL  +  ++ +    D V W T+L S C+  + +E  E  ++ +V LE    
Sbjct: 239 VAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEY-LREMV-LEGVEP 296

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
             + + + + AC+  E  + RT K + +  +K 
Sbjct: 297 DGFTISSVLPACSHLE--MLRTGKELHAYALKN 327


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/546 (38%), Positives = 313/546 (57%), Gaps = 37/546 (6%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
            +L+F+ + + +   WN++I  +AQS    +A+  +  M  A+    +  T +  + A  
Sbjct: 271 GRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYV 330

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R + +++ + +HG+VI+ G E    +   L+  Y+  G I+ ++ +FD+M +RD+VSWN+
Sbjct: 331 RCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNT 390

Query: 161 IISCYTQASFHLEALKL-YERMRFEDVGL-DG--------------FTLVCLLSSCAHVG 204
           II+ Y       +AL L +E  R E+    DG               TL+ +L  CA + 
Sbjct: 391 IITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLS 450

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL  G  +H  A        V VG+ALVDMYAKCG L+ A  VF +M  R+V++WN +I+
Sbjct: 451 ALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIM 510

Query: 265 GYGVHGRGDEAISFFKQMLMAG-----FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
            YG+HG+G E++  F+ M+  G       P  +TF+ L   CSH G+V+EG+  FH M +
Sbjct: 511 AYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKN 570

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPV-LWRTLLGSCKIHRNVEIG 377
            + ++P   HY C+VDL GRAGK+E+A  ++NT  S  D V  W +LLG+C+I+ N+EIG
Sbjct: 571 EHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIG 630

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
           EIA +NL+QL+   A  YVLL+ IY+     +     R+ +K+ G+K  PG SWIE G++
Sbjct: 631 EIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDE 690

Query: 438 VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSE 497
           VHKF+  D SHP ++ ++  LE +  R K  GY  D + V       E   E     HSE
Sbjct: 691 VHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEK--ETILCGHSE 748

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLAIAFG+  TP GT++R+ KNLR            S    R++I+RD  R+HHF+DG C
Sbjct: 749 KLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTC 808

Query: 546 SCGDYW 551
           SCGDYW
Sbjct: 809 SCGDYW 814



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 174/366 (47%), Gaps = 12/366 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F++I      +WNS+I A  +      AI  +  MLM     P +FT      
Sbjct: 63  LGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGF-EPSSFTLVSMAL 121

Query: 98  ACERVKALNKC---QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           AC  ++  +     +++HG   R G+ R    +  LM  YA  G ++ A+S+     +RD
Sbjct: 122 ACSNLRKRDGLWLGKQIHGCCFRKGHWR-TFSNNALMAMYAKLGRLDDAKSLLVLFEDRD 180

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           LV+WNS+IS ++Q    +EAL     M  E V  DG T   +L +C+H+  L  G  +H 
Sbjct: 181 LVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHA 240

Query: 215 IACEM-GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            A      +E+ +VG+ALVDMY  CG ++S   VF  +  R +  WN+MI GY      +
Sbjct: 241 YALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDE 300

Query: 274 EAISFFKQM-LMAGFHPDSITFLGLLCGCSH-QGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           +A+  F +M   AG + ++ T   ++      +G+  +  E  H  V +  L+       
Sbjct: 301 KALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRK--EGIHGYVIKRGLETNRYLQN 358

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
            L+D+Y R G ++ +  + ++    D V W T++ S  I        + +  + ++E  S
Sbjct: 359 ALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKS 418

Query: 392 A--GDY 395
              GDY
Sbjct: 419 TYDGDY 424



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 156/334 (46%), Gaps = 11/334 (3%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER--CVVVSTNLMRGYAANGVIEAAR 144
           PD F F   LKA   ++ L   +++H  V + GY     V +   L+  Y   G +  A 
Sbjct: 8   PDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAY 67

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV- 203
            VFD + ERD VSWNSIIS   +      A+K +  M  E      FTLV +  +C+++ 
Sbjct: 68  KVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLR 127

Query: 204 --GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
               L +G  +H      G   + +  NAL+ MYAK G LD A  +      RD+++WNS
Sbjct: 128 KRDGLWLGKQIHGCCFRKGHWRT-FSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNS 186

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI  +  + R  EA+ F + M++ G  PD +TF  +L  CSH  L+  G E     +   
Sbjct: 187 MISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTD 246

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           ++         LVD+Y   G++E    V ++       LW  ++     +   E  E A+
Sbjct: 247 DVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAG---YAQSEHDEKAL 303

Query: 382 KNLVQLEAASA--GDYVLLATIYACTKDEEGVAR 413
              +++EAA+    +   +++I       EG++R
Sbjct: 304 MLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISR 337



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 34/254 (13%)

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF--VESVYVGNALVDMYAKCGNLDSAFC 246
           D F    +L + A +  L +G  +H    + G+    SV + N LV+MY KCG L  A+ 
Sbjct: 9   DNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYK 68

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF R+ +RD +SWNS+I         + AI  F+ MLM GF P S T + +   CS+   
Sbjct: 69  VFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSN--- 125

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGC--------------LVDLYGRAGKLEKALEVINT 352
                     +  R  L  G + +GC              L+ +Y + G+L+ A  ++  
Sbjct: 126 ----------LRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVL 175

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAM-KNLVQLEAASAGDYVLLATIYACTKDEEGV 411
               D V W +++ S    +N    E  M   L+ LE          + + AC+  +  +
Sbjct: 176 FEDRDLVTWNSMISS--FSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLD--L 231

Query: 412 ARTRKLIKSNGIKT 425
            RT K I +  ++T
Sbjct: 232 LRTGKEIHAYALRT 245


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/584 (37%), Positives = 317/584 (54%), Gaps = 50/584 (8%)

Query: 15  ARQAHEIHGEWLLNSYAISV------------SSSLSYAQLLFNQIQNPQTQAWNSLIRA 62
           AR   EIHG  + N     V              SL  A+LLF+++      +W+++IRA
Sbjct: 125 ARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRA 184

Query: 63  FAQSLSPL--QAIFYYNHMLMASLS-------------------RPDTFTFTFTLKACER 101
           +         ++I  +  M+   +                     P+  T    + +C  
Sbjct: 185 YITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGF 244

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161
           V A+   + LH +++R+G+   + ++T L+  Y   G I +AR++FD+M  +D+++W ++
Sbjct: 245 VGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAM 304

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           IS Y QA+    A +L+ +MR   V  +  T+V LLS CA  GAL+MG + H    + G 
Sbjct: 305 ISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGV 364

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
              V +  AL+DMYAKCG++  A  +FS    RD+ +WN M+ GYG+HG G++A+  F +
Sbjct: 365 EVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTE 424

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           M   G  P+ ITF+G L  CSH GLV EG   F  M+  + L P ++HYGC+VDL GRAG
Sbjct: 425 METLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAG 484

Query: 342 KLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            L++A ++I  S P  P   +W  +L +CKIH+N  +GE+A + L+ LE  + G  VL++
Sbjct: 485 LLDEAYKMIE-SMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMS 543

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            IYA       VA  RK +K  GIK  PG S IE+   VH F + D +HP  + I   L 
Sbjct: 544 NIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLA 603

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           E+  + K  GY  D S+V  +    E   E +  YHSEKLA+AFGL +T  GT +R+VKN
Sbjct: 604 EMSKKLKEAGYLPDTSVVLHNIDEEEK--ETALNYHSEKLAMAFGLISTAPGTPIRVVKN 661

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S  Y R +IVRDR R+HHFR+G CSCG YW
Sbjct: 662 LRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 172/361 (47%), Gaps = 29/361 (8%)

Query: 69  PLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVST 128
           P  A+  Y +M    +   D+F     LKAC ++      +E+HGF +++G    V V  
Sbjct: 90  PRYALNTYTYMRKLDIEV-DSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVN 148

Query: 129 NLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL---------------- 172
            LM+ Y+  G + +AR +FD M ERD+VSW+++I  Y    +                  
Sbjct: 149 ALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYI 208

Query: 173 ------EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
                 E  +L+ RM  E+V  +  T++ L+ SC  VGA+ +G  LH      GF  S+ 
Sbjct: 209 RCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLA 268

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           +  ALVDMY KCG + SA  +F  M+ +DV++W +MI  Y      D A   F QM   G
Sbjct: 269 LATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNG 328

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
             P+ +T + LL  C+  G ++ G ++FH  + +  ++  +     L+D+Y + G +  A
Sbjct: 329 VRPNELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGA 387

Query: 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYAC 404
             + + +   D   W  ++    +H     GE A+K   ++E       D   +  ++AC
Sbjct: 388 QRLFSEAIDRDICTWNVMMAGYGMH---GYGEKALKLFTEMETLGVKPNDITFIGALHAC 444

Query: 405 T 405
           +
Sbjct: 445 S 445


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/527 (38%), Positives = 303/527 (57%), Gaps = 21/527 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF++++ P    +N+LI  ++ +     ++  +  ++   L RP + T    +    
Sbjct: 275 ARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGL-RPSSSTLVALIPVHS 333

Query: 101 RV--KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
               + L  C  LH  V+++G +    VST L   Y     +++AR  FD MPE+ + SW
Sbjct: 334 PFGHEPLAGC--LHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESW 391

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218
           N++IS Y Q      A+ L+++M+  +V  +  T+   LS+CA +GAL++G ++H+I   
Sbjct: 392 NAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIAN 451

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
                +VYV  AL+DMY KCG++  A C+F  M  ++V+SWN MI GYG+HG+G EA+  
Sbjct: 452 EKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKL 511

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           +K M+ A  HP S TFL +L  CSH GLV+EG   F  M S Y + PGI+H  C+VDL G
Sbjct: 512 YKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLG 571

Query: 339 RAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           RAG+L++A E+I+    S   P +W  LLG+C +H++ ++ ++A + L +LE  + G YV
Sbjct: 572 RAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYV 631

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+ +Y   K     A  R+  KS  +  TPG + IEIG++ H F+  D++HP +D IY 
Sbjct: 632 LLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYL 691

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            LE++  +    GY  D    A      E+  E     HSEKLAIAFGL  T  GT +RI
Sbjct: 692 YLEKLTAKMIEAGYRPDTE--AALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRI 749

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +KNLR            S    R ++VRD  R+HHFRDG+CSCGDYW
Sbjct: 750 IKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 181/393 (46%), Gaps = 15/393 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ + +P T  WN+L+   + S    +A+  +  M  A   RPD+ T    L A  
Sbjct: 177 ARKVFDAVPSPDTVLWNTLLAGLSGS----EALEAFVRMAGAGSVRPDSTTLASVLPAAA 232

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            V      + +H F  + G  +   V T L+  YA  G +E AR +FD M   DLV++N+
Sbjct: 233 EVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNA 292

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y+       +++L++ +    +     TLV L+   +  G   +   LH    + G
Sbjct: 293 LISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAG 352

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              +  V  AL  +Y +  ++DSA   F  M ++ + SWN+MI GY  +G  + A++ F+
Sbjct: 353 LDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQ 412

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QM      P+ +T    L  C+  G +  G ++ H +++   L+  +     L+D+Y + 
Sbjct: 413 QMQALNVRPNPLTISSALSACAQLGALSLG-KWVHKIIANEKLELNVYVMTALIDMYVKC 471

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA--SAGDYVLL 398
           G + +A  + ++    + V W  ++    +H     G  A+K    +  A         L
Sbjct: 472 GSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQ---GAEALKLYKDMMDAHLHPTSSTFL 528

Query: 399 ATIYACTKD---EEGVARTRKLIKSNGIKTTPG 428
           + +YAC+     +EG    R +    GI  TPG
Sbjct: 529 SVLYACSHGGLVKEGTTVFRSMTSDYGI--TPG 559



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 142/309 (45%), Gaps = 39/309 (12%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL  YA S+ S  ++   L+     P     NSL+R    SL  L+A   +         
Sbjct: 63  LLLRYA-SLRSPPAHLLRLYRAFPRPDRFLRNSLLR----SLPTLRADLLF--------P 109

Query: 86  RPDTFTFTFTL----KACER------VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
            PD+F+F F       +C R        A    + LH   + SG+     V++ L + Y 
Sbjct: 110 SPDSFSFAFAATSLASSCSRGGISPPSAASAALRPLHALAVASGFAADNFVASALAKLYF 169

Query: 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLV 194
                  AR VFD +P  D V WN++++  + +    EAL+ + RM     V  D  TL 
Sbjct: 170 TLSRGNDARKVFDAVPSPDTVLWNTLLAGLSGS----EALEAFVRMAGAGSVRPDSTTLA 225

Query: 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
            +L + A V    MG  +H    + G  +  +V   L+ +YAKCG+++ A  +F RM   
Sbjct: 226 SVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGP 285

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL-----------LCGCSH 303
           D++++N++I GY ++G    ++  FK+++  G  P S T + L           L GC H
Sbjct: 286 DLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLH 345

Query: 304 QGLVEEGVE 312
             +V+ G++
Sbjct: 346 AHVVKAGLD 354



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 6/177 (3%)

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           LH +A   GF    +V +AL  +Y      + A  VF  +   D + WN+++ G      
Sbjct: 145 LHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS---- 200

Query: 272 GDEAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
           G EA+  F +M  AG   PDS T   +L   +       G    H    +  L       
Sbjct: 201 GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMG-RCVHAFGEKCGLAQHEHVV 259

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
             L+ LY + G +E A  + +     D V +  L+    I+  V       K LV +
Sbjct: 260 TGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGM 316


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/528 (36%), Positives = 310/528 (58%), Gaps = 16/528 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L  AQ LF+ +      +W+ ++  +A+ +    + F+    L+ S +  D ++    +
Sbjct: 100 ALEDAQELFDGMSKRHPYSWSVIVGGYAK-VGNFFSCFWMFRELLRSGAPLDDYSAPVVI 158

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           +AC  +K L   + +H   ++ G +    V   L+  YA   V+E A  +F  M +RDL 
Sbjct: 159 RACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLA 218

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           +W  +I    ++   +E+L  ++RMR + +  D   LV ++ +CA +GA+N    +H   
Sbjct: 219 TWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYI 278

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              G+   V +G A++DMYAKCG+++SA  +F RM+ R+V++W++MI  YG HG+G++A+
Sbjct: 279 NGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKAL 338

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F  ML +G  P+ ITF+ LL  CSH GL+EEG  +F  M   Y + P +KHY C+VDL
Sbjct: 339 ELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDL 398

Query: 337 YGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GRAG+L++ALE+I       D VLW  LLG+C+IHR++++ E   ++L++L++   G Y
Sbjct: 399 LGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHY 458

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ IYA     E +A+TR L+   G++  PG +WIE+G ++++F V DK+HP ++ IY
Sbjct: 459 VLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIY 518

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           + L+ +  + +  GY  D + V       E+  +     HSEKLAIAFGL   P G  +R
Sbjct: 519 KMLKRLGEKLEVAGYHPDTNDVLY--DVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIR 576

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           I KNLR            S+   + +IVRD  R+HHF++G+CSC DYW
Sbjct: 577 ITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 144/320 (45%), Gaps = 9/320 (2%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           DT  F  +L +C   + L + +++H  +  +G  R + V+  L+  Y   G +E A+ +F
Sbjct: 52  DTKRFRSSLLSC---RNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELF 108

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D M +R   SW+ I+  Y +         ++  +      LD ++   ++ +C  +  L 
Sbjct: 109 DGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLK 168

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  +H I  + G     +V   LVDMYA+C  ++ A  +F +M KRD+ +W  MI    
Sbjct: 169 CGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALA 228

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
             G   E++ FF +M   G  PD +  + ++  C+  G + +  +  H  ++       +
Sbjct: 229 ESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKA-KAIHAYINGTGYSLDV 287

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
                ++D+Y + G +E A  + +     + + W  ++ +   H     GE A++    +
Sbjct: 288 ILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQ---GEKALELFPMM 344

Query: 388 EAAS--AGDYVLLATIYACT 405
             +         ++ +YAC+
Sbjct: 345 LRSGILPNRITFVSLLYACS 364


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/554 (38%), Positives = 317/554 (57%), Gaps = 27/554 (4%)

Query: 18  AHEIHGEWLLNSYAISVSSSLSYAQLLFNQI--QNPQTQ-AWNSLIRAFAQSLSPLQAIF 74
           +H +  + LL   A   +  L YA  + +++    P      N+++R  A S  P  A+ 
Sbjct: 46  SHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPFPLNTVLRIAAGSPRPRVALE 105

Query: 75  YYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGY 134
            +       L+ PDT T+   ++AC R+ AL + + LH    ++G+   V V  +L+  Y
Sbjct: 106 LHRR----RLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLY 161

Query: 135 AANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192
            A G+ E+A  VFD MP   R+LVSWNS+++ +       E L ++  M   D   DGFT
Sbjct: 162 GACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFT 221

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM- 251
           +V +L++CA  GAL +G  +H    ++G VE+ +V NAL+D+YAKCG+++ A  +F  M 
Sbjct: 222 IVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMG 281

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
             R V+SW S+IVG   +G G EA+  F  M      P  IT +G+L  CSH GLV++G 
Sbjct: 282 LGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGF 341

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCK 369
            YF  M   Y + P I+H GC+VDL GRAG++E+A + I T  P +P  V+WRTLLGSC 
Sbjct: 342 RYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITM-PLEPNAVVWRTLLGSCA 400

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           +H+ +E+G++A + LV+L+   +GDYVLL+ +YA       V   RK +  + ++  PG 
Sbjct: 401 MHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGH 460

Query: 430 SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
           S +E+ N V++FV+ D+SHP+++ IY  L EI  R +  GY    S V       E   E
Sbjct: 461 SLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEK--E 518

Query: 490 KSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRY 537
            +  YHSE+LAIAF L  +  G  +RI+KNLR            S  Y R++IVRDR R+
Sbjct: 519 TALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRF 578

Query: 538 HHFRDGLCSCGDYW 551
           HHF+ G CSC DYW
Sbjct: 579 HHFQGGACSCKDYW 592


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/528 (39%), Positives = 299/528 (56%), Gaps = 25/528 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LFN        +WN++I  + + +    A   ++ M+       D  ++   + 
Sbjct: 246 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCR-----DVISWNTMIN 300

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
               V  +++ + L         ER +V   +++ G+   G +E A  +F  MP RD+VS
Sbjct: 301 GYAIVGKIDEAKRL----FDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVS 356

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNS+++CY Q     EAL L+++MR   V     T+V LLS+CAH+GAL+ G+ LH    
Sbjct: 357 WNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIN 416

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +     +  VG ALVDMYAKCG +  A  VF+ M  +DVL+WN++I G  +HG   EA  
Sbjct: 417 DNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQ 476

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            FK+M  AG  P+ ITF+ +L  CSH G+V+EG +    M S Y ++P ++HYGC++DL 
Sbjct: 477 LFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLL 536

Query: 338 GRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            RAG LE+A+E+I T     +P     LLG C+IH N E+GE+  K L+ L+   +G Y+
Sbjct: 537 ARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYI 596

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+ IYA  K  +   + R L+K NGI   PG S IE+   VH+FV  D SHP+++ IY 
Sbjct: 597 LLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYE 656

Query: 457 KLEEIMHRAK-FIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           KL EI  R K  IGY+ D   V +     E+  E + A HSEKLAIA+GL       ++R
Sbjct: 657 KLNEIHTRLKSAIGYSADTGNVLL--DMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIR 714

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           IVKNLR            S  Y R++IVRDR R+HHF DG CSC D+W
Sbjct: 715 IVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 192/368 (52%), Gaps = 11/368 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+YA+ +F+ +QNP    +NSLIRA + S +PL+A+  Y+ ML + L +PD  T+ F +K
Sbjct: 145 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGL-KPDHMTYPFVIK 203

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC           +H  V++SG+E    + ++L+  YA    + AA+ +F+    RD+VS
Sbjct: 204 ACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVS 263

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++I  Y +      A  +++RM   DV     +   +++  A VG ++    L     
Sbjct: 264 WNAMIDGYVKHVEMGHARMVFDRMVCRDV----ISWNTMINGYAIVGKIDEAKRLFDEMP 319

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           E   V      N+++  + KCGN++ AF +FS M  RDV+SWNSM+  Y   G+ +EA++
Sbjct: 320 ERNLVS----WNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 375

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM   G  P   T + LL  C+H G +++G+ + H  ++   ++        LVD+Y
Sbjct: 376 LFDQMRAVGVKPTEATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMY 434

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
            + GK+  A +V N     D + W T++    IH NV+  +   K + +       D   
Sbjct: 435 AKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE-AGVEPNDITF 493

Query: 398 LATIYACT 405
           +A + AC+
Sbjct: 494 VAILSACS 501


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/569 (36%), Positives = 321/569 (56%), Gaps = 53/569 (9%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           SV  +L+ A+ LF++       ++N++I+ +A+   P  A+  +  M  + +  PD FTF
Sbjct: 157 SVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGI-LPDEFTF 215

Query: 93  TFTLKACERVKALNKCQELHGFV----------------IRSGYERCVVVS--------- 127
                 C  +   N  +++H  V                I   Y +C +++         
Sbjct: 216 VALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTM 275

Query: 128 ---------TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
                    ++++ GYA  G I  AR +F++M ERD++SW ++IS Y+QA    EAL+L+
Sbjct: 276 GTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELF 335

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG-FVESVYVGNALVDMYAK 237
           + M    +  D  TLV +LS+CA +GA ++G  L+    E G F ++  +  A++DMYAK
Sbjct: 336 KEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAK 395

Query: 238 CGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           CG++DSA  +F R+ K  +    +NSMI G   HG G+ AI+ F++++  G  PD +TF+
Sbjct: 396 CGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFV 455

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS- 354
           G+LC C H GL+EEG + F  M + Y +KP ++HYGC+VDL GR G LE+A +++     
Sbjct: 456 GVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPF 515

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
            ++ V+WR LL +C+ H NV+IGEIA + L+++EA     YVLL+ I A     E   + 
Sbjct: 516 EANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQV 575

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
           RK+++ +GI+  PGWS+IE+G  +H+FV  DKSHP    I   L+++  R K  GY  + 
Sbjct: 576 RKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNT 635

Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIA---------- 524
           + V       E   E   +YHSEKLA+AFGL       ++RIVKNLR  A          
Sbjct: 636 AQVMFDIDEEEK--ESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVS 693

Query: 525 --YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             Y R++ VRD +R+HHFR+G CSC D+W
Sbjct: 694 EIYGREITVRDTMRFHHFRNGSCSCMDFW 722



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 186/383 (48%), Gaps = 49/383 (12%)

Query: 16  RQAHEIHGEWLLNS-----YAIS----------VSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           +Q  +IH + ++N      ++IS              L +++LLF+QI  P    WN++I
Sbjct: 23  KQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMI 82

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
           R +++S +P +AI  Y  M+   ++ P+ FTF F L +C R+ +L    E+H  +I+ G+
Sbjct: 83  RGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGF 142

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           E  + V   L+  Y+  G +  AR++FD    RDLVS+N++I  Y + +    AL L+  
Sbjct: 143 ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGE 202

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH--------------------------- 213
           M+   +  D FT V L S C+ +   N+G  +H                           
Sbjct: 203 MQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKC 262

Query: 214 -------RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
                  R+   MG  +S    +++V  YA+CG ++ A  +F+ M +RDV+SW +MI GY
Sbjct: 263 GLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGY 322

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
              G+  EA+  FK+M   G  PD +T + +L  C+  G  + G   +H  +        
Sbjct: 323 SQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQN 382

Query: 327 IKHYGCLVDLYGRAGKLEKALEV 349
                 ++D+Y + G ++ ALE+
Sbjct: 383 TILTAAVMDMYAKCGSIDSALEI 405


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/563 (37%), Positives = 315/563 (55%), Gaps = 20/563 (3%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           G + HAR + L      H +    LL+ YA      L  AQ +F+++ +P T  W +LI 
Sbjct: 90  GEQLHARSLKLPSHTNPHVLTS--LLSLYA--KCGLLHRAQRVFDEMPHPSTVPWTALIT 145

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
           A+  +   L+   +      A+  RPD+FT    L AC R+  L   + +     + G  
Sbjct: 146 AYMDA-GDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVA 204

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           + V V+T  +  Y   G +  AR VFD M  +D V+W +++  Y       EAL L+  M
Sbjct: 205 QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 264

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           + E +  D + +   LS+C  +GAL++G    R+     F+++  +G AL+DMYAKCG+ 
Sbjct: 265 QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGST 324

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
             A+ VF +MRK+D++ WN+MI+G G+ G    A +   QM  +G   +  TF+GLLC C
Sbjct: 325 VEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSC 384

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVL 360
           +H GL+++G  YFH M   Y++ P I+HYGC+VDL  RAG L++A +++ +   P++ V+
Sbjct: 385 THTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVI 444

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
              LLG CKIHRN E+ E  +K L+ LE  ++G+YV+L+ IY+     E  A+ R  +K+
Sbjct: 445 LGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKA 504

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
            G++  P  SW+E   +VH+F V DKSHP +D IY+KL+E+    K +GY     +V   
Sbjct: 505 KGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFD 564

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
               E   E +  +HSEKLAIAF L  T  G ++R+ KNLR            S    R+
Sbjct: 565 VEDEEK--EHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHRE 622

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +IVRD  R+H FRDG CSC DYW
Sbjct: 623 IIVRDNNRFHCFRDGSCSCNDYW 645



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 6/202 (2%)

Query: 166 TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG-ALNMGIFLHRIACEMGFVES 224
           T ++ HL AL+++  +          T+   L S + +   L  G  LH  + ++    +
Sbjct: 50  TSSALHLHALRVHCLLP----NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTN 105

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
            +V  +L+ +YAKCG L  A  VF  M     + W ++I  Y   G   EA+   +    
Sbjct: 106 PHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFA 165

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            G  PDS T + +L  C+    +  G E       +  +   +      VDLY + G++ 
Sbjct: 166 NGMRPDSFTAVRVLTACARIADLATG-ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMA 224

Query: 345 KALEVINTSSPSDPVLWRTLLG 366
           KA EV +     D V W  ++G
Sbjct: 225 KAREVFDKMRHKDAVAWGAMVG 246


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/607 (36%), Positives = 323/607 (53%), Gaps = 79/607 (13%)

Query: 21  IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           + G+ LL+  A+++  SL YA+ LF  I+NP    +N+LIR  + S +P  A+  +  M 
Sbjct: 39  VSGKLLLHC-AVTLPDSLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMR 97

Query: 81  MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
             S++ PD+F+F F LKA    +AL    +LH   +  G +  + V T L+  YA    +
Sbjct: 98  RKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACL 157

Query: 141 EAARSVFDN-------------------------------MPERDLVSWNSIISCYTQAS 169
             AR VFD                                MP R+L SWN +++ YT+A 
Sbjct: 158 VFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAG 217

Query: 170 FHLEALKLYERMRFED--------VGL-------DGF----------------TLVCLLS 198
               A +++ +M  +D        VG        D F                +L  +LS
Sbjct: 218 ELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLS 277

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +CA  GA   G  LH    + GF++ + V NAL+D Y+KCGNLD A  VF  M +R  +S
Sbjct: 278 ACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVS 337

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           W +MI G  +HG G+EAI  F +M  +   PDSITF+ +L  CSH GLV+ G  YF  MV
Sbjct: 338 WTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMV 397

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS--SPSDPVLWRTLLGSCKIHRNVEI 376
           + Y ++P I+HYGC+VDLYGRAGKL++A + +     SP+D ++WRTLLG+C IH N+ +
Sbjct: 398 NTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPND-IVWRTLLGACSIHGNLYL 456

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
                + L +L+  ++GD+VLL+ IYA     + VA  R+ +    +K TPGWS IE+  
Sbjct: 457 AGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNR 516

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHS 496
            ++ FV  +K +  A   ++KL EIM R +  G    E    +     E+  E S + HS
Sbjct: 517 IIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEE-KEDSVSQHS 575

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           EKLA+AFG+A  P G ++R+VKNLR            S  Y  +++VRDR R+H F  G 
Sbjct: 576 EKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGS 635

Query: 545 CSCGDYW 551
           CSC DYW
Sbjct: 636 CSCRDYW 642



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 153/394 (38%), Gaps = 74/394 (18%)

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN--GVIEAARSVFDNMPERDLVSW 158
           + K+L   +++   + ++      +VS  L+   A      +  AR +F ++   D+  +
Sbjct: 14  KCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDVFMY 73

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           N++I   + +     AL+L+  MR + V L D F+   LL + A+  AL  G+ LH +A 
Sbjct: 74  NTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAV 133

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK------------------------ 253
             G    ++VG  L+ MYA+C  L  A  VF  M +                        
Sbjct: 134 GYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQ 193

Query: 254 -------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA--------------------- 285
                  R++ SWN M+ GY   G    A   F +M +                      
Sbjct: 194 VFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDA 253

Query: 286 ----------GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
                     G  P+ ++  G+L  C+  G  E G    H  V +      I     L+D
Sbjct: 254 FAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFG-RILHGFVEKSGFLQIISVNNALID 312

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AG 393
            Y + G L+ A  V +       V W  ++    +H     GE A++   ++E ++    
Sbjct: 313 TYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMH---GYGEEAIRLFNEMEESNIKPD 369

Query: 394 DYVLLATIYACTKD---EEGVARTRKLIKSNGIK 424
               ++ +YAC+     + G +   +++ + GI+
Sbjct: 370 SITFISILYACSHAGLVDLGCSYFSRMVNTYGIE 403


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/529 (38%), Positives = 306/529 (57%), Gaps = 25/529 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  AQ+LF+++      +W ++I A++ +    +A+     M    +  P+ FTF+  L+
Sbjct: 336 LEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVM-PNMFTFSSVLR 394

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           ACER+  L   ++LH ++++ G E  V V + L+  Y+  G +  A  VF  M   D V 
Sbjct: 395 ACERLYDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVV 451

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNSII+ + Q S   EAL LY+ MR      D  TL  +L +C  +  L +G   H    
Sbjct: 452 WNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAH--VH 509

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            + F + + + NAL+DMY KCG+L+ A  +F+RM K+DV+SW++MI G   +G   EA++
Sbjct: 510 VLKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALN 569

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+ M + G  P+ IT LG+L  CSH GLV EG  YF  M + Y + PG +HYGC++DL 
Sbjct: 570 LFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLL 629

Query: 338 GRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRA KL+  +++I+  +   D V WRTLL +C+  +NV++   A K +++L+    G YV
Sbjct: 630 GRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYV 689

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+ IYA +K    VA  R+ +K  GI+  PG SWIE+  Q+H F++ DKSHP  D I R
Sbjct: 690 LLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINR 749

Query: 457 KLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           +L + + R    GY  D + V   + G   ED L     YHSEKLAI FG+ + P   ++
Sbjct: 750 QLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLR----YHSEKLAIVFGIMSFPKEKTI 805

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI KNL+            +    R +++RD +RYHHF+DG+CSCGDYW
Sbjct: 806 RIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 158/318 (49%), Gaps = 7/318 (2%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D+ T++  +K C    A+ + + +H  +  +GY     ++  L+  Y    ++E A+ +F
Sbjct: 284 DSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLF 343

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D MPER++VSW ++IS Y+ A  +  A++L   M  + V  + FT   +L +C  +  L 
Sbjct: 344 DKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLK 403

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
               LH    ++G    V+V +AL+D+Y+K G L  A  VF  M   D + WNS+I  + 
Sbjct: 404 Q---LHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFA 460

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            H  GDEA+  +K M   GF  D  T   +L  C+   L+E G +  H+ V +++    +
Sbjct: 461 QHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQA-HVHVLKFDQDLIL 519

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
            +   L+D+Y + G LE A  + N  +  D + W T++          +  + +   +++
Sbjct: 520 NN--ALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLA-QNGFSMEALNLFESMKV 576

Query: 388 EAASAGDYVLLATIYACT 405
           +        +L  ++AC+
Sbjct: 577 QGPKPNHITILGVLFACS 594



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 5/232 (2%)

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           A+ + + M    V  D  T   L+  C   GA+  G  +HR     G+    ++ N L++
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY K   L+ A  +F +M +R+V+SW +MI  Y      D A+     M   G  P+  T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F  +L  C     +++     H  + +  L+  +     L+D+Y + G+L +AL+V    
Sbjct: 389 FSSVLRACERLYDLKQ----LHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREM 444

Query: 354 SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
              D V+W +++ +   H + +      K++ ++    A    L + + ACT
Sbjct: 445 MTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRV-GFPADQSTLTSVLRACT 495


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/564 (34%), Positives = 320/564 (56%), Gaps = 28/564 (4%)

Query: 11  GLNKARQAHEIHGEWLLNSYAISVSSSL----------SYAQLLFNQIQNPQTQAWNSLI 60
           GL+ ++Q H +H   + N     VS++L            A++LF +  N    AWN+++
Sbjct: 432 GLSLSKQVH-VHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMM 489

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             + QS    + +  +  ++     R D FT     K C  + A+N+ +++H + I+SGY
Sbjct: 490 AGYTQSHDGHKTLKLFA-LMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGY 548

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           +  + VS+ ++  Y   G + AA+  FD++P  D V+W ++IS   +      A  ++ +
Sbjct: 549 DLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQ 608

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           MR   V  D FT+  L  + + + AL  G  +H  A ++      +VG +LVDMYAKCG+
Sbjct: 609 MRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGS 668

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           +D A+C+F R+   ++ +WN+M+VG   HG G E +  FKQM   G  PD +TF+G+L  
Sbjct: 669 IDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSA 728

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPV 359
           CSH GLV E  ++   M   Y +KP I+HY CL D  GRAG +++A  +I + S  +   
Sbjct: 729 CSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASAS 788

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
           ++RTLL +C++  + E G+     L++LE   +  YVLL+ +YA     + +   R ++K
Sbjct: 789 MYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMK 848

Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
            + +K  PG+SWIE+ N++H FVVDD+S+   ++IYRK+++++   K  GY  +     V
Sbjct: 849 GHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLV 908

Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
                E   E++  YHSEKLA+AFGL +TP  T +R++KNLR            +  Y+R
Sbjct: 909 DVEEEEK--ERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNR 966

Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
           ++++RD  R+H F+DG+CSCGDYW
Sbjct: 967 EIVLRDANRFHRFKDGICSCGDYW 990



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 159/327 (48%), Gaps = 4/327 (1%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           +A+ +F+ +      +WNS+I   AQ+   ++A+  +  +L   L +PD +T T  LKA 
Sbjct: 368 FARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGL-KPDQYTMTSVLKAA 426

Query: 100 ERV-KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
             + + L+  +++H   I+        VST L+  Y+ N  ++ A  +F+     DLV+W
Sbjct: 427 SSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAW 485

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218
           N++++ YTQ+    + LKL+  M  +    D FTL  +  +C  + A+N G  +H  A +
Sbjct: 486 NAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIK 545

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
            G+   ++V + ++DMY KCG++ +A   F  +   D ++W +MI G   +G  + A   
Sbjct: 546 SGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHV 605

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F QM + G  PD  T   L    S    +E+G +  H    + N          LVD+Y 
Sbjct: 606 FSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ-IHANALKLNCTNDPFVGTSLVDMYA 664

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL 365
           + G ++ A  +       +   W  +L
Sbjct: 665 KCGSIDDAYCLFKRIEMMNITAWNAML 691



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 140/293 (47%), Gaps = 10/293 (3%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D  TF   L    +V +L   Q++H   ++ G +  + VS +L+  Y        AR+VF
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG-AL 206
           DNM ERDL+SWNS+I+   Q    +EA+ L+ ++    +  D +T+  +L + + +   L
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGL 433

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
           ++   +H  A ++  V   +V  AL+D Y++   +  A  +F R    D+++WN+M+ GY
Sbjct: 434 SLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGY 492

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKP 325
                G + +  F  M   G   D  T   +   C     + +G + + + + S Y+L  
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
            +     ++D+Y + G +  A    ++    D V W T++  C     +E GE
Sbjct: 553 WVS--SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGC-----IENGE 598



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 7/195 (3%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L KC            ER ++   NL+  Y+  G +  AR VFD MP+RDLVSWNSI++ 
Sbjct: 57  LGKCTHARILTFEENPERFLI--NNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114

Query: 165 YTQASFHL-----EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           Y Q+S  +     +A  L+  +R + V     TL  +L  C H G +      H  AC++
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKI 174

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G     +V  ALV++Y K G +     +F  M  RDV+ WN M+  Y   G  +EAI   
Sbjct: 175 GLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 234

Query: 280 KQMLMAGFHPDSITF 294
                +G +P+ IT 
Sbjct: 235 SAFHSSGLNPNEITL 249



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 7/216 (3%)

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           +++  N  +S Y  +  +   LK +  M   DV  D  T + +L++   V +L +G  +H
Sbjct: 279 EIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVH 338

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            +A ++G    + V N+L++MY K      A  VF  M +RD++SWNS+I G   +G   
Sbjct: 339 CMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEV 398

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV---EYFHMMVSRYNLKPGIKHY 330
           EA+  F Q+L  G  PD  T   +L   S    + EG+   +  H+   + N        
Sbjct: 399 EAVCLFMQLLRCGLKPDQYTMTSVLKAASS---LPEGLSLSKQVHVHAIKINNVSDSFVS 455

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
             L+D Y R   +++A E++      D V W  ++ 
Sbjct: 456 TALIDAYSRNRCMKEA-EILFERHNFDLVAWNAMMA 490



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/431 (19%), Positives = 171/431 (39%), Gaps = 46/431 (10%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           +G   HAR +   +  +   I+   L++ Y  S   SL+YA+ +F+++ +    +WNS++
Sbjct: 57  LGKCTHARILTFEENPERFLINN--LISMY--SKCGSLTYARRVFDKMPDRDLVSWNSIL 112

Query: 61  RAFAQS----LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
            A+AQS    +  +Q  F    +L   +      T +  LK C     +   +  HG+  
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYAC 172

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
           + G +    V+  L+  Y   G ++  + +F+ MP RD+V WN ++  Y +  F  EA+ 
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 232

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
                               LSS  H   LN      R+   +   +S       V  +A
Sbjct: 233 --------------------LSSAFHSSGLNPNEITLRLLARISGDDS---DAGQVKSFA 269

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
              +  S           +++  N  +  Y   G+    +  F  M+ +    D +TF+ 
Sbjct: 270 NGNDASSV---------SEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFIL 320

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
           +L        +  G +  H M  +  L   +     L+++Y +  K   A  V +  S  
Sbjct: 321 MLATAVKVDSLALG-QQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSER 379

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
           D + W +++        +E+  + +   +         Y + + + A +   EG++ +++
Sbjct: 380 DLISWNSVIAGIA-QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQ 438

Query: 417 L----IKSNGI 423
           +    IK N +
Sbjct: 439 VHVHAIKINNV 449


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/546 (37%), Positives = 314/546 (57%), Gaps = 31/546 (5%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S  S +  A+  FN++      +WN++I A  Q+    +A+      L+  + 
Sbjct: 84  LINMY--SKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREAL-----KLLIQMQ 136

Query: 86  RPDT----FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
           R  T    FT +  L  C    A+ +C +LH F I++  +    V T L+  YA    I+
Sbjct: 137 REGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIK 196

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            A  +F++MPE++ V+W+S+++ Y Q  FH EAL ++   +      D F +   +S+CA
Sbjct: 197 DASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACA 256

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS-RMRKRDVLSWN 260
            +  L  G  +H I+ + GF  ++YV ++L+DMYAKCG +  A+ VF   +  R ++ WN
Sbjct: 257 GLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWN 316

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           +MI G+  H R  EA+  F++M   GF PD +T++ +L  CSH GL EEG +YF +MV +
Sbjct: 317 AMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQ 376

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEI 379
           +NL P + HY C++D+ GRAG + KA ++I      +   +W +LL SCKI+ N+E  EI
Sbjct: 377 HNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEI 436

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
           A K L ++E  +AG+++LLA IYA  K  + VAR RKL++   ++   G SWIEI N++H
Sbjct: 437 AAKYLFEMEPNNAGNHILLANIYAANKKWDEVARARKLLRETDVRKERGTSWIEIKNKIH 496

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES--LVAVSGSSSEDFLEKSSAYHSE 497
            F V +++HP  D IY KL+ ++   K + Y  D S  L  V  +  +  L     +HSE
Sbjct: 497 SFTVGERNHPQIDDIYAKLDNLVVELKKLNYKVDTSNDLHDVEENRKQMLLR----HHSE 552

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLAI FGL   P    +RI+KNLR            S + SR++IVRD  R+HHF+DG C
Sbjct: 553 KLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMKLVSKSTSREIIVRDTNRFHHFKDGFC 612

Query: 546 SCGDYW 551
           SCG++W
Sbjct: 613 SCGEFW 618



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 151/321 (47%), Gaps = 6/321 (1%)

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
           + L+ C + ++    +  H  +IR G E  ++ S  L+  Y+   ++++AR  F+ MP +
Sbjct: 48  YLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVK 107

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
            LVSWN++I   TQ +   EALKL  +M+ E    + FT+  +L +CA   A+   + LH
Sbjct: 108 SLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLH 167

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
             + +     + +VG AL+ +YAKC ++  A  +F  M +++ ++W+SM+ GY  +G  +
Sbjct: 168 AFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHE 227

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           EA+  F+   + GF  D       +  C+    + EG +  H +  +      I     L
Sbjct: 228 EALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQ-VHAISHKSGFGSNIYVSSSL 286

Query: 334 VDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           +D+Y + G + +A  V          VLW  ++     H       I  + + Q      
Sbjct: 287 IDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKM-QQRGFFP 345

Query: 393 GDYVLLATIYACTK---DEEG 410
            D   +  + AC+     EEG
Sbjct: 346 DDVTYVCVLNACSHMGLHEEG 366


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/530 (37%), Positives = 309/530 (58%), Gaps = 20/530 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ + +++      +W ++I  ++Q     +A+  +  MLM+  + P+ FTF   L 
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTA-PNEFTFATVLT 119

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +C         +++H  VI++ +E  + V ++L+  YA  G I  AR VFD +PERD+VS
Sbjct: 120 SCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVS 179

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
             +IIS Y Q     EAL L+ R++ E +  +  T   +L++ + + AL+ G  +H    
Sbjct: 180 CTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVL 239

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
                  V + N+L+DMY+KCG+L  +  +F  M +R V+SWN+M+VGY  HG G EA+ 
Sbjct: 240 RAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVE 299

Query: 278 FFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN-LKPGIKHYGCLVD 335
            FK M       PDS+TFL +L GCSH G+ + G+E F+ MV++ +  +P I+HYGC+VD
Sbjct: 300 LFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVD 359

Query: 336 LYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L+GRAG++E+A E I    P +P   +W +LLG+C++H+NV IGE   + L+++E+ +AG
Sbjct: 360 LFGRAGRVEEAFEFIK-KMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAG 418

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
           +YV+L+ +YA     + V   R+L+K   +   PG SWIE+   +H F   D+SHP  + 
Sbjct: 419 NYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEE 478

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           ++ K+ E+  + K  GY  + S V       +   EK    HSEKLA+AFGL  TP GT 
Sbjct: 479 VFAKVRELSIKIKEAGYVPELSCVLYDVDDEQK--EKILQGHSEKLALAFGLICTPGGTP 536

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +RI+KNLR            S  Y R++ +RD+ R+HH   G CSCGDYW
Sbjct: 537 VRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 135/270 (50%), Gaps = 1/270 (0%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L  C    A+ + Q +H  +I++ YE  V + T L+  Y     +  AR V D MPER++
Sbjct: 17  LTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNV 76

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW ++IS Y+Q  +  EAL L+  M       + FT   +L+SC       +G  +H +
Sbjct: 77  VSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSL 136

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             +  F   ++VG++L+DMYAK G +  A  VF  + +RDV+S  ++I GY   G  +EA
Sbjct: 137 VIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEA 196

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F+++   G   + +T+  +L   S    ++ G +  H  V R  L   +     L+D
Sbjct: 197 LDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQ-VHSHVLRAKLPFYVVLQNSLID 255

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y + G L  +  + ++      + W  +L
Sbjct: 256 MYSKCGSLTYSRRIFDSMPERTVISWNAML 285



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 1/164 (0%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L+ C    A+  G  +H    +  +   VY+   L+ +Y KC  L  A  V   M +R+
Sbjct: 16  VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 75

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           V+SW +MI GY   G   EA+  F +MLM+G  P+  TF  +L  C+     + G +  H
Sbjct: 76  VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ-IH 134

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
            +V + + +  I     L+D+Y +AGK+ +A  V +     D V
Sbjct: 135 SLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVV 178


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/537 (39%), Positives = 309/537 (57%), Gaps = 24/537 (4%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAW-NSLIRAFAQSLSPLQA-----IFYYNHMLMASLSRPD 88
            + L+YA+ +F+++  P    W N+L+R +A+S S   +     +  +  ML   ++ PD
Sbjct: 74  PAHLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVA-PD 132

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
           T+TF   LKAC   +A    ++ H   ++ G      V   L+  YA  G   AAR  F 
Sbjct: 133 TYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFG 192

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
                 +VS+N++I+   ++S   EAL L+  M+ + +     T++ +LS+CA +GAL +
Sbjct: 193 RADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQL 252

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G +LH    ++G    V V  ALVDMYAKCG+L+ A  VF  M  RD  +W+ MIV Y  
Sbjct: 253 GRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYAN 312

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           HG G EAIS F++M   G  PD ITFLGLL  CSH GLV EG+ YF  M   + + PGIK
Sbjct: 313 HGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDM-KDHGIVPGIK 371

Query: 329 HYGCLVDLYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           HYGC+ DL  R+G+LE+A + I+    +P+ P+LWRTLL +C  H +VE+G+   + +++
Sbjct: 372 HYGCVTDLLARSGQLERAYKFIDELPINPT-PILWRTLLSACGGHGDVELGKRVFERILE 430

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
           L+ +  GDYV+ + + A T   E + R RKL+   G+   PG S IEI N VH+F   D 
Sbjct: 431 LDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDG 490

Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLA 506
            HP +    + ++E++ + K +GY  D S V       E+    S  YHSEKLAIAFGL 
Sbjct: 491 RHPKSQEARKMVDEVIDQLKLVGYIPDTSHV-FHVEMGEEEKAISLKYHSEKLAIAFGLL 549

Query: 507 TTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            T  G +LR+VKNLR            S+ ++R +I+RD  R+HHF  G+CSCGDYW
Sbjct: 550 NTAPGATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGICSCGDYW 606


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/535 (40%), Positives = 306/535 (57%), Gaps = 23/535 (4%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           +VS+SL  A+ LF++I       WN LIR +A +     AI  Y+ ML   L RPD FT 
Sbjct: 93  AVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGL-RPDNFTL 151

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
            F LKAC  + A+ + + +H +VI+SG+ER + V   L+  YA  G +  A  VFD +  
Sbjct: 152 PFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVV 211

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           RD V WNS+++ Y Q     E++ L   M    V     TLV ++SS A V  L  G  +
Sbjct: 212 RDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREI 271

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H      GF  +  V  AL+DMYAKCG++  A  +F R+R++ V+SWN++I GY +HG  
Sbjct: 272 HGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLA 331

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
             A+  F +M      PD ITF+G+L  CS   L++EG   +++MV  Y + P ++HY C
Sbjct: 332 VGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTC 390

Query: 333 LVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           ++DL G  G+L++A ++I N S   D  +W  LL SCKIH NVE+ E+A++ L++LE   
Sbjct: 391 MIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDD 450

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
           +G+YV+LA +YA +   EGV + R+++    IK     SWIE+ N+V+ F+  D SH ++
Sbjct: 451 SGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNS 510

Query: 452 DMIY---RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
           D IY   ++LE +MH A   GY  D    +V     ED        HSE+LAIAFGL +T
Sbjct: 511 DAIYAELKRLEGLMHEA---GYAPDTG--SVFHDVEEDEKTSMVCSHSERLAIAFGLIST 565

Query: 509 PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             GT L I KNLR            S    R++ VRD  RYH F+ G+CSCGD+W
Sbjct: 566 SPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 182/376 (48%), Gaps = 15/376 (3%)

Query: 62  AFAQSLSPLQAIFYYNHMLMASLS------RPDT-FTFTFTLKACERVKALNKCQELHGF 114
           +F  +L P    FY++     + S      +P T + +T  L++C   KALN  ++LH  
Sbjct: 13  SFIFNLFPFSQSFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQ 72

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
               G      ++T L+  YA +  +  AR++FD +P+++L  WN +I  Y     H  A
Sbjct: 73  FYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNA 132

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           + LY +M    +  D FTL  +L +C+ + A+  G  +H    + G+   ++VG AL+DM
Sbjct: 133 IILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDM 192

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAKCG +  A  VF ++  RD + WNSM+  Y  +G  DE+IS  ++M   G  P   T 
Sbjct: 193 YAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATL 252

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           + ++   +    +  G E  H    R+  +   K    L+D+Y + G ++ AL +     
Sbjct: 253 VTVISSSADVACLPYGRE-IHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLR 311

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV-LLATIYACTKD---EEG 410
               V W  ++    +H  + +G + + + ++ E     D++  +  + AC++    +EG
Sbjct: 312 EKRVVSWNAIITGYAMH-GLAVGALDLFDKMRKE--DRPDHITFVGVLAACSRGRLLDEG 368

Query: 411 VARTRKLIKSNGIKTT 426
            A    +++  GI  T
Sbjct: 369 RALYNLMVRDYGITPT 384


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/563 (37%), Positives = 315/563 (55%), Gaps = 20/563 (3%)

Query: 2    GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
            G + HAR + L      H +    LL+ YA      L  AQ +F+++ +P T  W +LI 
Sbjct: 569  GEQLHARSLKLPSHTNPHVLTS--LLSLYA--KCGLLHRAQRVFDEMPHPSTVPWTALIT 624

Query: 62   AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
            A+  +   L+   +      A+  RPD+FT    L AC R+  L   + +     + G  
Sbjct: 625  AYMDA-GDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVA 683

Query: 122  RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
            + V V+T  +  Y   G +  AR VFD M  +D V+W +++  Y       EAL L+  M
Sbjct: 684  QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 743

Query: 182  RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
            + E +  D + +   LS+C  +GAL++G    R+     F+++  +G AL+DMYAKCG+ 
Sbjct: 744  QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGST 803

Query: 242  DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
              A+ VF +MRK+D++ WN+MI+G G+ G    A +   QM  +G   +  TF+GLLC C
Sbjct: 804  VEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSC 863

Query: 302  SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVL 360
            +H GL+++G  YFH M   Y++ P I+HYGC+VDL  RAG L++A +++ +   P++ V+
Sbjct: 864  THTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVI 923

Query: 361  WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
               LLG CKIHRN E+ E  +K L+ LE  ++G+YV+L+ IY+     E  A+ R  +K+
Sbjct: 924  LGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKA 983

Query: 421  NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
             G++  P  SW+E   +VH+F V DKSHP +D IY+KL+E+    K +GY     +V   
Sbjct: 984  KGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFD 1043

Query: 481  GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
                E   E +  +HSEKLAIAF L  T  G ++R+ KNLR            S    R+
Sbjct: 1044 VEDEEK--EHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHRE 1101

Query: 529  LIVRDRVRYHHFRDGLCSCGDYW 551
            +IVRD  R+H FRDG CSC DYW
Sbjct: 1102 IIVRDNNRFHCFRDGSCSCNDYW 1124



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 6/202 (2%)

Query: 166 TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG-ALNMGIFLHRIACEMGFVES 224
           T ++ HL AL+++  +          T+   L S + +   L  G  LH  + ++    +
Sbjct: 529 TSSALHLHALRVHCLLP----NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTN 584

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
            +V  +L+ +YAKCG L  A  VF  M     + W ++I  Y   G   EA+   +    
Sbjct: 585 PHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFA 644

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            G  PDS T + +L  C+    +  G E       +  +   +      VDLY + G++ 
Sbjct: 645 NGMRPDSFTAVRVLTACARIADLATG-ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMA 703

Query: 345 KALEVINTSSPSDPVLWRTLLG 366
           KA EV +     D V W  ++G
Sbjct: 704 KAREVFDKMRHKDAVAWGAMVG 725


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/563 (37%), Positives = 315/563 (55%), Gaps = 20/563 (3%)

Query: 2    GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
            G + HAR + L      H +    LL+ YA      L  AQ +F+++ +P T  W +LI 
Sbjct: 545  GEQLHARSLKLPSHTNPHVLTS--LLSLYA--KCGLLHRAQRVFDEMPHPSTVPWTALIT 600

Query: 62   AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
            A+  +   L+   +      A+  RPD+FT    L AC R+  L   + +     + G  
Sbjct: 601  AYMDA-GDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVA 659

Query: 122  RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
            + V V+T  +  Y   G +  AR VFD M  +D V+W +++  Y       EAL L+  M
Sbjct: 660  QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 719

Query: 182  RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
            + E +  D + +   LS+C  +GAL++G    R+     F+++  +G AL+DMYAKCG+ 
Sbjct: 720  QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGST 779

Query: 242  DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
              A+ VF +MRK+D++ WN+MI+G G+ G    A +   QM  +G   +  TF+GLLC C
Sbjct: 780  VEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSC 839

Query: 302  SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVL 360
            +H GL+++G  YFH M   Y++ P I+HYGC+VDL  RAG L++A +++ +   P++ V+
Sbjct: 840  THTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVI 899

Query: 361  WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
               LLG CKIHRN E+ E  +K L+ LE  ++G+YV+L+ IY+     E  A+ R  +K+
Sbjct: 900  LGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKA 959

Query: 421  NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
             G++  P  SW+E   +VH+F V DKSHP +D IY+KL+E+    K +GY     +V   
Sbjct: 960  KGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFD 1019

Query: 481  GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
                E   E +  +HSEKLAIAF L  T  G ++R+ KNLR            S    R+
Sbjct: 1020 VEDEEK--EHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHRE 1077

Query: 529  LIVRDRVRYHHFRDGLCSCGDYW 551
            +IVRD  R+H FRDG CSC DYW
Sbjct: 1078 IIVRDNNRFHCFRDGSCSCNDYW 1100



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 6/202 (2%)

Query: 166 TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG-ALNMGIFLHRIACEMGFVES 224
           T ++ HL AL+++  +          T+   L S + +   L  G  LH  + ++    +
Sbjct: 505 TSSALHLHALRVHCLLP----NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTN 560

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
            +V  +L+ +YAKCG L  A  VF  M     + W ++I  Y   G   EA+   +    
Sbjct: 561 PHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFA 620

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            G  PDS T + +L  C+    +  G E       +  +   +      VDLY + G++ 
Sbjct: 621 NGMRPDSFTAVRVLTACARIADLATG-ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMA 679

Query: 345 KALEVINTSSPSDPVLWRTLLG 366
           KA EV +     D V W  ++G
Sbjct: 680 KAREVFDKMRHKDAVAWGAMVG 701


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/523 (37%), Positives = 299/523 (57%), Gaps = 23/523 (4%)

Query: 44  LFNQIQNPQTQAWNSLIRAF-AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
           LF + + P   A+N++I  + +   + L    +   ML  +  R  T      +      
Sbjct: 278 LFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSG---- 333

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
             L     +HG+ ++S +     VST L   Y+    IE+AR +FD  PE+ L SWN++I
Sbjct: 334 -HLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMI 392

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           S YTQ     +A+ L+  M+  +   +  T+ C+LS+CA +GAL++G ++H +     F 
Sbjct: 393 SGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFE 452

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
            S+YV  AL+ MYAKCG++  A  +F  M K++ ++WN+MI GYG+HG+G EA++ F +M
Sbjct: 453 SSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEM 512

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
           L +G  P  +TFL +L  CSH GLV+EG E F+ M+ RY  +P +KHY C+VD+ GRAG 
Sbjct: 513 LNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGH 572

Query: 343 LEKALEVINTSS--PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
           L++AL+ I   S  P   V W TLLG+C+IH++  +     + L +L+  + G +VLL+ 
Sbjct: 573 LQRALQFIEAMSIEPGSSV-WETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSN 631

Query: 401 IYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE 460
           I++  ++    A  R+  K   +   PG++ IEIG   H F   D+SHP    IY KLE+
Sbjct: 632 IHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEK 691

Query: 461 IMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
           +  + +  GY + E+ +A+     E+  E     HSE+LAIAFGL  T  GT +RI+KNL
Sbjct: 692 LEGKMREAGY-QPETELALHDVEEEE-RELMVKVHSERLAIAFGLIATEPGTEIRIIKNL 749

Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R            S    R ++VRD  R+HHF+DG+CSCGDYW
Sbjct: 750 RVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 169/330 (51%), Gaps = 5/330 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++ YA+ +F  +Q P    +N L+R F+ + SP  ++  + H+  ++  +P++ T+ F +
Sbjct: 67  AIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAI 126

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            A    +     + +HG  +  G +  +++ +N+++ Y     +E AR VFD MPE+D +
Sbjct: 127 SAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTI 186

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
            WN++IS Y +   ++E+++++  +  E    LD  TL+ +L + A +  L +G+ +H +
Sbjct: 187 LWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSL 246

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A + G     YV    + +Y+KCG +     +F   RK D++++N+MI GY  +G  + +
Sbjct: 247 ATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELS 306

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +S FK+++++G    S T + L+    H  L+       H    + N          L  
Sbjct: 307 LSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYA----IHGYCLKSNFLSHASVSTALTT 362

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y +  ++E A ++ + S       W  ++
Sbjct: 363 VYSKLNEIESARKLFDESPEKSLPSWNAMI 392


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/530 (37%), Positives = 309/530 (58%), Gaps = 20/530 (3%)

Query: 38   LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
            L  A+ + +++      +W ++I  ++Q     +A+  +  MLM+  + P+ FTF   L 
Sbjct: 528  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTA-PNEFTFATVLT 586

Query: 98   ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            +C         +++H  VI++ +E  + V ++L+  YA  G I  AR VFD +PERD+VS
Sbjct: 587  SCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVS 646

Query: 158  WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
              +IIS Y Q     EAL L+ R++ E +  +  T   +L++ + + AL+ G  +H    
Sbjct: 647  CTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVL 706

Query: 218  EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
                   V + N+L+DMY+KCG+L  +  +F  M +R V+SWN+M+VGY  HG G EA+ 
Sbjct: 707  RAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVE 766

Query: 278  FFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN-LKPGIKHYGCLVD 335
             FK M       PDS+TFL +L GCSH G+ + G+E F+ MV++ +  +P I+HYGC+VD
Sbjct: 767  LFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVD 826

Query: 336  LYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
            L+GRAG++E+A E I    P +P   +W +LLG+C++H+NV IGE   + L+++E+ +AG
Sbjct: 827  LFGRAGRVEEAFEFIK-KMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAG 885

Query: 394  DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            +YV+L+ +YA     + V   R+L+K   +   PG SWIE+   +H F   D+SHP  + 
Sbjct: 886  NYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEE 945

Query: 454  IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
            ++ K+ E+  + K  GY  + S V       +   EK    HSEKLA+AFGL  TP GT 
Sbjct: 946  VFAKVRELSIKIKEAGYVPELSCVLYDVDDEQK--EKILQGHSEKLALAFGLICTPGGTP 1003

Query: 514  LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +RI+KNLR            S  Y R++ +RD+ R+HH   G CSCGDYW
Sbjct: 1004 VRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 135/270 (50%), Gaps = 1/270 (0%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L  C    A+ + Q +H  +I++ YE  V + T L+  Y     +  AR V D MPER++
Sbjct: 484 LTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNV 543

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW ++IS Y+Q  +  EAL L+  M       + FT   +L+SC       +G  +H +
Sbjct: 544 VSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSL 603

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             +  F   ++VG++L+DMYAK G +  A  VF  + +RDV+S  ++I GY   G  +EA
Sbjct: 604 VIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEA 663

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F+++   G   + +T+  +L   S    ++ G +  H  V R  L   +     L+D
Sbjct: 664 LDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQ-VHSHVLRAKLPFYVVLQNSLID 722

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y + G L  +  + ++      + W  +L
Sbjct: 723 MYSKCGSLTYSRRIFDSMPERTVISWNAML 752



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 1/164 (0%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L+ C    A+  G  +H    +  +   VY+   L+ +Y KC  L  A  V   M +R+
Sbjct: 483 VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 542

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           V+SW +MI GY   G   EA+  F +MLM+G  P+  TF  +L  C+     + G +  H
Sbjct: 543 VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ-IH 601

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
            +V + + +  I     L+D+Y +AGK+ +A  V +     D V
Sbjct: 602 SLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVV 645


>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
 gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/503 (40%), Positives = 299/503 (59%), Gaps = 22/503 (4%)

Query: 66  SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV 125
           S SP +  F Y  M    L R D  + +F ++   R+ +L   +++H  ++  G++   +
Sbjct: 2   SSSPTEGFFMYQEMRKKGL-RADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSL 60

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           + TNLM  Y+       A  VFD M +RD ++WN +ISCY +     + L +++ M   +
Sbjct: 61  LLTNLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGE 120

Query: 186 VGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           +G   D  T + LL +CA++GAL  G  +H    E G+  +  + N+L+ MY++ GNLD 
Sbjct: 121 LGCEPDDVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATNLCNSLIAMYSQFGNLDK 180

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           AF VF  M  ++V++W+++I G  ++G G EAI  F++ML  G  PD +TF G+L  CS+
Sbjct: 181 AFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACSN 240

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWR 362
            GLV++G+  F  M   + + P I HYGC+VDL GRAG+L +A ++I +     D  +WR
Sbjct: 241 CGLVDKGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDSTIWR 300

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
           TLLG+C+IHRNV +GE  +++L++L+A  AGDYVLL  +Y+   + + V   RK +K  G
Sbjct: 301 TLLGACRIHRNVILGEHVVEHLIELKAQEAGDYVLLFNLYSSVDNWKKVTELRKFMKEKG 360

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           I+TTP  S IE+  +VH+FVVDD SHP  D IY  L+EI  + K  GY  +      S  
Sbjct: 361 IQTTPASSSIELKGKVHEFVVDDVSHPQKDEIYEMLDEISKQLKIAGYVAE----ITSEL 416

Query: 483 SSEDFLEKSS--AYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
            + D  EK    +YHSEKLAIAFG+  TP GT++RI KNLR            S  Y+R 
Sbjct: 417 PNLDAEEKRYVLSYHSEKLAIAFGVLATPPGTTIRIAKNLRICVDCHNFAKILSGVYNRQ 476

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +I+ D  R+HHFR G CSC DYW
Sbjct: 477 VIITDHTRFHHFRGGHCSCNDYW 499


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/543 (38%), Positives = 304/543 (55%), Gaps = 50/543 (9%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER-VKALNKCQELHG 113
           AWN+LI    +     ++   +  M  A  + P   T+   L AC +  + +    ++HG
Sbjct: 89  AWNALISGHNRGGRFGESCGSFVDMARAGAA-PTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 114 FVIRSG--------------YERC-----------------VVVSTNLMRGYAANGVIEA 142
            V+ SG              Y  C                 VV  T+L+ G A  G ++ 
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR +FD MPERD VSW ++I  Y  A+   EAL+++  M++ +V  D FT+V ++++CA 
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +GAL MG ++       G     +VGNAL+DMY+KCG+++ A  VF  M  RD  +W ++
Sbjct: 268 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAI 327

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I+G  V+G  +EAI  F +M+     PD +TF+G+L  C+H GLV++G E+F  M+  YN
Sbjct: 328 ILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYN 387

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIA 380
           + P + HYGC++DL GRAGK+ +AL+ I+   P  P   +W TLL +C++H N EIGE+ 
Sbjct: 388 IAPNVVHYGCIIDLLGRAGKITEALDTID-QMPMTPNSTIWGTLLAACRVHGNSEIGELV 446

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + L++L+  ++  Y+LL+ IYA     E V R R  I   GIK  PG S IE+   +H+
Sbjct: 447 AERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHE 506

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           FV  D+SHP +  IY KLE I+     +GY  D + V V  +  E   +K   +HSEKLA
Sbjct: 507 FVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEK--KKVLYWHSEKLA 564

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           IAF L ++   T +RIVKNLR            S  Y R+++VRDR R+HHFR G CSC 
Sbjct: 565 IAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCK 624

Query: 549 DYW 551
           DYW
Sbjct: 625 DYW 627



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 148/333 (44%), Gaps = 44/333 (13%)

Query: 71  QAIFYYNHMLMASLSRPDTFTFTFTLKACERVK----ALNKCQELHGFVIRSGYERCVVV 126
            A+  Y  ML A   RPD +TF   LKA  R      +    + +H  V+R G  R   V
Sbjct: 2   DAVAGYARML-ARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 127 STNLMRGYAANGVIEAARSVFD--NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           +++L+  Y A G   AAR++    + P    V+WN++IS + +     E+   +  M   
Sbjct: 61  ASSLVAAYTAGGDGAAARALVGECDTP----VAWNALISGHNRGGRFGESCGSFVDMARA 116

Query: 185 DVGLDGFTLVCLLSSCAH-VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
                  T V +LS+C      + +G+ +H      G +  + V NALVDMYA+C ++ S
Sbjct: 117 GAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGS 176

Query: 244 AFCV-------------------------------FSRMRKRDVLSWNSMIVGYGVHGRG 272
           A+ V                               F RM +RD +SW +MI GY    R 
Sbjct: 177 AWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARF 236

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EA+  F++M  +    D  T + ++  C+  G +E G E+  + +SR  +K        
Sbjct: 237 REALEMFREMQYSNVSADEFTMVSVITACAQLGALEMG-EWVRVYMSRQGIKMDAFVGNA 295

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           L+D+Y + G +E+AL+V       D   W  ++
Sbjct: 296 LIDMYSKCGSIERALDVFKGMHHRDKFTWTAII 328



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 5/236 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+++    T +W ++I  +  +    +A+  +  M  +++S  D FT    + AC 
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVS-ADEFTMVSVITACA 266

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++ AL   + +  ++ R G +    V   L+  Y+  G IE A  VF  M  RD  +W +
Sbjct: 267 QLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTA 326

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG--IFLHRIACE 218
           II       +  EA++++ RM       D  T + +L++C H G ++ G   FL  I   
Sbjct: 327 IILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAY 386

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGD 273
                 V+ G  ++D+  + G +  A     +M    +   W +++    VHG  +
Sbjct: 387 NIAPNVVHYG-CIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSE 441


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/532 (37%), Positives = 311/532 (58%), Gaps = 24/532 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F++++     +W ++I  ++Q     +A+  +  ML +  + P+ FTF   L 
Sbjct: 61  LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSD-TEPNEFTFATVLS 119

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +C         +++H  + +  YE  + V ++L+  YA  G I  AR VF+ +PERD+VS
Sbjct: 120 SCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 179

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG--IFLHRI 215
             +IIS Y Q     EAL+L+ R++ E +  +  T   LL++ + + AL+ G  +  H +
Sbjct: 180 CTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVL 239

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
            CE+ F   V + N+L+DMY+KCGNL+ A  +F+ M  R V+SWN+M+VGY  HG+G E 
Sbjct: 240 RCELPFY--VVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEV 297

Query: 276 ISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYF-HMMVSRYNLKPGIKHYGCL 333
           +  FK M       PDS+TFL +L GCSH GL ++G+E F  MM     ++ GI+HYGC+
Sbjct: 298 VKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCV 357

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           +DL GRAG++E+A E+I    P +P   +W +LLG+C++H N  IGE     L+++E  +
Sbjct: 358 IDLLGRAGRVEEAFELIK-KMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPEN 416

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
           AG+YV+L+ +YA     E V   R+L+    +   PG SWIE+   +H F   D+SHP  
Sbjct: 417 AGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRR 476

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
           + ++ K+ E++ + K  GY  D+S V       E+  EK    HSEKLA+AFGL +T +G
Sbjct: 477 EEVFLKVRELLVKFKESGYVPDQSCVLY--DVDEEQKEKILLGHSEKLALAFGLISTSEG 534

Query: 512 TSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             LR++KNLR            S  Y R + +RD+ R+HH   G+CSCGDYW
Sbjct: 535 VPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 156/316 (49%), Gaps = 5/316 (1%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           +   L  C   +A+ + Q +H  +I++ Y   V +ST L+  Y     +  AR VFD M 
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           ER++VSW ++IS Y+Q  F  EAL L+ +M   D   + FT   +LSSC       +G  
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ 132

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H    +  +   ++VG++L+DMYAK G +  A  VF  + +RDV+S  ++I GY   G 
Sbjct: 133 IHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 192

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
            +EA+  F ++   G   + +T+  LL   S    ++ G +  H  V R  L   +    
Sbjct: 193 DEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQ-VHSHVLRCELPFYVVLQN 251

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQLEAA 390
            L+D+Y + G L  A ++ N       + W  +L G  K  + +E+  + +  L++ E  
Sbjct: 252 SLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEV--VKLFKLMREENK 309

Query: 391 SAGDYV-LLATIYACT 405
              D V  LA +  C+
Sbjct: 310 VKPDSVTFLAVLSGCS 325


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/538 (37%), Positives = 306/538 (56%), Gaps = 20/538 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S    L  AQ++F+Q++     +WNS+I A+ Q+  P  A+ ++  M +  + 
Sbjct: 263 LINMY--SKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGI- 319

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAAR 144
           RPD  T         ++      + + GFVIR  + ++ VV+   L+  YA  G +  A 
Sbjct: 320 RPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH 379

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHV 203
           +VFD +P +D +SWN++++ YTQ     EA+  Y  M    D   +  T V ++ + +HV
Sbjct: 380 TVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHV 439

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           GAL  G+ +H    +      V+V   L+D+Y KCG L+ A  +F  + +   + WN++I
Sbjct: 440 GALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAII 499

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
              G+HGRG+EA+  FK ML      D ITF+ LL  CSH GLV+EG + F +M   Y +
Sbjct: 500 ASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGI 559

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           KP +KHYGC+VDL GRAG LEKA E++ N     D  +W  LL +CKI+ N E+G +A  
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            L+++++ + G YVLL+ IYA T+  EGV + R L +  G++ TPGWS + +G++   F 
Sbjct: 620 RLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFY 679

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             +++HP    IY++L+ +  + K +GY  D S V       ED  E+    HSE+LAIA
Sbjct: 680 TGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVY--QDIEEDEKEQILNSHSERLAIA 737

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           FG+ +TP  + +RI KNLR            S    R+++VRD  R+HHF+DG+CSC 
Sbjct: 738 FGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSCA 795



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 167/343 (48%), Gaps = 8/343 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNH---MLMA 82
           L+N Y      SLS +   F+ I      +WNS+I A+ +     +A+   N    M   
Sbjct: 60  LINLYVTHGDISLSRST--FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGG 117

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
              RPD +TF   LKAC    +L   +++H  V + G+E  V V+ +L+  Y+  GV++ 
Sbjct: 118 GHLRPDFYTFPPILKAC---VSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDV 174

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VF +MP +D+ SWN++IS + Q      AL +  RM+ E V +D  T+  +L  CA 
Sbjct: 175 AHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQ 234

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
              +  G+ +H    + G    V+V NAL++MY+K G L  A  VF +M  RD++SWNS+
Sbjct: 235 SDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSI 294

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I  Y  +     A+ FFK M + G  PD +T + L    S              ++ R  
Sbjct: 295 IAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREW 354

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           L   +     LV++Y + G +  A  V +     D + W TL+
Sbjct: 355 LDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLV 397



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 151/306 (49%), Gaps = 15/306 (4%)

Query: 67  LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV 126
           LS L+++  +      SL +   F   F   +C  V A  K   LH  ++  G  + +V+
Sbjct: 2   LSLLKSVSKFYKSATTSLHKDADFNALFN--SCVNVNATKK---LHALLLVFGKSQNIVL 56

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
           ST L+  Y  +G I  +RS FD + ++++ SWNSIIS Y +   + EA+    ++ F   
Sbjct: 57  STKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL-FSMC 115

Query: 187 G-----LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           G      D +T   +L +C    +L  G  +H    +MGF + V+V  +LV +Y++ G L
Sbjct: 116 GGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVL 172

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           D A  VF  M  +DV SWN+MI G+  +G    A+    +M   G   D+IT   +L  C
Sbjct: 173 DVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVC 232

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
           +    V  GV   H+ V ++ L   +     L+++Y + G+L+ A  V +     D V W
Sbjct: 233 AQSDDVINGV-LIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSW 291

Query: 362 RTLLGS 367
            +++ +
Sbjct: 292 NSIIAA 297


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/534 (38%), Positives = 307/534 (57%), Gaps = 22/534 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A+ +F++ +      WN+L RA A      + +  Y  M    +   D FT+TF L
Sbjct: 128 SIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPS-DRFTYTFVL 186

Query: 97  KACE----RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
           KAC      V  L K +E+H  ++R GYE  + V T L+  YA  G +  A SVF  MP 
Sbjct: 187 KACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPT 246

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFE--DVGLDGFTLVCLLSSCAHVGALNMGI 210
           ++ VSW+++I+C+ +    ++AL+L++ M  E  D   +  T+V +L +CA + AL  G 
Sbjct: 247 KNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGK 306

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H      G    + V NAL+ MY +CG +     VF  M+ RDV+SWNS+I  YG+HG
Sbjct: 307 LIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHG 366

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
            G +AI  F+ M+  G  P  I+F+ +L  CSH GLVEEG   F  M+S+Y + PG++HY
Sbjct: 367 FGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHY 426

Query: 331 GCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
            C+VDL GRA +L++A+++I +      P +W +LLGSC+IH NVE+ E A   L +LE 
Sbjct: 427 ACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEP 486

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
            +AG+YVLLA IYA  K         KL+++ G++  PG SWIE+  +V+ FV  D+ +P
Sbjct: 487 RNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNP 546

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
             + I+  L ++ +  K  GY    ++V       E   E+    HSEKLA+AFGL  T 
Sbjct: 547 QIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEK--ERIVLGHSEKLAVAFGLINTV 604

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            G ++RI KNLR            S   +R+++VRD  R+HHF+DG+CSCGDYW
Sbjct: 605 KGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 159/341 (46%), Gaps = 16/341 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL+ +  L N I+       N LI++  +  +  QAI      L+     P   TF   +
Sbjct: 35  SLNPSANLMNDIKGNN----NQLIQSLCKGGNLKQAIH-----LLCCEPNPTQRTFEHLI 85

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            +C +  +L+   ++H  ++ SG+++   ++T L+  Y   G I+ AR VFD   ER + 
Sbjct: 86  CSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIY 145

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA----HVGALNMGIFL 212
            WN++           E L LY +M +  +  D FT   +L +C      V  L  G  +
Sbjct: 146 VWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEI 205

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H      G+  +++V   L+D+YAK G++  A  VF  M  ++ +SW++MI  +  +   
Sbjct: 206 HAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMP 265

Query: 273 DEAISFFKQMLMAGFH--PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
            +A+  F+ M++      P+S+T + +L  C+    +E+G +  H  + R  L   +   
Sbjct: 266 MKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQG-KLIHGYILRRGLDSILPVL 324

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
             L+ +YGR G++     V +     D V W +L+    +H
Sbjct: 325 NALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMH 365



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 8/216 (3%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           L+ SCA   +L+ G+ +HR     GF +  ++   L++MY + G++D A  VF   R+R 
Sbjct: 84  LICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERT 143

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL----VEEGV 311
           +  WN++     + G G E +  + QM   G   D  T+  +L  C    L    +++G 
Sbjct: 144 IYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGK 203

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           E  H  + R+  +  I     L+D+Y + G +  A  V       + V W  ++ +C   
Sbjct: 204 E-IHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMI-ACFAK 261

Query: 372 RNVEIGEIAMKNLVQLEA--ASAGDYVLLATIYACT 405
             + +  + +  L+ LEA  +      ++  + AC 
Sbjct: 262 NEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACA 297


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/593 (36%), Positives = 322/593 (54%), Gaps = 67/593 (11%)

Query: 6   HARYVGLN-KARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFA 64
           H RY  LN K  +A+  HG+             + ++  LF+Q  +P    + + I   +
Sbjct: 60  HPRYPVLNLKLHRAYASHGK-------------IRHSLALFHQTIDPDLFLFTAAINTAS 106

Query: 65  QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY---- 120
            +    QA   Y  +L + ++ P+ FTF+  LK+C    +    + +H  V++ G     
Sbjct: 107 INGLKDQAFLLYVQLLSSEIN-PNEFTFSSLLKSC----STKSGKLIHTHVLKFGLGIDP 161

Query: 121 ---------------------------ERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
                                      ER +V ST ++  YA  G +EAAR++FD+M ER
Sbjct: 162 YVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCER 221

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           D+VSWN +I  Y Q  F  +AL L++++  E     D  T+V  LS+C+ +GAL  G ++
Sbjct: 222 DIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWI 281

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H          +V V   L+DMY+KCG+L+ A  VF+   ++D+++WN+MI GY +HG  
Sbjct: 282 HVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYS 341

Query: 273 DEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
            +A+  F +M  + G  P  ITF+G L  C+H GLV EG+  F  M   Y +KP I+HYG
Sbjct: 342 QDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYG 401

Query: 332 CLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           CLV L GRAG+L++A E I N +  +D VLW ++LGSCK+H +  +G+   + L+ L   
Sbjct: 402 CLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIK 461

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           ++G YVLL+ IYA   D EGVA+ R L+K  GI   PG S IEI N+VH+F   D+ H  
Sbjct: 462 NSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSK 521

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
           +  IY  L +I  R K  GY  + + V      +E   E+S   HSE+LAIA+GL +T  
Sbjct: 522 SKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEK--EQSLQVHSERLAIAYGLISTKP 579

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G+ L+I KNLR            S    R +++RDR R+HHF DG CSCGD+W
Sbjct: 580 GSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 164/381 (43%), Gaps = 50/381 (13%)

Query: 89  TFTFTFTLKACERVKAL-NKCQ------ELHGFVIRSG---YERCVVVSTNLMRGYAANG 138
           T T  F L   E++  L +K Q      ++H  ++R     + R  V++  L R YA++G
Sbjct: 19  TATARFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHG 78

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
            I  + ++F    + DL  + + I+  +      +A  LY ++   ++  + FT   LL 
Sbjct: 79  KIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLK 138

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR------ 252
           SC    +   G  +H    + G     YV   LVD+YAK G++ SA  VF RM       
Sbjct: 139 SC----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVS 194

Query: 253 -------------------------KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG- 286
                                    +RD++SWN MI GY  HG  ++A+  F+++L  G 
Sbjct: 195 STAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGK 254

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
             PD IT +  L  CS  G +E G  + H+ V    ++  +K    L+D+Y + G LE+A
Sbjct: 255 PKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEA 313

Query: 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
           + V N +   D V W  ++    +H   +        +  +      D   + T+ AC  
Sbjct: 314 VLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAH 373

Query: 407 D---EEGVARTRKLIKSNGIK 424
                EG+     + +  GIK
Sbjct: 374 AGLVNEGIRIFESMGQEYGIK 394


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/532 (37%), Positives = 305/532 (57%), Gaps = 22/532 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L   + +F+ + +     WNS+I    Q      A+  +  M  + +S PD  T      
Sbjct: 221 LEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVS-PDVLTLLSLAS 279

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTN-LMRGYAANGVIEAARSVFDNMPERDLV 156
           A  +   +   + +H +++R G++   +++ N ++  YA    IEAA+ +FD+MP RD V
Sbjct: 280 AIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAV 339

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF--TLVCLLSSCAHVGALNMGIFLHR 214
           SWN++I+ Y Q     EA+ +Y+ M+  + GL     T V +L + +H+GAL  G  +H 
Sbjct: 340 SWNTLITGYMQNGLASEAIHVYDHMQKHE-GLKPIQGTFVSVLPAYSHLGALQQGTRMHA 398

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
           ++ + G    VYVG  ++D+YAKCG LD A  +F +  +R    WN++I G GVHG G +
Sbjct: 399 LSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAK 458

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+S F QM   G  PD +TF+ LL  CSH GLV++G  +F+MM + Y +KP  KHY C+V
Sbjct: 459 ALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMV 518

Query: 335 DLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           D++GRAG+L+ A + I N     D  +W  LLG+C+IH NVE+G++A +NL +L+  + G
Sbjct: 519 DMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVG 578

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKS--HPDA 451
            YVL++ +YA     +GV   R L++   ++ TPGWS IE+   V+ F   ++   HP  
Sbjct: 579 YYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQH 638

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
           + I R+L +++ + + +GY  D S V       ED  E+    HSE+LAIAFG+  TP  
Sbjct: 639 EEIQRELLDLLAKIRSLGYVPDYSFVL--QDVEEDEKEQILNNHSERLAIAFGIINTPPR 696

Query: 512 TSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           T L I KNLR            S    R++IVRD  R+HHF+DG CSCGD+W
Sbjct: 697 TPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 178/363 (49%), Gaps = 5/363 (1%)

Query: 45  FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
           F+++++    AWN+++    ++    +A+  +  M+M  ++  D  T +  L  C  +  
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAG-DAVTVSSVLPMCVLLGD 185

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
                 +H + ++ G +  + V   ++  Y   G++E  R VFD M  RDLV+WNSIIS 
Sbjct: 186 RALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISG 245

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF-VE 223
           + Q      A++++  MR   V  D  TL+ L S+ A  G +  G  +H      G+ V 
Sbjct: 246 HEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVG 305

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            +  GNA+VDMYAK   +++A  +F  M  RD +SWN++I GY  +G   EAI  +  M 
Sbjct: 306 DIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQ 365

Query: 284 M-AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
              G  P   TF+ +L   SH G +++G    H +  +  L   +    C++DLY + GK
Sbjct: 366 KHEGLKPIQGTFVSVLPAYSHLGALQQGTR-MHALSIKTGLNLDVYVGTCVIDLYAKCGK 424

Query: 343 LEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
           L++A+ +   +       W  ++    +H +     +++ + +Q E  S      ++ + 
Sbjct: 425 LDEAMLLFEQTPRRSTGPWNAVISGVGVHGH-GAKALSLFSQMQQEGISPDHVTFVSLLA 483

Query: 403 ACT 405
           AC+
Sbjct: 484 ACS 486



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 132/279 (47%), Gaps = 4/279 (1%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGVIEAARSV 146
           D FTF   L+A +         +LH   +R G  R     S  L+  Y   G +  A   
Sbjct: 70  DAFTFPPLLRAAQ---GPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD M  RD+ +WN+++S   + +   EA+ L+ RM  E V  D  T+  +L  C  +G  
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            + + +H  A + G  + ++V NA++D+Y K G L+    VF  M  RD+++WNS+I G+
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGH 246

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
              G+   A+  F  M  +G  PD +T L L    +  G +  G      MV R      
Sbjct: 247 EQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGD 306

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           I     +VD+Y +  K+E A  + ++    D V W TL+
Sbjct: 307 IIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLI 345



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 140/310 (45%), Gaps = 8/310 (2%)

Query: 21  IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           I G  +++ YA    S +  AQ +F+ +      +WN+LI  + Q+    +AI  Y+HM 
Sbjct: 308 IAGNAIVDMYA--KLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQ 365

Query: 81  MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
                +P   TF   L A   + AL +   +H   I++G    V V T ++  YA  G +
Sbjct: 366 KHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKL 425

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
           + A  +F+  P R    WN++IS         +AL L+ +M+ E +  D  T V LL++C
Sbjct: 426 DEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAAC 485

Query: 201 AHVGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLS 258
           +H G ++ G  F + +    G          +VDM+ + G LD AF     M  K D   
Sbjct: 486 SHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAI 545

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           W +++    +HG   E      Q L     P ++ +  L+     +    +GV+    +V
Sbjct: 546 WGALLGACRIHGN-VEMGKVASQNLFE-LDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLV 603

Query: 319 SRYNLK--PG 326
            R NL+  PG
Sbjct: 604 RRQNLQKTPG 613


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/567 (35%), Positives = 323/567 (56%), Gaps = 33/567 (5%)

Query: 14  KARQAHEIHGEWLLNSYAISVS------------SSLSYAQLLFNQIQNPQTQAWNSLIR 61
           + +Q  ++H   ++  Y  S S             +++Y  LLF  +  P    +NS+I+
Sbjct: 21  RVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIK 80

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
           + ++   PL  + YY  ML +++S P  +TFT  +K+C  + AL   + +H   + SG+ 
Sbjct: 81  STSKLRLPLHCVAYYRRMLSSNVS-PSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFG 139

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
               V   L+  Y+  G +E AR VFD MPE+ +V+WNS++S + Q     EA++++ +M
Sbjct: 140 LDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQM 199

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           R      D  T V LLS+CA  GA+++G ++H+     G   +V +G AL+++Y++CG++
Sbjct: 200 RESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDV 259

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCG 300
             A  VF +M++ +V +W +MI  YG HG G +A+  F +M    G  P+++TF+ +L  
Sbjct: 260 GKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSA 319

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN----TSSPS 356
           C+H GLVEEG   +  M   Y L PG++H+ C+VD+ GRAG L++A + I+    T   +
Sbjct: 320 CAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKAT 379

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
            P LW  +LG+CK+HRN ++G    K L+ LE  + G +V+L+ IYA +   + V+  R 
Sbjct: 380 APALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRD 439

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
            +  N ++   G+S IE+ N+ + F + D+SH +   IYR LE ++ R K IGY      
Sbjct: 440 GMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSE- 498

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
             V     E+  E +  YHSEKLA+AFGL  T D  ++ IVKNLR            SI 
Sbjct: 499 -EVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIV 556

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +R + VRD++R+HHF++G CSC DYW
Sbjct: 557 SNRQITVRDKLRFHHFQNGSCSCLDYW 583


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/486 (39%), Positives = 285/486 (58%), Gaps = 15/486 (3%)

Query: 79  MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
           ++  S  + D  T     KAC  +  L++ +++H   I++G++  + V++ ++  Y   G
Sbjct: 20  LIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCG 79

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
            +  A  VF+ +   D V+W S+IS         +AL++Y RMR   V  D +T   L+ 
Sbjct: 80  DMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIK 139

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           + + V AL  G  LH    ++  V   +VG +LVDMYAKCGN++ A+ +F +M  R++  
Sbjct: 140 ASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIAL 199

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WN+M+VG   HG  +EA++ FK M   G  PD ++F+G+L  CSH GL  E  EY H M 
Sbjct: 200 WNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMP 259

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIG 377
           + Y ++P I+HY CLVD  GRAG +++A +VI T    +   + R LLG+C+I  +VE G
Sbjct: 260 NDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXG 319

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
           +     L  LE   +  YVLL+ IYA     + V   RK++K   +K  PG+SWI++ N 
Sbjct: 320 KRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNM 379

Query: 438 VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSE 497
           +H FVVDD+SHP AD+IY K+EE+M   +  GY  D   V +     E   E+S  YHSE
Sbjct: 380 LHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEK--ERSLYYHSE 437

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLAIA+GL +TP  T++R++KNLR            S  + R++++RD  R+HHFRDG+C
Sbjct: 438 KLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVC 497

Query: 546 SCGDYW 551
           SCGDYW
Sbjct: 498 SCGDYW 503



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 2/226 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A ++FN I  P   AW S+I     + +  QA+  Y H +  S   PD +TF   +KA  
Sbjct: 84  AGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIY-HRMRQSRVMPDEYTFATLIKASS 142

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            V AL + ++LH  VI+        V T+L+  YA  G IE A  +F  M  R++  WN+
Sbjct: 143 CVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNA 202

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEM 219
           ++    Q     EA+ L++ M+   +  D  + + +LS+C+H G  +    +LH +  + 
Sbjct: 203 MLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDY 262

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           G    +   + LVD   + G +  A  V   M  +   S N  ++G
Sbjct: 263 GIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLG 308



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 1/203 (0%)

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           +AL+L+  +       D  TL     +C  +  L+ G  +H  A + GF   ++V + ++
Sbjct: 13  KALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGIL 72

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           DMY KCG++ +A  VF+ +   D ++W SMI G   +G  D+A+  + +M  +   PD  
Sbjct: 73  DMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEY 132

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TF  L+   S    +E+G +  H  V + +          LVD+Y + G +E A  +   
Sbjct: 133 TFATLIKASSCVTALEQGRQ-LHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKK 191

Query: 353 SSPSDPVLWRTLLGSCKIHRNVE 375
            +  +  LW  +L     H N E
Sbjct: 192 MNVRNIALWNAMLVGLAQHGNAE 214


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/559 (35%), Positives = 321/559 (57%), Gaps = 49/559 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++ A+L+F+++ +     W+ +I  + QS     A+  +  M   ++  PD    +  L 
Sbjct: 173 IAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNV-EPDEMMLSTVLS 231

Query: 98  ACERVKALNKCQELHGFVIRSG--------------YERC-----------------VVV 126
           AC R   L+  + +H F++ +               Y  C                 +V 
Sbjct: 232 ACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVA 291

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
           ST ++ GY+  G IE ARSVF+ M ++DLV W+++IS Y ++    EAL L+  M+   +
Sbjct: 292 STAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGI 351

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T++ ++++CAH+GAL+   ++H    + GF  ++ + NAL++MYAKCG+L+ A  
Sbjct: 352 KPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARR 411

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F +M +++V+SW  MI  + +HG    A+ FF QM      P+ ITF+G+L  CSH GL
Sbjct: 412 IFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGL 471

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTL 364
           VEEG + F+ M++ +N+ P   HYGC+VDL+GRA  L +ALE++  + P  P  ++W +L
Sbjct: 472 VEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVE-AMPLAPNVIIWGSL 530

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
           + +C++H  +E+GE A K L++L+    G +V L+ IYA  +  E V + RKL+K  GI 
Sbjct: 531 MAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGIS 590

Query: 425 TTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSS 484
              G S  E+ N++H+F+V D+SH  AD IY KL E++ + K +GY+ +   + V     
Sbjct: 591 KERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEE 650

Query: 485 EDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVR 532
           E   ++   +HSEKLA+ +GL     G+ +RI+KNLR            S  Y R+++VR
Sbjct: 651 E--KKEVVLWHSEKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVR 708

Query: 533 DRVRYHHFRDGLCSCGDYW 551
           DR R+HH++DG+CSC DYW
Sbjct: 709 DRTRFHHYKDGVCSCKDYW 727



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/431 (29%), Positives = 207/431 (48%), Gaps = 43/431 (9%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           ++SSSL YA  +FN I  P+T   N  +R  ++S  P + +  Y  M    L+  D F+F
Sbjct: 67  ALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLA-VDRFSF 125

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              LKA  RVK+L +  E+HG   + G++    V T L+R YAA G I  AR +FD M  
Sbjct: 126 PPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFH 185

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           RD+V+W+ +I  Y Q+    +AL L+E M+  +V  D   L  +LS+C   G L+ G  +
Sbjct: 186 RDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMI 245

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAF--------------------------- 245
           H    E   V   ++ +ALV MYA CG++D A                            
Sbjct: 246 HDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQI 305

Query: 246 ----CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
                VF++M K+D++ W++MI GY       EA++ F +M   G  PD +T L ++  C
Sbjct: 306 ENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITAC 365

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
           +H G +++  ++ H+ V +      +     L+++Y + G LE+A  + +     + + W
Sbjct: 366 AHLGALDQA-KWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISW 424

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACTKD---EEGVARTRK 416
             ++ +  +H +      A++   Q+E  +        +  +YAC+     EEG      
Sbjct: 425 TCMISAFAMHGD---AGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYS 481

Query: 417 LIKSNGIKTTP 427
           +I  + I  TP
Sbjct: 482 MINEHNI--TP 490


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/485 (40%), Positives = 294/485 (60%), Gaps = 25/485 (5%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGY----AANGVIEA 142
           P+ FT+ F LKAC  +  LN  + +HG V++ G+   V V   L+  Y       G IE 
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR VFD M + D VSW+++I  Y +     +A+ L+  M+ + V  D  T+V +LS+C  
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +GAL +G ++     +    ++V + NAL+DM+AKCG++D A  +F  MR+R+++SW S+
Sbjct: 128 LGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSV 187

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I G  +HGRG EA++ F++M+ +G  PD + F+GLL  CSH GLV++G  YF  M   ++
Sbjct: 188 IGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFS 247

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD--PVLWRTLLGSCKIHRNVEIGEIA 380
           + P I+HYGC+VD+  RAG +++AL+ +    P D  PV+WRTL+ +C+ H  +++GE  
Sbjct: 248 IVPKIEHYGCMVDMLCRAGLVKEALKFVQ-EMPIDPNPVVWRTLINACRAHGELKLGEKI 306

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + L++ E     +YVLL+ IYA   D E   R R+ +   G+K  PG + IE+ N++++
Sbjct: 307 TRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYE 366

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           FV  DKSH  +  IY  ++E+    K  GY  T  E L+ +     ED L +    HSEK
Sbjct: 367 FVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNR----HSEK 422

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LAIAF L  TP GT +RIVKNLR            S  Y+R+++VRDR R+HHF++GLCS
Sbjct: 423 LAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCS 482

Query: 547 CGDYW 551
           C D+W
Sbjct: 483 CRDFW 487


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/565 (36%), Positives = 320/565 (56%), Gaps = 31/565 (5%)

Query: 12   LNKARQAH---EIHGEWLLNSYAI--------SVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
            L + RQ H    +HG  +L +  +        S   +L  A  LF+ +    + +W+ ++
Sbjct: 751  LTQVRQVHXQASVHG--MLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMV 808

Query: 61   RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
              FA+    +     +  ++    +RPD +T  F ++AC  +K L   + +H  V + G 
Sbjct: 809  GGFAKVGDYMNCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGL 867

Query: 121  ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
            +    V   L+  Y     IE AR +FD M ERDLV+W  +I  Y +     E+L L+++
Sbjct: 868  DLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDK 927

Query: 181  MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
            MR E V  D   +V ++ +CA +GA++    +        F   V +G A++DM+AKCG 
Sbjct: 928  MREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGC 987

Query: 241  LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
            ++SA  +F RM +++V+SW++MI  YG HG+G +A+  F  ML +G  P+ IT + LL  
Sbjct: 988  VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYA 1047

Query: 301  CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPV 359
            CSH GLVEEG+ +F  M   Y+++  +KHY C+VDL GRAG+L++AL++I + +   D  
Sbjct: 1048 CSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEG 1107

Query: 360  LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
            LW   LG+C+ H++V + E A  +L++L+  + G Y+LL+ IYA     E VA+ R L+ 
Sbjct: 1108 LWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMS 1167

Query: 420  SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
               +K  PGW+WIE+ N+ H+F V D +HP +  IY  L+ + ++ + +GY  D + V  
Sbjct: 1168 QRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVL- 1226

Query: 480  SGSSSEDFLEKSSAY-HSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
                 ++ L+    Y HSEKLAIAFGL  TP+ T +RI+KNLR            S    
Sbjct: 1227 --HDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITG 1284

Query: 527  RDLIVRDRVRYHHFRDGLCSCGDYW 551
            R +IVRD  R+HHF++G CSCGDYW
Sbjct: 1285 RVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 193/524 (36%), Positives = 299/524 (57%), Gaps = 19/524 (3%)

Query: 12  LNKARQAH---EIHGEWLLNS--------YAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           L + RQ H    +HG  +L +        Y  S   +L  A  LF+ +    + +W+ ++
Sbjct: 75  LTQVRQVHAQASVHG--MLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMV 132

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             FA+    +     +  ++    +RPD +T  F ++AC  +K L   + +H  V + G 
Sbjct: 133 GGFAKVGDYINCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGL 191

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           +    V   L+  Y     IE AR +FD M ERDLV+W  +I  Y +     E+L L+E+
Sbjct: 192 DLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEK 251

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           MR E V  D   +V ++ +CA +GA++    +        F   V +G A++DMYAKCG 
Sbjct: 252 MREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGC 311

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           ++SA  +F RM +++V+SW++MI  YG HG+G +A+  F  ML +G  PD IT   LL  
Sbjct: 312 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYA 371

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPV 359
           CSH GLVEEG+ +F  M   Y+++  +KHY C+VDL GRAG+L++AL++I + +   D  
Sbjct: 372 CSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEG 431

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
           LW   LG+C+ H++V + E A  +L++L++ + G YVLL+ IYA     E VA+ R L+ 
Sbjct: 432 LWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMS 491

Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
              +K TPGW+WIE+ N+ H+F V D +HP +  IY  L+ + ++ + +GY  D + V  
Sbjct: 492 QRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVL- 550

Query: 480 SGSSSEDFLEKSSAY-HSEKLAIAFGLATTPDGTSLRIVKNLRS 522
                ++ L+    Y HSEKLAIAFGL  TP+ T +RI+KNLR 
Sbjct: 551 --HDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRE 592



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 152/323 (47%), Gaps = 9/323 (2%)

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
           F + A    + L + +++H      G    +VV+  L+  Y+    ++ A  +FD M  R
Sbjct: 64  FYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVR 123

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           D VSW+ ++  + +   ++     +  +       D +TL  ++ +C  +  L MG  +H
Sbjct: 124 DSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIH 183

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            I  + G     +V  ALVDMY KC  ++ A  +F +M++RD+++W  MI GY   G+ +
Sbjct: 184 HIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKAN 243

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           E++  F++M   G  PD +  + ++  C+  G + +        + R   +  +     +
Sbjct: 244 ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA-RIIDDYIQRKKFQLDVILGTAM 302

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL-VQLEAASA 392
           +D+Y + G +E A E+ +     + + W  ++ +   H     G  A+    + L +   
Sbjct: 303 IDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ---GRKALDLFPMMLSSGML 359

Query: 393 GDYVLLAT-IYACTKD---EEGV 411
            D + LA+ +YAC+     EEG+
Sbjct: 360 PDKITLASLLYACSHAGLVEEGL 382


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/528 (36%), Positives = 302/528 (57%), Gaps = 21/528 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A  LF + + P   A+N++I  +  +     ++  +  ++++      +     TL 
Sbjct: 272 IKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSS-----TLV 326

Query: 98  ACERVKA-LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           +   V   L     +HG+ ++S +     VST L   Y+    IE+AR +FD  PE+ L 
Sbjct: 327 SLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLP 386

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++IS YTQ     +A+ L+  M+  +   +  T+ C+LS+CA +GAL++G ++H + 
Sbjct: 387 SWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLV 446

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
               F  S+YV  AL+ MYAKCG++  A  +F  M K++ ++WN+MI GYG+HG G EA+
Sbjct: 447 RSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEAL 506

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           + F +ML +G  P  +TFL +L  CSH GLV+EG E F+ M+ RY  +P +KHY C+VD+
Sbjct: 507 TIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDI 566

Query: 337 YGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GRAG L++AL+ I        P +W TLLG+C+IH++  +     + L +L+  + G +
Sbjct: 567 LGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYH 626

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ I++  ++    A  R+  K   +   PG++ IEIG   H F   D+SHP    I+
Sbjct: 627 VLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIH 686

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
            KLE++  + +  GY + E+ +A+     E+  E     HSE+LAIAFGL  T  GT +R
Sbjct: 687 EKLEKLEGKMREAGY-QPETELALHDVEEEE-RELMVKVHSERLAIAFGLIATEPGTEIR 744

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           I+KNLR            S    R ++VRD  R+HHF+DG+CSCGDYW
Sbjct: 745 IIKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 172/334 (51%), Gaps = 13/334 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++ YA+ +F  +Q P    +N L+R F+ + SP  ++  + H+  ++  +P++ T+ F +
Sbjct: 67  AIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAI 126

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            A    +       +HG  I  G +  +++ +N+++ Y     +E AR VFD MPE+D +
Sbjct: 127 SAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTI 186

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
            WN++IS Y +   ++E+++++  +  E    LD  TL+ +L + A +  L +G+ +H +
Sbjct: 187 LWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSL 246

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A + G     YV    + +Y+KCG +  A  +F   R+ D++++N+MI GY  +G  + +
Sbjct: 247 ATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELS 306

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY----G 331
           +S FK+++++G    S T + L+    H  L+          +  Y+LK     +     
Sbjct: 307 LSLFKELMLSGAKLKSSTLVSLVPVSGHLMLI--------YAIHGYSLKSNFLSHTSVST 358

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            L  +Y +  ++E A ++ + S       W  ++
Sbjct: 359 ALTTVYSKLNEIESARKLFDESPEKSLPSWNAMI 392


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/534 (38%), Positives = 312/534 (58%), Gaps = 24/534 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAW-NSLIRAFAQSLSP-----LQAIFYYNHMLMASLSRPDTFT 91
           L+YA+ +F+++ +P    W N+L+R +A+S +P       A+  +  ML   ++ PDT+T
Sbjct: 77  LAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVA-PDTYT 135

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           F   LKAC   +A  + ++ H   ++ G      V   L+  YA  G   AAR +F    
Sbjct: 136 FVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTD 195

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
              +VS+N++I+   ++S   EAL L+  M+ + +     T++ +LS+CA +GAL +G +
Sbjct: 196 GGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRW 255

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H    ++G    V V  AL+DMYAKCG+L+ A  VF  M  +D  +W+ MIV Y  HG 
Sbjct: 256 VHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGY 315

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           G EAIS F++M   G  PD ITFLG+L  CSH GLV EG++YF  M   + + PGIKHYG
Sbjct: 316 GREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDM-KDHGIVPGIKHYG 374

Query: 332 CLVDLYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
           C+ DL  R+G+LE+A + I+    +P+ P+LWRTLL +C  H + E+G+   + +++L+ 
Sbjct: 375 CVTDLLARSGQLERAYKFIDELPINPT-PILWRTLLSACGGHGDFELGKRVFERILKLDD 433

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
           +  GDYV+ + + A T   E +   RKL+   G+   PG S IEI N VH+F   D  HP
Sbjct: 434 SHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDGRHP 493

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
            +    + ++E++ + K +GY  + S V       E+    S  YHSEKLAIAFGL  T 
Sbjct: 494 KSQEARKMVDEVIDQLKLVGYVPNTSHV-FHVEMGEEEKAISLKYHSEKLAIAFGLLNTA 552

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            G +LR+VKNLR            S+ ++R +I+RD  R+HHF +G+CSCGDYW
Sbjct: 553 PGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 26/218 (11%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A  +F  +++   QAW+ +I A+A      +AI  +  M    + +PD  TF   L
Sbjct: 284 SLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGM-KPDDITFLGVL 342

Query: 97  KAC-------ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
            AC       E ++  +  ++ HG V    +  CV   T+L+   A +G +E A    D 
Sbjct: 343 YACSHSGLVSEGLQYFDDMKD-HGIVPGIKHYGCV---TDLL---ARSGQLERAYKFIDE 395

Query: 150 MP-ERDLVSWNSIIS-CYTQASFHLEALKLYER-MRFEDVGLDGFTLVCLLSSCAHVGAL 206
           +P     + W +++S C     F L   +++ER ++ +D    G   V   + CA+ G  
Sbjct: 396 LPINPTPILWRTLLSACGGHGDFEL-GKRVFERILKLDDS--HGGDYVIFSNLCANTGYW 452

Query: 207 NMGIFLHRIACEMGFVE-----SVYVGNALVDMYAKCG 239
                + ++  E G V+     S+ + N + + +A  G
Sbjct: 453 EEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDG 490


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/534 (37%), Positives = 307/534 (57%), Gaps = 29/534 (5%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+ + + +   WN++I  ++Q+    +A+  +  M  ++    ++ T    + AC R  
Sbjct: 273 VFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 332

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           A ++ + +HGFV++ G +R   V   LM  Y+  G I+ A  +F  M +RDLV+WN++I+
Sbjct: 333 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMIT 392

Query: 164 CYTQASFHLEALKLYERMRFED-----------VGLDGFTLVCLLSSCAHVGALNMGIFL 212
            Y  +  H +AL L  +M+  +           +  +  TL+ +L SCA + AL  G  +
Sbjct: 393 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 452

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H  A +      V VG+ALVDMYAKCG L  +  VF ++ +++V++WN +I+ YG+HG G
Sbjct: 453 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 512

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EAI   + M++ G  P+ +TF+ +   CSH G+V+EG+  F++M   Y ++P   HY C
Sbjct: 513 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 572

Query: 333 LVDLYGRAGKLEKALEVINTSSPSD---PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
           +VDL GRAG++++A +++N   P D      W +LLG+ +IH N+EIGEIA +NL+QLE 
Sbjct: 573 VVDLLGRAGRIKEAYQLMNM-MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEP 631

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
             A  YVLLA IY+     +     R+ +K  G++  PG SWIE G++VHKFV  D SHP
Sbjct: 632 NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 691

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
            ++ +   LE +  R +  GY  D S V    +  ED  E     HSEKLAIAFG+  T 
Sbjct: 692 QSEKLSGYLETLWERMRKEGYVPDTSCVL--HNVEEDEKEILLCGHSEKLAIAFGILNTS 749

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            GT +R+ KNLR            S    R++I+RD  R+H F++G CSCGDYW
Sbjct: 750 PGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 157/327 (48%), Gaps = 8/327 (2%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV- 102
           +F++I      +WNSLI +         A+  +  ML  ++  P +FT    + AC  + 
Sbjct: 68  VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV-EPSSFTLVSVVTACSNLP 126

Query: 103 --KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             + L   +++H + +R G     +++T L+  Y   G + +++ +  +   RDLV+WN+
Sbjct: 127 MPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 185

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++S   Q    LEAL+    M  E V  D FT+  +L +C+H+  L  G  LH  A + G
Sbjct: 186 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 245

Query: 221 FV-ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
            + E+ +VG+ALVDMY  C  + S   VF  M  R +  WN+MI GY  +    EA+  F
Sbjct: 246 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 305

Query: 280 KQM-LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
             M   AG   +S T  G++  C   G      E  H  V +  L         L+D+Y 
Sbjct: 306 IGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMYS 364

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL 365
           R GK++ A+ +       D V W T++
Sbjct: 365 RLGKIDIAMRIFGKMEDRDLVTWNTMI 391



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 133/285 (46%), Gaps = 5/285 (1%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE-RCVVVSTNLMRGYAANGVIEAAR 144
           +PD + F   LKA   ++ +   +++H  V + GY    V V+  L+  Y   G   A  
Sbjct: 7   KPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVY 66

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VFD + ER+ VSWNS+IS          AL+ +  M  E+V    FTLV ++++C+++ 
Sbjct: 67  KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 126

Query: 205 ---ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
               L MG  +H      G + S ++ N LV MY K G L S+  +      RD+++WN+
Sbjct: 127 MPEGLMMGKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 185

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           ++     + +  EA+ + ++M++ G  PD  T   +L  CSH  ++  G E     +   
Sbjct: 186 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 245

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           +L         LVD+Y    ++     V +        LW  ++ 
Sbjct: 246 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 290



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 122/242 (50%), Gaps = 11/242 (4%)

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF-VESVYVGNALVDMYAKCGNLDSAFCV 247
           D +    LL + A +  + +G  +H    + G+ V+SV V N LV++Y KCG+  + + V
Sbjct: 9   DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 68

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F R+ +R+ +SWNS+I       + + A+  F+ ML     P S T + ++  CS+  + 
Sbjct: 69  FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM- 127

Query: 308 EEGVEYFHMMVSRYNLKPGIKH---YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364
            EG+      V  Y L+ G  +      LV +YG+ GKL  +  ++ +    D V W T+
Sbjct: 128 PEGL-MMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTV 186

Query: 365 LGS-CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           L S C+  + +E  E  ++ +V LE     ++ + + + AC+  E  + RT K + +  +
Sbjct: 187 LSSLCQNEQLLEALEY-LREMV-LEGVEPDEFTISSVLPACSHLE--MLRTGKELHAYAL 242

Query: 424 KT 425
           K 
Sbjct: 243 KN 244


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/526 (37%), Positives = 308/526 (58%), Gaps = 18/526 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  +F++I      +WN+ I  +A++ +  +A+  +  M+  ++ RPD  T    L AC 
Sbjct: 188 AHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNV-RPDESTMVTVLSACA 246

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +  ++   +++H ++   G+   + +   L+  Y+  G +E A  +F  +  +D++SWN+
Sbjct: 247 QSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNT 306

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE-- 218
           +I  YT  + + EAL L++ M       +  T++ +LS+CAH+GA+++G ++H    +  
Sbjct: 307 LIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRL 366

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
            G   +  +  +L+DMYAKCG++++A  VF  M  R + SWN+MI G+ +HGR + A   
Sbjct: 367 KGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDI 426

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M   G  PD ITF+GLL  CSH G+++ G   F  M   Y L P ++HYGC++DL G
Sbjct: 427 FSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXG 486

Query: 339 RAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
            +G  ++A ++INT     D V+W +LL +CK+H NVE+GE   +NL+++E  + G YVL
Sbjct: 487 HSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVL 546

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ IYA  +    VA+TR L+   G+K  PG S IEI + VH+F++ DK HP    IY  
Sbjct: 547 LSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 606

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           LEE+    +  G+  D S   V     E++ E +  +HSEKLAIAFGL +T  GT L IV
Sbjct: 607 LEEMEVLLEEAGFVPDTS--EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S  Y R++I RDR R+HHFRDG CSC DYW
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 198/369 (53%), Gaps = 39/369 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA  +F+ IQ P    WN++ R  A S  P+ A+  Y  M+   L  P+++TF F LK
Sbjct: 53  LPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGL-LPNSYTFPFLLK 111

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           +C +  A  + Q+LHG V++ G++                               R VV 
Sbjct: 112 SCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVS 171

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L+ GYA+ G IE+A  +FD +P +D+VSWN+ IS Y +   + EAL+L+++M   +V
Sbjct: 172 YTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNV 231

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T+V +LS+CA  G++ +G  +H    + GF  ++ + NAL+D+Y+KCG L++A  
Sbjct: 232 RPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACG 291

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F  +  +DV+SWN++I GY       EA+  F+ ML +G  P+ +T L +L  C+H G 
Sbjct: 292 LFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGA 351

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYG----CLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           ++ G  + H+ + +  LK G+ +       L+D+Y + G +E A +V ++        W 
Sbjct: 352 IDIG-RWIHVYIDK-RLK-GVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWN 408

Query: 363 TLLGSCKIH 371
            ++    +H
Sbjct: 409 AMIFGFAMH 417



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 142/336 (42%), Gaps = 36/336 (10%)

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA---ARSVFDNMPERDLVSWN 159
           K L   + +H  +I++G        + L+     +   +    A SVFD + E  L+ WN
Sbjct: 13  KTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWN 72

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++   +  +S  + ALKLY  M    +  + +T   LL SCA   A   G  LH    + 
Sbjct: 73  TMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKF 132

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD------ 273
           GF   +Y+  +L+ MY + G L+ A  V  +   RDV+S+ ++I GY   G  +      
Sbjct: 133 GFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMF 192

Query: 274 -------------------------EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
                                    EA+  FK+M+     PD  T + +L  C+  G +E
Sbjct: 193 DEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIE 252

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            G +  H  ++ +     +K    L+DLY + G+LE A  +    S  D + W TL+G  
Sbjct: 253 LGRQ-VHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGG- 310

Query: 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
             H N+    + +   +        D  +L+ + AC
Sbjct: 311 YTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSAC 346


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/529 (39%), Positives = 298/529 (56%), Gaps = 19/529 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  AQL+F+++       WN++I   AQ     +A+  +  M       PD  TF   L
Sbjct: 385 SIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFF-PDATTFVNIL 443

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            A    +AL   +E+H + I +G    + V   L+  YA  G    A+ VFD+M ER++ 
Sbjct: 444 SANVGEEALEWVKEVHSYAIDAGLVD-LRVGNALVHMYAKCGNTMYAKQVFDDMVERNVT 502

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           +W  +IS   Q     EA  L+ +M  E +  D  T V +LS+CA  GAL     +H  A
Sbjct: 503 TWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHA 562

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              G V  + VGNALV MYAKCG++D A  VF  M +RDV SW  MI G   HGRG +A+
Sbjct: 563 VNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDAL 622

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F +M + GF P+  +F+ +L  CSH GLV+EG   F  +   Y ++P ++HY C+VDL
Sbjct: 623 DLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDL 682

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG+LE+A   I  + P +P    W  LLG+C  + N+E+ E A K  ++L+  SA  
Sbjct: 683 LGRAGQLEEAKHFI-LNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSAST 741

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ IYA T + E     R +++  GI+  PG SWIE+ NQ+H FVV D SHP++  I
Sbjct: 742 YVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEI 801

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y KL++++ R K  GY  D  LV    ++ +++ E++   HSEKLAI +GL  TP    +
Sbjct: 802 YAKLKDLIKRLKAEGYVPDTRLVLR--NTDQEYKEQALCSHSEKLAIVYGLMHTPYRNPI 859

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+ KNLR            S    R+++ RD  R+HHF+DG+CSCGDYW
Sbjct: 860 RVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 142/283 (50%), Gaps = 3/283 (1%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +P+  T+   LKAC    +L   +++H  +I+SG++  V V T L+  Y   G I+ A+ 
Sbjct: 27  QPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQL 86

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD M ER+++SW  +I          EA   + +M+ E    + +T V +L++ A  GA
Sbjct: 87  IFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGA 146

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L     +H  A   G    + VGNALV MYAK G++D A  VF  M +RD+ SW  MI G
Sbjct: 147 LEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGG 206

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL--CGCSHQGLVEEGVEYFHMMVSRYNL 323
              HGRG EA S F QM   G  P+  T+L +L     +  G + E V+  H    +   
Sbjct: 207 LAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGAL-EWVKEVHKHAGKAGF 265

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
              ++    L+ +Y + G ++ A  V +     D + W  ++G
Sbjct: 266 ISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIG 308



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 200/446 (44%), Gaps = 22/446 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA   S S+  A+++F+ +      +W  +I   AQ     +A   +  M   
Sbjct: 169 GNALVHMYA--KSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERG 226

Query: 83  S-LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
             L    T+       A     AL   +E+H    ++G+   + V   L+  YA  G I+
Sbjct: 227 GCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSID 286

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            AR VFD M +RD++SWN++I    Q     EA  ++ +M+ E    D  T + LL++  
Sbjct: 287 DARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHV 346

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
             GA      +H+ A E+G V  + VG+A V MY +CG++D A  +F ++  R+V +WN+
Sbjct: 347 STGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNA 406

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI G      G EA+S F QM   GF PD+ TF+ +L       + EE +E+    V  Y
Sbjct: 407 MIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA----NVGEEALEWVK-EVHSY 461

Query: 322 NLKPG---IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR-NVEIG 377
            +  G   ++    LV +Y + G    A +V +     +   W  ++     H    E  
Sbjct: 462 AIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAF 521

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
            + ++ L +     A  YV + +  A T   E V        + G+ +      + +GN 
Sbjct: 522 SLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSD-----LRVGNA 576

Query: 438 -VHKFV----VDDKSHPDADMIYRKL 458
            VH +     VDD      DM+ R +
Sbjct: 577 LVHMYAKCGSVDDARRVFDDMLERDV 602



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 4/228 (1%)

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I  Y +  +  +A+K+Y +MR E    +  T + +L +C    +L  G  +H    + G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F   V V  ALV+MY KCG++D A  +F +M +R+V+SW  MI G   +GRG EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QM   GF P+S T++ +L   +  G + E V+  H       L   ++    LV +Y ++
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGAL-EWVKEVHSHAVNAGLALDLRVGNALVHMYAKS 179

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
           G ++ A  V +     D   W  ++G    H     G+ A    +Q+E
Sbjct: 180 GSIDDARVVFDGMVERDIFSWTVMIGGLAQHGR---GQEAFSLFLQME 224


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/560 (35%), Positives = 325/560 (58%), Gaps = 31/560 (5%)

Query: 19  HEIHGEWLLNSYAIS------------VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS 66
           H++H   +++ Y  S             + S+SY + +F  + NP +  + SLIR+ ++ 
Sbjct: 29  HQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKF 88

Query: 67  LS-PLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV 125
            +  + ++++Y  M++++++ P  +TFT  +K+C  + AL   + +HG V+ +G+   V 
Sbjct: 89  HNFSVYSLYFYTRMVLSNVA-PSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVY 147

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           V T LM  Y   GV+  AR VFD M +R +V+WNS+IS Y Q  F  EA++L++RM+   
Sbjct: 148 VQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIG 207

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           V  +  T V +LS+CAH+GA  +G ++H  A   G   +V +G +L++MY +CGN+  A 
Sbjct: 208 VEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAR 267

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  M++R+V++W +MI GYG +G G +A+  F +M   G  P+SITF+ +L  C+H G
Sbjct: 268 EVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAG 327

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTL 364
           LV EG   F  M   Y L P ++H+ CLVD+ GRAG L++A   I        P +W  +
Sbjct: 328 LVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAM 387

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
           LG+CK+H+N  +G    ++ +  E  +   YV+L+ IYA     + V   R  +    +K
Sbjct: 388 LGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLK 447

Query: 425 TTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY-TKDESLVAVSGSS 483
              G+S I++  + + F + DKSH + + IY  L+++M + +  GY T  +S++      
Sbjct: 448 KQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMHELEEE 507

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIV 531
             ++   +  YHSEKLAIAFGL  T  GT +RIVKNLR            S+  +R++IV
Sbjct: 508 EREY---ALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVISNREIIV 564

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RD++R+HHF++G CSC DYW
Sbjct: 565 RDKLRFHHFKNGSCSCLDYW 584



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 5/280 (1%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P +  +   L+A  R+K L    ++H  VI SGY     + T L+    A G I   R +
Sbjct: 10  PHSPAYNLLLQAGPRLKLL---HQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQI 66

Query: 147 FDNMPERDLVSWNSIISCYTQ-ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           F  +P  D   + S+I   ++  +F + +L  Y RM   +V    +T   ++ SCA + A
Sbjct: 67  FLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVA 126

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H      GF   VYV  AL+  Y KCG L +A  VF +MR R V++WNSMI G
Sbjct: 127 LRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISG 186

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y  +G   EAI  F +M   G  P+S TF+ +L  C+H G    G  + H       L  
Sbjct: 187 YEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGC-WVHEYAVGNGLDL 245

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +     L+++Y R G + KA EV ++    + V W  ++
Sbjct: 246 NVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMI 285


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/563 (37%), Positives = 315/563 (55%), Gaps = 55/563 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ AQ  F Q+       WNS+I  + Q    L+A+  ++ ML  S+  PD FT    L 
Sbjct: 230 LAMAQ--FEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLS 287

Query: 98  ACERVKALNKCQELHGFVIRSG--------------YERCVVVSTN-------------- 129
           AC  ++ L   +++H  ++ +G              Y RC  V T               
Sbjct: 288 ACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKI 347

Query: 130 -----LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
                L+ GY   G +  A+++FD++ +RD+V+W ++I  Y Q   + EA+ L+  M  E
Sbjct: 348 EGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGE 407

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
           +   + +TL  +LS  + + +L  G  +H  A + G + SV V NAL+ MYAK G++ SA
Sbjct: 408 EQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSA 467

Query: 245 FCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
              F  +R +RD +SW SMI+    HG  +EA+  F+ MLM G  PD IT++G+   C+H
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTH 527

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
            GLV +G +YF MM     + P + HY C+VDL+GRAG L++A E I    P +P  V W
Sbjct: 528 AGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIE-KMPIEPDVVTW 586

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY-ACTKDEEGVARTRKLIKS 420
            +LL +C++++N+++G++A + L+ LE  ++G Y  LA +Y AC K EE  A+ RK +K 
Sbjct: 587 GSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEA-AKIRKSMKD 645

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
             +K   G+SWIE+ ++VH F V+D  HP  + IY  +++I    K +GY  D +  +V 
Sbjct: 646 GRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTA--SVL 703

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
               E+  E+   +HSEKLAIAFGL +TPD T+LRI+KNLR            S    R+
Sbjct: 704 HDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGRE 763

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +IVRD  R+HHF+DG CSC DYW
Sbjct: 764 IIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 165/398 (41%), Gaps = 68/398 (17%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
            F+++    + +W ++I  +       +AI     M+   +  P  FT T  L +    +
Sbjct: 102 FFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGI-EPSQFTLTNVLASVAATR 160

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW----- 158
            L   +++H F+++ G    V VS +L+  YA  G    A+ VFD M  +D+ SW     
Sbjct: 161 CLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIA 220

Query: 159 --------------------------NSIISCYTQASFHLEALKLYERM-RFEDVGLDGF 191
                                     NS+IS Y Q  + L AL ++ +M R   +  D F
Sbjct: 221 LHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRF 280

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC------------- 238
           TL  +LS+CA++  L +G  +H      GF  S  V NAL+ MY++C             
Sbjct: 281 TLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQR 340

Query: 239 --------------------GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
                               G+++ A  +F  ++ RDV++W +MIVGY  HG   EAI+ 
Sbjct: 341 GTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINL 400

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F+ M+     P+S T   +L   S    +  G +  H    +      +     L+ +Y 
Sbjct: 401 FRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQ-IHGSAVKSGEIYSVSVSNALITMYA 459

Query: 339 RAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVE 375
           +AG +  A    +      D V W +++ +   H + E
Sbjct: 460 KAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAE 497



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 145/347 (41%), Gaps = 76/347 (21%)

Query: 84  LSRPDTFTFTFTLKACERV--KALNK------CQELHGFVIRSGYERCVVVSTNLMRGYA 135
           +  P   + +  L+ C  +  K++NK       Q +H  VI+SG    V +  NLM  Y+
Sbjct: 1   MDAPVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYS 60

Query: 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQ---------------------------- 167
             G    AR +FD MP R   SWN+++S Y +                            
Sbjct: 61  KTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVG 120

Query: 168 ----ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
                 +H +A+++   M  E +    FTL  +L+S A    L  G  +H    ++G   
Sbjct: 121 YKNIGQYH-KAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRG 179

Query: 224 SVYVGNALVDMYAKCGN-------------------------------LDSAFCVFSRMR 252
           +V V N+L++MYAKCG+                               +D A   F +M 
Sbjct: 180 NVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMA 239

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGV 311
           +RD+++WNSMI GY   G    A+  F +ML  +   PD  T   +L  C++   +  G 
Sbjct: 240 ERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGE 299

Query: 312 E-YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           + + H++ + +++   +     L+ +Y R G +E A  +I      D
Sbjct: 300 QIHSHIVTTGFDISGIV--LNALISMYSRCGGVETARRLIEQRGTKD 344



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
           + + +  N ++  YAK G++DS+   F R+ +RD +SW +MIVGY   G+  +AI    +
Sbjct: 77  LRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGE 136

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           M+  G  P   T   +L   +    +E G +  H  + +  L+  +     L+++Y + G
Sbjct: 137 MMREGIEPSQFTLTNVLASVAATRCLETG-KKVHSFIVKLGLRGNVSVSNSLLNMYAKCG 195

Query: 342 KLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
               A  V +     D   W  ++    +H  V   ++AM    Q+
Sbjct: 196 DPMMAKVVFDRMVVKDISSWNAMIA---LHMQVGQMDLAMAQFEQM 238


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/511 (38%), Positives = 297/511 (58%), Gaps = 21/511 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W ++I  + Q+    +A+  +  M    + RP+ FT++  L A   V       ++H  
Sbjct: 363 SWTAIISGYVQNGRTDRAMNLFCQMRREGV-RPNHFTYSTILTANAAVSP----SQIHAL 417

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           V+++ YE    V T L   Y+  G    A  +F+ + E+D+V+W++++S Y Q      A
Sbjct: 418 VVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGA 477

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCA-HVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           +K++ ++  E V  + FT   +L++CA    ++  G   H  + + GF  ++ V +ALV 
Sbjct: 478 VKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVT 537

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MYAK GN++SA  VF R   RD++SWNSMI GY  HG G +++  F++M       D IT
Sbjct: 538 MYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGIT 597

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F+G++  C+H GLV EG  YF +MV  Y++ P ++HY C+VDLY RAG LEKA+++IN  
Sbjct: 598 FIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKM 657

Query: 354 S-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
             P+   +WRTLL +C++H NV++GE+A + L+ L+   +  YVLL+ IYA   + +  A
Sbjct: 658 PFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERA 717

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           + RKL+    +K   G+SWIE+ N+   F+  D SHP +D IY KLEE+  R K  GY  
Sbjct: 718 KVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYP 777

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           D   V       E+  E   + HSE+LAIAFGL  TP GT ++IVKNLR           
Sbjct: 778 DTKYVL--HDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKL 835

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S    RD++VRD  R+HHF+ G CSCGDYW
Sbjct: 836 ISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 186/388 (47%), Gaps = 16/388 (4%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           + S+   + +F++++     +W SL+  + Q+    QA+  ++ M +  + +P+ FTF  
Sbjct: 140 TESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGI-KPNPFTFAA 198

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L       A+ K  ++H  VI+SG +  + V  +++  Y+ + ++  A++VFD+M  R+
Sbjct: 199 VLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRN 258

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            VSWNS+I+ +      LEA +L+ RMR E V L       ++  CA++  ++    LH 
Sbjct: 259 AVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHC 318

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-RDVLSWNSMIVGYGVHGRGD 273
              + G    + +  AL+  Y+KC  +D AF +F  M   ++V+SW ++I GY  +GR D
Sbjct: 319 QVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTD 378

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
            A++ F QM   G  P+  T+  +L   +     +      H +V + N +        L
Sbjct: 379 RAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQ-----IHALVVKTNYENSPSVGTAL 433

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEI--AMKNLVQL--EA 389
            D Y + G   +A ++       D V W  +L         ++G+I  A+K  +QL  E 
Sbjct: 434 SDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSG-----YAQMGDIEGAVKIFLQLAKEG 488

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKL 417
               ++   + + AC      V + ++ 
Sbjct: 489 VEPNEFTFSSVLNACAAPTASVEQGKQF 516



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 134/264 (50%), Gaps = 1/264 (0%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           ++Q LF++         N L+  F+++    +A+  +   L  S S  D  + +  LK C
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLG-LRRSGSPTDGSSLSCVLKVC 102

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
             +      +++H   I+ G+   V V T+L+  Y     +E    VFD M  +++VSW 
Sbjct: 103 GCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           S+++ Y Q   + +ALKL+ +M+ E +  + FT   +L   A  GA+  G+ +H +  + 
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS 222

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G   +++VGN++V+MY+K   +  A  VF  M  R+ +SWNSMI G+  +G   EA   F
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 280 KQMLMAGFHPDSITFLGLLCGCSH 303
            +M + G       F  ++  C++
Sbjct: 283 YRMRLEGVKLTQTIFATVIKLCAN 306



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 119/224 (53%), Gaps = 1/224 (0%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           ++ +FD  P++ L   N ++  +++   + EAL L+  +R      DG +L C+L  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +    +G  +H    + GFVE V VG +LVDMY K  +++    VF  MR ++V+SW S+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           + GY  +G  ++A+  F QM + G  P+  TF  +L G +  G VE+GV+  H MV +  
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           L   I     +V++Y ++  +  A  V ++    + V W +++ 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIA 267


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/563 (39%), Positives = 319/563 (56%), Gaps = 55/563 (9%)

Query: 41  AQLLFNQIQNPQT--QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR---PDTFTFTFT 95
           A++LF+   +P    + WN +IR +++  +  + I  +  ML         PD +TFTF 
Sbjct: 125 ARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFV 184

Query: 96  LKACERVKALNKCQELHGFVIRSGYE-------------------------------RCV 124
           + +C    +L   + +HG V++SG+E                               R V
Sbjct: 185 ITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDV 244

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
              T+L+ GYA +G ++ A  +F+ MP R+ VSW  +IS +     + EAL  +  M  +
Sbjct: 245 FSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCD 304

Query: 185 D-VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           D V  +   LVC+LS+CAH+GAL+ G ++H    ++G  +S  +  AL+DMYAKCG +D 
Sbjct: 305 DRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDC 364

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  VF+ + KRDVLS+ SMI G   HG G +A+  F QML     P+ IT LG+L GCSH
Sbjct: 365 ASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSH 424

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
            GLVEEG      M S + + P I+HYGC +DL GRAG LE+ALEV+ T  P +P  V+W
Sbjct: 425 SGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKT-MPMEPDIVIW 483

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAAS-AGDYVLLATIYACTKDEEGVARTRKLIKS 420
           R LL + +IH NV +GE  + ++ QL+++   G  VLL+ +YA     E V   RKL+  
Sbjct: 484 RALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVD 543

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
              +++PG SWIE+   VH+F V D+ HP    I  KL EI+ R   IGY+ +   + VS
Sbjct: 544 RRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANT--MQVS 601

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
              +E+  E++ A+HSEKLAIAFGL +T  GT +RIVKNLR            S  Y R+
Sbjct: 602 FDLNEEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGRE 661

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           ++VRDR R+H F +G CSC D+W
Sbjct: 662 IVVRDRSRFHTFIEGDCSCKDFW 684



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 168/361 (46%), Gaps = 48/361 (13%)

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
           TF+L   +R K L+  Q++H  V+         ++ +L+  Y        AR +FD+ P 
Sbjct: 76  TFSLLLNQRPK-LSPLQQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDHYPS 134

Query: 153 RD--LVSWNSIISCYTQASFHLEALKLYERMRFED----VGLDGFTLVCLLSSCAHVGAL 206
               +  WN +I  Y++     E + L+ RM   D    V  D +T   +++SC+H  +L
Sbjct: 135 PSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISL 194

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
             G  +H +  + GF  ++YVGN++++M +    ++ A  VF++M +RDV SW S++ GY
Sbjct: 195 IYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGY 254

Query: 267 GVHGRGDEAISFFKQM----------LMAGF-----HPDSITFL-GLLC----------- 299
             HG  D A   F  M          +++GF     +P+++TF   +LC           
Sbjct: 255 AKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVL 314

Query: 300 -----GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
                 C+H G +++G  + H+ + +  ++        L+D+Y + G+++ A  V N   
Sbjct: 315 VCVLSACAHLGALDQG-NWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGIC 373

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLATIYACTKD---EE 409
             D + + +++     H    +G+ A++   Q+  E     +  +L  +  C+     EE
Sbjct: 374 KRDVLSFTSMISGLSYH---GLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEE 430

Query: 410 G 410
           G
Sbjct: 431 G 431


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/534 (37%), Positives = 307/534 (57%), Gaps = 29/534 (5%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+ + + +   WN++I  ++Q+    +A+  +  M  ++    ++ T    + AC R  
Sbjct: 360 VFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           A ++ + +HGFV++ G +R   V   LM  Y+  G I+ A  +F  M +RDLV+WN++I+
Sbjct: 420 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMIT 479

Query: 164 CYTQASFHLEALKLYERMRFED-----------VGLDGFTLVCLLSSCAHVGALNMGIFL 212
            Y  +  H +AL L  +M+  +           +  +  TL+ +L SCA + AL  G  +
Sbjct: 480 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 539

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H  A +      V VG+ALVDMYAKCG L  +  VF ++ +++V++WN +I+ YG+HG G
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EAI   + M++ G  P+ +TF+ +   CSH G+V+EG+  F++M   Y ++P   HY C
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659

Query: 333 LVDLYGRAGKLEKALEVINTSSPSD---PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
           +VDL GRAG++++A +++N   P D      W +LLG+ +IH N+EIGEIA +NL+QLE 
Sbjct: 660 VVDLLGRAGRIKEAYQLMNM-MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEP 718

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
             A  YVLLA IY+     +     R+ +K  G++  PG SWIE G++VHKFV  D SHP
Sbjct: 719 NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 778

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
            ++ +   LE +  R +  GY  D S V    +  ED  E     HSEKLAIAFG+  T 
Sbjct: 779 QSEKLSGYLETLWERMRKEGYVPDTSCVL--HNVEEDEKEILLCGHSEKLAIAFGILNTS 836

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            GT +R+ KNLR            S    R++I+RD  R+H F++G CSCGDYW
Sbjct: 837 PGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 157/327 (48%), Gaps = 8/327 (2%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV- 102
           +F++I      +WNSLI +         A+  +  ML  ++  P +FT    + AC  + 
Sbjct: 155 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV-EPSSFTLVSVVTACSNLP 213

Query: 103 --KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             + L   +++H + +R G     +++T L+  Y   G + +++ +  +   RDLV+WN+
Sbjct: 214 MPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++S   Q    LEAL+    M  E V  D FT+  +L +C+H+  L  G  LH  A + G
Sbjct: 273 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332

Query: 221 FV-ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
            + E+ +VG+ALVDMY  C  + S   VF  M  R +  WN+MI GY  +    EA+  F
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 280 KQM-LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
             M   AG   +S T  G++  C   G      E  H  V +  L         L+D+Y 
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMYS 451

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL 365
           R GK++ A+ +       D V W T++
Sbjct: 452 RLGKIDIAMRIFGKMEDRDLVTWNTMI 478



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 155/309 (50%), Gaps = 9/309 (2%)

Query: 34  VSSSLSYAQLLF-NQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           V+S++S A  +F +Q ++P+   W  L+R+  +S    +A+  Y  M++  + +PD + F
Sbjct: 44  VASAVSGAPSIFISQSRSPEW--WIDLLRSKVRSNLLREAVLTYVDMIVLGI-KPDNYAF 100

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYE-RCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
              LKA   ++ +   +++H  V + GY    V V+  L+  Y   G   A   VFD + 
Sbjct: 101 PALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRIS 160

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG---ALNM 208
           ER+ VSWNS+IS          AL+ +  M  E+V    FTLV ++++C+++     L M
Sbjct: 161 ERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMM 220

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G  +H      G + S ++ N LV MY K G L S+  +      RD+++WN+++     
Sbjct: 221 GKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           + +  EA+ + ++M++ G  PD  T   +L  CSH  ++  G E     +   +L     
Sbjct: 280 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 339

Query: 329 HYGCLVDLY 337
               LVD+Y
Sbjct: 340 VGSALVDMY 348



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 141/291 (48%), Gaps = 12/291 (4%)

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           +  A S+F +   R    W  ++    +++   EA+  Y  M    +  D +    LL +
Sbjct: 48  VSGAPSIFISQ-SRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKA 106

Query: 200 CAHVGALNMGIFLHRIACEMGF-VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
            A +  + +G  +H    + G+ V+SV V N LV++Y KCG+  + + VF R+ +R+ +S
Sbjct: 107 VADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS 166

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WNS+I       + + A+  F+ ML     P S T + ++  CS+  +  EG+      V
Sbjct: 167 WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGL-MMGKQV 224

Query: 319 SRYNLKPGIKH---YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS-CKIHRNV 374
             Y L+ G  +      LV +YG+ GKL  +  ++ +    D V W T+L S C+  + +
Sbjct: 225 HAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLL 284

Query: 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
           E  E  ++ +V LE     ++ + + + AC+  E  + RT K + +  +K 
Sbjct: 285 EALEY-LREMV-LEGVEPDEFTISSVLPACSHLE--MLRTGKELHAYALKN 331


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/586 (35%), Positives = 312/586 (53%), Gaps = 54/586 (9%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVS-----SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS 66
           +  AR+  E   +W L S+   +      + L  A+ +F+++      +WN++I  +AQ+
Sbjct: 189 IEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQN 248

Query: 67  -----------LSPLQAIFYYNHMLMA---------------SLSRPDTFTFTFTLKACE 100
                       SP++ +F +  M+                  +   ++ ++   +    
Sbjct: 249 GELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYV 308

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVST--NLMRGYAANGVIEAARSVFDNMPERDLVSW 158
           + K +++ +EL   +       C  VS+   ++ GYA NG I  AR+ FD MP+RD +SW
Sbjct: 309 QCKRMDQARELFEAMP------CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISW 362

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218
            +II+ Y Q+ +  EAL L+  M+ +   L+  T    LS+CA + AL +G  +H    +
Sbjct: 363 AAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVK 422

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
            G     YVGNAL+ MY KCGN+D A+ VF  + +++V+SWN+MI GY  HG G EA+  
Sbjct: 423 AGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALML 482

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F+ M   G  PD +T +G+L  CSH GLV++G EYF+ M   Y +    KHY C++DL G
Sbjct: 483 FESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLG 542

Query: 339 RAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
           RAG+L+ A  ++ N     D   W  LLG+ +IH N E+GE A K + ++E  ++G YVL
Sbjct: 543 RAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVL 602

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ +YA +     V R R  ++  G+K  PG+SW+E+ N++H F V D  HP+ D IY  
Sbjct: 603 LSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTF 662

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           LEE+  + K  GY     LV       E        YHSEKLA+AFG+   P G  +R++
Sbjct: 663 LEELDLKMKKEGYVSSTKLVLHDVEEEEKV--HMLKYHSEKLAVAFGILAIPAGRPIRVI 720

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S    R +I+RD  R+HHF  G CSCGDYW
Sbjct: 721 KNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 170/390 (43%), Gaps = 48/390 (12%)

Query: 15  ARQAHEIHGEWLLNSYAISVSSSLSY-----AQLLFNQIQNPQTQAWNSLIRAFAQSLSP 69
           ARQ  E      L S+ + +S  + Y     A+LLF+Q+      +WN+++  +AQ+   
Sbjct: 99  ARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYV 158

Query: 70  LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN 129
            +A   ++ M        ++ ++   L A  +   +   + L  F  ++ +E   ++S N
Sbjct: 159 KEAKEIFDEMPC-----KNSISWNGMLAAYVQNGRIEDARRL--FESKADWE---LISWN 208

Query: 130 -LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188
            +M GY     +  AR +FD MPERD VSWN++IS Y Q    LEA +L+E     DV  
Sbjct: 209 CMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV-- 266

Query: 189 DGFTLVCLLSSCAHVGALNM-----------------GIFLHRIAC----------EMGF 221
             FT   ++S     G L+                   I    + C          E   
Sbjct: 267 --FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMP 324

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
            ++V   N ++  YA+ G++  A   F RM +RD +SW ++I GY   G G+EA+  F +
Sbjct: 325 CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVE 384

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           M   G   +  TF   L  C+    +E G +  H  V +  L+ G      L+ +Y + G
Sbjct: 385 MKRDGERLNRSTFTSTLSTCAEIAALELGKQ-VHGRVVKAGLESGCYVGNALLVMYCKCG 443

Query: 342 KLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            ++ A  V       + V W T++     H
Sbjct: 444 NIDDAYIVFEGIEEKEVVSWNTMIAGYARH 473



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 142/333 (42%), Gaps = 49/333 (14%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LFN +    + +WN++I     +       FY    L   +   D  ++   +  C R +
Sbjct: 71  LFNSMPRRSSISWNAMISGCLSNDK-----FYLARQLFEKMPTRDLVSWNVMISGCVRYR 125

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L   + L   +     ER VV    ++ GYA NG ++ A+ +FD MP ++ +SWN +++
Sbjct: 126 NLRAARLLFDQMP----ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLA 181

Query: 164 CYTQASFHLEALKLYE-------------------RMRFEDV-GL-------DGFTLVCL 196
            Y Q     +A +L+E                   R R  D  G+       D  +   +
Sbjct: 182 AYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTM 241

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           +S  A  G L   +   R+  E   V  V+   A+V  Y + G LD A  VF  M +++ 
Sbjct: 242 ISGYAQNGEL---LEAQRL-FEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS 297

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           +SWN++I GY    R D+A   F+ M          ++  ++ G +  G + +   +F  
Sbjct: 298 VSWNAIIAGYVQCKRMDQARELFEAMPCQNVS----SWNTMITGYAQNGDIAQARNFFDR 353

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           M  R ++      +  ++  Y ++G  E+AL +
Sbjct: 354 MPQRDSIS-----WAAIIAGYAQSGYGEEALHL 381



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 54/242 (22%)

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS-CYTQASFHLEALKLYERMRF 183
           +  TN MR    NG  ++A  +F++MP R  +SWN++IS C +   F+L A +L+E+M  
Sbjct: 54  IAITNHMR----NGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYL-ARQLFEKMPT 108

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
            D+     +   ++S C                                    +  NL +
Sbjct: 109 RDL----VSWNVMISGC-----------------------------------VRYRNLRA 129

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F +M +RDV+SWN+M+ GY  +G   EA   F +M       +SI++ G+L     
Sbjct: 130 ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC----KNSISWNGMLAAYVQ 185

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
            G +E+    F    S+ + +  +  + C++  Y +  +L  A  + +     D V W T
Sbjct: 186 NGRIEDARRLFE---SKADWE--LISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNT 240

Query: 364 LL 365
           ++
Sbjct: 241 MI 242



 Score = 40.0 bits (92), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 69/165 (41%), Gaps = 32/165 (19%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM------ 282
           N  +  + + G  DSA  +F+ M +R  +SWN+MI G   + +   A   F++M      
Sbjct: 53  NIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLV 112

Query: 283 -------------------LMAGFHP--DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
                              L+    P  D +++  +L G +  G V+E  E F  M  + 
Sbjct: 113 SWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKN 172

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           ++      +  ++  Y + G++E A  +  + +  + + W  ++G
Sbjct: 173 SIS-----WNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMG 212


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/534 (37%), Positives = 307/534 (57%), Gaps = 29/534 (5%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+ + + +   WN++I  ++Q+    +A+  +  M  ++    ++ T    + AC R  
Sbjct: 360 VFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           A ++ + +HGFV++ G +R   V   LM  Y+  G I+ A  +F  M +RDLV+WN++I+
Sbjct: 420 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMIT 479

Query: 164 CYTQASFHLEALKLYERMRFED-----------VGLDGFTLVCLLSSCAHVGALNMGIFL 212
            Y  +  H +AL L  +M+  +           +  +  TL+ +L SCA + AL  G  +
Sbjct: 480 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 539

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H  A +      V VG+ALVDMYAKCG L  +  VF ++ +++V++WN +I+ YG+HG G
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EAI   + M++ G  P+ +TF+ +   CSH G+V+EG+  F++M   Y ++P   HY C
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659

Query: 333 LVDLYGRAGKLEKALEVINTSSPSD---PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
           +VDL GRAG++++A +++N   P D      W +LLG+ +IH N+EIGEIA +NL+QLE 
Sbjct: 660 VVDLLGRAGRIKEAYQLMNM-MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEP 718

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
             A  YVLLA IY+     +     R+ +K  G++  PG SWIE G++VHKFV  D SHP
Sbjct: 719 NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 778

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
            ++ +   LE +  R +  GY  D S V    +  ED  E     HSEKLAIAFG+  T 
Sbjct: 779 QSEKLSGYLETLWERMRKEGYVPDTSCVL--HNVEEDEKEILLCGHSEKLAIAFGILNTS 836

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            GT +R+ KNLR            S    R++I+RD  R+H F++G CSCGDYW
Sbjct: 837 PGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 157/327 (48%), Gaps = 8/327 (2%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV- 102
           +F++I      +WNSLI +         A+  +  ML  ++  P +FT    + AC  + 
Sbjct: 155 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV-EPSSFTLVSVVTACSNLP 213

Query: 103 --KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             + L   +++H + +R G     +++T L+  Y   G + +++ +  +   RDLV+WN+
Sbjct: 214 MPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++S   Q    LEAL+    M  E V  D FT+  +L +C+H+  L  G  LH  A + G
Sbjct: 273 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332

Query: 221 FV-ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
            + E+ +VG+ALVDMY  C  + S   VF  M  R +  WN+MI GY  +    EA+  F
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 280 KQM-LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
             M   AG   +S T  G++  C   G      E  H  V +  L         L+D+Y 
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMYS 451

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL 365
           R GK++ A+ +       D V W T++
Sbjct: 452 RLGKIDIAMRIFGKMEDRDLVTWNTMI 478



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 155/309 (50%), Gaps = 9/309 (2%)

Query: 34  VSSSLSYAQLLF-NQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           V+S++S A  +F +Q ++P+   W  L+R+  +S    +A+  Y  M++  + +PD + F
Sbjct: 44  VASAVSGAPSIFISQSRSPEW--WIDLLRSKVRSNLLREAVLTYVDMIVLGI-KPDNYAF 100

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYE-RCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
              LKA   ++ +   +++H  V + GY    V V+  L+  Y   G   A   VFD + 
Sbjct: 101 PALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRIS 160

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG---ALNM 208
           ER+ VSWNS+IS          AL+ +  M  E+V    FTLV ++++C+++     L M
Sbjct: 161 ERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMM 220

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G  +H      G + S ++ N LV MY K G L S+  +      RD+++WN+++     
Sbjct: 221 GKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           + +  EA+ + ++M++ G  PD  T   +L  CSH  ++  G E     +   +L     
Sbjct: 280 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 339

Query: 329 HYGCLVDLY 337
               LVD+Y
Sbjct: 340 VGSALVDMY 348



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 160/351 (45%), Gaps = 29/351 (8%)

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           L  + S P  F F   L    R K        H +++R+         T+     A+   
Sbjct: 5   LAFTFSLPSIFPFPSQLLPFSRHK--------HPYLLRA-------TPTSATEDVAS--A 47

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           +  A S+F +   R    W  ++    +++   EA+  Y  M    +  D +    LL +
Sbjct: 48  VSGAPSIFISQ-SRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKA 106

Query: 200 CAHVGALNMGIFLHRIACEMGF-VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
            A +  + +G  +H    + G+ V+SV V N LV++Y KCG+  + + VF R+ +R+ +S
Sbjct: 107 VADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS 166

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WNS+I       + + A+  F+ ML     P S T + ++  CS+  +  EG+      V
Sbjct: 167 WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGL-MMGKQV 224

Query: 319 SRYNLKPGIKH---YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS-CKIHRNV 374
             Y L+ G  +      LV +YG+ GKL  +  ++ +    D V W T+L S C+  + +
Sbjct: 225 HAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLL 284

Query: 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
           E  E  ++ +V LE     ++ + + + AC+  E  + RT K + +  +K 
Sbjct: 285 EALEY-LREMV-LEGVEPDEFTISSVLPACSHLE--MLRTGKELHAYALKN 331


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/521 (37%), Positives = 299/521 (57%), Gaps = 14/521 (2%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F++        WN +I A        +A    + M      RPD  T    + AC ++ 
Sbjct: 168 VFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLG 227

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L + + LH +    G +  + V+  ++  Y     IE+A+ VF+ + E+D++SW S++S
Sbjct: 228 NLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLS 287

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
              ++ +  EAL L+++M+   + LD  TLV +LS+CA  GAL+ G ++H +  +     
Sbjct: 288 GLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINC 347

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            + +  ALVDMYAKCG++D A  VF RMR R+V +WN++I G  +HG G++AIS F QM 
Sbjct: 348 DLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQME 407

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
                PD +TF+ LLC CSH GLV+EG+  F  M +++ ++P ++HYGC+VDL  RA K+
Sbjct: 408 HDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKV 467

Query: 344 EKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
           + AL  I N    ++ VLW TLLG+C+   + ++ E   + +++LE  S G YV+L+ +Y
Sbjct: 468 DDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLY 527

Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
           A     +   + RK +K+ GI+ TPG SWIE+   +H+FV  D+SH   + IY  +EE+ 
Sbjct: 528 AGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMT 587

Query: 463 HRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR- 521
            R    G         V     E+  E S   HSEKLAIA GL +TP G+ +RIVKNLR 
Sbjct: 588 RRVNLDG-GHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRV 646

Query: 522 -----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                      S  Y+R+++ RDR R+HHF++G CSC D+W
Sbjct: 647 CNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 133/427 (31%), Positives = 228/427 (53%), Gaps = 24/427 (5%)

Query: 3   LKKHARYVGLNKARQAH-----------EIHGEWLLNSYAISVSSSLSYAQLLFNQIQNP 51
           LK H     ++K +QAH            +    L++  A+S S  L+YA+ LF Q+QNP
Sbjct: 17  LKTHC--TSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNP 74

Query: 52  QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111
                N++IR +A+S +P +A+  Y  M+   +   D +T+ F L AC R+ A+   +  
Sbjct: 75  DPFICNTMIRGYARSQNPYEAVSLYYFMVERGVP-VDNYTYPFVLAACARLGAVKLGRRF 133

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           H  V+++G+   + V   L++ Y   G    A  VFD    RD+V+WN +I+ +      
Sbjct: 134 HCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLS 193

Query: 172 LEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
            +A  L + M + +++  D  T+V L+ +CA +G L  G FLH  + E+G  E++ V NA
Sbjct: 194 EKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNA 253

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           ++DMY KC +++SA  VF+R+R++DVLSW SM+ G    G   EA++ F++M +     D
Sbjct: 254 ILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELD 313

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
            IT +G+L  C+  G +++G +Y H+++ ++ +   +     LVD+Y + G ++ AL+V 
Sbjct: 314 EITLVGVLSACAQTGALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVF 372

Query: 351 NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACTKD- 407
                 +   W  L+G   +H +   GE A+    Q+E       D   +A + AC+   
Sbjct: 373 RRMRVRNVFTWNALIGGLAMHGH---GEDAISLFDQMEHDKLMPDDVTFIALLCACSHAG 429

Query: 408 --EEGVA 412
             +EG+A
Sbjct: 430 LVDEGLA 436


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/550 (39%), Positives = 318/550 (57%), Gaps = 28/550 (5%)

Query: 26  LLNSYAISVSS--SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMA 82
            L S  + VSS     YA  +FNQI NP +  WN+LI A A+SL    QAI  +  ML  
Sbjct: 60  FLYSRILHVSSLIDFDYACRVFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEE 119

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
               PD  TF F LKAC  V AL++ ++ H  + + G +  V V  +L+  YA+ G +  
Sbjct: 120 GSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSM 179

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR--FEDVGLDGFTLVCLLSSC 200
           A  VF+ MP R LVSWN +I  Y Q+     ALKL+  M+  FE    DG+T+  ++S+C
Sbjct: 180 ALKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQNSFEP---DGYTMQSIVSAC 236

Query: 201 AHVGALNMGIFLHRIACEMG---FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           A +GAL++G++ H              V + ++LVDMY+KCG+L  A  VF  M K D+ 
Sbjct: 237 AGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLN 296

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           SWNSMI+   +HGRG  A+  F +++ M  F P+S+TF+G+L  C+H G+V +G +YF M
Sbjct: 297 SWNSMILALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDM 356

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSC-KIHRNV 374
           MV+ Y ++P ++HYGCLVDL  R+G +++ALE++ N     D V+WR+LL +C K +  V
Sbjct: 357 MVNDYKIEPRLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGV 416

Query: 375 EIG-EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIE 433
           E+  E+A K L   +  S+G YV+L+ +YA  +    V   RK++   G+   PG S IE
Sbjct: 417 ELSEEVAFKILQSEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIE 476

Query: 434 IGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA 493
           I    H+F   D SHP    IY  ++ I  + +  GY+ D S  A      ++  ++S  
Sbjct: 477 IDGISHEFFAGDTSHPRIKEIYGVIDLIEEKLERRGYSPDCS-QATMVDEPDNIKQQSLK 535

Query: 494 YHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFR 541
            HSE+LAIAFGL     GT +RI KNLR            S  ++ ++I+RDR R+HHF+
Sbjct: 536 LHSERLAIAFGLLNLKPGTPVRIFKNLRVCNDCHQVTKLISEIFNVEIIMRDRNRFHHFK 595

Query: 542 DGLCSCGDYW 551
            G+CSC D+W
Sbjct: 596 HGMCSCMDFW 605


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/534 (37%), Positives = 313/534 (58%), Gaps = 29/534 (5%)

Query: 38  LSYAQLLFNQIQNPQTQ--AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           L  A+ +F  +  P+    +W +++ A+AQ+  P++A+  ++HM    + +PD       
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDV-KPDWVALVSV 228

Query: 96  LKACERVKALNKCQELHGFVIRSGYE--RCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
           L A   ++ L + + +H  V++ G E    +++S N M  YA  G +  A+ +FD M   
Sbjct: 229 LNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM--YAKCGQVATAKILFDKMKSP 286

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           +L+ WN++IS Y +  +  EA+ ++  M  +DV  D  ++   +S+CA VG+L     ++
Sbjct: 287 NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY 346

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
                  + + V++ +AL+DM+AKCG+++ A  VF R   RDV+ W++MIVGYG+HGR  
Sbjct: 347 EYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAR 406

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           EAIS ++ M   G HP+ +TFLGLL  C+H G+V EG  +F++M   + + P  +HY C+
Sbjct: 407 EAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMAD-HKINPQQQHYACV 465

Query: 334 VDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           +DL GRAG L++A EVI    P  P   +W  LL +CK HR+VE+GE A + L  ++ ++
Sbjct: 466 IDLLGRAGHLDQAYEVIKC-MPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN 524

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
            G YV L+ +YA  +  + VA  R  +K  G+    G SW+E+  ++  F V DKSHP  
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRY 584

Query: 452 DMIYRKLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
           + I R++E I  R K  G+   KD SL  ++   +E+ L      HSE++AIA+GL +TP
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL----CSHSERIAIAYGLISTP 640

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            GT LRI KNLR            S    R+++VRD  R+HHF+DG+CSCGDYW
Sbjct: 641 QGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 193/378 (51%), Gaps = 5/378 (1%)

Query: 30  YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
           +A S    +++A+ +F+ +  PQ   WN++IR ++++     A+  Y++M +A +S PD+
Sbjct: 61  HASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS-PDS 119

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           FTF   LKAC  +  L   + +H  V R G++  V V   L+  YA    + +AR+VF+ 
Sbjct: 120 FTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEG 179

Query: 150 --MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
             +PER +VSW +I+S Y Q    +EAL+++  MR  DV  D   LV +L++   +  L 
Sbjct: 180 LPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLK 239

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  +H    +MG      +  +L  MYAKCG + +A  +F +M+  +++ WN+MI GY 
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +G   EAI  F +M+     PD+I+    +  C+  G +E+    +   V R + +  +
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYE-YVGRSDYRDDV 358

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
                L+D++ + G +E A  V + +   D V+W  ++    +H       I++   ++ 
Sbjct: 359 FISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREA-ISLYRAMER 417

Query: 388 EAASAGDYVLLATIYACT 405
                 D   L  + AC 
Sbjct: 418 GGVHPNDVTFLGLLMACN 435



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 127/261 (48%), Gaps = 3/261 (1%)

Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
           + +++H  ++  G +    + T L+   ++ G I  AR VFD++P   +  WN+II  Y+
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
           + +   +AL +Y  M+   V  D FT   LL +C+ +  L MG F+H     +GF   V+
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 227 VGNALVDMYAKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           V N L+ +YAKC  L SA  VF    + +R ++SW +++  Y  +G   EA+  F  M  
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRK 215

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
               PD +  + +L   +    +++G    H  V +  L+        L  +Y + G++ 
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQG-RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVA 274

Query: 345 KALEVINTSSPSDPVLWRTLL 365
            A  + +     + +LW  ++
Sbjct: 275 TAKILFDKMKSPNLILWNAMI 295


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/529 (37%), Positives = 309/529 (58%), Gaps = 16/529 (3%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           S +  ++ LF  +Q   + +W ++I  F Q+    +AI  +  M + +L   D +TF   
Sbjct: 222 SRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEM-DQYTFGSV 280

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L AC  V AL + +++H ++IR+ Y+  + V + L+  Y     I++A +VF  M  +++
Sbjct: 281 LTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNV 340

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW +++  Y Q  +  EA+K++  M+   +  D FTL  ++SSCA++ +L  G   H  
Sbjct: 341 VSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCR 400

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A   G +  + V NALV +Y KCG+++ +  +FS M   D +SW +++ GY   G+ +E 
Sbjct: 401 ALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANET 460

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F+ ML  GF PD +TF+G+L  CS  GLV++G + F  M+  + + P   HY C++D
Sbjct: 461 LRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMID 520

Query: 336 LYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           L+ RAG+LE+A + IN    S D + W +LL SC+ HRN+EIG+ A ++L++LE  +   
Sbjct: 521 LFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTAS 580

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           Y+LL++IYA     E VA  RK ++  G++  PG SWI+  NQVH F  DD+S+P +D I
Sbjct: 581 YILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQI 640

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y +LE++ ++    GY  D + V      SE    K   +HSEKLAIAFGL   P G  +
Sbjct: 641 YSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKI--KMLNHHSEKLAIAFGLIFIPPGLPI 698

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+VKNLR            S    R+++VRD  R+H F+DG CSCGD+W
Sbjct: 699 RVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCGDFW 747



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 182/371 (49%), Gaps = 34/371 (9%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+SY  S  + L   + +F+ +      +WNSLI A+A     LQ++  YN ML     
Sbjct: 81  LLSSY--SKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
             +    +  L    +   ++   ++HG V++ G++  V V + L+  Y+  G++  AR 
Sbjct: 139 NLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQ 198

Query: 146 VFDNMPERDLV-------------------------------SWNSIISCYTQASFHLEA 174
            FD MPE+++V                               SW ++I+ +TQ     EA
Sbjct: 199 AFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREA 258

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           + L+  MR E++ +D +T   +L++C  V AL  G  +H       + ++++VG+ALVDM
Sbjct: 259 IDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDM 318

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y KC ++ SA  VF +M  ++V+SW +M+VGYG +G  +EA+  F  M   G  PD  T 
Sbjct: 319 YCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTL 378

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
             ++  C++   +EEG + FH       L   I     LV LYG+ G +E +  + +  S
Sbjct: 379 GSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMS 437

Query: 355 PSDPVLWRTLL 365
             D V W  L+
Sbjct: 438 YVDEVSWTALV 448



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 140/330 (42%), Gaps = 64/330 (19%)

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER----- 153
           CE +K     +++H  +I++     + +  NL+  YA    I  AR VFD MP+R     
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 154 --------------------------DLVSWNSIISCYTQASFHLEALKLYERMRFE-DV 186
                                     D+VSWNS+IS Y    F L+++K Y  M +    
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK--------- 237
            L+   L  +L   +  G +++G+ +H    + GF   V+VG+ LVDMY+K         
Sbjct: 139 NLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQ 198

Query: 238 ----------------------CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
                                 C  ++ +  +F  M+++D +SW +MI G+  +G   EA
Sbjct: 199 AFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREA 258

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           I  F++M +     D  TF  +L  C     ++EG +  H  + R + +  I     LVD
Sbjct: 259 IDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQ-VHAYIIRTDYQDNIFVGSALVD 317

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y +   ++ A  V    +  + V W  +L
Sbjct: 318 MYCKCKSIKSAETVFRKMNCKNVVSWTAML 347


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/541 (37%), Positives = 309/541 (57%), Gaps = 21/541 (3%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           +L+N Y+ +    LS    +F + +   +  W+S+I +FAQ+  P+ AI Y+  M+  +L
Sbjct: 94  YLINFYSKTQLPLLS--SQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENL 151

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
             PD   F    KAC  +   +  + +H  VI++GY+  V V ++L+  YA  G I+ AR
Sbjct: 152 C-PDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEAR 210

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           +VFD MP R++VSW+ +I  YTQ   H EA++L++    E + ++ FTL  ++  C    
Sbjct: 211 NVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSAT 270

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
            L +G  +H +  +  +  S +VG++L+ +Y+KCG ++ A+ VF  +  +++  WN+M++
Sbjct: 271 LLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLI 330

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
               H    EA   F +M  AG  P+ ITFL +L  CSH GLVEEG +YF +M  +Y ++
Sbjct: 331 ACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALM-KKYEIE 389

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMK 382
           PG +HY  +VDL GRAGKL++AL VI    P++P   +W   +  C+IH N ++   A  
Sbjct: 390 PGTQHYASMVDLLGRAGKLQEALSVIK-GMPTEPTESVWGAFITGCRIHGNTDLAAFAAD 448

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            + +L A S+G +V+L+  YA     E  A+ RK+++  G+K   G SWIE GN+VHKF 
Sbjct: 449 KVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFA 508

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             D+ H     IY+KLE++    +  GY  D S V     S E    ++  YHSE+LAIA
Sbjct: 509 AGDRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVLREVGSEEK--NQTIRYHSERLAIA 566

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FGL + P G  +RI+KNLR            S    R +IVRD  R+H F DG CSC DY
Sbjct: 567 FGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADY 626

Query: 551 W 551
           W
Sbjct: 627 W 627



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 152/308 (49%), Gaps = 8/308 (2%)

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R ++L K Q++H  +I+SG +   +V   L+  Y+   +   +  VF+    +   +W+S
Sbjct: 66  RSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSS 125

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS + Q    + A++ + RM  E++  D         +CA +G  ++G  +H +  + G
Sbjct: 126 VISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTG 185

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +   V+VG++LVDMYAKCG++  A  VF  M  R+V+SW+ MI GY   G  +EA+  FK
Sbjct: 186 YDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFK 245

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM-MVSRYNLKPGIKHYGCLVDLYGR 339
           + L+ G   +  T   ++  C    L+E G +   +   + Y+L   +     L+ LY +
Sbjct: 246 EALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVG--SSLISLYSK 303

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVL 397
            G +E A  V +     +  +W  +L +C  H +    + A     ++E A         
Sbjct: 304 CGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHT---KEAFDLFTKMENAGMRPNFITF 360

Query: 398 LATIYACT 405
           L  +YAC+
Sbjct: 361 LCVLYACS 368


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/529 (37%), Positives = 308/529 (58%), Gaps = 25/529 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ A  LF+Q+      +W ++I A+++     +A+     ML  ++ RP+ +T++  L+
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNV-RPNVYTYSSVLR 170

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +C     ++  + LH  +I+ G E  V V + L+  +A  G  E A SVFD M   D + 
Sbjct: 171 SC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIV 227

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNSII  + Q S    AL+L++RM+      +  TL  +L +C  +  L +G+  H    
Sbjct: 228 WNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH--VH 285

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            + + + + + NALVDMY KCG+L+ A  VF++M++RDV++W++MI G   +G   EA+ 
Sbjct: 286 IVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALK 345

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++M  +G  P+ IT +G+L  CSH GL+E+G  YF  M   Y + P  +HYGC++DL 
Sbjct: 346 LFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLL 405

Query: 338 GRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           G+AGKL+ A++++N      D V WRTLLG+C++ RN+ + E A K ++ L+   AG Y 
Sbjct: 406 GKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYT 465

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+ IYA ++  + V   R  ++  GIK  PG SWIE+  Q+H F++ D SHP    + +
Sbjct: 466 LLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSK 525

Query: 457 KLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           KL +++HR   IGY  + + V   + G   ED L     +HSEKLA+AFGL T P    +
Sbjct: 526 KLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLR----HHSEKLALAFGLMTLPIEKVI 581

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI KNLR            S    R +++RD +RYHHF+DG CSCGDYW
Sbjct: 582 RIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 147/278 (52%), Gaps = 6/278 (2%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D+ T++  +K C   +A+++   +   +  +G+   + +   L+  Y    ++  A  +F
Sbjct: 60  DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLF 119

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D MP+R+++SW ++IS Y++   H +AL+L   M  ++V  + +T   +L SC  +  + 
Sbjct: 120 DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVR 179

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           M   LH    + G    V+V +AL+D++AK G  + A  VF  M   D + WNS+I G+ 
Sbjct: 180 M---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFA 236

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            + R D A+  FK+M  AGF  +  T   +L  C+   L+E G++  H+ + +Y+    +
Sbjct: 237 QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQA-HVHIVKYDQDLIL 295

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +   LVD+Y + G LE AL V N     D + W T++
Sbjct: 296 NN--ALVDMYCKCGSLEDALRVFNQMKERDVITWSTMI 331



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 4/193 (2%)

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           A+K  + ++   +  D  T   L+  C    A++ G  + R     G    +++ N L++
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY K   L+ A  +F +M +R+V+SW +MI  Y       +A+     ML     P+  T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           +  +L  C+  G+ +  V   H  + +  L+  +     L+D++ + G+ E AL V +  
Sbjct: 165 YSSVLRSCN--GMSD--VRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEM 220

Query: 354 SPSDPVLWRTLLG 366
              D ++W +++G
Sbjct: 221 VTGDAIVWNSIIG 233


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/527 (37%), Positives = 309/527 (58%), Gaps = 20/527 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQ LF++I      +WN++I  +A++ +  +A+  +  M+  ++ RPD  T    + AC 
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV-RPDESTMVTVVSACA 277

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +  ++   +++H ++   G+   + +   L+  Y+  G +E A  +F+ +P +D++SWN+
Sbjct: 278 QSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNT 337

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE-- 218
           +I  YT  + + EAL L++ M       +  T++ +L +CAH+GA+++G ++H    +  
Sbjct: 338 LIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 397

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
            G   +  +  +L+DMYAKCG++++A  VF+ +  + + SWN+MI G+ +HGR D +   
Sbjct: 398 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDL 457

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M   G  PD ITF+GLL  CSH G+++ G   F  M   Y + P ++HYGC++DL G
Sbjct: 458 FSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLG 517

Query: 339 RAG--KLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            +G  K  + +  +    P D V+W +LL +CK+H NVE+GE   +NL+++E  + G YV
Sbjct: 518 HSGLFKEAEEMINMMEMEP-DGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYV 576

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+ IYA       VA+TR L+   G+K  PG S IEI + VH+F++ DK HP    IY 
Sbjct: 577 LLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 636

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            LEE+    +  G+  D S   V     E++ E +  +HSEKLAIAFGL +T  GT L I
Sbjct: 637 MLEEMEVLLEKAGFVPDTS--EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTI 694

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           VKNLR            S  Y R++I RDR R+HHFRDG+CSC DYW
Sbjct: 695 VKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 195/350 (55%), Gaps = 39/350 (11%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA  +F  IQ P    WN++ R  A S  P+ A+  Y  M+   L  P+++TF F LK
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGL-LPNSYTFPFVLK 142

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           +C + KA  + Q++HG V++ G +                               R VV 
Sbjct: 143 SCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVS 202

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L++GYA+ G IE A+ +FD +P +D+VSWN++IS Y +   + EAL+L++ M   +V
Sbjct: 203 YTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV 262

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T+V ++S+CA  G++ +G  +H    + GF  ++ + NAL+D+Y+KCG L++A  
Sbjct: 263 RPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACG 322

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F R+  +DV+SWN++I GY       EA+  F++ML +G  P+ +T L +L  C+H G 
Sbjct: 323 LFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 382

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYG----CLVDLYGRAGKLEKALEVINT 352
           ++ G  + H+ + +  LK G+ +       L+D+Y + G +E A +V N+
Sbjct: 383 IDIG-RWIHVYIDK-RLK-GVTNASSLRTSLIDMYAKCGDIEAAHQVFNS 429



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 156/376 (41%), Gaps = 39/376 (10%)

Query: 66  SLSPL--QAIFYYNHMLMASLSRP-DTFTFTFTLKACERVKALNKCQELHGFVIRSGYER 122
           S SPL   +  Y  H L +S   P D+     +L      K L   + +H  +I+ G   
Sbjct: 4   SCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHN 63

Query: 123 CVVVSTNLMRGYAANGVIEA---ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
                + L+     +   E    A SVF  + E +L+ WN++   +  +S  + ALKLY 
Sbjct: 64  TNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYV 123

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
            M    +  + +T   +L SCA   A   G  +H    ++G    +YV  +L+ MY + G
Sbjct: 124 CMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNG 183

Query: 240 NLDSAFCVFSRMRKR-------------------------------DVLSWNSMIVGYGV 268
            L+ A  VF +   R                               DV+SWN+MI GY  
Sbjct: 184 RLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAE 243

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
            G   EA+  FK M+     PD  T + ++  C+  G +E G +  H+ +  +     +K
Sbjct: 244 TGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLK 302

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
               L+DLY + G+LE A  +       D + W TL+G    H N+    + +   +   
Sbjct: 303 IVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGG-YTHMNLYKEALLLFQEMLRS 361

Query: 389 AASAGDYVLLATIYAC 404
             +  D  +L+ + AC
Sbjct: 362 GETPNDVTMLSILPAC 377


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/512 (37%), Positives = 299/512 (58%), Gaps = 22/512 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W ++I  F Q+    +A+  ++ M    + RP+ FT++  L A   +       E+H  
Sbjct: 364 SWTAMISGFLQNDGKEEAVDLFSEMKRKGV-RPNEFTYSVILTALPVISP----SEVHAQ 418

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           V+++ YER   V T L+  Y   G +E A  VF  + ++D+V+W+++++ Y Q      A
Sbjct: 419 VVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAA 478

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALVD 233
           +K++  +    +  + FT   +L+ CA   A +  G   H  A +     S+ V +AL+ 
Sbjct: 479 IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MYAK GN++SA  VF R R++D++SWNSMI GY  HG+  +A+  FK+M       D +T
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVT 598

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NT 352
           F+G+   C+H GLVEEG +YF +MV    + P  +H  C+VDLY RAG+LEKA++VI N 
Sbjct: 599 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENM 658

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
            +P+   +WRT+L +C++H+  E+G +A + ++ ++   +  YVLL+ +YA + D +  A
Sbjct: 659 PNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERA 718

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           + RKL+    +K  PG+SWIE+ N+ + F+  D+SHP  D IY KLE++  R K +GY  
Sbjct: 719 KVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEP 778

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           D S V       ++  E   A HSE+LAIAFGL  TP G+ L I+KNLR           
Sbjct: 779 DTSYVL--QDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKL 836

Query: 522 -SIAYSRDLIVRDRVRYHHF-RDGLCSCGDYW 551
            +    R+++VRD  R+HHF  DG+CSCGD+W
Sbjct: 837 IAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 159/345 (46%), Gaps = 9/345 (2%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+++Y     S+    + +F++++      W +LI  +A++    + +  +  M   
Sbjct: 131 GTSLVDTYM--KGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNE 188

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
             ++P++FTF   L          +  ++H  V+++G ++ + VS +L+  Y   G +  
Sbjct: 189 G-TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRK 247

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR +FD    + +V+WNS+IS Y      LEAL ++  MR   V L   +   ++  CA+
Sbjct: 248 ARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNS 261
           +  L     LH    + GF+    +  AL+  Y+KC  +  A  +F  +    +V+SW +
Sbjct: 308 LKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTA 367

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI G+  +   +EA+  F +M   G  P+  T+  +L         E      H  V + 
Sbjct: 368 MISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE-----VHAQVVKT 422

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           N +        L+D Y + GK+E+A +V +     D V W  +L 
Sbjct: 423 NYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 133/271 (49%), Gaps = 8/271 (2%)

Query: 6   HARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
           HA+ V  N  R +    G  LL++Y       +  A  +F+ I +    AW++++  +AQ
Sbjct: 416 HAQVVKTNYERSS--TVGTALLDAYV--KLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQ 471

Query: 66  SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA-LNKCQELHGFVIRSGYERCV 124
           +     AI  +  +    + +P+ FTF+  L  C    A + + ++ HGF I+S  +  +
Sbjct: 472 TGETEAAIKMFGELTKGGI-KPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSL 530

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
            VS+ L+  YA  G IE+A  VF    E+DLVSWNS+IS Y Q    ++AL +++ M+  
Sbjct: 531 CVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR 590

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA-LVDMYAKCGNLDS 243
            V +DG T + + ++C H G +  G     I      +      N+ +VD+Y++ G L+ 
Sbjct: 591 KVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 650

Query: 244 AFCVFSRM-RKRDVLSWNSMIVGYGVHGRGD 273
           A  V   M        W +++    VH + +
Sbjct: 651 AMKVIENMPNPAGSTIWRTILAACRVHKKTE 681



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 136/274 (49%), Gaps = 6/274 (2%)

Query: 33  SVSSSLSY-AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQA--IFYYNHMLMASLSRPDT 89
           +VSSS  Y A  LF++      +++ SL+  F++     +A  +F   H L   +   D 
Sbjct: 37  TVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEM---DC 93

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
             F+  LK    +      ++LH   I+ G+   V V T+L+  Y      +  R VFD 
Sbjct: 94  SIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           M ER++V+W ++IS Y + S + E L L+ RM+ E    + FT    L   A  G    G
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
           + +H +  + G  +++ V N+L+++Y KCGN+  A  +F +   + V++WNSMI GY  +
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 273

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           G   EA+  F  M +        +F  ++  C++
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 113/233 (48%), Gaps = 1/233 (0%)

Query: 133 GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192
           G  ++  +  A ++FD  P RD  S+ S++  +++     EA +L+  +    + +D   
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
              +L   A +     G  LH    + GF++ V VG +LVD Y K  N      VF  M+
Sbjct: 96  FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMK 155

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           +R+V++W ++I GY  +   DE ++ F +M   G  P+S TF   L   + +G+   G++
Sbjct: 156 ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             H +V +  L   I     L++LY + G + KA  + + +     V W +++
Sbjct: 216 -VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 267


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/528 (37%), Positives = 297/528 (56%), Gaps = 18/528 (3%)

Query: 38   LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
            +  A+ LF         +WN+++  +  S    +A+  Y  ++  S  R D  T     K
Sbjct: 1088 MEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLY-ILMQESGERSDQITLVNAAK 1146

Query: 98   ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            A   +  L + +++H  V++ G+   + V++ ++  Y   G +E+AR VF  +P  D V+
Sbjct: 1147 AAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVA 1206

Query: 158  WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
            W ++IS   +      AL  Y +MR   V  D +T   L+ +C+ + AL  G  +H    
Sbjct: 1207 WTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIV 1266

Query: 218  EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            ++      +V  +LVDMYAKCGN++ A  +F R   R + SWN+MIVG   HG   EA+ 
Sbjct: 1267 KLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQ 1326

Query: 278  FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            FFK M   G  PD +TF+G+L  CSH GLV E  E F+ M   Y ++P I+HY CLVD  
Sbjct: 1327 FFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDAL 1386

Query: 338  GRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
             RAG++E+A +VI +S P  +   ++RTLL +C++  + E G+   + L+ LE + +  Y
Sbjct: 1387 SRAGRIEEAEKVI-SSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAY 1445

Query: 396  VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
            VLL+ +YA     E VA  R +++   +K  PG+SW+++ N+VH FV  D+SH + D+IY
Sbjct: 1446 VLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIY 1505

Query: 456  RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
             K+E IM R +  GY  D     V     E+  E S  YHSEKLAIA+GL  TP  T+LR
Sbjct: 1506 NKVEYIMKRIREEGYVPDTDFALV--DVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLR 1563

Query: 516  IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            ++KNLR            S  + R++++RD  R+HHFR+G+CSCGDYW
Sbjct: 1564 VIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 172/356 (48%), Gaps = 9/356 (2%)

Query: 23   GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ--AIFYYNHML 80
            G  L+N Y    + S+S A+ +F Q+      +WN++I     +LS L+  ++  + H+L
Sbjct: 973  GNCLINMYV--KAGSVSRARSVFGQMNEVDLISWNTMISGC--TLSGLEECSVGMFVHLL 1028

Query: 81   MASLSRPDTFTFTFTLKACERVKA-LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
              SL  PD FT    L+AC  ++       ++H   +++G      VST L+  Y+  G 
Sbjct: 1029 RDSL-LPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGK 1087

Query: 140  IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
            +E A  +F N    DL SWN+I+  Y  +    +AL+LY  M+      D  TLV    +
Sbjct: 1088 MEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKA 1147

Query: 200  CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
               +  L  G  +H +  + GF   ++V + ++DMY KCG ++SA  VFS +   D ++W
Sbjct: 1148 AGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAW 1207

Query: 260  NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
             +MI G   +G+ + A+  + QM ++   PD  TF  L+  CS    +E+G +  H  + 
Sbjct: 1208 TTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQ-IHANIV 1266

Query: 320  RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
            + N          LVD+Y + G +E A  +   ++      W  ++     H N +
Sbjct: 1267 KLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAK 1322



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 175/371 (47%), Gaps = 9/371 (2%)

Query: 56   WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
            WN  +  F Q     +A+  +  M+ + ++  D  TF   L     +  L   +++HG V
Sbjct: 903  WNKALSRFLQRGEAWEAVDCFVDMINSRVA-CDGLTFVVMLTVVAGLNCLELGKQIHGIV 961

Query: 116  IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
            +RSG ++ V V   L+  Y   G +  ARSVF  M E DL+SWN++IS  T +     ++
Sbjct: 962  MRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSV 1021

Query: 176  KLYERMRFEDVGLDGFTLVCLLSSCAHV-GALNMGIFLHRIACEMGFVESVYVGNALVDM 234
             ++  +  + +  D FT+  +L +C+ + G   +   +H  A + G V   +V  AL+D+
Sbjct: 1022 GMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDV 1081

Query: 235  YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
            Y+K G ++ A  +F      D+ SWN+++ GY V G   +A+  +  M  +G   D IT 
Sbjct: 1082 YSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITL 1141

Query: 295  LGLLCGCSHQGLVEEGVEYFHMMVSR-YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
            +           +++G +   ++V R +NL   +     ++D+Y + G++E A  V +  
Sbjct: 1142 VNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVT--SGVLDMYLKCGEMESARRVFSEI 1199

Query: 354  SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC---TKDEEG 410
               D V W T++  C +    E   +   + ++L      +Y     + AC   T  E+G
Sbjct: 1200 PSPDDVAWTTMISGC-VENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQG 1258

Query: 411  VARTRKLIKSN 421
                  ++K N
Sbjct: 1259 RQIHANIVKLN 1269



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 166/407 (40%), Gaps = 59/407 (14%)

Query: 41   AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
            A++LF+ +       WN +++A+  +    +A+  ++        RPD  T    L+   
Sbjct: 814  ARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGF-RPDDVT----LRTLS 868

Query: 101  RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            RV    KC++              ++     + YA    +      +D+    D++ WN 
Sbjct: 869  RVV---KCKK-------------NILELKQFKAYATKLFM------YDD-DGSDVIVWNK 905

Query: 161  IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
             +S + Q     EA+  +  M    V  DG T V +L+  A +  L +G  +H I    G
Sbjct: 906  ALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSG 965

Query: 221  FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              + V VGN L++MY K G++  A  VF +M + D++SWN+MI G  + G  + ++  F 
Sbjct: 966  LDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFV 1025

Query: 281  QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG----CLVDL 336
             +L     PD  T   +L  CS      EG  Y    +    +K G+         L+D+
Sbjct: 1026 HLLRDSLLPDQFTVASVLRACSSL----EGGYYLATQIHACAMKAGVVLDSFVSTALIDV 1081

Query: 337  YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            Y + GK+E+A  +       D   W  ++    +                     +GD+ 
Sbjct: 1082 YSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIV---------------------SGDFP 1120

Query: 397  LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
                +Y     +E   R+ ++   N  K   G   ++ G Q+H  VV
Sbjct: 1121 KALRLYILM--QESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVV 1165



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 12/241 (4%)

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           +RA   + +PL    +  H L      P  F+    L+       L+  +  H  ++ SG
Sbjct: 636 LRAATSTANPLTPRAHLIHSL------PQCFSI---LRQAIAASDLSLGKRAHARILTSG 686

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYT-QASFHLEALK 176
           +     V+ NL+  YA  G + +AR +FD  P+  RDLV+WN+I+S     A    +   
Sbjct: 687 HHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFH 746

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           L+  +R   V     TL  +   C    + +    LH  A ++G    V+V  ALV++YA
Sbjct: 747 LFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYA 806

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           K G +  A  +F  M  RDV+ WN M+  Y       EA+  F +    GF PD +T   
Sbjct: 807 KFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRT 866

Query: 297 L 297
           L
Sbjct: 867 L 867



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 146/376 (38%), Gaps = 42/376 (11%)

Query: 1    MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ--NPQTQAWNS 58
            +G + HAR   L             L+  YA     SLS A+ LF+     N     WN+
Sbjct: 674  LGKRAHARI--LTSGHHPDRFVTNNLITMYA--KCGSLSSARKLFDTTPDTNRDLVTWNA 729

Query: 59   LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
            ++ A A         F+   +L  S+      T     K C    + +  + LHG+ ++ 
Sbjct: 730  ILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKI 789

Query: 119  GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
            G +  V V+  L+  YA  G+I  AR +FD M  RD+V WN ++  Y       EA+ L+
Sbjct: 790  GLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLF 849

Query: 179  ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE----SVYVGNALVDM 234
                      D  TL  L                  + C+   +E      Y       M
Sbjct: 850  SEFHRTGFRPDDVTLRTL---------------SRVVKCKKNILELKQFKAYATKLF--M 892

Query: 235  YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
            Y   G+              DV+ WN  +  +   G   EA+  F  M+ +    D +TF
Sbjct: 893  YDDDGS--------------DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTF 938

Query: 295  LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
            + +L   +    +E G +  H +V R  L   +    CL+++Y +AG + +A  V    +
Sbjct: 939  VVMLTVVAGLNCLELGKQ-IHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMN 997

Query: 355  PSDPVLWRTLLGSCKI 370
              D + W T++  C +
Sbjct: 998  EVDLISWNTMISGCTL 1013


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/563 (38%), Positives = 313/563 (55%), Gaps = 25/563 (4%)

Query: 4   KKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           K HAR   L      H +    LL S A S  +SLSYA+ +F+ I  P T A+N++IRA 
Sbjct: 6   KLHARL--LKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAH 63

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           A S        +   M MA +S PD FTF F LKAC R   L    +LH  + + G++  
Sbjct: 64  ADSSPSFSLSLFSK-MAMAGVS-PDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDSD 118

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V V   L+  Y   G ++ A  VF+ MPERDLVSW+S+I+C+ +  F  EAL L++RM+ 
Sbjct: 119 VYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQL 178

Query: 184 -EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
              V  D   ++ ++S+ + +G L +G ++       G   +V +G ALVDM+++CG ++
Sbjct: 179 VGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIE 238

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            +  VF  M +R+VL+W ++I G  VHGR  EA+  F +M   GF PD +TF G+L  CS
Sbjct: 239 ESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACS 298

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VL 360
           H GLV EG   F  + + Y ++P  +HYGC+VDL GRAG L +A + ++   P  P  ++
Sbjct: 299 HGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVD-GMPIRPNSII 357

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           WRTLLG+C  H  +E+ E   + + +L++   GDYVLL+ +Y         A  R  ++ 
Sbjct: 358 WRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMRE 417

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
             I   PG S I + + +H+FV  D +HP  + I   L  ++   K +GYT D S V   
Sbjct: 418 KRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFD 477

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
               E   E +  YHSEKLA+AF L    D  ++R++KNLR            S  + R+
Sbjct: 478 IEEEEK--ESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFERE 535

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +I+RDR R+HHF  G CSC DYW
Sbjct: 536 IIIRDRNRFHHFSKGSCSCRDYW 558


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/529 (36%), Positives = 305/529 (57%), Gaps = 20/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+++F+ +       WNS+I  ++     ++A+  + +M    L    T T +  LK
Sbjct: 340 LQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQT-TLSTILK 398

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +    +A   C+++H   I+SGY+    V+ +L+  Y    ++E A  VF+  P  DLV+
Sbjct: 399 STAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVA 458

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           + S+I+ Y+Q     EALK+Y RM+  D+  D F    L ++CA++ A   G  +H    
Sbjct: 459 YTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVL 518

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G +  V+ GN+LV+MYAKCG++D A C+F+ +  R ++SW++MI G   HG G +A+ 
Sbjct: 519 KCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQ 578

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QML  G  P+ IT + +L  C+H GLV E   +F +M   + + P  +HY C+VD+ 
Sbjct: 579 LFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDIL 638

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GR G+L++A+ ++      +   +W  LLG+ +IH+N+E+G  A + L+ LE   +G ++
Sbjct: 639 GRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHI 698

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LLA IYA T   + VA+ R+ +K++ +K  PG SWIE+ ++V+ F+V D+SHP +  IY 
Sbjct: 699 LLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYV 758

Query: 457 KLEEIMHRAKFIGYTK--DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           KL+++  R    GY    +  L  V     E  L     +HSEKLA+AFGL  TP G  +
Sbjct: 759 KLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLL----WHHSEKLAVAFGLIATPPGAPI 814

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+ KNLR            S   SR++IVRD  R+HHFRDG CSCGDYW
Sbjct: 815 RVKKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 173/370 (46%), Gaps = 6/370 (1%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           G+K H   + L     +       LL+ YA S     + A  +F +I  P   +WN++I 
Sbjct: 207 GMKVHGYLIKL--GYDSDPFSANALLDMYAKSGCPEAAIA--VFYEIPKPDIVSWNAVIA 262

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
                     A+     M    ++ P  FT +  LKAC  +  +   ++LH  +++   E
Sbjct: 263 GCVLHEKNDLALKLLGKMGSYRVA-PSMFTLSSALKACAAIGLVKLGRQLHSALMKMDME 321

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
               V   L+  Y+  G+++ AR VFD MP +D++ WNSIIS Y+   + +EA+ L+  M
Sbjct: 322 PDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNM 381

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
             E +  +  TL  +L S A   A      +H I+ + G+    YV N+L+D Y KC  L
Sbjct: 382 YKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLL 441

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           + A  VF      D++++ SMI  Y  +G G+EA+  + +M      PD+  F  L   C
Sbjct: 442 EDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNAC 501

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
           ++    E+G +  H+ V +  L   +     LV++Y + G ++ A  + N  S    V W
Sbjct: 502 ANLSAYEQGKQ-IHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSW 560

Query: 362 RTLLGSCKIH 371
             ++G    H
Sbjct: 561 SAMIGGLAQH 570



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 154/310 (49%), Gaps = 20/310 (6%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P+ F+ +  L AC  ++  N   ++HG++I+ GY+     +  L+  YA +G  EAA +V
Sbjct: 186 PNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAV 245

Query: 147 FDNMPERDLVSWNSIIS-CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           F  +P+ D+VSWN++I+ C       L ALKL  +M    V    FTL   L +CA +G 
Sbjct: 246 FYEIPKPDIVSWNAVIAGCVLHEKNDL-ALKLLGKMGSYRVAPSMFTLSSALKACAAIGL 304

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           + +G  LH    +M      +VG  L+DMY+KCG L  A  VF  M  +DV+ WNS+I G
Sbjct: 305 VKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISG 364

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL---CGCSHQGLVEEGVEYFHMMVSRYN 322
           Y   G   EA+S F  M   G   +  T   +L    G    G  E+        V   +
Sbjct: 365 YSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQ--------VHTIS 416

Query: 323 LKPGIKHYG----CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
           +K G ++ G     L+D YG+   LE A +V       D V + +++ +   +    +GE
Sbjct: 417 IKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITA---YSQYGLGE 473

Query: 379 IAMKNLVQLE 388
            A+K  ++++
Sbjct: 474 EALKMYLRMQ 483



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 116/272 (42%), Gaps = 41/272 (15%)

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           Y+       AR +  +  E DLVSW+++IS Y Q     EAL  Y  M       + FT 
Sbjct: 92  YSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTF 151

Query: 194 VCLLSSCAHVGALNMGIFLHRIA------------------------------------- 216
             +L  C+    L +G  +HR+A                                     
Sbjct: 152 SSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVH 211

Query: 217 ---CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
               ++G+    +  NAL+DMYAK G  ++A  VF  + K D++SWN++I G  +H + D
Sbjct: 212 GYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKND 271

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
            A+    +M      P   T    L  C+  GLV+ G +  H  + + +++P       L
Sbjct: 272 LALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQ-LHSALMKMDMEPDSFVGVGL 330

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +D+Y + G L+ A  V +     D ++W +++
Sbjct: 331 IDMYSKCGLLQDARMVFDLMPXKDVIVWNSII 362


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/566 (38%), Positives = 316/566 (55%), Gaps = 48/566 (8%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS-LSPLQAIFY-YNHMLMASLSRPDTF 90
           S S +L+YA  LF+ I  P    +N++I+ F  S L P  +I   Y+HML  S+  P+ F
Sbjct: 68  STSDALTYALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSV-LPNNF 126

Query: 91  TFTFTLKACERVK---------------ALNKCQE--LHGFVIRSGYERC---------- 123
           TF   L AC +++               A + C    +H +V     E            
Sbjct: 127 TFPSLLIACRKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHP 186

Query: 124 -VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182
             V  T+L+ GY+  G+I+ A ++F  MP+++  SWN++++ Y Q +   EA  L++RM+
Sbjct: 187 DSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMK 246

Query: 183 FEDVG-LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
            E+   LD F    +LS+C  +GAL+ G ++H      G      +  A+VDMY KCG L
Sbjct: 247 AENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCL 306

Query: 242 DSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
           + A  VF  +    R + SWN MI G  +HG G+ AI  FK+M      PD ITFL LL 
Sbjct: 307 EKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLT 366

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DP 358
            C+H GLVEEG  YF  M+  Y ++P ++H+GC+VDL GRAG + +A ++I+    S D 
Sbjct: 367 ACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDV 426

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
            +  TLLG+CK HRN+E+GE   + +++LE  ++G YVLLA +YA     E  A+ RKL+
Sbjct: 427 TVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLM 486

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
              G+K  PG+S IE+   VH+F+  +++HP A  ++ K+ E++   K +GY  D + V 
Sbjct: 487 DDRGVKKAPGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVL 546

Query: 479 VSGS-SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
                  E+  E    YHSEKLAIAFGL+ T  G +LRI+KNLR            S  +
Sbjct: 547 HGHDFDEEEDGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVF 606

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R++IVRDR R+H F+ G CSC DYW
Sbjct: 607 DREIIVRDRTRFHRFKMGQCSCQDYW 632



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 156/369 (42%), Gaps = 51/369 (13%)

Query: 100 ERVKALNKCQELHGFVIR---SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           E+ +++++ ++ H  +IR   S +   +    N     + +  +  A  +FD++P+ D  
Sbjct: 30  EKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAF 89

Query: 157 SWNSIISCYTQASFHL--EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            +N+II  +  +        L LY  M    V  + FT   LL +C  +     G+ +H 
Sbjct: 90  LYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKI---QHGMQIHA 146

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              + GF       N+L+ MY     L+ A  VF  +   D +SW S+I GY   G  DE
Sbjct: 147 HLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDE 206

Query: 275 AISFFKQM----------LMAG------FHP----------------DSITFLGLLCGCS 302
           A + F+ M          +MA       FH                 D      +L  C+
Sbjct: 207 AFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACT 266

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPV-L 360
             G +++G ++ H  + R  ++   K    +VD+Y + G LEKAL+V ++   P   +  
Sbjct: 267 GLGALDQG-KWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISS 325

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYACTKD---EEGVARTR 415
           W  ++G   +H N   GE A++   ++E    +  D   L  + AC      EEG     
Sbjct: 326 WNCMIGGLAMHGN---GEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFS 382

Query: 416 KLIKSNGIK 424
            +I+  GI+
Sbjct: 383 YMIRVYGIE 391


>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 589

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/526 (38%), Positives = 305/526 (57%), Gaps = 29/526 (5%)

Query: 48  IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL-SRPDTFTFTFTLKACERVKALN 106
           +  P T   N+ +R  A S  P +++      L+ +L  RPD  + +F LKA  R    +
Sbjct: 71  LPTPATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAH 130

Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
              +LH  V+R G    V + T L+  YA  G + +AR VFD M  RD+ +WNS+++   
Sbjct: 131 TTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLA 190

Query: 167 QASFHLEALKLYERM--RFEDVG----LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           Q +    AL L+ R+   F+++      +  T+V +LS+CA +G L  G+++H  A + G
Sbjct: 191 QGTEPNLALALFHRLANSFQELPSREEPNEVTIVAVLSACAQIGLLKDGMYVHEFAKKFG 250

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD--VLSWNSMIVGYGVHGRGDEAISF 278
              +V V N+L+DMY+KCG+L  A  VF  ++  D  ++S+N+ I  + +HG G +A+  
Sbjct: 251 LDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRL 310

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M      PD +T+L +LCGC+H GLV++G+  F+ M     + P +KHYG +VDL G
Sbjct: 311 FDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSM----RVAPNMKHYGTIVDLLG 365

Query: 339 RAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
           RAG+L +A + VI+   P+D VLW+TLLG+ K+H  VE+ E+A   L +L +   GDYVL
Sbjct: 366 RAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVL 425

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ +YA       V R R  ++SN ++  PG+S+ EI   +HKF+  DK HP    IYR 
Sbjct: 426 LSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRA 485

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           LE+I+ R   +GY  + S   V     E+  + +  YHSEKLAIAFGL  TP G +LR++
Sbjct: 486 LEDIVSRISELGYEPETS--NVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVI 543

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S AY R +++RDR R+H F DG CSC DYW
Sbjct: 544 KNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 589


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/586 (35%), Positives = 312/586 (53%), Gaps = 54/586 (9%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVS-----SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS 66
           +  AR+  E   +W L S+   +      + L  A+ +F+++      +WN++I  +AQ+
Sbjct: 108 IEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQN 167

Query: 67  -----------LSPLQAIFYYNHMLMA---------------SLSRPDTFTFTFTLKACE 100
                       SP++ +F +  M+                  +   ++ ++   +    
Sbjct: 168 GELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYV 227

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVST--NLMRGYAANGVIEAARSVFDNMPERDLVSW 158
           + K +++ +EL   +       C  VS+   ++ GYA NG I  AR+ FD MP+RD +SW
Sbjct: 228 QCKRMDQARELFEAMP------CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISW 281

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218
            +II+ Y Q+ +  EAL L+  M+ +   L+  T    LS+CA + AL +G  +H    +
Sbjct: 282 AAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVK 341

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
            G     YVGNAL+ MY KCGN+D A+ VF  + +++V+SWN+MI GY  HG G EA+  
Sbjct: 342 AGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALML 401

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F+ M   G  PD +T +G+L  CSH GLV++G EYF+ M   Y +    KHY C++DL G
Sbjct: 402 FESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLG 461

Query: 339 RAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
           RAG+L+ A  ++ N     D   W  LLG+ +IH N E+GE A K + ++E  ++G YVL
Sbjct: 462 RAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVL 521

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ +YA +     V R R  ++  G+K  PG+SW+E+ N++H F V D  HP+ D IY  
Sbjct: 522 LSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTF 581

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           LEE+  + K  GY     LV       E        YHSEKLA+AFG+   P G  +R++
Sbjct: 582 LEELDLKMKKEGYVSSTKLVLHDVEEEEKV--HMLKYHSEKLAVAFGILAIPAGRPIRVI 639

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S    R +I+RD  R+HHF  G CSCGDYW
Sbjct: 640 KNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 160/363 (44%), Gaps = 43/363 (11%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L  A+LLF+Q+      +WN+++  +AQ+    +A   ++ M        ++ ++   L
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK-----NSISWNGML 99

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTN-LMRGYAANGVIEAARSVFDNMPERDL 155
            A  +   +   + L  F  ++ +E   ++S N +M GY     +  AR +FD MPERD 
Sbjct: 100 AAYVQNGRIEDARRL--FESKADWE---LISWNCMMGGYVKRNRLVDARGIFDRMPERDE 154

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM------- 208
           VSWN++IS Y Q    LEA +L+E     DV    FT   ++S     G L+        
Sbjct: 155 VSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFDG 210

Query: 209 ----------GIFLHRIAC----------EMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
                      I    + C          E    ++V   N ++  YA+ G++  A   F
Sbjct: 211 MPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFF 270

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
            RM +RD +SW ++I GY   G G+EA+  F +M   G   +  TF   L  C+    +E
Sbjct: 271 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 330

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            G +  H  V +  L+ G      L+ +Y + G ++ A  V       + V W T++   
Sbjct: 331 LGKQ-VHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGY 389

Query: 369 KIH 371
             H
Sbjct: 390 ARH 392



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 112/236 (47%), Gaps = 19/236 (8%)

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLD 189
           +RG      + AAR +FD MPERD+VSWN+++S Y Q  +  EA ++++ M  ++ +  +
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWN 96

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
           G     +L++    G +     L     +   +      N ++  Y K   L  A  +F 
Sbjct: 97  G-----MLAAYVQNGRIEDARRLFESKADWELIS----WNCMMGGYVKRNRLVDARGIFD 147

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
           RM +RD +SWN+MI GY  +G   EA   F++  +     D  T+  ++ G    G+++E
Sbjct: 148 RMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR----DVFTWTAMVSGYVQNGMLDE 203

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
               F  M  + ++      +  ++  Y +  ++++A E+       +   W T++
Sbjct: 204 ARRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMI 254


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/547 (35%), Positives = 322/547 (58%), Gaps = 19/547 (3%)

Query: 21  IHGEWLLNSYAISVSS--SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNH 78
           ++ E + N++  S +   SLSYAQ +F+ I++    +WN+LI   AQS  P  ++  +  
Sbjct: 177 VYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQ 236

Query: 79  MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
           M ++ L  PD+FT    L AC ++K+L   +E+HGF+IR+  ER + V  +++  Y   G
Sbjct: 237 MKISGL-LPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 295

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
            +   +++FD M ++ LVSWN++I+ Y Q  F   AL ++ +M    + L G +++ +  
Sbjct: 296 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 355

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +C+ + +L +G   H  A +    +  ++  +L+DMYAK G++  +  VF+ ++++   S
Sbjct: 356 ACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS 415

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WN+MI+GYG+HG   EAI  F++M   G +PD +TFLG+L  C+H GL+ EG+ Y   M 
Sbjct: 416 WNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMK 475

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI--NTSSPSDPVLWRTLLGSCKIHRNVEI 376
           S + LKP +KHY C++D+ GRAG+L+KAL V+    S  +D  +W++LL SC+IH+N+E+
Sbjct: 476 SSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEM 535

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
           GE     L +LE     +YVLL+ +YA     E V + R+ +    ++   G SWIE+  
Sbjct: 536 GEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNR 595

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHS 496
           +V  FVV ++     + I      +  +   +GY  D ++      S E+ +E+    HS
Sbjct: 596 KVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPD-TMSVQHDLSEEEKIEQLRG-HS 653

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           EKLA+ +GL  T +GT++R+ KNLR            S    R+++VRD  R+HHF++G+
Sbjct: 654 EKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGV 713

Query: 545 CSCGDYW 551
           CSCGDYW
Sbjct: 714 CSCGDYW 720



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 187/433 (43%), Gaps = 23/433 (5%)

Query: 8   RYVGLNKARQAHEIHG---------EWLLNSYAISVSSS---LSYAQLLFNQIQNPQTQA 55
           R +GL K      +HG         E +LN+  + + S    ++ AQ++F    N    +
Sbjct: 56  REIGLGKG-----VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVS 110

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKACERVKALNKCQELHGF 114
           WN+++  F+              ML      + D  T    +  C     L   +ELH +
Sbjct: 111 WNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCY 170

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
            ++  +    +V+   +  YA  G +  A+ VF  +  + + SWN++I  + Q++    +
Sbjct: 171 SLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLS 230

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L  + +M+   +  D FT+  LLS+C+ + +L +G  +H           ++V  +++ +
Sbjct: 231 LDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSL 290

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y  CG L +   +F  M  + ++SWN++I GY  +G  D A+  F+QM++ G     I+ 
Sbjct: 291 YIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISM 350

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           + +   CS    +  G E  H    ++ L+        L+D+Y + G + ++ +V N   
Sbjct: 351 MPVFGACSLLPSLRLGREA-HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK 409

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGV 411
                 W  ++    IH  +    I +   +Q    +  D   L  + AC       EG+
Sbjct: 410 EKSTASWNAMIMGYGIH-GLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGL 468

Query: 412 ARTRKLIKSNGIK 424
               ++  S G+K
Sbjct: 469 RYLDQMKSSFGLK 481



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 144/316 (45%), Gaps = 6/316 (1%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLS---RPDTFTFTFTLKACERVKALNKCQEL 111
           +WNS+IR F+ +    ++      M+  +      PD  T    L  C R + +   + +
Sbjct: 5   SWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGV 64

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           HG+ ++   ++ +V++  LM  Y+  G I  A+ +F     +++VSWN+++  ++     
Sbjct: 65  HGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDT 124

Query: 172 LEALKLYERMRF--EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
                +  +M    EDV  D  T++  +  C H   L     LH  + +  FV +  V N
Sbjct: 125 HGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVAN 184

Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
           A V  YAKCG+L  A  VF  +R + V SWN++I G+        ++    QM ++G  P
Sbjct: 185 AFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLP 244

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           DS T   LL  CS    +  G E  H  + R  L+  +  Y  ++ LY   G+L     +
Sbjct: 245 DSFTVCSLLSACSKLKSLRLGKE-VHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQAL 303

Query: 350 INTSSPSDPVLWRTLL 365
            +       V W T++
Sbjct: 304 FDAMEDKSLVSWNTVI 319



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 17/225 (7%)

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF-----TLVCLLSSCAHVGALN 207
           R+ VSWNS+I  ++   F  E+  L   M  E+ G   F     TLV +L  CA    + 
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEM-MEENGDGAFMPDVATLVTVLPVCAREREIG 59

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           +G  +H  A ++   + + + NAL+DMY+KCG + +A  +F     ++V+SWN+M+ G+ 
Sbjct: 60  LGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFS 119

Query: 268 VHGRGDEAISFFKQMLMAG--FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
             G         +QML  G     D +T L  +  C H+  +   ++  H     Y+LK 
Sbjct: 120 AEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL-PSLKELHC----YSLKQ 174

Query: 326 GIKH----YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
              +        V  Y + G L  A  V +         W  L+G
Sbjct: 175 EFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIG 219


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/524 (37%), Positives = 303/524 (57%), Gaps = 16/524 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+ +    + +W ++I    Q+    +A+  +  M +      D FTF   L AC 
Sbjct: 223 AEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCM-DQFTFGSVLTACG 281

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
              AL++ +++H ++IR+ Y+  + V + L+  Y     ++ A +VF  M  ++++SW +
Sbjct: 282 GFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTA 341

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  Y Q  +  EA++++  M+  ++  D FTL  ++SSCA++ +L  G   H  A   G
Sbjct: 342 MLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASG 401

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            +  V V NAL+ +Y KCG+L+ A  +F  M+ RD +SW +++ GY   G+ +E IS F+
Sbjct: 402 LICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFE 461

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            ML  G  PD +TF+G+L  CS  GLVE+G  YF  MV  + + P   HY C++DL  RA
Sbjct: 462 TMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRA 521

Query: 341 GKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+LE+A   IN    S D + W TLL SC+++ N+EIG+ A ++L +LE  +   Y+LL+
Sbjct: 522 GRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLS 581

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
           +IYA     + VA+ RK ++  G+K  PG SWI+  N+VH F  DD+S P +D IY KLE
Sbjct: 582 SIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLE 641

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
            +  +    GY  D S V      SE    K   +HSEKLAIAFGL   PDG  +R+VKN
Sbjct: 642 SLYLKMIEEGYVPDMSFVLHDVEKSEKI--KMLNHHSEKLAIAFGLLFIPDGLQIRVVKN 699

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    R+++VRD VR+H F+DG+CSCGD+W
Sbjct: 700 LRVCGDCHNATKYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 183/368 (49%), Gaps = 35/368 (9%)

Query: 32  ISVSSSLSY---AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD 88
           +S  S L Y    Q +F+ + N    +WNSL+  +A +    +++  YN ML       +
Sbjct: 78  LSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLN 137

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
             TF+  L        ++  +++HG + + GY+  + V + L+  YA  G I  A  +F+
Sbjct: 138 RITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFE 197

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERM--------------------------R 182
            +PE+++V +N++I+   +  F +EA +L++ M                          +
Sbjct: 198 EIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDK 257

Query: 183 FEDVGLDG-----FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
           F+++G++G     FT   +L++C    AL+ G  +H       + ++++VG+AL+DMY K
Sbjct: 258 FKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCK 317

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
           C N+  A  VF +MR ++V+SW +M+VGYG +G  +EA+  F  M     HPD  T   +
Sbjct: 318 CRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSV 377

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           +  C++   +EEG + FH       L   +     L+ LYG+ G LE A ++ +     D
Sbjct: 378 ISSCANLASLEEGAQ-FHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRD 436

Query: 358 PVLWRTLL 365
            V W  L+
Sbjct: 437 EVSWTALV 444



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 145/337 (43%), Gaps = 64/337 (18%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           +T  LK C   +   + ++LH  +IR+       +  NL+  Y   G ++ AR+VFD++P
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP 67

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFED-------------------------- 185
           + +L SWN+++S Y++  +  +  ++++ M   D                          
Sbjct: 68  QPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNM 127

Query: 186 ------VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
                 V L+  T   +L   ++ G +++G  +H    + G+   ++VG+ LVDMYAK G
Sbjct: 128 MLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTG 187

Query: 240 NLDSA--------------------------FCV-----FSRMRKRDVLSWNSMIVGYGV 268
            ++ A                          F V     F  M ++D +SW ++I G   
Sbjct: 188 FINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQ 247

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +G   EA+  FK+M + GF  D  TF  +L  C     ++EG +  H  + R + +  I 
Sbjct: 248 NGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQ-IHAYIIRTDYQDNIF 306

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
               L+D+Y +   ++ A  V       + + W  +L
Sbjct: 307 VGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAML 343



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 7/131 (5%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL +A  LF++++     +W +L+  +AQ     + I  +  ML   +  PD  TF   L
Sbjct: 421 SLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIV-PDGVTFVGVL 479

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVS---TNLMRGYAANGVIEAARSVFDNMP-E 152
            AC R   + K    H F       R   +    T ++   +  G +E A++  + MP  
Sbjct: 480 SACSRAGLVEK--GYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFS 537

Query: 153 RDLVSWNSIIS 163
            D + W +++S
Sbjct: 538 PDAIGWATLLS 548


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/547 (35%), Positives = 322/547 (58%), Gaps = 19/547 (3%)

Query: 21  IHGEWLLNSYAISVSS--SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNH 78
           ++ E + N++  S +   SLSYAQ +F+ I++    +WN+LI   AQS  P  ++  +  
Sbjct: 427 VYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQ 486

Query: 79  MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
           M ++ L  PD+FT    L AC ++K+L   +E+HGF+IR+  ER + V  +++  Y   G
Sbjct: 487 MKISGL-LPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 545

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
            +   +++FD M ++ LVSWN++I+ Y Q  F   AL ++ +M    + L G +++ +  
Sbjct: 546 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 605

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +C+ + +L +G   H  A +    +  ++  +L+DMYAK G++  +  VF+ ++++   S
Sbjct: 606 ACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS 665

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WN+MI+GYG+HG   EAI  F++M   G +PD +TFLG+L  C+H GL+ EG+ Y   M 
Sbjct: 666 WNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMK 725

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI--NTSSPSDPVLWRTLLGSCKIHRNVEI 376
           S + LKP +KHY C++D+ GRAG+L+KAL V+    S  +D  +W++LL SC+IH+N+E+
Sbjct: 726 SSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEM 785

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
           GE     L +LE     +YVLL+ +YA     E V + R+ +    ++   G SWIE+  
Sbjct: 786 GEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNR 845

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHS 496
           +V  FVV ++     + I      +  +   +GY  D ++      S E+ +E+    HS
Sbjct: 846 KVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPD-TMSVQHDLSEEEKIEQLRG-HS 903

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           EKLA+ +GL  T +GT++R+ KNLR            S    R+++VRD  R+HHF++G+
Sbjct: 904 EKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGV 963

Query: 545 CSCGDYW 551
           CSCGDYW
Sbjct: 964 CSCGDYW 970



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 175/377 (46%), Gaps = 20/377 (5%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           MG K H    G  + R   ++    ++  YA+  S   S  + +F+ +++     WN++I
Sbjct: 102 MGRKIHQLVSGSTRLRN-DDVLCTRIITMYAMCGSPDDS--RFVFDALRSKNLFQWNAVI 158

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
            +++++    + +  +  M+  +   PD FT+   +KAC  +  +     +HG V+++G 
Sbjct: 159 SSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGL 218

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
              V V   L+  Y  +G +  A  +FD MPER+LVSWNS+I  ++   F  E+  L   
Sbjct: 219 VEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGE 278

Query: 181 MRFEDVGLDGF-----TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           M  E+ G   F     TLV +L  CA    + +G  +H  A ++   + + + NAL+DMY
Sbjct: 279 M-MEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMY 337

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG--FHPDSIT 293
           +KCG + +A  +F     ++V+SWN+M+ G+   G         +QML  G     D +T
Sbjct: 338 SKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVT 397

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH----YGCLVDLYGRAGKLEKALEV 349
            L  +  C H+  +   ++  H     Y+LK    +        V  Y + G L  A  V
Sbjct: 398 ILNAVPVCFHESFL-PSLKELHC----YSLKQEFVYNELVANAFVASYAKCGSLSYAQRV 452

Query: 350 INTSSPSDPVLWRTLLG 366
            +         W  L+G
Sbjct: 453 FHGIRSKTVNSWNALIG 469



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 187/433 (43%), Gaps = 23/433 (5%)

Query: 8   RYVGLNKARQAHEIHG---------EWLLNSYAISVSSS---LSYAQLLFNQIQNPQTQA 55
           R +GL K      +HG         E +LN+  + + S    ++ AQ++F    N    +
Sbjct: 306 REIGLGKG-----VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVS 360

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKACERVKALNKCQELHGF 114
           WN+++  F+              ML      + D  T    +  C     L   +ELH +
Sbjct: 361 WNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCY 420

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
            ++  +    +V+   +  YA  G +  A+ VF  +  + + SWN++I  + Q++    +
Sbjct: 421 SLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLS 480

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L  + +M+   +  D FT+  LLS+C+ + +L +G  +H           ++V  +++ +
Sbjct: 481 LDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSL 540

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y  CG L +   +F  M  + ++SWN++I GY  +G  D A+  F+QM++ G     I+ 
Sbjct: 541 YIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISM 600

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           + +   CS    +  G E  H    ++ L+        L+D+Y + G + ++ +V N   
Sbjct: 601 MPVFGACSLLPSLRLGREA-HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK 659

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGV 411
                 W  ++    IH  +    I +   +Q    +  D   L  + AC       EG+
Sbjct: 660 EKSTASWNAMIMGYGIH-GLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGL 718

Query: 412 ARTRKLIKSNGIK 424
               ++  S G+K
Sbjct: 719 RYLDQMKSSFGLK 731


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 204/540 (37%), Positives = 311/540 (57%), Gaps = 21/540 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LLN Y    S  L  A  LF+++    T ++ +LI+ +A+S+  L+AI  +  +    L 
Sbjct: 79  LLNMYV--KSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVL- 135

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+ FTF   L+AC  ++ LN   ++H  VI+ G    V VS  LM  YA  G +E +  
Sbjct: 136 -PNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSME 194

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F   P R+ V+WN++I  + Q     +AL+L+  M    V     T    L +CA + A
Sbjct: 195 LFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAA 254

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G+ +H +  +  F + + V NAL+DMYAKCG++  A  VF  M K+D +SWN+MI G
Sbjct: 255 LEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISG 314

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y +HG G EA+  F +M      PD +TF+G+L  C++ GL+++G  YF  M+  + ++P
Sbjct: 315 YSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEP 374

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKN 383
            I+HY C+V L GR G L+KA+++I+   P  P  ++WR LLG+C IH ++E+G I+ + 
Sbjct: 375 CIEHYTCMVWLLGRGGHLDKAVKLID-EIPFQPSVMVWRALLGACVIHNDIELGRISAQR 433

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           ++++E      +VLL+ +YA  K  + VA  RK +K  G+K  PG SWIE    VH F V
Sbjct: 434 VLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTV 493

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
            D SHP+  +I   LE +  + K  GY  + ++V +     E   E+    HSE+LA++F
Sbjct: 494 GDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEK--ERLLWVHSERLALSF 551

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G+  TP G+ +RI+KNLR            S    R+++VRD  R+HHF++GLCSCGDYW
Sbjct: 552 GIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 141/306 (46%), Gaps = 39/306 (12%)

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERM-------------------RF----------- 183
           DL +WN +++ Y ++ F  +A KL++ M                   RF           
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
            +V  + FT   +L +CA +  LN+G  +H    ++G    V+V NAL+D+YAKCG +++
Sbjct: 132 REVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMEN 191

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           +  +F+    R+ ++WN++IVG+   G G++A+  F  ML        +T+   L  C+ 
Sbjct: 192 SMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACAS 251

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
              +E G++  H +  +      I     L+D+Y + G ++ A  V +  +  D V W  
Sbjct: 252 LAALEPGLQ-IHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNA 310

Query: 364 LLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLI 418
           ++    +H    +G  A++  + +Q           +  + AC      ++G A    +I
Sbjct: 311 MISGYSMH---GLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMI 367

Query: 419 KSNGIK 424
           + +GI+
Sbjct: 368 QDHGIE 373



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 27/258 (10%)

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           L  C      + G  LH    + G    ++  N L++MY K   L  A  +F  M +R+ 
Sbjct: 45  LQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNT 104

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           +S+ ++I GY    R  EAI  F + L     P+  TF  +L  C+    +  G +  H 
Sbjct: 105 ISFVTLIQGYAESVRFLEAIELFVR-LHREVLPNQFTFASVLQACATMEGLNLGNQ-IHC 162

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEI 376
            V +  L   +     L+D+Y + G++E ++E+   S   + V W T++     H  +  
Sbjct: 163 HVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVG---HVQLGD 219

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
           GE A++  + +      +Y + AT               ++  S+ ++     + +E G 
Sbjct: 220 GEKALRLFLNML-----EYRVQAT---------------EVTYSSALRACASLAALEPGL 259

Query: 437 QVHKFVVDDKSHPDADMI 454
           Q+H   V  K+  D D++
Sbjct: 260 QIHSLTV--KTTFDKDIV 275


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/513 (38%), Positives = 298/513 (58%), Gaps = 25/513 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W ++I    Q+    QA+  ++ M    + +P+ FT++  L     V       E+H  
Sbjct: 364 SWTAMISGCLQNGGNDQAVNLFSQMRREGV-KPNHFTYSAILTVHYPVFV----SEMHAE 418

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           VI++ YER   V T L+  Y   G    A  VF+ +  +DL++W+++++ Y Q     EA
Sbjct: 419 VIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEA 478

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAH-VGALNMGIFLHRIACEMGFVESVYVGNALVD 233
            KL+ ++  E +  + FT   ++++CA    A   G   H  A +M    ++ V +ALV 
Sbjct: 479 AKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVT 538

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MYAK GN+DSA  VF R ++RD++SWNSMI GY  HG+  +A+  F +M       D++T
Sbjct: 539 MYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVT 598

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F+G++  C+H GLVE+G +YF+ M++ +++ P +KHY C++DLY RAG LEKA+ +IN  
Sbjct: 599 FIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEM 658

Query: 354 S-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
             P    +WRTLLG+ ++HRNVE+GE+A + L+ L+   +  YVLL+ +YA   + +   
Sbjct: 659 PFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERT 718

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
             RKL+    +K  PG+SWIE+ N+ + F+  D +HP ++ IY KL E+  R K  GY  
Sbjct: 719 NVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQP 778

Query: 473 DESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
           D   V   +     E  L    ++HSE+LAIAFGL  TP    ++IVKNLR         
Sbjct: 779 DTKNVFHDIEDEQKETIL----SHHSERLAIAFGLIATPPEIPIQIVKNLRVCGDCHNFT 834

Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              S+   R ++VRD  R+HHF+DGLCSCGDYW
Sbjct: 835 KLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 143/264 (54%), Gaps = 3/264 (1%)

Query: 41  AQLLFNQIQN-PQT-QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           A  LF++I + P T +  N L+ ++++     +A+  +  +L +SL +PD  T +     
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSL-QPDESTLSCVFNI 102

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
           C         +++H   ++ G    V V T+L+  Y     +   R VFD M ER++VSW
Sbjct: 103 CAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSW 162

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218
            S+++ Y+    +    +L+ +M++E V  + +T+  ++++  + G + +G+ +H +  +
Sbjct: 163 TSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVK 222

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
            GF E++ V N+L+ +Y++ G L  A  VF +M  RD ++WNSMI GY  +G+  E    
Sbjct: 223 HGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEI 282

Query: 279 FKQMLMAGFHPDSITFLGLLCGCS 302
           F +M +AG  P  +TF  ++  C+
Sbjct: 283 FNKMQLAGVKPTHMTFASVIKSCA 306



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 144/319 (45%), Gaps = 7/319 (2%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P+ +T +  + A      +    ++H  V++ G+E  + V  +L+  Y+  G++  AR V
Sbjct: 192 PNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDV 251

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD M  RD V+WNS+I+ Y +    LE  +++ +M+   V     T   ++ SCA +  L
Sbjct: 252 FDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLREL 311

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-RDVLSWNSMIVG 265
            +   +   A + GF     V  AL+   +KC  +D A  +FS M + ++V+SW +MI G
Sbjct: 312 ALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISG 371

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
              +G  D+A++ F QM   G  P+  T+  +L    +   V E     H  V + N + 
Sbjct: 372 CLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT-VHYPVFVSE----MHAEVIKTNYER 426

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
                  L+D Y + G    A++V       D + W  +L         E        L+
Sbjct: 427 SSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLI 486

Query: 386 QLEAASAGDYVLLATIYAC 404
           + E     ++   + I AC
Sbjct: 487 K-EGIKPNEFTFSSVINAC 504



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 133/276 (48%), Gaps = 10/276 (3%)

Query: 139 VIEAARSVFDNMPERD--LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCL 196
           V   A ++FD +P R   L   N ++  Y++     EAL L+  +    +  D  TL C+
Sbjct: 40  VPHIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCV 99

Query: 197 LSSCAHVGALN--MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
            + CA  G+L+  +G  +H    + G V+ V VG +LVDMY K  N++    VF  M +R
Sbjct: 100 FNICA--GSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGER 157

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           +V+SW S++ GY  +G        F QM   G  P+  T   ++    ++G+V  G++  
Sbjct: 158 NVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-V 216

Query: 315 HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRN 373
           H MV ++  +  I  +  L+ LY R G L  A +V +     D V W +++ G  +  ++
Sbjct: 217 HAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQD 276

Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409
           +E+ EI   N +QL           + I +C    E
Sbjct: 277 LEVFEIF--NKMQLAGVKPTHMTFASVIKSCASLRE 310


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 211/591 (35%), Positives = 324/591 (54%), Gaps = 53/591 (8%)

Query: 12   LNKARQAHEIH------GEWLLNSYAISVSSSL-------SYAQLLFNQIQNPQTQAWNS 58
            L + R   EIH      G+ + NS+  +    +          +L+F+ +       WN+
Sbjct: 547  LERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNA 606

Query: 59   LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
            L+  +A++    QA+  +  M+  S   P+  TF   L AC R K  +  + +HG++++ 
Sbjct: 607  LLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKR 666

Query: 119  GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
            G+ +   V   LM  Y+  G +E ++++F  M +RD+VSWN++I+       + +AL L 
Sbjct: 667  GFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLL 726

Query: 179  ERMR-------------FEDVG-----LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
              M+             +ED G      +  TL+ +L  CA + AL  G  +H  A +  
Sbjct: 727  HEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQK 786

Query: 221  FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
                V VG+ALVDMYAKCG L+ A  VF +M  R+V++WN +I+ YG+HG+G+EA+  F+
Sbjct: 787  LAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFR 846

Query: 281  QMLMAG------FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
             M   G        P+ +T++ +   CSH G+V+EG+  FH M + + ++P   HY CLV
Sbjct: 847  IMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLV 906

Query: 335  DLYGRAGKLEKALEVINT--SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
            DL GR+G++++A E+INT  S+ +    W +LLG+C+IH++VE GEIA K+L  LE   A
Sbjct: 907  DLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVA 966

Query: 393  GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
              YVL++ IY+     +     RK +K  G++  PG SWIE G++VHKF+  D SHP + 
Sbjct: 967  SHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSK 1026

Query: 453  MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
             ++  LE +  R +  GY  D S V  +    E   E     HSE+LAIAFGL  TP GT
Sbjct: 1027 ELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEK--ETMLCGHSERLAIAFGLLNTPPGT 1084

Query: 513  SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            ++R+ KNLR            S    R++I+RD  R+HHF +G CSCGDYW
Sbjct: 1085 TIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 182/406 (44%), Gaps = 23/406 (5%)

Query: 24  EWLLNSYAISVSSSLS-------YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYY 76
           EWLL    +   SSL                ++      W  L+R+   S S   AI  Y
Sbjct: 259 EWLLTQPPLPYPSSLQTHPLTLTLPTPPPTTVERRSPSQWIDLLRSQTHSSSFRDAISTY 318

Query: 77  NHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY--ERCVVVSTNLMRGY 134
             ML A     D F F   LKA   V  L   +++H  V + G+     V V+ +L+  Y
Sbjct: 319 AAMLAAPAPP-DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMY 377

Query: 135 AANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLV 194
              G + AAR VFD++P+RD VSWNS+I+   +      +L L+  M  E+V    FTLV
Sbjct: 378 GKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLV 437

Query: 195 CLLSSCAHV-GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
            +  +C+HV G + +G  +H      G + + Y  NALV MYA+ G ++ A  +F     
Sbjct: 438 SVAHACSHVRGGVRLGKQVHAYTLRNGDLRT-YTNNALVTMYARLGRVNDAKALFGVFDG 496

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           +D++SWN++I     + R +EA+ +   M++ G  PD +T   +L  CS    +  G E 
Sbjct: 497 KDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREI 556

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRN 373
               +   +L         LVD+Y    + +K   V +        +W  LL      RN
Sbjct: 557 HCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAG--YARN 614

Query: 374 VEIGEIAMKNLVQLEAAS---AGDYVLLATIYACTK-----DEEGV 411
            E  + A++  V++ + S          + + AC +     D+EG+
Sbjct: 615 -EFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGI 659


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 203/539 (37%), Positives = 305/539 (56%), Gaps = 19/539 (3%)

Query: 26   LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
            LL+ Y  S   +L+ A   F ++      +W SLI A+ +      AI  +  M    +S
Sbjct: 695  LLDMY--SKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVS 752

Query: 86   RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
             PD ++ T  L AC    +L+K +++H ++ ++    C+ VS  LM  YA  G +E A  
Sbjct: 753  -PDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYL 811

Query: 146  VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
            VF  +P +D+VSWN++I  Y++ S   EALKL+  M+ E    DG T+ CLL +C  + A
Sbjct: 812  VFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRP-DGITMACLLPACGSLAA 870

Query: 206  LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
            L +G  +H      G+   ++V NAL+DMY KCG+L  A  +F  + ++D+++W  MI G
Sbjct: 871  LEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISG 930

Query: 266  YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
             G+HG G+EAI+ F++M +AG  PD ITF  +L  CSH GL+ EG  +F+ M+S  N++P
Sbjct: 931  CGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEP 990

Query: 326  GIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
             ++HY C+VDL  R G L KA  +I T     D  +W  LL  C+IH +VE+ E   +++
Sbjct: 991  KLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHV 1050

Query: 385  VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
             +LE  +AG YVLLA IYA  +  E V + R+ I   G+K +PG SWIE+  +   FV  
Sbjct: 1051 FELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSA 1110

Query: 445  DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
            D +HP A  I+  L  +  + K  G++       ++    E   E +   HSEKLA+AFG
Sbjct: 1111 DTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDMEK--EVALCGHSEKLAMAFG 1168

Query: 505  LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +   P G ++R+ KNLR            S    R++I+RD  R+HHF+DG CSC D+W
Sbjct: 1169 ILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 191/366 (52%), Gaps = 6/366 (1%)

Query: 37  SLSYAQLLFNQI-QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           +L   + +F+ I  + +   WN ++  +A+     ++I+ +  M    ++  +++TF+  
Sbjct: 501 ALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGIT-GNSYTFSCI 559

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LK    +  + +C+ +HG V + G+     V  +L+  Y  +G +++A  +FD + +RD+
Sbjct: 560 LKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDV 619

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSWNS+IS      F   AL+ + +M    VG+D  TLV  +++CA+VG+L++G  LH  
Sbjct: 620 VSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQ 679

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             +  F   V   N L+DMY+KCGNL+ A   F +M ++ V+SW S+I  Y   G  D+A
Sbjct: 680 GVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDA 739

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           I  F +M   G  PD  +   +L  C+    +++G +  H  + + N+   +     L+D
Sbjct: 740 IRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRD-VHNYIRKNNMALCLPVSNALMD 798

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           +Y + G +E+A  V +     D V W T++G    +    +   A+K   +++  S  D 
Sbjct: 799 MYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGG---YSKNSLPNEALKLFAEMQKESRPDG 855

Query: 396 VLLATI 401
           + +A +
Sbjct: 856 ITMACL 861



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 184/373 (49%), Gaps = 8/373 (2%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  +  A  LF+++ +    +WNS+I     +     A+ ++  ML+  +   D  T   
Sbjct: 601 SGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVG-VDLATLVN 659

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           ++ AC  V +L+  + LHG  +++ + R V+ +  L+  Y+  G +  A   F+ M ++ 
Sbjct: 660 SVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKT 719

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +VSW S+I+ Y +   + +A++L+  M  + V  D +++  +L +CA   +L+ G  +H 
Sbjct: 720 VVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHN 779

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              +      + V NAL+DMYAKCG+++ A+ VFS++  +D++SWN+MI GY  +   +E
Sbjct: 780 YIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNE 839

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F +M      PD IT   LL  C     +E G    H  + R      +     L+
Sbjct: 840 ALKLFAEMQKES-RPDGITMACLLPACGSLAALEIG-RGIHGCILRNGYSSELHVANALI 897

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA--SA 392
           D+Y + G L  A  + +     D + W  ++  C +H    +G  A+    ++  A    
Sbjct: 898 DMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHG---LGNEAIATFQKMRIAGIKP 954

Query: 393 GDYVLLATIYACT 405
            +    + +YAC+
Sbjct: 955 DEITFTSILYACS 967



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 4/196 (2%)

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           A++L    +  ++ L+ ++ +  L  CA    L  G  +H +    G      +G  LV 
Sbjct: 437 AVELLRMSQKSELDLNAYSSI--LQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVF 494

Query: 234 MYAKCGNLDSAFCVFSR-MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           MY  CG L     +F   +    V  WN M+  Y   G   E+I  FK+M   G   +S 
Sbjct: 495 MYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSY 554

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TF  +L   +  G V E  +  H  V +            L+  Y ++G+++ A ++ + 
Sbjct: 555 TFSCILKCFATLGRVGE-CKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDE 613

Query: 353 SSPSDPVLWRTLLGSC 368
               D V W +++  C
Sbjct: 614 LGDRDVVSWNSMISGC 629


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/561 (36%), Positives = 323/561 (57%), Gaps = 32/561 (5%)

Query: 19  HEIHGEWLLNSYAISVS------------SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS 66
           H++H   +++ Y  S S             S+SY + +F  + NP +  + SLI++ ++S
Sbjct: 29  HQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKS 88

Query: 67  LS-PLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV 125
            +  + ++++Y+ M+++++S P  +TFT  +K+C  + AL   + +HG V+  G+   V 
Sbjct: 89  HNFSIYSLYFYSRMVLSNVS-PSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVY 147

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           V   L+  Y   G +  AR VFD + ER +V+WNS+IS Y Q  F  EA+ L++RM+   
Sbjct: 148 VQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETG 207

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           V  D  T V +LS+CAH+GA ++G ++H      G   +V +G +L++MY +CGN+  A 
Sbjct: 208 VEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAR 267

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  M++R+V++W +MI GYG +G G +A+  F +M   G  P+SITF+ +L  C+H G
Sbjct: 268 EVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAG 327

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD--PVLWRT 363
           LV EG   F  +   Y+L PG++H  CLVD+ GRAG L++A   I    P +  P +   
Sbjct: 328 LVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTA 387

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           +LG+CK+H+N ++G    ++L+  E  +   YV+L+ IYA     + V   R  +    +
Sbjct: 388 MLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCL 447

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK-DESLVAVSGS 482
           K   G+S +E+  + + F + DKSH + + IY  L+E+M +    GY    +S++     
Sbjct: 448 KKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMHELEE 507

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
              ++  +   YHSEKLAIAFGL  T  GT +RIVKNLR            S   SR++I
Sbjct: 508 EEREYALR---YHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREII 564

Query: 531 VRDRVRYHHFRDGLCSCGDYW 551
           VRD++R+HHF+ G CSC DYW
Sbjct: 565 VRDKLRFHHFKVGSCSCLDYW 585


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 208/539 (38%), Positives = 310/539 (57%), Gaps = 26/539 (4%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAW-NSLIRAFAQ------SLSPLQ-AIFYYNHMLMASLSR 86
            + LSYA+ +F++I  P    W N+L+R +A+      +  P + A   +  ML   ++ 
Sbjct: 81  PAQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVA- 139

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           PDT+TF   LKAC   +A  + ++ HG  ++ G      V   L+  YA  G   AAR++
Sbjct: 140 PDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTM 199

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           F  +    +VS+N++I+   ++S   EAL L+  M+ + + L   TL+ +LS+CA +GAL
Sbjct: 200 FGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGAL 259

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            +G ++H    ++     V V  AL+DMY KCG+L+ A  VF  M  RD  +W+ MIV Y
Sbjct: 260 ELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAY 319

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
             H  G EAIS F++M   G  PD +TFLG+L  CSH GLV EG++YF  M   + L PG
Sbjct: 320 ANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSM-REFGLVPG 378

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNL 384
           IKHYGC+ DL  R+G+L++A E I+   P  P  +LWRTLL +C    + ++G+   + +
Sbjct: 379 IKHYGCVADLLARSGQLDRAYEFID-ELPIKPTAILWRTLLSACGSRGDADLGKQVFERI 437

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           ++L+ +  GDYV+ + + A T   E + R RKL+   G+   PG S IE+ N+VH+F   
Sbjct: 438 LELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAG 497

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D  HP +    R ++ ++ + K  GY  + S V       E+    S  YHSEKLAI+FG
Sbjct: 498 DGRHPKSLDARRMVDGVIEQLKLAGYVPNTSHV-FHVEMGEEEKAVSLRYHSEKLAISFG 556

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L  T  GT+LR+VKNLR            S+ ++R +I+RD  R+HHF DG+CSCGDYW
Sbjct: 557 LLNTSPGTTLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 153/323 (47%), Gaps = 18/323 (5%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM-----RGYAANGVIEAARSVFDNM 150
           L  C  ++AL    +LH   ++SG +      T L+     +G A    +  AR VFD +
Sbjct: 38  LPQCTTLRAL---AQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRI 94

Query: 151 P-ERDLVSWNSIISCYTQASF-------HLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           P   D+V +N+++  Y + S          EA +++ RM  E V  D +T V LL +CA 
Sbjct: 95  PGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAA 154

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
             A   G   H +A ++G  E  YV   L++MYA+CG+  +A  +F R+    V+S+N+M
Sbjct: 155 ARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAM 214

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I       R  EA+  F++M   G    S+T + +L  C+  G +E G  + H  V +  
Sbjct: 215 ITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELG-RWIHEYVRKVQ 273

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           L   +K    L+D+YG+ G LE A+ V       D   W  ++ +   H +     I++ 
Sbjct: 274 LDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANH-SYGREAISLF 332

Query: 383 NLVQLEAASAGDYVLLATIYACT 405
             ++ +     D   L  +YAC+
Sbjct: 333 EEMKKQGIKPDDVTFLGVLYACS 355


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 196/523 (37%), Positives = 299/523 (57%), Gaps = 37/523 (7%)

Query: 33  SVSSSLSYAQLLFNQI--QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           + + S  YAQ +F  +  Q P+T  WNS ++A A+  SP+ AI  +  +    +  PDTF
Sbjct: 71  AFTPSFHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC-PDTF 129

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T +  L+AC  +  L+  + LHG V + G+   + +   ++  YA+ G +  AR +F+ M
Sbjct: 130 TCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKM 189

Query: 151 PERDLVSWN-------------------------------SIISCYTQASFHLEALKLYE 179
           P+RD+V+WN                               S+I+ Y Q     EA+ L+ 
Sbjct: 190 PQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFA 249

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           +M    V  +  T+V +L++CA +GAL++G+ +H  +   GF  +V + N L+DMY KCG
Sbjct: 250 KMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCG 309

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            L+ A  VF  M +R V+SW++MI G  +HGR +EA+  F  M   G  P+ +TF+GLL 
Sbjct: 310 CLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLH 369

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE-VINTSSPSDP 358
            CSH GL+ EG  +F  M   Y + P I+HYGC+VDL  RAG L +A E ++N     + 
Sbjct: 370 ACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNG 429

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
           V+W  LLG+C++H+NVE+ E A+K+L++L+  + G YV+L+ IYA     E  AR RK +
Sbjct: 430 VVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFM 489

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
           K   +K TPGWS I +   VH+FV  ++SHPD + I+++ EE++   +  GY  + S+V 
Sbjct: 490 KDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVL 549

Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
           +     E    K  + HSEKLA+ FGL  TP  T +RI+KNLR
Sbjct: 550 LDIEEGEKV--KFVSRHSEKLALVFGLMNTPAETPIRIMKNLR 590



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 35/330 (10%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER--DLVSWNSIISCYT 166
           +++H  +I++     ++  T +    A       A+ +F+ + ++  +   WNS +    
Sbjct: 45  RQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQKPETFVWNSCLKALA 104

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
           +    ++A+ L+ R+R  DV  D FT   +L +C ++  L+ G  LH +  ++GF  ++Y
Sbjct: 105 EGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLY 164

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN-------------------------- 260
           + N +V +YA CG +  A  +F +M +RDV++WN                          
Sbjct: 165 LQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERN 224

Query: 261 -----SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
                SMI GY   G+  EAI  F +M  AG   + +T + +L  C+  G ++ G+   H
Sbjct: 225 VRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMR-IH 283

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
              +R+  K  ++    L+D+Y + G LE+A +V         V W  ++G   +H   E
Sbjct: 284 EYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAE 343

Query: 376 IGEIAMKNLVQLEAASAGDYVLLATIYACT 405
                  ++ Q+     G    +  ++AC+
Sbjct: 344 EALRLFSDMSQVGIEPNG-VTFIGLLHACS 372


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/562 (35%), Positives = 319/562 (56%), Gaps = 53/562 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ AQ  F  +      +WNS+I    Q     +A+ +++ +L  +  +PD F+    L 
Sbjct: 191 LALAQ--FELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALS 248

Query: 98  ACERVKALNKCQELHGFVIRSGYERC---------------------------------V 124
           AC  ++ L+  +++HG+++R+ ++                                   V
Sbjct: 249 ACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDV 308

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           +  T L+ GY   G I  AR +F+++ + D+V+W ++I  Y Q   + +A+++++ M  E
Sbjct: 309 IAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSE 368

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
               + FTL  +LS+ + V +LN G  +H  A   G   S  VGNAL  MYAK G+++ A
Sbjct: 369 GPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGA 428

Query: 245 FCVFSRMRK-RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
             VF+ +R+ RD +SW SMI+    HG G+EAI  F+QML  G  PD IT++G+L  C+H
Sbjct: 429 RKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTH 488

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWR 362
            GLVE+G  YF +M + + + P + HY C+VDL+GRAG L++A + + N     D + W 
Sbjct: 489 GGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWG 548

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
           +LL SCK+++NV++ ++A + L+ +E  ++G Y  LA +Y+     +  A+ RKL+K+ G
Sbjct: 549 SLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARG 608

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD-ESLVAVSG 481
           +K   G SW++I N+ H F V+D  HP  D IY+ +++I    K +G+  D ES++    
Sbjct: 609 VKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLE 668

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
              +D + +   YHSEKLAIAFG+ +TP+ T+LRI+KNLR            S    R++
Sbjct: 669 VEVKDQILR---YHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREI 725

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           IVRD  R+HHF+DG CSC DYW
Sbjct: 726 IVRDATRFHHFKDGSCSCKDYW 747



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 184/430 (42%), Gaps = 77/430 (17%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           +L+ YA      L  A  +F+ I    + +W ++I  + Q      AI  +  M+   + 
Sbjct: 47  ILSGYA--KQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKV- 103

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P  FT T  L +C    +    +++H FV++ G   CV V+ +L+  YA  G ++ A+ 
Sbjct: 104 LPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKV 163

Query: 146 VFDNMPERDLVSWNSIISCY-------------------------------TQASFHLEA 174
           VFD M  R+  SWN++IS +                                Q  F  EA
Sbjct: 164 VFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEA 223

Query: 175 LKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           L+ +  +  +D  L  D F+L   LS+CA++  L+ G  +H       F  S  VGNAL+
Sbjct: 224 LQFFSSI-LKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALI 282

Query: 233 DMYAKC---------------------------------GNLDSAFCVFSRMRKRDVLSW 259
            MYAK                                  G++  A  +F+ ++  DV++W
Sbjct: 283 SMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAW 342

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMV 318
            +MIVGY  +G  ++AI  FK M+  G  P+S T   +L   S    +  G + +   + 
Sbjct: 343 TAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIR 402

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIG 377
           S   L P + +   L  +Y +AG +  A +V N      D V W +++ +   H    +G
Sbjct: 403 SGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH---GLG 457

Query: 378 EIAMKNLVQL 387
           E A++   Q+
Sbjct: 458 EEAIELFEQM 467



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 25/247 (10%)

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H +  EM  V++ +  N ++  YAK G L+ A  VF  +  RD +SW ++IVGY   GR 
Sbjct: 30  HDLFNEMP-VKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRF 88

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV-EYFHMMVSRYNLKPGIKHYG 331
           ++AI  F  M+     P   T   +L  C+  G    G+ +  H  V +  L   +    
Sbjct: 89  EDAIKIFVDMVKDKVLPTQFTLTNVLASCAATG--SRGIGKKVHSFVVKLGLHACVPVAN 146

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
            L+++Y + G L+ A  V +     +   W  ++    +H N    ++A   L Q E  S
Sbjct: 147 SLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMIS---LHMNCGRVDLA---LAQFELLS 200

Query: 392 AGDYVLLATIYA-CTK---DEEGVARTRKLIKSNGIKTT-----------PGWSWIEIGN 436
             D V   ++ A C +   D E +     ++K   +K                  +  G 
Sbjct: 201 ERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGK 260

Query: 437 QVHKFVV 443
           Q+H ++V
Sbjct: 261 QIHGYIV 267


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/510 (39%), Positives = 298/510 (58%), Gaps = 48/510 (9%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           PDTFT +F LKAC ++  +   + +HG   + G+   + +   ++  Y   G +  A  +
Sbjct: 8   PDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLL 67

Query: 147 FDNMPERDLVSWN-------------------------------SIISCYTQASFHLEAL 175
           F+ MP+RD V+WN                               S+IS + Q     EA+
Sbjct: 68  FEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAI 127

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
            L+ ++  E V  +  T+V +L++CA +G L++G  +H  + + GF  +V+V N L+DMY
Sbjct: 128 DLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMY 187

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
            KCG L++A  VF  M +R V+SW++MI G  +HG+ +EA+  F +M+  G  P+ +TF+
Sbjct: 188 VKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFI 247

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
           GLL  CSH GL++EG  +F  M + Y + P I+HYGC+VDL+ RAG LE+A E I  S P
Sbjct: 248 GLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFI-LSMP 306

Query: 356 SDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
             P  V+W  LLG CK+H+N+++ E A+K+L +L+  + G YV+++ IYA  +  E  AR
Sbjct: 307 IKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAAR 366

Query: 414 TRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD 473
            RKL+K  G+K T GWS I +   VH+FV  D++HP A+ I +  ++++ + K  GY   
Sbjct: 367 VRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGYAPK 426

Query: 474 ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------ 521
            S+V +     E   EK    HSEKLA+ FGL TTP+GT +RI+KNLR            
Sbjct: 427 TSVVLLDMEEKEK--EKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALKII 484

Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           S   SR++IVRDR R+H FRDG CSC D+W
Sbjct: 485 SGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 3/241 (1%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
            F ++ N   ++W S+I  F Q   P +AI  +   L     RP+  T    L AC  + 
Sbjct: 98  FFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMK-LEDEAVRPNEVTVVSVLAACADLG 156

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L+  + +H +  +SG++R V V   L+  Y   G +E AR VF  M ER +VSW+++I+
Sbjct: 157 DLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIA 216

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIACEMGFV 222
                    EAL L+  M    V  +G T + LL +C+H+G ++ G  F   +  + G +
Sbjct: 217 GLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVI 276

Query: 223 ESVYVGNALVDMYAKCGNLDSAF-CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
             +     +VD++++ G L+ A   + S   K + + W +++ G  VH   D A    K 
Sbjct: 277 PQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKH 336

Query: 282 M 282
           +
Sbjct: 337 L 337



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 41/260 (15%)

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           MR  DV  D FT   +L +C  +  +  G  +H +  ++GF  ++++ N ++++Y  CG 
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 241 LDSAFCVFSRMRKRDVLSWN-------------------------------SMIVGYGVH 269
           +  A  +F +M +RD ++WN                               SMI G+   
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G+ +EAI  F ++      P+ +T + +L  C+  G ++ G      +V  Y+ K G K 
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLG-----RIVHEYSTKSGFKR 175

Query: 330 Y----GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
                  L+D+Y + G LE A  V         V W  ++    +H   E        ++
Sbjct: 176 NVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMI 235

Query: 386 QLEAASAGDYVLLATIYACT 405
           +L     G    +  ++AC+
Sbjct: 236 KLGVKPNG-VTFIGLLHACS 254


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 209/535 (39%), Positives = 307/535 (57%), Gaps = 24/535 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP-DTFTFTFT 95
           S+  A  +F++ +      WN+L RA A      + +  Y  + M  +  P D FT+T+ 
Sbjct: 128 SIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLY--IQMNWIGTPSDRFTYTYV 185

Query: 96  LKACE----RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           LKAC      V  L K +E+H  ++R GYE  + V T L+  YA  G +  A SVF  MP
Sbjct: 186 LKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMP 245

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG--LDGFTLVCLLSSCAHVGALNMG 209
            ++ VSW+++I+C+ +    ++AL+L++ M FE      +  T+V +L +CA + AL  G
Sbjct: 246 TKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQG 305

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H           + V NAL+ MY +CG +     VF  M+KRDV+SWNS+I  YG+H
Sbjct: 306 KLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMH 365

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G G +AI  F+ M+  G  P  I+F+ +L  CSH GLVEEG   F  M+S+Y + PG++H
Sbjct: 366 GFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEH 425

Query: 330 YGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
           Y C+VDL GRA +L +A+++I +      P +W +LLGSC+IH NVE+ E A   L +LE
Sbjct: 426 YACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELE 485

Query: 389 AASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSH 448
             +AG+YVLLA IYA  K         KL+++ G++  PG SWIE+  +V+ FV  D+ +
Sbjct: 486 PRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHN 545

Query: 449 PDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
           P  + I+  L ++ +  K  GY    ++V       E   E+    HSEKLA+AFGL  T
Sbjct: 546 PQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEK--ERIVLGHSEKLAVAFGLINT 603

Query: 509 PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             G ++RI KNLR            S   +R+++VRD  R+HHFRDG+CSCGDYW
Sbjct: 604 AKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCGDYW 658



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 158/341 (46%), Gaps = 16/341 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL+ +  L N I +      N LI++  +  +  QA+    H+L      P   TF   +
Sbjct: 35  SLNPSANLINDINSNN----NQLIQSLCKGGNLKQAL----HLLCCE-PNPTQQTFEHLI 85

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            +C +  +L+   ++H  ++ SG+++   ++T L+  Y   G I+ A  VFD   ER + 
Sbjct: 86  YSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIY 145

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA----HVGALNMGIFL 212
            WN++           E L LY +M +     D FT   +L +C      V  L  G  +
Sbjct: 146 VWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEI 205

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H      G+  +++V   L+D+YAK G++  A  VF  M  ++ +SW++MI  +  +   
Sbjct: 206 HAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMP 265

Query: 273 DEAISFFKQMLMAGFH--PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
            +A+  F+ M+    +  P+S+T + +L  C+    +E+G +  H  + R  L   +   
Sbjct: 266 MKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQG-KLIHGYILRRQLDSILPVL 324

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
             L+ +YGR G++     V +     D V W +L+    +H
Sbjct: 325 NALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMH 365



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           L+ SCA   +L+ G+ +HR   + GF +  ++   L++MY + G++D A  VF   R+R 
Sbjct: 84  LIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERT 143

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL----VEEGV 311
           +  WN++     + G G E +  + QM   G   D  T+  +L  C    L    + +G 
Sbjct: 144 IYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGK 203

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           E  H  + R+  +  I     L+D+Y + G +  A  V       + V W  ++ +C   
Sbjct: 204 E-IHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMI-ACFAK 261

Query: 372 RNVEIGEIAMKNLVQLEAASA 392
             + +  + +  L+  EA ++
Sbjct: 262 NEMPMKALELFQLMMFEACNS 282


>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 587

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 205/526 (38%), Positives = 303/526 (57%), Gaps = 29/526 (5%)

Query: 48  IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL-SRPDTFTFTFTLKACERVKALN 106
           +  P T   N+ +R  A S  P +++      L+ +L  RPD  + +F LKA  R    +
Sbjct: 69  LPTPATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAH 128

Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
              +LH  V+R G    V + T L+  YA  G + +AR VFD M  RD+ +WNS+++   
Sbjct: 129 TTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLA 188

Query: 167 QASFHLEALKLYERM--RFEDVG----LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           Q +    AL L+ R+   F+++      +  T+V  LS+CA +G L  G+++H  A   G
Sbjct: 189 QGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFG 248

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD--VLSWNSMIVGYGVHGRGDEAISF 278
              +V V N+L+DMY+KCG+L  A  VF  ++  D  ++S+N+ I  + +HG G +A+  
Sbjct: 249 LDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRL 308

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M      PD +T+L +LCGC+H GLV++G+  F+ M     + P +KHYG +VDL G
Sbjct: 309 FDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSM----RVAPNMKHYGTIVDLLG 363

Query: 339 RAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
           RAG+L +A + VI+   P+D VLW+TLLG+ K+H  VE+ E+A   L +L +   GDYVL
Sbjct: 364 RAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVL 423

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ +YA       V R R  ++SN ++  PG+S+ EI   +HKF+  DK HP    IYR 
Sbjct: 424 LSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRA 483

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           LE+I+ R   +GY  + S   V     E+  + +  YHSEKLAIAFGL  TP G +LR++
Sbjct: 484 LEDIVSRISELGYEPETS--NVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVI 541

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S AY R +++RDR R+H F DG CSC DYW
Sbjct: 542 KNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 587


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 209/558 (37%), Positives = 316/558 (56%), Gaps = 30/558 (5%)

Query: 20  EIHG----------EWLLNSY--AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSL 67
           EIHG          E + N++  A +  SSL  A+ +F  ++     +WN+LI A AQ+ 
Sbjct: 422 EIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNG 481

Query: 68  SPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
            P +++  +  ++M S   PD FT    L AC R+K L   +E+HGF++R+G E    + 
Sbjct: 482 FPGKSLDLF-LVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIG 540

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
            +LM  Y     +   + +FD M  + LV WN +I+ ++Q     EAL  + +M    + 
Sbjct: 541 ISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIK 600

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
                +  +L +C+ V AL +G  +H  A +    E  +V  AL+DMYAKCG ++ +  +
Sbjct: 601 PQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNI 660

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F R+ ++D   WN +I GYG+HG G +AI  F+ M   G  PDS TFLG+L  C+H GLV
Sbjct: 661 FDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLV 720

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLL 365
            EG++Y   M + Y +KP ++HY C+VD+ GRAG+L +AL+++N   P +P   +W +LL
Sbjct: 721 TEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVN-EMPDEPDSGIWSSLL 779

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
            SC+ + ++EIGE   K L++LE   A +YVLL+ +YA     + V + R+ +K NG+  
Sbjct: 780 SSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHK 839

Query: 426 TPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSE 485
             G SWIEIG  V++F+V D S  ++  I +   ++  +   IGY  D S V       E
Sbjct: 840 DAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVL--HELEE 897

Query: 486 DFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRD 533
           +   K    HSEKLAI+FGL  T  GT+LR+ KNLR            S    RD+IVRD
Sbjct: 898 EGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRD 957

Query: 534 RVRYHHFRDGLCSCGDYW 551
             R+HHF++GLC+CGD+W
Sbjct: 958 NKRFHHFKNGLCTCGDFW 975



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 149/275 (54%), Gaps = 6/275 (2%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           L+AC   K ++  +++H  V  S   R  VV+ST ++  Y+A G    +R VFD   E+D
Sbjct: 99  LRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKD 158

Query: 155 LVSWNSIISCYTQASFHLEALKLY-ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           L  +N+++S Y++ +   +A+ L+ E +   D+  D FTL C+  +CA V  + +G  +H
Sbjct: 159 LFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVH 218

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            +A + G     +VGNAL+ MY KCG ++SA  VF  MR R+++SWNS++     +G   
Sbjct: 219 ALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFG 278

Query: 274 EAISFFKQMLMA---GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
           E    FK++L++   G  PD  T + ++  C+  G V  G+   H +  +  +   +   
Sbjct: 279 ECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGM-VVHGLAFKLGITEEVTVN 337

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             LVD+Y + G L +A  + + +   + V W T++
Sbjct: 338 NSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTII 372



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 4/369 (1%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIF-YYNHMLMASLSRPDTFTFTFTL 96
           L  A+ LF+        +WN++I  +++     + +F     M      R +  T    L
Sbjct: 350 LGEARALFDMNGGKNVVSWNTIIWGYSKE-GDFRGVFELLQEMQREEKVRVNEVTVLNVL 408

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC     L   +E+HG+  R G+ +  +V+   +  YA    ++ A  VF  M  + + 
Sbjct: 409 PACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVS 468

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I  + Q  F  ++L L+  M    +  D FT+  LL +CA +  L  G  +H   
Sbjct: 469 SWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFM 528

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              G     ++G +L+ +Y +C ++     +F +M  + ++ WN MI G+  +    EA+
Sbjct: 529 LRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEAL 588

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F+QML  G  P  I   G+L  CS    +  G E  H    + +L         L+D+
Sbjct: 589 DTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKE-VHSFALKAHLSEDAFVTCALIDM 647

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           Y + G +E++  + +  +  D  +W  ++    IH +  +  I +  L+Q +      + 
Sbjct: 648 YAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGH-GLKAIELFELMQNKGGRPDSFT 706

Query: 397 LLATIYACT 405
            L  + AC 
Sbjct: 707 FLGVLIACN 715



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 172/359 (47%), Gaps = 12/359 (3%)

Query: 18  AHEIHGEWLLNSYAISVSS---SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIF 74
           +H++  + +L++  I++ S   S S ++ +F+  +      +N+L+  ++++     AI 
Sbjct: 121 SHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAIS 180

Query: 75  YYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGY 134
            +  +L A+   PD FT     KAC  V  +   + +H   +++G      V   L+  Y
Sbjct: 181 LFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMY 240

Query: 135 AANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF-EDVGL--DGF 191
              G +E+A  VF+ M  R+LVSWNS++   ++     E   +++R+   E+ GL  D  
Sbjct: 241 GKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVA 300

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           T+V ++ +CA VG + MG+ +H +A ++G  E V V N+LVDMY+KCG L  A  +F   
Sbjct: 301 TMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMN 360

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM-AGFHPDSITFLGLLCGCS--HQGLVE 308
             ++V+SWN++I GY   G         ++M        + +T L +L  CS  HQ L  
Sbjct: 361 GGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLL-- 418

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
             ++  H    R+            V  Y +   L+ A  V           W  L+G+
Sbjct: 419 -SLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGA 476



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 3/175 (1%)

Query: 196 LLSSCAHVGALNMGIFLHR-IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
           LL +C H   +++G  +H  ++        V +   ++ MY+ CG+   +  VF   +++
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMA-GFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           D+  +N+++ GY  +    +AIS F ++L A    PD+ T   +   C+    VE G E 
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELG-EA 216

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            H +  +            L+ +YG+ G +E A++V  T    + V W +++ +C
Sbjct: 217 VHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYAC 271


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 213/540 (39%), Positives = 309/540 (57%), Gaps = 19/540 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L++ YA      + +A+ LF+ +       WN LIRA+A+      A+  Y  M+   + 
Sbjct: 103 LVDLYA--ACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVE 160

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD FT+   LKAC  +  L   +E+H  V  + + + V V   ++  YA  G ++ AR+
Sbjct: 161 -PDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARA 219

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD +  RD V WNS+I+ Y Q    +EAL L   M    +G    TLV  +S+ A   A
Sbjct: 220 VFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAA 279

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  LH      GF     +  +LVDMYAK G +  A  +F ++ KR+++SWN+MI G
Sbjct: 280 LPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICG 339

Query: 266 YGVHGRGDEAISFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           YG+HG  DEA++ F +M   A   PD+ITF+G+L  C+H G+VEE  E+F++MV+ Y++K
Sbjct: 340 YGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIK 399

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
           P ++HY C++D+ G  G+ E+A ++I   S   D  +W  LL  CKIH+NVE+GE+A++ 
Sbjct: 400 PTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQK 459

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           L++LE   AG+YV L+ IYA +   E  AR RKL+ + G+K     SWIE+  + H F+V
Sbjct: 460 LIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLV 519

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
            D SHP +D IY +LE +       GY  D  ++ V  +  +D        HSE+LAIAF
Sbjct: 520 GDASHPRSDEIYGELERLEGLMSDAGYVPD--IIPVFHNVDDDEKRNMVRSHSERLAIAF 577

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           GL +TP GT L + KNLR            S    R++I+RD  RYHHF +G CSC DYW
Sbjct: 578 GLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 151/314 (48%), Gaps = 3/314 (0%)

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
           T  L++C    +L   ++LHG ++ SG     V+ST L+  YAA G +  AR +FD MP+
Sbjct: 66  TSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPK 125

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           R++  WN +I  Y +      A++LY  M    V  D FT   +L +CA +  L  G  +
Sbjct: 126 RNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREV 185

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H+      + + V+V   +VDMYAKCG +D A  VF  +  RD + WNSMI  YG +GR 
Sbjct: 186 HQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRP 245

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EA++  + M   G  P   T +  +   +    +  G E  H    R       K    
Sbjct: 246 MEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRE-LHGFGWRRGFGLQDKLKTS 304

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           LVD+Y ++G ++ A  +       + V W  ++    +H + +   +A+ N ++ +A   
Sbjct: 305 LVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEA-LALFNKMKGDAQVT 363

Query: 393 GDYV-LLATIYACT 405
            D +  +  + AC 
Sbjct: 364 PDNITFVGVLSACN 377


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 222/603 (36%), Positives = 328/603 (54%), Gaps = 65/603 (10%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGE----WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAW 56
           +GL   AR       R   EIH +    W +    ++    L   QLL +Q       +W
Sbjct: 155 LGLAADAR-------RAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISW 207

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
            SLI A++++    +A+  +  ML   ++ PD  T    L AC ++K L   + LH  V 
Sbjct: 208 TSLIAAYSRANRAREAVGCFKTMLSHGIA-PDEVTVIAVLSACAKLKDLELGRSLHLLVE 266

Query: 117 RSGY---ERCVVVSTNL-----------------------------MRGYAANGVIEAAR 144
             G    E  VV   ++                             + GY  +G ++ AR
Sbjct: 267 EKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVAR 326

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           S+FD M  RD++++NS+++ Y  +    EAL L+  MR  D+ +D FT+V LL++CA +G
Sbjct: 327 SLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLG 386

Query: 205 ALNMGIFLHRIAC-EMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           AL  G  LH  AC E   VE+ +Y+G AL+DMY KCG +D A  VF RM KRDV +W +M
Sbjct: 387 ALQQGRALH--ACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAM 444

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I G   +G G  A+  F QM   GF P+S++++ +L  CSH  L+ EG  YF  M   YN
Sbjct: 445 IAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYN 504

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIA 380
           + P I+HYGC++DL GR+G L++A++++ T  P  P  V+W ++L +C++H+++++ + A
Sbjct: 505 IHPQIEHYGCMIDLLGRSGLLDEAMDLVKT-MPIQPNAVIWASILSACRVHKHIDLAQCA 563

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            ++L++LE    G YV L  IY  ++  E  ++ R L++   +K T G+S I +  QVHK
Sbjct: 564 AEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHK 623

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           FVV DKSHP    I   LEEI HR K +GY+   S + V     E   E++   HSEKLA
Sbjct: 624 FVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEK--EQALLAHSEKLA 681

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           IAFGL        + I KNLR            S  ++R++IVRDR R+HHFR+G CSC 
Sbjct: 682 IAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCN 741

Query: 549 DYW 551
           D+W
Sbjct: 742 DFW 744



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 193/460 (41%), Gaps = 79/460 (17%)

Query: 19  HEIHGEWLLNSYAISVSSS---LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIF 74
           H      LLNS    +      L YA  LF+++  P T  +++ +RA +++ S P +   
Sbjct: 31  HPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PSTFLFDTALRACSRAGSDPHRPFL 89

Query: 75  YYNHMLMASLSRPDTFTFTFTLKACE---RVKALNKCQELHGFVIRSGYERCV-VVSTNL 130
            +  M  A + RPD FTF F  K      R  +L  C  LH   +R+        VS +L
Sbjct: 90  LFRRMRRAGV-RPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSL 148

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSW-------------------------------N 159
           +  Y   G+   AR  FD +  +D V+W                                
Sbjct: 149 IHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWT 208

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           S+I+ Y++A+   EA+  ++ M    +  D  T++ +LS+CA +  L +G  LH +  E 
Sbjct: 209 SLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEK 268

Query: 220 GFVESVYVGNALVDMYAKCGN--------------------------------LDSAFCV 247
           G   S  +  AL+DMYAKCG+                                +D A  +
Sbjct: 269 GMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSL 328

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F  M  RD++++NSM+ GY   G+  EA+  F  M       D+ T + LL  C+  G +
Sbjct: 329 FDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGAL 388

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
           ++G    H  + +  ++  I     L+D+Y + G++++A  V       D   W  ++  
Sbjct: 389 QQG-RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAG 447

Query: 368 CKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLATIYACT 405
              +    +G+ A+++  Q+  +         +A + AC+
Sbjct: 448 LAFN---GMGKAALEHFYQMRCDGFQPNSVSYIAVLTACS 484


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/472 (42%), Positives = 279/472 (59%), Gaps = 35/472 (7%)

Query: 112 HGFV---IRSGYERCVVVSTNL--------------MRGYAANGVIEAARSVFDNMPERD 154
           HG+V   I S Y +CVV   NL                        E+A  VF+ MPE+D
Sbjct: 12  HGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESAYKVFELMPEKD 71

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +V+WNS+I+ +       EAL LY+RM  E V  DGFT+V LLS+CA +  L +G   H 
Sbjct: 72  IVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHV 131

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGD 273
              ++G  ++++  NAL+D+YAKCG +  A  +F  M  +R+V+SW S+IVG  V+G G 
Sbjct: 132 YMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGK 191

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           EA+  FK M   G  P  ITF+G+L  CSH G+V EG EYF  M  +Y++ P I+HYGC+
Sbjct: 192 EALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCM 251

Query: 334 VDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           VDL GRAG L++A + I    P  P  V+WRTLLG+C IH ++ +G  A   L+QLE   
Sbjct: 252 VDLLGRAGLLKEAYDYIQ-DMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKD 310

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
           +GDYVLL+ +YA  +    V   R+ + S G++ TPG+S +E+GN VH+FV+ D++HP +
Sbjct: 311 SGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHPQS 370

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
           + IY+ L E+  + K  GY    + V       E   E +  YHSEK+AIAF L  T  G
Sbjct: 371 EAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEK--ESALFYHSEKIAIAFMLINTLPG 428

Query: 512 TSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           T +RI+KNLR            S  + RD++VRD  R+HHFRDG CSC DYW
Sbjct: 429 TPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 4/240 (1%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93
           +++    A  +F  +      AWNS+I  FA +  P +A+  Y  M    +  PD FT  
Sbjct: 53  ITAYFESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVE-PDGFTMV 111

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-E 152
             L AC  +  L   +  H ++++ G  + +  +  L+  YA  G I  AR +FD M  E
Sbjct: 112 SLLSACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIE 171

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-F 211
           R++VSW S+I       F  EAL+ ++ M  E +     T V +L +C+H G +N G  +
Sbjct: 172 RNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEY 231

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHG 270
             R+  +   V  +     +VD+  + G L  A+     M  + + + W +++    +HG
Sbjct: 232 FKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHG 291



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 46/235 (19%)

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC--GNL------------------ 241
           H  A+  GIF H            YV N ++  Y+KC  G+L                  
Sbjct: 1   HCQAVKPGIFSHG-----------YVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTL 49

Query: 242 --------DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
                   +SA+ VF  M ++D+++WNS+I G+ ++G+ +EA++ +K+M   G  PD  T
Sbjct: 50  DTMITAYFESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFT 109

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
            + LL  C+    +  G    H+ + +  L   +     L+DLY + G + +A ++ +  
Sbjct: 110 MVSLLSACAELATLVLG-RRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEM 168

Query: 354 SPSDPVL-WRTLLGSCKIHRNVEIGEIAMKNL--VQLEAASAGDYVLLATIYACT 405
                V+ W +L+    ++     G+ A+++   ++ E     +   +  +YAC+
Sbjct: 169 GIERNVVSWTSLIVGLAVNG---FGKEALEHFKDMEREGLVPSEITFVGVLYACS 220


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/541 (36%), Positives = 315/541 (58%), Gaps = 18/541 (3%)

Query: 26  LLNSYA-ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMAS 83
           L+N YA  SV  S+  A+ +F+QI +    +W ++I  + Q      +A+  +  M++  
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTH 371

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
           +  P+ FTF+ TLKAC  + AL   +++    ++ G+     V+ +L+  YA +G I+ A
Sbjct: 372 VI-PNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDA 430

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           R  FD + E++L+S+N++I  Y +     EAL+L+  +  + +G   FT   LLS  A +
Sbjct: 431 RKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASI 490

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           G +  G  +H    + G   +  V NAL+ MY++CGN++SAF VF  M  R+V+SW S+I
Sbjct: 491 GTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSII 550

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            G+  HG   +A+  F +ML  G  P+ +T++ +L  CSH GLV EG ++F  M + + +
Sbjct: 551 TGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGV 610

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
            P ++HY C+VD+ GR+G L +A++ IN+    +D ++WRT LG+C++H N+E+G+ A K
Sbjct: 611 IPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAK 670

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            +++ E      Y+LL+ +YA T   + V+  RK +K   +    G SW+E+ N+VHKF 
Sbjct: 671 MIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFY 730

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
           V D SHP A  IY +L+ +  + K +GY  +  L  V     E+  EK    HSEK+A+A
Sbjct: 731 VGDTSHPKAAEIYDELQNLSVKIKKLGYVPN--LDFVLHDVEEEQKEKLLFQHSEKIAVA 788

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FGL +T     +R+ KNLR            S+A  R++IVRD  R+HH +DG CSC +Y
Sbjct: 789 FGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEY 848

Query: 551 W 551
           W
Sbjct: 849 W 849



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 163/332 (49%), Gaps = 18/332 (5%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W++++  FA +    +A+  +  M+      P+ + F    +AC   + ++    + GF
Sbjct: 135 SWSAMVSCFANNNMGFRALLTFVDMIENGY-YPNEYCFAAATRACSTAEFVSVGDSIFGF 193

Query: 115 VIRSGY-ERCVVVSTNLMRGYA-ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
           V+++GY +  V V   L+  +    G + +A  VF+ MPER+ V+W  +I+   Q  +  
Sbjct: 194 VVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAG 253

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           EA+ L+  M       D FTL  ++S+CA++  L +G  LH  A   G      VG  L+
Sbjct: 254 EAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313

Query: 233 DMYAKCGNLDSAFC----VFSRMRKRDVLSWNSMIVGYGVHGRGD-EAISFFKQMLMAGF 287
           +MYAKC ++D + C    +F ++   +V SW +MI GY   G  D EA+  F+ M++   
Sbjct: 314 NMYAKC-SVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHV 372

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC----LVDLYGRAGKL 343
            P+  TF   L  C++   +  G + F      + +K G     C    L+ +Y R+G++
Sbjct: 373 IPNHFTFSSTLKACANLAALRIGEQVF-----THAVKLGFSSVNCVANSLISMYARSGRI 427

Query: 344 EKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
           + A +  +     + + + T++ +   + N E
Sbjct: 428 DDARKAFDILFEKNLISYNTVIDAYAKNLNSE 459



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 135/272 (49%), Gaps = 5/272 (1%)

Query: 71  QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130
           +AI    HM+    S PD  T++  LK C R ++ +    +H  + +S  +   V   +L
Sbjct: 49  KAISTLEHMVHQG-SHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSL 107

Query: 131 MRGYAANGVIEAARSVFDNM-PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           +  Y+  G  E A S+F  M   RDL+SW++++SC+   +    AL  +  M       +
Sbjct: 108 ISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPN 167

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKC-GNLDSAFCV 247
            +       +C+    +++G  +     + G+++S V VG  L+DM+ K  G+L SAF V
Sbjct: 168 EYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKV 227

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F +M +R+ ++W  MI      G   EAI  F +M+++G+ PD  T  G++  C++  L+
Sbjct: 228 FEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELL 287

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
             G +  H    R+ L        CL+++Y +
Sbjct: 288 LLG-QQLHSQAIRHGLTLDRCVGCCLINMYAK 318



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 4/196 (2%)

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           +A+   E M  +    D  T    L  C    + ++G  +H    +          N+L+
Sbjct: 49  KAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLI 108

Query: 233 DMYAKCGNLDSAFCVFSRM-RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
            +Y+KCG  + A  +F  M   RD++SW++M+  +  +  G  A+  F  M+  G++P+ 
Sbjct: 109 SLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNE 168

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-LVDLYGRA-GKLEKALEV 349
             F      CS    V  G   F  +V    L+  +   GC L+D++ +  G L  A +V
Sbjct: 169 YCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVC-VGCGLIDMFVKGRGDLVSAFKV 227

Query: 350 INTSSPSDPVLWRTLL 365
                  + V W  ++
Sbjct: 228 FEKMPERNAVTWTLMI 243



 Score = 38.5 bits (88), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 7/143 (4%)

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +GR  +AIS  + M+  G HPD  T+   L  C      + G    H  +++ +L+    
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGT-LVHEKLTQSDLQLDSV 102

Query: 329 HYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
               L+ LY + G+ EKA  +     S  D + W  ++ SC  + N  +G  A+   V +
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMV-SCFANNN--MGFRALLTFVDM 159

Query: 388 --EAASAGDYVLLATIYACTKDE 408
                   +Y   A   AC+  E
Sbjct: 160 IENGYYPNEYCFAAATRACSTAE 182


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 195/526 (37%), Positives = 307/526 (58%), Gaps = 18/526 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQ LF++I      +WN++I  +A++ +  +A+  +  M+  ++ RPD  T    + AC 
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNI-RPDESTMVTVVSACA 277

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +  ++   +++H ++   G+   + +  +LM  Y+  G +E A  +F+ +  +D++SWN+
Sbjct: 278 QSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNT 337

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE-- 218
           +I  YT  + + EAL L++ M       +  T++ +L +CAH+GA+++G ++H    +  
Sbjct: 338 LIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 397

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
                +  +  +L+DMYAKCG++++A  VF+ +  + + SWN+MI G+ +HGR D A   
Sbjct: 398 KSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDI 457

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M   G  PD ITF+GLL  CS  G+++ G   F  M   Y + P ++HYGC++DL G
Sbjct: 458 FSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLG 517

Query: 339 RAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
            +G  ++A E+IN      D V+W +LL +CKI  NVE+GE   +NL+++E  + G YVL
Sbjct: 518 HSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVL 577

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ IYA       VA+ R L+   G+K  PG S IEI + VH+F++ DK HP    IY  
Sbjct: 578 LSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 637

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           LEE+    +  G+  D S   V     E++ E +  +HSEKLAIAFGL +T  GT L IV
Sbjct: 638 LEEMEVLLEKAGFVPDTS--EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 695

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S  Y R++I RDR R+HHFRDG+CSC DYW
Sbjct: 696 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 193/349 (55%), Gaps = 37/349 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA  +F  IQ P    WN++ R  A S  P+ A+  Y  M+   L  P+++TF F LK
Sbjct: 84  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGL-LPNSYTFPFLLK 142

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           +C + KA  + Q++HG V++ GY+                               R VV 
Sbjct: 143 SCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVS 202

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L++GYA+ G IE+A+ +FD +P +D+VSWN++IS Y +   + EAL+L++ M   ++
Sbjct: 203 YTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNI 262

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T+V ++S+CA  G++ +G  +H    + GF  ++ + N+L+D+Y+KCG L++A  
Sbjct: 263 RPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACG 322

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F  +  +DV+SWN++I GY       EA+  F++ML +G  P+ +T L +L  C+H G 
Sbjct: 323 LFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGA 382

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYG---CLVDLYGRAGKLEKALEVINT 352
           ++ G  + H+ + +  LK           L+D+Y + G +E A +V N+
Sbjct: 383 IDIG-RWIHVYIDK-RLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNS 429


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 199/518 (38%), Positives = 304/518 (58%), Gaps = 25/518 (4%)

Query: 56  WNSLIRAF----AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111
           WN+LIRA     AQ   P  +       +     +PD  TF F L++      L+  + +
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           H  ++R G      V T+L+  Y+++G+++ AR++F  MPER+++SW+ +I+ Y +   +
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQY 146

Query: 172 LEALKLYERMRF---EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
            EAL L+  M+     DV  + FT+  +L++C  +GAL  G + H    + G    V +G
Sbjct: 147 KEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLG 206

Query: 229 NALVDMYAKCGNLDSAFCVFSRM-RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
            AL+DMYAKCG+++ A  VFS +   +DV++W++MI G  +HG  +E +  F +M+  G 
Sbjct: 207 TALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGV 266

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            P+++TFL + C C H GLV EG +Y   M   Y++ P I+HYGC+VDLYGRAG++++A 
Sbjct: 267 RPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAW 326

Query: 348 EVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
            V+  S P +P  ++W  LL   ++H ++E  E+A+K L++LE  ++G YVLL+ +YA  
Sbjct: 327 NVVK-SMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKR 385

Query: 406 KDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRA 465
              E V   R L+++ GIK  PG S IE+G  +H+F V D SHP+   I+  LEEI+ R 
Sbjct: 386 GRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERL 445

Query: 466 KFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---- 521
           K  GY  +   V +     E+  E + + HSEKLA+A+G   T  GT +RIVKNLR    
Sbjct: 446 KVEGYVGNTKEVLL--DLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRD 503

Query: 522 --------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                   S  + R++IVRD  R+HHF  GLCSC DYW
Sbjct: 504 CHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 219/580 (37%), Positives = 313/580 (53%), Gaps = 48/580 (8%)

Query: 19  HEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ-SLSPLQAIFYYN 77
           H I    LL     S   SLSYA  LF+QI  P    +N++I+A A    S   ++  + 
Sbjct: 46  HPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFL 105

Query: 78  HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
            M+  S   P+ +TF F  KAC     + + +++    I+ G E  + V+  ++R YA  
Sbjct: 106 SMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANW 165

Query: 138 GVIEAARSVFD-------------------------------NMPERDLVSWNSIISCYT 166
           G+++ AR VFD                                M ERD+VSW +II+ Y 
Sbjct: 166 GLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYV 225

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
           Q     EAL L+  M       + FTL   L++CA++ AL+ G ++H    +     +  
Sbjct: 226 QVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNER 285

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMR--KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           +  +L+DMYAKCG +D A  VF      K  V  WN+MI GY +HG+  EAI  F+QM +
Sbjct: 286 LLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKV 345

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
               P+ +TF+ LL  CSH  LVEEG  YF  M S Y ++P I+HYGC+VDL GR+G L+
Sbjct: 346 EKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLK 405

Query: 345 KALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403
           +A E V N     D  +W  LLG+C+IH+++E G+   K + +L++   G +VLLA +Y+
Sbjct: 406 EAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYS 465

Query: 404 CTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMH 463
            +   +     R+ I+ +G K TPG S IE+    H+F+V D+SHP    +Y  L+E+  
Sbjct: 466 ASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTT 525

Query: 464 RAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-- 521
           + K  GY  +   V +     ED  E + + HSEKLAIAFGL  TP GT++RIVKNLR  
Sbjct: 526 KLKNAGYVPEFGEVLLDIDDEED-KETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVC 584

Query: 522 ----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                     S  Y R++IVRDR+RYHHF+DG CSC DYW
Sbjct: 585 ADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 163/371 (43%), Gaps = 45/371 (12%)

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN--GVIEAARSVFDNMP 151
           F+L++C   K++N+ ++ H  +I +G     + +  L++   A+  G +  A  +FD +P
Sbjct: 20  FSLESC---KSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIP 76

Query: 152 ERDLVSWNSIISCYT--QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           + D+  +N++I  +     S H         +R      + +T V +  +C +   +  G
Sbjct: 77  KPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEG 136

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS-------------------- 249
             +   A ++G   +++V NA++ MYA  G +D A  VF                     
Sbjct: 137 EQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGS 196

Query: 250 -----------RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
                       M +RDV+SW ++I GY   G   EA+  F +ML  G  P+  T    L
Sbjct: 197 GEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASAL 256

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C++   +++G  + H+ + +  +K   +    L+D+Y + G+++ A +V +       
Sbjct: 257 AACANLVALDQG-RWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKL 315

Query: 359 VL--WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVAR 413
            +  W  ++G   +H   +   I +   +++E  S      +A + AC+     EEG   
Sbjct: 316 KVWPWNAMIGGYAMHGKSKEA-IDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGY 374

Query: 414 TRKLIKSNGIK 424
            + +  S GI+
Sbjct: 375 FKSMASSYGIE 385



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 127/276 (46%), Gaps = 10/276 (3%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLNSYAISV-----SSSLSYAQLLFNQIQNPQTQAWN 57
           ++ +A +  +++AR+  +   +  L S+ I +     S  +  A+ +F+++      +W 
Sbjct: 159 IRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWT 218

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
           ++I  + Q     +A+  ++ ML      P+ FT    L AC  + AL++ + +H ++ +
Sbjct: 219 TIIAGYVQVGCFKEALDLFHEMLQTG-PPPNEFTLASALAACANLVALDQGRWIHVYIDK 277

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV--SWNSIISCYTQASFHLEAL 175
           S  +    +  +L+  YA  G I+ A  VF +     L    WN++I  Y       EA+
Sbjct: 278 SEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAI 337

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEMGFVESVYVGNALVDM 234
            L+E+M+ E V  +  T V LL++C+H   +  G  +   +A   G    +     +VD+
Sbjct: 338 DLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDL 397

Query: 235 YAKCGNLDSA-FCVFSRMRKRDVLSWNSMIVGYGVH 269
             + G L  A   VF+     D   W +++    +H
Sbjct: 398 LGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIH 433


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 214/563 (38%), Positives = 312/563 (55%), Gaps = 25/563 (4%)

Query: 4   KKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           K HAR   L      H +    LL S A S  +SLSYA+ +F+ I  P T A+N++IRA 
Sbjct: 6   KLHARL--LKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAH 63

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           A S        +   M MA +S PD FTF F LKAC R   L    +LH  + + G++  
Sbjct: 64  ADSSPSFSLSLFSK-MTMAGVS-PDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDSD 118

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V V   L+  Y   G ++ A   F+ MPERDLVSW+S+I+C+ +  F  EAL L++RM+ 
Sbjct: 119 VYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQL 178

Query: 184 -EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
              V  D   ++ ++S+ + +G L +G ++       G   +V +G ALVDM+++CG ++
Sbjct: 179 VGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIE 238

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            +  VF  M +R+VL+W ++I G  VHGR  EA+  F +M   GF PD +TF G+L  CS
Sbjct: 239 ESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACS 298

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VL 360
           H GLV EG   F  + + Y ++P  +HYGC+VDL GRAG L +A + ++   P  P  ++
Sbjct: 299 HGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVD-GMPIRPNSII 357

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           WRTLLG+C  H  +E+ E   + + +L++   GDYVLL+ +Y         A  R  ++ 
Sbjct: 358 WRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMRE 417

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
             I   PG S I + + +H+FV  D +HP  + I   L  ++   K +GYT D S V   
Sbjct: 418 KRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFD 477

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
               E   E +  YHSEKLA+AF L    D  ++R++KNLR            S  + R+
Sbjct: 478 IEEEEK--ESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFERE 535

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +I+RDR R+HHF  G CSC DYW
Sbjct: 536 IIIRDRNRFHHFSKGSCSCRDYW 558


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 203/525 (38%), Positives = 295/525 (56%), Gaps = 18/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F  +      AWN++IR F  S    +A   ++ ML   ++ PD  T+T  L AC 
Sbjct: 284 AREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVA-PDRATYTTVLSACA 342

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R   L + +E+H    + G    V     L+  Y+  G ++ AR VFD MP+RD+VSW +
Sbjct: 343 RPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTT 402

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  Y      +E+   +++M  + V  +  T +C+L +C++  AL  G  +H    + G
Sbjct: 403 LLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAG 462

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            +  + V NAL+ MY KCG+++ A  VF  M  RDV++WN++I G G +GRG EA+  ++
Sbjct: 463 LLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYE 522

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            M   G  P++ TF+ +L  C    LVEEG   F  M   Y + P  KHY C+VD+  RA
Sbjct: 523 VMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARA 582

Query: 341 GKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G L +A +VI T  P  P   +W  LL +C+IH NVEIGE A ++ ++LE  +AG YV L
Sbjct: 583 GHLREAEDVILT-IPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSL 641

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + IYA       VA+ RK +K  G+K  PG SWIEI  +VH FV  D+SHP    IY +L
Sbjct: 642 SAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAEL 701

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           E +  + K +GY  D   V       ++  E++  +HSEKLAIA+GL +TP GT +RI K
Sbjct: 702 ETLKKQMKSLGYVPDTRFVM--HDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISK 759

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S    R++I RD  R+HHF++G CSCGDYW
Sbjct: 760 NLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 180/344 (52%), Gaps = 4/344 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA     S+  A+ +F+ + +    +W +L  A+A+S    +++  Y+ ML  
Sbjct: 167 GNALISMYA--KCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQE 224

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            + RP   T+   L AC  + AL K +++H  ++ S Y   V VST L + Y   G  + 
Sbjct: 225 RV-RPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKD 283

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR VF+ +  RD+++WN++I  +  +    EA   + RM  E V  D  T   +LS+CA 
Sbjct: 284 AREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACAR 343

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
            G L  G  +H  A + G V  V  GNAL++MY+K G++  A  VF RM KRDV+SW ++
Sbjct: 344 PGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTL 403

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           +  Y    +  E+ + FKQML  G   + IT++ +L  CS+   ++ G E  H  V +  
Sbjct: 404 LGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKE-IHAEVVKAG 462

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           L   +     L+ +Y + G +E A+ V    S  D V W TL+G
Sbjct: 463 LLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIG 506



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 173/369 (46%), Gaps = 3/369 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S++ A+ LF++  N    +WN +I  +A      +A   +  M    L  PD FTF   L
Sbjct: 78  SVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLE-PDKFTFVSIL 136

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC     LN  +E+H  V+ +G      V   L+  YA  G +  AR VFD M  RD V
Sbjct: 137 SACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEV 196

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW ++   Y ++ +  E+LK Y  M  E V     T + +LS+C  + AL  G  +H   
Sbjct: 197 SWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHI 256

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            E  +   V V  AL  MY KCG    A  VF  +  RDV++WN+MI G+   G+ +EA 
Sbjct: 257 VESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAH 316

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F +ML  G  PD  T+  +L  C+  G +  G E  H   ++  L   ++    L+++
Sbjct: 317 GTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKE-IHARAAKDGLVSDVRFGNALINM 375

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           Y +AG ++ A +V +     D V W TLLG       V       K ++Q +   A    
Sbjct: 376 YSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQ-QGVKANKIT 434

Query: 397 LLATIYACT 405
            +  + AC+
Sbjct: 435 YMCVLKACS 443



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 163/334 (48%), Gaps = 11/334 (3%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D++ +   L++C + K L   +++H  ++R G +  V ++  L++ YA  G +  AR +F
Sbjct: 27  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D    + +VSWN +IS Y       EA  L+  M+ E +  D FT V +LS+C+    LN
Sbjct: 87  DKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLN 146

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  +H    E G      VGNAL+ MYAKCG++  A  VF  M  RD +SW ++   Y 
Sbjct: 147 WGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 206

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKPG 326
             G G+E++  +  ML     P  IT++ +L  C     +E+G + + H++ S Y+    
Sbjct: 207 ESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYH--SD 264

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV- 385
           ++    L  +Y + G  + A EV    S  D + W T+     I   V+ G++   +   
Sbjct: 265 VRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTM-----IRGFVDSGQLEEAHGTF 319

Query: 386 --QLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
              LE   A D     T+ +      G+AR +++
Sbjct: 320 HRMLEEGVAPDRATYTTVLSACARPGGLARGKEI 353



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 113/263 (42%), Gaps = 24/263 (9%)

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
           +D +  V LL SC     L +G  +H      G   +VY+ N L+ +YA CG+++ A  +
Sbjct: 26  VDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQL 85

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F +   + V+SWN MI GY   G   EA + F  M      PD  TF+ +L  CS   ++
Sbjct: 86  FDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVL 145

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
             G E  H+ V    L         L+ +Y + G +  A  V +  +  D V W TL G+
Sbjct: 146 NWGRE-IHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 204

Query: 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTP 427
              +     GE ++K                 T +A  ++     R  ++   N +    
Sbjct: 205 ---YAESGYGEESLK-----------------TYHAMLQER---VRPSRITYMNVLSACG 241

Query: 428 GWSWIEIGNQVHKFVVDDKSHPD 450
             + +E G Q+H  +V+ + H D
Sbjct: 242 SLAALEKGKQIHAHIVESEYHSD 264


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 208/567 (36%), Positives = 323/567 (56%), Gaps = 26/567 (4%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           +GLK H+  V   KA   H++  +  L S  +   +    A  +F+ I +    +W ++I
Sbjct: 132 LGLKIHSLLV---KAGYDHDVFVKTSLLSLYVKCDN-FDDALKVFDDIPDKNVVSWTAII 187

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             +  S    +AI  +  +L   L +PD+F+    L AC R+      + +  ++  SG 
Sbjct: 188 TGYISSGHFREAIGAFKKLLEMGL-KPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
            R V V+T+L+  Y   G +E A  +F  MPE+D+VSW+++I  Y       +AL L+ +
Sbjct: 247 GRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M+ E++  D +T+V +LS+CA +GAL++GI+   +     F+ +  +G AL+DMY+KCG+
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           +  A+ +F+ M+K+D + WN+M+VG  ++G      S F  +   G  PD  TF+GLLCG
Sbjct: 367 VTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP-- 358
           C+H G V EG ++F+ M   ++L P I+HYGC+VDL GRAG L +A ++IN + P  P  
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLIN-NMPMKPNA 485

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
           V+W  LLG CK+H++  + E  +K L++LE  ++G+YV L+ IY+     E   + R  +
Sbjct: 486 VVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTM 545

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDESL 476
           K   I+     SWIEI   VH+F+V DKSH  ++ IY KL+E+    K +G+  T +  L
Sbjct: 546 KEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVL 605

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
             +     E FL     YHSEKLA+AFGL  +P    +R+VKNLR            S  
Sbjct: 606 FDIEEEEKEHFL----GYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKI 661

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             R++I+RD  R+H F DG CSC DYW
Sbjct: 662 TKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 177/329 (53%), Gaps = 2/329 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S +Y++L+F+Q++ P    WN++IR          AI  Y  M       P+ FT  F L
Sbjct: 63  STNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGF-LPNNFTIPFVL 121

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           KAC R   +    ++H  ++++GY+  V V T+L+  Y      + A  VFD++P++++V
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW +II+ Y  +    EA+  ++++    +  D F+LV +L++CA +G    G ++ R  
Sbjct: 182 SWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYI 241

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + G   +V+V  +L+DMY KCGNL+ A  +FS M ++D++SW++MI GY  +G   +A+
Sbjct: 242 SDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQAL 301

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F QM      PD  T +G+L  C+  G ++ G+ +   ++ R            L+D+
Sbjct: 302 DLFFQMQSENLKPDCYTMVGVLSACATLGALDLGI-WASSLMDRNEFLSNPVLGTALIDM 360

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           Y + G + +A E+       D V+W  ++
Sbjct: 361 YSKCGSVTQAWEIFTAMKKKDRVVWNAMM 389


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 216/596 (36%), Positives = 319/596 (53%), Gaps = 56/596 (9%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLNSYAISVS-----SSLSYAQLLFNQIQNPQTQAWN 57
           L  + R   L +AR+  E   +W L S    +      + L  A+ LF+QI      +WN
Sbjct: 164 LAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWN 223

Query: 58  SLIRAFAQS-----------LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV-KAL 105
           ++I  +AQ             SP++ +F +  M+ A       +     L    RV   +
Sbjct: 224 TMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYA-------YVQDGMLDEARRVFDEM 276

Query: 106 NKCQELHGFVIRSGYER----------------CVVVSTNLM-RGYAANGVIEAARSVFD 148
            + +E+   V+ +GY +                  + S N+M  GY  NG +  AR++FD
Sbjct: 277 PQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFD 336

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            MP+RD VSW +II+ Y Q   + EA+ +   M+ +   L+  T  C LS+CA + AL +
Sbjct: 337 MMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALEL 396

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G  +H      G+ +   VGNALV MY KCG +D A+ VF  ++ +D++SWN+M+ GY  
Sbjct: 397 GKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYAR 456

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           HG G +A++ F+ M+ AG  PD IT +G+L  CSH GL + G EYFH M   Y + P  K
Sbjct: 457 HGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSK 516

Query: 329 HYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
           HY C++DL GRAG LE+A  +I N     D   W  LLG+ +IH N+E+GE A + + ++
Sbjct: 517 HYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKM 576

Query: 388 EAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKS 447
           E  ++G YVLL+ +YA +     V++ R  ++  G++ TPG+SW+E+ N++H F V D  
Sbjct: 577 EPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCF 636

Query: 448 HPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLAT 507
           HP+   IY  LEE+  + K  GY     LV       E   +    YHSEKLA+AFG+ T
Sbjct: 637 HPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEK--KHMLKYHSEKLAVAFGILT 694

Query: 508 TPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            P G  +R++KNLR            S    R +IVRD  RYHHF +G+CSC DYW
Sbjct: 695 MPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 163/375 (43%), Gaps = 43/375 (11%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           W L     + +  L  A++LF+ +      +WN+++  + +S    +A   ++ M     
Sbjct: 98  WNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM----- 152

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN-LMRGYAANGVIEAA 143
              ++ ++   L A  R   L + + L  F  +S +E   ++S N LM GY    ++  A
Sbjct: 153 PHKNSISWNGLLAAYVRSGRLEEARRL--FESKSDWE---LISCNCLMGGYVKRNMLGDA 207

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           R +FD +P RDL+SWN++IS Y Q     +A +L+E     DV    FT   ++ +    
Sbjct: 208 RQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV----FTWTAMVYAYVQD 263

Query: 204 GALN--------------------MGIFLHRIACEMG---FVESVYVG----NALVDMYA 236
           G L+                    +  +      +MG   F E  +      N ++  Y 
Sbjct: 264 GMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYC 323

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           + G+L  A  +F  M +RD +SW ++I GY  +G  +EA++   +M   G   +  TF  
Sbjct: 324 QNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCC 383

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
            L  C+    +E G +  H  V R   + G      LV +Y + G +++A +V       
Sbjct: 384 ALSACADIAALELGKQ-VHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHK 442

Query: 357 DPVLWRTLLGSCKIH 371
           D V W T+L     H
Sbjct: 443 DIVSWNTMLAGYARH 457



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 149/349 (42%), Gaps = 31/349 (8%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  +F+ +    + ++N++I  + ++     A F     L   +   D F++   L    
Sbjct: 52  ALCVFDAMPLRNSVSYNAMISGYLRN-----AKFSLARDLFDKMPHKDLFSWNLMLTGYA 106

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R + L   + L      S  E+ VV    ++ GY  +G ++ AR VFD MP ++ +SWN 
Sbjct: 107 RNRRLRDARML----FDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNG 162

Query: 161 IISCYTQASFHLEALKLYE-RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           +++ Y ++    EA +L+E +  +E +  +     CL+        L       R   + 
Sbjct: 163 LLAAYVRSGRLEEARRLFESKSDWELISCN-----CLMGGYVKRNMLGDA----RQLFDQ 213

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
             V  +   N ++  YA+ G+L  A  +F     RDV +W +M+  Y   G  DEA   F
Sbjct: 214 IPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVF 273

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
            +M         +++  ++ G +    ++ G E F  M       P I  +  ++  Y +
Sbjct: 274 DEMP----QKREMSYNVMIAGYAQYKRMDMGRELFEEMPF-----PNIGSWNIMISGYCQ 324

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
            G L +A  + +     D V W  ++     +    + E AM  LV+++
Sbjct: 325 NGDLAQARNLFDMMPQRDSVSWAAIIAG---YAQNGLYEEAMNMLVEMK 370



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 117/284 (41%), Gaps = 53/284 (18%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
            V  T  +  +  NG  + A  VFD MP R+ VS+N++IS Y + +    A  L+++M  
Sbjct: 33  TVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPH 92

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           +D                                       ++  N ++  YA+   L  
Sbjct: 93  KD---------------------------------------LFSWNLMLTGYARNRRLRD 113

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F  M ++DV+SWN+M+ GY   G  DEA   F +M     H +SI++ GLL     
Sbjct: 114 ARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP----HKNSISWNGLLAAYVR 169

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
            G +EE    F    S+ + +  +    CL+  Y +   L  A ++ +     D + W T
Sbjct: 170 SGRLEEARRLFE---SKSDWE--LISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNT 224

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407
           ++         + G+++    +  E+     +   A +YA  +D
Sbjct: 225 MISG-----YAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQD 263


>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
          Length = 580

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 205/526 (38%), Positives = 303/526 (57%), Gaps = 29/526 (5%)

Query: 48  IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL-SRPDTFTFTFTLKACERVKALN 106
           +  P T   N+ +R  A S  P +++      L+ +L  RPD  + +F LKA  R    +
Sbjct: 62  LPTPATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAH 121

Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
              +LH  V+R G    V + T L+  YA  G + +AR VFD M  RD+ +WNS+++   
Sbjct: 122 TTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLA 181

Query: 167 QASFHLEALKLYERM--RFEDVG----LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           Q +    AL L+ R+   F+++      +  T+V  LS+CA +G L  G+++H  A   G
Sbjct: 182 QGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFG 241

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD--VLSWNSMIVGYGVHGRGDEAISF 278
              +V V N+L+DMY+KCG+L  A  VF  ++  D  ++S+N+ I  + +HG G +A+  
Sbjct: 242 LDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRL 301

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M      PD +T+L +LCGC+H GLV++G+  F+ M     + P +KHYG +VDL G
Sbjct: 302 FDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSM----RVAPNMKHYGTIVDLLG 356

Query: 339 RAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
           RAG+L +A + VI+   P+D VLW+TLLG+ K+H  VE+ E+A   L +L +   GDYVL
Sbjct: 357 RAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVL 416

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ +YA       V R R  ++SN ++  PG+S+ EI   +HKF+  DK HP    IYR 
Sbjct: 417 LSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRA 476

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           LE+I+ R   +GY  + S   V     E+  + +  YHSEKLAIAFGL  TP G +LR++
Sbjct: 477 LEDIVSRISELGYEPETS--NVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVI 534

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S AY R +++RDR R+H F DG CSC DYW
Sbjct: 535 KNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 580


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 216/593 (36%), Positives = 323/593 (54%), Gaps = 67/593 (11%)

Query: 6   HARYVGLN-KARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFA 64
           H RY  LN K  +A+  HG+             + ++  LF+Q  +P    + + I   +
Sbjct: 58  HPRYPVLNLKLHRAYASHGK-------------IRHSLALFHQTIDPDLFLFTAAINTAS 104

Query: 65  QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY---- 120
            +    QA   Y  +L + ++ P+ FTF+  LK+C    +    + +H  V++ G     
Sbjct: 105 INGLKDQAFLLYVQLLSSQIN-PNEFTFSSILKSC----STKSGKLIHTHVLKFGLGLDP 159

Query: 121 ---------------------------ERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
                                      ER +V ST ++  YA  G +EAAR++FD M ER
Sbjct: 160 YVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCER 219

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           D+VSWN +I  Y+Q  F  +AL L++++  +     D  T+V  LS+C+ +GAL  G ++
Sbjct: 220 DIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWI 279

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H          +V V  AL+DMY+KCG+L+ A  VF+   ++D+++WN+MI GY +HG  
Sbjct: 280 HVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYS 339

Query: 273 DEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
            +A+  F +M  + G  P  ITF+G L  C+H GLV EG++ F  M   Y +KP I+HYG
Sbjct: 340 QDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYG 399

Query: 332 CLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           CLV L GRAG+L++A E+I N +  +D VLW ++LGSCK+H    +G+   + L+    +
Sbjct: 400 CLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNIS 459

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           ++G YVLL+ IYA   D EGVA+ R L+K  GI   PG S IEI N+VH+F   D+ H  
Sbjct: 460 NSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLK 519

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
           +  IY  L ++  R K  GY  + + V      +E   E+S   HSE+LAIA+GL +T  
Sbjct: 520 SKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEK--ERSLQVHSERLAIAYGLISTKP 577

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G+ L+I KNLR            S    R +++RDR R+HHF DG CSC D+W
Sbjct: 578 GSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 158/359 (44%), Gaps = 43/359 (11%)

Query: 104 ALNKCQELHGFVIRSG---YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++++  ++H  ++R     + R  V++  L R YA++G I  + ++F    + DL  + +
Sbjct: 39  SVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTA 98

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
            I+  +      +A  LY ++    +  + FT   +L SC    +   G  +H    + G
Sbjct: 99  AINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSC----STKSGKLIHTHVLKFG 154

Query: 221 FVESVYVGNALVDMYAK---------------------------C----GNLDSAFCVFS 249
                YV   LVD+YAK                           C    GN+++A  +F 
Sbjct: 155 LGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFD 214

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVE 308
           RM +RD++SWN MI GY  HG   +A+  F+++L  G   PD IT +  L  CS  G +E
Sbjct: 215 RMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALE 274

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            G  + H+ V+   ++  +K    L+D+Y + G LE+A+ V N +   D V W  ++   
Sbjct: 275 TG-RWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGY 333

Query: 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIK 424
            +H   +        +  +      D   + T+ AC       EG+     + +  GIK
Sbjct: 334 AMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIK 392


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 203/556 (36%), Positives = 310/556 (55%), Gaps = 49/556 (8%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+LLF+++ +P   AWN +I  + Q+     A+  +  M  + + +PD+      L AC 
Sbjct: 175 ARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDM-KPDSVILCTVLSACG 233

Query: 101 RVKALNKCQELHGFVIRSGY-------------------------------ERCVVVSTN 129
               L+  + +H FV  +GY                                + ++VST 
Sbjct: 234 HAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTA 293

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           ++ GYA  G+++ AR +FD M ERDLV W+++IS Y ++    EALKL++ M  +    D
Sbjct: 294 MLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPD 353

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
             T++ ++S+C+HVGAL    ++H      GF  ++ V NAL+DMYAKCGNL  A  VF 
Sbjct: 354 QITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFE 413

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            M +++V+SW+SMI  + +HG  D AI  F++M      P+ +TF+G+L  C H GLVEE
Sbjct: 414 NMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEE 473

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGS 367
           G + F  M++ + + P  +HYGC+VDLY RA  L KA+E+I T  P  P  ++W +L+ +
Sbjct: 474 GEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIET-MPFAPNVIIWGSLMSA 532

Query: 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTP 427
           C++H   E+GE A K L++LE    G  V+L+ IYA  K    V   RK +   GI    
Sbjct: 533 CQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEK 592

Query: 428 GWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDF 487
             S IEI NQVH F++ D+ H  +D IY KL+E++ + K +GY    S + +     E+ 
Sbjct: 593 ASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILI--DLEEED 650

Query: 488 LEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRV 535
            ++   +HSEKLA+ +GL +  + + +RIVKNLR            S  Y  +++VRDR 
Sbjct: 651 KKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRT 710

Query: 536 RYHHFRDGLCSCGDYW 551
           R+HH   G+CSC DYW
Sbjct: 711 RFHHCSGGICSCRDYW 726



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 192/417 (46%), Gaps = 36/417 (8%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+QI NP T   N L+R  ++S  P + IF Y+++   +    D F+F   LKA  +V 
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           A N   E+HG   + G+     + T L+  YA+   I  AR +FD M   D V+WN II 
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIID 195

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y Q   + +AL+L+E MR  D+  D   L  +LS+C H G L+ G  +H    + G+  
Sbjct: 196 GYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAI 255

Query: 224 SVYVGNALVDMYAKCGNLD-------------------------------SAFCVFSRMR 252
             ++  AL++MYA CG +D                                A  +F +M 
Sbjct: 256 DSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMI 315

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           +RD++ W++MI GY    +  EA+  F +ML     PD IT L ++  CSH G + +   
Sbjct: 316 ERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQA-N 374

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372
           + H  V R      +     L+D+Y + G L KA EV       + + W +++ +  +H 
Sbjct: 375 WIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHG 434

Query: 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTT 426
           N +      + + ++     G    +  +YAC      EEG      +I  +GI  T
Sbjct: 435 NADSAIKLFRRMKEVNIEPNG-VTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPT 490


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/511 (38%), Positives = 302/511 (59%), Gaps = 21/511 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W ++I    Q+     A+  ++ M    +  P+ FT++  LKA   +       ++H  
Sbjct: 371 SWTAIISGCIQNGDIPLAVVLFSRMREDRV-MPNEFTYSAMLKASLSILP----PQIHAQ 425

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           VI++ Y+    V T L+  Y+  G  E A S+F  + ++D+V+W++++SC+ QA     A
Sbjct: 426 VIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGA 485

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALVD 233
             L+ +M  + +  + FT+  ++ +CA   A ++ G   H I+ +  + +++ V +ALV 
Sbjct: 486 TYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVS 545

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY++ GN+DSA  VF R   RD++SWNSMI GY  HG   +AI  F+QM  +G   D +T
Sbjct: 546 MYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVT 605

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NT 352
           FL ++ GC+H GLV EG +YF  MV  + + P ++HY C+VDLY RAGKL++ + +I + 
Sbjct: 606 FLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDM 665

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
             P+  ++WRTLLG+C++H+NVE+G+ +   L+ LE   +  YVLL+ IYA     +   
Sbjct: 666 PFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERD 725

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
             RKL+    +K   G SWI+I N+VH F+  DKSHP +D IY+KL+ I+ R K  GY+ 
Sbjct: 726 EVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSP 785

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           + S V      +ED  E     HSE+LA+AFGL  TP GT L+IVKNLR           
Sbjct: 786 NTSFVL--HDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKM 843

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S+   R++I+RD  R+HHF  G CSCGD+W
Sbjct: 844 VSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 146/283 (51%), Gaps = 3/283 (1%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGVIEAARSV 146
           D+ T +  LKAC  V      ++LH   ++ G++R  V   T+L+  Y   G +     V
Sbjct: 98  DSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEV 157

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           F+ MP++++V+W S+++    A  H E + L+ RMR E +  + FT   +LS+ A  GAL
Sbjct: 158 FEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGAL 217

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
           ++G  +H  + + G   SV+V N+L++MYAKCG ++ A  VF+ M  RD++SWN+++ G 
Sbjct: 218 DLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGL 277

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
            ++    EA+  F +           T+  ++  C++   +    +  H  V ++     
Sbjct: 278 QLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLT 336

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL-WRTLLGSC 368
                 L D Y + G+L  AL + + ++ S  V+ W  ++  C
Sbjct: 337 GNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGC 379



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 167/378 (44%), Gaps = 14/378 (3%)

Query: 44  LFNQIQNPQTQAWNSLIR--AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101
           +F  +       W SL+   A AQ  S + A+F+    + A    P+ FTF   L A   
Sbjct: 157 VFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFR---MRAEGIWPNPFTFASVLSAVAS 213

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161
             AL+  Q +H   ++ G    V V  +LM  YA  G++E A+SVF+ M  RD+VSWN++
Sbjct: 214 QGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTL 273

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           ++        LEAL+L+   R     +   T   ++  CA++  L +   LH    + GF
Sbjct: 274 MAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGF 333

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFK 280
             +  V  AL D Y+KCG L  A  +FS     R+V+SW ++I G   +G    A+  F 
Sbjct: 334 HLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFS 393

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG-CLVDLYGR 339
           +M      P+  T+  +L     +  +       H  V + N +  I   G  L+  Y +
Sbjct: 394 RMREDRVMPNEFTYSAML-----KASLSILPPQIHAQVIKTNYQ-HIPFVGTALLASYSK 447

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            G  E AL +       D V W  +L SC        G   + N + ++     ++ + +
Sbjct: 448 FGSTEDALSIFKMIEQKDVVAWSAML-SCHAQAGDCEGATYLFNKMAIQGIKPNEFTISS 506

Query: 400 TIYACTKDEEGVARTRKL 417
            I AC     GV + R+ 
Sbjct: 507 VIDACACPSAGVDQGRQF 524


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 211/560 (37%), Positives = 314/560 (56%), Gaps = 49/560 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A L+F++I      +WNS+I  F Q  SP +A+  +  M M + +RP+  T    L 
Sbjct: 182 LDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMEN-ARPNRVTMVGVLS 240

Query: 98  ACERVKALNKCQELHGFVIRSG--------------YERC-----------------VVV 126
           AC +   L   +    ++ R+G              Y +C                 +V 
Sbjct: 241 ACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVS 300

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF-ED 185
            T ++ GYA  G  +AAR VFD MP  D+ +WN++IS Y Q     EAL ++  ++  ++
Sbjct: 301 WTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKN 360

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
              +  TL   L++CA +GA+++G ++H    + G   + ++  +L+DMY+KCG+L+ A 
Sbjct: 361 TKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKAL 420

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  + +RDV  W++MI G  +HG G  AI  F +M      P+++TF  LLC CSH G
Sbjct: 421 EVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSG 480

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS--PSDPVLWRT 363
           LV+EG  +F+ M   Y + PG KHY C+VD+ GRAG LE+A+E+I      PS  V W  
Sbjct: 481 LVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASV-WGA 539

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LLG+C+I+ NVE+ E+A   L++ ++ + G YVLL+ IYA     + V+R R+ +K +G+
Sbjct: 540 LLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGL 599

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
           +  PG S IE+   +H+F+V D SHP +  IY KL+EI+ R K  GY  DES + +    
Sbjct: 600 EKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHL-LQFVE 658

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------SIA------YSRDLIV 531
            E   E +   HSEKLAIA+GL        +RIVKNLR      S+A      Y+RD+++
Sbjct: 659 EEYMKEHALNLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILL 718

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RDR R+HHF  G CSC DYW
Sbjct: 719 RDRYRFHHFSGGNCSCMDYW 738



 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 201/382 (52%), Gaps = 41/382 (10%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L  + A+S  SSL YA  +F+QI  P    WN+LIRAFA S  P+Q +  +  ML  S  
Sbjct: 68  LFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQR 127

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+++TF F +KA   V +L   Q +HG V+++ +   + +S +L+  Y++ G +++A  
Sbjct: 128 FPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYL 187

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF  + E+D+VSWNS+IS + Q     EAL+L++RM+ E+   +  T+V +LS+CA    
Sbjct: 188 VFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRID 247

Query: 206 LNMGIFLHRIACEM----GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
           L  G    R AC+     G   ++ + NA++DMY KCG+L+ A  +F +M ++D++SW +
Sbjct: 248 LEFG----RWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTT 303

Query: 262 MIVGYG-------------------------------VHGRGDEAISFFKQM-LMAGFHP 289
           MI GY                                 +G+  EA++ F+++ L     P
Sbjct: 304 MIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKP 363

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           + +T    L  C+  G ++ G  + H+ + +  +K        L+D+Y + G LEKALEV
Sbjct: 364 NEVTLASTLAACAQLGAMDLG-GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEV 422

Query: 350 INTSSPSDPVLWRTLLGSCKIH 371
             +    D  +W  ++    +H
Sbjct: 423 FYSVERRDVFVWSAMIAGLAMH 444



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 141/278 (50%), Gaps = 7/278 (2%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA--ANGVIEAARSVFD 148
           T    +  C   K L   ++LH  ++R+G       +T L    A  +   ++ A  VFD
Sbjct: 32  TVPILIDKCANKKHL---KQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFD 88

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL-DGFTLVCLLSSCAHVGALN 207
            +P  +L +WN++I  +  +   ++ L ++ +M  E     + +T   ++ +   V +L 
Sbjct: 89  QIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLL 148

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  +H +  +  F   +++ N+L+  Y+  G+LDSA+ VFS++ ++D++SWNSMI G+ 
Sbjct: 149 AGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFV 208

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
             G  +EA+  FK+M M    P+ +T +G+L  C+ +  +E G  +    + R  +   +
Sbjct: 209 QGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFG-RWACDYIERNGIDINL 267

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                ++D+Y + G LE A  + +     D V W T++
Sbjct: 268 ILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMI 305


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/511 (38%), Positives = 302/511 (59%), Gaps = 21/511 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W ++I    Q+     A+  ++ M    +  P+ FT++  LKA   +       ++H  
Sbjct: 371 SWTAIISGCIQNGDIPLAVVLFSRMREDRV-MPNEFTYSAMLKASLSILP----PQIHAQ 425

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           VI++ Y+    V T L+  Y+  G  E A S+F  + ++D+V+W++++SC+ QA     A
Sbjct: 426 VIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGA 485

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALVD 233
             L+ +M  + +  + FT+  ++ +CA   A ++ G   H I+ +  + +++ V +ALV 
Sbjct: 486 TYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVS 545

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY++ GN+DSA  VF R   RD++SWNSMI GY  HG   +AI  F+QM  +G   D +T
Sbjct: 546 MYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVT 605

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NT 352
           FL ++ GC+H GLV EG +YF  MV  + + P ++HY C+VDLY RAGKL++ + +I + 
Sbjct: 606 FLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDM 665

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
             P+  ++WRTLLG+C++H+NVE+G+ +   L+ LE   +  YVLL+ IYA     +   
Sbjct: 666 PFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERD 725

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
             RKL+    +K   G SWI+I N+VH F+  DKSHP +D IY+KL+ I+ R K  GY+ 
Sbjct: 726 EVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSP 785

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           + S V      +ED  E     HSE+LA+AFGL  TP GT L+IVKNLR           
Sbjct: 786 NTSFVL--HDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKM 843

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S+   R++I+RD  R+HHF  G CSCGD+W
Sbjct: 844 VSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 146/283 (51%), Gaps = 3/283 (1%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGVIEAARSV 146
           D+ T +  LKAC  V      ++LH   ++ G++R  V   T+L+  Y   G +     V
Sbjct: 98  DSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEV 157

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           F+ MP++++V+W S+++    A  H E + L+ RMR E +  + FT   +LS+ A  GAL
Sbjct: 158 FEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGAL 217

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
           ++G  +H  + + G   SV+V N+L++MYAKCG ++ A  VF+ M  RD++SWN+++ G 
Sbjct: 218 DLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGL 277

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
            ++    EA+  F +           T+  ++  C++   +    +  H  V ++     
Sbjct: 278 QLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLT 336

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL-WRTLLGSC 368
                 L D Y + G+L  AL + + ++ S  V+ W  ++  C
Sbjct: 337 GNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGC 379



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 165/377 (43%), Gaps = 12/377 (3%)

Query: 44  LFNQIQNPQTQAWNSLIR--AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101
           +F  +       W SL+   A AQ  S + A+F+    + A    P+ FTF   L A   
Sbjct: 157 VFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFR---MRAEGIWPNPFTFASVLSAVAS 213

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161
             AL+  Q +H   ++ G    V V  +LM  YA  G++E A+SVF+ M  RD+VSWN++
Sbjct: 214 QGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTL 273

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           ++        LEAL+L+   R     +   T   ++  CA++  L +   LH    + GF
Sbjct: 274 MAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGF 333

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFK 280
             +  V  AL D Y+KCG L  A  +FS     R+V+SW ++I G   +G    A+  F 
Sbjct: 334 HLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFS 393

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M      P+  T+  +L     +  +       H  V + N +        L+  Y + 
Sbjct: 394 RMREDRVMPNEFTYSAML-----KASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSKF 448

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
           G  E AL +       D V W  +L SC        G   + N + ++     ++ + + 
Sbjct: 449 GSTEDALSIFKMIEQKDVVAWSAML-SCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSV 507

Query: 401 IYACTKDEEGVARTRKL 417
           I AC     GV + R+ 
Sbjct: 508 IDACACPSAGVDQGRQF 524


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 197/524 (37%), Positives = 293/524 (55%), Gaps = 16/524 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
            ++LF+QI  P   ++N++I  +  +     A+  +  +L AS  R ++ T    +    
Sbjct: 268 GRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELL-ASGQRVNSSTLVGLIPVYL 326

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               L   + +    ++ G      VST L   Y     ++ AR +FD  PE+ L SWN+
Sbjct: 327 PFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNA 386

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS YTQ      A+ L++ M    +  +  T+  +LS+CA +GAL++G ++H +     
Sbjct: 387 MISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSER 445

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              +VYV  ALVDMYAKCG++  A  +F  M  ++V++WN+MI GYG+HG G EA+  F 
Sbjct: 446 LESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFY 505

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML +G  P  +TFL +L  CSH GLV EG E FH M + Y  +P  +HY C+VD+ GRA
Sbjct: 506 EMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRA 565

Query: 341 GKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+L  ALE I        P +W  LLG+C IH+N E+  +A K L QL+  + G YVLL+
Sbjct: 566 GQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLS 625

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            IY+  ++    A  R+++K   +  TPG + IEI +Q + F   D+SHP A  I+  LE
Sbjct: 626 NIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLE 685

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           ++  + +  GY  +    A+     E+  E     HSEKLAIAFGL +T  GT +RI+KN
Sbjct: 686 KLTGKMREAGYQAETVTTALHDVEDEE-KELMVNVHSEKLAIAFGLISTKPGTEIRIIKN 744

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    R ++VRD  R+HHF++G+CSCGDYW
Sbjct: 745 LRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 173/339 (51%), Gaps = 21/339 (6%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++++ + LFN++  P    +N LIR F+ +  P  +IF Y H+   +  RPD FT+ F +
Sbjct: 61  AVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAI 120

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            A  R++       LH   I  G    + V + ++  Y      E AR VFD MPERD V
Sbjct: 121 SAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTV 180

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHR 214
            WN++IS +++ S+  ++++++  M   DVGL  D  TL  +L++ A +    +G+ +  
Sbjct: 181 LWNTMISGFSRNSYFEDSIRVFVDML--DVGLSFDSTTLATVLTAVAELQEYRLGMGIQC 238

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
           +A + G    VYV   L+ +Y+KCG       +F ++ + D++S+N+MI GY  +   + 
Sbjct: 239 LASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETES 298

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR----YNLKPGI--- 327
           A++ F+++L +G   +S T +         GL+   + + H+ +SR     +LK GI   
Sbjct: 299 AVTLFRELLASGQRVNSSTLV---------GLIPVYLPFNHLQLSRLIQNLSLKIGIILQ 349

Query: 328 -KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                 L  +Y R  +++ A ++ + S       W  ++
Sbjct: 350 PSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMI 388



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 168/368 (45%), Gaps = 10/368 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +    T  WN++I  F+++     +I  +  ML   LS  D+ T    L A  
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSF-DSTTLATVLTAVA 225

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            ++       +     + G    V V T L+  Y+  G     R +FD + + DL+S+N+
Sbjct: 226 ELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNA 285

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS YT       A+ L+  +      ++  TLV L+        L +   +  ++ ++G
Sbjct: 286 MISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIG 345

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            +    V  AL  +Y +   +  A  +F    ++ + SWN+MI GY  +G  D AIS F+
Sbjct: 346 IILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQ 405

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M M    P+ +T   +L  C+  G +  G ++ H ++    L+  +     LVD+Y + 
Sbjct: 406 EM-MPQLSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKC 463

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK---NLVQLEAASAGDYVL 397
           G + +A ++ +     + V W  ++    +H +   G+ A+K    ++Q      G    
Sbjct: 464 GSIVEARQLFDLMVDKNVVTWNAMITGYGLHGH---GKEALKLFYEMLQSGIPPTG-VTF 519

Query: 398 LATIYACT 405
           L+ +YAC+
Sbjct: 520 LSILYACS 527



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 5/218 (2%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           + + +A+ LF++       +WN++I  + Q+    +AI  +  M M  LS P+  T T  
Sbjct: 364 NEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLS-PNPVTVTSI 421

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L AC ++ AL+  + +HG +     E  V VST L+  YA  G I  AR +FD M ++++
Sbjct: 422 LSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG--IFLH 213
           V+WN++I+ Y       EALKL+  M    +   G T + +L +C+H G ++ G  IF H
Sbjct: 482 VTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIF-H 540

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
            +A   GF         +VD+  + G L +A     RM
Sbjct: 541 SMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERM 578


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 201/542 (37%), Positives = 321/542 (59%), Gaps = 22/542 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+  YA   S ++  AQ +F++I      +WN++I  +A++ S  +A+  +  M+  ++ 
Sbjct: 138 LITGYA--SSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNV- 194

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           RPD  T    L AC + +++   +++H ++   G+   + +   L+  Y+  G +E A  
Sbjct: 195 RPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACG 254

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F+ +  +D+VSWN++I  YT  + + EAL L++ M       +  T+V +L +CAH+GA
Sbjct: 255 LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGA 314

Query: 206 LNMGIFLH-RIACEMGFVESV-YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           +++G ++H  I  ++  V +   +  +L+DMYAKCG++++A  VF+ M  + + SWN+MI
Sbjct: 315 IDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 374

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            G+ +HGR +     F +M   G  PD ITF+GLL  CSH G ++ G   F  M   Y++
Sbjct: 375 FGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDI 434

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAM 381
            P ++HYGC++DL G +G  ++A E+I T  P +P  V+W +LL +C+ H N+E+ E   
Sbjct: 435 TPKLEHYGCMIDLLGHSGLFKEAKEMIKT-MPMEPDGVIWCSLLKACRRHGNLELAESFA 493

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           +NL+++E  + G YVLL+ IYA   + + VA+ R L+   G+K  PG S IEI ++VH+F
Sbjct: 494 RNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEF 553

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
           +V DK HP    IY  LEE+    +  G+  D S   V     E++ E +  +HSEKLAI
Sbjct: 554 IVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTS--EVLQEMEEEWKEGALRHHSEKLAI 611

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           AFGL +T  GT L IVKNLR            S  Y R++I RDR R+HHFRDG+CSC D
Sbjct: 612 AFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCND 671

Query: 550 YW 551
           +W
Sbjct: 672 FW 673



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 201/376 (53%), Gaps = 41/376 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
             YA  +F  IQ P    WN+++R +A S  P+ A+  Y  M+   L  P+++TF F LK
Sbjct: 16  FPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGL-LPNSYTFPFLLK 74

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           +C + KA  + Q++HG V++ GYE                               R VV 
Sbjct: 75  SCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVS 134

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L+ GYA++G I +A+ +FD +P +D+VSWN++IS Y +   + EAL+L++ M   +V
Sbjct: 135 YTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNV 194

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T+V +LS+CA   ++ +G  +H    + GF  ++ + NAL+D+Y+KCG +++A  
Sbjct: 195 RPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACG 254

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F  +  +DV+SWN++I GY       EA+  F++ML +G  P+ +T + +L  C+H G 
Sbjct: 255 LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGA 314

Query: 307 VEEGVEYFHMMVSRYNLK-----PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
           ++ G  + H+ + +  LK     P ++    L+D+Y + G +E A +V N+        W
Sbjct: 315 IDIG-RWIHVYIDK-KLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 370

Query: 362 RTLLGSCKIHRNVEIG 377
             ++    +H     G
Sbjct: 371 NAMIFGFAMHGRANAG 386


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 197/524 (37%), Positives = 293/524 (55%), Gaps = 16/524 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
            ++LF+QI  P   ++N++I  +  +     A+  +  +L AS  R ++ T    +    
Sbjct: 268 GRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELL-ASGQRVNSSTLVGLIPVYL 326

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               L   + +    ++ G      VST L   Y     ++ AR +FD  PE+ L SWN+
Sbjct: 327 PFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNA 386

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS YTQ      A+ L++ M    +  +  T+  +LS+CA +GAL++G ++H +     
Sbjct: 387 MISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSER 445

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              +VYV  ALVDMYAKCG++  A  +F  M  ++V++WN+MI GYG+HG G EA+  F 
Sbjct: 446 LESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFY 505

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML +G  P  +TFL +L  CSH GLV EG E FH M + Y  +P  +HY C+VD+ GRA
Sbjct: 506 EMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRA 565

Query: 341 GKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+L  ALE I        P +W  LLG+C IH+N E+  +A K L QL+  + G YVLL+
Sbjct: 566 GQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLS 625

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            IY+  ++    A  R+++K   +  TPG + IEI +Q + F   D+SHP A  I+  LE
Sbjct: 626 NIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLE 685

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           ++  + +  GY  +    A+     E+  E     HSEKLAIAFGL +T  GT +RI+KN
Sbjct: 686 KLTGKMREAGYQAETVTTALHDVEDEE-KELMVNVHSEKLAIAFGLISTKPGTEIRIIKN 744

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    R ++VRD  R+HHF++G+CSCGDYW
Sbjct: 745 LRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 173/339 (51%), Gaps = 21/339 (6%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++++ + LFN++  P    +N LIR F+ +  P  +IF Y H+   +  RPD FT+ F +
Sbjct: 61  AVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAI 120

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            A  R++       LH   I  G    + V + ++  Y      E AR VFD MPERD V
Sbjct: 121 SAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTV 180

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHR 214
            WN++IS +++ S+  ++++++  M   DVGL  D  TL  +L++ A +    +G+ +  
Sbjct: 181 LWNTMISGFSRNSYFEDSIRVFVDML--DVGLSFDSTTLATVLTAVAELQEYRLGMGIQC 238

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
           +A + G    VYV   L+ +Y+KCG       +F ++ + D++S+N+MI GY  +   + 
Sbjct: 239 LASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETES 298

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR----YNLKPGI--- 327
           A++ F+++L +G   +S T +         GL+   + + H+ +SR     +LK GI   
Sbjct: 299 AVTLFRELLASGQRVNSSTLV---------GLIPVYLPFNHLQLSRLIQNLSLKIGIILQ 349

Query: 328 -KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                 L  +Y R  +++ A ++ + S       W  ++
Sbjct: 350 PSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMI 388



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 168/368 (45%), Gaps = 10/368 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +    T  WN++I  F+++     +I  +  ML   LS  D+ T    L A  
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSF-DSTTLATVLTAVA 225

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            ++       +     + G    V V T L+  Y+  G     R +FD + + DL+S+N+
Sbjct: 226 ELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNA 285

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS YT       A+ L+  +      ++  TLV L+        L +   +  ++ ++G
Sbjct: 286 MISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIG 345

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            +    V  AL  +Y +   +  A  +F    ++ + SWN+MI GY  +G  D AIS F+
Sbjct: 346 IILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQ 405

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M M    P+ +T   +L  C+  G +  G ++ H ++    L+  +     LVD+Y + 
Sbjct: 406 EM-MPQLSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKC 463

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK---NLVQLEAASAGDYVL 397
           G + +A ++ +     + V W  ++    +H +   G+ A+K    ++Q      G    
Sbjct: 464 GSIVEARQLFDLMVDKNVVTWNAMITGYGLHGH---GKEALKLFYEMLQSGIPPTG-VTF 519

Query: 398 LATIYACT 405
           L+ +YAC+
Sbjct: 520 LSILYACS 527



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 5/218 (2%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           + + +A+ LF++       +WN++I  + Q+    +AI  +  M M  LS P+  T T  
Sbjct: 364 NEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLS-PNPVTVTSI 421

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L AC ++ AL+  + +HG +     E  V VST L+  YA  G I  AR +FD M ++++
Sbjct: 422 LSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG--IFLH 213
           V+WN++I+ Y       EALKL+  M    +   G T + +L +C+H G ++ G  IF H
Sbjct: 482 VTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIF-H 540

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
            +A   GF         +VD+  + G L +A     RM
Sbjct: 541 SMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERM 578


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 197/512 (38%), Positives = 294/512 (57%), Gaps = 50/512 (9%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL----------------- 130
           D FTF F LK+   + ++   + +HG ++R G +  + V+T+L                 
Sbjct: 133 DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVF 192

Query: 131 --------------MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
                         + GY  +G I+AA ++F+ MP R++VSW ++IS Y+Q+    +AL 
Sbjct: 193 DNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALS 252

Query: 177 LYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L++ M  ED G+  +  T++ +L +CA +  L  G  +H +AC MG   +  V  AL  M
Sbjct: 253 LFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAM 312

Query: 235 YAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           YAKCG+L  A   F ++ +  +++++WN+MI  Y  +G G +A+S F++M+ AG  PD I
Sbjct: 313 YAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDI 372

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-N 351
           TF GLL GCSH GLV+ G++YF+ M + Y++ P ++HY C+ DL GRAG+L +A +++  
Sbjct: 373 TFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGE 432

Query: 352 TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
              P+ P +W +LL +C+ HRN+E+ E A + L  LE  + G+YVLL+ +YA     + V
Sbjct: 433 MPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEV 492

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
            + R ++KS G K +PG SWIEI  + H F+  D SHP    IY  LE +  + K  GY 
Sbjct: 493 DKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYF 552

Query: 472 KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
            D S V    S  E   E +   HSEKLA+AFG+  TP  T LR+ KNLR          
Sbjct: 553 PDTSYVLHDISEEEK--EFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMV 610

Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             S  Y R++IVRD  R+HHF+ G CSCGDYW
Sbjct: 611 FISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 13/212 (6%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA-SLSRPDTFTFT 93
           S  +  A  +F ++      +W ++I  ++QS    QA+  ++ M+   S  RP+  T  
Sbjct: 213 SGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIM 272

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD--NMP 151
             L AC ++  L + +++H    R G      V   L   YA  G +  AR+ FD  N  
Sbjct: 273 SVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRN 332

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI- 210
           E++L++WN++I+ Y      L+A+  +  M    +  D  T   LLS C+H G +++G+ 
Sbjct: 333 EKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLK 392

Query: 211 -FLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
            F H        + + Y  N  V+ YA   +L
Sbjct: 393 YFNH--------MSTTYSINPRVEHYACVADL 416



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 112/258 (43%), Gaps = 43/258 (16%)

Query: 63  FAQSLSPLQAIFYYNHML--MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
           F  S+SPL       ++L  +++   P   ++    +    +  L    ++H  ++  G 
Sbjct: 42  FKCSISPLTISATLQNLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGL 101

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           +   +V + ++  YA++G I+++ SVF+ +                              
Sbjct: 102 QPTALVGSKMVAFYASSGDIDSSVSVFNGIG----------------------------- 132

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
                   D FT   +L S   + ++ MG  +H +   +G    +YV  +L+ +Y KCG 
Sbjct: 133 --------DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGE 184

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           ++ A  VF  M  RDV SWN+++ GY   G  D A++ F++M         +++  ++ G
Sbjct: 185 INDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNI----VSWTTMISG 240

Query: 301 CSHQGLVEEGVEYFHMMV 318
            S  GL ++ +  F  MV
Sbjct: 241 YSQSGLAQQALSLFDEMV 258


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 212/563 (37%), Positives = 324/563 (57%), Gaps = 47/563 (8%)

Query: 29  SYAISVSS--SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ---AIFYYNHMLMAS 83
           S+ I +SS  +L YA  +FN I NP    +N+LI +     +  Q   A   YN +L   
Sbjct: 185 SHLIKISSKFNLPYAFKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNK 244

Query: 84  LSRPDTFTFTFTLKACERVKA-LNKCQELHGFVIR---SGYERCVVVSTNLMRGYAANGV 139
             +P++FTF    KAC   ++  +    LH  V++     ++    V  +L+  YA  G 
Sbjct: 245 NLQPNSFTFPSLFKACCSNQSWFHYGPLLHTHVLKFLQPPFDN--FVQASLLNFYAKYGK 302

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQ-------------ASFHLEALKLYERMRFEDV 186
           +  +R +FD + E DL +WN I++ Y +             A F LE+L L+  M+   +
Sbjct: 303 MCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGI 362

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             +  T+V L+S+C+++GA++ G ++H          + +VG A VDMY+KCG L+ A  
Sbjct: 363 RPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQ 422

Query: 247 VFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
           VF +M +  RD   + +MI G+ VHG G++A+  +++M   G  PDS TF+  +  CSH 
Sbjct: 423 VFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHV 482

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWR 362
           GLVEEG+E F  M   + ++P ++HYGCL+DL GRAG+L++A E +    P  P  VLWR
Sbjct: 483 GLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWL-ADMPMKPNAVLWR 541

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
           +LLG+ +IH N+ +GE+A+  L++LE  ++G+YVLL+ +YA       V R RKL+K +G
Sbjct: 542 SLLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHG 601

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT--KDESLVAVS 480
           +   PG+S +EI   +H+F+  D+SHP +  IY K+ EI  R +  G+     E+L  + 
Sbjct: 602 VNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEALFDLE 661

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
               E  L    +YHSE+LAIAF L  +P   ++RI+KNLR            S+AY R+
Sbjct: 662 EEDKEGVL----SYHSERLAIAFALIASPSSLAIRIIKNLRVCGDCHAFTKLISVAYHRE 717

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +IVRDR R+HHF+DG CSC DYW
Sbjct: 718 IIVRDRNRFHHFKDGSCSCLDYW 740


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 200/545 (36%), Positives = 306/545 (56%), Gaps = 21/545 (3%)

Query: 21  IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           + G  LLN YA     SL  A+ +F ++       W +LI  ++Q   P  A+ ++N ML
Sbjct: 96  VMGNTLLNMYA--KCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQML 153

Query: 81  MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
               S P+ FT +  +KA    +      +LHGF ++ G++  V V + L+  Y   G++
Sbjct: 154 RFGYS-PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLM 212

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
           + A+ VFD +  R+ VSWN++I+ + + S   +AL+L++ M  +      F+   L  +C
Sbjct: 213 DDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGAC 272

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
           +  G L  G ++H    + G     + GN L+DMYAK G++  A  +F R+ KRDV+SWN
Sbjct: 273 SSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWN 332

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           S++  Y  HG G EA+ +F++M   G  P+ I+FL +L  CSH GL++EG  Y+ +M  +
Sbjct: 333 SLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELM-KK 391

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGE 378
             + P   HY  +VDL GRAG L +AL  I    P +P   +W+ LL +C++H+N E+G 
Sbjct: 392 DGIVPEAWHYVTVVDLLGRAGDLNRALRFIE-EMPIEPTAAIWKALLNACRMHKNTELGA 450

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
            A +++ +L+    G +V+L  IYA        AR RK +K +G+K  P  SW+EI N +
Sbjct: 451 YAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAI 510

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           H FV +D+ HP  + I RK EE++ + K +GY  D S V V     E   E +  YHSEK
Sbjct: 511 HMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQER--EVNLQYHSEK 568

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           +A+AF L  TP G+++ I KN+R            S    R++IVRD  R+HHF+DG CS
Sbjct: 569 IALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCS 628

Query: 547 CGDYW 551
           C DYW
Sbjct: 629 CKDYW 633



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 146/288 (50%), Gaps = 9/288 (3%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D   +   LK C   K L + + +H  +++S +   +V+   L+  YA  G +E AR VF
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           + MP+RD V+W ++IS Y+Q     +AL  + +M       + FTL  ++ + A      
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  LH    + GF  +V+VG+AL+D+Y + G +D A  VF  +  R+ +SWN++I G+ 
Sbjct: 179 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 238

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
                ++A+  F+ ML  GF P   ++  L   CS  G +E+G       V  Y +K G 
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-----KWVHAYMIKSGE 293

Query: 328 KHYG----CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           K        L+D+Y ++G +  A ++ +  +  D V W +LL +   H
Sbjct: 294 KLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 341


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 207/567 (36%), Positives = 323/567 (56%), Gaps = 26/567 (4%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           +GLK H+  V   KA   H++  +  L S  +   +    A  +F+ I +    +W ++I
Sbjct: 132 LGLKIHSLLV---KAGYDHDVFVKTSLLSLYVKCDN-FDDALKVFDDIPDKNVVSWTAII 187

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             +  S    +AI  +  +L   L +PD+F+    L AC R+      + +  ++  SG 
Sbjct: 188 TGYISSGHFREAIGAFKKLLEMGL-KPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
            R V V+T+L+  Y   G +E A  +F  MPE+D+VSW+++I  Y       +AL L+ +
Sbjct: 247 GRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M+ E++  D +T+V +LS+CA +GAL++GI+   +     F+ +  +G AL+DMY+KCG+
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           +  A+ +F+ M+++D + WN+M+VG  ++G      S F  +   G  PD  TF+GLLCG
Sbjct: 367 VTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP-- 358
           C+H G V EG ++F+ M   ++L P I+HYGC+VDL GRAG L +A ++IN + P  P  
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLIN-NMPMKPNA 485

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
           V+W  LLG CK+H++  + E  +K L++LE  ++G+YV L+ IY+     E   + R  +
Sbjct: 486 VVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTM 545

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDESL 476
           K   I+     SWIEI   VH+F+V DKSH  ++ IY KL+E+    K +G+  T +  L
Sbjct: 546 KEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVL 605

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
             +     E FL     YHSEKLA+AFGL  +P    +R+VKNLR            S  
Sbjct: 606 FDIEEEEKEHFL----GYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKI 661

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             R++I+RD  R+H F DG CSC DYW
Sbjct: 662 TKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 192/369 (52%), Gaps = 3/369 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S +Y++L+F+Q++ P    WN++IR          AI  Y  M       P+ FT  F L
Sbjct: 63  STNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGF-LPNNFTIPFVL 121

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           KAC R   +    ++H  ++++GY+  V V T+L+  Y      + A  VFD++P++++V
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW +II+ Y  +    EA+  ++++    +  D F+LV +L++CA +G    G ++ R  
Sbjct: 182 SWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYI 241

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + G   +V+V  +L+DMY KCGNL+ A  +FS M ++D++SW++MI GY  +G   +A+
Sbjct: 242 SDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQAL 301

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F QM      PD  T +G+L  C+  G ++ G+ +   ++ R            L+D+
Sbjct: 302 DLFFQMQSENLKPDCYTMVGVLSACATLGALDLGI-WASSLMDRNEFLSNPVLGTALIDM 360

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           Y + G + +A E+       D V+W  ++    ++ + +    ++ +LV+       +  
Sbjct: 361 YSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAK-AVFSLFSLVEKHGIRPDENT 419

Query: 397 LLATIYACT 405
            +  +  CT
Sbjct: 420 FIGLLCGCT 428


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 225/609 (36%), Positives = 315/609 (51%), Gaps = 82/609 (13%)

Query: 21  IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           + G+ LL+  AI++S +L YA  LF+   NP T   N+LIR+ + S +PL ++  +  + 
Sbjct: 36  VFGKLLLHC-AITISDALHYALRLFHHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLR 94

Query: 81  MASLSRPDTFTFTFTLKACERVKALNKCQEL------HGF--------VIRSGYERC--- 123
                 PD+FTF F LKA    + L    +L      HGF         + S Y  C   
Sbjct: 95  RQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDS 154

Query: 124 -------------VVVSTN--------------------------------LMRGYAANG 138
                         VV+ N                                ++ GYA  G
Sbjct: 155 GSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAG 214

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
            +  AR VF  MP RD VSW+++I  +       EA   +  +  E++  +  +L  +LS
Sbjct: 215 ELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLS 274

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVL 257
           +CA  GA   G  LH    + GF+    V NAL+D Y+KCGN+  A  VF  M   R ++
Sbjct: 275 ACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIV 334

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           SW S+I G  +HG G+EAI  F +M  +G  PD ITF+ LL  CSH GLVEEG   F  M
Sbjct: 335 SWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKM 394

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVE 375
            + Y ++P I+HYGC+VDLYGRA +L+KA E I    P  P  ++WRTLLG+C IH N+E
Sbjct: 395 KNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFI-CEMPVSPNAIIWRTLLGACSIHGNIE 453

Query: 376 IGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIG 435
           + E+    L +++  ++GD+VLL+ +YA     + V+  R+ +  + +K TPGWS IEI 
Sbjct: 454 MAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEID 513

Query: 436 NQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF-IGYTKDESLVAVSGSSSEDFLEKSSAY 494
             ++ FV  +K +   +  + KL EIM R +   GY     L +V     E+  E S + 
Sbjct: 514 KVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQ--LRSVLHDIEEEEKEDSVSK 571

Query: 495 HSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRD 542
           HSEKLA AFG+A  P G  LRIVKNLR            S  Y  ++IVRDR R+H F+D
Sbjct: 572 HSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKD 631

Query: 543 GLCSCGDYW 551
           G CSC DYW
Sbjct: 632 GFCSCRDYW 640


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 199/529 (37%), Positives = 307/529 (58%), Gaps = 25/529 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ A  LF+Q+      +W ++I A+++     +A+     ML  ++ RP+ +T++  L+
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNV-RPNVYTYSSVLR 170

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +C     ++  + LH  +I+ G E  V V + L+  +A  G  E A SVFD M   D + 
Sbjct: 171 SC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIV 227

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNSII  + Q S    AL+L++RM+      +  TL  +L +C  +  L +G+  H    
Sbjct: 228 WNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH--VH 285

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            + + + + + NALVDMY KCG+L+ A  VF++M++RDV++W++MI G   +G   EA+ 
Sbjct: 286 IVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALK 345

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++M  +G  P+ IT +G+L  CSH GL+E+G  YF  M   Y + P  +HYGC++DL 
Sbjct: 346 LFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLL 405

Query: 338 GRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           G+AGKL+ A++++N      D V WRTLLG+C++ RN+ + E A K ++ L+   AG Y 
Sbjct: 406 GKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYT 465

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+ IYA ++  + V   R  ++  GIK  PG SWIE+  Q+H F++ D SHP    + +
Sbjct: 466 LLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSK 525

Query: 457 KLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           KL +++HR   IGY  + + V   + G   ED L     +HSEKLA+AFGL T P    +
Sbjct: 526 KLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLR----HHSEKLALAFGLMTLPIEKVI 581

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI KNLR            S    R +++R  +RYHHF+DG CSCGDYW
Sbjct: 582 RIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 147/278 (52%), Gaps = 6/278 (2%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D+ T++  +K C   +A+++   +   +  +G+   + +   L+  Y    ++  A  +F
Sbjct: 60  DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLF 119

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D MP+R+++SW ++IS Y++   H +AL+L   M  ++V  + +T   +L SC  +  + 
Sbjct: 120 DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVR 179

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           M   LH    + G    V+V +AL+D++AK G  + A  VF  M   D + WNS+I G+ 
Sbjct: 180 M---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFA 236

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            + R D A+  FK+M  AGF  +  T   +L  C+   L+E G++  H+ + +Y+    +
Sbjct: 237 QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQA-HVHIVKYDQDLIL 295

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +   LVD+Y + G LE AL V N     D + W T++
Sbjct: 296 NN--ALVDMYCKCGSLEDALRVFNQMKERDVITWSTMI 331



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 4/193 (2%)

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           A+K  + ++   +  D  T   L+  C    A++ G  + R     G    +++ N L++
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY K   L+ A  +F +M +R+V+SW +MI  Y       +A+     ML     P+  T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           +  +L  C+  G+ +  V   H  + +  L+  +     L+D++ + G+ E AL V +  
Sbjct: 165 YSSVLRSCN--GMSD--VRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEM 220

Query: 354 SPSDPVLWRTLLG 366
              D ++W +++G
Sbjct: 221 VTGDAIVWNSIIG 233


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 196/526 (37%), Positives = 306/526 (58%), Gaps = 18/526 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQ LF++I      +WN++I  +A++    +A+  +  M+  ++ RPD  T+   L AC 
Sbjct: 149 AQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNV-RPDESTYVTVLSACA 207

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
              ++   +++H +V   G++  + +   L+  Y+  G +E A  +F  +  +D++SWN+
Sbjct: 208 HSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNT 267

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE-- 218
           +I  YT  + + EAL L++ M       +  T++ +L +CAH+GA+++G ++H    +  
Sbjct: 268 LIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRL 327

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
            G   +  +  +L+DMYAKCG++++A  VF+ M  + + SWN+MI G+ +HGR D +   
Sbjct: 328 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDL 387

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M   G  PD ITF+GLL  CSH G+++ G   F  M   Y + P ++HYGC++DL G
Sbjct: 388 FSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLG 447

Query: 339 RAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
            +G  ++A E+INT     D V+W +LL +CK+H NVE+ E   +NL+++E  +   Y+L
Sbjct: 448 HSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYIL 507

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ IYA     E VAR R L+    +K  PG S IE+ + V +FVV DK HP    IY  
Sbjct: 508 LSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGM 567

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           LEE+    +  G+  D S   V     E++ E +  +HSEKLAIAFGL +T  GT L IV
Sbjct: 568 LEEMEVLLEEAGFVPDTS--EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 625

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S  Y R+++ RDR R+HHFRDG+CSC DYW
Sbjct: 626 KNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 199/369 (53%), Gaps = 39/369 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA  +F  IQ P    WN++IR  A S  P+ ++  Y  M+   L  P+++TF F LK
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGL-LPNSYTFPFLLK 72

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           +C + K   + Q++HG V++ G++                               R VV 
Sbjct: 73  SCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVS 132

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L+ GYA+ G I +A+ +FD +P +D+VSWN++IS Y +   + EAL+L+E M   +V
Sbjct: 133 YTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNV 192

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T V +LS+CAH G++ +G  +H    + GF  ++ + NAL+D+Y+KCG +++A  
Sbjct: 193 RPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACG 252

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F  +  +DV+SWN++I GY       EA+  F++ML +G  P+ +T L +L  C+H G 
Sbjct: 253 LFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGA 312

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYG----CLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           ++ G  + H+ + +  LK G+ +       L+D+Y + G +E A +V N+        W 
Sbjct: 313 IDIG-RWIHVYIDK-RLK-GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWN 369

Query: 363 TLLGSCKIH 371
            ++    +H
Sbjct: 370 AMIFGFAMH 378


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 201/541 (37%), Positives = 314/541 (58%), Gaps = 20/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSP-LQAIFYYNHMLMASL 84
           +L+  A+S   +  YA+ +F+QI NP   A+NS+IR    +  P  + I  +  M+    
Sbjct: 28  ILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGY 87

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
             P+TFT  F LKAC  + AL + +++H  ++RSG+     V ++L+  Y+    I  AR
Sbjct: 88  PNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIAR 147

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VFD + ER+LV W++++S Y +     EAL ++  M+   +  D  +LV +LS+CA VG
Sbjct: 148 KVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVG 207

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL++G ++H    +      + +  AL++MYAKCG ++ A  +F  MR +D  +W+SMIV
Sbjct: 208 ALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIV 267

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           G  +HG  ++A++ F +M  A   P+ +TF+G+L  C+H GLV +G  Y+  M+    ++
Sbjct: 268 GLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSML-ELGIE 326

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
           P ++HYGC+VDL  R G +++A +        DPV+WRTLL +   +R ++  E+    L
Sbjct: 327 PSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVIWRTLLVAYTKNRMLQKAEMVAGKL 386

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           ++LE   A +Y++LA +YA     E V+  RK++K NGIK  PG + IE+   VH FV  
Sbjct: 387 LELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSIEVDGFVHNFVTG 446

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIA 502
           D SHP+A+ I + L ++  +    GY    S+V   V+    E+ L +    HSE+LAIA
Sbjct: 447 DWSHPEAEEIKKTLRDVALKILISGYKPFVSVVLHLVNDEEKENVLYE----HSERLAIA 502

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           +GL  T    ++RIVKNLR            S  Y R++IVRDRVR+H F +G CSC DY
Sbjct: 503 YGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVNGTCSCKDY 562

Query: 551 W 551
           W
Sbjct: 563 W 563


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 206/535 (38%), Positives = 310/535 (57%), Gaps = 17/535 (3%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSP-LQAIFYYNHMLMASLSRPDT 89
           A+S    + YA+ LF+QIQ P   +WNS+IR  +QS +P  + +  +  M+      P+T
Sbjct: 33  ALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNT 92

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           FT  F LKAC  V AL + Q++H  V++SG+     V T L+  YA    I  A  VFD 
Sbjct: 93  FTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDE 152

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           + +R+LV+W+++IS Y +     EAL L+  M+   V  D  T+V ++S+CA  GAL+ G
Sbjct: 153 ITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG 212

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
            ++H    +      + +  ALV+MYAKCG ++ A  VF  M  +D  +W+SMIVG  ++
Sbjct: 213 KWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAIN 272

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G  ++A+  F +M  A   P+ +TF+G+L  C+H GLV EG  Y+  M+  + + P ++ 
Sbjct: 273 GLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMEL 331

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
           YGC+VDL  RA  +E A  ++ T   S +PV+WRTLL  CK  +N++  E+  + L++LE
Sbjct: 332 YGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELE 391

Query: 389 AASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSH 448
             +A +Y+LL+ +YA     E +++ RK +K  GIK  PG S IE+   VH+FV+ D SH
Sbjct: 392 PHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSH 451

Query: 449 PDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
           P+A  +   L +I  R   +G+    S V  +    E   E +   HSE+LAIA+GL  T
Sbjct: 452 PEAMEVREILRDISKRVHAVGHQPGISDVLHNVVDEEK--ENALCEHSERLAIAYGLLKT 509

Query: 509 PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               ++RIVKNLR            S  Y R++IVRDRVR+H F +G CSC D+W
Sbjct: 510 KTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCSCRDFW 564


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 192/524 (36%), Positives = 306/524 (58%), Gaps = 18/524 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++  AQ +F++I      +WN++I  +A+     +A+  +N M+   + +PD  T    L
Sbjct: 159 NMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDV-KPDESTMATVL 217

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
             C     +   +++H ++   G+   + +   L+  Y+  G +E A  +F+ +  +D++
Sbjct: 218 STCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVI 277

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I  Y   + H EAL +++ M       +  T++ +L +CAH+GA+++G ++H   
Sbjct: 278 SWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 337

Query: 217 CEM--GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            +   G + +  +  +L+DMYAKCGN+++A  VF  +  + + S N+MI G+ +HGR D 
Sbjct: 338 DKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADA 397

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A     +M   G  PD ITF+GLL  CSH GL + G + F  M   Y ++P ++HYGC++
Sbjct: 398 AFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMI 457

Query: 335 DLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           DL GR+G  ++A E+IN+ +   D V+W +LL +CKIH+N+E+GE+  + L+++E  + G
Sbjct: 458 DLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPG 517

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            YVLL+ IYA +   + VAR R L+   G+K  PG S IEI + VH+F++ DK HP    
Sbjct: 518 SYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKE 577

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           IY+ LEEI       G+  D S   V     E+  E + +YHSEKLAIAFGL +T  GT 
Sbjct: 578 IYKMLEEIDSLLAETGFVSDTS--EVLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTK 635

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           LRIVKNLR            S  Y R++I RDR R+HHF+DG+C
Sbjct: 636 LRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 188/349 (53%), Gaps = 37/349 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA  +F  IQ P   +WN++IR  A S  P+ A+  Y +M+   LS P+++TF F  K
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLS-PNSYTFPFLFK 86

Query: 98  ACERVKALNKCQELHGFVIRSGY-------------------------------ERCVVV 126
           +C + KA  + +++H  +++ G                                 R VV 
Sbjct: 87  SCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVS 146

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T ++ GYA+ G ++ A+ +FD +P +D+VSWN++IS Y +   + EAL+L+  M   DV
Sbjct: 147 YTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDV 206

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T+  +LS+C H G + +G  +H      GF  ++ + NAL+D+Y+KCG ++ A  
Sbjct: 207 KPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHG 266

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F  ++ +DV+SWN++I GY       EA+  F++ML  G  P+ +T L +L  C+H G 
Sbjct: 267 LFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGA 326

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYG---CLVDLYGRAGKLEKALEVINT 352
           ++ G  + H+ + +  LK  I +      L+D+Y + G +E A +V +T
Sbjct: 327 IDIG-RWIHVYIDK-KLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDT 373



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           L  A  VF  +++ + LSWN+MI G+ +      A++ +  M+  G  P+S TF  L   
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           C+     +EG +  H  + +Y L   +  +  L+ +Y + G +E A +V +TSS  D V 
Sbjct: 88  CAKSKAAQEGKQ-IHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVS 146

Query: 361 WRTLLGSCKIHRNVE-----IGEIAMKNLVQLEAASAG 393
           +  ++       N++       EI +K++V   A  +G
Sbjct: 147 YTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISG 184


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 198/534 (37%), Positives = 311/534 (58%), Gaps = 29/534 (5%)

Query: 38  LSYAQLLFNQIQNPQTQ--AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           L  A+ +F  +  P+    +W +++ A+AQ+  P++A+  ++ M    + +PD       
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDV-KPDWVALVSV 228

Query: 96  LKACERVKALNKCQELHGFVIRSGYE--RCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
           L A   ++ L + + +H  V++ G E    +++S N M  YA  G +  A+ +FD M   
Sbjct: 229 LNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM--YAKCGQVATAKILFDKMKSP 286

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           +L+ WN++IS Y +  +  EA+ ++  M  +DV  D  ++   +S+CA VG+L     ++
Sbjct: 287 NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY 346

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
                  + + V++ +AL+DM+AKCG+++ A  VF R   RDV+ W++MIVGYG+HGR  
Sbjct: 347 EYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAR 406

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           EAIS ++ M   G HP+ +TFLGLL  C+H G+V EG  +F+ M   + + P  +HY C+
Sbjct: 407 EAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACV 465

Query: 334 VDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           +DL GRAG L++A EVI    P  P   +W  LL +CK HR+VE+GE A + L  ++ ++
Sbjct: 466 IDLLGRAGHLDQAYEVIKC-MPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN 524

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
            G YV L+ +YA  +  + VA  R  +K  G+    G SW+E+  ++  F V DKSHP  
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRY 584

Query: 452 DMIYRKLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
           + I R++E I  R K  G+   KD SL  ++   +E+ L      HSE++AIA+GL +TP
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL----CSHSERIAIAYGLISTP 640

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            GT LRI KNLR            S    R+++VRD  R+HHF+DG+CSCGDYW
Sbjct: 641 QGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 194/378 (51%), Gaps = 5/378 (1%)

Query: 30  YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
           +A S    +++A+ +F+ +  PQ   WN++IR ++++     A+  Y++M +A +S PD+
Sbjct: 61  HASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS-PDS 119

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           FTF   LKAC  +  L   + +H  V R G++  V V   L+  YA    + +AR+VF+ 
Sbjct: 120 FTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEG 179

Query: 150 --MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
             +PER +VSW +I+S Y Q    +EAL+++ +MR  DV  D   LV +L++   +  L 
Sbjct: 180 LPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLK 239

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  +H    +MG      +  +L  MYAKCG + +A  +F +M+  +++ WN+MI GY 
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +G   EAI  F +M+     PD+I+    +  C+  G +E+    +   V R + +  +
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYE-YVGRSDYRDDV 358

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
                L+D++ + G +E A  V + +   D V+W  ++    +H       I++   ++ 
Sbjct: 359 FISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREA-ISLYRAMER 417

Query: 388 EAASAGDYVLLATIYACT 405
                 D   L  + AC 
Sbjct: 418 GGVHPNDVTFLGLLMACN 435



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 128/261 (49%), Gaps = 3/261 (1%)

Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
           + +++H  ++  G +    + T L+   ++ G I  AR VFD++P   +  WN+II  Y+
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
           + +   +AL +Y  M+   V  D FT   LL +C+ +  L MG F+H     +GF   V+
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 227 VGNALVDMYAKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           V N L+ +YAKC  L SA  VF    + +R ++SW +++  Y  +G   EA+  F QM  
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
               PD +  + +L   +    +++G    H  V +  L+        L  +Y + G++ 
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQG-RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVA 274

Query: 345 KALEVINTSSPSDPVLWRTLL 365
            A  + +     + +LW  ++
Sbjct: 275 TAKILFDKMKSPNLILWNAMI 295


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 196/515 (38%), Positives = 305/515 (59%), Gaps = 25/515 (4%)

Query: 56  WNSLIRAFAQSL-SPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +N+LIRA++Q+  S   +  +Y  ML   ++ P+ FTF F LK C  + +L   + +HG 
Sbjct: 92  FNTLIRAYSQTRDSKSNSFLFYRTMLRYGVT-PNKFTFPFVLKGCAGIGSLRLGKCVHGC 150

Query: 115 VIRSGYERCVVVSTNLMRGYAANGV--IEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
           V++ G+E  V V   L+  Y   G    E A  VFD+ P+ D V+W+++I+ + +     
Sbjct: 151 VVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSS 210

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
            A+ L+  M+   V  D  T+V +LS+CA +GAL +G ++     +    +SV + NAL+
Sbjct: 211 RAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALI 270

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           DM+AKCGN+D A  +F +M  R ++SW S+I G  +HGRG +A+S F +M+  G  PD +
Sbjct: 271 DMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDV 330

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
            F+G+L  CSH GLV++G  YF  M   +++ P ++HYGC+VDL  R G +++A E +  
Sbjct: 331 AFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQ- 389

Query: 353 SSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410
             P +P  ++WRT++ +C     +++GE   K L++ E     +YVLL+ IYA  +  E 
Sbjct: 390 KMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEK 449

Query: 411 VARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY 470
             + R+++   G+K  PG + IE+ N++++FV  DKSH     IY  ++E+    K  GY
Sbjct: 450 KTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGY 509

Query: 471 --TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------- 521
             T  + L+ +     ED L +    HSEKLAIAF L  TP GTS+RIVKNLR       
Sbjct: 510 VPTTSQVLLDIDEEDKEDALYR----HSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHS 565

Query: 522 -----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                S  Y+R+++VRDR R+HHF++GLCSC D+W
Sbjct: 566 ATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 129/279 (46%), Gaps = 12/279 (4%)

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRG--------YAANGVIEAARSVFDNMPERDL 155
            L+K  ++H F++++G +   ++ T             YA + +   + +     P  D 
Sbjct: 30  TLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYDA 89

Query: 156 VSWNSIISCYTQA-SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
             +N++I  Y+Q       +   Y  M    V  + FT   +L  CA +G+L +G  +H 
Sbjct: 90  FLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHG 149

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFC--VFSRMRKRDVLSWNSMIVGYGVHGRG 272
              + GF E V+V N L+ MY   G     F   VF    K D ++W++MI G+   G  
Sbjct: 150 CVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCS 209

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
             A+  F++M + G  PD IT + +L  C+  G +E G ++    V + N+   ++    
Sbjct: 210 SRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELG-KWVESYVEKKNIPKSVELCNA 268

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           L+D++ + G ++KA+++         V W +++    +H
Sbjct: 269 LIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMH 307


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 202/555 (36%), Positives = 315/555 (56%), Gaps = 23/555 (4%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ 71
           +  ++Q   +    LL S   +   SLSYA+ +F++I +P T A+N++IR+ ++   P  
Sbjct: 12  IKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSRFF-PSH 70

Query: 72  AIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131
           ++FY+  M    +   D FTF F LKAC R++ +N    LH  +++ G +  + V   L+
Sbjct: 71  SLFYFFSMRSNGIPL-DNFTFPFVLKACSRLQ-IN--LHLHSLIVKYGLDSDIFVQNALI 126

Query: 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDG 190
             Y   G +E A  VFD M ERD VSW+++I+ +    +  EAL L+E+M+ ED V  D 
Sbjct: 127 CVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDE 186

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
            T++ ++S+ +H+G L +G ++      +G   SV +G AL+DM+++CG++D +  VF +
Sbjct: 187 VTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEK 246

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           M  R+VL+W ++I G GVHGR  EA++ F  M  +G  PD +TF G+L  CSH GLV+EG
Sbjct: 247 MAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEG 306

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSC 368
            + F  +   Y + P + HYGC+VD+ GRAG L +A + +    P  P  ++WRTLLG+C
Sbjct: 307 WDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVE-RMPMKPNSIIWRTLLGAC 365

Query: 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPG 428
             H N+ + E     + ++ ++  GD VLL+ +Y         A  R  ++   I   PG
Sbjct: 366 VNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPG 425

Query: 429 WSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFL 488
            S I +   +H+FV  D SHP ++ I + L  I+   +  GY        V     E+  
Sbjct: 426 CSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTK--NVLHDIEEEER 483

Query: 489 EKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVR 536
           E S +YHSEKLA+AF + +  D  ++RI+KNLR            S+ + R +I+RDR R
Sbjct: 484 EHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNR 543

Query: 537 YHHFRDGLCSCGDYW 551
           +HHF  GLCSC DYW
Sbjct: 544 FHHFEKGLCSCHDYW 558


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 194/528 (36%), Positives = 308/528 (58%), Gaps = 21/528 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ I      +WN++I  + ++    +A+  +  M+  ++ RPD  T    L AC 
Sbjct: 168 ARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNV-RPDEGTLVSVLSACA 226

Query: 101 RVKALNKCQELHGFVI-RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
           +  ++   +E+H  V    G+   + +    +  Y+  G +E A  +F+ +  +D+VSWN
Sbjct: 227 QSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWN 286

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE- 218
           ++I  YT  + + EAL L++ M       +  T++ +L +CAH+GA+++G ++H    + 
Sbjct: 287 TLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKR 346

Query: 219 -MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             G      +  +L+DMYAKCG++++A  VF+ M  + + SWN+MI G+ +HGR + A  
Sbjct: 347 LKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFD 406

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M   G  PD IT +GLL  CSH GL++ G   F  +   YN+ P ++HYGC++DL 
Sbjct: 407 LFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLL 466

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           G AG  ++A E+I+   P +P  V+W +LL +CK+H N+E+ E   + L+++E  ++G Y
Sbjct: 467 GHAGLFKEAEEIIHM-MPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSY 525

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ IYA     E VAR R+++   G+K  PG S IEI + VH+F++ DK HP +  IY
Sbjct: 526 VLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIY 585

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           R LEE+    +  G+  D S   V     E++ E +  +HSEKLAIAFGL +T  GT L 
Sbjct: 586 RMLEEMDVLLEEAGFVPDTS--EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLT 643

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +VKNLR            S  Y R+++ RDR R+HHFRDG+CSC DYW
Sbjct: 644 VVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 188/368 (51%), Gaps = 36/368 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA  +F   Q P    WN+++R  A S   +  +  Y  M+      P+ +TF F LK
Sbjct: 33  LPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXG-HVPNAYTFPFLLK 91

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           +C + K   + +++H  V++ G E                               R VV 
Sbjct: 92  SCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVS 151

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L+ GYA+ G + +AR VFD + ERD+VSWN++I+ Y +   + EAL+L++ M   +V
Sbjct: 152 CTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNV 211

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACE-MGFVESVYVGNALVDMYAKCGNLDSAF 245
             D  TLV +LS+CA  G++ +G  +H +  +  GF  S+ + NA + +Y+KCG+++ A 
Sbjct: 212 RPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIAS 271

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            +F  +  +DV+SWN++I GY       EA+  F++ML +G  P+ +T L +L  C+H G
Sbjct: 272 GLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLG 331

Query: 306 LVEEGVEYFHMMVSR--YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
            ++ G  + H+ + +    +  G      L+D+Y + G +E A +V N+        W  
Sbjct: 332 AIDIG-RWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNA 390

Query: 364 LLGSCKIH 371
           ++    +H
Sbjct: 391 MIFGFAMH 398



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 32/293 (10%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A SVF+   E +L+ WN+++     +S  +  L++Y RM       + +T   LL SCA 
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD-------------------- 242
                 G  +H    ++G     Y   +L+ MYA+ G L+                    
Sbjct: 96  SKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTAL 155

Query: 243 -----------SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
                      SA  VF  + +RDV+SWN+MI GY  +   +EA+  FK+M+     PD 
Sbjct: 156 ITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDE 215

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
            T + +L  C+  G +E G E   ++   +     +K     + LY + G +E A  +  
Sbjct: 216 GTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFE 275

Query: 352 TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
             S  D V W TL+G    H N+    + +   +     S  D  +L+ + AC
Sbjct: 276 GLSCKDVVSWNTLIGG-YTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPAC 327


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 195/529 (36%), Positives = 309/529 (58%), Gaps = 18/529 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A+ +F++++     +W  +IR +A++ S ++  F     +     +PD  T+   +
Sbjct: 313 SIEGARRVFDKMKVRDVVSWTVMIRGYAEN-SNIEDAFGLFATMQEEGIQPDRITYIHII 371

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC     L+  +E+H  V+R+G+   ++V T L+  YA  G I+ AR VFD M  RD+V
Sbjct: 372 NACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVV 431

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW+++I  Y +     EA + +  M+  +V  D  T + LL++C H+GAL++G+ ++  A
Sbjct: 432 SWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQA 491

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            +   V  + VGNAL++M  K G+++ A  +F  M +RDV++WN MI GY +HG   EA+
Sbjct: 492 IKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREAL 551

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F +ML   F P+S+TF+G+L  CS  G VEEG  +F  ++    + P ++ YGC+VDL
Sbjct: 552 DLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDL 611

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG+L++A  +IN   P  P   +W TLL +C+I+ N+++ E A +  +  E      
Sbjct: 612 LGRAGELDEAELLIN-RMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAV 670

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YV L+ +YA     E VA+ RK+++S G++   G +WIE+  ++H FVV+D+SHP A  I
Sbjct: 671 YVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEI 730

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y +L  +M   K  GY      V  +    E   E++ +YHSEKLAIA+G+ + P G  +
Sbjct: 731 YAELARLMTAIKREGYIPVTQNVLHNVGEQEK--EEAISYHSEKLAIAYGVLSLPSGAPI 788

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI KNLR            S    R++I RD  R+HHF++G+CSCGDYW
Sbjct: 789 RIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 173/367 (47%), Gaps = 9/367 (2%)

Query: 8   RYVGLNKARQAHEIHGEWLLNSYAI-------SVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           R  GL K  + H I     LN Y +       S+  ++  A+  F+ ++N     WN++I
Sbjct: 75  RDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAII 134

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             +AQ     +A   +  M+  ++  P   TF   L AC     L   +E H  VI+ G+
Sbjct: 135 AGYAQLGHVKEAFALFRQMVDEAME-PSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGF 193

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
                + T L+  Y   G ++ AR VFD + +RD+ ++N +I  Y ++    +A +L+ R
Sbjct: 194 VSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYR 253

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M+ E    +  + + +L  C+   AL  G  +H      G V+ V V  AL+ MY  CG+
Sbjct: 254 MQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGS 313

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           ++ A  VF +M+ RDV+SW  MI GY  +   ++A   F  M   G  PD IT++ ++  
Sbjct: 314 IEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINA 373

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           C+    +    E  H  V R      +     LV +Y + G ++ A +V +  S  D V 
Sbjct: 374 CASSADLSLARE-IHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVS 432

Query: 361 WRTLLGS 367
           W  ++G+
Sbjct: 433 WSAMIGA 439



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 166/337 (49%), Gaps = 2/337 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A+ +F+ +       +N +I  +A+S    +A   +  M      +P+  +F   L
Sbjct: 212 SMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGF-KPNRISFLSIL 270

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
             C   +AL   + +H   + +G    V V+T L+R Y   G IE AR VFD M  RD+V
Sbjct: 271 DGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVV 330

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW  +I  Y + S   +A  L+  M+ E +  D  T + ++++CA    L++   +H   
Sbjct: 331 SWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQV 390

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              GF   + V  ALV MYAKCG +  A  VF  M +RDV+SW++MI  Y  +G G+EA 
Sbjct: 391 VRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAF 450

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F  M      PD +T++ LL  C H G ++ G+E +   + + +L   I     L+++
Sbjct: 451 ETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAI-KADLVSHIPVGNALINM 509

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRN 373
             + G +E+A  +       D V W  ++G   +H N
Sbjct: 510 NVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGN 546



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 144/298 (48%), Gaps = 1/298 (0%)

Query: 78  HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
           H L    +  D+ T+    + C  ++     +++   +I+SG +  +     L++ ++  
Sbjct: 50  HRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSIC 109

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G +  AR  FD++  + +V+WN+II+ Y Q     EA  L+ +M  E +     T + +L
Sbjct: 110 GNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVL 169

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
            +C+    L +G   H    ++GFV    +G ALV MY K G++D A  VF  + KRDV 
Sbjct: 170 DACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVS 229

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           ++N MI GY   G G++A   F +M   GF P+ I+FL +L GCS    +  G +  H  
Sbjct: 230 TFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWG-KAVHAQ 288

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
                L   ++    L+ +Y   G +E A  V +     D V W  ++     + N+E
Sbjct: 289 CMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIE 346


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 209/554 (37%), Positives = 305/554 (55%), Gaps = 50/554 (9%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER-V 102
           L ++ +      WN+LI    +     +A   +  M  A  + P   T+   L AC +  
Sbjct: 100 LLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAA-PTPVTYVSVLSACGKGT 158

Query: 103 KALNKCQELHGFVIRSG--------------YERC-----------------VVVSTNLM 131
             +    ++HG V+ SG              Y  C                 VV  T+L+
Sbjct: 159 GDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLL 218

Query: 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191
            G    G ++ AR +F  MPERD VSW ++I  Y QA+   EAL+++  M+  +V  D F
Sbjct: 219 SGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEF 278

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           T+V ++++CA +GAL MG ++       G     +VGNAL+DMY+KCG+++ A  VF  M
Sbjct: 279 TMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDM 338

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
             RD  +W ++I+G  V+G G+EAI  F +M+     PD +TF+G+L  C+H GLV++G 
Sbjct: 339 HHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGR 398

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCK 369
           E+F  M   YN+ P + HYGC++DL+GRAGK+ +AL+ I+   P  P   +W TLL +C+
Sbjct: 399 EFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAID-QMPMTPNSTIWGTLLAACR 457

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           +H N EIGE+  + L+Q++  ++  Y LL+ IYA     E V R R  I   GIK  PG 
Sbjct: 458 VHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGC 517

Query: 430 SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
           S IE+   +H+FV  D+SHP +  IY KLE I++    +GY  D + V V  +  E   +
Sbjct: 518 SLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEK--Q 575

Query: 490 KSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRY 537
           K   +HSEKLAIAF L ++   T +RIVKNLR            S  Y R+++VRDR R+
Sbjct: 576 KVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRF 635

Query: 538 HHFRDGLCSCGDYW 551
           HHFR G CSC DYW
Sbjct: 636 HHFRHGFCSCKDYW 649



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 148/327 (45%), Gaps = 34/327 (10%)

Query: 71  QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130
            A+  Y  ML A  + PD +TF   LKA  R  +    + +H  V++ G  R   V+T+L
Sbjct: 26  DAVAGYARML-ARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSL 84

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190
           +  YAA G   AAR++         V WN++IS + +     EA   +  M         
Sbjct: 85  VTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTP 144

Query: 191 FTLVCLLSSCAH-VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
            T V +LS+C    G + +G+ +H      G +  + V NALVDMYA+C +++SA+ +F 
Sbjct: 145 VTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFD 204

Query: 250 -------------------------------RMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
                                          RM +RD +SW +MI GY    R  EA+  
Sbjct: 205 GMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEM 264

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F++M  +    D  T + ++  C+  G +E G E+  + +SR  +K        L+D+Y 
Sbjct: 265 FREMQCSNVSADEFTMVSVITACAQLGALEMG-EWVRVYMSRQGIKMDAFVGNALIDMYS 323

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL 365
           + G +E+AL+V       D   W  ++
Sbjct: 324 KCGSIERALDVFKDMHHRDKFTWTAII 350



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 117/260 (45%), Gaps = 5/260 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF ++    T +W ++I  + Q+    +A+  +  M  +++S  D FT    + AC 
Sbjct: 230 ARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVS-ADEFTMVSVITACA 288

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++ AL   + +  ++ R G +    V   L+  Y+  G IE A  VF +M  RD  +W +
Sbjct: 289 QLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTA 348

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEM 219
           II       +  EA++++ RM       D  T + +L++C H G ++ G  F   +    
Sbjct: 349 IILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETY 408

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISF 278
               +V     ++D++ + G +  A     +M    +   W +++    VHG  +     
Sbjct: 409 NIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELV 468

Query: 279 FKQMLMAGFHPDSITFLGLL 298
            +++L     P++ T   LL
Sbjct: 469 TERLLQ--MDPENSTVYTLL 486



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 14/224 (6%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR + + +P R LV+               +A+  Y RM       D +T   LL + A 
Sbjct: 8   ARRLLEGIPRRCLVAARE------------DAVAGYARMLARGAMPDAYTFPPLLKAVAR 55

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
             +      +H    + G   + +V  +LV  YA  G+  +A  + S   +   + WN++
Sbjct: 56  GSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNAL 115

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH-QGLVEEGVEYFHMMVSRY 321
           I G+    R  EA   F  M  AG  P  +T++ +L  C    G V  G++  H  V   
Sbjct: 116 ISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQ-VHGRVVGS 174

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            + P ++    LVD+Y     +E A ++ +       V W +LL
Sbjct: 175 GVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLL 218


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 199/555 (35%), Positives = 311/555 (56%), Gaps = 47/555 (8%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+++ +     WN +I  ++Q+      +  Y  M   S + PD       L AC 
Sbjct: 170 ARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEM-KTSGTEPDAIILCTVLSACA 228

Query: 101 RVKALNKCQELHGFVIRSG--------------YERC-----------------VVVSTN 129
               L+  + +H F+  +G              Y  C                 +VVST 
Sbjct: 229 HAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTA 288

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           ++ GYA  G+++ AR +FD M E+DLV W+++IS Y ++   LEAL+L+  M+   +  D
Sbjct: 289 MLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPD 348

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
             T++ ++S+CA+VGAL    ++H  A + GF  ++ + NAL+DMYAKCGNL  A  VF 
Sbjct: 349 QITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFE 408

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            M +++V+SW+SMI  + +HG  D AI+ F +M      P+ +TF+G+L  CSH GLVEE
Sbjct: 409 NMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEE 468

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSC 368
           G ++F  M++ + + P  +HYGC+VDLY RA  L KA+E+I T   P + ++W +L+ +C
Sbjct: 469 GQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSAC 528

Query: 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPG 428
           + H  +E+GE A   L++LE    G  V+L+ IYA  K  + V   RKL+K  G+     
Sbjct: 529 QNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKA 588

Query: 429 WSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFL 488
            S IE+ N+VH F++ D+ H  +D IY+KL+ ++ + K +GYT   S + V     E   
Sbjct: 589 CSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEE--K 646

Query: 489 EKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVR 536
           ++   +HSEKLA+ +GL      + +RIVKNLR            S  +  ++++RDR R
Sbjct: 647 KEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTR 706

Query: 537 YHHFRDGLCSCGDYW 551
           +HHF  G+CSC DYW
Sbjct: 707 FHHFNGGICSCRDYW 721



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 192/403 (47%), Gaps = 37/403 (9%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           S+L YA  LF+ I NP T+  N L+R F++  +P   +  Y H+        D F+F   
Sbjct: 63  SALDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPL-DRFSFPPL 121

Query: 96  LKACERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           LKA  ++ ALN   E+HG   + G+      + + L+  YAA G I  AR +FD M  RD
Sbjct: 122 LKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRD 181

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +V+WN +I  Y+Q + +   LKLYE M+      D   L  +LS+CAH G L+ G  +H+
Sbjct: 182 VVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQ 241

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNL--------------------------------D 242
              + GF    ++  +LV+MYA CG +                                D
Sbjct: 242 FIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQD 301

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
           + F +F RM ++D++ W++MI GY    +  EA+  F +M      PD IT L ++  C+
Sbjct: 302 ARF-IFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACA 360

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           + G + +  ++ H    +      +     L+D+Y + G L KA EV       + + W 
Sbjct: 361 NVGALVQA-KWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWS 419

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           +++ +  +H + +   IA+ + ++ +         +  +YAC+
Sbjct: 420 SMINAFAMHGDAD-SAIALFHRMKEQNIEPNGVTFIGVLYACS 461



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 121/253 (47%), Gaps = 7/253 (2%)

Query: 103 KALNKCQELHGFVIRSGYERC-----VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           K L   +++H  ++RS  +        +V         +   ++ A S+F ++P      
Sbjct: 23  KTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPNPPTRF 82

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
            N ++  +++       L LY  +R     LD F+   LL + + + ALN+G+ +H +A 
Sbjct: 83  SNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLAS 142

Query: 218 EMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
           + GF  +  ++ +AL+ MYA CG +  A  +F +M  RDV++WN MI GY  +   D  +
Sbjct: 143 KFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVL 202

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             +++M  +G  PD+I    +L  C+H G +  G +  H  +     + G      LV++
Sbjct: 203 KLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYG-KAIHQFIKDNGFRVGSHIQTSLVNM 261

Query: 337 YGRAGKLEKALEV 349
           Y   G +  A EV
Sbjct: 262 YANCGAMHLAREV 274


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 204/541 (37%), Positives = 302/541 (55%), Gaps = 20/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S    L  AQ +F+ ++     +WNS+I A+ Q+  P+ A+ ++  ML   + 
Sbjct: 289 LINMY--SKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGM- 345

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAAR 144
           RPD  T         ++      + +HGFV+R  + E  +V+   L+  YA  G I+ AR
Sbjct: 346 RPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCAR 405

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF-EDVGLDGFTLVCLLSSCAHV 203
           +VF+ +P RD++SWN++I+ Y Q     EA+  Y  M     +  +  T V +L + +HV
Sbjct: 406 AVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHV 465

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           GAL  G+ +H    +      V+V   L+DMY KCG L+ A  +F  + +   + WN++I
Sbjct: 466 GALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAII 525

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
              G+HG G++A+  FK M   G   D ITF+ LL  CSH GLV+E    F  M   Y +
Sbjct: 526 SSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRI 585

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           KP +KHYGC+VDL+GRAG LEKA  ++ N    +D  +W TLL +C+IH N E+G  A  
Sbjct: 586 KPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASD 645

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            L+++++ + G YVLL+ IYA     EG  + R L +  G++ TPGWS + +G+ V  F 
Sbjct: 646 RLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFY 705

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             ++SHP    IY +L  +  + K +GY  D S V       ED  E+    HSE+LAI 
Sbjct: 706 AGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVL--QDVEEDEKEEILTSHSERLAIV 763

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FG+ +TP  + +RI KNLR            S    R++IVRD  R+HHF+DG+CSCGDY
Sbjct: 764 FGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDY 823

Query: 551 W 551
           W
Sbjct: 824 W 824



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 167/328 (50%), Gaps = 3/328 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           LS +   F  IQ     +WNS++ A+ +      ++     +L  S  RPD +TF   LK
Sbjct: 99  LSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLK 158

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC    +L   +++H +V++ G+E  V V+ +L+  Y+  G +E A  VF +MP RD+ S
Sbjct: 159 AC---LSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGS 215

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++IS + Q     EAL++ +RM+ E+V +D  T+  +L  CA    +  G+ +H    
Sbjct: 216 WNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVI 275

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G    V+V NAL++MY+K G L  A  VF  M  RD++SWNS+I  Y  +     A+ 
Sbjct: 276 KHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALG 335

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
           FFK+ML  G  PD +T + L            G      +V    L+  I     LV++Y
Sbjct: 336 FFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMY 395

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLL 365
            + G ++ A  V       D + W TL+
Sbjct: 396 AKLGSIDCARAVFEQLPSRDVISWNTLI 423



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 139/277 (50%), Gaps = 8/277 (2%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           F    ++C  +   N  ++LH  ++  G  + VV+ T L+  YA  G +  + + F ++ 
Sbjct: 54  FNLVFRSCTNI---NVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 152 ERDLVSWNSIISCYTQASFHLEALK-LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
            +++ SWNS++S Y +   + +++  + E +    V  D +T   +L +C    +L  G 
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACL---SLADGE 167

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H    +MGF   VYV  +L+ +Y++ G ++ A  VF  M  RDV SWN+MI G+  +G
Sbjct: 168 KMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNG 227

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
              EA+    +M       D++T   +L  C+    V  GV   H+ V ++ L+  +   
Sbjct: 228 NVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGV-LVHLYVIKHGLESDVFVS 286

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
             L+++Y + G+L+ A  V +     D V W +++ +
Sbjct: 287 NALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAA 323



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 11/181 (6%)

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
           F LV    SC ++   N+   LH +   +G  + V +   LV +YA  G+L  +   F  
Sbjct: 54  FNLV--FRSCTNI---NVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKH 108

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEE 309
           ++++++ SWNSM+  Y   GR  +++    ++L ++G  PD  TF  +L  C    L   
Sbjct: 109 IQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKAC----LSLA 164

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSC 368
             E  H  V +   +  +     L+ LY R G +E A +V       D   W  ++ G C
Sbjct: 165 DGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFC 224

Query: 369 K 369
           +
Sbjct: 225 Q 225


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 199/541 (36%), Positives = 306/541 (56%), Gaps = 21/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA     +L  A+  F Q+      +WNS+I A+ Q+  P+ A  ++  M +    
Sbjct: 357 LINMYA--KFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGF- 413

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAAR 144
           +PD  T         + +     + +HGF++R G+    VV+   ++  YA  G++++A 
Sbjct: 414 QPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAH 473

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHV 203
            VF+ +P +D++SWN++I+ Y Q     EA+++Y+ M   +++  +  T V +L + AHV
Sbjct: 474 KVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHV 533

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           GAL  G+ +H    +      V+V   L+D+Y KCG L  A  +F ++ +   ++WN++I
Sbjct: 534 GALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAII 593

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
             +G+HG  ++ +  F +ML  G  PD +TF+ LL  CSH G VEEG   F +M   Y +
Sbjct: 594 SCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGI 652

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           KP +KHYGC+VDL GRAG LE A + I +     D  +W  LLG+C+IH N+E+G+ A  
Sbjct: 653 KPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASD 712

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            L ++++ + G YVLL+ IYA     EGV + R L +  G+K TPGWS IE+  +V  F 
Sbjct: 713 RLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFY 772

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             ++SHP    IY +L  +  + K +GY  D S V       ED  E     HSE+LAIA
Sbjct: 773 TGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVL--QDVEEDEKEHILTSHSERLAIA 830

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FG+ +TP  + +RI KNLR            S    R+++VRD  R+HHF+DG+CSCGDY
Sbjct: 831 FGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDY 890

Query: 551 W 551
           W
Sbjct: 891 W 891



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 175/340 (51%), Gaps = 5/340 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA     SLS  +  F+QI      AWNS+I A+  +    +AI  +  +L+ S  
Sbjct: 157 LVNLYANLGDVSLS--RCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEI 214

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           RPD +TF   LKAC     L   +++H +  + G++  V V+ +L+  Y+  G    ARS
Sbjct: 215 RPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARS 271

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD+MP RD+ SWN++IS   Q     +AL + + MR E + ++  T+V +L  C  +G 
Sbjct: 272 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGD 331

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           ++  + +H    + G    ++V NAL++MYAK GNL+ A   F +M   DV+SWNS+I  
Sbjct: 332 ISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAA 391

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y  +     A  FF +M + GF PD +T + L    +     +        ++ R  L  
Sbjct: 392 YEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLME 451

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +     +VD+Y + G L+ A +V       D + W TL+
Sbjct: 452 DVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLI 491



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 138/277 (49%), Gaps = 8/277 (2%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           F F   +  +     KC  LH  ++ +G  + + +ST L+  YA  G +  +R  FD +P
Sbjct: 122 FNFLFDSSTKT-PFAKC--LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIP 178

Query: 152 ERDLVSWNSIISCYTQASFHLEALK-LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           ++D+ +WNS+IS Y       EA+   Y+ +   ++  D +T   +L +C   G L  G 
Sbjct: 179 QKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGR 235

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H  A ++GF  +V+V  +L+ MY++ G    A  +F  M  RD+ SWN+MI G   +G
Sbjct: 236 KIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG 295

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
              +A+    +M + G   + +T + +L  C   G +   +   H+ V ++ L+  +   
Sbjct: 296 NAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM-LIHLYVIKHGLEFDLFVS 354

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
             L+++Y + G LE A +       +D V W +++ +
Sbjct: 355 NALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAA 391


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 314/541 (58%), Gaps = 18/541 (3%)

Query: 26  LLNSYA-ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMAS 83
           L+N YA  SV  S+  A+ +F+QI +    +W ++I  + Q      +A+  +  M++  
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTH 371

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
           +  P+ FTF+ TLKAC  + AL   +++    ++ G+     V+ +L+  YA +G I+ A
Sbjct: 372 VI-PNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDA 430

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           R  FD + E++L+S+N++I  Y +     EAL+L+  +  + +G   FT   LLS  A +
Sbjct: 431 RKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASI 490

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           G +  G  +H    + G   +  V NAL+ MY++CGN++SAF VF  M  R+V+SW S+I
Sbjct: 491 GTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSII 550

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            G+  HG   +A+  F +ML  G  P+ +T++ +L  CSH GLV EG ++F  M + + +
Sbjct: 551 TGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGV 610

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
            P ++HY C+VD+ GR+G L +A++ IN+    +D ++WRT LG+C++H N+E+G+ A K
Sbjct: 611 IPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAK 670

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            +++ E      Y+LL+ +YA     + V+  RK +K   +    G SW+E+ N+VHKF 
Sbjct: 671 MIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFY 730

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
           V D SHP A  IY +L+ +  + K +GY  +  L  V     E+  EK    HSEK+A+A
Sbjct: 731 VGDTSHPKAAEIYDELQNLSVKIKKLGYVPN--LDFVLHDVEEEQKEKLLFQHSEKIAVA 788

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FGL +T     +R+ KNLR            S+A  R++IVRD  R+HH +DG CSC +Y
Sbjct: 789 FGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEY 848

Query: 551 W 551
           W
Sbjct: 849 W 849



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 164/332 (49%), Gaps = 18/332 (5%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W++++  FA +    +A+  +  M+      P+ + F    +AC   + ++    + GF
Sbjct: 135 SWSAMVSCFANNNMGFRALLTFVDMIENGY-YPNEYCFAAATRACSTAEFVSVGDSIFGF 193

Query: 115 VIRSGY-ERCVVVSTNLMRGYA-ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
           VI++GY +  V V   L+  +    G + +A  VF+ MPER+ V+W  +I+   Q  +  
Sbjct: 194 VIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAG 253

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           EA+ L+  M F     D FTL  ++S+CA++  L +G  LH  A   G      VG  L+
Sbjct: 254 EAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313

Query: 233 DMYAKCGNLDSAFC----VFSRMRKRDVLSWNSMIVGYGVHGRGD-EAISFFKQMLMAGF 287
           +MYAKC ++D + C    +F ++   +V SW +MI GY   G  D EA+  F+ M++   
Sbjct: 314 NMYAKC-SVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHV 372

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC----LVDLYGRAGKL 343
            P+  TF   L  C++   +  G + F      + +K G     C    L+ +Y R+G++
Sbjct: 373 IPNHFTFSSTLKACANLAALRIGEQVF-----THAVKLGFSSVNCVANSLISMYARSGRI 427

Query: 344 EKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
           + A +  +     + + + T++ +   + N E
Sbjct: 428 DDARKAFDILFEKNLISYNTVIDAYAKNLNSE 459



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 5/272 (1%)

Query: 71  QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130
           +AI    HM+    S PD  T++  LK C R ++ +    +H  + +S  +   V   +L
Sbjct: 49  KAISTLEHMVHQG-SHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSL 107

Query: 131 MRGYAANGVIEAARSVFDNM-PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           +  Y+  G  E A S+F  M   RDL+SW++++SC+   +    AL  +  M       +
Sbjct: 108 ISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPN 167

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKC-GNLDSAFCV 247
            +       +C+    +++G  +     + G+++S V VG  L+DM+ K  G+L SAF V
Sbjct: 168 EYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKV 227

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F +M +R+ ++W  MI      G   EAI  F  M+ +G+ PD  T  G++  C++  L+
Sbjct: 228 FEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELL 287

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
             G +  H    R+ L        CL+++Y +
Sbjct: 288 LLG-QQLHSQAIRHGLTLDRCVGCCLINMYAK 318



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 4/196 (2%)

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           +A+   E M  +    D  T    L  C    + ++G  +H    +          N+L+
Sbjct: 49  KAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLI 108

Query: 233 DMYAKCGNLDSAFCVFSRM-RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
            +Y+KCG  + A  +F  M   RD++SW++M+  +  +  G  A+  F  M+  G++P+ 
Sbjct: 109 SLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNE 168

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-LVDLYGRA-GKLEKALEV 349
             F      CS    V  G   F  ++    L+  +   GC L+D++ +  G L  A +V
Sbjct: 169 YCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVC-VGCGLIDMFVKGRGDLVSAFKV 227

Query: 350 INTSSPSDPVLWRTLL 365
                  + V W  ++
Sbjct: 228 FEKMPERNAVTWTLMI 243


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 193/525 (36%), Positives = 307/525 (58%), Gaps = 18/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           +Q LF  ++   + +W  +I    Q+    +A+  +  M +A  +  D FTF   L AC 
Sbjct: 223 SQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAM-DQFTFGSVLTACG 281

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + AL + +++H +VIR+ ++  V V + L+  Y+    I++A +VF  MP+++++SW +
Sbjct: 282 SLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTA 341

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  Y Q  F  EA+K++  M+   V  D FTL  ++SSCA++ +L  G   H  A   G
Sbjct: 342 MLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSG 401

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            +  + V NAL+ +Y KCG+ +++  +F+ M  RD +SW +++ GY   G+ +E I  F+
Sbjct: 402 LISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFE 461

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML  G  PD +TF+G+L  CS  GLVE+G++YF  M+  + + P + H  C++DL GRA
Sbjct: 462 RMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRA 521

Query: 341 GKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G+LE+A   IN + P  P  V W TLL SC++H ++EIG+ A  +L+ LE  +   YVLL
Sbjct: 522 GRLEEARNFIN-NMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLL 580

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           +++YA     + VA+ R+ ++   ++  PG+SWI+   +VH F  DD+S P    IY +L
Sbjct: 581 SSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAEL 640

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           E++ ++    GY  D S V      SE    K   +HSEKLAIAFGL   P G  +R++K
Sbjct: 641 EKLNYKMIEEGYVPDMSSVLHDVEESEKI--KMLNHHSEKLAIAFGLIFVPPGLPIRVIK 698

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S    R+++VRD VR+H F+DG CSCGD+W
Sbjct: 699 NLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 132/504 (26%), Positives = 219/504 (43%), Gaps = 47/504 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           LS  Q +FN +      +WN  I  +A   S   A+  Y  ML  +    +  TF+  L 
Sbjct: 87  LSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLI 146

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV- 156
            C + + ++  ++++G +++ G+   V V + L+  Y   G+I  A+  FD MPER++V 
Sbjct: 147 LCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVM 206

Query: 157 ------------------------------SWNSIISCYTQASFHLEALKLYERMRFEDV 186
                                         SW  +I+   Q     EAL ++  MR    
Sbjct: 207 CNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGF 266

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
            +D FT   +L++C  + AL  G  +H         ++V+VG+ALVDMY+KC ++ SA  
Sbjct: 267 AMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAET 326

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF RM +++V+SW +M+VGYG +G  +EA+  F +M   G  PD  T   ++  C++   
Sbjct: 327 VFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLAS 386

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL- 365
           +EEG + FH       L   I     L+ LYG+ G  E +  +    +  D V W  LL 
Sbjct: 387 LEEGAQ-FHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLA 445

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNG 422
           G  +  +  E   I +   +            +  + AC++    E+G+     +IK +G
Sbjct: 446 GYAQFGKANET--IGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHG 503

Query: 423 IKTTPGWSWIEIG--------NQVHKFVVDDKSHPDADMIYRKLEEI-MHRAKFIGYTKD 473
           I          I          +   F+ +   HPD       L    +H    IG    
Sbjct: 504 IMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAA 563

Query: 474 ESLVAVSGSSSEDFLEKSSAYHSE 497
           +SL+A+   +   ++  SS Y S+
Sbjct: 564 DSLIALEPQNPASYVLLSSLYASK 587



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 139/333 (41%), Gaps = 64/333 (19%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LK C   +   + ++LH  ++++  +    +S NL+  Y   G +  A  VFD++P+ +L
Sbjct: 12  LKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNL 71

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFED------------------------------ 185
            SWN+I+S Y++     +  +++  M F D                              
Sbjct: 72  FSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKD 131

Query: 186 --VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK------ 237
             + L+  T   +L  C+    +++G  ++    + GF   V+VG+ LVDMY K      
Sbjct: 132 AAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYD 191

Query: 238 -------------------------CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
                                    CG ++ +  +F  +++RD +SW  MI G   +G  
Sbjct: 192 AKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLE 251

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EA+  F++M +AGF  D  TF  +L  C     + EG +  H  V R + K  +     
Sbjct: 252 REALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQ-IHAYVIRTDHKDNVFVGSA 310

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           LVD+Y +   ++ A  V       + + W  +L
Sbjct: 311 LVDMYSKCRSIKSAETVFKRMPQKNVISWTAML 343


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 188/485 (38%), Positives = 288/485 (59%), Gaps = 26/485 (5%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           RPD  T    + AC ++  L + + LH +    G +  + V+  ++  Y     IE+A+ 
Sbjct: 8   RPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQE 67

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF+ + E+D++SW S++S   ++ +  E+L L+ +M+   +  D  TLV +LS+CA  GA
Sbjct: 68  VFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGA 127

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L+ G ++H +  +      + +  ALVDMYAKCG++D A  VF RMR R+V +WN+MI G
Sbjct: 128 LDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGG 187

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
             +HG G++AIS F QM      PD +TF+ LLC CSH GLV+EG+  F  M +++ ++P
Sbjct: 188 LAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEP 247

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            ++HYGC+VDL  RA K++ AL  I N    ++ VLW TLLG+C+   + ++ E   + +
Sbjct: 248 RMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRV 307

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           ++LE  S G YV+L+ +YA     +   + RK +K+ GI+ TPG SWIE+   +H+FV  
Sbjct: 308 IELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAG 367

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSS------EDFLEKSSAYHSEK 498
           D+SH   + IY  +EE+  R    G         V G+++      E+  E S   HSEK
Sbjct: 368 DRSHLQTEQIYAMIEEMTRRVNLDGGH-------VPGTANVLFDIEEEEKEHSLFLHSEK 420

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LAIA GL +TP G+ +RIVKNLR            S  Y+R+++ RDR R+HHF++G CS
Sbjct: 421 LAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCS 480

Query: 547 CGDYW 551
           C D+W
Sbjct: 481 CMDFW 485



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 134/234 (57%), Gaps = 5/234 (2%)

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           + +++  D  T+V L+ +CA +G L  G  LH  + E+G  E++ V NA++DMY KC ++
Sbjct: 3   KLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDI 62

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           +SA  VF+R+R++DVLSW SM+ G    G   E+++ F++M +    PD IT +G+L  C
Sbjct: 63  ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSAC 122

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
           +  G +++G +Y H+++ ++ +   +     LVD+Y + G ++ AL+V       +   W
Sbjct: 123 AQTGALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTW 181

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVA 412
             ++G   +H + E   I++ + ++ +     D   +A + AC+     +EG+A
Sbjct: 182 NAMIGGLAMHGHGE-DAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLA 234



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 119/258 (46%), Gaps = 5/258 (1%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
             +  AQ +FN+I+     +W S++   A+S    +++  +  M +  +  PD  T    
Sbjct: 60  DDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIE-PDEITLVGV 118

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L AC +  AL++ + +H  + +      +V+ T L+  YA  G I+ A  VF  M  R++
Sbjct: 119 LSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNV 178

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
            +WN++I          +A+ L+++M  + +  D  T + LL +C+H G ++ G+ + + 
Sbjct: 179 FTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQA 238

Query: 216 ACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGD 273
                 +E  +     +VD+  +   +D A      M  K + + W +++      G  D
Sbjct: 239 MKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFD 298

Query: 274 EAISFFKQMLMAGFHPDS 291
            A    ++++     PDS
Sbjct: 299 LAEKIXRRVI--ELEPDS 314


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/526 (36%), Positives = 298/526 (56%), Gaps = 26/526 (4%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F  +      +WN++I   AQ+     A+     M  A L RPD+FT +  L       
Sbjct: 192 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADL-RPDSFTLSSVLPIFAEYV 250

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L K +E+HG+ IR+GY+  V + ++L+  YA    ++ +  VF  +P+ D +SWNSII+
Sbjct: 251 NLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIA 310

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
              Q     E LK +++M    +  +  +   ++ +CAH+  L++G  LH       F  
Sbjct: 311 GCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDG 370

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           +V++ +ALVDMYAKCGN+ +A  +F +M   D++SW +MI+GY +HG   +AIS FK+M 
Sbjct: 371 NVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRME 430

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
           + G  P+ + F+ +L  CSH GLV+E  +YF+ M   Y + PG++HY  + DL GR G+L
Sbjct: 431 VEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRL 490

Query: 344 EKALEVINTS--SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           E+A E I+     P+  V W TLL +C++H+N+E+ E   K L  ++  + G YVLL+ I
Sbjct: 491 EEAYEFISDMHIEPTGSV-WSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNI 549

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           Y+     +   + R  ++  G+K  P  SWIEI N+VH FV  DKSHP  D I   L+ +
Sbjct: 550 YSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVL 609

Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY----HSEKLAIAFGLATTPDGTSLRIV 517
           + + +  GY  D + V        D  E+   Y    HSE+LAI FG+ +TP GT++R+ 
Sbjct: 610 LEQMEREGYVLDTTEVL------HDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVT 663

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S    R+++VRD  R+HHF+DG CSCGD+W
Sbjct: 664 KNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 200/430 (46%), Gaps = 44/430 (10%)

Query: 17  QAHEIHGEWL--------LNSYAISVSSSLSY---AQLLFNQIQNPQTQ-AWNSLIRAFA 64
           QA ++H + L        L S  +S+ S+L+    + L+FN + +P T  AW S+IR + 
Sbjct: 23  QAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYT 82

Query: 65  QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCV 124
                L ++ ++  ML AS   PD   F   LK+C  +K L   + +HG +IR G    +
Sbjct: 83  SHGLFLHSLSFFIQML-ASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDL 141

Query: 125 VVSTNLMRGYAANGVIE-----------------------------AARSVFDNMPERDL 155
                LM  Y+    +E                             + R VF+ MP+RD+
Sbjct: 142 YTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDI 201

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSWN++IS   Q   H +AL +   M   D+  D FTL  +L   A    L  G  +H  
Sbjct: 202 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 261

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A   G+   V++G++L+DMYAKC  +D +  VF  + + D +SWNS+I G   +G  DE 
Sbjct: 262 AIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEG 321

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           + FF+QML+A   P+ ++F  ++  C+H   +  G +  H  + R      +     LVD
Sbjct: 322 LKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQ-LHGYIIRSRFDGNVFIASALVD 380

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           +Y + G +  A  + +     D V W  ++    +H +     I++   +++E       
Sbjct: 381 MYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHA-YDAISLFKRMEVEGVKPNYV 439

Query: 396 VLLATIYACT 405
             +A + AC+
Sbjct: 440 AFMAVLTACS 449



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 131/303 (43%), Gaps = 32/303 (10%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+    VK+ ++ ++LH  ++R+      ++ST ++  Y+   ++  +  +F+++P    
Sbjct: 12  LQNPSSVKSKSQAKQLHAQILRTSLPSPSLLST-ILSIYSNLNLLHDSLLIFNSLPSPPT 70

Query: 156 -VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            ++W SII CYT     L +L  + +M       D      +L SC  +  L  G  +H 
Sbjct: 71  TLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHG 130

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLD-----------------------------SAF 245
               +G    +Y  NAL++MY+K  +L+                             S  
Sbjct: 131 CIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLR 190

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  M KRD++SWN++I G   +G  ++A+   ++M  A   PDS T   +L   +   
Sbjct: 191 KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYV 250

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            + +G E  H    R      +     L+D+Y +  +++ +  V       D + W +++
Sbjct: 251 NLLKGKE-IHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 309

Query: 366 GSC 368
             C
Sbjct: 310 AGC 312


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 206/575 (35%), Positives = 314/575 (54%), Gaps = 62/575 (10%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS--PLQAIFYYNHMLMASLSRPDTFTFTF 94
            L YA  +FNQ+      +WN++IR F++S     L AI  +  M+      P+ FTF  
Sbjct: 74  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133

Query: 95  TLKACERVKALNKCQELHGFVIRSGY--------------------------------ER 122
            LKAC +   + + +++HG  ++ G+                                E+
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193

Query: 123 CVVVSTN-------------LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
            +VV T+             ++ GY   G  +AAR +FD M +R +VSWN++IS Y+   
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253

Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
           F  +A++++  M+  D+  +  TLV +L + + +G+L +G +LH  A + G      +G+
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGS 313

Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
           AL+DMY+KCG ++ A  VF R+ + +V++W++MI G+ +HG+  +AI  F +M  AG  P
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 373

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE- 348
             + ++ LL  CSH GLVEEG  YF  MVS   L+P I+HYGC+VDL GR+G L++A E 
Sbjct: 374 SDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEF 433

Query: 349 VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408
           ++N     D V+W+ LLG+C++  NVE+G+     L+ +    +G YV L+ +YA   + 
Sbjct: 434 ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNW 493

Query: 409 EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFI 468
             V+  R  +K   I+  PG S I+I   +H+FVV+D SHP A  I   L EI  + +  
Sbjct: 494 SEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLA 553

Query: 469 GYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------- 521
           GY    + V +  +  E+  E    YHSEK+A AFGL +T  G  +RIVKNLR       
Sbjct: 554 GYRPITTQVLL--NLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHS 611

Query: 522 -----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                S  Y R + VRDR R+HHF+DG CSC DYW
Sbjct: 612 SIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 204/540 (37%), Positives = 305/540 (56%), Gaps = 20/540 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ YA      L  A+ LFN +      +W ++I    +S    +    +  M   ++ 
Sbjct: 238 LLDMYA--KCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIF 295

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+  T    +  C    AL   ++LH +++R+G+   + ++T L+  Y     I  AR+
Sbjct: 296 -PNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARA 354

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD+   RD++ W +++S Y QA+   +A  L+++MR   V     T+V LLS CA  GA
Sbjct: 355 LFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGA 414

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L++G ++H    +        +  ALVDMYAKCG++++A  +F     RD+  WN++I G
Sbjct: 415 LDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITG 474

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           + +HG G+EA+  F +M   G  P+ ITF+GLL  CSH GLV EG + F  MV  + L P
Sbjct: 475 FAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVP 534

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKN 383
            I+HYGC+VDL GRAG L++A E+I  S P  P  ++W  L+ +C++H+N ++GE+A   
Sbjct: 535 QIEHYGCMVDLLGRAGLLDEAHEMIK-SMPIKPNTIVWGALVAACRLHKNPQLGELAATQ 593

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           L+++E  + G  VL++ IYA        A  RK +K+ G+K  PG S IE+   VH+F++
Sbjct: 594 LLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLM 653

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
            D+SHP    I   L E+  +    GY  D S V ++    E   E +  YHSEKLA+AF
Sbjct: 654 GDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEK--ETALTYHSEKLAMAF 711

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           GL +T   T +RIVKNLR            S  Y R +IVRDR R+HHFR+G CSCGDYW
Sbjct: 712 GLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 189/398 (47%), Gaps = 18/398 (4%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS---PLQAIFYYNHMLMASLSRPDTFTF 92
           + + YA+L+F+++      +W+++IR+ +++      L+ I   N M +    RP     
Sbjct: 143 ACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQV----RPSEVAM 198

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYER--CVVVSTNLMRGYAANGVIEAARSVFDNM 150
              +        +   + +H +VIR+       V  +T L+  YA  G +  AR +F+ +
Sbjct: 199 VSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGL 258

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
            ++ +VSW ++I+   +++   E  KL+ RM+ E++  +  T++ L+  C   GAL +G 
Sbjct: 259 TQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGK 318

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            LH      GF  S+ +  ALVDMY KC ++ +A  +F   + RDV+ W +M+  Y    
Sbjct: 319 QLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQAN 378

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
             D+A + F QM  +G  P  +T + LL  C+  G ++ G ++ H  + +  ++      
Sbjct: 379 CIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG-KWVHSYIDKERVEVDCILN 437

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE-- 388
             LVD+Y + G +  A  +   +   D  +W  ++    +H     GE A+    ++E  
Sbjct: 438 TALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMH---GYGEEALDIFAEMERQ 494

Query: 389 AASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGI 423
                D   +  ++AC+      EG     K++ + G+
Sbjct: 495 GVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGL 532



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 135/280 (48%), Gaps = 3/280 (1%)

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           F     LKAC +V      +E+HGFV++ G +R V V   LM  Y     +E AR VFD 
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           M ERD+VSW+++I   ++      AL+L   M F  V      +V +++  A    + MG
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 210 IFLHRIACEMGFVE--SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
             +H         E   V    AL+DMYAKCG+L  A  +F+ + ++ V+SW +MI G  
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
              R +E    F +M      P+ IT L L+  C   G ++ G +  H  + R      +
Sbjct: 275 RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLG-KQLHAYILRNGFSVSL 333

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
                LVD+YG+   +  A  + +++   D ++W  +L +
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSA 373



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 4/216 (1%)

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
           F    +L +C  V    +G  +H    + G    V+VGNAL+ MY +C  ++ A  VF +
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           M +RDV+SW++MI     +   D A+   ++M      P  +  + ++   +    +  G
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 311 VEYFHMMVSR--YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            +  H  V R   N   G+     L+D+Y + G L  A ++ N  +    V W  ++  C
Sbjct: 215 -KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
                +E G      + Q E     +  +L+ I  C
Sbjct: 274 IRSNRLEEGTKLFIRM-QEENIFPNEITMLSLIVEC 308


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 204/552 (36%), Positives = 320/552 (57%), Gaps = 29/552 (5%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSP---LQAIFYYNHMLM- 81
           +L  Y+     +L+YA  +F+   NP +  WN+LIR +A+S +     +A+  Y  M+  
Sbjct: 63  ILQHYSSLTQPNLTYATRVFHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTM 122

Query: 82  -ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
               + PD  TF   LKAC    +L + +++H  V++ G+E    +  +L+  YA  G +
Sbjct: 123 EEKTAVPDNHTFPIVLKACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCL 182

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY-ERMRFEDVGLDGFTLVCLLSS 199
           + A  +F  M ER+ VSWN +I  Y +      AL+++ E  R  D   DG+T+  ++S+
Sbjct: 183 DLAEKMFYKMSERNEVSWNIMIDSYAKGGIFDTALRMFGEMQRVHDP--DGYTMQSVISA 240

Query: 200 CAHVGALNMGIFLHRI---ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           CA +GAL++G+++H      C+   V+ V V   LVDMY K G L+ A  VF  M  RD+
Sbjct: 241 CAGLGALSLGLWVHAYILKKCDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDL 300

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
            +WNSMI+G  +HG    A++++ +M+ +    P+SITF+G+L  C+H+G+V+EG+ +F 
Sbjct: 301 NAWNSMILGLAMHGEAKAALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFD 360

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGS-CKIHRN 373
           MM   YN++P ++HYGCLVDL+ RAG++ +AL +++  S   D V+WR+LL + CK + +
Sbjct: 361 MMTKEYNVEPRLEHYGCLVDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDACCKQYAS 420

Query: 374 VEIGEIAMKNLVQLEAA--SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSW 431
           VE+ E   K + + E +  S+G YVLL+ +YA       V   RKL+   G+   PG S 
Sbjct: 421 VELSEEMAKQVFESEGSVCSSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSI 480

Query: 432 IEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKS 491
           IEI   VH+F   D +HP ++ IY+ + EI  + + IGY  D S   +    ++  L  +
Sbjct: 481 IEIDGVVHEFFAGDTTHPKSENIYKVVTEIEEKLESIGYLPDYSGAPMVDEVNDGKL-NT 539

Query: 492 SAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHH 539
              HSE+LAIAFG+  +     +R+ KNLR            S  Y+ ++IVRDR R+HH
Sbjct: 540 LRLHSERLAIAFGILNSKPDVPIRVFKNLRVCNDCHRVTKLISRIYNVEIIVRDRARFHH 599

Query: 540 FRDGLCSCGDYW 551
           F+DG CSC DYW
Sbjct: 600 FKDGTCSCMDYW 611


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 205/573 (35%), Positives = 324/573 (56%), Gaps = 33/573 (5%)

Query: 6   HARYVGLNKARQAHE-------IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNS 58
           +AR  GL  AR+  +       +    L+  YA         A+ +F++I      +WN+
Sbjct: 109 YARNGGLEDARKVFDASSHRDVVSCTALITGYA--SRGDFRSARKVFDEITERDVVSWNA 166

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           +I  + ++    +A+  +  M+  ++ RPD  T    + AC +  ++   +++H +V   
Sbjct: 167 MITGYVENGRYEEALELFKEMMRTNV-RPDEGTLVSVVSACAQSGSIELGRQVHSWVDDD 225

Query: 119 ----GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
               G+   + +   L+  Y+  G +E A  +F+ +  +D+VSWN++I  YT  + + EA
Sbjct: 226 DDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEA 285

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM--GFVESVYVGNALV 232
           L L++ M       +  TL+ +L +CAH+GA+++G ++H    +   G      +  +L+
Sbjct: 286 LLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLI 345

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           DMYAKCG++++A  VF+ M  R + SWN+MI G+ +HGR + A   F +M      PD I
Sbjct: 346 DMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDI 405

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TF+GLL  CSH GL++ G + F  M   YNL P ++HYGC++DL G +G  ++A E+I+T
Sbjct: 406 TFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHT 465

Query: 353 SSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410
             P +P  V+W +LL +CK H N+E+ E   + L+++E  ++G YVLL+ IYA     E 
Sbjct: 466 -MPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWED 524

Query: 411 VARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY 470
           VAR R ++   G+K  PG S IE+ + VH+F++ DK HP    IY  LEE+  + +  G+
Sbjct: 525 VARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGF 584

Query: 471 TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
             D S   V     E++ E +  +HSEKLAIAFGL +T  GT L IVKNLR         
Sbjct: 585 APDTS--EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAT 642

Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              S  Y R+++ RDR R+HHFRDG+CSC DYW
Sbjct: 643 KLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 200/367 (54%), Gaps = 51/367 (13%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR-PDTFTFTFTL 96
           L YA  +F  IQ P    WN+++R  A S  P+ A+  Y  + M SL   P++++F F L
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMY--VRMVSLGHLPNSYSFPFLL 71

Query: 97  KACERVKALNKCQELHGFVIRSG-------------------------------YERCVV 125
           K+C + KA  + +++H  V++ G                                 R VV
Sbjct: 72  KSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVV 131

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
             T L+ GYA+ G   +AR VFD + ERD+VSWN++I+ Y +   + EAL+L++ M   +
Sbjct: 132 SCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTN 191

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHR----IACEMGFVESVYVGNALVDMYAKCGNL 241
           V  D  TLV ++S+CA  G++ +G  +H        + GF  S+ + NAL+D+Y+KCG++
Sbjct: 192 VRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDV 251

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           ++AF +F  +  +DV+SWN++I GY       EA+  F++ML +G  P+ +T L +L  C
Sbjct: 252 ETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPAC 311

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKH----YGCLVDLYGRAGKLEKALEVINTSSPSD 357
           +H G ++ G  + H+ + +  LK G+ +       L+D+Y + G +E A +V N+     
Sbjct: 312 AHLGAIDIG-RWIHVYIDK-KLK-GVTNETSLRTSLIDMYAKCGDIEAAHQVFNS----- 363

Query: 358 PVLWRTL 364
            +L+R+L
Sbjct: 364 -MLYRSL 369



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 31/221 (14%)

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           L  A  VF  +++ ++L WN+M+ G+        A+  + +M+  G  P+S +F  LL  
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHY--GCLVDLYGRAGKLEKALEVINTSSPSDP 358
           C+     EEG +  H  V +  L  G+  Y    L+ +Y R G LE A +V + SS  D 
Sbjct: 74  CAKSKAFEEGRQ-IHAQVLK--LGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 359 VLWRTLL------GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           V    L+      G  +  R V   EI  +++V   A   G YV         + EE + 
Sbjct: 131 VSCTALITGYASRGDFRSARKV-FDEITERDVVSWNAMITG-YV------ENGRYEEALE 182

Query: 413 RTRKLIKSNGIKTTPGW-----------SWIEIGNQVHKFV 442
             ++++++N ++   G              IE+G QVH +V
Sbjct: 183 LFKEMMRTN-VRPDEGTLVSVVSACAQSGSIELGRQVHSWV 222


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 199/533 (37%), Positives = 307/533 (57%), Gaps = 29/533 (5%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA-SLSRPDTFTFTFTLKAC 99
           A+  F++I +P      ++   + ++     ++  +  M+ + S S  D         A 
Sbjct: 148 ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 207

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV--IEAARSVFDNMPERDLVS 157
            RV        LH  + + G+ER   V   ++  YA  G   +E AR VFD M ERD+VS
Sbjct: 208 ARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVS 266

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRI 215
           WNS+I+ Y Q     EA+ LY +M     G+  +   L  +L +CAH GA+  G  +H  
Sbjct: 267 WNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQ 326

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
              MG  E+VYVG ++VDMY+KCG ++ A   F +++++++LSW++MI GYG+HGRG EA
Sbjct: 327 VVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEA 386

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F +M  +G  P+ ITF+ +L  CSH GL++EG  +++ M   + ++ G++HYGC+VD
Sbjct: 387 LEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVD 446

Query: 336 LYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           L GRAG L++A  +I       D  +W  LL +C+IH+NVE+ E+++K L +L+A+++G 
Sbjct: 447 LLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGY 506

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ IYA  +  + V R R L+K+  I+  PG+S  E+  +++ F V DKSHP    I
Sbjct: 507 YVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEI 566

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDF--LEKSSAY--HSEKLAIAFGLATTPD 510
           Y  LE+++ R +  GY  +      +GS   D    EK SA   HSEKLA+AF L  +  
Sbjct: 567 YSYLEKLLERMQEAGYVPN------TGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVP 620

Query: 511 GTSLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + + I+KNLR  +              R++I+RD  R+HHF+DGLCSC DYW
Sbjct: 621 RSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 673


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/529 (36%), Positives = 307/529 (58%), Gaps = 18/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++ AQ +F++I      +WN++I  +A++ +  +A+  +  M+  ++ RPD  T    + 
Sbjct: 170 IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNV-RPDESTMVSVVS 228

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC +  ++   +++H ++   G+   + +   L+  Y   G +E A  +F+ +  +D++S
Sbjct: 229 ACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVIS 288

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++I  YT  + + EAL L++ M       +  T++ +L +CAH+GA+ +G ++H    
Sbjct: 289 WNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYIN 348

Query: 218 E--MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           +   G   +     +L+DMYAKCG++++A  VF  +  R + SWN+MI G+ +HGR + A
Sbjct: 349 KRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAA 408

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
              F +M      PD ITF+GLL  CSH G+++ G   F  M   Y + P ++HYGC++D
Sbjct: 409 FDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMID 468

Query: 336 LYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           L G +G  ++A E+INT     D V+W +LL +CK+H NVE+GE   +NL+++E  + G 
Sbjct: 469 LLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGS 528

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ IYA       VA+ R L+   G+K  PG S IEI + VH+F++ DK HP    I
Sbjct: 529 YVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREI 588

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y  LEE+    +  G+  D S   V     E++ E +  +HSEKLAIAFGL +T  GT L
Sbjct: 589 YGMLEEMEVLLEEAGFVPDTS--EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKL 646

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            IVKNLR            S  Y R++I RDR R+HHFRDG+CSC DYW
Sbjct: 647 TIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 195/367 (53%), Gaps = 35/367 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA  +F  IQ P    WN++ R  A S  P+ A++ Y  M+   L  P+ +TF F LK
Sbjct: 38  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGL-LPNCYTFPFLLK 96

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           +C + KA  + Q++HG V++ GY+                               R VV 
Sbjct: 97  SCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVS 156

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L+ GYA+ G I +A+ +FD +P +D+VSWN++IS Y +   + EAL+L++ M   +V
Sbjct: 157 YTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNV 216

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T+V ++S+CA   ++ +G  +H    + GF  ++ + NAL+D+Y KCG +++A  
Sbjct: 217 RPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACG 276

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F  +  +DV+SWN++I GY       EA+  F++ML +G  P+ +T L +L  C+H G 
Sbjct: 277 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGA 336

Query: 307 VEEGVEYFHMMVSR--YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364
           +E G  + H+ +++    +     H   L+D+Y + G +E A +V ++        W  +
Sbjct: 337 IEIG-RWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAM 395

Query: 365 LGSCKIH 371
           +    +H
Sbjct: 396 IFGFAMH 402



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 27/221 (12%)

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           L  A  VF  +++ ++L WN+M  G+ +      A+  +  M+  G  P+  TF  LL  
Sbjct: 38  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 97

Query: 301 CSHQGLVEEGVE-YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
           C+      EG + + H++   Y+L   +  +  L+ +Y + G+LE A +V + SS  D V
Sbjct: 98  CAKSKAFREGQQIHGHVLKLGYDLDLYV--HTSLISMYVQNGRLEDARKVFDQSSHRDVV 155

Query: 360 LWRTLLGSCKIHRNVE-----IGEIAMKNLVQLEAASAGDYVLLATIYACT-KDEEGVAR 413
            +  L+        +        EI +K++V   A  +G        YA T  ++E +  
Sbjct: 156 SYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISG--------YAETGNNKEALEL 207

Query: 414 TRKLIKSN----------GIKTTPGWSWIEIGNQVHKFVVD 444
            ++++K+N           +      + IE+G QVH ++ D
Sbjct: 208 FKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD 248


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 213/589 (36%), Positives = 315/589 (53%), Gaps = 60/589 (10%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVS-----SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS 66
           L +AR+  E    W L S+   +      + L  A+ LF+++      +WN++I  +AQ 
Sbjct: 186 LKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQV 245

Query: 67  LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQE---------------- 110
               QA   +N   +      D FT+T  +    +   +++ ++                
Sbjct: 246 GDLSQAKRLFNESPIR-----DVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAM 300

Query: 111 LHGFVIRSGYERCVVVS--------------TNLMRGYAANGVIEAARSVFDNMPERDLV 156
           L G+V    Y++ V+                  ++ GY  NG I  AR +FD MP+RD V
Sbjct: 301 LAGYV---QYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCV 357

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW +IIS Y Q   + EAL ++  M+ +    +  T  C LS+CA + AL +G  +H   
Sbjct: 358 SWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQV 417

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF    +VGNAL+ MY KCG+ D A  VF  + ++DV+SWN+MI GY  HG G +A+
Sbjct: 418 VKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQAL 477

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F+ M  AG  PD IT +G+L  CSH GL++ G EYF+ M   YN+KP  KHY C++DL
Sbjct: 478 VLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDL 537

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG+LE+A E +  + P DP    W  LLG+ +IH N E+GE A + + ++E  ++G 
Sbjct: 538 LGRAGRLEEA-ENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGM 596

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ +YA +     V + R  ++  G++   G+SW+E+ N++H F V D  HP+ D I
Sbjct: 597 YVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRI 656

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y  LEE+  + +  GY     LV       E   E    YHSEKLA+AFG+ T P G  +
Sbjct: 657 YAFLEELDLKMRREGYVSSTKLVLHDVEEEEK--EHMLKYHSEKLAVAFGILTIPAGRPI 714

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++KNLR            S    R +I+RD  R+HHF +G+CSCGDYW
Sbjct: 715 RVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 144/324 (44%), Gaps = 30/324 (9%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +FN +    + ++N++I  + ++     A F     L   +   D F++   L    R +
Sbjct: 68  VFNSMPRRSSVSYNAMISGYLRN-----AKFSLARDLFDKMPERDLFSWNVMLTGYVRNR 122

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSII 162
            L +  +L   + +       VVS N M  GYA NG ++ AR VF+ MP R+ +SWN ++
Sbjct: 123 RLGEAHKLFDLMPKKD-----VVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLL 177

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           + Y       EA +L+E         +  +  CL+        L       R   +   V
Sbjct: 178 AAYVHNGRLKEARRLFE----SQSNWELISWNCLMGGYVKRNMLGDA----RQLFDRMPV 229

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
             V   N ++  YA+ G+L  A  +F+    RDV +W +M+ GY  +G  DEA  +F +M
Sbjct: 230 RDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM 289

Query: 283 LMAGFHPDSITFLGLLCG-CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
            +     + I++  +L G   ++ +V  G E F  M  R      I  +  ++  YG+ G
Sbjct: 290 PV----KNEISYNAMLAGYVQYKKMVIAG-ELFEAMPCR-----NISSWNTMITGYGQNG 339

Query: 342 KLEKALEVINTSSPSDPVLWRTLL 365
            + +A ++ +     D V W  ++
Sbjct: 340 GIAQARKLFDMMPQRDCVSWAAII 363



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 155/362 (42%), Gaps = 43/362 (11%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  LF+ +      +WN+++  +AQ+    +A   +N M        ++ ++   L 
Sbjct: 124 LGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM-----PHRNSISWNGLLA 178

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTN-LMRGYAANGVIEAARSVFDNMPERDLV 156
           A      L + + L  F  +S +E   ++S N LM GY    ++  AR +FD MP RD++
Sbjct: 179 AYVHNGRLKEARRL--FESQSNWE---LISWNCLMGGYVKRNMLGDARQLFDRMPVRDVI 233

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL---------- 206
           SWN++IS Y Q     +A +L+      DV    FT   ++S     G +          
Sbjct: 234 SWNTMISGYAQVGDLSQAKRLFNESPIRDV----FTWTAMVSGYVQNGMVDEARKYFDEM 289

Query: 207 ---NMGIFLHRIACEMGFVESVYVG--------------NALVDMYAKCGNLDSAFCVFS 249
              N   +   +A  + + + V  G              N ++  Y + G +  A  +F 
Sbjct: 290 PVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFD 349

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            M +RD +SW ++I GY  +G  +EA++ F +M   G   +  TF   L  C+    +E 
Sbjct: 350 MMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALEL 409

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCK 369
           G +  H  V +   + G      L+ +Y + G  ++A +V       D V W T++    
Sbjct: 410 GKQ-VHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYA 468

Query: 370 IH 371
            H
Sbjct: 469 RH 470



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 48/242 (19%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           +V     +  +  NG  ++A  VF++MP R  VS+N++IS Y + +    A  L+++M  
Sbjct: 46  IVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPE 105

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
            D                                       ++  N ++  Y +   L  
Sbjct: 106 RD---------------------------------------LFSWNVMLTGYVRNRRLGE 126

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F  M K+DV+SWN+M+ GY  +G  DEA   F +M     H +SI++ GLL    H
Sbjct: 127 AHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP----HRNSISWNGLLAAYVH 182

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
            G ++E    F    S+ N +  +  + CL+  Y +   L  A ++ +     D + W T
Sbjct: 183 NGRLKEARRLFE---SQSNWE--LISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNT 237

Query: 364 LL 365
           ++
Sbjct: 238 MI 239


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 199/533 (37%), Positives = 312/533 (58%), Gaps = 22/533 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++ YA  +F    NP    + +LI  F  S + L+AI  Y+ ML  S+  PD +     L
Sbjct: 86  AIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESIL-PDNYLMASIL 144

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---- 152
           KAC    AL + +E+H   ++ G+    +V   +M  Y   G +  AR VF+ MPE    
Sbjct: 145 KACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVA 204

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           +D V W ++I  + +      AL+ +  M+ E+V  + FT+VC+LS+C+ +GAL +G ++
Sbjct: 205 KDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWV 264

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H    +     +++VGNAL++MY++CG++D A  VF  M+ RDV+++N+MI G  ++G+ 
Sbjct: 265 HSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKS 324

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            +AI  F+ M+     P ++TF+G+L  CSH GLV+ G E FH M   Y ++P I+HYGC
Sbjct: 325 RQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGC 384

Query: 333 LVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           +VDL GR G+LE+A ++I T     D ++  TLL +CK+H+N+E+GE   K L     A 
Sbjct: 385 MVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQAD 444

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
           +G YVLL+ +YA +   +  A+ R  +K  G++  PG S IE+ N++H+F++ D  HP  
Sbjct: 445 SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQK 504

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
           + IY KLEE+    +  GY  ++ +V       E   E + A HSE+LAI +GL +T   
Sbjct: 505 ERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEK--EWALAMHSERLAICYGLISTEPC 562

Query: 512 TSLRIVKNLRSIAYS-------------RDLIVRDRVRYHHFRDGLCSCGDYW 551
           T +R++KNLR + Y              R ++VRDR R+H+F +G CSCGDYW
Sbjct: 563 TMIRVMKNLR-VCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 133/270 (49%), Gaps = 5/270 (1%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
           +R + +N+   +H  +IR+G+ +   +   L+R  +    I+ A  +F      ++  + 
Sbjct: 47  QRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYT 106

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++I  +  +  +LEA++LY RM  E +  D + +  +L +C    AL  G  +H  A ++
Sbjct: 107 ALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKL 166

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK----RDVLSWNSMIVGYGVHGRGDEA 275
           GF  +  V   ++++Y KCG L  A  VF  M +    +D + W +MI G+  +   + A
Sbjct: 167 GFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRA 226

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F+ M      P+  T + +L  CS  G +E G  + H  + ++ ++  +     L++
Sbjct: 227 LEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALIN 285

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y R G +++A  V +     D + + T++
Sbjct: 286 MYSRCGSIDEAQTVFDEMKDRDVITYNTMI 315


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/544 (37%), Positives = 305/544 (56%), Gaps = 29/544 (5%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LLN YA     SL  A+ +F+++       W +LI  ++Q   P  A+  +N ML    S
Sbjct: 92  LLNMYA--KCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFS 149

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+ FT +  +KA    +      +LHGF ++ G++  V V + L+  Y   G+++ A+ 
Sbjct: 150 -PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQL 208

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD +  R+ VSWN++I+ + +     +AL+L++ M  E      F+   L  +C+  G 
Sbjct: 209 VFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGF 268

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G ++H    + G     + GN L+DMYAK G++  A  +F R+ KRDV+SWNS++  
Sbjct: 269 LEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 328

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y  HG G+EA+ +F++M   G  P+ I+FL +L  CSH GL++EG  Y+ +M      K 
Sbjct: 329 YAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK-----KD 383

Query: 326 GIK----HYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEI 379
           GI     HY  +VDL GRAG L +AL  I    P +P   +W+ LL +C++H+N E+G  
Sbjct: 384 GIVLEAWHYVTIVDLLGRAGDLNRALRFIE-EMPIEPTAAIWKALLNACRMHKNTELGAY 442

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
           A +++ +L+    G +V+L  IYA        AR RK +K +G+K  P  SW+EI N +H
Sbjct: 443 AAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIH 502

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
            FV +D+ HP  + I RK EE++ + K +GY  D S V V     E   E +  YHSEK+
Sbjct: 503 MFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQER--EVNLQYHSEKI 560

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           A+AF L  TP G+++ I KN+R            S A  R++IVRD  R+HHF+DG CSC
Sbjct: 561 ALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSC 620

Query: 548 GDYW 551
            DYW
Sbjct: 621 KDYW 624



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 149/288 (51%), Gaps = 9/288 (3%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D   +   LK C   K L + + +HG +I+S +   +V++  L+  YA  G +E AR VF
Sbjct: 50  DRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVF 109

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D MPERD V+W ++IS Y+Q     +AL L+ +M       + FTL  ++ + A      
Sbjct: 110 DKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGC 169

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  LH    + GF  +V+VG+AL+D+Y + G +D A  VF  +  R+ +SWN++I G+ 
Sbjct: 170 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 229

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
                ++A+  F+ ML  GF P   ++  L   CS  G +E+G       V  Y +K G 
Sbjct: 230 RRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQG-----KWVHAYMIKSGE 284

Query: 328 KHYG----CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           K        L+D+Y ++G +  A ++ +  +  D V W +LL +   H
Sbjct: 285 KLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 332


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 186/530 (35%), Positives = 306/530 (57%), Gaps = 16/530 (3%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           S +   + +F+ +      +WN++I  FAQ+   ++A+     M      +PD+FT +  
Sbjct: 174 SGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSI 233

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L        +NK +E+HG+ +R+G++  V + ++L+  YA    +E +   F  +P +D 
Sbjct: 234 LPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDA 293

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           +SWNSII+   Q       L  + RM  E+V     +   ++ +CAH+ AL++G  LH  
Sbjct: 294 ISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGC 353

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
              +GF ++ ++ ++LVDMYAKCGN+  A  VF R+ KRD+++W ++I+G  +HG   +A
Sbjct: 354 IVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDA 413

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +S F+ ML  G  P  + F+ +L  CSH GLV+EG  YF+ M   + + PG++HY  + D
Sbjct: 414 VSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVAD 473

Query: 336 LYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L GRAG+LE+A + I+      P   +W  LL +C+ H++VE+ E  +  L+ +++ + G
Sbjct: 474 LLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMG 533

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            YVL++ IY+  +  +  AR R  ++  G+K TP  SWIE+GNQVH F+  DKSHP  D 
Sbjct: 534 AYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDK 593

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           I + L+ ++ + +  GY  D +   V     E+   +    HSE+LAIA+G+ +T  GT+
Sbjct: 594 INKALDVLLEQMEKEGYVIDTN--QVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTT 651

Query: 514 LRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R++KN+R  A              R++ VRD  R+HHF++G CSCGDYW
Sbjct: 652 IRVIKNIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 173/369 (46%), Gaps = 23/369 (6%)

Query: 55  AWNSLIRAFAQSLSPLQAIFY-YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
           AW+S+I+ +  S S L   F  +N M   S+  P+   F   LKA   +K       LH 
Sbjct: 77  AWSSIIKCYT-SHSLLHLSFSSFNSMRSLSVP-PNRHVFPSLLKASTLLKHHKLAHSLHA 134

Query: 114 FVIRSGYERCVVVSTNLMRGYA---------------ANGVIEAARSVFDNMPERDLVSW 158
             +R G +  + ++  L+  YA                   I+  + VFD MP RD+VSW
Sbjct: 135 CTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSW 194

Query: 159 NSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           N++I+ + Q   ++EAL +   M +   +  D FTL  +L   A    +N G  +H  A 
Sbjct: 195 NTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAV 254

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             GF   V++G++L+DMYAKC  L+ +   F  + ++D +SWNS+I G   +G  D  + 
Sbjct: 255 RNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLG 314

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
           FF++ML     P +++F  ++  C+H   +  G +  H  + R            LVD+Y
Sbjct: 315 FFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQ-LHGCIVRLGFDDNEFIASSLVDMY 373

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV- 396
            + G ++ A  V +     D V W  ++  C +H +        +N+  LE      YV 
Sbjct: 374 AKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENM--LEDGVRPCYVA 431

Query: 397 LLATIYACT 405
            +A + AC+
Sbjct: 432 FMAVLTACS 440


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 197/526 (37%), Positives = 301/526 (57%), Gaps = 21/526 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+++F+ +    + +WN++I  +AQ+    +A+  +N M+   +   D       L+AC 
Sbjct: 215 ARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLA-ALQACG 273

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +  L++   +H  ++R G +  V V   L+  Y+    ++ A  VFD +  R  VSWN+
Sbjct: 274 ELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNA 333

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I    Q     +A++L+ RM+ E+V  D FTLV ++ + A +       ++H  +  + 
Sbjct: 334 MILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLH 393

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
             + VYV  AL+DMYAKCG ++ A  +F+  R+R V++WN+MI GYG HG G  A+  F+
Sbjct: 394 LDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFE 453

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M   G  P+  TFL +L  CSH GLV+EG EYF  M   Y L+PG++HYG +VDL GRA
Sbjct: 454 EMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRA 513

Query: 341 GKLEKALEVINTSSPSDPVL--WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           GKL++A   I    P DP L  +  +LG+CK+H+NVE+ E + + + +L       +VLL
Sbjct: 514 GKLDEAWAFIQ-KMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLL 572

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           A IYA     + VAR R  ++ NG++ TPGWS I++ N++H F     +H  A  IY +L
Sbjct: 573 ANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRL 632

Query: 459 EEIMHRAKFIGYTKD-ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
            +++   K +GY  D +S+  V        L      HSEKLAIAFGL  T  GT+++I 
Sbjct: 633 AKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNT----HSEKLAIAFGLIRTAPGTTIQIK 688

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S+   R++I+RD  R+HHF+DG CSCGDYW
Sbjct: 689 KNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 171/327 (52%), Gaps = 5/327 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+++      AWN+L+  +A++     A+     M      RPD+ T    L AC 
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACA 172

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             +AL  C+E H F IRSG E  V V+T ++  Y   G I AAR VFD MP ++ VSWN+
Sbjct: 173 NARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNA 232

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I  Y Q     EAL L+ RM  E V +   +++  L +C  +G L+ G+ +H +   +G
Sbjct: 233 MIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG 292

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              +V V NAL+ MY+KC  +D A  VF  + +R  +SWN+MI+G   +G  ++A+  F 
Sbjct: 293 LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFT 352

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE--YFHMMVSRYNLKPGIKHYGCLVDLYG 338
           +M +    PDS T + ++   +    + + ++  + H    R +L   +     L+D+Y 
Sbjct: 353 RMQLENVKPDSFTLVSVIPALAD---ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYA 409

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL 365
           + G++  A  + N++     + W  ++
Sbjct: 410 KCGRVNIARILFNSARERHVITWNAMI 436



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 153/325 (47%), Gaps = 4/325 (1%)

Query: 81  MASLSRPDTF-TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           M+S   P    TFT  LK C     L   + +H  +   G +   + +T L   YA    
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLS 198
              AR VFD MP RD V+WN++++ Y +      A+++  RM+ E+    D  TLV +L 
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLP 169

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +CA+  AL      H  A   G  E V V  A++D Y KCG++ +A  VF  M  ++ +S
Sbjct: 170 ACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVS 229

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WN+MI GY  +G   EA++ F +M+  G     ++ L  L  C   G ++EG+   H ++
Sbjct: 230 WNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMR-VHELL 288

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
            R  L   +     L+ +Y +  +++ A  V +       V W  ++  C  +   E   
Sbjct: 289 VRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSE-DA 347

Query: 379 IAMKNLVQLEAASAGDYVLLATIYA 403
           + +   +QLE      + L++ I A
Sbjct: 348 VRLFTRMQLENVKPDSFTLVSVIPA 372



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 5/215 (2%)

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           T   LL  CA  G L  G  +H      G         AL +MYAKC     A  VF RM
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEG 310
             RD ++WN+++ GY  +G    A+    +M    G  PDSIT + +L  C++   +   
Sbjct: 121 PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAAC 180

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI 370
            E  H    R  L+  +     ++D Y + G +  A  V +     + V W  ++     
Sbjct: 181 REA-HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDG--Y 237

Query: 371 HRNVEIGE-IAMKNLVQLEAASAGDYVLLATIYAC 404
            +N +  E +A+ N +  E     D  +LA + AC
Sbjct: 238 AQNGDSREALALFNRMVEEGVDVTDVSVLAALQAC 272


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 204/559 (36%), Positives = 311/559 (55%), Gaps = 47/559 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F  I+     +WNS+I  F Q  SP +A+  +  M    + +    T    L 
Sbjct: 182 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDV-KASHVTMVGVLS 240

Query: 98  ACERVKALNKCQELHGFV--------------IRSGYERC-----------------VVV 126
           AC +++ L   +++  ++              +   Y +C                  V 
Sbjct: 241 ACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 300

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-D 185
            T ++ GYA +   EAAR V ++MP++D+V+WN++IS Y Q     EAL ++  ++ + +
Sbjct: 301 WTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKN 360

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           + L+  TLV  LS+CA VGAL +G ++H    + G   + +V +AL+ MY+KCG+L+ + 
Sbjct: 361 MKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSR 420

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF+ + KRDV  W++MI G  +HG G+EA+  F +M  A   P+ +TF  + C CSH G
Sbjct: 421 EVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 480

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTL 364
           LV+E    FH M S Y + P  KHY C+VD+ GR+G LEKA++ I     P    +W  L
Sbjct: 481 LVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGAL 540

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
           LG+CKIH N+ + E+A   L++LE  + G +VLL+ IYA     E V+  RK ++  G+K
Sbjct: 541 LGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLK 600

Query: 425 TTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSS 484
             PG S IEI   +H+F+  D +HP ++ +Y KL E+M + K  GY  + S V +     
Sbjct: 601 KEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQV-LQIIEE 659

Query: 485 EDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------SIA------YSRDLIVR 532
           E+  E+S   HSEKLAI +GL +T     +R++KNLR      S+A      Y R++IVR
Sbjct: 660 EEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVR 719

Query: 533 DRVRYHHFRDGLCSCGDYW 551
           DR R+HHFR+G CSC D+W
Sbjct: 720 DRYRFHHFRNGQCSCNDFW 738



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 194/373 (52%), Gaps = 33/373 (8%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A+S  +SL YA+ +F++I  P + AWN+LIRA+A    P+ +I+ +  M+  S   P+ +
Sbjct: 73  ALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKY 132

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           TF F +KA   V +L+  Q LHG  ++S     V V+ +L+  Y + G +++A  VF  +
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
            E+D+VSWNS+I+ + Q     +AL+L+++M  EDV     T+V +LS+CA +  L  G 
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV-- 268
            +     E     ++ + NA++DMY KCG+++ A  +F  M ++D ++W +M+ GY +  
Sbjct: 253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312

Query: 269 -----------------------------HGRGDEAISFFKQM-LMAGFHPDSITFLGLL 298
                                        +G+ +EA+  F ++ L      + IT +  L
Sbjct: 313 DYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTL 372

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C+  G +E G  + H  + ++ ++        L+ +Y + G LEK+ EV N+    D 
Sbjct: 373 SACAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDV 431

Query: 359 VLWRTLLGSCKIH 371
            +W  ++G   +H
Sbjct: 432 FVWSAMIGGLAMH 444



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 149/291 (51%), Gaps = 6/291 (2%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNL--MRGYAANGVIEAARSVFDNMPERDLVS 157
           ER  +L + ++ HG +IR+G       ++ L  M   ++   +E AR VFD +P+ +  +
Sbjct: 38  ERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFA 97

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           WN++I  Y      + ++  +  M  E     + +T   L+ + A V +L++G  LH +A
Sbjct: 98  WNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMA 157

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            +      V+V N+L+  Y  CG+LDSA  VF+ ++++DV+SWNSMI G+   G  D+A+
Sbjct: 158 VKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 217

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF-HMMVSRYNLKPGIKHYGCLVD 335
             FK+M         +T +G+L  C+    +E G +   ++  +R N+   + +   ++D
Sbjct: 218 ELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLAN--AMLD 275

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           +Y + G +E A  + +     D V W T+L    I  + E     + ++ Q
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 118/247 (47%), Gaps = 4/247 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           +L+ YAIS       A+ + N +      AWN+LI A+ Q+  P +A+  ++ + +    
Sbjct: 304 MLDGYAIS--EDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           + +  T   TL AC +V AL   + +H ++ + G      V++ L+  Y+  G +E +R 
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE 421

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF+++ +RD+  W+++I          EA+ ++ +M+  +V  +G T   +  +C+H G 
Sbjct: 422 VFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGL 481

Query: 206 LNMGIFL-HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSMI 263
           ++    L H++    G V        +VD+  + G L+ A      M      S W +++
Sbjct: 482 VDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 541

Query: 264 VGYGVHG 270
               +H 
Sbjct: 542 GACKIHA 548


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 193/524 (36%), Positives = 304/524 (58%), Gaps = 34/524 (6%)

Query: 49  QNPQTQ----AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
           +NPQ+      +N+LI  +  +     A + +  M    +S  D+ T    +  C   + 
Sbjct: 113 ENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSV-DSVTMLGLVPLCTVPEY 171

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L   + LHG  ++ G +  V V  + +  Y   G +EA R +FD MP + L++WN++IS 
Sbjct: 172 LWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISG 231

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
           Y+Q     + L+LYE+M+   V  D FTLV +LSSCAH+GA  +G  + ++    GFV +
Sbjct: 232 YSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPN 291

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           V+V NA + MYA+CGNL  A  VF  M  + ++SW +MI  YG+HG G+  +  F  M+ 
Sbjct: 292 VFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIK 351

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            G  PD   F+ +L  CSH GL ++G+E F  M   Y L+PG +HY CLVDL GRAG+L+
Sbjct: 352 RGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLD 411

Query: 345 KALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
           +A+E I  S P +P   +W  LLG+CKIH+NV++ E+A   +++ E  + G YVL++ IY
Sbjct: 412 EAMEFIE-SMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIY 470

Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
           + +K++EG+ R R +++    +  PG+S++E   +VH F+  D+SH   + ++R L+E+ 
Sbjct: 471 SDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDEL- 529

Query: 463 HRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY---HSEKLAIAFGLATTPDGTSLRIVKN 519
                     + S++ ++G+   D  E+ S+    HSE+LAIAFG+  +  GT + ++KN
Sbjct: 530 ----------ETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKN 579

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    R  +VRD  R+H+F+DG+CSC DYW
Sbjct: 580 LRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 180/380 (47%), Gaps = 8/380 (2%)

Query: 53  TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
           +  WN  +R  A      ++I  Y  ML +  S PD F+F F LK+C  +      Q+LH
Sbjct: 18  STPWNVRLRELAYQSLFSESISLYRSMLRSG-SSPDAFSFPFILKSCASLSLPVSGQQLH 76

Query: 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS--WNSIISCYTQASF 170
             V + G E    V T L+  Y   G++  AR VF+  P+   +S  +N++IS YT  S 
Sbjct: 77  CHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSK 136

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
             +A  ++ RM+   V +D  T++ L+  C     L +G  LH    + G    V V N+
Sbjct: 137 VTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNS 196

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
            + MY KCG++++   +F  M  + +++WN++I GY  +G   + +  ++QM  +G  PD
Sbjct: 197 FITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPD 256

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
             T + +L  C+H G  + G E   ++ S     P +      + +Y R G L KA  V 
Sbjct: 257 PFTLVSVLSSCAHLGAKKIGHEVGKLVESN-GFVPNVFVSNASISMYARCGNLAKARAVF 315

Query: 351 NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD--- 407
           +       V W  ++G   +H   EIG +   ++++      G  V +  + AC+     
Sbjct: 316 DIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGA-VFVMVLSACSHSGLT 374

Query: 408 EEGVARTRKLIKSNGIKTTP 427
           ++G+   R + +   ++  P
Sbjct: 375 DKGLELFRAMKREYKLEPGP 394


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 218/568 (38%), Positives = 311/568 (54%), Gaps = 54/568 (9%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ---SLSPLQAIFYYNHMLMASLSRPDTFT 91
           S  L  A ++F++I NP +  +NS+IRA+ +          +  Y  M    L   D FT
Sbjct: 125 SGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGL-LGDNFT 183

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
             F LK+C  +  +   + +HG  +R G E    V  +L+  Y   GVI  AR +FD M 
Sbjct: 184 LPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMI 243

Query: 152 ERDLVSWNSII-------------------------------SCYTQASFHLEALKLYER 180
            RD+ SWN++I                               S YTQ  F  +AL L++ 
Sbjct: 244 VRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDE 303

Query: 181 MRFE--DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
           M  +  ++  +  T+V +L +CA   AL  G  +H  A  +G   +  V  AL  MYAKC
Sbjct: 304 MLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKC 363

Query: 239 GNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
            +L  A C F  + +  +++++WN+MI  Y  HG G EA+S F+ ML AG  PD++TF+G
Sbjct: 364 YSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMG 423

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSP 355
           LL GCSH GL++ G+ +F+ M + ++++P ++HY C+VDL GRAG+L +A E+I+     
Sbjct: 424 LLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQ 483

Query: 356 SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415
           + P +W  LL +C+ HRN+EI E+A + L  LE  ++G+YVLL+ +YA     E V + R
Sbjct: 484 AGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLR 543

Query: 416 KLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES 475
            L+K  G+K +PG SWIEI  + H F+  DKSHP A  IY+ LE +  + K  GY  D S
Sbjct: 544 ALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTS 603

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
            V    S  E   E +   HSEKLAIAFGL  T  G  LR+ KNLR            S 
Sbjct: 604 FVLHDISEEEK--EYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISK 661

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            Y R++IVRD  R+H F+DG CSCGDYW
Sbjct: 662 IYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 111/221 (50%), Gaps = 8/221 (3%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ- 167
           Q+ H  ++  G +    ++  ++  YA++G +++A  VFD +     + +NSII  YT+ 
Sbjct: 97  QQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRH 156

Query: 168 --ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV 225
                    L+ Y RM F  +  D FTL  +L SCA +  + MG  +H     +G     
Sbjct: 157 GXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDF 216

Query: 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
           YVG +L+DMY KCG +  A  +F +M  RD+ SWN++I GY   G    A   F++M   
Sbjct: 217 YVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERME-- 274

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYF-HMMVSRYNLKP 325
             H + +++  ++ G +  G  E+ +  F  M+     +KP
Sbjct: 275 --HRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKP 313



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 4/150 (2%)

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG---RGDEAI 276
           G   + ++   +V MYA  G+LDSA  VF R+     L +NS+I  Y  HG        +
Sbjct: 107 GLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXL 166

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             + +M   G   D+ T   +L  C+    V  G    H    R  L+        L+D+
Sbjct: 167 EAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMG-RCVHGQGLRVGLEGDFYVGASLIDM 225

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           Y + G +  A ++ +     D   W  L+ 
Sbjct: 226 YVKCGVIGDARKLFDKMIVRDMASWNALIA 255


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 203/534 (38%), Positives = 302/534 (56%), Gaps = 22/534 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+ YA+ +F++ +      WN+L RA   +    + +  Y  M    +   D FT+T+ L
Sbjct: 127 SVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE-SDRFTYTYVL 185

Query: 97  KACERVKA----LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
           KAC   +     L K +E+H  + R GY   V + T L+  YA  G ++ A  VF+ MP 
Sbjct: 186 KACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPV 245

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFE--DVGLDGFTLVCLLSSCAHVGALNMGI 210
           R++VSW+++I+CY +     EAL+ +  M  E  D   +  T+V +L +CA + AL  G 
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGR 305

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H      G    + V +ALV MY +CG LD    VF RM  RDV+SWNS+I  YGVHG
Sbjct: 306 LIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHG 365

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
            G +AI  F++ML  G  P  +TF+ +L  CSH+GLVEEG   F  M   + +KP ++HY
Sbjct: 366 YGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHY 425

Query: 331 GCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
            C+VDL GRA +L++A +++ +  +   P +W +LLGSC+IH NVE+ E A + L  LE 
Sbjct: 426 ACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEP 485

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
            +AG+YVLLA IYA  +  + V R +KL++  G++  PG  W+E+  +++ FV  D+ +P
Sbjct: 486 KNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNP 545

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
             + I+  L ++    K  GY      V     + E   E+    HSEKLA+AFGL  T 
Sbjct: 546 LMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEK--ERIVLGHSEKLALAFGLINTS 603

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            G  +RI KNLR            S    ++++VRD  R+H F++G+CSCGDYW
Sbjct: 604 KGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 178/381 (46%), Gaps = 24/381 (6%)

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
           N LI++  +     QA+      +++  S P   T+   +  C    +L+    +H  ++
Sbjct: 50  NQLIQSLCKEGKLKQAL-----RVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHIL 104

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
            +G ++   ++T L+  Y+  G ++ AR VFD   +R +  WN++    T A    E L 
Sbjct: 105 DNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLG 164

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCA----HVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           LY +M    V  D FT   +L +C         L  G  +H      G+   VY+   LV
Sbjct: 165 LYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLV 224

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML--MAGFHPD 290
           DMYA+ G +D A  VF+ M  R+V+SW++MI  Y  +G+  EA+  F++M+       P+
Sbjct: 225 DMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPN 284

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
           S+T + +L  C+    +E+G    H  + R  L   +     LV +YGR GKL+    V 
Sbjct: 285 SVTMVSVLQACASLAALEQG-RLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVF 343

Query: 351 NTSSPSDPVLWRTLLGSCKIH----RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
           +     D V W +L+ S  +H    + ++I E  + N      AS      ++ + AC+ 
Sbjct: 344 DRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLAN-----GASPTPVTFVSVLGACSH 398

Query: 407 D---EEGVARTRKLIKSNGIK 424
           +   EEG      + + +GIK
Sbjct: 399 EGLVEEGKRLFESMWRDHGIK 419


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 198/544 (36%), Positives = 306/544 (56%), Gaps = 38/544 (6%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+ I   + + WN++I  +A++    +A+  +  M+  +   P+T T    + AC   +
Sbjct: 355 VFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCE 414

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           A +  + +HG+ ++ G++    V   LM  Y+  G ++ + ++FD+M  RD VSWN++I+
Sbjct: 415 AFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMIT 474

Query: 164 CYTQASFHLEALKL-YERMRFEDVGL----------------DGFTLVCLLSSCAHVGAL 206
            Y  +  +  AL L +E  R E+                   +  TL+ +L  CA + A+
Sbjct: 475 GYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAI 534

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
             G  +H  A        + VG+ALVDMYAKCG L+ +  VF+ M  ++V++WN +I+  
Sbjct: 535 AKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMAC 594

Query: 267 GVHGRGDEAISFFKQMLMAG-----FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           G+HG+G+EA+  FK M+          P+ +TF+ +   CSH GL+ EG+  F+ M   +
Sbjct: 595 GMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDH 654

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPV-LWRTLLGSCKIHRNVEIGEI 379
            ++P   HY C+VDL GRAG+LE+A E++NT     D V  W +LLG+C+IH+NVE+GE+
Sbjct: 655 GVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEV 714

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
           A KNL+ LE   A  YVLL+ IY+           RK ++  G+K  PG SWIE  ++VH
Sbjct: 715 AAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVH 774

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
           KF+  D SHP ++ ++  LE +  + +  GY  D S V    +  ED  E     HSEKL
Sbjct: 775 KFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVL--HNVDEDEKENLLCGHSEKL 832

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           AIAFG+  TP GT++R+ KNLR            S    R++IVRD  R+HHF++G CSC
Sbjct: 833 AIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSC 892

Query: 548 GDYW 551
           GDYW
Sbjct: 893 GDYW 896



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 185/376 (49%), Gaps = 27/376 (7%)

Query: 11  GLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLL----------------FNQIQNPQTQ 54
           GL   +   +IH   +   Y    SSS++ A  L                F++I +    
Sbjct: 104 GLQDLKTGEQIHAAAVKFGYG---SSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQV 160

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKC---QEL 111
           +WNS I A  +     QA+  +  M M ++    +FT      AC  +  ++     ++L
Sbjct: 161 SWNSFIAALCRFEKWEQALEAFRAMQMENMEL-SSFTLVSVALACSNLGVMHGLRLGKQL 219

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           HG+ +R G ++    +  LM  YA  G ++ ++++F++  +RD+VSWN++IS ++Q+   
Sbjct: 220 HGYSLRVGDQK-TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRF 278

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR-IACEMGFVESVYVGNA 230
            EAL  +  M  E V LDG T+  +L +C+H+  L++G  +H  +      +E+ +VG+A
Sbjct: 279 SEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSA 338

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHP 289
           LVDMY  C  ++S   VF  +  R +  WN+MI GY  +G  ++A+  F +M+ +AG  P
Sbjct: 339 LVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLP 398

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           ++ T   ++  C H        E  H    +   K        L+D+Y R GK++ +  +
Sbjct: 399 NTTTMASVMPACVHCEAFSNK-ESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETI 457

Query: 350 INTSSPSDPVLWRTLL 365
            ++    D V W T++
Sbjct: 458 FDSMEVRDRVSWNTMI 473



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 197/414 (47%), Gaps = 32/414 (7%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           ++ LF    +    +WN++I +F+QS    +A+ ++  M++  +   D  T    L AC 
Sbjct: 250 SKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVEL-DGVTIASVLPACS 308

Query: 101 RVKALNKCQELHGFVIRSG--YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
            ++ L+  +E+H +V+R+    E   V S  L+  Y     +E+ R VFD++  R +  W
Sbjct: 309 HLERLDVGKEIHAYVLRNNDLIENSFVGSA-LVDMYCNCRQVESGRRVFDHILGRRIELW 367

Query: 159 NSIISCYTQASFHLEALKLY-ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           N++IS Y +     +AL L+ E ++   +  +  T+  ++ +C H  A +    +H  A 
Sbjct: 368 NAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAV 427

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           ++GF E  YV NAL+DMY++ G +D +  +F  M  RD +SWN+MI GY + GR   A+ 
Sbjct: 428 KLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALV 487

Query: 278 FFKQMLM-----------------AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
              +M                     + P++IT + +L GC+    + +G E  H    R
Sbjct: 488 LLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKE-IHAYAIR 546

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIA 380
             L   I     LVD+Y + G L  +  V N     + + W  L+ +C +H   E     
Sbjct: 547 NMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALEL 606

Query: 381 MKNLVQLEAASAGDY----VLLATIY-ACTKD---EEGVARTRKLIKSNGIKTT 426
            KN+V  EA   G+     V   T++ AC+      EG+    ++   +G++ T
Sbjct: 607 FKNMVA-EAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPT 659



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 157/317 (49%), Gaps = 6/317 (1%)

Query: 53  TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
           T +W   +R+  +S    +AI  Y  M ++  +RPD F F   LKA   ++ L   +++H
Sbjct: 57  TASWVDALRSRTRSNDFREAISTYIEMTVSG-ARPDNFAFPAVLKAVSGLQDLKTGEQIH 115

Query: 113 GFVIRSGY-ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
              ++ GY    V V+  L+  Y   G I     VFD + +RD VSWNS I+   +    
Sbjct: 116 AAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKW 175

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG---ALNMGIFLHRIACEMGFVESVYVG 228
            +AL+ +  M+ E++ L  FTLV +  +C+++G    L +G  LH  +  +G  +  +  
Sbjct: 176 EQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTN 234

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           NAL+ MYAK G +D +  +F     RD++SWN+MI  +    R  EA++FF+ M++ G  
Sbjct: 235 NALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVE 294

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
            D +T   +L  CSH   ++ G E    ++   +L         LVD+Y    ++E    
Sbjct: 295 LDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRR 354

Query: 349 VINTSSPSDPVLWRTLL 365
           V +        LW  ++
Sbjct: 355 VFDHILGRRIELWNAMI 371



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           P R   SW   +   T+++   EA+  Y  M       D F    +L + + +  L  G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 211 FLHRIACEMGF-VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
            +H  A + G+   SV V N LV+MY KCG +     VF R+  RD +SWNS I      
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
            + ++A+  F+ M M      S T + +   CS+ G++  G+      +  Y+L+ G + 
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVM-HGLR-LGKQLHGYSLRVGDQK 230

Query: 330 Y---GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
                 L+ +Y + G+++ +  +  +    D V W T++ S
Sbjct: 231 TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISS 271


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 194/512 (37%), Positives = 308/512 (60%), Gaps = 23/512 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
            W ++I  F Q+ +  +A+  +  M    + RP+ FT++  L      K  +   +LH  
Sbjct: 375 TWTAMIGGFVQNNNNEKAVDLFCQMSREGV-RPNHFTYSTVLAG----KPSSLLSQLHAQ 429

Query: 115 VIRSGYERCVVVSTNLMRGYAANG-VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
           +I++ YE+   V+T L+  Y   G V+E+AR VF ++P +D+V+W+++++   Q     +
Sbjct: 430 IIKAYYEKVPSVATALLDAYVKTGNVVESAR-VFYSIPAKDIVAWSAMLTGLAQTRDSEK 488

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALV 232
           A++++ ++  E V  + +T   ++++C+   A +  G  +H  A + G   ++ V +AL+
Sbjct: 489 AMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALL 548

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
            MY+K GN++SA  VF+R  +RD++SWNSMI GYG HG   +A+  F+ M   G   D +
Sbjct: 549 TMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDV 608

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TF+G+L  C+H GLVEEG +YF++M+  Y++   I+HY C+VDLY RAG  +KA+++IN 
Sbjct: 609 TFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIING 668

Query: 353 SS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
              P+ P +WRTLL +C++HRN+E+G++A + LV L+   A  YVLL+ I+A   + E  
Sbjct: 669 MPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEK 728

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
           A  RKL+    +K   G SWIEI N++  F+  D SHP +D++Y KLEE+  + K +GY 
Sbjct: 729 AHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQ 788

Query: 472 KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
            D + V       E+  E   + HSE+LAIA+GL   P G  ++I KNLR          
Sbjct: 789 PDTNYVF--HDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIE 846

Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             S+   R LIVRD  R+HHF+ G+CSCG YW
Sbjct: 847 LISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 161/356 (45%), Gaps = 25/356 (7%)

Query: 32  ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT 91
           IS+ S   YA  LF++        +N L+  F+++    +A+  +  +  + L   D  T
Sbjct: 48  ISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLG-VDGLT 106

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
            +  LK C  +      +++H   ++SG+   V V T+L+  Y      E  R +FD M 
Sbjct: 107 LSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMG 166

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
            +++VSW S++S Y +   + E + L  +M+ E V  +GFT   +L + A    +  G+ 
Sbjct: 167 IKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQ 226

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H +  + GF  + +V NAL+ MY K   +  A  VF  M  RD ++WN MI GY   G 
Sbjct: 227 VHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGF 286

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ-----------GLVEEGVEYFHMMVSR 320
             E    F +M +AG       F   L  CS Q           G+V+ G E+   + + 
Sbjct: 287 YLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT- 345

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVE 375
                       L+  Y +   +++A ++ + +  + + V W  ++G    + N E
Sbjct: 346 -----------ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNE 390


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 202/590 (34%), Positives = 320/590 (54%), Gaps = 73/590 (12%)

Query: 33   SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ--SLSPLQAIFY--------------- 75
            S +  L  A+ +F+ ++N  T +WNS+I ++A    L+   ++FY               
Sbjct: 821  SKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWN 880

Query: 76   ----------YNHMLMASLSR-------PDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
                      Y   ++  L R       P++ + T  L+A   +  LN  +E HG+V+R+
Sbjct: 881  CLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRN 940

Query: 119  GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
            G++  V V T+L+  Y  N  + +A++VFDNM  R++ +WNS++S Y+      +AL+L 
Sbjct: 941  GFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLL 1000

Query: 179  ERMRFEDVGLDGFT------------------------LVCLLSSCAHVGALNMGIFLHR 214
             +M  E +  D  T                        + CLL +CA +  L  G  +H 
Sbjct: 1001 NQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHC 1060

Query: 215  IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            ++   GF+E V+V  AL+DMY+K  +L +A  VF R++ + + SWN MI+G+ + G G E
Sbjct: 1061 LSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKE 1120

Query: 275  AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
            AIS F +M   G  PD+ITF  LL  C + GL+ EG +YF  M++ Y + P ++HY C+V
Sbjct: 1121 AISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMV 1180

Query: 335  DLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
            DL GRAG L++A ++I+T     D  +W  LLGSC+IH+N+   E A KNL +LE  ++ 
Sbjct: 1181 DLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSA 1240

Query: 394  DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            +Y+L+  +Y+     E +   R+L+ + G++    WSWI+I  +VH F  D+K HPDA  
Sbjct: 1241 NYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGK 1300

Query: 454  IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
            IY +L +++   K +GY  D + V  +    E   +K    H+EKLAI +GL     G  
Sbjct: 1301 IYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEK--QKILLSHTEKLAITYGLIKMKAGEP 1358

Query: 514  LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +R++KN R            S+  +R+L +RD VR+HHFR+G CSC D+W
Sbjct: 1359 IRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 167/371 (45%), Gaps = 61/371 (16%)

Query: 38   LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
            L  A  +F+++ NP+   WN  I    QS    + +  +  M  + L + +T T    L+
Sbjct: 725  LEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFL-KAETATIVRVLQ 783

Query: 98   ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            AC ++ ALN  +++HG+V R G +  V +   L+  Y+ NG +E AR VFD+M  R+  S
Sbjct: 784  ACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSS 843

Query: 158  WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS------------------- 198
            WNS+IS Y    F  +A  L+  +   D+  D  T  CLLS                   
Sbjct: 844  WNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ 903

Query: 199  ----------------SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
                            + + +G LNMG   H      GF   VYVG +L+DMY K  +L 
Sbjct: 904  GEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLX 963

Query: 243  SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG-- 300
            SA  VF  M+ R++ +WNS++ GY   G  ++A+    QM   G  PD +T+ G++ G  
Sbjct: 964  SAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYA 1023

Query: 301  ----------------------CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
                                  C+   L+++G E  H +  R      +     L+D+Y 
Sbjct: 1024 MWGCARKAFMPNSASITCLLRACASLSLLQKGKE-IHCLSIRNGFIEDVFVATALIDMYS 1082

Query: 339  RAGKLEKALEV 349
            ++  L+ A +V
Sbjct: 1083 KSSSLKNAHKV 1093



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 121/262 (46%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WNS +  F  S   L  +      L       D+  ++  LK C RV  +    E+HG +
Sbjct: 641 WNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCL 700

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
           I+ G++  V +   LM  Y     +E A  VF  MP  + + WN  I    Q+    + +
Sbjct: 701 IKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGV 760

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           +L+ +M+F  +  +  T+V +L +C  +GALN    +H      G    V + N L+ MY
Sbjct: 761 ELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMY 820

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           +K G L+ A  VF  M  R+  SWNSMI  Y   G  ++A S F ++  +   PD +T+ 
Sbjct: 821 SKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWN 880

Query: 296 GLLCGCSHQGLVEEGVEYFHMM 317
            LL G    G  EE +     M
Sbjct: 881 CLLSGHFLHGYKEEVLNILQRM 902



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 4/243 (1%)

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCY--TQASFHLEALKLYERMRFE 184
           + NL+  Y   G   +A  VF     R+ + WNS +  +  +  S H+  L++++ +  +
Sbjct: 610 AKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHI-VLEVFKELHGK 668

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            V  D       L +C  V  + +G+ +H    + GF   VY+  AL++ Y +C  L+ A
Sbjct: 669 GVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKA 728

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             VF  M   + L WN  I+      +  + +  F++M  +    ++ T + +L  C   
Sbjct: 729 NQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKM 788

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364
           G +    +  H  V R+ L   +     L+ +Y + GKLE A  V ++    +   W ++
Sbjct: 789 GALN-AAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSM 847

Query: 365 LGS 367
           + S
Sbjct: 848 ISS 850


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/526 (37%), Positives = 301/526 (57%), Gaps = 21/526 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+++F+ +    + +WN++I  +AQ+    +A+  +N M+   +   D       L+AC 
Sbjct: 215 ARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLA-ALQACG 273

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +  L++   +H  ++R G +  V V   L+  Y+    ++ A  VFD +  R  VSWN+
Sbjct: 274 ELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNA 333

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I    Q     +A++L+ RM+ E+V  D FTLV ++ + A +       ++H  +  + 
Sbjct: 334 MILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLH 393

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
             + VYV  AL+DMYAKCG ++ A  +F+  R+R V++WN+MI GYG HG G  A+  F+
Sbjct: 394 LDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFE 453

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M   G  P+  TFL +L  CSH GLV+EG EYF  M   Y L+PG++HYG +VDL GRA
Sbjct: 454 EMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRA 513

Query: 341 GKLEKALEVINTSSPSDPVL--WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           GKL++A   I    P DP L  +  +LG+CK+H+NVE+ E + + + +L       +VLL
Sbjct: 514 GKLDEAWAFIQ-KMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLL 572

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           A IYA     + VAR R  ++ NG++ TPGWS I++ N++H F     +H  A  IY +L
Sbjct: 573 ANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRL 632

Query: 459 EEIMHRAKFIGYTKD-ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
            +++   K +GY  D +S+  V        L      HSEKLAIAFGL  T  GT+++I 
Sbjct: 633 AKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNT----HSEKLAIAFGLIRTAPGTTIQIK 688

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S+   R++I+RD  R+HHF+DG CSCGDYW
Sbjct: 689 KNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 171/327 (52%), Gaps = 5/327 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+++      AWN+L+  +A++     A+     M      RPD+ T    L AC 
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACA 172

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             +AL  C+E H F IRSG E  V V+T ++  Y   G I AAR VFD MP ++ VSWN+
Sbjct: 173 NARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNA 232

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I  Y Q     EAL L+ RM  E V +   +++  L +C  +G L+ G+ +H +   +G
Sbjct: 233 MIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG 292

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              +V V NAL+ MY+KC  +D A  VF  + +R  +SWN+MI+G   +G  ++A+  F 
Sbjct: 293 LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFT 352

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE--YFHMMVSRYNLKPGIKHYGCLVDLYG 338
           +M +    PDS T + ++   +    + + ++  + H    R +L   +     L+D+Y 
Sbjct: 353 RMQLENVKPDSFTLVSVIPALAD---ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYA 409

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL 365
           + G++  A  + N++     + W  ++
Sbjct: 410 KCGRVNIARILFNSARERHVITWNAMI 436



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 153/325 (47%), Gaps = 4/325 (1%)

Query: 81  MASLSRPDTF-TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           M+S   P    TFT  LK C     L   + +H  +   G +   + +T L   YA    
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLS 198
              AR VFD MP RD V+WN++++ Y +      A+++  RM+ E+    D  TLV +L 
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLP 169

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +CA+  AL      H  A   G  E V V  A++D Y KCG++ +A  VF  M  ++ +S
Sbjct: 170 ACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVS 229

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WN+MI GY  +G   EA++ F +M+  G     ++ L  L  C   G ++EG+   H ++
Sbjct: 230 WNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMR-VHELL 288

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
            R  L   +     L+ +Y +  +++ A  V +       V W  ++  C  +   E   
Sbjct: 289 VRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSE-DA 347

Query: 379 IAMKNLVQLEAASAGDYVLLATIYA 403
           + +   +QLE      + L++ I A
Sbjct: 348 VRLFTRMQLENVKPDSFTLVSVIPA 372



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 5/215 (2%)

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           T   LL  CA  G L  G  +H      G         AL +MYAKC     A  VF RM
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEG 310
             RD ++WN+++ GY  +G    A+    +M    G  PDSIT + +L  C++   +   
Sbjct: 121 PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAAC 180

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI 370
            E  H    R  L+  +     ++D Y + G +  A  V +     + V W  ++     
Sbjct: 181 REA-HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDG--Y 237

Query: 371 HRNVEIGE-IAMKNLVQLEAASAGDYVLLATIYAC 404
            +N +  E +A+ N +  E     D  +LA + AC
Sbjct: 238 AQNGDSREALALFNRMVEEGVDVTDVSVLAALQAC 272


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 204/561 (36%), Positives = 301/561 (53%), Gaps = 61/561 (10%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S   A+ +FN +Q+  + +W  LI    Q     +++  +N M  A L   D F     +
Sbjct: 320 SFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQM-RAELMAIDQFALATLI 378

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
             C     L   ++LH   ++SG+ R +VVS +L+  YA  G ++ A  VF +M ERD+V
Sbjct: 379 SGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIV 438

Query: 157 SWNSIISCYTQASFHLEA-------------------------------LKLYERMRFE- 184
           SW S+I+ Y+Q    ++A                               LK+Y  M  + 
Sbjct: 439 SWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 498

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
           DV  D  T V L   CA +GA  +G  +     + G + +V V NA + MY+KCG +  A
Sbjct: 499 DVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEA 558

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             +F  +  +DV+SWN+MI GY  HG G +A   F  ML  G  PD I+++ +L GCSH 
Sbjct: 559 QKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHS 618

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWR 362
           GLV+EG  YF MM   + + PG++H+ C+VDL GRAG L +A ++I+   P  P   +W 
Sbjct: 619 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLID-KMPMKPTAEVWG 677

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
            LL +CKIH N E+ E+A K++ +L++  +G Y+LLA IY+     +  A+ RKL++  G
Sbjct: 678 ALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKG 737

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           IK  PG+SW+E+ N+VH F  DD SHP    I  KL+E+M +   +GY + ES       
Sbjct: 738 IKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYVRTES------- 790

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
                  +S  +HSEKLA+AFG+ + P    + I+KNLR            S    R+ +
Sbjct: 791 ------PRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFV 844

Query: 531 VRDRVRYHHFRDGLCSCGDYW 551
           +RD VR+HHF+ G CSCGDYW
Sbjct: 845 IRDGVRFHHFKSGSCSCGDYW 865



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 212/461 (45%), Gaps = 79/461 (17%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYN----------HMLMASLS-- 85
           + +A  LF+QI+ P     NS++  +A+      AI Y+           +M++A+LS  
Sbjct: 189 VDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQS 248

Query: 86  ------------------RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
                             R D+ T+T +L AC R+ +L   ++LH  VIRS  +    V+
Sbjct: 249 GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA 308

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           + L+  YA  G  + A+ VF+++ +R+ VSW  +I    Q     ++++L+ +MR E + 
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
           +D F L  L+S C +   L +G  LH +  + G   ++ V N+L+ +YAKCG+L +A  V
Sbjct: 369 IDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFV 428

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           FS M +RD++SW SMI  Y   G   +A  FF  M       ++IT+  +L      G  
Sbjct: 429 FSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTR----NAITWNAMLGAYIQHGAE 484

Query: 308 EEGVEYFHMMVSRYNLKPGIKHY-----GC------------------------------ 332
           E+G++ +  M+S+ ++ P    Y     GC                              
Sbjct: 485 EDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANA 544

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ-LEAAS 391
            + +Y + G++ +A ++ +  +  D V W  ++     H    +G+ A K     L   +
Sbjct: 545 AITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQH---GMGKQAAKTFDDMLSKGA 601

Query: 392 AGDYV-LLATIYACTKD---EEGVARTRKLIKSNGIKTTPG 428
             DY+  +A +  C+     +EG      + + +GI  +PG
Sbjct: 602 KPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGI--SPG 640



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 166/371 (44%), Gaps = 34/371 (9%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           ++N YA     SLS A+ LF+++      +WN+L+  + Q+   L  +  +  M  +  S
Sbjct: 77  MMNGYA--KQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDS 134

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGF-------------------VIRSGY------ 120
            P+ FTF   +K+C  +       +L G                     +R GY      
Sbjct: 135 LPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASR 194

Query: 121 -----ERCVVVSTN-LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
                ER  +   N ++ GYA    I+ A   F++M ERD+VSWN +I+  +Q+    EA
Sbjct: 195 LFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREA 254

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L L   M  + V LD  T    L++CA + +L  G  LH            YV +AL+++
Sbjct: 255 LGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIEL 314

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAKCG+   A  VF+ ++ R+ +SW  +I G   +    +++  F QM       D    
Sbjct: 315 YAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFAL 374

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
             L+ GC ++  +  G +  H +  +      I     L+ LY + G L+ A  V ++ S
Sbjct: 375 ATLISGCFNRMDLCLGRQ-LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS 433

Query: 355 PSDPVLWRTLL 365
             D V W +++
Sbjct: 434 ERDIVSWTSMI 444



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 134/318 (42%), Gaps = 38/318 (11%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           E  V+    +M GYA  G +  A  +FD MP RD+ SWN+++S Y QA   L+ L+ +  
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 181 M-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           M R  D   + FT  C++ SC  +G   +   L  +  +  F     V  ALVDM+ +CG
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCG 187

Query: 240 NLDSA------------FC-------------------VFSRMRKRDVLSWNSMIVGYGV 268
            +D A            FC                    F  M +RDV+SWN MI     
Sbjct: 188 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 247

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
            GR  EA+    +M   G   DS T+   L  C+    +  G +  H  V R    P I 
Sbjct: 248 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQ-LHAKVIRS--LPQID 304

Query: 329 HY--GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
            Y    L++LY + G  ++A  V N+    + V W  L+G   +        + + N ++
Sbjct: 305 PYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGG-SLQYECFSKSVELFNQMR 363

Query: 387 LEAASAGDYVLLATIYAC 404
            E  +   + L   I  C
Sbjct: 364 AELMAIDQFALATLISGC 381



 Score = 45.1 bits (105), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 34/183 (18%)

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC------------------ 238
           L SC   GAL     LH     +G   +V++ N L+  Y  C                  
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPN 70

Query: 239 --------------GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
                         G+L  A  +F RM +RDV SWN+++ GY    R  + +  F  M  
Sbjct: 71  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130

Query: 285 AGFH-PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
           +G   P++ TF  ++  C   G  E   +   +   +++          LVD++ R G +
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFW-KFDFWGDPDVETALVDMFVRCGYV 189

Query: 344 EKA 346
           + A
Sbjct: 190 DFA 192


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/533 (37%), Positives = 306/533 (57%), Gaps = 29/533 (5%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA-SLSRPDTFTFTFTLKAC 99
           A+  F++I +P      ++   + ++     ++  +  M+ + S S  D         A 
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV--IEAARSVFDNMPERDLVS 157
            RV        LH  + + G+ER   V   ++  YA  G   +E AR VFD M ERD+VS
Sbjct: 63  ARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVS 121

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRI 215
           WNS+I+ Y Q     EA+ LY +M     G+  +   L  +L +CAH GA+  G  +H  
Sbjct: 122 WNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQ 181

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
              MG  E+VYVG ++VDMY+KCG ++ A   F +++++++LSW++MI GYG+HGRG EA
Sbjct: 182 VVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEA 241

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F +M  +G  P+ ITF+ +L  CSH GL++EG  +++ M   + ++ G++HYGC+VD
Sbjct: 242 LEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVD 301

Query: 336 LYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           L GRAG L++A  +I       D  +W  LL +C+IH+NVE+ E+++K L +L+A+++G 
Sbjct: 302 LLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGY 361

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ IYA     + V R R L+K+  I+  PG+S  E+  +++ F V DKSHP    I
Sbjct: 362 YVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEI 421

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDF--LEKSSAY--HSEKLAIAFGLATTPD 510
           Y  LE+++ R +  GY  +      +GS   D    EK SA   HSEKLA+AF L  +  
Sbjct: 422 YSYLEKLLERMQEAGYVPN------TGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVP 475

Query: 511 GTSLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + + I+KNLR  +              R++I+RD  R+HHF+DGLCSC DYW
Sbjct: 476 RSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 200/520 (38%), Positives = 295/520 (56%), Gaps = 19/520 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F+++       W +LI  F+Q+  P  A+  +  ML     +P+ FT +  LK
Sbjct: 139 LDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGF-QPNHFTLSSLLK 197

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A      L+   +LH F ++ GY+  V V + L+  YA  G ++AA+  FD MP +  VS
Sbjct: 198 ASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS 257

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++IS + +      AL L  +M+ ++     FT   +LS+CA +GAL  G ++H    
Sbjct: 258 WNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMI 317

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G     ++GN L+DMYAK G++D A  VF R+ K DV+SWN+M+ G   HG G E + 
Sbjct: 318 KSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLD 377

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+QML  G  P+ I+FL +L  CSH GL++EG+ YF +M  +Y ++P + HY   VDL 
Sbjct: 378 RFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLL 436

Query: 338 GRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GR G L++A   I    P +P   +W  LLG+C++H+N+E+G  A +   +L+   +G  
Sbjct: 437 GRVGLLDRAERFIR-EMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPR 495

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           +LL+ IYA       VA+ RK++K +G+K  P  SW+EI N VH FV +D++HP    I 
Sbjct: 496 MLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIR 555

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
            K EEI  + K IGY  D S V +     E   E+   YHSEKLA+AF L  TP G+ +R
Sbjct: 556 GKWEEISGKIKEIGYVPDTSHVLLFVDQQE--REEKLQYHSEKLALAFALLNTPTGSPIR 613

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDG 543
           I KN+R            S    R++IVRD  R+H FRDG
Sbjct: 614 IKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDG 653



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 153/286 (53%), Gaps = 2/286 (0%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAARS 145
           PD   ++  LK C R+  + + + +H  ++ S + +  +V+   ++  YA  G ++ AR 
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD MP +D+V+W ++I+ ++Q +   +AL L+ +M       + FTL  LL +      
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHG 204

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L+ G  LH    + G+  SVYVG+ALVDMYA+CG++D+A   F  M  +  +SWN++I G
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISG 264

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           +   G G+ A+    +M    F P   T+  +L  C+  G +E+G ++ H  + +  LK 
Sbjct: 265 HARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQG-KWVHAHMIKSGLKL 323

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
                  L+D+Y +AG ++ A  V +     D V W T+L  C  H
Sbjct: 324 IAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 192/524 (36%), Positives = 308/524 (58%), Gaps = 16/524 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           ++ LF +++   + +W S+I  F Q+     AI  +  M + +L + D +TF   L AC 
Sbjct: 228 SKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENL-QMDQYTFGSVLTACG 286

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            V AL + +++H ++IR+ Y+  + V++ L+  Y     I++A +VF  M  +++VSW +
Sbjct: 287 GVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTA 346

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  Y Q  +  EA+K +  M+   +  D FTL  ++SSCA++ +L  G   H  A   G
Sbjct: 347 MLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSG 406

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            +  + V NALV +Y KCG+++ +  +F+ +  +D ++W +++ GY   G+ +E I  F+
Sbjct: 407 LISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFE 466

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            ML  G  PD +TF+G+L  CS  GLVE+G + F  M++ + + P   HY C++DL+ RA
Sbjct: 467 SMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRA 526

Query: 341 GKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G++E+A   IN    S D + W TLL SC+ + N++IG+ A + L++L+  +   YVLL+
Sbjct: 527 GRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLS 586

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
           ++YA     E VAR RK ++  G++  PG SWI+  NQVH F  DDKS+P +D IY +LE
Sbjct: 587 SVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELE 646

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           ++ ++    GY  D + V      SE    K   +HSEKLAIAFGL   P G  +R+VKN
Sbjct: 647 KLNYKMIKEGYVPDMNSVLHDVGDSEKI--KMLNHHSEKLAIAFGLLFIPPGLPIRVVKN 704

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S   +R+++VRD  R+H F+DG CSCGD+W
Sbjct: 705 LRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 175/360 (48%), Gaps = 33/360 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTL 96
           +S  + LF+ +      +WNSLI  +A      Q++  YN ML    S   +  TF+  L
Sbjct: 91  VSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLL 150

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---- 152
               +   +   +++HG V++ G+   V V + L+  Y+  G+I  AR VFD +PE    
Sbjct: 151 ILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVV 210

Query: 153 ---------------------------RDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
                                      RD +SW S+I+ +TQ     +A+ ++  M+ E+
Sbjct: 211 MYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLEN 270

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           + +D +T   +L++C  V AL  G  +H       + ++++V +ALVDMY KC N+ SA 
Sbjct: 271 LQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAE 330

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF +M  ++V+SW +M+VGYG +G  +EA+  F  M   G  PD  T   ++  C++  
Sbjct: 331 AVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLA 390

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +EEG + FH       L   I     LV LYG+ G +E +  + N  S  D V W  L+
Sbjct: 391 SLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALV 449



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 120/271 (44%), Gaps = 34/271 (12%)

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED-- 185
             ++  Y+  G +     +FD MP RD VSWNS+IS Y       +++K Y  M   D  
Sbjct: 79  NTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGS 138

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK-------- 237
             L+  T   LL   +  G + +G  +H    + GF+  V+VG+ LVDMY+K        
Sbjct: 139 FNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCAR 198

Query: 238 -----------------------CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                                  CG ++ +  +F  MR+RD +SW SMI G+  +G   +
Sbjct: 199 KVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRD 258

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           AI  F++M +     D  TF  +L  C     ++EG +  H  + R + K  I     LV
Sbjct: 259 AIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQ-VHAYIIRTDYKDNIFVASALV 317

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           D+Y +   ++ A  V    +  + V W  +L
Sbjct: 318 DMYCKCKNIKSAEAVFKKMTCKNVVSWTAML 348



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 7/179 (3%)

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
           + F L  L+SS A +G++    +  ++  +M    ++Y  N ++  Y+K G +     +F
Sbjct: 43  ETFLLNNLISSYAKLGSIP---YACKVFDQMPH-PNLYSWNTILSAYSKLGRVSEMEYLF 98

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM--AGFHPDSITFLGLLCGCSHQGL 306
             M +RD +SWNS+I GY   G   +++  +  ML     F+ + ITF  LL   S +G 
Sbjct: 99  DAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGC 158

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           V+ G +  H  V ++     +     LVD+Y + G +  A +V +     + V++ TL+
Sbjct: 159 VKLGRQ-IHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLI 216



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  +  LFN+I       W +L+  +AQ     + I  +  ML   L +PD  TF   L
Sbjct: 426 SIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGL-KPDKVTFIGVL 484

Query: 97  KACERVKALNKCQEL-------HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
            AC R   + K  ++       HG V    +  C++        ++  G IE AR+  + 
Sbjct: 485 SACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMI------DLFSRAGRIEEARNFINK 538

Query: 150 MP-ERDLVSWNSIIS 163
           MP   D +SW +++S
Sbjct: 539 MPFSPDAISWATLLS 553


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/526 (37%), Positives = 308/526 (58%), Gaps = 25/526 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ A  LF+Q+      +W ++I A+++     +A+     ML   + RP+ +T++  L+
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGV-RPNVYTYSSVLR 122

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC     ++  + LH  +I+ G E  V V + L+  +A  G  E A SVFD M   D + 
Sbjct: 123 AC---NGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIV 179

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNSII  + Q S    AL+L++RM+      +  TL  +L +C  +  L +G+  H    
Sbjct: 180 WNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV 239

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +  + + + + NALVDMY KCG+L+ A  VF++M++RDV++W++MI G   +G   EA+ 
Sbjct: 240 K--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALK 297

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+ M  +G  P+ IT +G+L  CSH GL+E+G  YF  M   Y + PG +HYGC++DL 
Sbjct: 298 LFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLL 357

Query: 338 GRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           G+AGKL+ A++++N      D V WRTLLG+C++ RN+ + E A K ++ L+   AG Y 
Sbjct: 358 GKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYT 417

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           +L+ IYA ++  + V   RK ++  GIK  PG SWIE+  Q+H F++ D+SHP    + +
Sbjct: 418 VLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNK 477

Query: 457 KLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           KL +++HR   IGY  + + V   + G   ED L     +HSEKLA+AFGL T P    +
Sbjct: 478 KLNQLIHRLIGIGYVPETNFVLQDLEGEQMEDSLR----HHSEKLALAFGLMTLPSEKVI 533

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           RI KNLR            S   +R++++RD +RYHHF+DG CSCG
Sbjct: 534 RIRKNLRICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSCG 579



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 146/278 (52%), Gaps = 6/278 (2%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D+ T++  +K C   +A+++   +   +  +G++  + +   L+  Y    ++  A  +F
Sbjct: 12  DSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLF 71

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D MP+R+++SW ++IS Y++   H +AL+L   M  + V  + +T   +L +C  +  + 
Sbjct: 72  DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDVR 131

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           M   LH    + G    VYV +AL+D++AK G  + A  VF  M   D + WNS+I G+ 
Sbjct: 132 M---LHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFA 188

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            + R D A+  FK+M  AGF  +  T   +L  C+   L+E G++  H+ + +Y+    +
Sbjct: 189 QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQA-HVHIVKYDQDLIL 247

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +   LVD+Y + G LE A  V N     D + W T++
Sbjct: 248 NN--ALVDMYCKCGSLEDARRVFNQMKERDVITWSTMI 283


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 203/561 (36%), Positives = 301/561 (53%), Gaps = 61/561 (10%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S   A+ +FN +Q+  + +W  LI    Q     +++  +N M  A L   D F     +
Sbjct: 310 SFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQM-RAELMAIDQFALATLI 368

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
             C     L   ++LH   ++SG+ R +VVS +L+  YA  G ++ A  VF +M ERD+V
Sbjct: 369 SGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIV 428

Query: 157 SWNSIISCYTQASFHLEA-------------------------------LKLYERMRFE- 184
           SW S+I+ Y+Q    ++A                               LK+Y  M  + 
Sbjct: 429 SWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 488

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
           DV  D  T V L   CA +GA  +G  +     + G + +V V NA + MY+KCG +  A
Sbjct: 489 DVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEA 548

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             +F  +  +DV+SWN+MI GY  HG G +A   F  ML  G  PD I+++ +L GCSH 
Sbjct: 549 QKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHS 608

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWR 362
           GLV+EG  YF MM   + + PG++H+ C+VDL GRAG L +A ++I+   P  P   +W 
Sbjct: 609 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLID-KMPMKPTAEVWG 667

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
            LL +CKIH N E+ E+A K++ +L++  +G Y+LLA IY+     +  A+ RKL++  G
Sbjct: 668 ALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKG 727

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           IK  PG+SW+E+ N+VH F  DD SHP    I  K++E+M +   +GY + ES       
Sbjct: 728 IKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTES------- 780

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
                  +S  +HSEKLA+AFG+ + P    + I+KNLR            S    R+ +
Sbjct: 781 ------PRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFV 834

Query: 531 VRDRVRYHHFRDGLCSCGDYW 551
           +RD VR+HHF+ G CSCGDYW
Sbjct: 835 IRDGVRFHHFKSGSCSCGDYW 855



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 212/461 (45%), Gaps = 79/461 (17%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYN----------HMLMASLS-- 85
           + +A  LF+QI+ P     NS++  +A+      AI Y+           +M++A+LS  
Sbjct: 179 VDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQS 238

Query: 86  ------------------RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
                             R D+ T+T +L AC R+ +L   ++LH  VIRS  +    V+
Sbjct: 239 GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA 298

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           + L+  YA  G  + A+ VF+++ +R+ VSW  +I    Q     ++++L+ +MR E + 
Sbjct: 299 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 358

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
           +D F L  L+S C +   L +G  LH +  + G   ++ V N+L+ +YAKCG+L +A  V
Sbjct: 359 IDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFV 418

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           FS M +RD++SW SMI  Y   G   +A  FF  M       ++IT+  +L      G  
Sbjct: 419 FSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAE 474

Query: 308 EEGVEYFHMMVSRYNLKPGIKHY-----GC------------------------------ 332
           E+G++ +  M+S+ ++ P    Y     GC                              
Sbjct: 475 EDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANA 534

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ-LEAAS 391
            + +Y + G++ +A ++ +  +  D V W  ++     H    +G+ A K     L   +
Sbjct: 535 AITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQH---GMGKQAAKTFDDMLSKGA 591

Query: 392 AGDYV-LLATIYACTKD---EEGVARTRKLIKSNGIKTTPG 428
             DY+  +A +  C+     +EG      + + +GI  +PG
Sbjct: 592 KPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGI--SPG 630



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 114/261 (43%), Gaps = 25/261 (9%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS----------- 169
           E  V+    +M GYA  G +  A  +FD MP RD+ SWN+++S  ++ +           
Sbjct: 84  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGC 143

Query: 170 --FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227
                + L L+ +  F         LV +   C +V       F  R+  ++    +++ 
Sbjct: 144 RELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVD------FASRLFSQIE-RPTIFC 196

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
            N+++  YAK   +D A   F  M +RDV+SWN MI      GR  EA+    +M   G 
Sbjct: 197 RNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV 256

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY--GCLVDLYGRAGKLEK 345
             DS T+   L  C+    +  G +  H  V R    P I  Y    L++LY + G  ++
Sbjct: 257 RLDSTTYTSSLTACARLFSLGWGKQ-LHAKVIRS--LPQIDPYVASALIELYAKCGSFKE 313

Query: 346 ALEVINTSSPSDPVLWRTLLG 366
           A  V N+    + V W  L+G
Sbjct: 314 AKRVFNSLQDRNSVSWTVLIG 334


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 194/542 (35%), Positives = 307/542 (56%), Gaps = 18/542 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA      +SY    F+ + +    +W +    +AQ+   LQA+     + M 
Sbjct: 299 GNTLIDMYA--KCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQME 356

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +    T   +  L AC  +  L K +E+HG+ IR G    V+ +T ++  Y   G+I+ 
Sbjct: 357 GMDVDATMIGSILL-ACRGLNCLGKIKEIHGYTIRGGLSDPVLQNT-IIDVYGECGIIDY 414

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  +F+++  +D+VSW S+ISCY       +AL+++  M+   +  D  TLV +LS+   
Sbjct: 415 AVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCS 474

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +  L  G  +H      GF+    + N LVDMYA+CG+++ A+ +F+  + R+++ W +M
Sbjct: 475 LSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAM 534

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I  YG+HG G+ A+  F +M      PD ITFL LL  CSH GLV EG  +  +M   Y 
Sbjct: 535 ISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQ 594

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           L+P  +HY CLVDL GR   LE+A +++ +  +   P +W  LLG+C+IH N EIGE+A 
Sbjct: 595 LEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAA 654

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           + L++L+  + G+YVL++ ++A     + V   R  +K +G+   PG SWIE+GN++H F
Sbjct: 655 EKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAF 714

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
           +  DK HP+ D IY+KL ++  + K  G    ++   +     E+ ++     HSE+LAI
Sbjct: 715 LSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYG-HSERLAI 773

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           A+GL  T +GT +R+ KNLR            S  + R+LIVRD  R+HHF+DG+CSCGD
Sbjct: 774 AYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSCGD 833

Query: 550 YW 551
           +W
Sbjct: 834 FW 835



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 155/324 (47%), Gaps = 3/324 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+++F+++       WN+++  +  +   L A+  Y  M    +S  D++TF   LKAC 
Sbjct: 11  AEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSF-DSYTFPVLLKACG 69

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER-DLVSWN 159
            V+ L    E+HG  I+ G +  V V  +L+  YA    I  AR +FD M  R D+VSWN
Sbjct: 70  IVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWN 129

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           SIIS Y+      EAL L+  M    V  + +T    L +C     + +G+ +H    + 
Sbjct: 130 SIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKS 189

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G V  VYV NALV MY + G +  A  +F  +  +D+++WNSM+ G+  +G   EA+ FF
Sbjct: 190 GRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFF 249

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
             +  A   PD ++ + ++      G +  G E  H    +      I     L+D+Y +
Sbjct: 250 YDLQNADLKPDQVSIISIIVASGRLGYLLNGKE-IHAYAIKNGFDSNILVGNTLIDMYAK 308

Query: 340 AGKLEKALEVINTSSPSDPVLWRT 363
              +       +  +  D + W T
Sbjct: 309 CCCMSYGGRAFDLMAHKDLISWTT 332



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 197/396 (49%), Gaps = 20/396 (5%)

Query: 20  EIHG---EWLLNSYAISVSS---------SLSYAQLLFNQIQ-NPQTQAWNSLIRAFAQS 66
           EIHG   ++  +S+   V+S          ++ A+ LF+++       +WNS+I A++ +
Sbjct: 79  EIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGN 138

Query: 67  LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV 126
               +A+  ++ ML A +   +T+TF   L+ACE    +    ++H  +++SG    V V
Sbjct: 139 GMCTEALCLFSEMLKAGVV-TNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYV 197

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
           +  L+  Y   G +  A  +F N+  +D+V+WNS+++ + Q   + EAL+ +  ++  D+
Sbjct: 198 ANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADL 257

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  +++ ++ +   +G L  G  +H  A + GF  ++ VGN L+DMYAKC  +     
Sbjct: 258 KPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGR 317

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
            F  M  +D++SW +   GY  +    +A+   +Q+ M G   D+     +L  C  +GL
Sbjct: 318 AFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLAC--RGL 375

Query: 307 VEEG-VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
              G ++  H    R  L   +     ++D+YG  G ++ A+ +  +    D V W +++
Sbjct: 376 NCLGKIKEIHGYTIRGGLSDPVLQ-NTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMI 434

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
            SC +H  +    + + + ++ E     DYV L +I
Sbjct: 435 -SCYVHNGLANKALEVFSSMK-ETGLEPDYVTLVSI 468



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 117/233 (50%), Gaps = 2/233 (0%)

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           Y   G +  A  +FD M ER + +WN+++  Y      L AL++Y  MR   V  D +T 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
             LL +C  V  L  G  +H +A + G    V+V N+LV +YAKC +++ A  +F RM  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 254 R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           R DV+SWNS+I  Y  +G   EA+  F +ML AG   ++ TF   L  C     ++ G++
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             H  + +      +     LV +Y R GK+ +A  +       D V W ++L
Sbjct: 182 -IHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSML 233



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 8/138 (5%)

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY KCG++  A  +F +M +R + +WN+M+ GY  +G    A+  +++M   G   DS T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 294 FLGLLCGCSHQGLVEE---GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
           F  LL  C   G+VE+   G E  H +  +Y     +     LV LY +   +  A ++ 
Sbjct: 61  FPVLLKAC---GIVEDLFCGAE-IHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLF 116

Query: 351 N-TSSPSDPVLWRTLLGS 367
           +     +D V W +++ +
Sbjct: 117 DRMYVRNDVVSWNSIISA 134


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 196/530 (36%), Positives = 307/530 (57%), Gaps = 19/530 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF++I      +WN++I  +AQS    +A+ ++  M  A ++ P+  T    L 
Sbjct: 210 LDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVT-PNVSTMLSVLS 268

Query: 98  ACERV-KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           AC +   +L     +  ++   G    + +   L+  Y   G +E A ++F+ + ++++V
Sbjct: 269 ACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVV 328

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN +I  YT  S + EAL L+ RM   ++  +  T + +L +CA++GAL++G ++H   
Sbjct: 329 SWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYV 388

Query: 217 CE--MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            +       +V +  +L+DMYAKCG+L  A  +F  M  + + +WN+MI G+ +HG  D 
Sbjct: 389 DKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDT 448

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F +M   GF PD ITF+G+L  C H GL+  G  YF  M+  Y + P + HYGC++
Sbjct: 449 ALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMI 508

Query: 335 DLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           DL+GRAG  ++A  ++ N     D  +W +LLG+C+IHR +E+ E   K+L +LE  +  
Sbjct: 509 DLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPS 568

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            YVLL+ IYA     E VA+ R  +  N +K  PG S IE+ + VH+F+V DK HP ++ 
Sbjct: 569 AYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNE 628

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           IY+ L+EI  R +  G+  D S V       E++ E   ++HSEKLAIAFGL +T  GT+
Sbjct: 629 IYKMLDEIDMRLEKAGFVPDTSEVLY--DMDEEWKEGVLSHHSEKLAIAFGLISTKPGTT 686

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +RI+KNLR            S  ++R++I RDR R+HHF+DG CSC DYW
Sbjct: 687 IRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 210/413 (50%), Gaps = 37/413 (8%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+   A+S    LSYA  LF  I+NP    WN +IR  + S SP  A+ YY HM+ +S +
Sbjct: 66  LIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMI-SSGT 124

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN-------- 137
            P+ +TF    K+C +++  ++ +++H  V++ G E    V T+L+  YA N        
Sbjct: 125 EPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARL 184

Query: 138 -----------------------GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
                                  G ++ AR +FD +P RD+VSWN++IS Y Q+    EA
Sbjct: 185 VFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEA 244

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVG-ALNMGIFLHRIACEMGFVESVYVGNALVD 233
           +  +E MR   V  +  T++ +LS+CA  G +L +G ++     + G   ++ + N L+D
Sbjct: 245 MAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLID 304

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY KCG+L+ A  +F +++ ++V+SWN MI GY       EA+  F++M+ +   P+ +T
Sbjct: 305 MYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVT 364

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSR--YNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
           FL +L  C++ G ++ G ++ H  V +   ++K  +  +  L+D+Y + G L  A  + +
Sbjct: 365 FLSILPACANLGALDLG-KWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFD 423

Query: 352 TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
             +      W  ++    +H + +   + + + +  E     D   +  + AC
Sbjct: 424 CMNTKSLATWNAMISGFAMHGHTDTA-LGLFSRMTSEGFVPDDITFVGVLTAC 475



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 130/305 (42%), Gaps = 33/305 (10%)

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR--GYAANGVIEAARSVFDNMPE 152
           +L      K L   +++H  +I++G        + L+     + +G +  A S+F  +  
Sbjct: 31  SLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRN 90

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
            + V WN +I   + +     AL+ Y  M       + +T   +  SC  +   + G  +
Sbjct: 91  PNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQV 150

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF--SRMRK----------------- 253
           H    ++G   + +V  +L++MYA+ G L +A  VF  S MR                  
Sbjct: 151 HAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFL 210

Query: 254 ------------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
                       RDV+SWN+MI GY   GR +EA++FF++M  A   P+  T L +L  C
Sbjct: 211 DEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSAC 270

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
           +  G   +   +    +    L   I+    L+D+Y + G LE+A  +       + V W
Sbjct: 271 AQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSW 330

Query: 362 RTLLG 366
             ++G
Sbjct: 331 NVMIG 335


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 213/612 (34%), Positives = 324/612 (52%), Gaps = 67/612 (10%)

Query: 4   KKHARYVGLNKARQAHEIHGEWLLNSY------------AISVSSSLSYAQLLFNQIQNP 51
           +  A   G   AR+A E+H   +                A + S  L  A  L  +  +P
Sbjct: 32  RAAALLAGCASARRASELHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALLRRTPDP 91

Query: 52  QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111
               + S I A +       A+   + ML++    P   T + +L AC     L   + L
Sbjct: 92  TAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPAC---GGLAVGRAL 148

Query: 112 HGFVIR---SGY-----------------------------ERCVVVSTNLMRGYAANGV 139
           HG+ ++   SG                              +  VV  T ++  YA  G+
Sbjct: 149 HGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGL 208

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           ++ ARS+FD +P +DL+ WN+++  YTQ     EAL+L+ RM    V  D  ++V  LS+
Sbjct: 209 LDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSA 268

Query: 200 CAHVGALNMGIFLHRIACEMGFVE---SVYVGNALVDMYAKCGNLDSAFCVFSRMR--KR 254
            A +G    G +LH             +  VG AL+DMY KCG+L+ A  VF  +    R
Sbjct: 269 VAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDR 328

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           D+++WN+M+ GY +HG   EA++ F Q+   G  P  ITF+G+L  CSH GLV+EG E F
Sbjct: 329 DIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELF 388

Query: 315 HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHR 372
             M   Y ++P ++HYGC+VDL GRAG++E+A E++   T +  D V+W +LL +C++H+
Sbjct: 389 RSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHK 448

Query: 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWI 432
           N+E+G+    +LV    A++G YVLL+ +YA   +   V R R +++++GI+  PG S +
Sbjct: 449 NMELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAV 508

Query: 433 EIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT-KDESLVAVSGSSSEDFLEKS 491
           E+G +V +FV  D+SHP A  IY KLEE+   A+  G+  + E ++           E++
Sbjct: 509 EVGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQA 568

Query: 492 SAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIA------------YSRDLIVRDRVRYHH 539
            A HSEKLA+AFGL +TP GT+++IVKNLR+ A              R ++ RDR R+HH
Sbjct: 569 LAVHSEKLALAFGLISTPPGTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHH 628

Query: 540 FRDGLCSCGDYW 551
           F DG C+CGDYW
Sbjct: 629 FVDGSCTCGDYW 640


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 196/549 (35%), Positives = 308/549 (56%), Gaps = 27/549 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPL-----QAIFYYN 77
           G  LL++YA      L  A  +F  + +P    +N++I  F Q  +       +A++ + 
Sbjct: 182 GTALLDTYA--KIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 78  HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
            M    + +P  FTF+  LKAC  ++A    +++H  + +   +    +   L+  Y+ +
Sbjct: 240 EMQSRGM-KPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLS 298

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G IE     F + P+ D+VSW S+I  + Q       L L+  + F     D FT+  +L
Sbjct: 299 GSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIML 358

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           S+CA++ A+  G  +H  A + G      + N+ + MYAKCG++DSA   F   +  D++
Sbjct: 359 SACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIV 418

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           SW+ MI     HG   EA+  F+ M  +G  P+ ITFLG+L  CSH GLVEEG+ YF +M
Sbjct: 419 SWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIM 478

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEI 376
              + + P +KH  C+VDL GRAG+L +A   ++++    DPV+WR+LL +C++H+  + 
Sbjct: 479 KKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDT 538

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
           G+   + +++LE  +A  YVLL  IY     +      R L+K  G+K  PG SWIE+GN
Sbjct: 539 GKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGN 598

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSS--AY 494
            VH FV  D+SHP++ +IY +LEE++   K + Y  DE LV+    +SE   + +S  +Y
Sbjct: 599 VVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI-DEKLVS---DASEPKHKDNSMVSY 654

Query: 495 HSEKLAIAFGLATTPDGTSLRIVKNLRSIAY------------SRDLIVRDRVRYHHFRD 542
           HSEKLA+ FG+ + P    +R++KNLRS  +            +R++I+RD +R+H FRD
Sbjct: 655 HSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRD 714

Query: 543 GLCSCGDYW 551
           G CSCGDYW
Sbjct: 715 GSCSCGDYW 723



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 156/318 (49%), Gaps = 9/318 (2%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WNSLI  + Q     + +  +    M+ L R D FTF+  L  C R   L   + +H  
Sbjct: 8   SWNSLISGYTQMGFYHEVMNLFKEARMSDL-RLDKFTFSNALSVCGRTLDLRLGRLIHAL 66

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           +  SG    V+++ +L+  Y   G I+ AR VF++  E D VSWNS+I+ Y +   + E 
Sbjct: 67  ITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEM 126

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAH--VGALNMGIFLHRIACEMGFVESVYVGNALV 232
           L+L  +M    + L+ + L   L +C      ++  G  LH  A ++G    V VG AL+
Sbjct: 127 LRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALL 186

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY-----GVHGRGDEAISFFKQMLMAGF 287
           D YAK G+L+ A  +F  M   +V+ +N+MI G+           +EA+  F +M   G 
Sbjct: 187 DTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGM 246

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            P   TF  +L  CS     E G +  H  + +YNL+        LV+LY  +G +E  L
Sbjct: 247 KPSEFTFSSILKACSTIEAFECG-KQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGL 305

Query: 348 EVINTSSPSDPVLWRTLL 365
           +  +++   D V W +L+
Sbjct: 306 KCFHSTPKLDVVSWTSLI 323



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 191/404 (47%), Gaps = 23/404 (5%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           + +A+L+F       + +WNSLI  + +  S  + +     ML   L+  +++     LK
Sbjct: 92  IDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNL-NSYALGSALK 150

Query: 98  AC-ERVKALNKC-QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           AC     +  +C + LHG  ++ G +  VVV T L+  YA  G +E A  +F  MP+ ++
Sbjct: 151 ACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNV 210

Query: 156 VSWNSIISCYTQA-----SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           V +N++I+ + Q       F  EA+ L+  M+   +    FT   +L +C+ + A   G 
Sbjct: 211 VMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGK 270

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H    +       ++GNALV++Y+  G+++     F    K DV+SW S+IVG+  +G
Sbjct: 271 QIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNG 330

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
           + +  ++ F ++L +G  PD  T   +L  C++   V+ G E  H     Y +K GI ++
Sbjct: 331 QFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSG-EQIHA----YAIKTGIGNF 385

Query: 331 GCLVD----LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
             + +    +Y + G ++ A      +   D V W  ++ S   H   +   + +  L++
Sbjct: 386 TIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEA-VDLFELMK 444

Query: 387 LEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTTP 427
               +      L  + AC+     EEG+     + K +GI  TP
Sbjct: 445 GSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGI--TP 486



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           MP+R++VSWNS+IS YTQ  F+ E + L++  R  D+ LD FT    LS C     L +G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H +    G    V + N+L+DMY KCG +D A  VF    + D +SWNS+I GY   
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLL--CGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           G  DE +    +ML  G + +S      L  CG +    +E G +  H    +  L   +
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECG-KMLHGCAVKLGLDLDV 179

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
                L+D Y + G LE A ++       + V++  ++ 
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIA 218


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 203/559 (36%), Positives = 309/559 (55%), Gaps = 47/559 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F  I+     +WNS+I  F Q  SP +A+  +  M    + +    T    L 
Sbjct: 184 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDV-KASHVTMVGVLS 242

Query: 98  ACERVKALNKCQELHGFV--------------IRSGYERC-----------------VVV 126
           AC +++ L   + +  ++              +   Y +C                  V 
Sbjct: 243 ACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 302

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-D 185
            T ++ GYA +   EAAR V + MP++D+V+WN++IS Y Q     EAL ++  ++ + +
Sbjct: 303 WTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKN 362

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           + L+  TLV  LS+CA VGAL +G ++H    + G   + YV +AL+ MY+KCG+L+ A 
Sbjct: 363 IKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAR 422

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF+ + KRDV  W++MI G  +HG G EA+  F +M  A   P+ +TF  + C CSH G
Sbjct: 423 EVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 482

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTL 364
           LV+E    F+ M S Y + P  KHY C+VD+ GR+G LEKA++ I     P    +W  L
Sbjct: 483 LVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGAL 542

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
           LG+CKIH N+ + E+A   L++LE  + G +VLL+ IYA +   + V+  RK ++  G+K
Sbjct: 543 LGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLK 602

Query: 425 TTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSS 484
             PG S IEI   +H+F+  D +HP ++ +Y KL E+M + K  GY  + S V +     
Sbjct: 603 KEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHV-LQIIEE 661

Query: 485 EDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVR 532
           E+  E+S   HSEKLAI +GL +T    ++R++KNLR            S  Y+R++IVR
Sbjct: 662 EEMKEQSLNLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVR 721

Query: 533 DRVRYHHFRDGLCSCGDYW 551
           DR R+HHFR+G CSC D+W
Sbjct: 722 DRYRFHHFRNGQCSCNDFW 740



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 193/374 (51%), Gaps = 34/374 (9%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA-SLSRPDT 89
           A+S  +SL YA+ +F++I  P +  WN+LIRA+A    P+ +I+ +  M+ + S   P+ 
Sbjct: 74  ALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNK 133

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           +TF F +KA   V +L+  Q LHG  I+S     V V+ +L+  Y + G +++A  VF  
Sbjct: 134 YTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTT 193

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           + E+D+VSWNS+I+ + Q     +AL+L+++M  EDV     T+V +LS+CA +  L  G
Sbjct: 194 IKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFG 253

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR----------------- 252
             +     E     ++ + NA++DMY KCG+++ A  +F  M                  
Sbjct: 254 RRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAIS 313

Query: 253 --------------KRDVLSWNSMIVGYGVHGRGDEAISFFKQM-LMAGFHPDSITFLGL 297
                         K+D+++WN++I  Y  +G+ +EA+  F ++ L      + IT +  
Sbjct: 314 EDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVST 373

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           L  C+  G +E G  + H  + +  +K        L+ +Y + G LEKA EV N+    D
Sbjct: 374 LSACAQVGALELG-RWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRD 432

Query: 358 PVLWRTLLGSCKIH 371
             +W  ++G   +H
Sbjct: 433 VFVWSAMIGGLAMH 446



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 146/289 (50%), Gaps = 13/289 (4%)

Query: 95  TLKACERVKALNKCQELHGFVIRSG-----YERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           T+   +R  +L + ++ H  +IR+G     Y    + +   +  +A+   +E AR VFD 
Sbjct: 34  TISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFAS---LEYARKVFDE 90

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALN 207
           +P+ +  +WN++I  Y      + ++  +  M   +     + +T   L+ + A V +L+
Sbjct: 91  IPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLS 150

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           +G  LH +A +      V+V N+L+  Y  CG+LDSA  VF+ ++++DV+SWNSMI G+ 
Sbjct: 151 LGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 210

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF-HMMVSRYNLKPG 326
             G  D+A+  FK+M         +T +G+L  C+    +E G     ++  +R N+   
Sbjct: 211 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLT 270

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
           + +   ++D+Y + G +E A  + +     D V W T+L    I  + E
Sbjct: 271 LAN--AMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYE 317



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 120/247 (48%), Gaps = 4/247 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           +L+ YAIS       A+ + N +      AWN+LI A+ Q+  P +A+  ++ + +    
Sbjct: 306 MLDGYAIS--EDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNI 363

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           + +  T   TL AC +V AL   + +H ++ ++G +    V++ L+  Y+  G +E AR 
Sbjct: 364 KLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKARE 423

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF+++ +RD+  W+++I          EA+ ++ +M+  +V  +G T   +  +C+H G 
Sbjct: 424 VFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGL 483

Query: 206 LNMGIFL-HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSMI 263
           ++    L +++    G V        +VD+  + G L+ A      M      S W +++
Sbjct: 484 VDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 543

Query: 264 VGYGVHG 270
               +H 
Sbjct: 544 GACKIHA 550


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 203/561 (36%), Positives = 301/561 (53%), Gaps = 61/561 (10%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S   A+ +FN +Q+  + +W  LI    Q     +++  +N M  A L   D F     +
Sbjct: 320 SFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQM-RAELMAIDQFALATLI 378

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
             C     L   ++LH   ++SG+ R +VVS +L+  YA  G ++ A  VF +M ERD+V
Sbjct: 379 SGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIV 438

Query: 157 SWNSIISCYTQASFHLEA-------------------------------LKLYERMRFE- 184
           SW S+I+ Y+Q    ++A                               LK+Y  M  + 
Sbjct: 439 SWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 498

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
           DV  D  T V L   CA +GA  +G  +     + G + +V V NA + MY+KCG +  A
Sbjct: 499 DVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEA 558

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             +F  +  +DV+SWN+MI GY  HG G +A   F  ML  G  PD I+++ +L GCSH 
Sbjct: 559 QKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHS 618

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWR 362
           GLV+EG  YF MM   + + PG++H+ C+VDL GRAG L +A ++I+   P  P   +W 
Sbjct: 619 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLID-KMPMKPTAEVWG 677

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
            LL +CKIH N E+ E+A K++ +L++  +G Y+LLA IY+     +  A+ RKL++  G
Sbjct: 678 ALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKG 737

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           IK  PG+SW+E+ N+VH F  DD SHP    I  K++E+M +   +GY + ES       
Sbjct: 738 IKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTES------- 790

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
                  +S  +HSEKLA+AFG+ + P    + I+KNLR            S    R+ +
Sbjct: 791 ------PRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFV 844

Query: 531 VRDRVRYHHFRDGLCSCGDYW 551
           +RD VR+HHF+ G CSCGDYW
Sbjct: 845 IRDGVRFHHFKSGSCSCGDYW 865



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 212/461 (45%), Gaps = 79/461 (17%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYN----------HMLMASLS-- 85
           + +A  LF+QI+ P     NS++  +A+      AI Y+           +M++A+LS  
Sbjct: 189 VDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQS 248

Query: 86  ------------------RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
                             R D+ T+T +L AC R+ +L   ++LH  VIRS  +    V+
Sbjct: 249 GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA 308

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           + L+  YA  G  + A+ VF+++ +R+ VSW  +I    Q     ++++L+ +MR E + 
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
           +D F L  L+S C +   L +G  LH +  + G   ++ V N+L+ +YAKCG+L +A  V
Sbjct: 369 IDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFV 428

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           FS M +RD++SW SMI  Y   G   +A  FF  M       ++IT+  +L      G  
Sbjct: 429 FSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAE 484

Query: 308 EEGVEYFHMMVSRYNLKPGIKHY-----GC------------------------------ 332
           E+G++ +  M+S+ ++ P    Y     GC                              
Sbjct: 485 EDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANA 544

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ-LEAAS 391
            + +Y + G++ +A ++ +  +  D V W  ++     H    +G+ A K     L   +
Sbjct: 545 AITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQH---GMGKQAAKTFDDMLSKGA 601

Query: 392 AGDYV-LLATIYACTKD---EEGVARTRKLIKSNGIKTTPG 428
             DY+  +A +  C+     +EG      + + +GI  +PG
Sbjct: 602 KPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGI--SPG 640



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 166/371 (44%), Gaps = 34/371 (9%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           ++N YA     SLS A+ LF+++      +WN+L+  + Q+   L  +  +  M  +  S
Sbjct: 77  MMNGYA--KQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDS 134

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGF-------------------VIRSGY------ 120
            P+ FTF   +K+C  +       +L G                     +R GY      
Sbjct: 135 LPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASR 194

Query: 121 -----ERCVVVSTN-LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
                ER  +   N ++ GYA    I+ A   F++M ERD+VSWN +I+  +Q+    EA
Sbjct: 195 LFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREA 254

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L L   M  + V LD  T    L++CA + +L  G  LH            YV +AL+++
Sbjct: 255 LGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIEL 314

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAKCG+   A  VF+ ++ R+ +SW  +I G   +    +++  F QM       D    
Sbjct: 315 YAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFAL 374

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
             L+ GC ++  +  G +  H +  +      I     L+ LY + G L+ A  V ++ S
Sbjct: 375 ATLISGCFNRMDLCLGRQ-LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS 433

Query: 355 PSDPVLWRTLL 365
             D V W +++
Sbjct: 434 ERDIVSWTSMI 444



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 122/280 (43%), Gaps = 37/280 (13%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           E  V+    +M GYA  G +  A  +FD MP RD+ SWN+++S Y QA   L+ L+ +  
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 181 M-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           M R  D   + FT  C++ SC  +G   +   L  +  +  F     V  ALVDM+ +CG
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCG 187

Query: 240 NLDSA------------FC-------------------VFSRMRKRDVLSWNSMIVGYGV 268
            +D A            FC                    F  M +RDV+SWN MI     
Sbjct: 188 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 247

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
            GR  EA+    +M   G   DS T+   L  C+    +  G +  H  V R    P I 
Sbjct: 248 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQ-LHAKVIRS--LPQID 304

Query: 329 HY--GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            Y    L++LY + G  ++A  V N+    + V W  L+G
Sbjct: 305 PYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIG 344



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 34/183 (18%)

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC------------------ 238
           L SC   GAL     LH     +G   +V++ N L+  Y  C                  
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 70

Query: 239 --------------GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
                         G+L  A  +F RM +RDV SWN+++ GY    R  + +  F  M  
Sbjct: 71  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130

Query: 285 AGFH-PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
           +G   P++ TF  ++  C   G  E   +   +   +++          LVD++ R G +
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFW-KFDFWGDPDVETALVDMFVRCGYV 189

Query: 344 EKA 346
           + A
Sbjct: 190 DFA 192


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 200/542 (36%), Positives = 300/542 (55%), Gaps = 18/542 (3%)

Query: 23   GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
            G  L+N Y      SL  A  +F+ +++    +W ++I  FA      +A   +  M   
Sbjct: 625  GNALINMYI--RCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQND 682

Query: 83   SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
               +P   TF+  LKAC     L++ +++   ++ SGYE    V   L+  Y+ +G +  
Sbjct: 683  GF-KPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTD 741

Query: 143  ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
            AR VFD MP RD++SWN +I+ Y Q      AL+   +M+ + V L+ F+ V +L++C+ 
Sbjct: 742  ARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSS 801

Query: 203  VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
              AL  G  +H    +      V VG AL+ MYAKCG+L+ A  VF    +++V++WN+M
Sbjct: 802  FSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAM 861

Query: 263  IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
            I  Y  HG   +A+ FF  M   G  PD  TF  +L  C+H GLV EG   F  + S++ 
Sbjct: 862  INAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHG 921

Query: 323  LKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAM 381
            L P I+HYGCLV L GRAG+ ++A  +IN    P D  +W TLLG+C+IH NV + E A 
Sbjct: 922  LSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAA 981

Query: 382  KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
             N ++L A +   YVLL+ +YA     + VA+ R++++  GI+  PG SWIE+ N +H+F
Sbjct: 982  NNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEF 1041

Query: 442  VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
            +  D+SHP+   IY +L+ +    +  GY+ D   V    +  ++  E S   HSE+LAI
Sbjct: 1042 IAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVL--HNLDKEHQETSLCTHSERLAI 1099

Query: 502  AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
            A+GL  TP GT +RI KNLR            S    R++I RD  R+H F++G CSC D
Sbjct: 1100 AYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCED 1159

Query: 550  YW 551
            +W
Sbjct: 1160 FW 1161



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 164/311 (52%), Gaps = 2/311 (0%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           +N+LI A AQ     +A   Y  M    +    T T+   L AC   KAL   + +H  +
Sbjct: 353 YNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRT-TYLSVLNACSTSKALGAGELIHSHI 411

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
              G+   V +  +L+  YA  G +  AR +F+ MP+RDL+SWN+II+ Y +     EA+
Sbjct: 412 SEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAM 471

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           KLY++M+ E V     T + LLS+C +  A + G  +H      G   + ++ NAL++MY
Sbjct: 472 KLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMY 531

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
            +CG++  A  VF   R RD++SWNSMI G+  HG  + A   F +M   G  PD ITF 
Sbjct: 532 RRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFA 591

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
            +L GC +   +E G +  HM++    L+  +     L+++Y R G L+ A EV ++   
Sbjct: 592 SVLVGCKNPEALELGRQ-IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRH 650

Query: 356 SDPVLWRTLLG 366
            + + W  ++G
Sbjct: 651 RNVMSWTAMIG 661



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 172/345 (49%), Gaps = 6/345 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA      L  A+ LFN +      +WN++I  +A+     +A+  Y  M   
Sbjct: 423 GNSLISMYA--RCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSE 480

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            + +P   TF   L AC    A +  + +H  ++RSG +    ++  LM  Y   G I  
Sbjct: 481 GV-KPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIME 539

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A++VF+    RD++SWNS+I+ + Q   +  A KL+  M+ E +  D  T   +L  C +
Sbjct: 540 AQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKN 599

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
             AL +G  +H +  E G    V +GNAL++MY +CG+L  A+ VF  +R R+V+SW +M
Sbjct: 600 PEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAM 659

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF-HMMVSRY 321
           I G+   G   +A   F QM   GF P   TF  +L  C     ++EG +   H++ S Y
Sbjct: 660 IGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGY 719

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            L  G+ +   L+  Y ++G +  A +V +     D + W  ++ 
Sbjct: 720 ELDTGVGN--ALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIA 762



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 212/459 (46%), Gaps = 26/459 (5%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LLN Y       L  A+ +F+ I      ++N+++  +AQ     + I  +  M    + 
Sbjct: 224 LLNMYG--KCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIP 281

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD  T+   L A      L++ + +H   +  G    + V T L   +   G +  A+ 
Sbjct: 282 -PDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQ 340

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
             +   +RD+V +N++I+   Q   + EA + Y +MR + V ++  T + +L++C+   A
Sbjct: 341 ALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKA 400

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H    E+G    V +GN+L+ MYA+CG+L  A  +F+ M KRD++SWN++I G
Sbjct: 401 LGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAG 460

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y       EA+  +KQM   G  P  +TFL LL  C++     +G      M+    L+ 
Sbjct: 461 YARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDG-----KMIHEDILRS 515

Query: 326 GIKHYG----CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           GIK  G     L+++Y R G + +A  V   +   D + W +++     H +    E A 
Sbjct: 516 GIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSY---EAAY 572

Query: 382 KNLVQLEAAS-AGDYVLLATIYACTKDEEGVARTRK---LIKSNGIKTTPGWSWIEIGNQ 437
           K  ++++      D +  A++    K+ E +   R+   LI  +G++       + +GN 
Sbjct: 573 KLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLD-----VNLGNA 627

Query: 438 VHKFVVDDKSHPDADMIYRKL--EEIMHRAKFIGYTKDE 474
           +    +   S  DA  ++  L    +M     IG   D+
Sbjct: 628 LINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQ 666



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 179/397 (45%), Gaps = 18/397 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+S A  +F ++      +WNSLI  +AQ     +A   +  M  A    P   T+   L
Sbjct: 132 SVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFI-PSKITYISIL 190

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC     L   +++H  +I +GY+R   V  +L+  Y     + +AR VF  +  RD+V
Sbjct: 191 TACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVV 250

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           S+N+++  Y Q ++  E + L+ +M  E +  D  T + LL +      L+ G  +H++A
Sbjct: 251 SYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLA 310

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              G    + VG AL  M+ +CG++  A         RDV+ +N++I     HG  +EA 
Sbjct: 311 VNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAF 370

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             + QM   G   +  T+L +L  CS    +  G E  H  +S       ++    L+ +
Sbjct: 371 EQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSLISM 429

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGD 394
           Y R G L +A E+ NT    D + W  ++      R  + GE AMK    +Q E    G 
Sbjct: 430 YARCGDLPRARELFNTMPKRDLISWNAIIAG--YARREDRGE-AMKLYKQMQSEGVKPGR 486

Query: 395 YVLLATIYACTKDE---------EGVARTRKLIKSNG 422
              L  + ACT            E + R+   IKSNG
Sbjct: 487 VTFLHLLSACTNSSAYSDGKMIHEDILRSG--IKSNG 521



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 160/335 (47%), Gaps = 2/335 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  AQ +F   +     +WNS+I   AQ  S   A   +  M    L  PD  TF   L
Sbjct: 536 SIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGL-EPDKITFASVL 594

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
             C+  +AL   +++H  +I SG +  V +   L+  Y   G ++ A  VF ++  R+++
Sbjct: 595 VGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVM 654

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW ++I  +       +A +L+ +M+ +       T   +L +C     L+ G  +    
Sbjct: 655 SWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHI 714

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              G+     VGNAL+  Y+K G++  A  VF +M  RD++SWN MI GY  +G G  A+
Sbjct: 715 LNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTAL 774

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
            F  QM   G   +  +F+ +L  CS    +EEG +  H  + +  ++  ++    L+ +
Sbjct: 775 QFAYQMQEQGVVLNKFSFVSILNACSSFSALEEG-KRVHAEIVKRKMQGDVRVGAALISM 833

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           Y + G LE+A EV +  +  + V W  ++ +   H
Sbjct: 834 YAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQH 868



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 141/280 (50%), Gaps = 1/280 (0%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           ++ C R ++L + + +H  ++ +G    + +S  L+  Y     +  A  VF  MP RD+
Sbjct: 89  VQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDV 148

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           +SWNS+ISCY Q  F  +A +L+E M+         T + +L++C     L  G  +H  
Sbjct: 149 ISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSK 208

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             E G+     V N+L++MY KC +L SA  VFS + +RDV+S+N+M+  Y      +E 
Sbjct: 209 IIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEEC 268

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           I  F QM   G  PD +T++ LL   +   +++EG +  H +     L   I+    L  
Sbjct: 269 IGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEG-KRIHKLAVNEGLNSDIRVGTALAT 327

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
           ++ R G +  A + +   +  D V++  L+ +   H + E
Sbjct: 328 MFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYE 367



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 3/174 (1%)

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
           V L+ +C    +L     +H    E G    +++ N L++MY KC ++  A  VF +M +
Sbjct: 86  VDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPR 145

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           RDV+SWNS+I  Y   G   +A   F++M  AGF P  IT++ +L  C     +E G + 
Sbjct: 146 RDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKI 205

Query: 314 FHMMV-SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
              ++ + Y   P +++   L+++YG+   L  A +V +     D V + T+LG
Sbjct: 206 HSKIIEAGYQRDPRVQN--SLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLG 257


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 201/542 (37%), Positives = 297/542 (54%), Gaps = 18/542 (3%)

Query: 23   GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
            G  L+N Y      SL  A+ +F+ +Q+    +W ++I   A     ++AI  +  M   
Sbjct: 570  GNALINMYI--RCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNE 627

Query: 83   SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
               RP   TF+  LK C     L++ +++  +++ SGYE    V   L+  Y+ +G +  
Sbjct: 628  GF-RPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTD 686

Query: 143  ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
            AR VFD MP RD+VSWN II+ Y Q      A++   +M+ +DV  + F+ V LL++C+ 
Sbjct: 687  AREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSS 746

Query: 203  VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
              AL  G  +H    +      V VG AL+ MYAKCG+   A  VF  + +++V++WN+M
Sbjct: 747  FSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAM 806

Query: 263  IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
            I  Y  HG   +A+ FF  M   G  PD  TF  +L  C+H GLV EG + F  M S Y 
Sbjct: 807  INAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYG 866

Query: 323  LKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAM 381
            + P I+HYGCLV L GRA + ++A  +IN    P D  +W TLLG+C+IH N+ + E A 
Sbjct: 867  VLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAA 926

Query: 382  KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
             N ++L A +   Y+LL+ +YA     + VA+ R++++  GI+  PG SWIE+ N +H+F
Sbjct: 927  NNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEF 986

Query: 442  VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
            +  D+SHP+   IY +L+ +    +  GY  D   V      +    E S   HSE+LAI
Sbjct: 987  IAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQ--ETSLCTHSERLAI 1044

Query: 502  AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
            A+GL  TP GT +RI KNLR            S    R++I RD  R+H F++G CSC D
Sbjct: 1045 AYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCED 1104

Query: 550  YW 551
            YW
Sbjct: 1105 YW 1106



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 185/367 (50%), Gaps = 13/367 (3%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVSSSL----------SYAQLLFNQIQNPQTQAWNSLIR 61
           L++ ++ H++  E  LNS  I V ++L            A+  F    +     +N+LI 
Sbjct: 245 LDEGKRIHKLTVEEGLNS-DIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIA 303

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
           A AQ    ++A   Y  M    ++   T T+   L AC   KAL   + +H  +   G+ 
Sbjct: 304 ALAQHGHNVEAFEQYYRMRSDGVALNRT-TYLSILNACSTSKALEAGKLIHSHISEDGHS 362

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
             V +   L+  YA  G +  AR +F  MP+RDL+SWN+II+ Y +     EA++LY++M
Sbjct: 363 SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM 422

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           + E V     T + LLS+CA+  A   G  +H      G   + ++ NAL++MY +CG+L
Sbjct: 423 QSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSL 482

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
             A  VF   + RDV+SWNSMI G+  HG  + A   F++M      PD+ITF  +L GC
Sbjct: 483 MEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGC 542

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
            +   +E G +  H  ++   L+  +     L+++Y R G L+ A  V ++    D + W
Sbjct: 543 KNPEALELGKQ-IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSW 601

Query: 362 RTLLGSC 368
             ++G C
Sbjct: 602 TAMIGGC 608



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 209/446 (46%), Gaps = 22/446 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F  I      ++N+++  +AQ     + +  +  M    +S PD  T+   L 
Sbjct: 179 LPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGIS-PDKVTYINLLD 237

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A      L++ + +H   +  G    + V T L+      G +++A+  F    +RD+V 
Sbjct: 238 AFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVV 297

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           +N++I+   Q   ++EA + Y RMR + V L+  T + +L++C+   AL  G  +H    
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHIS 357

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           E G    V +GNAL+ MYA+CG+L  A  +F  M KRD++SWN++I GY       EA+ 
Sbjct: 358 EDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMR 417

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG----CL 333
            +KQM   G  P  +TFL LL  C++     +G      M+    L+ GIK  G     L
Sbjct: 418 LYKQMQSEGVKPGRVTFLHLLSACANSSAYADG-----KMIHEDILRSGIKSNGHLANAL 472

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           +++Y R G L +A  V   +   D + W +++     H + E      + +   E     
Sbjct: 473 MNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEP-- 530

Query: 394 DYVLLATIYACTKDEEGVARTRKL---IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           D +  A++ +  K+ E +   +++   I  +G++       + +GN +    +   S  D
Sbjct: 531 DNITFASVLSGCKNPEALELGKQIHGRITESGLQLD-----VNLGNALINMYIRCGSLQD 585

Query: 451 ADMIYRKLE--EIMHRAKFIGYTKDE 474
           A  ++  L+  ++M     IG   D+
Sbjct: 586 ARNVFHSLQHRDVMSWTAMIGGCADQ 611



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 172/345 (49%), Gaps = 6/345 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA      L  A+ LF  +      +WN++I  +A+     +A+  Y  M   
Sbjct: 368 GNALISMYA--RCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSE 425

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            + +P   TF   L AC    A    + +H  ++RSG +    ++  LM  Y   G +  
Sbjct: 426 GV-KPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLME 484

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A++VF+    RD++SWNS+I+ + Q   +  A KL++ M+ E++  D  T   +LS C +
Sbjct: 485 AQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKN 544

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
             AL +G  +H    E G    V +GNAL++MY +CG+L  A  VF  ++ RDV+SW +M
Sbjct: 545 PEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAM 604

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF-HMMVSRY 321
           I G    G   +AI  F QM   GF P   TF  +L  C+    ++EG +   +++ S Y
Sbjct: 605 IGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGY 664

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            L  G+ +   L+  Y ++G +  A EV +     D V W  ++ 
Sbjct: 665 ELDTGVGN--ALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIA 707



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 178/392 (45%), Gaps = 16/392 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  +F ++      +WNSLI  +AQ     +A   +  M  A    P+  T+   L AC 
Sbjct: 81  AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI-PNKITYISILTACY 139

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               L   +++H  +I++GY+R   V  +L+  Y   G +  AR VF  +  RD+VS+N+
Sbjct: 140 SPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNT 199

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  Y Q ++  E L L+ +M  E +  D  T + LL +      L+ G  +H++  E G
Sbjct: 200 MLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG 259

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               + VG ALV M  +CG++DSA   F     RDV+ +N++I     HG   EA   + 
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYY 319

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M   G   +  T+L +L  CS    +E G +  H  +S       ++    L+ +Y R 
Sbjct: 320 RMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARC 378

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE-IAMKNLVQLEAASAGDYVLLA 399
           G L KA E+  T    D + W  ++      R  + GE + +   +Q E    G    L 
Sbjct: 379 GDLPKARELFYTMPKRDLISWNAIIAG--YARREDRGEAMRLYKQMQSEGVKPGRVTFLH 436

Query: 400 TIYACTKDE---------EGVARTRKLIKSNG 422
            + AC             E + R+   IKSNG
Sbjct: 437 LLSACANSSAYADGKMIHEDILRSG--IKSNG 466



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 159/335 (47%), Gaps = 2/335 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  AQ +F   Q     +WNS+I   AQ  S   A   +  M    L  PD  TF   L
Sbjct: 481 SLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEEL-EPDNITFASVL 539

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
             C+  +AL   +++HG +  SG +  V +   L+  Y   G ++ AR+VF ++  RD++
Sbjct: 540 SGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVM 599

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW ++I         ++A++L+ +M+ E       T   +L  C     L+ G  +    
Sbjct: 600 SWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYI 659

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              G+     VGNAL+  Y+K G++  A  VF +M  RD++SWN +I GY  +G G  A+
Sbjct: 660 LNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAV 719

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
            F  QM      P+  +F+ LL  CS    +EEG +  H  + +  L+  ++    L+ +
Sbjct: 720 EFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEG-KRVHAEIVKRKLQGDVRVGAALISM 778

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           Y + G   +A EV +     + V W  ++ +   H
Sbjct: 779 YAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQH 813



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 142/289 (49%), Gaps = 2/289 (0%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T+   L+ C R + L + + +H  ++ +     + +S  L+  Y     +  A  VF  M
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           P RD++SWNS+ISCY Q  F  +A +L+E M+      +  T + +L++C     L  G 
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H    + G+     V N+L+ MY KCG+L  A  VF+ +  RDV+S+N+M+  Y    
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
              E +  F QM   G  PD +T++ LL   +   +++EG +  H +     L   I+  
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG-KRIHKLTVEEGLNSDIRVG 267

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGE 378
             LV +  R G ++ A +    ++  D V++  L+ +   H  NVE  E
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFE 316


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 202/595 (33%), Positives = 321/595 (53%), Gaps = 54/595 (9%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLNSYAISVS-----SSLSYAQLLFNQIQNPQTQAWN 57
           L  + R   + +AR+  +   EW   S+   ++     S +  AQ +FN++      +WN
Sbjct: 238 LAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWN 297

Query: 58  SLIRAFAQ-----------SLSPLQAIFYY---------NHML------MASLSRPDTFT 91
           +++  +A+            ++P++ +F +         N ML        ++   +  +
Sbjct: 298 TMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVS 357

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           +   + A  + + + + +EL   +      R V     ++ GYA  G+++ AR++F  MP
Sbjct: 358 WNAMMAAYVQRRMMEEAKELFDAMPC----RNVASWNTMLTGYAQAGMLDEARAIFGMMP 413

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           ++D VSW ++++ Y+Q  F  E L+L++ M      ++     C+LS+CA + AL  G+ 
Sbjct: 414 QKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 473

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           LH    + G+    +VGNAL+ MY KCG+++ A   F  M +RDV+SWN+MI GY  HG 
Sbjct: 474 LHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGF 533

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           G EA+  F  M      PD IT +G+L  CSH GLVE+G+ YF+ M   + +    +HY 
Sbjct: 534 GKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYT 593

Query: 332 CLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           C++DL GRAG+L++A+ ++ +     D  +W  LLG+ +IHRN E+G  A + + +LE  
Sbjct: 594 CMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPE 653

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           +AG YVLL+ IYA +     V + R ++   G+K  PG+SWIE+ N+VH F V D  HP+
Sbjct: 654 NAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPE 713

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
            + IY  LE++  R K  GY     +V   V     E  L+    YHSEKLA+A+G+   
Sbjct: 714 REDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLK----YHSEKLAVAYGILKI 769

Query: 509 PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           P G  +R++KNLR            S    R +I+RD  R+HHFRDG CSCGDYW
Sbjct: 770 PPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 191/439 (43%), Gaps = 67/439 (15%)

Query: 30  YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR--- 86
           +A+ VSSSL+  + LF+++    + ++N +I + A            NH L+ SL+R   
Sbjct: 177 HALGVSSSLADVRALFDEMPVKDSVSYNVMISSHA------------NHGLV-SLARHYF 223

Query: 87  -----PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN-LMRGYAANGVI 140
                 D  ++   L A  R   + + +EL  F  R+ ++    +S N LM GY     I
Sbjct: 224 DLAPEKDAVSWNGMLAAYVRNGRIQEAREL--FDSRTEWD---AISWNALMAGYVQRSQI 278

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
           E A+ +F+ MP+RD+VSWN+++S Y +     EA +L++     DV    FT   ++S  
Sbjct: 279 EEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDV----FTWTAIVSGY 334

Query: 201 AHVGALN--------------------MGIFLHRIACEMG-------FVESVYVGNALVD 233
           A  G L                     M  ++ R   E            +V   N ++ 
Sbjct: 335 AQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLT 394

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
            YA+ G LD A  +F  M ++D +SW +M+  Y   G  +E +  FK+M   G   +   
Sbjct: 395 GYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSA 454

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F  +L  C+    +E G++  H  + +     G      L+ +Y + G +E+A       
Sbjct: 455 FACVLSTCADIAALECGMQ-LHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEM 513

Query: 354 SPSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIYACTKD---E 408
              D V W T++     H     G+ A++  + ++  +    D  L+  + AC+     E
Sbjct: 514 EERDVVSWNTMIAGYARH---GFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVE 570

Query: 409 EGVARTRKLIKSNGIKTTP 427
           +G++    + +  G+ T P
Sbjct: 571 KGISYFYSMHRDFGVATKP 589



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 115/271 (42%), Gaps = 40/271 (14%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           R       ++ GYAANG +  A S F ++P  D  S+N+++     +S   +   L++ M
Sbjct: 136 RSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEM 195

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE-----SVYVG-------- 228
             +    D  +   ++SS A+ G +++      +A E   V      + YV         
Sbjct: 196 PVK----DSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEAR 251

Query: 229 --------------NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                         NAL+  Y +   ++ A  +F++M +RDV+SWN+M+ GY   G   E
Sbjct: 252 ELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAE 311

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A   F    +     D  T+  ++ G +  G++EE    F  M  +  +      +  ++
Sbjct: 312 ARRLFDVAPIR----DVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVS-----WNAMM 362

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             Y +   +E+A E+ +     +   W T+L
Sbjct: 363 AAYVQRRMMEEAKELFDAMPCRNVASWNTML 393



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 36/233 (15%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N  +  + + G +  A  +F+ M +R   ++N+M+ GY  +GR  +A+SFF+ +      
Sbjct: 111 NRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP----R 166

Query: 289 PDSITFLGLL--CGCS----------HQGLVEEGVEYFHMMVSRYN--LKPGIKHY---- 330
           PDS ++  LL   G S           +  V++ V Y  M+ S  N  L    +HY    
Sbjct: 167 PDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLA 226

Query: 331 --------GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
                     ++  Y R G++++A E+ ++ +  D + W  L+        +E  +    
Sbjct: 227 PEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFN 286

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIG 435
            + Q +  S   +  + + YA   D   +A  R+L     I+    W+ I  G
Sbjct: 287 KMPQRDVVS---WNTMVSGYARRGD---MAEARRLFDVAPIRDVFTWTAIVSG 333


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 200/544 (36%), Positives = 302/544 (55%), Gaps = 48/544 (8%)

Query: 36  SSLSYAQLLFNQIQNPQ----TQAWNSLIRAFAQSLSPLQAIFYY----------NHMLM 81
           S +  A+ LF++  NPQ    T  +NSL+  +A +      +  +          N + M
Sbjct: 59  SLIDNARKLFDE--NPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTM 116

Query: 82  ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
             L +P        L  C           +HGF ++ G +    V   L+  Y  +G I+
Sbjct: 117 LGLVQPCGIPGNLGLGMC-----------VHGFCVKFGLDMDSSVGNCLLTMYVKSGEID 165

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
             R +FD MP + L++WN++I+ Y Q       L+LY+ M  +    D  TLV +LSSCA
Sbjct: 166 CGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCA 225

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
           H+GAL++G  + R     GF  + ++ NALV+MYA+CGNL  A  +F  M  + V+SW +
Sbjct: 226 HLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTA 285

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           +I GYG+HG+G+ A+  F +M+  G  PD   F+ +L  CSH GL  +G++YF +M  +Y
Sbjct: 286 IIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKY 345

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIA 380
            L+PG +HY C+VDL GRAG+L +A E+I +    +D  LW  LLG+CKIHRNVE+ E+A
Sbjct: 346 GLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELA 405

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + +++LE  + G YVLL+ +Y    + EG+ R R L++   +K  PG S++E   +VH 
Sbjct: 406 FEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHL 465

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFI-GYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
           F   D++HP  + IY+KL E+ +  K + G  K++          E++L  S   HSEKL
Sbjct: 466 FFAGDRNHPQTNEIYKKLNELENLVKDLDGCKKNDH------ERREEYL-NSMGVHSEKL 518

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           A+AF L  T   T + I+KNLR            S    R  +VRD  R+HHF++G CSC
Sbjct: 519 AVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSC 578

Query: 548 GDYW 551
            +YW
Sbjct: 579 KEYW 582



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 155/300 (51%), Gaps = 5/300 (1%)

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           ++ S + P+ FTF F +K+C  +      ++LH  V ++G      V T+L+  Y    +
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 140 IEAARSVFDNMPE-RDL-VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           I+ AR +FD  P+ R L V +NS++S Y   S   + + L+  MR   V ++G T++ L+
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
             C   G L +G+ +H    + G      VGN L+ MY K G +D    +F  M ++ ++
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +WN+MI GY  +G  +  +  +K+M   GF PD +T +G+L  C+H G +  G E    M
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM 240

Query: 318 VS-RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEI 376
               ++  P + +   LV++Y R G L+KA ++ +       V W  ++G   +H   E+
Sbjct: 241 EGFGFSSNPFLNN--ALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEV 298



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 140/320 (43%), Gaps = 11/320 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL  Y    S  +   + LF+++       WN++I  +AQ+      +  Y  M   
Sbjct: 151 GNCLLTMYV--KSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESK 208

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
               PD  T    L +C  + AL+  +E+   +   G+     ++  L+  YA  G ++ 
Sbjct: 209 GFC-PDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKK 267

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR +FD MP + +VSW +II  Y        A+ L++ M    +  DG   V +LS+C+H
Sbjct: 268 ARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSH 327

Query: 203 VGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR-DVLSWN 260
            G  N G+ +   +  + G        + +VD+  + G L+ A  +   M+ R D   W 
Sbjct: 328 AGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWG 387

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           +++    +H   + A   F+Q++     P +  +  LL     +    EG+    M++ +
Sbjct: 388 ALLGACKIHRNVELAELAFEQVIE--LEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRK 445

Query: 321 YNLKPGIKHYGC-LVDLYGR 339
             LK   K  GC  V+  GR
Sbjct: 446 RKLK---KDPGCSYVEFKGR 462


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 196/549 (35%), Positives = 308/549 (56%), Gaps = 27/549 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPL-----QAIFYYN 77
           G  LL++YA      L  A  +F  + +P    +N++I  F Q  +       +A++ + 
Sbjct: 261 GTALLDTYA--KIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 318

Query: 78  HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
            M    + +P  FTF+  LKAC  ++A    +++H  + +   +    +   L+  Y+ +
Sbjct: 319 EMQSRGM-KPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLS 377

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G IE     F + P+ D+VSW S+I  + Q       L L+  + F     D FT+  +L
Sbjct: 378 GSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIML 437

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           S+CA++ A+  G  +H  A + G      + N+ + MYAKCG++DSA   F   +  D++
Sbjct: 438 SACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIV 497

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           SW+ MI     HG   EA+  F+ M  +G  P+ ITFLG+L  CSH GLVEEG+ YF +M
Sbjct: 498 SWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIM 557

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEI 376
              + + P +KH  C+VDL GRAG+L +A   ++++    DPV+WR+LL +C++H+  + 
Sbjct: 558 KKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDT 617

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
           G+   + +++LE  +A  YVLL  IY     +      R L+K  G+K  PG SWIE+GN
Sbjct: 618 GKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGN 677

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSS--AY 494
            VH FV  D+SHP++ +IY +LEE++   K + Y  DE LV+    +SE   + +S  +Y
Sbjct: 678 VVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI-DEKLVS---DASEPKHKDNSMVSY 733

Query: 495 HSEKLAIAFGLATTPDGTSLRIVKNLRSIAY------------SRDLIVRDRVRYHHFRD 542
           HSEKLA+ FG+ + P    +R++KNLRS  +            +R++I+RD +R+H FRD
Sbjct: 734 HSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRD 793

Query: 543 GLCSCGDYW 551
           G CSCGDYW
Sbjct: 794 GSCSCGDYW 802



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 3/281 (1%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D+ T+T  ++   R  +L   +  H  +I++ ++ C+ +  NL+  Y   G  + A+ +F
Sbjct: 18  DSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLF 77

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D MP+R++VSWNS+IS YTQ  F+ E + L++  R  D+ LD FT    LS C     L 
Sbjct: 78  DRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLR 137

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           +G  +H +    G    V + N+L+DMY KCG +D A  VF    + D +SWNS+I GY 
Sbjct: 138 LGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYV 197

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLL--CGCSHQGLVEEGVEYFHMMVSRYNLKP 325
             G  DE +    +ML  G + +S      L  CG +    +E G +  H    +  L  
Sbjct: 198 RIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECG-KMLHGCAVKLGLDL 256

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            +     L+D Y + G LE A ++       + V++  ++ 
Sbjct: 257 DVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIA 297



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 163/332 (49%), Gaps = 9/332 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+++      +WNSLI  + Q     + +  +    M+ L R D FTF+  L  C 
Sbjct: 73  AKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDL-RLDKFTFSNALSVCG 131

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R   L   + +H  +  SG    V+++ +L+  Y   G I+ AR VF++  E D VSWNS
Sbjct: 132 RTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNS 191

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH--VGALNMGIFLHRIACE 218
           +I+ Y +   + E L+L  +M    + L+ + L   L +C      ++  G  LH  A +
Sbjct: 192 LIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVK 251

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY-----GVHGRGD 273
           +G    V VG AL+D YAK G+L+ A  +F  M   +V+ +N+MI G+           +
Sbjct: 252 LGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFAN 311

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           EA+  F +M   G  P   TF  +L  CS     E G +  H  + +YNL+        L
Sbjct: 312 EAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQ-IHAQIFKYNLQSDEFIGNAL 370

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           V+LY  +G +E  L+  +++   D V W +L+
Sbjct: 371 VELYSLSGSIEDGLKCFHSTPKLDVVSWTSLI 402



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 128/293 (43%), Gaps = 8/293 (2%)

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
           LD  T   L+      G+L  G   H    +  F   +++ N L+ MY KCG  D A  +
Sbjct: 17  LDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKL 76

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F RM KR+V+SWNS+I GY   G   E ++ FK+  M+    D  TF   L  C     +
Sbjct: 77  FDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDL 136

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-G 366
             G    H +++   L   +     L+D+Y + G+++ A  V  ++   D V W +L+ G
Sbjct: 137 RLG-RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAG 195

Query: 367 SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTT 426
             +I  N E+  + +K L      +   Y L + + AC  +        K++    +K  
Sbjct: 196 YVRIGSNDEMLRLLVKMLRH--GLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLG 253

Query: 427 PGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE---IMHRAKFIGYTKDESL 476
                + +G  +           DA  I++ + +   +M+ A   G+ + E++
Sbjct: 254 LDLDVV-VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETM 305


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 204/534 (38%), Positives = 301/534 (56%), Gaps = 22/534 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+ YA+ +F++ +      WN+L RA   +    + +  Y  M    +   D FT+T+ L
Sbjct: 127 SVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE-SDRFTYTYVL 185

Query: 97  KACE----RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
           KAC      V  L K +E+H  + R GY   V + T L+  YA  G ++ A  VF  MP 
Sbjct: 186 KACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPV 245

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFE--DVGLDGFTLVCLLSSCAHVGALNMGI 210
           R++VSW+++I+CY +     EAL+ +  M  E  D   +  T+V +L +CA + AL  G 
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGK 305

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H      G    + V +ALV MY +CG L+    VF RM  RDV+SWNS+I  YGVHG
Sbjct: 306 LIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHG 365

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
            G +AI  F++ML  G  P  +TF+ +L  CSH+GLVEEG   F  M   + +KP I+HY
Sbjct: 366 YGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHY 425

Query: 331 GCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
            C+VDL GRA +L++A +++ +  +   P +W +LLGSC+IH NVE+ E A + L  LE 
Sbjct: 426 ACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEP 485

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
            +AG+YVLLA IYA  +  + V R +KL++  G++  PG  W+E+  +++ FV  D+ +P
Sbjct: 486 KNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNP 545

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
             + I+  L ++    K  GY      V     + E   E+    HSEKLA+AFGL  T 
Sbjct: 546 LMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEK--ERIVLGHSEKLALAFGLINTS 603

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            G  +RI KNLR            S    ++++VRD  R+H F++G+CSCGDYW
Sbjct: 604 KGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 179/381 (46%), Gaps = 24/381 (6%)

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
           N LI++  +     QAI      +++  S P   T+   +  C    +L+    +H  ++
Sbjct: 50  NQLIQSLCKEGKLKQAI-----RVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHIL 104

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
            +G ++   ++T L+  Y+  G ++ AR VFD   +R +  WN++    T A    E L 
Sbjct: 105 DNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLG 164

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCA----HVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           LY +M    V  D FT   +L +C      V  L  G  +H      G+   VY+   LV
Sbjct: 165 LYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLV 224

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML--MAGFHPD 290
           DMYA+ G +D A  VF  M  R+V+SW++MI  Y  +G+  EA+  F++M+       P+
Sbjct: 225 DMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPN 284

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
           S+T + +L  C+    +E+G +  H  + R  L   +     LV +YGR GKLE    V 
Sbjct: 285 SVTMVSVLQACASLAALEQG-KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVF 343

Query: 351 NTSSPSDPVLWRTLLGSCKIH----RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
           +     D V W +L+ S  +H    + ++I E  + N      AS      ++ + AC+ 
Sbjct: 344 DRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLAN-----GASPTPVTFVSVLGACSH 398

Query: 407 D---EEGVARTRKLIKSNGIK 424
           +   EEG      + + +GIK
Sbjct: 399 EGLVEEGKRLFETMWRDHGIK 419


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 189/480 (39%), Positives = 286/480 (59%), Gaps = 20/480 (4%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +P+ FT++  L A   V       E+H   I+  Y +   V T L+  Y   G ++ A  
Sbjct: 7   KPNDFTYSTILTAQPGVSPF----EMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASK 62

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF  + E+D+V+W+++I  Y Q      A++++ +M  E +  + +T   ++++CA   A
Sbjct: 63  VFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTA 122

Query: 206 -LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
            +  G  LH  + +  F  ++ V +AL+ MY+K G+++SAF VF R R+RD++SWNS+I 
Sbjct: 123 GVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIIS 182

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GY  HG G +A+  F++M       D +TF+G++  C+H GL  EG  YF +MV  ++++
Sbjct: 183 GYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIE 242

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
           P ++HY C+VDLYGRAG L KA+E+IN    P+   +WRTLL +  IHRN+E+G++A   
Sbjct: 243 PRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEVGKLAADK 302

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           L+ L+  +   YVLL  +YA   + +  A+ RKL++   +K   G+SWIE+ N+ + F+ 
Sbjct: 303 LISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEVKNKTYTFLA 362

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
            D SHP ++ IY KLEE+  + K  GY  D S V       E+  E   + HSE+LAIAF
Sbjct: 363 GDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVF--QDVDEEHKEAILSQHSERLAIAF 420

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           GL  TP GT L+IVKNLR            SI   RD++VRD  R+HHF+ GLCSCGDYW
Sbjct: 421 GLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGGLCSCGDYW 480



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 130/250 (52%), Gaps = 6/250 (2%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL++Y      ++  A  +F +I+     AW+++I  +AQ      A+  +  M   
Sbjct: 44  GTALLDAYV--KRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKE 101

Query: 83  SLSRPDTFTFTFTLKACERVKA-LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
            + +P+ +TF+  + AC    A + + ++LH + I+S +   + VS+ L+  Y+  G IE
Sbjct: 102 KI-KPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIE 160

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
           +A  VF    ERDLVSWNSIIS Y Q  +  +AL+++E M+ +++ +DG T + ++S+C 
Sbjct: 161 SAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACT 220

Query: 202 HVGALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSW 259
           H G  N G     I  +   +E  +   + +VD+Y + G L  A  + + M        W
Sbjct: 221 HTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVW 280

Query: 260 NSMIVGYGVH 269
            +++    +H
Sbjct: 281 RTLLAASCIH 290


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 202/566 (35%), Positives = 299/566 (52%), Gaps = 53/566 (9%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           ++ L  A+   N        AWN++I  +A     L+A   +  M+M+ + + D FTFT 
Sbjct: 236 NNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKI-QLDEFTFTS 294

Query: 95  TLKACERVKALNKCQELHGFVIRS----GYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
            +  C         +E+H + +++      +  + V+  L+  Y   G ++ A+ +F+ M
Sbjct: 295 VISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKM 354

Query: 151 PERDLVSWNSIISCYT-------------------------------QASFHLEALKLYE 179
           PERDLVSWN I+S Y                                Q  F  EALK + 
Sbjct: 355 PERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFN 414

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           RM+ +      +     + SC+ +G+L  G  LH      G+  S+  GNAL+ MYA+CG
Sbjct: 415 RMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCG 474

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            +D+A C+F  M   D +SWN+MI   G HG+G +AI  F++ML  G  PD I+FL ++ 
Sbjct: 475 VVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVIS 534

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP- 358
            CSH GLV+EG +YF  M + Y + P  +HY  ++DL  RAGK  +A EV+  S P +P 
Sbjct: 535 ACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVME-SMPFEPG 593

Query: 359 -VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
             +W  LL  C+IH N+++G  A + L +L+    G YVLL+ +YA       +A+ RKL
Sbjct: 594 APIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKL 653

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV 477
           ++  G+K  PG SWIE+ N+VH F+V D +HP+   IY  LE+++   + IGY  D   V
Sbjct: 654 MRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCV 713

Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
                S  D  E   + HSEKLA+A+G    P G ++R+ KNLR            S   
Sbjct: 714 LHDVES--DLKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVV 771

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R+++VRD  R+HHFRDG CSCGDYW
Sbjct: 772 GREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/486 (26%), Positives = 202/486 (41%), Gaps = 120/486 (24%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ-----------SLSPL---QAIFY--- 75
           S SS L+YA+ LF++I  P   A  +LI A++            S +PL    ++FY   
Sbjct: 59  SKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAM 118

Query: 76  -----YNHMLMASLS----------RPDTFTFTFTLKACERVKALNK-CQELHGFVIRSG 119
                +NH   A++           RPD +TFT  L A   V    K CQ+LH  V++SG
Sbjct: 119 ITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSG 178

Query: 120 YERCVVVSTNLMRGYA---------ANGVIEAARSVFDNMPERDL--------------- 155
                 V   L+  Y          ++ ++  AR +FD MP RD                
Sbjct: 179 TGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNND 238

Query: 156 ----------------VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
                           V+WN++IS Y     +LEA +++ +M    + LD FT   ++S 
Sbjct: 239 LDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISV 298

Query: 200 CAHVGALNMG-----IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
           CA+ G   +G      FL  +A     V ++ V NAL+  Y KCG +D A  +F++M +R
Sbjct: 299 CANAGCFRLGKEMHAYFLKTVANPAPDV-AMPVNNALITFYWKCGKVDIAQEIFNKMPER 357

Query: 255 DVLSWNSMIVGY-------------------------------GVHGRGDEAISFFKQML 283
           D++SWN ++ GY                                  G  +EA+ FF +M 
Sbjct: 358 DLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMK 417

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
           + GF P    F G +  CS  G ++ G +  H  V RY  +  +     L+ +Y R G +
Sbjct: 418 LQGFEPCDYAFAGAIISCSVLGSLKHGRQ-LHAQVVRYGYESSLSAGNALITMYARCGVV 476

Query: 344 EKALEVINTSSPSDPVLWRTLLGSCKIH----RNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           + A  +       D + W  ++ +   H    + +E+ E  +K  +  +  S      L 
Sbjct: 477 DAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRIS-----FLT 531

Query: 400 TIYACT 405
            I AC+
Sbjct: 532 VISACS 537


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 200/536 (37%), Positives = 306/536 (57%), Gaps = 35/536 (6%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQS--LSPLQAIFYYNHMLMASLSRP--DTFTFTFTL 96
           A+  F++I +P      ++   + ++  + P  A+F     L+AS S    D        
Sbjct: 144 ARKAFDEIPSPNPVIITAMASGYVRNNLVYPSLALF---RKLIASGSATAVDEAAALVAF 200

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV--IEAARSVFDNMPERD 154
            A  R+        LH  V+++G +    V   ++  YA  G   + AAR VFD M E+D
Sbjct: 201 SASARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKD 259

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMR--FEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           +VSWNS+I+ Y Q     +AL LY +M      +  +  TL  +L +CAH G +  G  +
Sbjct: 260 VVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCI 319

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H     MG  E+VYVG ++VDMY+KCG ++ A   F +++++++LSW++MI GYG+HG G
Sbjct: 320 HNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHG 379

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EA+  F +M  +G +P+ ITF+ +L  CSH GL+++G  +++ M  R+ ++PG++HYGC
Sbjct: 380 QEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGC 439

Query: 333 LVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           +VDL GRAG L++A  +I       D  +W  LL +C+IH+NVE+ EI+ K L +L+A +
Sbjct: 440 MVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELDATN 499

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
            G YVLL+ IYA     + V R R L+K+ GI+  PG+S +E+  + H F V DKSHP  
Sbjct: 500 CGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQH 559

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA----YHSEKLAIAFGLAT 507
             IY  L +++ + +  GY  +      +GS   D  E+  A     HSEKLAIAF L  
Sbjct: 560 KEIYSYLGKLLEKMQEAGYVPN------TGSVLHDLDEEEKASALHIHSEKLAIAFALMN 613

Query: 508 TPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +  G+ + ++KNLR            +    R++IVRD  R+HHF+DG CSCGDYW
Sbjct: 614 SVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 211/560 (37%), Positives = 300/560 (53%), Gaps = 56/560 (10%)

Query: 44  LFNQIQNPQT-QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
           L    Q P++ +  ++LIRA ++S  P  A+  Y H+L A L  P   T    LK+    
Sbjct: 27  LLTSGQLPRSVELHDALIRALSRSARPHLALPLYAHLLRAGL-LPTPHTLPSLLKSMALS 85

Query: 103 KALNKCQEL----HGFVIRSGYERCVVVSTNLMR-------------------------- 132
            A+     L    H   ++ G +R V+VS  L+R                          
Sbjct: 86  PAVPGAAVLALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDAST 145

Query: 133 ------GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
                  YA  G +  AR++FD MP R+ VSW+++++ Y QA    EAL+++ RM+ EDV
Sbjct: 146 FNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDV 205

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D   LV +L++CA  GAL  G ++H      G   +++ G ALVDMY+KCG +  A  
Sbjct: 206 RPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMD 265

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF RM+ ++VL+W +MI G  +HGRG EA+  F QM  +G  PD I F+G+LC C+H GL
Sbjct: 266 VFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGL 325

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTL 364
           V++G E F  MV +Y +KP I+HYGC+VDL  R G L +A E+I    P +P  ++W  L
Sbjct: 326 VDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQ-KMPMEPDALIWGAL 384

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
           +  C+ H+NVE  E   K+ + LE   +G YVLL+ IYA +         R L++  G+ 
Sbjct: 385 MAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVD 444

Query: 425 TTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF-IGYTKDESLVAVSGSS 483
            TPG S +E+   +H+F+V D SHP    I  K  EI  R +   GY  D   V +    
Sbjct: 445 KTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEE 504

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIV 531
            E   E + + HSEKLAIAF L +  D   +RI KNLR            S  Y R+++V
Sbjct: 505 EEK--EGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVV 562

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RDR R+H F++G CSC DYW
Sbjct: 563 RDRTRFHLFKEGTCSCKDYW 582



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 115/246 (46%), Gaps = 5/246 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+ +YA   +  L+ A+ LF+++      +W++++  + Q+    +A+  +  M  A   
Sbjct: 149 LITAYA--RAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARM-QAEDV 205

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           RPD       L AC +  AL + + +HG++   G +  +   T L+  Y+  G ++ A  
Sbjct: 206 RPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMD 265

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF+ M  +++++W ++I          EA+ L+ +M    +  D    + +L +C H G 
Sbjct: 266 VFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGL 325

Query: 206 LNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
           ++ G      +  + G    +     +VD+ A+ G L  A  +  +M  + D L W +++
Sbjct: 326 VDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALM 385

Query: 264 VGYGVH 269
            G   H
Sbjct: 386 AGCRFH 391


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 203/529 (38%), Positives = 304/529 (57%), Gaps = 19/529 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A+ LF+++ +    +W S+I  +AQ+     A+  +  ML +  + P+ FT +  +
Sbjct: 124 SLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRML-SDGAEPNEFTLSSLV 182

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           K C  + + N  +++H    + G    V V ++L+  YA  G +  A  VFD +  ++ V
Sbjct: 183 KCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEV 242

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I+ Y +     EAL L+ RM+ E      FT   LLSSC+ +G L  G +LH   
Sbjct: 243 SWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHL 302

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            +       YVGN L+ MYAK G++  A  VF ++ K DV+S NSM++GY  HG G EA 
Sbjct: 303 MKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAA 362

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F +M+  G  P+ ITFL +L  CSH  L++EG  YF +M  +YN++P + HY  +VDL
Sbjct: 363 QQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLM-RKYNIEPKVSHYATIVDL 421

Query: 337 YGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG L++A   I    P +P   +W  LLG+ K+H+N E+G  A + + +L+ +  G 
Sbjct: 422 LGRAGLLDQAKSFIE-EMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGT 480

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           + LLA IYA     E VA+ RK++K +G+K  P  SW+E+ N VH FV +D +HP  + I
Sbjct: 481 HTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKI 540

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           ++  E++  + K IGY  D S V +     E   E +  YHSEKLA++F L  TP G+++
Sbjct: 541 HKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEK--ELNLQYHSEKLALSFALLNTPPGSTI 598

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI+KN+R            S+   R++IVRD  R+HHF DG CSCGDYW
Sbjct: 599 RIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 155/281 (55%), Gaps = 5/281 (1%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           PD   +   LK C ++  L + + +H  V+ S ++  +V+  +L+  YA  G +E AR +
Sbjct: 72  PDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRL 131

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD MP RD+VSW S+I+ Y Q     +AL L+ RM  +    + FTL  L+  C ++ + 
Sbjct: 132 FDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASY 191

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
           N G  +H    + G   +V+VG++LVDMYA+CG L  A  VF ++  ++ +SWN++I GY
Sbjct: 192 NCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGY 251

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV-EYFHMMVSRYNLKP 325
              G G+EA++ F +M   G+ P   T+  LL  CS  G +E+G   + H+M S   L  
Sbjct: 252 ARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKL-- 309

Query: 326 GIKHYG-CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            + + G  L+ +Y ++G +  A +V +     D V   ++L
Sbjct: 310 -VGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSML 349


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 210/568 (36%), Positives = 320/568 (56%), Gaps = 34/568 (5%)

Query: 12  LNKARQAHEIHG----------EWLLNSY--AISVSSSLSYAQLLFNQIQNPQTQAWNSL 59
           +++ R   E+HG          E + N +  A +    L  A+ +F  ++     +WN+L
Sbjct: 249 ISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNAL 308

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           I   AQ+  P +A+  Y  M  + L  PD FT    L A   +K+L   +E+HGFV+R G
Sbjct: 309 IGGCAQNGDPRKALNLYIQMTYSGLV-PDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHG 367

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
            E    +  +L+  Y   G   +AR +FD M E+  VSWN++IS Y+Q     +AL L+ 
Sbjct: 368 LEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFR 427

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           ++  +        +V +L +C+   AL +G   H  A +   +E V+V  + +DMYAK G
Sbjct: 428 KLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSG 487

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            +  +  VF  ++ +D+ SWN++I  YGVHG G+E+I  F++M   G  PD  TF+G+L 
Sbjct: 488 CIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILT 547

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDP 358
            CSH GLVEEG++YF+ M + + ++P ++HY C++D+ GRAG+L+ AL +++      D 
Sbjct: 548 VCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDS 607

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
            +W +LL  C+    +EIG+I  + L++LE  +  +YV L+ +YA +   + V R R++I
Sbjct: 608 RVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMI 667

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA---DMIYRKLEEIMHRAKFIGYTKDES 475
           K  G++   G SWIE+G +VH FV  D   P +    M +RKLE+ M +   IGY  + S
Sbjct: 668 KDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCK---IGYKPNTS 724

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
            V +     E  +EK    HSEKLAI FGL  T  GT+LRI KNLR            S 
Sbjct: 725 AV-LHDVDEEKKIEKLRG-HSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSE 782

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              R++I+RD  R+HHF+DGLCSCGDYW
Sbjct: 783 VTGREIIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 162/338 (47%), Gaps = 1/338 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ AQ+LF++       +WN++I          +A   +  M M      +  T    L 
Sbjct: 185 LTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILP 244

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  +  L   +ELHG+ IR G++   +V+   +  YA  G++  A  VF +M  + + S
Sbjct: 245 ACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNS 304

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++I    Q     +AL LY +M +  +  D FT+  LL + AH+ +L  G  +H    
Sbjct: 305 WNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVL 364

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             G     ++G +L+ +Y  CG   SA  +F  M ++  +SWN+MI GY  +G  ++A+ 
Sbjct: 365 RHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALI 424

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++++  GF P  I  + +L  CS Q  +  G E  H    +  L   +      +D+Y
Sbjct: 425 LFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKET-HCYALKALLMEDVFVACSTIDMY 483

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
            ++G ++++  V +     D   W  ++ +  +H + E
Sbjct: 484 AKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGE 521



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 142/301 (47%), Gaps = 4/301 (1%)

Query: 71  QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130
            AI  +  ++  +    D FTF   +KAC         + +HG VI+ G    V V   L
Sbjct: 13  DAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNAL 72

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL-- 188
           +  Y   G ++AA  VF  MP R+LVSWNSIIS +++  F  +   +   M   + GL  
Sbjct: 73  IAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLP 132

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
           D  TLV +L  CA    + MGI +H +A ++G  E V V N+LVDMY+KCG L  A  +F
Sbjct: 133 DIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLF 192

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA-GFHPDSITFLGLLCGCSHQGLV 307
            +  +++ +SWN+MI G    G   EA + F++M M      + +T L +L  C     +
Sbjct: 193 DKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQL 252

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
              ++  H    R+  +         V  Y + G L  A  V  +        W  L+G 
Sbjct: 253 RS-LKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGG 311

Query: 368 C 368
           C
Sbjct: 312 C 312



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 153/354 (43%), Gaps = 4/354 (1%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR-PDTFTFTFTLKACERVKALNKCQELHG 113
           +WNS+I  F+++            M+       PD  T    L  C R   +     +HG
Sbjct: 99  SWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHG 158

Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
             ++ G    V V+ +L+  Y+  G +  A+ +FD    ++ VSWN++I       +  E
Sbjct: 159 LAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFE 218

Query: 174 ALKLYERMRF-EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           A  L+  M+  ED+ ++  T++ +L +C  +  L     LH  +   GF     V N  V
Sbjct: 219 AFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFV 278

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
             YAKCG L  A  VF  M  + V SWN++I G   +G   +A++ + QM  +G  PD  
Sbjct: 279 AAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWF 338

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           T   LL   +H   +  G E  H  V R+ L+        L+ LY   G+   A  + + 
Sbjct: 339 TIGSLLLASAHLKSLRYGKE-VHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDG 397

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
                 V W  ++     +   E   I  + LV  +     D  +++ + AC++
Sbjct: 398 MEEKSSVSWNAMISGYSQNGLPEDALILFRKLVS-DGFQPSDIAVVSVLGACSQ 450


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 197/531 (37%), Positives = 305/531 (57%), Gaps = 22/531 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L+YA+ +F+ +      +W ++I A+    +  + +  +  ML   +  P+  T    +
Sbjct: 277 NLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMF-PNEITMLSLV 335

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           K C    AL   + LH F +R+G+   +V++T  +  Y   G + +ARSVFD+   +DL+
Sbjct: 336 KECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLM 395

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            W+++IS Y Q +   EA  ++  M    +  +  T+V LL  CA  G+L MG ++H   
Sbjct: 396 MWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYI 455

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + G    + +  + VDMYA CG++D+A  +F+    RD+  WN+MI G+ +HG G+ A+
Sbjct: 456 DKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAAL 515

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F++M   G  P+ ITF+G L  CSH GL++EG   FH MV  +   P ++HYGC+VDL
Sbjct: 516 ELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDL 575

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG L++A E+I  S P  P   ++ + L +CK+H+N+++GE A K  + LE   +G 
Sbjct: 576 LGRAGLLDEAHELIK-SMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGY 634

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
            VL++ IYA       VA  R+ +K  GI   PG S IE+   +H+F++ D+ HPDA  +
Sbjct: 635 NVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKV 694

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA--YHSEKLAIAFGLATTPDGT 512
           Y  ++E+  + +  GYT D S V      + D  +K SA  YHSEKLA+A+GL +T  G 
Sbjct: 695 YEMIDEMREKLEDAGYTPDVSCVL----HNIDKEKKVSALNYHSEKLAMAYGLISTAPGV 750

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +RIVKNLR            S  Y R++IVRDR R+HHF++G CSC DYW
Sbjct: 751 PIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 196/402 (48%), Gaps = 22/402 (5%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQS--LSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           SL+ A+LLF++I+N    +W+++IR++ +S  L     +    H++    S     + T 
Sbjct: 174 SLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITH 233

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERC----VVVSTNLMRGYAANGVIEAARSVFDNM 150
            L     +K L K   +H +V+R+G  +C    V + T L+  Y     +  AR VFD +
Sbjct: 234 VLAELADLK-LGKA--MHAYVMRNG--KCGKSGVPLCTALIDMYVKCENLAYARRVFDGL 288

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
            +  ++SW ++I+ Y   +   E ++L+ +M  E +  +  T++ L+  C   GAL +G 
Sbjct: 289 SKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGK 348

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            LH      GF  S+ +  A +DMY KCG++ SA  VF   + +D++ W++MI  Y  + 
Sbjct: 349 LLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNN 408

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
             DEA   F  M   G  P+  T + LL  C+  G +E G ++ H  + +  +K  +   
Sbjct: 409 CIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMG-KWIHSYIDKQGIKGDMILK 467

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA- 389
              VD+Y   G ++ A  +   ++  D  +W  ++    +H +   GE A++   ++EA 
Sbjct: 468 TSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGH---GEAALELFEEMEAL 524

Query: 390 -ASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTTP 427
             +  D   +  ++AC+     +EG     K++   G   TP
Sbjct: 525 GVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGF--TP 564



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 166/362 (45%), Gaps = 14/362 (3%)

Query: 9   YVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNS-LIRAFAQSL 67
           ++ LN+ +Q   +HG +      I  SS+ SY   L          A +S LI ++ ++ 
Sbjct: 53  HINLNETQQ---LHGHF------IKTSSNCSYRVPLAALESYSSNAAIHSFLITSYIKNN 103

Query: 68  SPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
            P  A   Y +M   + +  D F     LKAC  + +    QE+HGFV+++G+   V V 
Sbjct: 104 CPADAAKIYAYM-RGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVC 162

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
             L+  Y+  G +  AR +FD +  +D+VSW+++I  Y ++    EAL L   M    V 
Sbjct: 163 NALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVK 222

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV--ESVYVGNALVDMYAKCGNLDSAF 245
                ++ +    A +  L +G  +H      G      V +  AL+DMY KC NL  A 
Sbjct: 223 PSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYAR 282

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  + K  ++SW +MI  Y      +E +  F +ML  G  P+ IT L L+  C   G
Sbjct: 283 RVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAG 342

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +E G +  H    R      +      +D+YG+ G +  A  V ++    D ++W  ++
Sbjct: 343 ALELG-KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMI 401

Query: 366 GS 367
            S
Sbjct: 402 SS 403



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 123/271 (45%), Gaps = 21/271 (7%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           LN+ Q+LHG  I++       V    +  Y++N  I +                  +I+ 
Sbjct: 56  LNETQQLHGHFIKTSSNCSYRVPLAALESYSSNAAIHSF-----------------LITS 98

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
           Y + +   +A K+Y  MR  D  +D F +  +L +C  + +  +G  +H    + GF   
Sbjct: 99  YIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGD 158

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           V+V NAL+ MY++ G+L  A  +F ++  +DV+SW++MI  Y   G  DEA+   + M +
Sbjct: 159 VFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHV 218

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL--KPGIKHYGCLVDLYGRAGK 342
               P  I  + +    +    ++ G +  H  V R     K G+     L+D+Y +   
Sbjct: 219 MRVKPSEIGMISITHVLAELADLKLG-KAMHAYVMRNGKCGKSGVPLCTALIDMYVKCEN 277

Query: 343 LEKALEVINTSSPSDPVLWRTLLGSCKIHRN 373
           L  A  V +  S +  + W  ++ +  IH N
Sbjct: 278 LAYARRVFDGLSKASIISWTAMIAA-YIHCN 307


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 194/533 (36%), Positives = 305/533 (57%), Gaps = 18/533 (3%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S S  L+ A  LF++I +     W +L   +  S    +AI  +  M+   + +PD++  
Sbjct: 157 SGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGV-KPDSYFI 215

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              L AC  V  L+  + +  ++     ++   V T L+  YA  G +E ARSVFD+M E
Sbjct: 216 VQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVE 275

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           +D+V+W+++I  Y   SF  E ++L+ +M  E++  D F++V  LSSCA +GAL++G + 
Sbjct: 276 KDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWG 335

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
             +     F+ ++++ NAL+DMYAKCG +   F VF  M+++D++  N+ I G   +G  
Sbjct: 336 ISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHV 395

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
             + + F Q    G  PD  TFLGLLCGC H GL+++G+ +F+ +   Y LK  ++HYGC
Sbjct: 396 KLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGC 455

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           +VDL+GRAG L+ A  +I    P  P  ++W  LL  C++ ++ ++ E  +K L+ LE  
Sbjct: 456 MVDLWGRAGMLDDAYRLI-CDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPW 514

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           +AG+YV L+ IY+     +  A  R ++   G+K  PG+SWIE+  +VH+F+ DDKSHP 
Sbjct: 515 NAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPL 574

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
           +D IY KLE++ +  + +G+      V       E   E+   YHSEKLA+A GL +T  
Sbjct: 575 SDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEK--ERVLGYHSEKLAVALGLISTDH 632

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G  +R+VKNLR            S    R+++VRD  R+H F +G CSC DYW
Sbjct: 633 GQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 169/325 (52%), Gaps = 10/325 (3%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT----FTFTFT 95
           Y+ LLF+  Q P    +NSLI  F  +      +F+    L  S+ +       FTF   
Sbjct: 63  YSYLLFSHTQFPNIFLYNSLINGFVNN-----HLFHETLDLFLSIRKHGLYLHGFTFPLV 117

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LKAC R  +     +LH  V++ G+   V   T+L+  Y+ +G +  A  +FD +P+R +
Sbjct: 118 LKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSV 177

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           V+W ++ S YT +  H EA+ L+++M    V  D + +V +LS+C HVG L+ G ++ + 
Sbjct: 178 VTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKY 237

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             EM   ++ +V   LV++YAKCG ++ A  VF  M ++D+++W++MI GY  +    E 
Sbjct: 238 MEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEG 297

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           I  F QML     PD  + +G L  C+  G ++ G E+   ++ R+     +     L+D
Sbjct: 298 IELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALID 356

Query: 336 LYGRAGKLEKALEVINTSSPSDPVL 360
           +Y + G + +  EV       D V+
Sbjct: 357 MYAKCGAMARGFEVFKEMKEKDIVI 381


>gi|334183024|ref|NP_174678.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806500|sp|Q9FX24.2|PPR71_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g34160
 gi|332193557|gb|AEE31678.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 207/551 (37%), Positives = 309/551 (56%), Gaps = 35/551 (6%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA--- 82
           LL   AIS    LS+A  +F  I  P T  WN++IR FA S  P  A  +Y  ML     
Sbjct: 41  LLERCAISPFGDLSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSS 100

Query: 83  --SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
             ++ R D  T +FTLKAC R    +   +LH  + R G     ++ T L+  Y+ NG +
Sbjct: 101 SSAICRVDALTCSFTLKACARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDL 160

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
            +A  +FD MP RD+ SWN++I+     +   EA++LY+RM  E +     T+V  L +C
Sbjct: 161 ISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGAC 220

Query: 201 AHVGALNMG--IFLHRIACEMGFV-ESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDV 256
           +H+G +  G  IF        G+  ++V V NA +DMY+KCG +D A+ VF +   K+ V
Sbjct: 221 SHLGDVKEGENIF-------HGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSV 273

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           ++WN+MI G+ VHG    A+  F ++   G  PD +++L  L  C H GLVE G+  F+ 
Sbjct: 274 VTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNN 333

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVE 375
           M  +  ++  +KHYGC+VDL  RAG+L +A ++I + S   DPVLW++LLG+ +I+ +VE
Sbjct: 334 MACK-GVERNMKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVE 392

Query: 376 IGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIG 435
           + EIA + + ++   + GD+VLL+ +YA     + V R R  ++S  +K  PG S+IE  
Sbjct: 393 MAEIASREIKEMGVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAK 452

Query: 436 NQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYH 495
             +H+F   DKSH     IY K++EI  + +  GY     LV       E   E +  YH
Sbjct: 453 GTIHEFYNSDKSHEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEK--ENALCYH 510

Query: 496 SEKLAIAFGLAT---TPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHF 540
           SEKLA+A+GL       + + +R++ NLR            S  Y R++IVRDRVR+H F
Sbjct: 511 SEKLAVAYGLMMMDGADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRF 570

Query: 541 RDGLCSCGDYW 551
           +DG CSC D+W
Sbjct: 571 KDGSCSCRDFW 581


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 194/529 (36%), Positives = 307/529 (58%), Gaps = 18/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++ AQ +F++I      +WN++I  +A++ +  +A+  +  M+  ++ RPD  T    + 
Sbjct: 185 IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNV-RPDESTMVSVVS 243

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC +  ++   +++H ++   G+   + +   L+  Y   G +E A  +F+ +  +D++S
Sbjct: 244 ACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVIS 303

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++I  YT  + + EAL L++ M       +  T++ +L +CAH+GA+ +G ++H    
Sbjct: 304 WNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYIN 363

Query: 218 E--MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           +   G   +     +L+DMYAKCG++++A  VF  +  R + SWN+MI G+ +HGR + A
Sbjct: 364 KRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAA 423

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
              F +M      PD ITF+GLL  CSH G+++ G   F  M   Y + P ++HYGC++D
Sbjct: 424 FDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMID 483

Query: 336 LYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           L G +G  ++A E+INT     D V+W +LL +CK++ NVE+GE   +NL+++E  + G 
Sbjct: 484 LLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGS 543

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ IYA       VA+ R L+   G+K  PG S IEI + VH+F++ DK HP    I
Sbjct: 544 YVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREI 603

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y  LEE+    +  G+  D S   V     E++ E +  +HSEKLAIAFGL +T  GT L
Sbjct: 604 YGMLEEMEVLLEEAGFVPDTS--EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKL 661

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            IVKNLR            S  Y R++I RDR R+HHFRDG+CSC DYW
Sbjct: 662 TIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 194/360 (53%), Gaps = 41/360 (11%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA  +F  IQ P    WN++ R  A S  P+ A++ Y  M+   L  P+ +TF F LK
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGL-LPNCYTFPFLLK 111

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           +C + KA  + Q++HG V++ GY+                               R VV 
Sbjct: 112 SCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVS 171

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L+ GYA+ G I +A+ +FD +P +D+VSWN++IS Y +   + EAL+L++ M   +V
Sbjct: 172 YTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNV 231

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T+V ++S+CA   ++ +G  +H    + GF  ++ + NAL+D+Y KCG +++A  
Sbjct: 232 RPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACG 291

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F  +  +DV+SWN++I GY       EA+  F++ML +G  P+ +T L +L  C+H G 
Sbjct: 292 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGA 351

Query: 307 VEEGVEYFHMMVSR--YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364
           +E G  + H+ +++    +     H   L+D+Y + G +E A +V       D +L R+L
Sbjct: 352 IEIG-RWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVF------DSILNRSL 404



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 144/344 (41%), Gaps = 36/344 (10%)

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA---ARSVFDNMP 151
           +L      K L   + +H  +I++G        + L+     +   +    A SVF+ + 
Sbjct: 5   SLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQ 64

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           E +L+ WN++   +  +S  + AL LY  M    +  + +T   LL SCA   A   G  
Sbjct: 65  EPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQ 124

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH-- 269
           +H    ++G+   +YV  +L+ MY + G L+ A  VF +   RDV+S+ ++I GY     
Sbjct: 125 IHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGY 184

Query: 270 -----------------------------GRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
                                        G   EA+  FK+M+     PD  T + ++  
Sbjct: 185 IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSA 244

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           C+    +E G +  H  +  +     +K    L+DLY + G++E A  +    S  D + 
Sbjct: 245 CAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVIS 303

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
           W TL+G    H N+    + +   +     S  D  +L+ + AC
Sbjct: 304 WNTLIGG-YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPAC 346


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 191/516 (37%), Positives = 303/516 (58%), Gaps = 26/516 (5%)

Query: 57  NSLIRAFAQSLSP-----LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK-ALNKCQE 110
           N+LIRA A S  P     L+A  ++  ML  ++  P+ FTF F LKAC  +  + +   +
Sbjct: 92  NTLIRAHATS--PIHSLRLRAAAFFPLMLRGAVV-PNKFTFPFLLKACAALPGSPDVGLQ 148

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYA--ANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
            H   ++ G+     VS  L+  Y+    G +  AR+VFD MP+   V+W+++I  Y + 
Sbjct: 149 AHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRG 208

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
               +A++L+  M+   V  D  T++ +L++   +GAL +  ++ R     G  +SV + 
Sbjct: 209 GLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLC 268

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           NAL+D  AKCG++D A  VF  M++R V+SW S+I    + GRG EA+  F++M +AG  
Sbjct: 269 NALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVP 328

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           PD + F+G+L  CSH G+V+EG  YF  M   Y ++P I+HYGC+VD++GRAG +E+A+E
Sbjct: 329 PDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAME 388

Query: 349 VINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407
            + T     +PV+WR+L+ +C+ H  +E+GE   ++L+    A   +Y++L+ ++A T+ 
Sbjct: 389 FVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQR 448

Query: 408 EEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF 467
            +  +  R+ +   GIK  PG S +E+  +VH+F+  D+SHP    IYR +EE+    + 
Sbjct: 449 WKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRR 508

Query: 468 IGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------ 521
           +G+    S V +     E+  E +  +HSEKLAIAF L  TP GT +R+VKNLR      
Sbjct: 509 VGHIAATSEVLL--DLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCH 566

Query: 522 ------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                 S  Y R+++VRDR R+H F+DG CSC D+W
Sbjct: 567 AAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 197/534 (36%), Positives = 303/534 (56%), Gaps = 20/534 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S    L  AQ++F+Q++     +WNS+I A+ Q+  P  A+ ++  M +  + 
Sbjct: 263 LINMY--SKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGI- 319

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAAR 144
           RPD  T         ++      + + GFVIR  + ++ VV+   L+  YA  G +  A 
Sbjct: 320 RPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH 379

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHV 203
           +VFD +P +D +SWN++++ YTQ     EA+  Y  M    D   +  T V ++ + +HV
Sbjct: 380 TVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHV 439

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           GAL  G+ +H    +      V+V   L+D+Y KCG L+ A  +F  + +   + WN++I
Sbjct: 440 GALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAII 499

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
              G+HGRG+EA+  FK ML      D ITF+ LL  CSH GLV+EG + F +M   Y +
Sbjct: 500 ASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGI 559

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           KP +KHYGC+VDL GRAG LEKA E++ N     D  +W  LL +CKI+ N E+G +A  
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            L+++++ + G YVLL+ IYA T+  EGV + R L +  G++ TPGWS + +G++   F 
Sbjct: 620 RLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFY 679

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             +++HP    IY++L+ +  + K +GY  D S V       ED  E+    HSE+LAIA
Sbjct: 680 TGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVY--QDIEEDEKEQILNSHSERLAIA 737

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           FG+ +TP  + +RI KNLR            S    R+++VRD  R+HHF+DG+
Sbjct: 738 FGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGI 791



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 167/343 (48%), Gaps = 8/343 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNH---MLMA 82
           L+N Y      SLS +   F+ I      +WNS+I A+ +     +A+   N    M   
Sbjct: 60  LINLYVTHGDISLSRST--FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGG 117

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
              RPD +TF   LKAC    +L   +++H  V + G+E  V V+ +L+  Y+  GV++ 
Sbjct: 118 GHLRPDFYTFPPILKAC---VSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDV 174

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VF +MP +D+ SWN++IS + Q      AL +  RM+ E V +D  T+  +L  CA 
Sbjct: 175 AHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQ 234

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
              +  G+ +H    + G    V+V NAL++MY+K G L  A  VF +M  RD++SWNS+
Sbjct: 235 SDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSI 294

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I  Y  +     A+ FFK M + G  PD +T + L    S              ++ R  
Sbjct: 295 IAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREW 354

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           L   +     LV++Y + G +  A  V +     D + W TL+
Sbjct: 355 LDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLV 397



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 151/306 (49%), Gaps = 15/306 (4%)

Query: 67  LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV 126
           LS L+++  +      SL +   F   F   +C  V A  K   LH  ++  G  + +V+
Sbjct: 2   LSLLKSVSKFYKSATTSLHKDADFNALFN--SCVNVNATKK---LHALLLVFGKSQNIVL 56

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
           ST L+  Y  +G I  +RS FD + ++++ SWNSIIS Y +   + EA+    ++ F   
Sbjct: 57  STKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL-FSMC 115

Query: 187 G-----LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           G      D +T   +L +C    +L  G  +H    +MGF + V+V  +LV +Y++ G L
Sbjct: 116 GGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVL 172

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           D A  VF  M  +DV SWN+MI G+  +G    A+    +M   G   D+IT   +L  C
Sbjct: 173 DVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVC 232

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
           +    V  GV   H+ V ++ L   +     L+++Y + G+L+ A  V +     D V W
Sbjct: 233 AQSDDVINGV-LIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSW 291

Query: 362 RTLLGS 367
            +++ +
Sbjct: 292 NSIIAA 297


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 192/538 (35%), Positives = 305/538 (56%), Gaps = 26/538 (4%)

Query: 32  ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT 91
           IS S S+   + +F  +      +WN++I   A++    + +     M  A+L +PD+FT
Sbjct: 244 ISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANL-KPDSFT 302

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
            +  L        ++K +E+HG  IR G +  V V+++L+  YA    +  +  VF  + 
Sbjct: 303 LSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLT 362

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           ERD +SWNSII+   Q     E LK + +M    +    ++   ++ +CAH+  L++G  
Sbjct: 363 ERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ 422

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           LH      GF E++++ ++LVDMYAKCGN+ +A  +F RMR RD++SW +MI+G  +HG 
Sbjct: 423 LHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGH 482

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
             +AI  F+QM   G  P+ + F+ +L  CSH GLV+E  +YF+ M   + + PG++HY 
Sbjct: 483 ALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYA 542

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
            + DL GRAG+LE+A + I    P  P   +W TLL +C++H+NV++ E     +++++ 
Sbjct: 543 AVSDLLGRAGRLEEAYDFI-CGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDP 601

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
            + G Y+LLA IY+  +  +  A+ R  ++  GI+ TP  SWIE+ N+V+ F+  D+SHP
Sbjct: 602 KNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHP 661

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY----HSEKLAIAFGL 505
             + I   +E +M   +  GY  D S V        D  E+   Y    HSE+LAI FG+
Sbjct: 662 CYEKIREAMEVLMELMEKEGYVPDTSEV------HHDVEEEQKKYLVCSHSERLAIVFGI 715

Query: 506 ATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             TP GT++R+ KNLR            S    R+++VRD  R+HHF++G CSCGDYW
Sbjct: 716 INTPAGTTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 187/454 (41%), Gaps = 96/454 (21%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LFN +  P   AW S+IR +     P +++  +  ML + L  PD   F   LKAC  + 
Sbjct: 64  LFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLY-PDHNVFPSVLKACAMLM 122

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE-------AARSVFDNMPER--- 153
            LN  + LHG++IR G +  +     LM  Y+    ++        A  V D M ER   
Sbjct: 123 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRS 182

Query: 154 ----------------DLVSWNSIISCYTQASFHLEAL---------------------- 175
                           D+ ++N  +SC ++  F  + L                      
Sbjct: 183 VRTASVLVGNQGRKVSDIEAFNYDVSCRSR-EFEAQVLEIDYKPRSEYREMEACNLGQQI 241

Query: 176 -------------KLYERMRFEDV-------------GLDGFTLVCL------------- 196
                        K++E M  +D+             GL G TL  +             
Sbjct: 242 KDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSF 301

Query: 197 -LSSCAHVGALNMGIF----LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
            LSS   + A N+ I     +H  +   G    VYV ++L+DMYAKC  +  ++ VF+ +
Sbjct: 302 TLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLL 361

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
            +RD +SWNS+I G   +G  DE + FF+QMLMA   P S +F  ++  C+H   +  G 
Sbjct: 362 TERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 421

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +  H  ++R      I     LVD+Y + G +  A ++ +     D V W  ++  C +H
Sbjct: 422 Q-LHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALH 480

Query: 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
            +  +  I +   ++ E         +A + AC+
Sbjct: 481 GHA-LDAIELFEQMKTEGIEPNYVAFMAVLTACS 513



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 1/136 (0%)

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161
           +K+ ++ Q+LH  V++      +   + L+  Y+   ++  +  +F+ +     ++W S+
Sbjct: 21  IKSRSQAQQLHAQVLKF-QASSLCNLSLLLSIYSHINLLHDSLRLFNTLHFPPALAWKSV 79

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           I CYT      ++L  +  M    +  D      +L +CA +  LN+G  LH     +G 
Sbjct: 80  IRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGL 139

Query: 222 VESVYVGNALVDMYAK 237
              +Y GNAL++MY+K
Sbjct: 140 DFDLYTGNALMNMYSK 155



 Score = 39.3 bits (90), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 1/113 (0%)

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           +Y+    L  +  +F+ +     L+W S+I  Y  HG   +++  F  ML +G +PD   
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNV 110

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
           F  +L  C+    +  G E  H  + R  L   +     L+++Y +   L+K+
Sbjct: 111 FPSVLKACAMLMDLNLG-ESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKS 162


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 198/526 (37%), Positives = 296/526 (56%), Gaps = 20/526 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP-DTFTFTFTLKAC 99
           A +LF+ +Q     AWN++I  + ++    + +  +  ML   +  P D  T      AC
Sbjct: 225 AHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGML--EVRAPFDEVTLLSVATAC 282

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
            R+   N  Q +  +    G  R   ++T L+  YA  G ++ AR +FD M  RD+V+W+
Sbjct: 283 GRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWS 342

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++IS YTQ+    EAL ++  M+  +V  +  T+V +LS+CA +GAL  G ++H      
Sbjct: 343 AMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRK 402

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
               +V +G ALVD YAKCG +  A   F  M  R+  +W ++I G   +GR  EA+  F
Sbjct: 403 DLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELF 462

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
             ML A   P  +TF+G+L  CSH  LVEEG  +F  M   Y + P I+HYGC+VDL GR
Sbjct: 463 SSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGR 522

Query: 340 AGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
           AG +++A + I  + P +P  V+WR LL +C +H+NVEIGE A+K +V L+   +G+Y+L
Sbjct: 523 AGLIDEAYQFIR-NMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYIL 581

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+  YA     +  A  RK +K  G++  PG S IE+   + +F  +D  HP    IY K
Sbjct: 582 LSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEK 641

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           + E++   K +GY  + +   +     E   + S ++HSEKLAIAFGL  +  G ++R+ 
Sbjct: 642 VHEMIENIKMVGYIPNTADARLDVDEYEK--QVSVSHHSEKLAIAFGLMKSRPGATIRLS 699

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S  Y+R++IVRDR R+HHF+DGLCSC DYW
Sbjct: 700 KNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 174/333 (52%), Gaps = 3/333 (0%)

Query: 35  SSSLSYAQLLFNQIQNPQTQA--WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S+ LSYA  LF    +P   A  +N LIR+F ++  P  A+  +  ML  +   PD  T 
Sbjct: 115 SAHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTV 174

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
             T+K+C R+  L+  + +  +  + G+     V  +L+  YA+ G + AA  +F  +  
Sbjct: 175 ANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQV 234

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           + +++WN++I+ Y +     E +++++ M       D  TL+ + ++C  +G  N+G ++
Sbjct: 235 KGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWI 294

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
              A E G + S  +  ALVDMYAKCG LD A  +F RM  RDV++W++MI GY    R 
Sbjct: 295 AEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRC 354

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EA++ F +M     +P+ +T + +L  C+  G +E G ++ H  + R +L   +     
Sbjct: 355 REALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETG-KWVHSYIRRKDLPLTVILGTA 413

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           LVD Y + G ++ A++   +    +   W  L+
Sbjct: 414 LVDFYAKCGCIKDAVKAFESMPVRNTWTWTALI 446


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 215/602 (35%), Positives = 311/602 (51%), Gaps = 77/602 (12%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+  AIS+S SL YA  LF    NP     N+LIR   +S  P  ++  +  M   S S
Sbjct: 43  LLHHCAISLSDSLDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFS 102

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD+F+F F +KA   ++++    +LH   +  G +  + V T L+  Y   G +  AR 
Sbjct: 103 PPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARK 162

Query: 146 VFDNMPE-------------------------------RDLVSWNSIISCYTQAS----- 169
           VFD MPE                               R+L+SWN +++ YT+A      
Sbjct: 163 VFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELA 222

Query: 170 --------------------------FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
                                     +  EA   +  ++ + +  +  +L  +LS+CA  
Sbjct: 223 REMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQA 282

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR-MRKRDVLSWNSM 262
           GAL  G  LH    + G    V V NAL+D Y+KCGN+  A  VF R M +R+++SW SM
Sbjct: 283 GALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSM 342

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           +    +HG G+EAI  F +M  +G  PD I F+ LL  CSH GLVE+G EYF  M   YN
Sbjct: 343 MAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYN 402

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           ++P I+HYGC+VDLYGRAG+L+KA E V     P   ++WRTLLG+C +H +V++ E   
Sbjct: 403 IEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVK 462

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           + L +L+  ++ D+VLL+  YA     +  A  R+ +    I  TPGWS IE+   ++ F
Sbjct: 463 ERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTF 522

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
           +   K +   +  Y+KL+EI+ R +  G    E +  V     E+  E S + HSEKLA+
Sbjct: 523 LAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPE-IGRVLHDIEEEEKEGSVSVHSEKLAV 581

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           AFG+A    G ++RIVKNLR            S  Y  +++VRDR R+H F+DG CSC D
Sbjct: 582 AFGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRD 641

Query: 550 YW 551
           YW
Sbjct: 642 YW 643


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 191/524 (36%), Positives = 304/524 (58%), Gaps = 16/524 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           ++ LF+ ++   + +W ++I    Q+    +A+  +  M    ++  D +TF   L AC 
Sbjct: 223 SKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAM-DQYTFGSVLTACG 281

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            ++AL + +E+H  +IRSGY   V V + L+  Y     +  A +VF  M  +++VSW +
Sbjct: 282 GLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTA 341

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  Y Q  F  EA++++  M+   +  D FTL  ++SSCA++ +L  G   H  A   G
Sbjct: 342 MLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSG 401

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            +  + V NAL+ +Y KCG+++ +  +F  M  RD +SW +++ GY   G+ +E I  F+
Sbjct: 402 LISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFE 461

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML+ G  PD++TF+ +L  CS  GLVE G +YF  M+  + + P   HY C++DL+GRA
Sbjct: 462 RMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRA 521

Query: 341 GKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+LE+A   IN    S D + W TLL SC+++ N EIG+ A ++L++L+  +   Y+LL+
Sbjct: 522 GRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLS 581

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
           +IYA       VA+ R+ ++  G +  PG+SWI+  ++V+ F  DD+S P +D IY +LE
Sbjct: 582 SIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELE 641

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           ++ H+    GY  D S V      SE    K   +HSEKLAIAFGL   P G  +R+VKN
Sbjct: 642 KLNHKMIEEGYVPDASSVLHDVEDSEKM--KMLNHHSEKLAIAFGLLFIPHGLPIRVVKN 699

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    R+++VRD VR+H F+DG CSCGD+W
Sbjct: 700 LRVCGDCHNATKYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 220/458 (48%), Gaps = 41/458 (8%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           +G   +AR+V  +K  Q +      +L++Y  S S  LS  Q +F+ + N    +WNSLI
Sbjct: 53  LGNITYARHV-FDKMPQPNSFSWNTMLSAY--SKSGDLSTMQEIFSIMPNRDGVSWNSLI 109

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             +    S ++A+  YN M+   +   +  TF+  L        ++  +++HG +++ G+
Sbjct: 110 SGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGF 169

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDN------------------------------- 149
              V V ++L+  YA  G++  A  VFD                                
Sbjct: 170 GAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHG 229

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           M ERD +SW ++I+   Q     EA+ L+  MR E + +D +T   +L++C  + AL  G
Sbjct: 230 MKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEG 289

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H +    G+  +V+VG+ALVDMY KC ++  A  VF RM  ++V+SW +M+VGYG +
Sbjct: 290 KEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQN 349

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G  +EA+  F  M   G  PD  T   ++  C++   +EEG + FH       L   I  
Sbjct: 350 GFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQ-FHCQALVSGLISFITV 408

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQLE 388
              L+ LYG+ G +E + ++ +  S  D V W  L+ G  +  +  E  ++  + LVQ  
Sbjct: 409 SNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGL 468

Query: 389 AASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGI 423
              A  ++  A + AC++    E G      ++K +GI
Sbjct: 469 KPDAVTFI--AVLSACSRAGLVERGQQYFESMLKDHGI 504



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 146/355 (41%), Gaps = 73/355 (20%)

Query: 43  LLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
           L+   + NP+T  +N+LI A+    S L  I Y  H+    + +P++F++   L A    
Sbjct: 30  LIIKSLTNPETFLYNNLINAY----SKLGNITYARHVF-DKMPQPNSFSWNTMLSA---- 80

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
                                          Y+ +G +   + +F  MP RD VSWNS+I
Sbjct: 81  -------------------------------YSKSGDLSTMQEIFSIMPNRDGVSWNSLI 109

Query: 163 SCYTQASFHLEALKLYERMRFEDV-GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           S Y      +EA+K Y  M  + V  L+  T   +L   +  G +++G  +H    + GF
Sbjct: 110 SGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGF 169

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSR------------------------------- 250
              V+VG++LVDMYAK G +  A  VF                                 
Sbjct: 170 GAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHG 229

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           M++RD +SW +MI G   +G   EA+  F+ M   G   D  TF  +L  C     ++EG
Sbjct: 230 MKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEG 289

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            E  H ++ R      +     LVD+Y +   +  A  V    +  + V W  +L
Sbjct: 290 KE-IHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAML 343


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 191/516 (37%), Positives = 302/516 (58%), Gaps = 26/516 (5%)

Query: 57  NSLIRAFAQSLSP-----LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK-ALNKCQE 110
           N+LIRA A S  P     L+A  ++  ML  ++  P+ FTF F LKAC  +  + +   +
Sbjct: 92  NTLIRAHATS--PIHSLRLRAAAFFPLMLRGAVV-PNKFTFPFLLKACAALPGSPDVGLQ 148

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYA--ANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
            H   ++ G+     VS  L+  Y+    G +  AR+VFD MP+   V+W+++I  Y + 
Sbjct: 149 AHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRG 208

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
               +A+ L+  M+   V  D  T++ +L++   +GAL +  ++ R     G  +SV + 
Sbjct: 209 GLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLC 268

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           NAL+D  AKCG++D A  VF  M++R V+SW S+I    + GRG EA+  F++M +AG  
Sbjct: 269 NALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVP 328

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           PD + F+G+L  CSH G+V+EG  YF  M   Y ++P I+HYGC+VD++GRAG +E+A+E
Sbjct: 329 PDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAME 388

Query: 349 VINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407
            + T     +PV+WR+L+ +C+ H  +E+GE   ++L+    A   +Y++L+ ++A T+ 
Sbjct: 389 FVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQR 448

Query: 408 EEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF 467
            +  +  R+ +   GIK  PG S +E+  +VH+F+  D+SHP    IYR +EE+    + 
Sbjct: 449 WKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRR 508

Query: 468 IGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------ 521
           +G+    S V +     E+  E +  +HSEKLAIAF L  TP GT +R+VKNLR      
Sbjct: 509 VGHIAATSEVLL--DLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCH 566

Query: 522 ------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                 S  Y R+++VRDR R+H F+DG CSC D+W
Sbjct: 567 AAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 191/512 (37%), Positives = 298/512 (58%), Gaps = 22/512 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W ++I  F Q+    +A+  ++ M    + RP+ FT++  L A   +       E+H  
Sbjct: 368 SWTAMISGFLQNDGKEEAVGLFSEMKRKGV-RPNEFTYSVILTALPVISP----SEVHAQ 422

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           V+++ YER   V T L+  Y   G ++ A  VF  +  +D+V+W+++++ Y QA     A
Sbjct: 423 VVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAA 482

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALVD 233
           +K++  +    V  + FT   +L+ CA   A +  G   H  A +     S+ V +AL+ 
Sbjct: 483 IKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLT 542

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MYAK G+++SA  VF R R++D++SWNSMI GY  HG+  +A+  FK+M       DS+T
Sbjct: 543 MYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVT 602

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NT 352
           F+G+   C+H GLVEEG +YF +MV    + P  +H  C+VDLY RAG+LEKA++VI N 
Sbjct: 603 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNM 662

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
            + +   +WRT+L +C++H+  E+G +A + ++ +    +  YVLL+ +YA + D +  A
Sbjct: 663 PNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERA 722

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           + RKL+    +K  PG+SWIE+ N+ + F+  D+SHP  D IY KLE++  R K +GY  
Sbjct: 723 KVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEP 782

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           D S V       ++  E   A HSE+LAIAFGL  TP G+ L I+KNLR           
Sbjct: 783 DTSYVL--QDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHVVIKL 840

Query: 522 -SIAYSRDLIVRDRVRYHHF-RDGLCSCGDYW 551
            +    R+++VRD  R+HHF  DG+CSCGD+W
Sbjct: 841 IAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 137/277 (49%), Gaps = 7/277 (2%)

Query: 30  YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYY---NHMLMASLSR 86
           +  + SS L YA  LF++  +   +++ SL+  F++     +A   +    H+ M     
Sbjct: 39  FGAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGM----E 94

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
            D   F+  LK    +      ++LH   I+ G+   V V T+L+  Y      +  R+V
Sbjct: 95  MDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNV 154

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD M ER++V+W ++IS Y + S + E L L+ RM+ E    + FT    L   A  G  
Sbjct: 155 FDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVG 214

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
             G+ +H +  + G  +++ V N+L+++Y KCGN+  A  +F +   + V++WNSMI GY
Sbjct: 215 GRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGY 274

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
             +G   EA+  F  M +        +F  ++  C++
Sbjct: 275 AANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCAN 311



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 149/324 (45%), Gaps = 7/324 (2%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F++++      W +LI  +A++    + +  +  M     ++P++FTF   L       
Sbjct: 154 VFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRM-QDEGTQPNSFTFAAALGVLAEEG 212

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
              +  ++H  V+++G ++ + VS +L+  Y   G +  AR +FD    + +V+WNS+IS
Sbjct: 213 VGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMIS 272

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y      LEAL ++  MR   V L   +   ++  CA++  L     LH    + GFV 
Sbjct: 273 GYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVF 332

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
              +  AL+  Y+KC  +  A  +F       +V+SW +MI G+  +   +EA+  F +M
Sbjct: 333 DQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEM 392

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
              G  P+  T+  +L         E      H  V + N +        L+D Y + GK
Sbjct: 393 KRKGVRPNEFTYSVILTALPVISPSE-----VHAQVVKTNYERSSTVGTALLDAYVKLGK 447

Query: 343 LEKALEVINTSSPSDPVLWRTLLG 366
           +++A +V +     D V W  +L 
Sbjct: 448 VDEAAKVFSGIDNKDIVAWSAMLA 471



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 155/326 (47%), Gaps = 12/326 (3%)

Query: 6   HARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
           HA+ V  N  R +    G  LL++Y       +  A  +F+ I N    AW++++  +AQ
Sbjct: 420 HAQVVKTNYERSS--TVGTALLDAYV--KLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQ 475

Query: 66  SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA-LNKCQELHGFVIRSGYERCV 124
           +     AI  ++ +    + +P+ FTF+  L  C    A + + ++ HGF I+S  +  +
Sbjct: 476 AGETEAAIKIFSELTKGGV-KPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSL 534

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
            VS+ L+  YA  G IE+A  VF    E+DLVSWNS+IS Y Q    ++AL +++ M+  
Sbjct: 535 CVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR 594

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA-LVDMYAKCGNLDS 243
            V +D  T + + ++C H G +  G     I      +      N+ +VD+Y++ G L+ 
Sbjct: 595 KVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 654

Query: 244 AFCVFSRMRK-RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
           A  V   M        W +++    VH +  E      + ++A    DS  ++ L    +
Sbjct: 655 AMKVIDNMPNLAGSTIWRTILAACRVH-KKTELGRLAAEKIIAMIPEDSAAYVLLSNMYA 713

Query: 303 HQGLVEEGVEYFHMMVSRYNLK--PG 326
             G  +E  +   +M  R N+K  PG
Sbjct: 714 ESGDWQERAKVRKLMNER-NVKKEPG 738



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 116/233 (49%), Gaps = 1/233 (0%)

Query: 133 GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192
           G A++  +  A ++FD  P+RD  S+ S++  +++     EA +L+  ++   + +D   
Sbjct: 40  GAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSI 99

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
              +L   A +     G  LH    + GF++ V VG +LVD Y K  N      VF  M+
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMK 159

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           +R+V++W ++I GY  +   +E ++ F +M   G  P+S TF   L   + +G+   G++
Sbjct: 160 ERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ 219

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             H +V +  L   I     L++LY + G + KA  + + +     V W +++
Sbjct: 220 -VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 271


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 206/554 (37%), Positives = 303/554 (54%), Gaps = 25/554 (4%)

Query: 19  HEIHGEWLLNSYAISVSSSL---SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFY 75
           H + GE  + +  I V   L   + A  +F  +       WNS+I A  Q      A+  
Sbjct: 197 HGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVEL 256

Query: 76  YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRG-Y 134
           + H +M S   PD  T      A  +       + +H +V R G++   +++ N M   Y
Sbjct: 257 F-HGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMY 315

Query: 135 AANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF--T 192
           A    I+AA+ VFDN+P+RD+VSWN++I+ Y Q     EA+++Y  M   + GL     T
Sbjct: 316 AKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHE-GLKPIQGT 374

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
            V +L + +++G L  G+ +H ++ + G    VYV   L+D+YAKCG L  A  +F  M 
Sbjct: 375 FVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMP 434

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           +R    WN++I G GVHG G +A+S F QM      PD +TF+ LL  CSH GLV++G  
Sbjct: 435 RRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRS 494

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIH 371
           +F +M + Y + P  KHY C+VD+ GRAG+L++A E I +     D  +W  LLG+C+IH
Sbjct: 495 FFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIH 554

Query: 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSW 431
            NVE+G++A +NL +L+  + G YVL++ +YA     +GV   R L++   ++ TPGWS 
Sbjct: 555 GNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSS 614

Query: 432 IEIGNQVHKFV--VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
           +E+   V  F      + HP  + I R L +++ + K  GY  D S V       ED  E
Sbjct: 615 MEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVL--QDVEEDEKE 672

Query: 490 KSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRY 537
           +    HSE+LAIAFG+  TP GT L I KNLR            S    R++IVRD  R+
Sbjct: 673 QILNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRF 732

Query: 538 HHFRDGLCSCGDYW 551
           HHF+DG CSCGD+W
Sbjct: 733 HHFKDGHCSCGDFW 746



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 156/322 (48%), Gaps = 7/322 (2%)

Query: 47  QIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKACERVKAL 105
            +Q P     NSLI AF+++  P  A+     +L  +   RPD+FTF   ++A     + 
Sbjct: 26  HLQVPPLLLVNSLIAAFSRAALPRLALPLLRRLLAGAHPLRPDSFTFPPLVRAAPGPAS- 84

Query: 106 NKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
               +LH   +R G     V  S +L+  Y   G +  A  VFD MPERD+ +WN+++S 
Sbjct: 85  --AAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSG 142

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
             + +   +A+ L  RM  E V  D  TL  +L  C  +G   + + +H  A + G    
Sbjct: 143 LCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGE 202

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           ++V NAL+D+Y K G L  A  VF  M  RD+++WNS+I      G+   A+  F  M+ 
Sbjct: 203 LFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMME 262

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKL 343
           +G  PD +T + L    +  G  E G +  H  V R     G I     +VD+Y +  K+
Sbjct: 263 SGVCPDVLTLVSLASAVAQCG-DELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKI 321

Query: 344 EKALEVINTSSPSDPVLWRTLL 365
           + A +V +     D V W TL+
Sbjct: 322 DAAQKVFDNLPDRDVVSWNTLI 343



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 17/220 (7%)

Query: 212 LHRIACEMGFV-ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
           LH  A  +G +  +V+   +LV  Y + G +  A+ VF  M +RDV +WN+M+ G   + 
Sbjct: 88  LHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNT 147

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI--K 328
           R  +A++   +M+  G   D++T   +L  C     V  G     +++  Y +K G+  +
Sbjct: 148 RAADAVTLLGRMVGEGVAGDAVTLSSVLPMC-----VVLGDRALALVMHVYAVKHGLSGE 202

Query: 329 HYGC--LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS----CKIHRNVEIGEIAMK 382
            + C  L+D+YG+ G L +A  V    +  D V W +++ +     K+   VE+    M+
Sbjct: 203 LFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMME 262

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
           + V  +  +    V LA+  A   DE G       ++  G
Sbjct: 263 SGVCPDVLT---LVSLASAVAQCGDELGAKSVHCYVRRRG 299


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 199/530 (37%), Positives = 296/530 (55%), Gaps = 31/530 (5%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           LS A+ LF ++      AW +++  F Q+    +A   +  M        +  ++   + 
Sbjct: 262 LSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM-----PEKNEVSWNAMIA 316

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
              + + + K +EL   +      R       ++ GYA  G I+ A+ +FD MP+RD +S
Sbjct: 317 GYVQSQQIEKARELFDQMP----SRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCIS 372

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++IS Y Q+    EAL L+ +M+ +   L+   L C LSSCA + AL +G  LH    
Sbjct: 373 WAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLV 432

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + GF      GNAL+ MY KCG+++ AF VF  + ++D++SWN+MI GY  HG G EA++
Sbjct: 433 KAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALA 492

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+ M M    PD +T +G+L  CSH GLV++G+EYF+ M   Y +    KHY C++DL 
Sbjct: 493 LFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLL 551

Query: 338 GRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GRAG+L++AL ++  S P   D   W  LLG+ +IH + E+GE A + + ++E  ++G Y
Sbjct: 552 GRAGRLDEALNLMK-SMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMY 610

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ +YA +     V   R  ++  G+K  PG+SW+EI N+ H F V D SHP+A+ IY
Sbjct: 611 VLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIY 670

Query: 456 RKLEEIMHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
             LEE+    K  G+     LV   V     E  L+    YHSEKLA+AFG+ + P G  
Sbjct: 671 AYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLK----YHSEKLAVAFGILSIPPGRP 726

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R++KNLR            S    R +IVRD  R+HHF +G CSCGDYW
Sbjct: 727 IRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 166/368 (45%), Gaps = 49/368 (13%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           + +LS A+ LFNQ+      +WN+++  FAQ+    +A   ++ ML+      +  ++  
Sbjct: 135 NGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV-----KNEISWNG 189

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTN-LMRGYAANGVIEAARSVFDNMPER 153
            L A  +   +   + L  F  +  +E   +VS N LM GY     ++ ARS+FD MP R
Sbjct: 190 LLSAYVQNGRIEDARRL--FDSKMDWE---IVSWNCLMGGYVRKKRLDDARSLFDRMPVR 244

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           D +SWN +I+ Y Q     EA +L+E +   DV    F    ++S     G L+      
Sbjct: 245 DKISWNIMITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEAT--- 297

Query: 214 RIACEM-------------GFVESVYVG-----------------NALVDMYAKCGNLDS 243
           RI  EM             G+V+S  +                  N +V  YA+CGN+D 
Sbjct: 298 RIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQ 357

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F  M +RD +SW +MI GY   G+ +EA+  F +M   G   +       L  C+ 
Sbjct: 358 AKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAE 417

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
              +E G +  H  + +   + G      L+ +YG+ G +E+A +V    +  D V W T
Sbjct: 418 IAALELGKQ-LHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNT 476

Query: 364 LLGSCKIH 371
           ++     H
Sbjct: 477 MIAGYARH 484



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 148/304 (48%), Gaps = 28/304 (9%)

Query: 125 VVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           ++S N+M  GY  NG + AAR++F+ MPE+D+VSWN+++S + Q  F  EA K++++M  
Sbjct: 122 LISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV 181

Query: 184 E-DVGLDGFTLVCLLSSCAHVGALNMG--IFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           + ++  +G     LLS+    G +     +F  ++  E      +   N L+  Y +   
Sbjct: 182 KNEISWNG-----LLSAYVQNGRIEDARRLFDSKMDWE------IVSWNCLMGGYVRKKR 230

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           LD A  +F RM  RD +SWN MI GY  +G   EA   F+++ +     D   +  ++ G
Sbjct: 231 LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR----DVFAWTAMVSG 286

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
               G+++E    F  M  +  +      +  ++  Y ++ ++EKA E+ +     +   
Sbjct: 287 FVQNGMLDEATRIFEEMPEKNEVS-----WNAMIAGYVQSQQIEKARELFDQMPSRNTSS 341

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT-KDEEGVARTRKLIK 419
           W T++       N++  +I    + Q +  S   +  + + YA + + EE +    K+ +
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCIS---WAAMISGYAQSGQSEEALHLFIKMKR 398

Query: 420 SNGI 423
             GI
Sbjct: 399 DGGI 402



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 32/165 (19%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM------ 282
           N  +  Y + G  +SA  VF+ MR+R  +++N+MI GY  + + D A   F++M      
Sbjct: 64  NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLI 123

Query: 283 ----LMAGF-----------------HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
               +++G+                   D +++  +L G +  G VEE  + F  M+ + 
Sbjct: 124 SWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKN 183

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            +      +  L+  Y + G++E A  + ++    + V W  L+G
Sbjct: 184 EIS-----WNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMG 223


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 193/512 (37%), Positives = 307/512 (59%), Gaps = 23/512 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
            W ++I  F Q+ +  +A+  +  M    + RP+ FT++  L      K  +   +LH  
Sbjct: 375 TWTAMIGGFVQNNNNKKAVDLFCQMSREGV-RPNHFTYSTVLAG----KPSSLLSQLHAQ 429

Query: 115 VIRSGYERCVVVSTNLMRGYAANG-VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
           +I++ YE+   V+T L+  Y   G V+E+AR VF ++P +D+V+W+++++   Q     +
Sbjct: 430 IIKAYYEKVPSVATALLDAYVKTGNVVESAR-VFYSIPAKDIVAWSAMLTGLAQTRDSEK 488

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALV 232
           A++++ ++  E V  + +T   ++++C+   A +  G  +H  A + G   ++ V +AL+
Sbjct: 489 AMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALL 548

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
            MY+K GN++SA  VF+R  +RD++SWNSMI GYG HG   +A+  F+ M   G   D +
Sbjct: 549 TMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDV 608

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TF+G+L  C+H GLVEEG +YF++M+  Y++    +HY C+VDLY RAG  +KA+++IN 
Sbjct: 609 TFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIING 668

Query: 353 SS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
              P+ P +WRTLL +C++HRN+E+G++A + LV L+   A  YVLL+ I+A   + E  
Sbjct: 669 MPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEK 728

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
           A  RKL+    +K   G SWIEI N++  F+  D SHP +D++Y KLEE+  + K +GY 
Sbjct: 729 AHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQ 788

Query: 472 KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
            D + V       E+  E   + HSE+LAIA+GL   P G  ++I KNLR          
Sbjct: 789 PDTNYVF--HDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIE 846

Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             S+   R LIVRD  R+HHF+ G+CSCG YW
Sbjct: 847 LISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 158/347 (45%), Gaps = 25/347 (7%)

Query: 32  ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT 91
           IS+ S   YA  LF++        +N L+  F+++    +A+  +  +  + L   D  T
Sbjct: 48  ISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLG-VDGLT 106

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
            +  LK C  +      +++H   ++SG+   V V T+L+  Y      E  R +FD M 
Sbjct: 107 LSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMG 166

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
            +++VSW S++S Y +   + E + L  +M+ E V  +GFT   +L + A    +  G+ 
Sbjct: 167 IKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQ 226

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H +  + GF  + +V NAL+ MY K   +  A  VF  M  RD ++WN MI GY   G 
Sbjct: 227 VHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGF 286

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ-----------GLVEEGVEYFHMMVSR 320
             E    F +M +AG       F   L  CS Q           G+V+ G E+   + + 
Sbjct: 287 YLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT- 345

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLG 366
                       L+  Y +   +++A ++ + +  + + V W  ++G
Sbjct: 346 -----------ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIG 381


>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 794

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 204/525 (38%), Positives = 302/525 (57%), Gaps = 29/525 (5%)

Query: 48  IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL-SRPDTFTFTFTLKACERVKALN 106
           +  P T   N+ +R  A S  P +++      L+ +L  RPD  + +F LKA  R    +
Sbjct: 69  LPTPATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAH 128

Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
              +LH  V+R G    V + T L+  YA  G + +AR VFD M  RD+ +WNS+++   
Sbjct: 129 TTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLA 188

Query: 167 QASFHLEALKLYERM--RFEDVG----LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           Q +    AL L+ R+   F+++      +  T+V  LS+CA +G L  G+++H  A   G
Sbjct: 189 QGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFG 248

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD--VLSWNSMIVGYGVHGRGDEAISF 278
              +V V N+L+DMY+KCG+L  A  VF  ++  D  ++S+N+ I  + +HG G +A+  
Sbjct: 249 LDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRL 308

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M      PD +T+L +LCGC+H GLV++G+  F+ M     + P +KHYG +VDL G
Sbjct: 309 FDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSM----RVAPNMKHYGTIVDLLG 363

Query: 339 RAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
           RAG+L +A + VI+   P+D VLW+TLLG+ K+H  VE+ E+A   L +L +   GDYVL
Sbjct: 364 RAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVL 423

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ +YA       V R R  ++SN ++  PG+S+ EI   +HKF+  DK HP    IYR 
Sbjct: 424 LSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRA 483

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           LE+I+ R   +GY  + S   V     E+  + +  YHSEKLAIAFGL  TP G +LR++
Sbjct: 484 LEDIVSRISELGYEPETS--NVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVI 541

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           KNLR            S AY R +++RDR R+H F DG CSC DY
Sbjct: 542 KNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDY 586


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/536 (36%), Positives = 309/536 (57%), Gaps = 19/536 (3%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ--SLSPLQAIFYYNHMLMASLSRPD 88
           A+S   +++YA+ +F QI +P   +WNSLI+ ++Q  +LS  + IF +  +       P+
Sbjct: 33  ALSPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSK-EPIFLFKKLTETGYPVPN 91

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
           +FT  F LKAC  V A  +  ++H  V++ G+   + V T+L+  Y     I  AR VF+
Sbjct: 92  SFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFE 151

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            MP R+LV+W ++IS + +     EA++L+  M+   +  D  TLV ++S+CA  GAL++
Sbjct: 152 EMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDI 211

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G +LH    +   +  + +  ALVDMYAKCG ++ A  VF  M  +D  +W+SMI+G+  
Sbjct: 212 GYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAY 271

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           HG   +AI  F+QML     PD +TFL +L  C+H GLV  G  ++ +M+  + ++P ++
Sbjct: 272 HGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLML-EFGIEPSVE 330

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
           HYGC VDL  R+G +E+A  +  T   P +   WR+LL  CK  + + +GEI  + L++L
Sbjct: 331 HYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLEL 390

Query: 388 EAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKS 447
           E  +A +Y++++ +Y+     E ++  RK++K   IK  PG S IE+   VH+FV+ D+S
Sbjct: 391 EPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQS 450

Query: 448 HPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLAT 507
           HP+  M+   +EE+  R +  GY    S V       E   E + + HSE+ AIA+GL  
Sbjct: 451 HPEVKMLREFMEEMSMRVRDSGYRPSISDVLHKVVDEEK--ECALSEHSERFAIAYGLLK 508

Query: 508 TPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           T     +R+VKNLR            S  Y R++IVRDRVR+H F  G CSC D+W
Sbjct: 509 TRAPIVIRVVKNLRVCVDCHEVIKIISKLYEREIIVRDRVRFHKFIKGTCSCKDFW 564


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 198/534 (37%), Positives = 305/534 (57%), Gaps = 22/534 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+ +A  +F++ +      WN++ RA A +      +  Y  M    +   + FT+T+ L
Sbjct: 124 SVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPS-NRFTYTYVL 182

Query: 97  KACE----RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
           KAC      +  L K +E+H  ++R GYE  V V T L+  YA  G +  A SVF  MP+
Sbjct: 183 KACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPD 242

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFE--DVGLDGFTLVCLLSSCAHVGALNMGI 210
           +++VSW+++I+CY +    ++AL+L++ M  E  D   +  T+V +L +CA + AL  G 
Sbjct: 243 KNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGK 302

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H      G   ++ V N L+ MY +CG + +   VF  M+KRDV+SWNS+I  YG+HG
Sbjct: 303 LVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHG 362

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
            G +AI  F+ M+  G  P  ITF+ +LC CSH GLVEE    F  M+++Y + P ++HY
Sbjct: 363 LGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHY 422

Query: 331 GCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
            C+VD+ GRA +L++A+E+I N      P +W +LLGSC+IH NVE+ E A   L +LE 
Sbjct: 423 ACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEP 482

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
            +AG+YVLL+ IYA ++    V R RK ++S G++  P  SWIE+  +++  V  ++ +P
Sbjct: 483 KNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNP 542

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
             + +   L  ++   K  GY    ++V       E   E+    HS KLA+AFGL  T 
Sbjct: 543 QIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEK--ERIVLGHSGKLAVAFGLINTS 600

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            G  +RI  NLR            S   +R++++RD  R+H F+DG+CSCGDYW
Sbjct: 601 KGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 162/358 (45%), Gaps = 16/358 (4%)

Query: 22  HGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNS--LIRAFAQSLSPLQAIFYYNHM 79
           HG +   +Y    SS +S+  L  +       ++ N+  LI++  +  +  QA+      
Sbjct: 12  HGPF--QNYPCRYSSHVSFVSLNASGYPTKDIKSNNNDDLIQSLCRGGNLKQAV-----Q 64

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           L+     P   TF   + +C    +L+   ++H  ++ SG ++   ++T L+  Y   G 
Sbjct: 65  LLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGS 124

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           ++ A  VFD   E+ +  WN+I      AS   + L LY +M +  +  + FT   +L +
Sbjct: 125 VDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKA 184

Query: 200 CA----HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           C      +  L  G  +H      G+   V+V   L+D+YA+ G +  A  VF  M  ++
Sbjct: 185 CVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKN 244

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH--PDSITFLGLLCGCSHQGLVEEGVEY 313
           ++SW++MI  Y  +    +A+  F+ M++      P+ IT + +L  C+    +E G + 
Sbjct: 245 IVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHG-KL 303

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            H  V R  L   +     L+ +YGR G++     V +     D + W +L+    +H
Sbjct: 304 VHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMH 361



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 8/219 (3%)

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           T   L++SC    +L+ G+ +H      G  +  Y+   L++MY   G++D A  VF   
Sbjct: 76  TFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDET 135

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL----V 307
           R++ +  WN++     +  RG++ +  + QM   G   +  T+  +L  C    L    +
Sbjct: 136 REKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPL 195

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
            +G E  H  + R+  +  +     L+D+Y R G +  A  V       + V W  ++ +
Sbjct: 196 RKGKE-IHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMI-A 253

Query: 368 CKIHRNVEIGEIAMKNLVQLEAASA--GDYVLLATIYAC 404
           C     + +  + +  ++ LEA         +++ + AC
Sbjct: 254 CYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQAC 292


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 201/555 (36%), Positives = 314/555 (56%), Gaps = 23/555 (4%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ 71
           +  ++Q   +    LL S   +   SLSYA+ +F++I +P T A+N++IR+ ++   P  
Sbjct: 12  IKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSRFF-PSH 70

Query: 72  AIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131
           ++ Y+  M    +   D FTF F LKAC R++ +N    LH  +++ G    + V   L+
Sbjct: 71  SLSYFFSMRSNGIPL-DNFTFPFVLKACSRLQ-IN--LHLHSLIVKYGLGSDIFVQNALI 126

Query: 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDG 190
             Y   G +E A  VFD M ERD VSW+++I+ +    +  EAL L+E+M+ ED V  D 
Sbjct: 127 CVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDE 186

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
            T++ ++S+ +H+G L +G ++      +GF  SV +G AL+DM+++CG++D +  VF +
Sbjct: 187 VTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEK 246

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           M  R+VL+W ++I G G+HGR  EA++ F  M  +G  PD +TF G+L  CSH GLV+EG
Sbjct: 247 MAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEG 306

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSC 368
            + F  +   Y + P + HYGC+VD+ GRAG L +A + +    P  P  ++WRTLLG+C
Sbjct: 307 WDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVER-MPMKPNSIIWRTLLGAC 365

Query: 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPG 428
             H N+ + E     + ++ ++  GD VLL+ +Y         A  R  ++   I   PG
Sbjct: 366 VNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPG 425

Query: 429 WSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFL 488
            S I +   +H+FV  D SHP ++ I + L  I+   +  GY        V     E+  
Sbjct: 426 CSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTK--NVLHDIEEEER 483

Query: 489 EKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVR 536
           E S +YHSEKLA+AF + +  D  ++RI+KNLR            S+ + R +I+RDR R
Sbjct: 484 EHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNR 543

Query: 537 YHHFRDGLCSCGDYW 551
           +HHF  GLCSC DYW
Sbjct: 544 FHHFEKGLCSCHDYW 558


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/529 (37%), Positives = 303/529 (57%), Gaps = 20/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A++ FN +      AWN++I  ++Q    ++A+  +  M    +    T T +  LK
Sbjct: 410 LEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQT-TLSTILK 468

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +   ++ ++ C+++HG  ++SG+   + V  +L+  Y     +E A  +F+     DLVS
Sbjct: 469 STAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVS 528

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           + S+I+ Y Q     EALKL+  M+  ++  D F    LL++CA++ A   G  LH    
Sbjct: 529 FTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL 588

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + GFV  ++ GN+LV+MYAKCG++D A   FS + +R ++SW++MI G   HG G +A+ 
Sbjct: 589 KYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQ 648

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QML  G  P+ IT + +L  C+H GLV E   YF  M   +  KP  +HY C++DL 
Sbjct: 649 LFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLL 708

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAGK+ +A+E++N     ++  +W  LLG+ +IH++VE+G  A + L  LE   +G +V
Sbjct: 709 GRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHV 768

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LLA IYA     E VA  R+L++ + +K  PG SWIE+ ++V+ F+V D+SH  +  IY 
Sbjct: 769 LLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYA 828

Query: 457 KLEEIMHRAKFIGYTK--DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           KL+E+       GY    +  L  V  S  E  L     +HSEKLA+AFGL  TP G  +
Sbjct: 829 KLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLL----YHHSEKLAVAFGLIATPQGAPI 884

Query: 515 RIVKNLR-------SIAY-----SRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+ KNLR       +  Y     SR++IVRD  R+HHF+DG CSCGDYW
Sbjct: 885 RVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 210/427 (49%), Gaps = 31/427 (7%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S   +  YA+ L ++   P   +W++LI  +AQ+     A+  ++ M +  + 
Sbjct: 97  LINLY--SKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGV- 153

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           + + FTF+  LKAC  VK L   +++HG V+ SG+E  V V+  L+  YA       ++ 
Sbjct: 154 KCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKR 213

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD +PER++VSWN++ SCY Q  F  EA+ L+  M    +  + F+L  ++++C  +  
Sbjct: 214 LFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRD 273

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
            + G  +H    ++G+    +  NALVDMYAK G+L  A  VF ++++ D++SWN++I G
Sbjct: 274 SSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAG 333

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
             +H   ++A+    QM  +G  P+  T    L  C+  GL E G +  H  + + +++ 
Sbjct: 334 CVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQ-LHSSLMKMDMES 392

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVEIGEIAMKNL 384
            +     LVD+Y +   LE A    N     D + W  ++ G  +   ++E    A+   
Sbjct: 393 DLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDME----ALSLF 448

Query: 385 VQLEAASAG-DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           V++     G +   L+TI                     +K+T G   + +  QVH   V
Sbjct: 449 VEMHKEGIGFNQTTLSTI---------------------LKSTAGLQVVHVCRQVHGLSV 487

Query: 444 DDKSHPD 450
               H D
Sbjct: 488 KSGFHSD 494



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 185/370 (50%), Gaps = 7/370 (1%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ A  +F +I+ P   +WN++I          QA+     M  + +  P+ FT +  LK
Sbjct: 309 LADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGIC-PNIFTLSSALK 367

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  +      ++LH  +++   E  + VS  L+  Y+   ++E AR  F+ +PE+DL++
Sbjct: 368 ACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA 427

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN+IIS Y+Q    +EAL L+  M  E +G +  TL  +L S A +  +++   +H ++ 
Sbjct: 428 WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSV 487

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + GF   +YV N+L+D Y KC +++ A  +F      D++S+ SMI  Y  +G+G+EA+ 
Sbjct: 488 KSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALK 547

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M      PD      LL  C++    E+G +  H+ + +Y     I     LV++Y
Sbjct: 548 LFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQ-LHVHILKYGFVLDIFAGNSLVNMY 606

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDY 395
            + G ++ A    +  +    V W  ++G    H +   G  A++   Q+  E  S    
Sbjct: 607 AKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGH---GRQALQLFNQMLKEGVSPNHI 663

Query: 396 VLLATIYACT 405
            L++ + AC 
Sbjct: 664 TLVSVLGACN 673



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 137/294 (46%), Gaps = 11/294 (3%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P + +++  L  C   K+L    ++H  + +SG      +  +L+  Y+       AR +
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
            D   E DLVSW+++IS Y Q      AL  +  M    V  + FT   +L +C+ V  L
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            +G  +H +    GF   V+V N LV MYAKC     +  +F  + +R+V+SWN++   Y
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC-----SHQGLVEEGVEYFHMMVSRY 321
                  EA+  F +M+++G  P+  +   ++  C     S +G +  G    +++   Y
Sbjct: 234 VQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHG----YLIKLGY 289

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
           +  P   +   LVD+Y + G L  A+ V       D V W  ++  C +H + E
Sbjct: 290 DWDPFSAN--ALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHE 341


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/529 (37%), Positives = 303/529 (57%), Gaps = 20/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A++ FN +      AWN++I  ++Q    ++A+  +  M    +    T T +  LK
Sbjct: 383 LEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQT-TLSTILK 441

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +   ++ ++ C+++HG  ++SG+   + V  +L+  Y     +E A  +F+     DLVS
Sbjct: 442 STAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVS 501

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           + S+I+ Y Q     EALKL+  M+  ++  D F    LL++CA++ A   G  LH    
Sbjct: 502 FTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL 561

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + GFV  ++ GN+LV+MYAKCG++D A   FS + +R ++SW++MI G   HG G +A+ 
Sbjct: 562 KYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQ 621

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QML  G  P+ IT + +L  C+H GLV E   YF  M   +  KP  +HY C++DL 
Sbjct: 622 LFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLL 681

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAGK+ +A+E++N     ++  +W  LLG+ +IH++VE+G  A + L  LE   +G +V
Sbjct: 682 GRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHV 741

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LLA IYA     E VA  R+L++ + +K  PG SWIE+ ++V+ F+V D+SH  +  IY 
Sbjct: 742 LLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYA 801

Query: 457 KLEEIMHRAKFIGYTK--DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           KL+E+       GY    +  L  V  S  E  L     +HSEKLA+AFGL  TP G  +
Sbjct: 802 KLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLL----YHHSEKLAVAFGLIATPQGAPI 857

Query: 515 RIVKNLR-------SIAY-----SRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+ KNLR       +  Y     SR++IVRD  R+HHF+DG CSCGDYW
Sbjct: 858 RVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 196/427 (45%), Gaps = 58/427 (13%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S      YA+ L ++   P   +W++LI  +AQ+     A+  ++ M +  + 
Sbjct: 97  LINLY--SKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGV- 153

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           + + FTF+  LKAC  VK L   +++HG V+ SG+E  V V+  L+  YA       ++ 
Sbjct: 154 KCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKR 213

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD +PER++VSWN++ SCY Q  F  EA+ L+  M    +  + F+L  ++++C  +  
Sbjct: 214 LFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRD 273

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
            + G  +H    ++G+    +  NALVDMYAK G+L  A  VF ++++ D++SWN++I G
Sbjct: 274 SSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAG 333

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
             +H   ++A+    QM                                H  + + +++ 
Sbjct: 334 CVLHEHHEQALELLGQM----------------------------KRQLHSSLMKMDMES 365

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVEIGEIAMKNL 384
            +     LVD+Y +   LE A    N     D + W  ++ G  +   ++E    A+   
Sbjct: 366 DLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDME----ALSLF 421

Query: 385 VQLEAASAG-DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           V++     G +   L+TI                     +K+T G   + +  QVH   V
Sbjct: 422 VEMHKEGIGFNQTTLSTI---------------------LKSTAGLQVVHVCRQVHGLSV 460

Query: 444 DDKSHPD 450
               H D
Sbjct: 461 KSGFHSD 467



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 177/359 (49%), Gaps = 19/359 (5%)

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC-------ERVKALNKCQ 109
           N+L+  +A+      AI  +       + +PD  ++   +  C       + ++ L + +
Sbjct: 297 NALVDMYAKVGDLADAISVFE-----KIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351

Query: 110 -ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
            +LH  +++   E  + VS  L+  Y+   ++E AR  F+ +PE+DL++WN+IIS Y+Q 
Sbjct: 352 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 411

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
              +EAL L+  M  E +G +  TL  +L S A +  +++   +H ++ + GF   +YV 
Sbjct: 412 WEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVV 471

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N+L+D Y KC +++ A  +F      D++S+ SMI  Y  +G+G+EA+  F +M      
Sbjct: 472 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 531

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           PD      LL  C++    E+G +  H+ + +Y     I     LV++Y + G ++ A  
Sbjct: 532 PDRFVCSSLLNACANLSAFEQGKQ-LHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGR 590

Query: 349 VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLATIYACT 405
             +  +    V W  ++G    H +   G  A++   Q+  E  S     L++ + AC 
Sbjct: 591 AFSELTERGIVSWSAMIGGLAQHGH---GRQALQLFNQMLKEGVSPNHITLVSVLGACN 646



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 137/294 (46%), Gaps = 11/294 (3%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P + +++  L  C   K+L    ++H  + +SG      +  +L+  Y+       AR +
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
            D   E DLVSW+++IS Y Q      AL  +  M    V  + FT   +L +C+ V  L
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            +G  +H +    GF   V+V N LV MYAKC     +  +F  + +R+V+SWN++   Y
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC-----SHQGLVEEGVEYFHMMVSRY 321
                  EA+  F +M+++G  P+  +   ++  C     S +G +  G    +++   Y
Sbjct: 234 VQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHG----YLIKLGY 289

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
           +  P   +   LVD+Y + G L  A+ V       D V W  ++  C +H + E
Sbjct: 290 DWDPFSAN--ALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHE 341



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 162/346 (46%), Gaps = 34/346 (9%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LF++I      +WN+L   + Q     +A+  +  M+++ + +P+ F+ +  + AC  ++
Sbjct: 214 LFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGI-KPNEFSLSSMVNACTGLR 272

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
             ++ + +HG++I+ GY+     +  L+  YA  G +  A SVF+ + + D+VSWN++I+
Sbjct: 273 DSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIA 332

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
                  H +AL+L  +M+ +                           LH    +M    
Sbjct: 333 GCVLHEHHEQALELLGQMKRQ---------------------------LHSSLMKMDMES 365

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            ++V   LVDMY+KC  L+ A   F+ + ++D+++WN++I GY  +    EA+S F +M 
Sbjct: 366 DLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMH 425

Query: 284 MAGFHPDSITFLGLLCGCSHQGL-VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
             G   +  T   +L   S  GL V       H +  +      I     L+D YG+   
Sbjct: 426 KEGIGFNQTTLSTIL--KSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSH 483

Query: 343 LEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
           +E A  +    +  D V + +++ +   +     GE A+K  ++++
Sbjct: 484 VEDAERIFEECTIGDLVSFTSMITA---YAQYGQGEEALKLFLEMQ 526


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/523 (37%), Positives = 304/523 (58%), Gaps = 23/523 (4%)

Query: 43  LLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
           LL +  QN    +W ++I    Q+     A   ++ M    ++ P+ FT++  L A   V
Sbjct: 365 LLMSGSQN--VVSWTAMINGCIQNGDVPLAAALFSRMREDGVA-PNDFTYSTILTA--SV 419

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
            +L    ++H  VI++ YE   +V T L+  Y+     E A S+F  + ++D+VSW++++
Sbjct: 420 ASLPP--QIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAML 477

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGF 221
           +CY QA     A  ++ +M    +  + FT+  ++ +CA   A +++G   H I+ +   
Sbjct: 478 TCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRC 537

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
            +++ V +ALV MYA+ G+++SA C+F R   RD++SWNSM+ GY  HG   +A+  F+Q
Sbjct: 538 HDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQ 597

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           M   G   D +TFL ++ GC+H GLVEEG  YF  M   Y + P ++HY C+VDLY RAG
Sbjct: 598 MEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAG 657

Query: 342 KLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
           KL++A+ +I   S P+ P++WRTLLG+CK+H+NVE+G++A + L+ LE   +  YVLL+ 
Sbjct: 658 KLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSN 717

Query: 401 IYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE 460
           IY+     +     RKL+ +  +K   G SWI+I N+VH F+  DKSHP ++ IY KL  
Sbjct: 718 IYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRA 777

Query: 461 IMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
           +  + K  GY  D S        +E+  E   A HSE+LA+AFGL  TP G  L I KNL
Sbjct: 778 MTTKLKQEGYCPDTSFAL--HEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNL 835

Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R            S    R++++RD  R+HHF  G+CSCGD+W
Sbjct: 836 RVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 152/292 (52%), Gaps = 19/292 (6%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVV-VSTNLMRGYAANGVIEAARSVFDNMPERD 154
           LK C  V      ++LHG  IR G++R  V V T+L+  Y     +   R VF+ MP+R+
Sbjct: 110 LKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRN 169

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +V+W S+++ Y Q     + ++L+ RMR E V  +  T   +LS  A  G +++G  +H 
Sbjct: 170 VVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHA 229

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            + + G   +V+V N+L++MYAKCG ++ A  VF  M  RD++SWN+++ G  ++G   E
Sbjct: 230 QSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLE 289

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY----NLKPGIKHY 330
           A+  F          DS + + +L   ++  +++       + ++R      LK G   Y
Sbjct: 290 ALQLFH---------DSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSY 340

Query: 331 G----CLVDLYGRAGKLEKALEVINTSSPSDPVL-WRTLLGSCKIHRNVEIG 377
           G     L+D Y +AG+L  AL++    S S  V+ W  ++  C  + +V + 
Sbjct: 341 GNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLA 392



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 158/377 (41%), Gaps = 12/377 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQ--SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101
           +F  +       W SL+  + Q  +LS +  +F+    + A    P++ TF   L     
Sbjct: 161 VFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFR---MRAEGVWPNSVTFASVLSVVAS 217

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161
              ++  + +H   ++ G    V V  +LM  YA  G++E AR VF  M  RD+VSWN++
Sbjct: 218 QGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTL 277

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           ++        LEAL+L+   R     L   T   ++  CA++  L +   LH    + GF
Sbjct: 278 MAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGF 337

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFK 280
                V  AL+D Y+K G L +A  +F  M   ++V+SW +MI G   +G    A + F 
Sbjct: 338 HSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFS 397

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M   G  P+  T+  +L        V       H  V + N +        L+  Y + 
Sbjct: 398 RMREDGVAPNDFTYSTILTAS-----VASLPPQIHAQVIKTNYECTSIVGTALLASYSKL 452

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
              E+AL +       D V W  +L +C        G   +   + +      ++ + + 
Sbjct: 453 CNTEEALSIFKMIDQKDVVSWSAML-TCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSV 511

Query: 401 IYACTKDEEGVARTRKL 417
           I AC     GV   R+ 
Sbjct: 512 IDACASPTAGVDLGRQF 528


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 189/525 (36%), Positives = 297/525 (56%), Gaps = 18/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+LLF+        +WN+++  F  S +  +A+  ++ ++     + D  TF    KA  
Sbjct: 453 AELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFS-LMHERGEKADQITFANAAKAAG 511

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +  L + +++H  VI+  +   + V + ++  Y   G +++AR VF+ +P  D V+W +
Sbjct: 512 CLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTT 571

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS   +     +AL  Y +MR   V  D +T   L+ +C+ + AL  G  +H    ++ 
Sbjct: 572 VISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLN 631

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
                +V  +LVDMYAKCGN++ A+ +F RM  R V  WN+MIVG   HG  +EA++FF 
Sbjct: 632 CAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFN 691

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M   G  PD +TF+G+L  CSH GL  +  + F  M   Y ++P I+HY CLVD   RA
Sbjct: 692 EMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRA 751

Query: 341 GKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G +++A +V+ +S P  +   ++RTLL +C++  + E GE   + L  ++ + +  YVLL
Sbjct: 752 GHIQEAEKVV-SSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLL 810

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + IYA     E     R ++K   +K  PG+SWI++ N+VH FV  D+SH + D+IY K+
Sbjct: 811 SNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKV 870

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           E +M R K  GY  D     V     E+  E + +YHSEKLAIA+GL  TP  T+LR++K
Sbjct: 871 EYVMKRIKEEGYVPDTEFALV--DIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIK 928

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S  + R++++RD  R+HHFR G+CSCGDYW
Sbjct: 929 NLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 170/343 (49%), Gaps = 5/343 (1%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           + S++YA+ +F Q++     +WN++I   A+S     ++  +  +L + L  PD FT T 
Sbjct: 345 AGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGL-LPDQFTITS 403

Query: 95  TLKACERVKALNKC--QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
            L+AC  ++  + C  +++H   +++G      VST L+  Y+  G +E A  +F N   
Sbjct: 404 VLRACSSLEE-SYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDG 462

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
            DL SWN+++  +T +  + EAL+L+  M       D  T      +   +  L  G  +
Sbjct: 463 FDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQI 522

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H +  +M F   ++V + ++DMY KCG + SA  VF+++   D ++W ++I G   +G  
Sbjct: 523 HAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEE 582

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           ++A+  + QM +AG  PD  TF  L+  CS    +E+G +  H  + + N          
Sbjct: 583 EQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQ-IHANIMKLNCAFDPFVMTS 641

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
           LVD+Y + G +E A  +    +     LW  ++     H N E
Sbjct: 642 LVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAE 684



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 131/285 (45%), Gaps = 15/285 (5%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYT 166
           +  H  ++ SG      V+ NL+  YA  G + +AR +FD  P+  RDLV++N+I++ Y 
Sbjct: 33  KRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYA 92

Query: 167 QA-SFH-----LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
                H      EA  ++  +R   +     TL  L   C   G+ +    L   A ++G
Sbjct: 93  HTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIG 152

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               V+V  ALV++YAK   +  A  +F RM  RDV+ WN M+  Y   G GDE +  F 
Sbjct: 153 LQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFS 212

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY---NLKPGIKHYGCLVDLY 337
               +G  PD ++   +L G   + + E  +E      ++    +    +  +   +  Y
Sbjct: 213 AFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSY 272

Query: 338 GRAGKLEKAL----EVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
            +AG+  +A+    ++I +  P D + +  +L       ++E+G+
Sbjct: 273 LQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGK 317



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 149/337 (44%), Gaps = 36/337 (10%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A++LF+++       WN +++A+ +  +  + +  ++    + L RPD          C 
Sbjct: 176 ARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGL-RPD----------CV 224

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            V+ +     L G   ++ +ER        +R YA          +F    + D+  WN 
Sbjct: 225 SVRTI-----LMGVGKKTVFER----ELEQVRAYATK--------LFVCDDDSDVTVWNK 267

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
            +S Y QA    EA+  +  M    V  D  T + +LS  A +  L +G  +H      G
Sbjct: 268 TLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFG 327

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           + + V V N+ ++MY K G+++ A  +F +M++ D++SWN++I G    G  + ++  F 
Sbjct: 328 WDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFI 387

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG----CLVDL 336
            +L +G  PD  T   +L  CS    +EE        V    LK GI         L+D+
Sbjct: 388 DLLRSGLLPDQFTITSVLRACSS---LEESY-CVGRQVHTCALKAGIVLDSFVSTALIDV 443

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRN 373
           Y + GK+E+A  + +     D   W  ++    +  N
Sbjct: 444 YSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDN 480



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 170/430 (39%), Gaps = 52/430 (12%)

Query: 1   MGLKKHARYV--GLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQ---- 54
           +G + HA  V  GLN  R         L+  YA     SL  A+ LF+    PQ+     
Sbjct: 31  LGKRTHAVIVTSGLNPDRYVTNN----LITMYA--KCGSLFSARKLFDI--TPQSDRDLV 82

Query: 55  AWNSLIRAFAQS-----LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ 109
            +N+++ A+A +     +      F+   +L  S+      T +   K C    + +  +
Sbjct: 83  TYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASE 142

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
            L G+ ++ G +  V V+  L+  YA    I  AR +FD MP RD+V WN ++  Y +  
Sbjct: 143 ALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMG 202

Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
              E L L+            F    L   C  V  + MG+    +     F   +    
Sbjct: 203 AGDEVLGLFS----------AFHRSGLRPDCVSVRTILMGVGKKTV-----FERELEQVR 247

Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
           A       C + DS           DV  WN  +  Y   G G EA+  F+ M+ +    
Sbjct: 248 AYATKLFVCDD-DS-----------DVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPC 295

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           DS+T++ +L   +    +E G +  H  V R+     +      +++Y +AG +  A  +
Sbjct: 296 DSLTYIVILSVVASLNHLELGKQ-IHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRM 354

Query: 350 INTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACTKD 407
                  D + W T++  C       + E +++  + L  +      + + + + AC+  
Sbjct: 355 FGQMKEVDLISWNTVISGCA---RSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSL 411

Query: 408 EEGVARTRKL 417
           EE     R++
Sbjct: 412 EESYCVGRQV 421



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 27/177 (15%)

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF--SRMRKRDVLSWNSMI 263
           L +G   H +    G     YV N L+ MYAKCG+L SA  +F  +    RD++++N+++
Sbjct: 29  LILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAIL 88

Query: 264 VGYGVHG------RGDEAISFFK----QMLMAGFHPDSITF-LGLLCGCSHQGLVEEGVE 312
             Y   G      +  EA   F+     +++   H  S  F L LL G        +G  
Sbjct: 89  AAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQG-- 146

Query: 313 YFHMMVSRYNLKPGIKH----YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                   Y +K G++      G LV++Y +  ++ +A  + +     D VLW  ++
Sbjct: 147 --------YAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMM 195


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/541 (36%), Positives = 305/541 (56%), Gaps = 28/541 (5%)

Query: 26  LLNSYAIS-VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS-LSPLQAIFYYNHMLMAS 83
           L++ YA S +  ++ YA  +F +++     +W +LI  + QS +   + +  +  ML  S
Sbjct: 295 LVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNES 354

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
           + +P+  T++  LKAC  +   +  +++H  VI+S       V   L+  YA +G +E A
Sbjct: 355 I-KPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEA 413

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           R VF+ + ER      S+ISC T+         L  R+   D+G+   T   L+S+ A V
Sbjct: 414 RRVFNQLYER------SMISCITEG----RDAPLDHRIGRMDMGISSSTFASLISAAASV 463

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           G L  G  LH +  + GF    +V N+LV MY++CG L+ A   F+ ++ R+V+SW SMI
Sbjct: 464 GMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMI 523

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            G   HG  + A+S F  M++ G  P+ +T++ +L  CSH GLV EG EYF  M   + L
Sbjct: 524 SGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGL 583

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
            P ++HY C+VDL  R+G +++ALE IN     +D ++W+TLLG+C+ H N+E+GEIA K
Sbjct: 584 IPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAK 643

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
           N+++LE      YVLL+ +YA     + VAR R  ++ N +    G SW+E+ N  H+F 
Sbjct: 644 NVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFR 703

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             D SHP A  IY KL+ ++   K +GY  D S+V      S++  E+    HSEK+A+A
Sbjct: 704 AGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVL--HDMSDELKEQYLLQHSEKIAVA 761

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FGL TT     +RI KNLR            S A  R++I+RD  R+H  +DG CSCG+Y
Sbjct: 762 FGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEY 821

Query: 551 W 551
           W
Sbjct: 822 W 822



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 5/232 (2%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           + V + L+   A NG + +AR VFD + E+ +V W  +IS Y Q     EA++++     
Sbjct: 188 IAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLE 247

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG---N 240
           +    D +T+  ++S+C  +G++ +G+ LH +A  MGF     V   LVDMYAK      
Sbjct: 248 DGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQA 307

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHG-RGDEAISFFKQMLMAGFHPDSITFLGLLC 299
           +D A  VF RMRK DV+SW ++I GY   G + ++ +  F +ML     P+ IT+  +L 
Sbjct: 308 MDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILK 367

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
            C++    + G +  H  V + N          LV +Y  +G +E+A  V N
Sbjct: 368 ACANISDHDSGRQ-VHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFN 418



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 40/280 (14%)

Query: 109 QELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVSWNSIISCYT 166
           + LH  ++R    +R  VV+ +L+  Y+  G + +AR+VFD M   RD+VSW ++ SC  
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLA 127

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC--------- 217
           +     E+L L   M    +  + +TL  +  +C          F H + C         
Sbjct: 128 RNGAERESLLLIGEMLESGLLPNAYTLCAVAHAC----------FPHELYCLVGGVVLGL 177

Query: 218 --EMG-FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR-GD 273
             +MG +   + VG+AL+DM A+ G+L SA  VF  + ++ V+ W  +I  Y V G   +
Sbjct: 178 VHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRY-VQGECAE 236

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC- 332
           EA+  F   L  GF PD  T   ++  C+  G V  G++   +      L+ G     C 
Sbjct: 237 EAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLA-----LRMGFASDACV 291

Query: 333 ---LVDLYGRAGKLEKALEVINT----SSPSDPVLWRTLL 365
              LVD+Y ++  +E+A++  N        +D + W  L+
Sbjct: 292 SCGLVDMYAKS-NIEQAMDYANKVFERMRKNDVISWTALI 330


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/559 (35%), Positives = 314/559 (56%), Gaps = 51/559 (9%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  LF+Q+ +P   +WNS+I  +      ++A+  ++ ML +S  +PD FT    L AC 
Sbjct: 230 ALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACA 289

Query: 101 RVKALNKCQELHGFVIRSGYERC---------------------------------VVVS 127
             ++L   +++H  ++R+  +                                   V+  
Sbjct: 290 NRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAF 349

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           T+L+ GY   G I+ AR++FD++  RD+V+W ++I  Y Q     +AL L+  M  E   
Sbjct: 350 TSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPK 409

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
            + +TL  +LS  + + +L+ G  LH +A  +  V SV VGNAL+ MY++ G++  A  +
Sbjct: 410 PNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKI 469

Query: 248 FSRM-RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           F+ +   RD L+W SMI+    HG G+EAI  F++ML     PD IT++G+L  C+H GL
Sbjct: 470 FNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGL 529

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLL 365
           VE+G  YF++M + +N++P   HY C++DL GRAG LE+A   I N     D V W +LL
Sbjct: 530 VEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLL 589

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA-TIYACTKDEEGVARTRKLIKSNGIK 424
            SC++H+ V++ ++A + L+ ++  ++G Y+ LA T+ AC K E+  A+ RK +K   +K
Sbjct: 590 SSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDA-AKVRKSMKDKAVK 648

Query: 425 TTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSS 484
              G+SW++I N+VH F V+D  HP  D IY  + +I    K +G+  D +  +V     
Sbjct: 649 KEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTN--SVLHDLE 706

Query: 485 EDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVR 532
           ++  E+   +HSEKLAIAF L  TP  T++RI+KNLR            S+   R++IVR
Sbjct: 707 QEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVR 766

Query: 533 DRVRYHHFRDGLCSCGDYW 551
           D  R+HHF+DG CSC DYW
Sbjct: 767 DATRFHHFKDGSCSCQDYW 785



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 189/437 (43%), Gaps = 76/437 (17%)

Query: 9   YVGLNKARQAHEIHGEWLLNSY--------AISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           YV    +  AH +  E  L +         A + + +L  A+ +F++I  P + +W ++I
Sbjct: 58  YVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMI 117

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             +        A+  +  M+ + +S P  FTFT  L +C   +AL+  +++H FV++ G 
Sbjct: 118 VGYNHLGLFKSAVHAFLRMVSSGIS-PTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQ 176

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
              V V+ +L+  YA  G    A+ VFD M  +D  +WN++IS + Q      AL L+++
Sbjct: 177 SGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQ 236

Query: 181 MRFEDV--------------------------------GLDGFTLVCLLSSCAHVGALNM 208
           M   D+                                  D FTL  +LS+CA+  +L +
Sbjct: 237 MTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKL 296

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKC------------------------------ 238
           G  +H          +  VGNAL+ MYAK                               
Sbjct: 297 GKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGY 356

Query: 239 ---GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
              G++D A  +F  ++ RDV++W +MIVGY  +G   +A+  F+ M+  G  P++ T  
Sbjct: 357 FKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLA 416

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSS 354
            +L   S    ++ G +  H +  R      +     L+ +Y R+G ++ A ++ N   S
Sbjct: 417 AVLSVISSLASLDHG-KQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICS 475

Query: 355 PSDPVLWRTLLGSCKIH 371
             D + W +++ S   H
Sbjct: 476 YRDTLTWTSMILSLAQH 492


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 196/534 (36%), Positives = 311/534 (58%), Gaps = 29/534 (5%)

Query: 38  LSYAQLLFNQIQNPQTQ--AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           L  A+ +F  +  P+    +W +++ A+AQ+  P++A+  ++ M    + +PD       
Sbjct: 170 LGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDV-KPDCVALVSV 228

Query: 96  LKACERVKALNKCQELHGFVIRSGYER--CVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
           L A   ++ L + + +H  V++ G E    +++S N M  YA  G +  A+ +FD M   
Sbjct: 229 LNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTM--YAKCGQVATAKILFDKMKSP 286

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           +L+ WN++IS Y +  F  +A+ L+  M  +DV  D  ++   +S+CA VG+L    ++ 
Sbjct: 287 NLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMD 346

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
                  + + V++ +AL+DM+AKCG+++ A  VF R   RDV+ W++MIVGYG+HG+  
Sbjct: 347 EYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAR 406

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           EAIS ++ M   G HP+ +TFLGLL  C+H G+V EG  +F+ M   + + P  +HY C+
Sbjct: 407 EAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMAD-HKINPQQQHYACI 465

Query: 334 VDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           +DL GRAG L++A EVI    P  P   +W  LL +CK HR+VE+G+ A + L  ++ ++
Sbjct: 466 IDLLGRAGHLDQAYEVIKC-MPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSN 524

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
            G YV L+ +YA  +  + VA  R  +K  G+    G SW+E+  ++  F V DKSHP  
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRY 584

Query: 452 DMIYRKLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
           + I R++E I  R K  G+   KD SL  ++   +E+ L      HSE++ IA+GL +TP
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL----CSHSERITIAYGLISTP 640

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            GT+LRI KNLR            S    R+++VRD  R+HHF+DG+CSCGDYW
Sbjct: 641 QGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 194/378 (51%), Gaps = 5/378 (1%)

Query: 30  YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
           +A S    +++A+ +F+ +  PQ   WN++IR ++++     A+  Y+ M +A +S PD+
Sbjct: 61  HASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVS-PDS 119

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           FTF   LKAC  +  L   + +H  V R G+E  V V   L+  YA    +  AR+VF+ 
Sbjct: 120 FTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEG 179

Query: 150 --MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
             +PER +VSW +I+S Y Q    +EAL+++ +MR  DV  D   LV +L++   +  L 
Sbjct: 180 LPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLE 239

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  +H    +MG      +  +L  MYAKCG + +A  +F +M+  +++ WN+MI GY 
Sbjct: 240 QGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +G   +AI  F +M+     PD+I+    +  C+  G +E+   +    VSR + +  +
Sbjct: 300 KNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQA-RWMDEYVSRSDYRDDV 358

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
                L+D++ + G +E A  V + +   D V+W  ++    +H       I++   ++ 
Sbjct: 359 FISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREA-ISLYRAMER 417

Query: 388 EAASAGDYVLLATIYACT 405
           +     D   L  + AC 
Sbjct: 418 DGVHPNDVTFLGLLIACN 435



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 3/261 (1%)

Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
           + +++H  ++  G +    + T L+   ++ G I  AR VFD++P   +  WN+II  Y+
Sbjct: 36  QLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYS 95

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
           + +   +AL +Y +M+   V  D FT   LL +C  +  L MG F+H     +GF   V+
Sbjct: 96  RNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVF 155

Query: 227 VGNALVDMYAKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           V N L+ +YAKC  L  A  VF    + +R ++SW +++  Y  +G   EA+  F QM  
Sbjct: 156 VQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRK 215

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
               PD +  + +L   +    +E+G    H  V +  L+        L  +Y + G++ 
Sbjct: 216 MDVKPDCVALVSVLNAFTCLQDLEQG-RSIHASVMKMGLETEPDLLISLNTMYAKCGQVA 274

Query: 345 KALEVINTSSPSDPVLWRTLL 365
            A  + +     + +LW  ++
Sbjct: 275 TAKILFDKMKSPNLILWNAMI 295


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 199/548 (36%), Positives = 313/548 (57%), Gaps = 32/548 (5%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA   S+++  ++ +FN + +    +W +LI  + QS    +AI  + +ML  
Sbjct: 286 GCTLVDMYA--KSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHG 343

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            ++ P+ FTF+  LKAC  +      ++LHG  I+ G      V  +L+  YA +G +E 
Sbjct: 344 HVT-PNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMEC 402

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE----DVGLDGFTLVCLLS 198
           AR  F+ + E++L+S+N      T A  + +AL   E    E     VG   FT  CLLS
Sbjct: 403 ARKAFNILFEKNLISYN------TAADANAKALDSDESFNHEVEHTGVGASPFTYACLLS 456

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
             A +G +  G  +H +  + GF  ++ + NAL+ MY+KCGN ++A  VF+ M  R+V++
Sbjct: 457 GAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVIT 516

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           W S+I G+  HG   +A+  F +ML  G  P+ +T++ +L  CSH GL++E  ++F+ M 
Sbjct: 517 WTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMH 576

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIG 377
             +++ P ++HY C+VDL GR+G L +A+E IN+    +D ++WRT LGSC++HRN ++G
Sbjct: 577 YNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLG 636

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
           E A K +++ E      Y+LL+ +YA     + VA  RK +K   +    G+SWIE+ NQ
Sbjct: 637 EHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQ 696

Query: 438 VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYH 495
           VHKF V D SHP A  IY +L+E+  + K +GY  +   V   V     E +L +    H
Sbjct: 697 VHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQ----H 752

Query: 496 SEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDG 543
           SEK+A+A+ L +TP    +R+ KNLR            SI   R+++VRD  R+HH +DG
Sbjct: 753 SEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKDG 812

Query: 544 LCSCGDYW 551
            CSC DYW
Sbjct: 813 KCSCNDYW 820



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 155/305 (50%), Gaps = 13/305 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMAS--LSRPDTFTFTFTLKACERVKALNKCQELH 112
           +W+++I  FA +    +A+  + HML  S  +  P+ + FT  L++C           + 
Sbjct: 109 SWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIF 168

Query: 113 GFVIRSGY-ERCVVVSTNLMRGYAANGV-IEAARSVFDNMPERDLVSWNSIISCYTQASF 170
            F++++GY +  V V   L+  +   G+ I++AR VFD M  ++LV+W  +I+ Y+Q   
Sbjct: 169 AFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGL 228

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
             +A+ L+ R+   +   D FTL  LLS+C  +   ++G  LH      G    V+VG  
Sbjct: 229 LDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCT 288

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           LVDMYAK   ++++  +F+ M   +V+SW ++I GY    +  EAI  F  ML     P+
Sbjct: 289 LVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPN 348

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC----LVDLYGRAGKLEKA 346
             TF  +L  C+   L + G+      +    +K G+    C    L+++Y R+G +E A
Sbjct: 349 CFTFSSVLKACA--SLPDFGIG---KQLHGQTIKLGLSTINCVGNSLINMYARSGTMECA 403

Query: 347 LEVIN 351
            +  N
Sbjct: 404 RKAFN 408



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 165/331 (49%), Gaps = 4/331 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+++F+++Q+     W  +I  ++Q      A+  +  +L++  + PD FT T  L AC 
Sbjct: 201 ARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYT-PDKFTLTSLLSACV 259

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            ++  +  ++LH +VIRSG    V V   L+  YA +  +E +R +F+ M   +++SW +
Sbjct: 260 ELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTA 319

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y Q+    EA+KL+  M    V  + FT   +L +CA +    +G  LH    ++G
Sbjct: 320 LISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLG 379

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
                 VGN+L++MYA+ G ++ A   F+ + +++++S+N+           DE  SF  
Sbjct: 380 LSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDE--SFNH 437

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           ++   G      T+  LL G +  G + +G E  H ++ +      +     L+ +Y + 
Sbjct: 438 EVEHTGVGASPFTYACLLSGAACIGTIVKG-EQIHALIVKSGFGTNLCINNALISMYSKC 496

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           G  E AL+V N     + + W +++     H
Sbjct: 497 GNKEAALQVFNDMGYRNVITWTSIISGFAKH 527



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 10/281 (3%)

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP- 151
           +  LKAC R   L   + LH  +I SG     V+  +L+  Y+  G  E A S+F NM  
Sbjct: 43  SLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGH 102

Query: 152 -ERDLVSWNSIISCYTQASFHLEALKLYERM---RFEDVGLDGFTLVCLLSSCAHVGALN 207
            +RDLVSW++IISC+   S    AL  +  M       +  + +    LL SC++     
Sbjct: 103 HKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFT 162

Query: 208 MGIFLHRIACEMGFVES-VYVGNALVDMYAKCG-NLDSAFCVFSRMRKRDVLSWNSMIVG 265
            G+ +     + G+ +S V VG AL+DM+ K G ++ SA  VF +M+ +++++W  MI  
Sbjct: 163 TGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITR 222

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y   G  D+A+  F ++L++ + PD  T   LL  C        G +  H  V R  L  
Sbjct: 223 YSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQ-LHSWVIRSGLAS 281

Query: 326 GIKHYGC-LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +   GC LVD+Y ++  +E + ++ NT    + + W  L+
Sbjct: 282 DV-FVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALI 321


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/523 (37%), Positives = 295/523 (56%), Gaps = 40/523 (7%)

Query: 53  TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
           T  +N+L+  +  +     A+  +  M    +   ++ T    + AC     L     LH
Sbjct: 108 TVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPV-NSVTLLGLIPACVSPINLELGSSLH 166

Query: 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
              ++ G++  V V    +  Y   G +  A+ +FD MP + L+SWN+++S Y Q     
Sbjct: 167 CSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLAT 226

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM---GFVESVYVGN 229
             L+LY  M    V  D  TLV +LSSCA++GA ++G   H +  +M   GF  + ++ N
Sbjct: 227 NVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVG---HEVEFKMQASGFTSNPFLNN 283

Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
           AL++MYA+CGNL  A  VF  M +R ++SW ++I GYG+HG G+ A+  FK+M+ +G  P
Sbjct: 284 ALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEP 343

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           D   F+ +L  CSH GL ++G+EYF MM   Y L+PG +HY C+VDL GRAG+L++A  +
Sbjct: 344 DGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTL 403

Query: 350 INTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407
           I  S P  P   +W  LLG+CKIH+NVE+ E+A + +++LE  + G YVLL+ IY+   +
Sbjct: 404 IE-SMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANN 462

Query: 408 EEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF 467
            +GV R R ++K   +K  PG S++E+  +VH F+V D++H  +D IYR LEE+      
Sbjct: 463 SKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEEL------ 516

Query: 468 IGYTKDESLVAVSGSSSEDFLEKSS-------AYHSEKLAIAFGLATTPDGTSLRIVKNL 520
                +  ++   G   +D  E+S+         HSEKLA+AFGL  T  G  + I+KNL
Sbjct: 517 -----EAIIMQEFGKPEKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNL 571

Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R            S    R L VRD  R+HHFR+G CSC DYW
Sbjct: 572 RICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 168/340 (49%), Gaps = 6/340 (1%)

Query: 50  NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ 109
           N  +  WN+ +R  A+    LQA+  Y  ML     RP+ FTF F LK+C  +       
Sbjct: 2   NALSTPWNTQLRELAKRCQFLQALSLYPQMLRHG-DRPNAFTFPFALKSCAALSLPILGS 60

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF-DNMPERDL-VSWNSIISCYTQ 167
           + HG + + G      V T L+  Y    +++ AR VF +N   R L V +N+++S Y  
Sbjct: 61  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVS 120

Query: 168 ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227
            S   +A+ L+ +M  E V ++  TL+ L+ +C     L +G  LH    + GF   V V
Sbjct: 121 NSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSV 180

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
            N  + MY KCG+++ A  +F  M  + ++SWN+M+ GY  +G     +  ++ M M G 
Sbjct: 181 VNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV 240

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEY-FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
           HPD +T +G+L  C++ G    G E  F M  S +   P + +   L+++Y R G L KA
Sbjct: 241 HPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCGNLTKA 298

Query: 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
             V +       V W  ++G   +H + EI     K +++
Sbjct: 299 QAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIR 338



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 142/306 (46%), Gaps = 9/306 (2%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S++YAQ LF+++      +WN+++  +AQ+      +  Y +M M  +  PD  T    L
Sbjct: 193 SVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV-HPDPVTLVGVL 251

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            +C  + A +   E+   +  SG+     ++  L+  YA  G +  A++VFD MPER LV
Sbjct: 252 SSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLV 311

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRI 215
           SW +II  Y        A++L++ M    +  DG   VC+LS+C+H G  + G+ +   +
Sbjct: 312 SWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMM 371

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDE 274
                        + +VD+  + G L  A  +   M  K D   W +++    +H   + 
Sbjct: 372 KRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVEL 431

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-L 333
           A   F++++     P++I +  LL          +GV    +M+    LK   K  GC  
Sbjct: 432 AELAFERVIE--LEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLK---KDPGCSY 486

Query: 334 VDLYGR 339
           V+L GR
Sbjct: 487 VELKGR 492


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/572 (34%), Positives = 317/572 (55%), Gaps = 49/572 (8%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
            + + A+S    L YA  + ++ + P   A NS+IRA  +S  P ++  +Y  +L +   
Sbjct: 44  FVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGND 103

Query: 86  -RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA-- 142
            +PD +T  F ++AC  ++      ++HG  IR G++    V T L+  YA  G +++  
Sbjct: 104 LKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCH 163

Query: 143 -----------------------------ARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
                                        AR +F+ MPERD ++WN++IS Y Q     E
Sbjct: 164 KVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESRE 223

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           AL ++  M+ E V ++G  ++ +LS+C  +GAL+ G + H          +V +   LVD
Sbjct: 224 ALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVD 283

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           +YAKCG+++ A  VF  M +++V +W+S + G  ++G G++ +  F  M   G  P+++T
Sbjct: 284 LYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F+ +L GCS  G V+EG  +F  M + + ++P ++HYGCLVDLY RAG+LE A+ +I   
Sbjct: 344 FVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQ-Q 402

Query: 354 SPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
            P  P   +W +LL + ++++N+E+G +A K +++LE A+ G YVLL+ IYA + D + V
Sbjct: 403 MPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNV 462

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
           +  R+ +KS G++  PG S +E+  +VH+F V DKSHP    I    ++I  R +  GY 
Sbjct: 463 SHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYK 522

Query: 472 KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
            D + V       E   E +   HSEK AIAFG+ +  +   +RIVKNLR          
Sbjct: 523 ADTTPVMFDIDEEEK--EDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSM 580

Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             S  ++R++IVRDR R+HHF+DG CSC  +W
Sbjct: 581 MISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 211/563 (37%), Positives = 315/563 (55%), Gaps = 55/563 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ AQ  F Q+       WNS+I  F Q    L+A+  ++ ML  SL  PD FT    L 
Sbjct: 230 LAMAQ--FEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLS 287

Query: 98  ACERVKALNKCQELHGFVIRSG--------------YERCVVVSTN-------------- 129
           AC  ++ L   +++H  ++ +G              Y RC  V T               
Sbjct: 288 ACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKI 347

Query: 130 -----LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
                L+ GY   G +  A+++F ++ +RD+V+W ++I  Y Q   + EA+ L+  M   
Sbjct: 348 EGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGG 407

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
               + +TL  +LS  + + +L+ G  +H  A + G + SV V NAL+ MYAK GN+ SA
Sbjct: 408 GQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSA 467

Query: 245 FCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
              F  +R +RD +SW SMI+    HG  +EA+  F+ MLM G  PD IT++G+   C+H
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTH 527

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
            GLV +G +YF MM     + P + HY C+VDL+GRAG L++A E I    P +P  V W
Sbjct: 528 AGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIE-KMPIEPDVVTW 586

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY-ACTKDEEGVARTRKLIKS 420
            +LL +C++H+N+++G++A + L+ LE  ++G Y  LA +Y AC K EE  A+ RK +K 
Sbjct: 587 GSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEA-AKIRKSMKD 645

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
             +K   G+SWIE+ ++VH F V+D +HP+ + IY  +++I    K +GY  D +  +V 
Sbjct: 646 GRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTA--SVL 703

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
               E+  E+   +HSEKLAIAFGL +TPD T+LRI+KNLR            S    R+
Sbjct: 704 HDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGRE 763

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +IVRD  R+HHF+DG CSC DYW
Sbjct: 764 IIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 166/398 (41%), Gaps = 68/398 (17%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
            F+Q+    + +W ++I  +       +AI     M+   +  P  FT T  L +    +
Sbjct: 102 FFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGI-EPTQFTLTNVLASVAATR 160

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW----- 158
            +   +++H F+++ G    V VS +L+  YA  G    A+ VFD M  RD+ SW     
Sbjct: 161 CMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIA 220

Query: 159 --------------------------NSIISCYTQASFHLEALKLYERM-RFEDVGLDGF 191
                                     NS+IS + Q  + L AL ++ +M R   +  D F
Sbjct: 221 LHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRF 280

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC------------- 238
           TL  +LS+CA++  L +G  +H      GF  S  V NAL+ MY++C             
Sbjct: 281 TLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQR 340

Query: 239 --------------------GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
                               G+++ A  +F  ++ RDV++W +MIVGY  HG   EAI+ 
Sbjct: 341 GTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINL 400

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F+ M+  G  P+S T   +L   S    +  G +  H    +      +     L+ +Y 
Sbjct: 401 FRSMVGGGQRPNSYTLAAMLSVASSLASLSHG-KQIHGSAVKSGEIYSVSVSNALITMYA 459

Query: 339 RAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVE 375
           +AG +  A    +      D V W +++ +   H + E
Sbjct: 460 KAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAE 497



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 145/347 (41%), Gaps = 76/347 (21%)

Query: 84  LSRPDTFTFTFTLKACERV--KALNK------CQELHGFVIRSGYERCVVVSTNLMRGYA 135
           +  P   + +  L+ C  +  K++NK       Q +H  VI+SG    V +  NLM  Y+
Sbjct: 1   MDAPVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYS 60

Query: 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQ---------------------------- 167
             G    AR +FD MP R   SWN+++S Y++                            
Sbjct: 61  KTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVG 120

Query: 168 ----ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
                 +H +A+++   M  E +    FTL  +L+S A    +  G  +H    ++G   
Sbjct: 121 YKNIGQYH-KAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRG 179

Query: 224 SVYVGNALVDMYAKCGN-------------------------------LDSAFCVFSRMR 252
           +V V N+L++MYAKCG+                               +D A   F +M 
Sbjct: 180 NVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMA 239

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGV 311
           +RD+++WNSMI G+   G    A+  F +ML      PD  T   +L  C++   +  G 
Sbjct: 240 ERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGK 299

Query: 312 E-YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           + + H++ + +++   +     L+ +Y R G +E A  +I      D
Sbjct: 300 QIHSHIVTTGFDISGIV--LNALISMYSRCGGVETARRLIEQRGTKD 344



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 4/166 (2%)

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
           + + +  N ++  Y+K G++DS    F ++ +RD +SW +MIVGY   G+  +AI     
Sbjct: 77  LRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGD 136

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           M+  G  P   T   +L   +    +E G +  H  + +  L+  +     L+++Y + G
Sbjct: 137 MVKEGIEPTQFTLTNVLASVAATRCMETG-KKVHSFIVKLGLRGNVSVSNSLLNMYAKCG 195

Query: 342 KLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
               A  V +     D   W  ++    +H  V   ++AM    Q+
Sbjct: 196 DPMMAKFVFDRMVVRDISSWNAMIA---LHMQVGQMDLAMAQFEQM 238


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 195/520 (37%), Positives = 293/520 (56%), Gaps = 34/520 (6%)

Query: 53  TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
           T  +N+L+  +  +    +A+  +  M    +   ++ T    + AC     L     LH
Sbjct: 117 TVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPV-NSVTLLGLIPACVSPINLELGSSLH 175

Query: 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
              ++ G++  V V    +  Y   G +  A+ +FD MP + L+SWN+++S Y Q     
Sbjct: 176 CSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLAT 235

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
             L+LY  M    V  D  TLV +LSSCA++GA ++G  +       GF  + ++ NAL+
Sbjct: 236 NVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALI 295

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           +MYA+CGNL  A  VF  M +R ++SW ++I GYG+HG G+ A+  FK+M+ +G  PD  
Sbjct: 296 NMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGT 355

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
            F+ +L  CSH GL ++G+EYF MM   Y L+PG +HY C+VDL GRAG+L++A  +I  
Sbjct: 356 AFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIE- 414

Query: 353 SSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410
           S P  P   +W  LLG+CKIH+NVE+ E+A + +++LE  + G YVLL+ IY+   + +G
Sbjct: 415 SMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKG 474

Query: 411 VARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY 470
           V R R ++K   +K  PG S++E+  +VH F+V D++H  +D IYR LEE+         
Sbjct: 475 VLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEEL--------- 525

Query: 471 TKDESLVAVSGSSSEDFLEKSS-------AYHSEKLAIAFGLATTPDGTSLRIVKNLR-- 521
             +  ++   G   +D  E+S+         HSEKLA+AFGL  T  G  + I+KNLR  
Sbjct: 526 --EAIIMQEFGKPEKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRIC 583

Query: 522 ----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                     S    R L VRD  R+HHFR+G CSC DYW
Sbjct: 584 EDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 168/340 (49%), Gaps = 6/340 (1%)

Query: 50  NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ 109
           N  +  WN+ +R  A+    LQA+  Y  ML     RP+ FTF F LK+C  +       
Sbjct: 11  NALSTPWNTQLRELAKRCQFLQALSLYPQMLRHG-DRPNAFTFPFALKSCAALSLPILGS 69

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF-DNMPERDL-VSWNSIISCYTQ 167
           + HG + + G      V T L+  Y    +++ AR VF +N   R L V +N+++S Y  
Sbjct: 70  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVS 129

Query: 168 ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227
            S   EA+ L+ +M  E V ++  TL+ L+ +C     L +G  LH    + GF   V V
Sbjct: 130 NSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSV 189

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
            N  + MY KCG+++ A  +F  M  + ++SWN+M+ GY  +G     +  ++ M M G 
Sbjct: 190 VNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV 249

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEY-FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
           HPD +T +G+L  C++ G    G E  F +  S +   P + +   L+++Y R G L KA
Sbjct: 250 HPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALINMYARCGNLTKA 307

Query: 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
             V +       V W  ++G   +H + EI     K +++
Sbjct: 308 QAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIR 347



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 142/306 (46%), Gaps = 9/306 (2%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S++YAQ LF+++      +WN+++  +AQ+      +  Y +M M  +  PD  T    L
Sbjct: 202 SVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV-HPDPVTLVGVL 260

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            +C  + A +   E+   +  SG+     ++  L+  YA  G +  A++VFD MPER LV
Sbjct: 261 SSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLV 320

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRI 215
           SW +II  Y        A++L++ M    +  DG   VC+LS+C+H G  + G+ +   +
Sbjct: 321 SWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMM 380

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDE 274
                        + +VD+  + G L  A  +   M  K D   W +++    +H   + 
Sbjct: 381 KRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVEL 440

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-L 333
           A   F++++     P++I +  LL          +GV    +M+    LK   K  GC  
Sbjct: 441 AELAFERVIE--LEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLK---KDPGCSY 495

Query: 334 VDLYGR 339
           V+L GR
Sbjct: 496 VELKGR 501


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 199/534 (37%), Positives = 300/534 (56%), Gaps = 26/534 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  AQ +F+ ++      WNS+I    Q      A+  +  M  + +S PD  T      
Sbjct: 220 LEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVS-PDVLTLVSLAS 278

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTN-LMRGYAANGVIEAARSVFDNMPERDLV 156
           A  +       + LH +V+R G++   +++ N ++  YA    IEAA+ +FD+MP +D V
Sbjct: 279 AIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSV 338

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF--TLVCLLSSCAHVGALNMGIFLHR 214
           SWN++I+ Y Q     EA++ Y  M+  + GL     T V +L + +H+GAL  G+ +H 
Sbjct: 339 SWNTLITGYMQNGLANEAVERYGHMQKHE-GLKAIQGTFVSVLPAYSHLGALQQGMRMHA 397

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
           ++ ++G    VYVG  L+D+YAKCG L  A  +F +M +R    WN++I G GVHG G E
Sbjct: 398 LSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAE 457

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A++ F +M   G  PD +TF+ LL  CSH GLV++G  +F +M   Y++ P  KHY C+ 
Sbjct: 458 ALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMA 517

Query: 335 DLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           D+ GRAG+L++A   I N     D  +W  LLG+C+IH NVE+G++A +NL +L+  + G
Sbjct: 518 DMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVG 577

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKS--HPDA 451
            YVL++ +YA     +GV   R L++   ++ TPGWS IE+   V+ F   +++  HP  
Sbjct: 578 YYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQH 637

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
           + I  +L  ++ + + +GY  D S V   V     E  L      HSE+LAIAFG+  TP
Sbjct: 638 EEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNN----HSERLAIAFGIINTP 693

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             T L I KNLR            S    R++IVRD  R+HHF+DG CSCGD+W
Sbjct: 694 SRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 154/312 (49%), Gaps = 7/312 (2%)

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKACERVKALNKCQELHGFV 115
           N+LI AF+++  P  A     H+L  +   RPD FTF   ++A     +     +LH   
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNAS---AAQLHACA 93

Query: 116 IRSGYER-CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           +R G  R  V  S +L+  Y   G I  A  VFD M ERD+ +WN+++S   + +   EA
Sbjct: 94  LRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEA 153

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           + L+ RM  E V  D  T+  +L  C  +G   + + +H  A + G  + ++V NAL+D+
Sbjct: 154 VGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDV 213

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y K G L+ A CVF  M  RD+++WNS+I G    G+   A+  F+ M  +G  PD +T 
Sbjct: 214 YGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTL 273

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLK-PGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           + L    + QG      +  H  V R       I     +VD+Y +   +E A  + ++ 
Sbjct: 274 VSLASAIA-QGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSM 332

Query: 354 SPSDPVLWRTLL 365
              D V W TL+
Sbjct: 333 PVQDSVSWNTLI 344



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 137/310 (44%), Gaps = 8/310 (2%)

Query: 21  IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           I G  +++ YA    S++  AQ +F+ +    + +WN+LI  + Q+    +A+  Y HM 
Sbjct: 307 IAGNAIVDMYA--KLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQ 364

Query: 81  MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
                +    TF   L A   + AL +   +H   I+ G    V V T L+  YA  G +
Sbjct: 365 KHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKL 424

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
             A  +F+ MP R    WN+IIS         EAL L+ RM+ E +  D  T V LL++C
Sbjct: 425 AEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAAC 484

Query: 201 AHVGALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLS 258
           +H G ++ G  F   +      V        + DM  + G LD AF     M  K D   
Sbjct: 485 SHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAV 544

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           W +++    +HG   E      Q L     P+++ +  L+     +    +GV+    +V
Sbjct: 545 WGALLGACRIHGN-VEMGKVASQNLFE-LDPENVGYYVLMSNMYAKVGKWDGVDEVRSLV 602

Query: 319 SRYNLK--PG 326
            R NL+  PG
Sbjct: 603 RRQNLQKTPG 612



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 21/221 (9%)

Query: 159 NSIISCYTQASFHLEALKLYERM-----RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           N++I+ +++A+    A  L   +      F     DGFT   L+ +     +      LH
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRP---DGFTFPSLIRAAPSNASAAQ---LH 90

Query: 214 RIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
             A  +G V  SV+   +LV  Y + G +  A+ VF  M +RDV +WN+M+ G   + R 
Sbjct: 91  ACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARA 150

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH--Y 330
            EA+  F +M+  G   D++T   +L  C     V  G +   +++  Y +K G+    +
Sbjct: 151 AEAVGLFGRMVGEGVAGDTVTVSSVLPMC-----VLLGDQVLALVMHVYAVKHGLDKELF 205

Query: 331 GC--LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCK 369
            C  L+D+YG+ G LE+A  V +     D V W +++  C+
Sbjct: 206 VCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCE 246


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 200/524 (38%), Positives = 299/524 (57%), Gaps = 23/524 (4%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F++     +  W+S+I AFAQ+ +PL A+ ++  ML   + RPD   +    KAC  ++
Sbjct: 82  VFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGV-RPDDHIYPSATKACGFLR 140

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
             +  + +H   +++GY   V V ++L+  YA  G I  AR +FD MPER++VSW+ +I 
Sbjct: 141 RSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIY 200

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y Q    +EAL L+++   EDV ++ FT   ++  C+    L +G  +H +  +M F  
Sbjct: 201 GYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDS 260

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           S +VG+AL+ +Y+KCG ++ A+ VF  +  R++  WNSM++    H         F++M 
Sbjct: 261 SSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMG 320

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  P+ I+FL +L  CSH GLVE+G EYF +M   Y ++P  +HY  LVDL GRAGKL
Sbjct: 321 NVGMKPNFISFLSVLYACSHAGLVEKGREYFSLM-RDYGIEPETEHYASLVDLLGRAGKL 379

Query: 344 EKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           ++A+ VI    P  P   +W  LL  C+IH++ E+       +++++++S+G +VLL+  
Sbjct: 380 QEAVSVIK-QMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNA 438

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           YA     E  AR RK+++  G+K   G SW+E GN+VH F   D+SH     IY KLEE+
Sbjct: 439 YAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEEL 498

Query: 462 MHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
               +  GY  D S V  AV G    + +     YHSE+LAIAFGL T P G  +R++KN
Sbjct: 499 EEEMEKAGYVADTSFVLRAVDGEEKNETIR----YHSERLAIAFGLITFPPGRPIRVMKN 554

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    R LIVRD  R+H F DG CSCGDYW
Sbjct: 555 LRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 155/314 (49%), Gaps = 20/314 (6%)

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R ++L +  +LH  +++ G +   +VS NL+  Y+   +   +  VFD  P++   +W+S
Sbjct: 37  RSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSS 96

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS + Q    L AL+ + RM  + V  D         +C  +   ++G  +H +A + G
Sbjct: 97  VISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTG 156

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +   V+VG++LVDMYAKCG +  A  +F  M +R+V+SW+ MI GY     G EA++ FK
Sbjct: 157 YYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFK 216

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           Q L+     +  TF  ++  CS    +E G +  H +  + +          L+ LY + 
Sbjct: 217 QALIEDVDVNDFTFSSVIRVCSSSTFLELG-KLIHGLCLKMSFDSSSFVGSALISLYSKC 275

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNV--------EIGEIAMK-NLVQLEAAS 391
           G +E A +V +     +  LW ++L +C  H +         E+G + MK N +      
Sbjct: 276 GVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIS----- 330

Query: 392 AGDYVLLATIYACT 405
                 L+ +YAC+
Sbjct: 331 -----FLSVLYACS 339



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 4/211 (1%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL S     +L  G+ LH    + G      V + L+++Y+K      +  VF    K+ 
Sbjct: 31  LLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKS 90

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
             +W+S+I  +  +     A+ FF++ML  G  PD   +      C      + G +  H
Sbjct: 91  STTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVG-KSVH 149

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNV 374
            +  +      +     LVD+Y + G++  A  + +     + V W  ++ G  ++   V
Sbjct: 150 CLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGV 209

Query: 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           E   +  + L+  E     D+   + I  C+
Sbjct: 210 EALTLFKQALI--EDVDVNDFTFSSVIRVCS 238


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/485 (39%), Positives = 286/485 (58%), Gaps = 28/485 (5%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV--IEAARS 145
           D         A  RV        LH  + + G+ER   V   ++  YA  G   +E AR 
Sbjct: 197 DEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARK 256

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHV 203
           VFD M ERD+VSWNS+I+ Y Q     EA+ LY +M     G+  +   L  +L +CAH 
Sbjct: 257 VFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHA 315

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           GA+  G  +H     MG  E+VYVG ++VDMY+KCG ++ A   F +++++++LSW++MI
Sbjct: 316 GAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMI 375

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            GYG+HGRG EA+  F +M  +G  P+ ITF+ +L  CSH GL++EG  +++ M   + +
Sbjct: 376 TGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGI 435

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           + G++HYGC+VDL GRAG L++A  +I       D  +W  LL +C+IH+NVE+ E+++K
Sbjct: 436 EAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVK 495

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            L +L+A+++G YVLL+ IYA  +  + V R R L+K+  I+  PG+S  E+  +++ F 
Sbjct: 496 RLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFY 555

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDF--LEKSSAY--HSEK 498
           V DKSHP    IY  LE+++ R +  GY  +      +GS   D    EK SA   HSEK
Sbjct: 556 VGDKSHPQHIEIYSYLEKLLERMQEAGYVPN------TGSVLHDLDEEEKESALRIHSEK 609

Query: 499 LAIAFGLATTPDGTSLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCS 546
           LA+AF L  +   + + I+KNLR  +              R++I+RD  R+HHF+DGLCS
Sbjct: 610 LAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCS 669

Query: 547 CGDYW 551
           C DYW
Sbjct: 670 CRDYW 674



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 126/247 (51%), Gaps = 4/247 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML-MASL 84
           +L+SYA   S  L  A+ +F+ ++     +WNS+I  +AQ+    +AI  Y+ ML +   
Sbjct: 239 MLDSYAKGGSRDLEVARKVFDTMER-DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGG 297

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
            + +    +  L AC    A+   + +H  V+R G E  V V T+++  Y+  G +E A 
Sbjct: 298 IKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMAS 357

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
             F  + E++++SW+++I+ Y       EAL+++  M+   +  +  T + +L++C+H G
Sbjct: 358 RAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAG 417

Query: 205 ALNMGIFLHR-IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSM 262
            L+ G + +  +  E G    V     +VD+  + G LD A+ +   M+ K D   W ++
Sbjct: 418 LLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGAL 477

Query: 263 IVGYGVH 269
           +    +H
Sbjct: 478 LSACRIH 484


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/527 (35%), Positives = 293/527 (55%), Gaps = 16/527 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +   ++     +W S+I  + Q     +A+  +  M    +  PD         
Sbjct: 397 LDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGV-WPDNIGLASAAS 455

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  +KA+ +  ++H  V  SGY   + +   L+  YA  G  E A S+F  +  +D ++
Sbjct: 456 ACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEIT 515

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN +IS + Q+  + +AL ++ +M       + FT +  +S+ A++  +  G  +H  A 
Sbjct: 516 WNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAV 575

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G      V NAL+ +Y KCG+++ A  +FS M  R+ +SWN++I     HGRG EA+ 
Sbjct: 576 KTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALD 635

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM   G  P+ +TF+G+L  CSH GLVEEG+ YF  M + Y L P   HY C+VD+ 
Sbjct: 636 LFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDIL 695

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAG+L++A   ++     ++ ++WRTLL +CK+H+N+EIGE+A K+L++LE   +  YV
Sbjct: 696 GRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYV 755

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+  YA T       + RK++K  GI+  PG SWIE+ N VH F V D+ HP +D IY+
Sbjct: 756 LLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYK 815

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            L E+  R   IGY ++     +     ++  + ++  HSEKLA+AFGL T P    LR+
Sbjct: 816 FLSELNDRLSKIGYKQENP--NLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRV 873

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +KNLR            S    R++++RD  R+HHF  G CSCGDYW
Sbjct: 874 IKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 189/394 (47%), Gaps = 8/394 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A  +FN         WN ++ A+ Q +S L   F     + A+   P+ FT+   L+
Sbjct: 296 IETAHDIFNLGDRTNVVLWNLMLVAYGQ-ISDLAKSFEIFGQMQATGIHPNKFTYPCILR 354

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C     +   +++H   I++G+E  + VS  L+  Y+    ++ AR + + + +RD+VS
Sbjct: 355 TCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVS 414

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W S+I+ Y Q  F  EAL  ++ M+   V  D   L    S+CA + A+  G+ +H    
Sbjct: 415 WTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVY 474

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             G+   + + N LV++YA+CG  + AF +F  +  +D ++WN +I G+G     ++A+ 
Sbjct: 475 VSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALM 534

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M  AG   +  TF+  +   ++   +++G +  H    +       +    L+ LY
Sbjct: 535 VFMKMSQAGAKYNVFTFISAISALANLADIKQGKQ-VHGRAVKTGHTSETEVANALISLY 593

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEIAMKNLVQLEAASAGDYV 396
           G+ G +E A  + +  S  + V W T++ SC  H R +E   + + + ++ E     D  
Sbjct: 594 GKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLE--ALDLFDQMKQEGLKPNDVT 651

Query: 397 LLATIYACTK---DEEGVARTRKLIKSNGIKTTP 427
            +  + AC+     EEG++  + +    G+   P
Sbjct: 652 FIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIP 685



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 192/422 (45%), Gaps = 6/422 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S   A+ +F  +       +N+LI   AQ      A+  ++ M ++ L RPD  T    L
Sbjct: 194 SFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGL-RPDCVTVASLL 252

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  V  L K ++LH +++++G     +   +L+  Y   G IE A  +F+     ++V
Sbjct: 253 AACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVV 312

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            WN ++  Y Q S   ++ +++ +M+   +  + FT  C+L +C   G + +G  +H ++
Sbjct: 313 LWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLS 372

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF   +YV   L+DMY+K   LD A  +   + KRDV+SW SMI GY  H   +EA+
Sbjct: 373 IKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEAL 432

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           + FK+M   G  PD+I        C+    + +G++  H  V        I  +  LV+L
Sbjct: 433 ATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNL 491

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           Y R G+ E+A  +       D + W  L+      R  E   +    + Q   A    + 
Sbjct: 492 YARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQ-AGAKYNVFT 550

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
            ++ I A     +   +  K +    +KT    S  E+ N +        S  DA MI+ 
Sbjct: 551 FISAISALANLAD--IKQGKQVHGRAVKTGHT-SETEVANALISLYGKCGSIEDAKMIFS 607

Query: 457 KL 458
           ++
Sbjct: 608 EM 609



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 158/326 (48%), Gaps = 2/326 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F ++ +    +W +++  +AQ     +A   Y+ M   ++  P  +  +  L AC 
Sbjct: 97  ARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVI-PTPYVLSSVLSACT 155

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           + K   + + +H  V +  +     V   L+  Y   G  + A  VF +M   D V++N+
Sbjct: 156 KGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNT 215

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS + Q      AL++++ M+   +  D  T+  LL++CA VG L  G  LH    + G
Sbjct: 216 LISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAG 275

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
                    +L+D+Y KCG++++A  +F+   + +V+ WN M+V YG      ++   F 
Sbjct: 276 MSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFG 335

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QM   G HP+  T+  +L  C+  G +E G E  H +  +   +  +   G L+D+Y + 
Sbjct: 336 QMQATGIHPNKFTYPCILRTCTCTGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKY 394

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLG 366
             L+KA +++      D V W +++ 
Sbjct: 395 RCLDKARKILEMLEKRDVVSWTSMIA 420



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 186/420 (44%), Gaps = 41/420 (9%)

Query: 92  FTFTLKACE-RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
            T  L+AC  R        E+H   +  G     ++   L+  YA NG++  AR VF  +
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
             RD VSW +++S Y Q     EA +LY +M +  V    + L  +LS+C        G 
Sbjct: 105 SSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H    +  F    +VGNAL+ +Y   G+   A  VF  M   D +++N++I G+   G
Sbjct: 165 MIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCG 224

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH- 329
            G+ A+  F +M ++G  PD +T   LL  C+  G +++G +     +  Y LK G+   
Sbjct: 225 HGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQ-----LHSYLLKAGMSFD 279

Query: 330 ---YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEI-----AM 381
               G L+DLY + G +E A ++ N    ++ VLW  +L        V  G+I     + 
Sbjct: 280 YITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLML--------VAYGQISDLAKSF 331

Query: 382 KNLVQLEAA----SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
           +   Q++A     +   Y  +     CT   E   +   L   NG ++    S + I + 
Sbjct: 332 EIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLI-DM 390

Query: 438 VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSE 497
             K+   DK+        RK+ E++ +   + +T       ++G    DF E++ A   E
Sbjct: 391 YSKYRCLDKA--------RKILEMLEKRDVVSWTS-----MIAGYVQHDFCEEALATFKE 437



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 135/279 (48%), Gaps = 27/279 (9%)

Query: 11  GLNKARQAHEIHGEWLLNSYA--ISVSSSLS--YAQL--------LFNQIQNPQTQAWNS 58
           G+   RQ  +IH    ++ YA  IS+ ++L   YA+         LF +I +     WN 
Sbjct: 459 GIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNG 518

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           LI  F QS    QA+  +  M  A  ++ + FTF   + A   +  + + +++HG  +++
Sbjct: 519 LISGFGQSRLYEQALMVFMKMSQAG-AKYNVFTFISAISALANLADIKQGKQVHGRAVKT 577

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G+     V+  L+  Y   G IE A+ +F  M  R+ VSWN+II+  +Q    LEAL L+
Sbjct: 578 GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLF 637

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA-- 236
           ++M+ E +  +  T + +L++C+HVG +  G+   +       + +VY  N + D YA  
Sbjct: 638 DQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFK------SMSNVYGLNPIPDHYACV 691

Query: 237 -----KCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVH 269
                + G LD A      M    + + W +++    VH
Sbjct: 692 VDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVH 730


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 203/528 (38%), Positives = 291/528 (55%), Gaps = 17/528 (3%)

Query: 37   SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
            S+  A+LLF+++       WN++I   AQ     +A+  +  M       PD  TF   L
Sbjct: 574  SIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFI-PDATTFINIL 632

Query: 97   KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
             A    +AL   +E+H     +G    + V   L+  Y+  G ++ A+ VFD+M ER++ 
Sbjct: 633  SANVDEEALEWVKEVHSHATDAGLVD-LRVGNALVHTYSKCGNVKYAKQVFDDMVERNVT 691

Query: 157  SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            +W  +I    Q     +A   + +M  E +  D  T V +LS+CA  GAL     +H  A
Sbjct: 692  TWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHA 751

Query: 217  CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
               G V  + VGNALV MYAKCG++D A  VF  M +RDV SW  MI G   HGRG EA+
Sbjct: 752  VSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEAL 811

Query: 277  SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             FF +M   GF P+  +++ +L  CSH GLV+EG   F  M   Y ++P ++HY C+VDL
Sbjct: 812  DFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDL 871

Query: 337  YGRAGKLEKA-LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
             GRAG LE+A L ++N     D   W  LLG+C  + N+E+ E A K  ++L+  SA  Y
Sbjct: 872  LGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTY 931

Query: 396  VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
            VLL+ IYA T   E     R +++  GI+  PG SWIE+ N++H FVV D SHP++  IY
Sbjct: 932  VLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIY 991

Query: 456  RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
             +L +++ R K  GY  D  LV    ++ ++  E++   HSEKLAI +GL  T     +R
Sbjct: 992  AQLNDLIERLKAKGYVPDTRLVL--RNTDQEHKEQALCSHSEKLAIVYGLMHTQSKDPIR 1049

Query: 516  IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + KNLR            S    R+++ RD  R+HHF+DG+CSCGDYW
Sbjct: 1050 VYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 159/330 (48%), Gaps = 2/330 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F+++       W ++I  +A+      A+  Y+ M      +P+  T+   LK
Sbjct: 169 LQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKM-RQECGQPNEITYLSILK 227

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC     L   +++H  +I+SG++  V V T L+  Y   G IE A+ +FD M ER+++S
Sbjct: 228 ACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVIS 287

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W  +I          EA  L+ +M+ E    + +T V +L++ A  GAL     +H  A 
Sbjct: 288 WTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAV 347

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             G    + VGNALV MYAK G++D A  VF  M +RD+ SW  MI G   HGRG EA S
Sbjct: 348 NAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFS 407

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVE-EGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
            F QM   G  P+  T+L +L   +       E V+  H           ++    L+ +
Sbjct: 408 LFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHM 467

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           Y + G ++ A  V +     D + W  ++G
Sbjct: 468 YAKCGSIDDARLVFDGMCDRDVISWNAMMG 497



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 150/284 (52%), Gaps = 1/284 (0%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D+F++   L+ C + + +   +++H  +I+SG E+ + V+  L+R Y   G ++ AR VF
Sbjct: 117 DSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D + ++++  W ++I  Y +     +A+++Y++MR E    +  T + +L +C     L 
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLK 236

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  +H    + GF   V V  ALV+MY KCG+++ A  +F +M +R+V+SW  MI G  
Sbjct: 237 WGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLA 296

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +GRG EA   F QM   GF P+S T++ +L   +  G + E V+  H       L   +
Sbjct: 297 HYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGAL-EWVKEVHSHAVNAGLALDL 355

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +    LV +Y ++G ++ A  V +  +  D   W  ++G    H
Sbjct: 356 RVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQH 399



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 198/452 (43%), Gaps = 34/452 (7%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM- 81
           G  L++ YA   S S+  A+++F+ +      +W  +I   AQ     +A   +  M   
Sbjct: 358 GNALVHMYA--KSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRN 415

Query: 82  ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
             L    T+       A     AL   + +H     +G+   + +   L+  YA  G I+
Sbjct: 416 GCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSID 475

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            AR VFD M +RD++SWN+++    Q     EA  ++ +M+ E +  D  T + LL++  
Sbjct: 476 DARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHG 535

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
              AL     +H+ A E G +    VG+A + MY +CG++D A  +F ++  R V +WN+
Sbjct: 536 STDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNA 595

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR- 320
           MI G      G EA+S F QM   GF PD+ TF+ +L       + EE +E+   + S  
Sbjct: 596 MIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSA----NVDEEALEWVKEVHSHA 651

Query: 321 -----YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
                 +L+ G      LV  Y + G ++ A +V +     +   W  ++G    H    
Sbjct: 652 TDAGLVDLRVG----NALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQH---G 704

Query: 376 IGEIAMKNLVQLE----AASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSW 431
            G  A  + +Q+        A  YV + +  A T   E V        S G+ +      
Sbjct: 705 CGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSD----- 759

Query: 432 IEIGNQ-VHKFV----VDDKSHPDADMIYRKL 458
           + +GN  VH +     +DD      DM+ R +
Sbjct: 760 LRVGNALVHMYAKCGSIDDARSVFDDMVERDV 791



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 91/183 (49%), Gaps = 1/183 (0%)

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           + + +D F+ V +L  C     + +   +H    + G  +++YV N L+ +Y +CG L  
Sbjct: 112 QGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQC 171

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  VF ++ K+++  W +MI GY  +G  ++A+  + +M      P+ IT+L +L  C  
Sbjct: 172 ARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCC 231

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
              ++ G +  H  + +   +  ++    LV++Y + G +E A  + +     + + W  
Sbjct: 232 PVNLKWG-KKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTV 290

Query: 364 LLG 366
           ++G
Sbjct: 291 MIG 293


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 204/571 (35%), Positives = 309/571 (54%), Gaps = 49/571 (8%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S +  L  A  +F  +      +WN++I AFA    P +A+  +  M M  + 
Sbjct: 214 LINFYGSSGAPDL--AHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDV- 270

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +P+  T    L AC +   L   + +  ++  +G+   ++++  ++  Y   G I  A+ 
Sbjct: 271 KPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKD 330

Query: 146 VFDNMPERDLVSW-------------------------------NSIISCYTQASFHLEA 174
           +F+ M E+D+VSW                               N++IS Y Q      A
Sbjct: 331 LFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVA 390

Query: 175 LKLYERMRF-EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           L L+  M+  +D   D  TL+C L + A +GA++ G ++H    +     + ++  +L+D
Sbjct: 391 LSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLD 450

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MYAKCGNL+ A  VF  + ++DV  W++MI    ++G+G  A+  F  ML A   P+++T
Sbjct: 451 MYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVT 510

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F  +LC C+H GLV EG + F  M   Y + P I+HY C+VD++GRAG LEKA   I   
Sbjct: 511 FTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKM 570

Query: 354 S-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
             P    +W  LLG+C  H NVE+ E+A +NL++LE  + G +VLL+ IYA   D E V+
Sbjct: 571 PIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVS 630

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
             RKL++ + +K  P  S I++   VH+F+V D SHP +  IY KL+EI  + K IGY  
Sbjct: 631 NLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKP 690

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           D S + +  S  ++ +E+S   HSEKLAIAFGL +T     +RIVKN+R           
Sbjct: 691 DMSNL-LQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKL 749

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S  Y RD+++RDR R+HHFR G CSC DYW
Sbjct: 750 VSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 118/374 (31%), Positives = 193/374 (51%), Gaps = 33/374 (8%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL +YAIS  S L YA+ +FNQI  P    WN+LIR +A S  P Q+   + HML +   
Sbjct: 110 LLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSE 169

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+ FTF F  KA  R+K L+    LHG VI++     + +  +L+  Y ++G  + A  
Sbjct: 170 FPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHR 229

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF NMP +D+VSWN++I+ +       +AL L++ M  +DV  +  T+V +LS+CA    
Sbjct: 230 VFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKID 289

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G ++       GF E + + NA++DMY KCG ++ A  +F++M ++D++SW +M+ G
Sbjct: 290 LEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDG 349

Query: 266 YGVHGRGDEAISFFKQM-----------------------LMAGFH---------PDSIT 293
           +   G  DEA   F  M                        ++ FH         PD +T
Sbjct: 350 HAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVT 409

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
            +  LC  +  G ++ G  + H+ + ++++         L+D+Y + G L KA+EV +  
Sbjct: 410 LICALCASAQLGAIDFG-HWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAV 468

Query: 354 SPSDPVLWRTLLGS 367
              D  +W  ++G+
Sbjct: 469 ERKDVYVWSAMIGA 482



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 128/260 (49%), Gaps = 4/260 (1%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGV--IEAARSVFDNMPERDLVSWNSIISCYT 166
           +++H  ++R+        ++ L+  YA +    +  A++VF+ +P+ +L  WN++I  Y 
Sbjct: 89  KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYA 148

Query: 167 QASFHLEALKLYERMRFEDVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV 225
            +S   ++  ++  M        + FT   L  + + +  L++G  LH +  +      +
Sbjct: 149 SSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDL 208

Query: 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
           ++ N+L++ Y   G  D A  VF+ M  +DV+SWN+MI  + + G  D+A+  F++M M 
Sbjct: 209 FILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMK 268

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
              P+ IT + +L  C+ +  +E G  +    +        +     ++D+Y + G +  
Sbjct: 269 DVKPNVITMVSVLSACAKKIDLEFG-RWICSYIENNGFTEHLILNNAMLDMYVKCGCIND 327

Query: 346 ALEVINTSSPSDPVLWRTLL 365
           A ++ N  S  D V W T+L
Sbjct: 328 AKDLFNKMSEKDIVSWTTML 347



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 4/145 (2%)

Query: 226 YVGNALVDMYA--KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           Y  + L+  YA   C  L  A  VF+++ + ++  WN++I GY       ++   F  ML
Sbjct: 105 YTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHML 164

Query: 284 MA-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
            +    P+  TF  L    S   ++  G    H MV + +L   +     L++ YG +G 
Sbjct: 165 HSCSEFPNKFTFPFLFKAASRLKVLHLG-SVLHGMVIKASLSSDLFILNSLINFYGSSGA 223

Query: 343 LEKALEVINTSSPSDPVLWRTLLGS 367
            + A  V       D V W  ++ +
Sbjct: 224 PDLAHRVFTNMPGKDVVSWNAMINA 248


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 198/530 (37%), Positives = 295/530 (55%), Gaps = 31/530 (5%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           LS A+ LF ++      AW +++  F Q+    +A   +  M        +  ++   + 
Sbjct: 262 LSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM-----PEKNEVSWNAMIA 316

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
              + + + K +EL   +      R       ++ GYA  G I+ A+ +FD MP+RD +S
Sbjct: 317 GYVQSQQIEKARELFDQMP----SRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCIS 372

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++IS Y Q+    EAL L+ +M+ +   L+   L C LSSCA + AL +G  LH    
Sbjct: 373 WAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLV 432

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + GF      GNAL+ MY KCG+++ AF VF  + ++D++SWN+MI GY  HG G EA++
Sbjct: 433 KAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALA 492

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+ M M    PD +T +G+L  CSH G V++G+EYF+ M   Y +    KHY C++DL 
Sbjct: 493 LFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLL 551

Query: 338 GRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GRAG+L++AL ++  S P   D   W  LLG+ +IH + E+GE A + + ++E  ++G Y
Sbjct: 552 GRAGRLDEALNLMK-SMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMY 610

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ +YA +     V   R  ++  G+K  PG+SW+EI N+ H F V D SHP+A+ IY
Sbjct: 611 VLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIY 670

Query: 456 RKLEEIMHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
             LEE+    K  G+     LV   V     E  L+    YHSEKLA+AFG+ + P G  
Sbjct: 671 AYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLK----YHSEKLAVAFGILSIPPGRP 726

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R++KNLR            S    R +IVRD  R+HHF +G CSCGDYW
Sbjct: 727 IRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 166/368 (45%), Gaps = 49/368 (13%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           + +LS A+ LFNQ+      +WN+++  FAQ+    +A   ++ ML+      +  ++  
Sbjct: 135 NGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV-----KNEISWNG 189

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTN-LMRGYAANGVIEAARSVFDNMPER 153
            L A  +   +   + L  F  +  +E   +VS N LM GY     ++ ARS+FD MP R
Sbjct: 190 LLSAYVQNGRIEDARRL--FDSKMDWE---IVSWNCLMGGYVRKKRLDDARSLFDRMPVR 244

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           D +SWN +I+ Y Q     EA +L+E +   DV    F    ++S     G L+      
Sbjct: 245 DKISWNIMITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEAT--- 297

Query: 214 RIACEM-------------GFVESVYVG-----------------NALVDMYAKCGNLDS 243
           RI  EM             G+V+S  +                  N +V  YA+CGN+D 
Sbjct: 298 RIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQ 357

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F  M +RD +SW +MI GY   G+ +EA+  F +M   G   +       L  C+ 
Sbjct: 358 AKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAE 417

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
              +E G +  H  + +   + G      L+ +YG+ G +E+A +V    +  D V W T
Sbjct: 418 IAALELGKQ-LHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNT 476

Query: 364 LLGSCKIH 371
           ++     H
Sbjct: 477 MIAGYARH 484



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 148/304 (48%), Gaps = 28/304 (9%)

Query: 125 VVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           ++S N+M  GY  NG + AAR++F+ MPE+D+VSWN+++S + Q  F  EA K++++M  
Sbjct: 122 LISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV 181

Query: 184 E-DVGLDGFTLVCLLSSCAHVGALNMG--IFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           + ++  +G     LLS+    G +     +F  ++  E      +   N L+  Y +   
Sbjct: 182 KNEISWNG-----LLSAYVQNGRIEDARRLFDSKMDWE------IVSWNCLMGGYVRKKR 230

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           LD A  +F RM  RD +SWN MI GY  +G   EA   F+++ +     D   +  ++ G
Sbjct: 231 LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR----DVFAWTAMVSG 286

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
               G+++E    F  M  +  +      +  ++  Y ++ ++EKA E+ +     +   
Sbjct: 287 FVQNGMLDEATRIFEEMPEKNEVS-----WNAMIAGYVQSQQIEKARELFDQMPSRNTSS 341

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT-KDEEGVARTRKLIK 419
           W T++       N++  +I    + Q +  S   +  + + YA + + EE +    K+ +
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCIS---WAAMISGYAQSGQSEEALHLFIKMKR 398

Query: 420 SNGI 423
             GI
Sbjct: 399 DGGI 402



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 32/165 (19%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM------ 282
           N  +  Y + G  +SA  VF+ MR+R  +++N+MI GY  + + D A   F++M      
Sbjct: 64  NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLI 123

Query: 283 ----LMAGF-----------------HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
               +++G+                   D +++  +L G +  G VEE  + F  M+ + 
Sbjct: 124 SWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKN 183

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            +      +  L+  Y + G++E A  + ++    + V W  L+G
Sbjct: 184 EIS-----WNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMG 223


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 205/566 (36%), Positives = 315/566 (55%), Gaps = 30/566 (5%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAIS-VSSSLSYAQLLFNQIQNPQTQAWNSL 59
           +GL+ H+  + +  A  A    G  L++ YA S +  ++ YA  +F ++      +W +L
Sbjct: 272 LGLQLHSLALRMGLASDACVSCG--LVDMYAKSNIGQAMDYANKVFERMPKNDVISWTAL 329

Query: 60  IRAFAQS-LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           I  + QS +   + +  +  ML  S+ +P+  T++  LK+C  +   +  +++H  VI+S
Sbjct: 330 ISGYVQSGVQENKVMALFGEMLNESI-KPNHITYSSILKSCASISDHDSGRQVHAHVIKS 388

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
                  V   L+  YA +G +E AR VF+ + ER      S+I C T+         L 
Sbjct: 389 NQASAHTVGNALVSMYAESGCMEEARRVFNQLYER------SMIPCITEG----RDFPLD 438

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
            R+   DVG+   T   L+S+ A VG L  G  LH ++ + GF    +V N+LV MY++C
Sbjct: 439 HRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRC 498

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G L+ A   F+ ++ R+V+SW SMI G   HG  + A+S F  M++ G  P+ +T++ +L
Sbjct: 499 GYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVL 558

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSD 357
             CSH GLV EG EYF  M   + L P ++HY C+VDL  R+G +++ALE IN     +D
Sbjct: 559 SACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKAD 618

Query: 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
            ++W+TLLG+C+ H N+E+GEI  KN+V+LE      YVLL+ +YA     + VAR R  
Sbjct: 619 ALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSA 678

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV 477
           ++ N +    G SW+E+ N  H+F   D SHP A  IY KL+ ++ + K +GY  D S+V
Sbjct: 679 MRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIV 738

Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
                 S++  E+    HSEK+A+AFGL TT     +RI KNLR            S A 
Sbjct: 739 L--HDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKAT 796

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R++I+RD  R+H  +DG CSCG+YW
Sbjct: 797 RREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 119/232 (51%), Gaps = 5/232 (2%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V V + L+   A NG + +AR VFD + E+ +V W  +IS Y Q     EA++L+     
Sbjct: 188 VAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLE 247

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG---N 240
           +    D +T+  ++S+C  +G++ +G+ LH +A  MG      V   LVDMYAK      
Sbjct: 248 DGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQA 307

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHG-RGDEAISFFKQMLMAGFHPDSITFLGLLC 299
           +D A  VF RM K DV+SW ++I GY   G + ++ ++ F +ML     P+ IT+  +L 
Sbjct: 308 MDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILK 367

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
            C+     + G +  H  V + N          LV +Y  +G +E+A  V N
Sbjct: 368 SCASISDHDSGRQ-VHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFN 418



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 127/275 (46%), Gaps = 30/275 (10%)

Query: 109 QELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVSWNSIISCYT 166
           + LH  ++R    +R  VV+ +L+  Y+  G + +AR+VFD M   RD+VSW ++ SC  
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLA 127

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC--------- 217
           +      +L L   M    +  + +TL     +C          F H + C         
Sbjct: 128 RNGAERGSLLLIGEMLESGLLPNAYTLCAAAHAC----------FPHELYCLVGGVVLGL 177

Query: 218 --EMG-FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR-GD 273
             +MG +   V VG+AL+DM A+ G+L SA  VF  + ++ V+ W  +I  Y V G   +
Sbjct: 178 VHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRY-VQGECAE 236

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           EA+  F   L  GF PD  T   ++  C+  G V  G++  H +  R  L         L
Sbjct: 237 EAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGLASDACVSCGL 295

Query: 334 VDLYGRAG---KLEKALEVINTSSPSDPVLWRTLL 365
           VD+Y ++     ++ A +V      +D + W  L+
Sbjct: 296 VDMYAKSNIGQAMDYANKVFERMPKNDVISWTALI 330


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 210/576 (36%), Positives = 316/576 (54%), Gaps = 63/576 (10%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS--PLQAIFYYNHMLMASLSRPDTFTFTF 94
            L YA  +FNQ+      +WN++IR F++S     L AI  +  M+      P+ FTF  
Sbjct: 67  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPS 126

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR---------------------- 132
            LKAC +   + + +++HG  ++ G+     V +NL+R                      
Sbjct: 127 VLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIER 186

Query: 133 -----------------------GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
                                  GY   G  +AAR +FD M +R +VSWN++IS Y+Q  
Sbjct: 187 EMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNG 246

Query: 170 FHLEALKLYERMRF-EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
           F  +A++++  M+  ED+  +  TLV +L + + +G+L +G +LH  A + G      +G
Sbjct: 247 FFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLG 306

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           +AL+DMY+KCG ++ A  VF R+ + +V++W++MI G+ +HG+  +AI  F +M  AG  
Sbjct: 307 SALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 366

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           P  + ++ LL  CSH GLVEEG  YF  MVS   L+P I+HYGC+VDL GR G L++A E
Sbjct: 367 PSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEE 426

Query: 349 -VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407
            ++N     D V+W+ LLG+C++HRNVE+G+     L+ +    +G YV L+ +YA   +
Sbjct: 427 FILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGN 486

Query: 408 EEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF 467
              V+  R  +K   I+  PG SWI+I   +H+F+V+D SHP A  I   L EI  + + 
Sbjct: 487 WSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRL 546

Query: 468 IGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------ 521
            GY    + V +  +  E+  E +  YHSEK+A AFGL +T  G  +RIVKNLR      
Sbjct: 547 AGYRPITTQVLL--NLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCH 604

Query: 522 ------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                 S  Y R + VRDR R+HHF+DG CSC DYW
Sbjct: 605 SSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 204/541 (37%), Positives = 303/541 (56%), Gaps = 49/541 (9%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WN+LI    +S     +   +  M+ AS +     T+   L AC + K L    ++H  V
Sbjct: 129 WNALISGHNRSGRFELSCCSFVDMVRAS-AMATAVTYVSVLSACGKGKDLLLGMQVHKRV 187

Query: 116 IRSG--------------YERC-----------------VVVSTNLMRGYAANGVIEAAR 144
           + SG              Y  C                 +   T+++ G   +G ++ AR
Sbjct: 188 LESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRAR 247

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            +FD+MPERD ++W ++I  Y Q     +AL+ +  M+   V  D FT+V ++++CA +G
Sbjct: 248 DLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLG 307

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL  G +       +G    V+VGNAL+DMY+KCG+++ A  VF  M  RD  +W ++I+
Sbjct: 308 ALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIIL 367

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           G  V+GRG+EAI  F +ML A   PD +TF+G+L  C+H GLV++G E+F  M   YN+ 
Sbjct: 368 GLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNIS 427

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMK 382
           P + HYGCL+D+ GRAGKL++AL+ I+   P  P   +W TLL SC+++ N EIGE+A +
Sbjct: 428 PTVVHYGCLIDVLGRAGKLKEALDTID-KMPMKPNSTIWGTLLASCRVYGNSEIGELAAE 486

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            L++L+  ++  Y+LL+ +YA +   + V R R++I   GIK  PG S IE+   +H+FV
Sbjct: 487 RLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFV 546

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             D+SHP    IY KLE ++   +  GY  D + V V  +  E   +K   +HSEKLA+ 
Sbjct: 547 AADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEK--QKVLYWHSEKLAVT 604

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           F L T+     +RIVKNLR            S  Y R++IVRDR R+HHFR G CSC DY
Sbjct: 605 FALLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDY 664

Query: 551 W 551
           W
Sbjct: 665 W 665



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 182/415 (43%), Gaps = 59/415 (14%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +LS A+ L + I + + +A +S +          +A+  Y  ML A  +RPD +TF   L
Sbjct: 4   ALSRARSLLDGIPHRRGRAASSSVSGHGAE----EAVAGYVRML-AGGARPDAYTFPSLL 58

Query: 97  KACERVKALNKCQE-----LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR------- 144
           KA    +            +H  V++ G E     +++L+  YAA G   AAR       
Sbjct: 59  KAAAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAAC 118

Query: 145 -SVFDNMPERDLVSWNSIISCYTQAS-FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
            +     P    V WN++IS + ++  F L      + +R   +     T V +LS+C  
Sbjct: 119 LATGGGAP----VMWNALISGHNRSGRFELSCCSFVDMVRASAMA-TAVTYVSVLSACGK 173

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---------- 252
              L +G+ +H+   E G +    V NALVDMYA+CG++D+A+ +F  M+          
Sbjct: 174 GKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSV 233

Query: 253 ---------------------KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
                                +RD ++W +MI GY   GR  +A+  F+ M +     D 
Sbjct: 234 ISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADE 293

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
            T + ++  C+  G +E G E+  + + R  +K  +     L+D+Y + G +E+AL+V  
Sbjct: 294 FTMVSVVTACAQLGALETG-EWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFK 352

Query: 352 TSSPSDPVLWRT-LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
                D   W   +LG     R  E  ++  + L  L+  +  +   +  + ACT
Sbjct: 353 DMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQ--TPDEVTFVGVLTACT 405



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 3/241 (1%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  +  A+ LF+ +    T AW ++I  + Q      A+  + +M +  + R D FT   
Sbjct: 240 SGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKV-RADEFTMVS 298

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            + AC ++ AL   +    ++ R G +  V V   L+  Y+  G IE A  VF +M  RD
Sbjct: 299 VVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRD 358

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLH 213
             +W +II          EA+ ++ RM       D  T V +L++C H G ++ G  F  
Sbjct: 359 KFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFL 418

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDVLSWNSMIVGYGVHGRG 272
            +        +V     L+D+  + G L  A     +M  K +   W +++    V+G  
Sbjct: 419 SMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNS 478

Query: 273 D 273
           +
Sbjct: 479 E 479


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 199/563 (35%), Positives = 299/563 (53%), Gaps = 61/563 (10%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S     A+ +FN + +    AW  LI  F Q     +++  +N M  A L   D F    
Sbjct: 338 SGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQM-RAELMTLDQFALAT 396

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVS--------------------------- 127
            +  C     L   ++LH   ++SG  + VVVS                           
Sbjct: 397 LISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKD 456

Query: 128 ----TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
               T+++  Y+  G +  AR  FD M E+++++WN+++  Y Q     + L++Y+ M  
Sbjct: 457 IVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLS 516

Query: 184 ED-VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
           E+ V  D  T V L   CA +GA  +G  +     ++G +    V NA++ MY+KCG + 
Sbjct: 517 EEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRIL 576

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A  VF  +  +D++SWN+MI GY  HG G +AI  F  +L  G  PD I+++ +L GCS
Sbjct: 577 EARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCS 636

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--L 360
           H GLV+EG  YF MM   +N+ PG++H+ C+VDL GRAG L +A ++I+   P  P   +
Sbjct: 637 HSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLID-DMPMKPTAEV 695

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           W  LL +CKIH N E+ E+A K++ +L++  +G Y+L+A IYA     +  A+ RKL++ 
Sbjct: 696 WGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRD 755

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
            GIK  PG+SW+E+ N+VH F  DD SHP    I +KL+E+M +   +GY + +S     
Sbjct: 756 KGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDS----- 810

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
                    +S  +HSEKLA+AFGL T P    + I+KNLR            S    R+
Sbjct: 811 --------TRSEIHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGRE 862

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
            ++RD VR+HHF  G CSCGDYW
Sbjct: 863 FVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 155/288 (53%), Gaps = 5/288 (1%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           + +A  LF+ +      +WN ++ A +QS    +A+     M    + R D+ T+T +L 
Sbjct: 240 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV-RLDSTTYTSSLT 298

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC R+ +L   ++LH  VIR+       V++ L+  YA +G  + A+ VF+++ +R+ V+
Sbjct: 299 ACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVA 358

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W  +IS + Q     E+++L+ +MR E + LD F L  L+S C     L +G  LH +  
Sbjct: 359 WTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCL 418

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G +++V V N+L+ MYAKC NL SA  +F  M ++D++SW SMI  Y   G   +A  
Sbjct: 419 KSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKARE 478

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           FF  M       + IT+  +L      G  E+G+  + +M+S   ++P
Sbjct: 479 FFDGM----SEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRP 522



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 188/444 (42%), Gaps = 66/444 (14%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           +LN YA      LS A  LF ++      +WN+L+  + QS   L ++  +  M  +  S
Sbjct: 97  MLNGYA--KLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDS 154

Query: 86  RPDTFTFTFTLKACERVK----ALNKCQELHGFVIRSGYE----------RCVVVS---- 127
            P+ FT    +K+C  +     AL     +  F  +   E          RC  V     
Sbjct: 155 WPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASR 214

Query: 128 -------------TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
                         +++ GY     ++ A  +FD+MPERD+VSWN ++S  +Q+    EA
Sbjct: 215 LFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREA 274

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH-RIACEMGFVESVYVGNALVD 233
           L +   M+ + V LD  T    L++CA + +L  G  LH ++   +  ++  YV +ALV+
Sbjct: 275 LDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDP-YVASALVE 333

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           +YAK G    A  VF+ +  R+ ++W  +I G+  +G   E++  F QM       D   
Sbjct: 334 LYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFA 393

Query: 294 FLGLLCGCS-----------HQGLVEEG----VEYFHMMVSRY----NLKPG-------- 326
              L+ GC            H   ++ G    V   + ++S Y    NL+          
Sbjct: 394 LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN 453

Query: 327 ---IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
              I  +  ++  Y + G + KA E  +  S  + + W  +LG+   H   E G + M  
Sbjct: 454 EKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDG-LRMYK 512

Query: 384 LVQLEAASAGDYVLLATIYACTKD 407
           ++  E     D+V   T++    D
Sbjct: 513 VMLSEEYVRPDWVTYVTLFKGCAD 536



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 141/315 (44%), Gaps = 39/315 (12%)

Query: 125 VVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-R 182
           V++ N+M  GYA  G +  A  +F  MP RD+ SWN+++S Y Q+  +L +L+ +  M R
Sbjct: 91  VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 150

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
             D   + FTL C + SC  +G  ++ + L  +  +    +   V  ALVDM+ +CG +D
Sbjct: 151 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 210

Query: 243 SA------------FC-------------------VFSRMRKRDVLSWNSMIVGYGVHGR 271
            A            FC                   +F  M +RDV+SWN M+      GR
Sbjct: 211 LASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 270

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY- 330
             EA+     M   G   DS T+   L  C+    +  G +  H  V R NL P I  Y 
Sbjct: 271 VREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWG-KQLHAQVIR-NL-PHIDPYV 327

Query: 331 -GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
              LV+LY ++G  ++A  V N+    + V W T+L S  +        + + N ++ E 
Sbjct: 328 ASALVELYAKSGCFKEAKGVFNSLHDRNNVAW-TVLISGFLQYGCFTESVELFNQMRAEL 386

Query: 390 ASAGDYVLLATIYAC 404
            +   + L   I  C
Sbjct: 387 MTLDQFALATLISGC 401



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 8/256 (3%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           W     A S   +++ A+  F+ +       WN+++ A+ Q  +    +  Y  ML    
Sbjct: 460 WTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEY 519

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
            RPD  T+    K C  + A     ++ G  ++ G      V+  ++  Y+  G I  AR
Sbjct: 520 VRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEAR 579

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VFD +  +D+VSWN++I+ Y+Q     +A+++++ +       D  + V +LS C+H G
Sbjct: 580 KVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSG 639

Query: 205 ALNMGIFLHRIACEMGFVESVYVG----NALVDMYAKCGNLDSAFCVFSRMRKRDVLS-W 259
            +  G F   +   M    ++  G    + +VD+  + G+L  A  +   M  +     W
Sbjct: 640 LVQEGKFYFDM---MKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVW 696

Query: 260 NSMIVGYGVHGRGDEA 275
            +++    +HG  + A
Sbjct: 697 GALLSACKIHGNNELA 712



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 2/124 (1%)

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           +V   N +++ YAK G L  A  +F RM  RDV SWN+++ GY    +   ++  F  M 
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 284 MAGFH-PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
            +G   P++ T    +  C   G     ++    MV +++ +   +    LVD++ R G 
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQLL-AMVQKFDSQDDSEVAAALVDMFVRCGA 208

Query: 343 LEKA 346
           ++ A
Sbjct: 209 VDLA 212


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 189/527 (35%), Positives = 293/527 (55%), Gaps = 16/527 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +   ++     +W S+I  + Q     +A+  +  M    +  PD         
Sbjct: 397 LDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGV-WPDNIGLASAAS 455

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  +KA+ +  ++H  V  SGY   + +   L+  YA  G  E A S+F  +  +D ++
Sbjct: 456 ACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEIT 515

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN +IS + Q+  + +AL ++ +M       + FT +  +S+ A++  +  G  +H  A 
Sbjct: 516 WNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAV 575

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G      V NAL+ +Y KCG+++ A  +FS M  R+ +SWN++I     HGRG EA+ 
Sbjct: 576 KTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALD 635

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM   G  P+ +TF+G+L  CSH GLVEEG+ YF  M + Y L P   HY C+VD+ 
Sbjct: 636 LFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDIL 695

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAG+L++A   ++     ++ ++WRTLL +CK+H+N+EIGE+A K+L++LE   +  YV
Sbjct: 696 GRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYV 755

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+  YA T       + RK++K  GI+  PG SWIE+ N VH F V D+ HP +D IY+
Sbjct: 756 LLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYK 815

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            L E+  R   IGY ++     +     ++  + ++  HSEKLA+AFGL T P    LR+
Sbjct: 816 FLSELNDRLSKIGYKQENP--NLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRV 873

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +KNLR            S    R++++RD  R+HHF  G CSCGDYW
Sbjct: 874 IKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 189/394 (47%), Gaps = 8/394 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A  +FN         WN ++ A+ Q +S L   F     + A+   P+ FT+   L+
Sbjct: 296 IETAHDIFNLGDRTNVVLWNLMLVAYGQ-ISDLAKSFEIFGQMQATGIHPNQFTYPCILR 354

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C     +   +++H   I++G+E  + VS  L+  Y+  G ++ AR + + + +RD+VS
Sbjct: 355 TCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVS 414

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W S+I+ Y Q  F  EAL  ++ M+   V  D   L    S+CA + A+  G+ +H    
Sbjct: 415 WTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVY 474

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             G+   + + N LV++YA+CG  + AF +F  +  +D ++WN +I G+G      +A+ 
Sbjct: 475 VSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALM 534

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M  AG   +  TF+  +   ++   +++G +  H    +       +    L+ LY
Sbjct: 535 VFMKMGQAGAKYNVFTFISAISALANLADIKQGKQ-VHGRAVKTGHTSETEVANALISLY 593

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEIAMKNLVQLEAASAGDYV 396
           G+ G +E A  + +  S  + V W T++ SC  H R +E   + + + ++ E     D  
Sbjct: 594 GKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLE--ALDLFDQMKQEGLKPNDVT 651

Query: 397 LLATIYACTK---DEEGVARTRKLIKSNGIKTTP 427
            +  + AC+     EEG++  + +    G+   P
Sbjct: 652 FIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIP 685



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 162/329 (49%), Gaps = 2/329 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S   A+ +F  +       +N+LI   AQ      A+  ++ M ++ L RPD  T    L
Sbjct: 194 SFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGL-RPDCVTVASLL 252

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  V  L K ++LH +++++G     +   +L+  Y   G IE A  +F+     ++V
Sbjct: 253 AACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVV 312

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            WN ++  Y Q S   ++ +++ +M+   +  + FT  C+L +C   G + +G  +H ++
Sbjct: 313 LWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLS 372

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF   +YV   L+DMY+K G LD A  +   + KRDV+SW SMI GY  H   +EA+
Sbjct: 373 IKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEAL 432

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           + FK+M   G  PD+I        C+    + +G++  H  V        I  +  LV+L
Sbjct: 433 ATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNL 491

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           Y R G+ E+A  +       D + W  L+
Sbjct: 492 YARCGRSEEAFSLFREIEHKDEITWNGLI 520



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 160/326 (49%), Gaps = 2/326 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F ++ +    +W +++  +AQS    +A   Y+ M   ++  P  +  +  L AC 
Sbjct: 97  ARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVI-PTPYVLSSVLSACT 155

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           + K   + + +H  V +  +     V   L+  Y   G  + A  VF +M   D V++N+
Sbjct: 156 KGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNT 215

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS + Q      AL++++ M+   +  D  T+  LL++CA VG L  G  LH    + G
Sbjct: 216 LISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAG 275

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
                    +L+D+Y KCG++++A  +F+   + +V+ WN M+V YG      ++   F 
Sbjct: 276 MSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFG 335

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QM   G HP+  T+  +L  C+  G +E G E  H +  +   +  +   G L+D+Y + 
Sbjct: 336 QMQATGIHPNQFTYPCILRTCTCTGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKY 394

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLG 366
           G L+KA +++      D V W +++ 
Sbjct: 395 GCLDKARKILEMLEKRDVVSWTSMIA 420



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 136/279 (48%), Gaps = 10/279 (3%)

Query: 92  FTFTLKACE-RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
            T  L+AC  R        E+H   +  G     ++   L+  YA NG++  AR VF  +
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
             RD VSW +++S Y Q+    EA +LY +M +  V    + L  +LS+C        G 
Sbjct: 105 SSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H    +  F    +VGNAL+ +Y   G+   A  VF  M   D +++N++I G+   G
Sbjct: 165 MIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCG 224

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH- 329
            G+ A+  F +M ++G  PD +T   LL  C+  G +++G +     +  Y LK G+   
Sbjct: 225 HGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQ-----LHSYLLKAGMSFD 279

Query: 330 ---YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
               G L+DLY + G +E A ++ N    ++ VLW  +L
Sbjct: 280 YITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLML 318



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 136/279 (48%), Gaps = 27/279 (9%)

Query: 11  GLNKARQAHEIHGEWLLNSYA--ISVSSSLS--YAQL--------LFNQIQNPQTQAWNS 58
           G+   RQ  +IH    ++ YA  IS+ ++L   YA+         LF +I++     WN 
Sbjct: 459 GIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNG 518

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           LI  F QS    QA+  +  M  A  ++ + FTF   + A   +  + + +++HG  +++
Sbjct: 519 LISGFGQSRLYKQALMVFMKMGQAG-AKYNVFTFISAISALANLADIKQGKQVHGRAVKT 577

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G+     V+  L+  Y   G IE A+ +F  M  R+ VSWN+II+  +Q    LEAL L+
Sbjct: 578 GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLF 637

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA-- 236
           ++M+ E +  +  T + +L++C+HVG +  G+   +       + +VY  N + D YA  
Sbjct: 638 DQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFK------SMSNVYGLNPIPDHYACV 691

Query: 237 -----KCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVH 269
                + G LD A      M    + + W +++    VH
Sbjct: 692 VDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVH 730


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 212/545 (38%), Positives = 316/545 (57%), Gaps = 24/545 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S   S+  A+ +F++ +      WN+L RA   +    + +  Y  M    + 
Sbjct: 119 LINMY--SELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVP 176

Query: 86  RPDTFTFTFTLKACERVKA----LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
             D FT+T+ LKAC   +A    L   +E+HG ++R G+E  V + T L+  YA  G + 
Sbjct: 177 S-DRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVL 235

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSS 199
            A  VFD MP +++VSW+++I+CY++    LEAL+L+ +M  E+  L  +  T+V +L +
Sbjct: 236 NASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQA 295

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           CA + AL  G  +H      G    + V +ALV +YA+CGNL+    VF RM KRDV+SW
Sbjct: 296 CAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSW 355

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           NS+I  YG+HG G +AI  FK+M+  G  P  I+F+ +L  CSH GLVEEG   F  MV 
Sbjct: 356 NSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVR 415

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGE 378
            + + P ++HY C+VDL GRA +L++A ++I+       P +W +LLGSC+IH NVE+ E
Sbjct: 416 GHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAE 475

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
            A   L +LE  +AG+YVLLA IYA  K    V R + L+++ G++  PG S IEI  ++
Sbjct: 476 RATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKI 535

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           + F+  D+ +P  + ++  L ++    K  GY  D  +V       E   E+    HSEK
Sbjct: 536 YSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEK--ERIVLGHSEK 593

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LA+AFGL  +  G ++RI KNLR            S   +R+++VRD  R+H F+DG+CS
Sbjct: 594 LALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQDGVCS 653

Query: 547 CGDYW 551
           CGDYW
Sbjct: 654 CGDYW 658



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 156/321 (48%), Gaps = 12/321 (3%)

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
           N LI++  +  +  QA+      +++    P   T+   + +C R  +L +  +LH  +I
Sbjct: 51  NPLIQSLCKQGNLNQAL-----QVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLI 105

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
             G ++   ++T L+  Y+    I+ AR VFD   +R +  WN++    T A +  E L 
Sbjct: 106 HDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLD 165

Query: 177 LYERMRFEDVGLDGFTLVCLLSSC----AHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           LY RM    V  D FT   +L +C    A V  L  G  +H      GF   V++   L+
Sbjct: 166 LYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLL 225

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG--FHPD 290
           DMYA+ G + +A  VF +M  ++V+SW++MI  Y  +G+  EA+  F++M++      P+
Sbjct: 226 DMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPN 285

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
           S+T + +L  C+    +E+G +  H  + R  L   +     LV +Y R G LE    V 
Sbjct: 286 SVTMVSVLQACAALAALEQG-KLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVF 344

Query: 351 NTSSPSDPVLWRTLLGSCKIH 371
                 D V W +L+ S  IH
Sbjct: 345 ERMEKRDVVSWNSLISSYGIH 365


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/563 (35%), Positives = 299/563 (53%), Gaps = 61/563 (10%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S     A+ +FN + +    AW  LI  F Q     +++  +N M  A L   D F    
Sbjct: 318 SGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQM-RAELMTLDQFALAT 376

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVS--------------------------- 127
            +  C     L   ++LH   ++SG  + VVVS                           
Sbjct: 377 LISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKD 436

Query: 128 ----TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
               T+++  Y+  G +  AR  FD M E+++++WN+++  Y Q     + L++Y+ M  
Sbjct: 437 IVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLS 496

Query: 184 ED-VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
           E+ V  D  T V L   CA +GA  +G  +     ++G +    V NA++ MY+KCG + 
Sbjct: 497 EEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRIL 556

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A  VF  +  +D++SWN+MI GY  HG G +AI  F  +L  G  PD I+++ +L GCS
Sbjct: 557 EARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCS 616

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--L 360
           H GLV+EG  YF MM   +N+ PG++H+ C+VDL GRAG L +A ++I+   P  P   +
Sbjct: 617 HSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLID-DMPMKPTAEV 675

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           W  LL +CKIH N E+ E+A K++ +L++  +G Y+L+A IYA     +  A+ RKL++ 
Sbjct: 676 WGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRD 735

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
            GIK  PG+SW+E+ N+VH F  DD SHP    I +KL+E+M +   +GY + +S     
Sbjct: 736 KGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDS----- 790

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
                    +S  +HSEKLA+AFGL T P    + I+KNLR            S    R+
Sbjct: 791 --------TRSEIHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGRE 842

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
            ++RD VR+HHF  G CSCGDYW
Sbjct: 843 FVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 155/288 (53%), Gaps = 5/288 (1%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           + +A  LF+ +      +WN ++ A +QS    +A+     M    + R D+ T+T +L 
Sbjct: 220 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV-RLDSTTYTSSLT 278

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC R+ +L   ++LH  VIR+       V++ L+  YA +G  + A+ VF+++ +R+ V+
Sbjct: 279 ACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVA 338

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W  +IS + Q     E+++L+ +MR E + LD F L  L+S C     L +G  LH +  
Sbjct: 339 WTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCL 398

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G +++V V N+L+ MYAKC NL SA  +F  M ++D++SW SMI  Y   G   +A  
Sbjct: 399 KSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKARE 458

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           FF  M       + IT+  +L      G  E+G+  + +M+S   ++P
Sbjct: 459 FFDGM----SEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRP 502



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 188/444 (42%), Gaps = 66/444 (14%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           +LN YA      LS A  LF ++      +WN+L+  + QS   L ++  +  M  +  S
Sbjct: 77  MLNGYA--KLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDS 134

Query: 86  RPDTFTFTFTLKACERVK----ALNKCQELHGFVIRSGYE----------RCVVVS---- 127
            P+ FT    +K+C  +     AL     +  F  +   E          RC  V     
Sbjct: 135 WPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASR 194

Query: 128 -------------TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
                         +++ GY     ++ A  +FD+MPERD+VSWN ++S  +Q+    EA
Sbjct: 195 LFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREA 254

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH-RIACEMGFVESVYVGNALVD 233
           L +   M+ + V LD  T    L++CA + +L  G  LH ++   +  ++  YV +ALV+
Sbjct: 255 LDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDP-YVASALVE 313

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           +YAK G    A  VF+ +  R+ ++W  +I G+  +G   E++  F QM       D   
Sbjct: 314 LYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFA 373

Query: 294 FLGLLCGCS-----------HQGLVEEG----VEYFHMMVSRY----NLKPG-------- 326
              L+ GC            H   ++ G    V   + ++S Y    NL+          
Sbjct: 374 LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN 433

Query: 327 ---IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
              I  +  ++  Y + G + KA E  +  S  + + W  +LG+   H   E G + M  
Sbjct: 434 EKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDG-LRMYK 492

Query: 384 LVQLEAASAGDYVLLATIYACTKD 407
           ++  E     D+V   T++    D
Sbjct: 493 VMLSEEYVRPDWVTYVTLFKGCAD 516



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 141/315 (44%), Gaps = 39/315 (12%)

Query: 125 VVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-R 182
           V++ N+M  GYA  G +  A  +F  MP RD+ SWN+++S Y Q+  +L +L+ +  M R
Sbjct: 71  VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 130

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
             D   + FTL C + SC  +G  ++ + L  +  +    +   V  ALVDM+ +CG +D
Sbjct: 131 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 190

Query: 243 SA------------FC-------------------VFSRMRKRDVLSWNSMIVGYGVHGR 271
            A            FC                   +F  M +RDV+SWN M+      GR
Sbjct: 191 LASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 250

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY- 330
             EA+     M   G   DS T+   L  C+    +  G +  H  V R NL P I  Y 
Sbjct: 251 VREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWG-KQLHAQVIR-NL-PHIDPYV 307

Query: 331 -GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
              LV+LY ++G  ++A  V N+    + V W T+L S  +        + + N ++ E 
Sbjct: 308 ASALVELYAKSGCFKEAKGVFNSLHDRNNVAW-TVLISGFLQYGCFTESVELFNQMRAEL 366

Query: 390 ASAGDYVLLATIYAC 404
            +   + L   I  C
Sbjct: 367 MTLDQFALATLISGC 381



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 8/256 (3%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           W     A S   +++ A+  F+ +       WN+++ A+ Q  +    +  Y  ML    
Sbjct: 440 WTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEY 499

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
            RPD  T+    K C  + A     ++ G  ++ G      V+  ++  Y+  G I  AR
Sbjct: 500 VRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEAR 559

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VFD +  +D+VSWN++I+ Y+Q     +A+++++ +       D  + V +LS C+H G
Sbjct: 560 KVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSG 619

Query: 205 ALNMGIFLHRIACEMGFVESVYVG----NALVDMYAKCGNLDSAFCVFSRMRKRDVLS-W 259
            +  G F   +   M    ++  G    + +VD+  + G+L  A  +   M  +     W
Sbjct: 620 LVQEGKFYFDM---MKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVW 676

Query: 260 NSMIVGYGVHGRGDEA 275
            +++    +HG  + A
Sbjct: 677 GALLSACKIHGNNELA 692



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 2/124 (1%)

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           +V   N +++ YAK G L  A  +F RM  RDV SWN+++ GY    +   ++  F  M 
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 284 MAGFH-PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
            +G   P++ T    +  C   G     ++    MV +++ +   +    LVD++ R G 
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQLL-AMVQKFDSQDDSEVAAALVDMFVRCGA 188

Query: 343 LEKA 346
           ++ A
Sbjct: 189 VDLA 192


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 206/568 (36%), Positives = 313/568 (55%), Gaps = 28/568 (4%)

Query: 7   ARYVGLNKARQAH------EIHGEWLLNSYAISV---SSSLSYAQLLFNQIQNPQTQAWN 57
           ARY  L+ AR  H      +  G   L++  I +     +++ A+ +F+ +      +W 
Sbjct: 75  ARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWT 134

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
           SLI  +AQ+  P +A+     ML     +P+ FTF   LKA     +    +++H   ++
Sbjct: 135 SLIAGYAQNDMPDEALGLLPGMLRGRF-KPNGFTFASLLKAAGASASSGIGEQIHALTVK 193

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177
             +   V V + L+  YA  G ++ A +VFD +  ++ VSWN++I+ + +       L +
Sbjct: 194 YDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLM 253

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
           +  M+        FT   + S+ A +GAL  G ++H    + G   S +VGN ++DMYAK
Sbjct: 254 FAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAK 313

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
            G++  A  VF R+ K+DV++WNSM+  +  +G G EA++ F++M   G H + ITFL +
Sbjct: 314 SGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSI 373

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           L  CSH GLV+EG +YF MM   YNL+P I HY  +VDL GRAG L  AL  I    P  
Sbjct: 374 LTACSHGGLVKEGKQYFDMM-KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFI-FKMPMK 431

Query: 358 PV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415
           P   +W  LLGSC++H+N +IG+ A  ++ +L+    G  VLL  IYA T   +  AR R
Sbjct: 432 PTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVR 491

Query: 416 KLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES 475
           K++K+ G+K  P  SW+EI N VH FV +D +HP ++ IY+K EEI  + +  GY  +  
Sbjct: 492 KMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTD 551

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
            V +     E   +    YHSEK+A+AF L   P G ++RI+KN+R            S 
Sbjct: 552 YVLLHVDEQER--QAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISK 609

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + R+++VRD  R+HHF  G CSCGDYW
Sbjct: 610 VFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 139/271 (51%), Gaps = 3/271 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           + AC R ++L+  + +H  +  S +   V +  +L+  Y   G +  AR VFD MP RD+
Sbjct: 71  ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDM 130

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
            SW S+I+ Y Q     EAL L   M       +GFT   LL +     +  +G  +H +
Sbjct: 131 CSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHAL 190

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             +  + + VYVG+AL+DMYA+CG +D A  VF ++  ++ +SWN++I G+   G G+  
Sbjct: 191 TVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETT 250

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV-EYFHMMVSRYNLKPGIKHYGCLV 334
           +  F +M   GF     T+  +    +  G +E+G   + HM+ S   L   + +   ++
Sbjct: 251 LLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGN--TIL 308

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           D+Y ++G +  A +V +     D V W ++L
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSML 339



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 5/173 (2%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           L+++CA   +L+    +H       F  SV++ N+L+ +Y KCG +  A  VF  M  RD
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL--CGCSHQGLVEEGVEY 313
           + SW S+I GY  +   DEA+     ML   F P+  TF  LL   G S    + E +  
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQI-- 187

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            H +  +Y+    +     L+D+Y R G+++ A+ V +     + V W  L+ 
Sbjct: 188 -HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIA 239


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 200/524 (38%), Positives = 298/524 (56%), Gaps = 23/524 (4%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F++     +  W+S+I AFAQ+ +PL A+ ++  ML   + RPD   +    KAC  ++
Sbjct: 82  VFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGV-RPDDHIYPSATKACGFLR 140

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
             +  + +H   +++GY   V V ++L+  YA  G I  AR +FD MPER++VSW+ +I 
Sbjct: 141 RSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIY 200

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y Q    +EAL L+++   EDV ++ FT   ++  C+    L +G  +H +  +M F  
Sbjct: 201 GYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDS 260

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           S +VG+AL+ +Y+KCG ++ A+ VF  +  R++  WNSM++    H         F++M 
Sbjct: 261 SSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMG 320

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  P+ I FL +L  CSH GLVE+G EYF +M   Y ++P  +HY  LVDL GRAGKL
Sbjct: 321 NVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLM-RDYGIEPETEHYASLVDLLGRAGKL 379

Query: 344 EKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           ++A+ VI    P  P   +W  LL  C+IH++ E+       +++++++S+G +VLL+  
Sbjct: 380 QEAVSVIK-QMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNA 438

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           YA     E  AR RK+++  G+K   G SW+E GN+VH F   D+SH     IY KLEE+
Sbjct: 439 YAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEEL 498

Query: 462 MHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
               +  GY  D S V  AV G    + +     YHSE+LAIAFGL T P G  +R++KN
Sbjct: 499 EEEMEKAGYVADTSFVLRAVDGEEKNETIR----YHSERLAIAFGLITFPPGRPIRVMKN 554

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    R LIVRD  R+H F DG CSCGDYW
Sbjct: 555 LRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 155/314 (49%), Gaps = 20/314 (6%)

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R ++L +  +LH  +++ G +   +VS NL+  Y+   +   +  VFD  P++   +W+S
Sbjct: 37  RSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSS 96

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS + Q    L AL+ + RM  + V  D         +C  +   ++G  +H +A + G
Sbjct: 97  VISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTG 156

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +   V+VG++LVDMYAKCG +  A  +F  M +R+V+SW+ MI GY     G EA++ FK
Sbjct: 157 YYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFK 216

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           Q L+     +  TF  ++  CS    +E G +  H +  + +          L+ LY + 
Sbjct: 217 QALIEDVDVNDFTFSSVIRVCSSSTFLELG-KLIHGLCLKMSFDSSSFVGSALISLYSKC 275

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNV--------EIGEIAMK-NLVQLEAAS 391
           G +E A +V +     +  LW ++L +C  H +         E+G + MK N +      
Sbjct: 276 GVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIX----- 330

Query: 392 AGDYVLLATIYACT 405
                 L+ +YAC+
Sbjct: 331 -----FLSVLYACS 339



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 4/211 (1%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL S     +L  G+ LH    + G      V + L+++Y+K      +  VF    K+ 
Sbjct: 31  LLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKS 90

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
             +W+S+I  +  +     A+ FF++ML  G  PD   +      C      + G +  H
Sbjct: 91  STTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVG-KSVH 149

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNV 374
            +  +      +     LVD+Y + G++  A  + +     + V W  ++ G  ++   V
Sbjct: 150 CLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGV 209

Query: 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           E   +  + L+  E     D+   + I  C+
Sbjct: 210 EALTLFKQALI--EDVDVNDFTFSSVIRVCS 238


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 195/530 (36%), Positives = 298/530 (56%), Gaps = 21/530 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF  + +     WN +I  + Q+ +  +A+  +  +    +   D  TF   L 
Sbjct: 258 LGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKAND-ITFVLMLN 316

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
               + +L K + +H  V  +GY+R VVV+T LM  Y        A  +F +M  +D+++
Sbjct: 317 VYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVIT 376

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W  +   Y Q  F  EAL+L++ M+ E       TLV +L +CAH+ AL  G  +H    
Sbjct: 377 WTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHII 436

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           E GF   + V  AL++MY KCG +  A  VF +M KRD+L WNSM+  Y  HG  DE + 
Sbjct: 437 ENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQ 496

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM + G   D+++F+ +L   SH G V +G +YF  M+  +++ P  + YGC+VDL 
Sbjct: 497 LFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLL 556

Query: 338 GRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GRAG++++A++++   S    D +LW TLLG+C+ H   +  + A + +++ + + +G Y
Sbjct: 557 GRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAY 616

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V+L+ +YA   D +GV R RKL++S G+K  PG S IEI N+VH+F+  D+SHP    IY
Sbjct: 617 VVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIY 676

Query: 456 RKLEEIMHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
            +L+ +    +  GY  D  ++   V     ED L     YHSE+LAIAFGL +TP GT 
Sbjct: 677 AELDVLNSEMRAAGYIPDTKMILHDVEDERKEDML----FYHSERLAIAFGLMSTPPGTP 732

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR++KNLR            S    R+++VRD  R+H+F+DG CSC DYW
Sbjct: 733 LRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 176/350 (50%), Gaps = 6/350 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+N Y  +   S+  A   F ++++    +W ++I A  Q      A + Y  M + 
Sbjct: 144 GTALINMY--NKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLD 201

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +  P+  T      A      L++ + ++  V     E  V V  + M  +   G++  
Sbjct: 202 GVV-PNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGD 260

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR +F++M +RD+V+WN +I+ Y Q     EA++L+ R++ + +  +  T V +L+    
Sbjct: 261 ARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTS 320

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + +L  G  +H +  E G+   V V  AL+ +Y +C     A+ +F  M  +DV++W  M
Sbjct: 321 LTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVM 380

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRY 321
            V Y  +G   EA+  F++M + G  P S T + +L  C+H   +++G + + H++ + +
Sbjct: 381 CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGF 440

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            ++  ++    L+++YG+ GK+ +A  V    +  D ++W ++LG+   H
Sbjct: 441 RMEMVVE--TALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQH 488



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 165/340 (48%), Gaps = 6/340 (1%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +PDT  F   L+ C   K ++  + +H  V   G+E+  +V  +L++ YA  G +  A+ 
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF+ +  +D+ +W  +I  Y Q   +  AL ++ +M+ EDV     T V +L++CA   +
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G+ +H    + GF   V+VG AL++MY KCG++  A+  F R+  RDV+SW +MI  
Sbjct: 122 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 181

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
              H +   A   +++M + G  P+ IT   +         + EG ++ + +VS   ++ 
Sbjct: 182 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEG-KFIYSLVSSRVMES 240

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE-IAMKNL 384
            ++     ++++G AG L  A  +       D V W  ++      +N   GE + +   
Sbjct: 241 DVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVI--TFYVQNENFGEAVRLFGR 298

Query: 385 VQLEAASAGD--YVLLATIYACTKDEEGVARTRKLIKSNG 422
           +Q +   A D  +VL+  +Y             +L+K  G
Sbjct: 299 LQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAG 338


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 204/561 (36%), Positives = 303/561 (54%), Gaps = 53/561 (9%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A L+ + +     +  ++LIRA A S  P  A+  Y H++ A L  P   T    LK+  
Sbjct: 41  AALVTSGLLRRSAELHDALIRAHASSGRPQAALPLYAHLIRAGLF-PTPHTLPSLLKSLA 99

Query: 101 RVKALNKCQEL----HGFVIRSGYERCVVVSTNLMR------------------------ 132
              A+   + L    H   +R G    ++V+  L+R                        
Sbjct: 100 LSPAVPGARRLALAVHAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDA 159

Query: 133 --------GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
                    +A  G +  ARS+FD MPER+ VSW+++++ Y QA    EAL ++ +M+ +
Sbjct: 160 STFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQ 219

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            V  D   LV +L++CA +GAL  G ++H          +V++G ALVDMYAKCG +   
Sbjct: 220 GVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLG 279

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             VF  M+ ++VL+W +MI G  +HGRG ++++ F QM  +G  PD I F+G LC C+H 
Sbjct: 280 MEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHT 339

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRT 363
           GLV++G E F+ MV+ Y +KP I+HYGC+VDL  R G L +A +++       D ++W  
Sbjct: 340 GLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGA 399

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           L+  C+ H+NVE+ E  +K+ ++LE   +G YVLL  IY+ +         R L++  G+
Sbjct: 400 LMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGV 459

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF-IGYTKDESLVAVSGS 482
           + TPG S +EI   +H+F+V D SHP    I  K  EI  R +   GY  D+  V +   
Sbjct: 460 EKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLL--D 517

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
             E+ +E + + HSEKLAIAF L +T D   +RIVKNLR            S  Y R++I
Sbjct: 518 IEEEEMESALSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREII 577

Query: 531 VRDRVRYHHFRDGLCSCGDYW 551
           VRDR R+H F+DG CSC DYW
Sbjct: 578 VRDRTRFHLFKDGTCSCKDYW 598


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 204/564 (36%), Positives = 318/564 (56%), Gaps = 57/564 (10%)

Query: 39  SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           SY  L+F Q+  P    W ++IR +A      ++  +Y  M    +  P +FTF+   KA
Sbjct: 93  SYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVG-PVSFTFSALFKA 151

Query: 99  CERVKALNKCQELH-------GFV-------------IRSGY------------ERCVVV 126
           C     ++  +++H       GF              ++ G+            ER VV 
Sbjct: 152 CGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVS 211

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L+  YA  G +E+A  +FD++P +D+V+W ++++ Y Q     EAL+ +++M  +DV
Sbjct: 212 WTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKM--QDV 269

Query: 187 GL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES--VYVGNALVDMYAKCGNLD 242
           G+  D  TL  ++S+CA +GA+    ++  IA   GF  S  V VG+AL+DMY+KCG+ D
Sbjct: 270 GMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPD 329

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A+ VF  M++R+V S++SMI+GY +HGR   A+  F  ML     P+ +TF+G+L  CS
Sbjct: 330 EAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACS 389

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--L 360
           H GLVE+G + F  M   + + P   HY C+VDL GRAG LE+AL+++ T  P +P   +
Sbjct: 390 HAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKT-MPMEPNGGV 448

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           W  LLG+C+IH N +I +IA   L +LE    G+Y+LL+ IYA     E V++ RK+I+ 
Sbjct: 449 WGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIRE 508

Query: 421 NGIKTTPGWSWIEIGN-QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
            G K  PG SW E  N ++H F   D +HP +  I + L++++ R +  GY  +  L + 
Sbjct: 509 KGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPN--LGSA 566

Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
               ++D  E+    HSEKLA+A+GL  T  G +++I+KN+R            S    R
Sbjct: 567 PYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGR 626

Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
           ++IVRD +R+HHF +G CSCG++W
Sbjct: 627 EIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 150/362 (41%), Gaps = 41/362 (11%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS--VFDNMPERDLVSWNSII 162
            ++ +++H  +IR+G  +C  V T L+R      V   +    VF  +   +   W ++I
Sbjct: 55  FSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMI 114

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG-F 221
             Y       E+   Y RMR + VG   FT   L  +C     +++G  +H     +G F
Sbjct: 115 RGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGF 174

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV----------------- 264
              +YVGN+++D+Y KCG L  A  VF  M +RDV+SW  +IV                 
Sbjct: 175 ASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDD 234

Query: 265 --------------GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
                         GY  +GR  EA+ +F++M   G   D +T  G++  C+  G V+  
Sbjct: 235 LPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKH- 293

Query: 311 VEYFHMMVSRYNLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
             +   +  R    P   +     L+D+Y + G  ++A +V       +   + +++   
Sbjct: 294 ANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGY 353

Query: 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKT 425
            +H           ++++ E         +  + AC+     E+G     K+ K  G+  
Sbjct: 354 AMHGRAHSALQLFHDMLKTE-IRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAP 412

Query: 426 TP 427
           +P
Sbjct: 413 SP 414



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 5/242 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A  LF+ + +    AW +++  +AQ+  P +A+ Y+  M    +   D  T    + 
Sbjct: 225 MESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMET-DEVTLAGVIS 283

Query: 98  ACERVKALNKCQELHGFVIRSGYERC--VVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           AC ++ A+     +     RSG+     VVV + L+  Y+  G  + A  VF+ M ER++
Sbjct: 284 ACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNV 343

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH-R 214
            S++S+I  Y        AL+L+  M   ++  +  T + +LS+C+H G +  G  L  +
Sbjct: 344 FSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAK 403

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGD 273
           +    G   S      +VD+  + G L+ A  +   M  + +   W +++    +HG  D
Sbjct: 404 MEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPD 463

Query: 274 EA 275
            A
Sbjct: 464 IA 465


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 197/531 (37%), Positives = 304/531 (57%), Gaps = 22/531 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
            +  A+ +F+ +      AWNS++  + ++    + +  +  +L   +   D  T    L
Sbjct: 171 QIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDV-TMISVL 229

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC R+  L   + +  +++  G  R   ++T+L+  YA  G ++ AR +FD M +RD+V
Sbjct: 230 MACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVV 289

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           +W+++IS Y QA    EAL L+  M+  +V  +  T+V +L SCA +GA   G ++H   
Sbjct: 290 AWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYI 349

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            +     +V +G  L+D YAKCG +D +  VF  M  ++V +W ++I G   +G G  A+
Sbjct: 350 KKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMAL 409

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
            FF  ML     P+ +TF+G+L  CSH  LV++G   F+ M   ++++P I+HYGC+VD+
Sbjct: 410 EFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDI 469

Query: 337 YGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GRAG LE+A + I N   P + V+WRTLL SC+ H+N+E+ E +++++ +LE A +GDY
Sbjct: 470 LGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDY 529

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           +LL+  YA     E   R R LIK   IK  PG S IE+   VH+F  +D  H  +  I+
Sbjct: 530 ILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIH 589

Query: 456 RKLEEIMHRAKFIGY---TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
             L+++M + K +GY   T D  L A      E+  E S ++HSEKLAIA+GL  T   T
Sbjct: 590 DALDKMMKQIKRLGYVPNTDDARLEA-----EEESKETSVSHHSEKLAIAYGLIRTSPRT 644

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++RI KNLR            S  + R +IVRDR R+HHF+DGLCSC DYW
Sbjct: 645 TIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 192/354 (54%), Gaps = 2/354 (0%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ 71
           L   R    I  E +L S A+ +  ++ YA  +FN I  P++ A+N +IR  A   SP  
Sbjct: 45  LKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDN 104

Query: 72  AIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131
           A+  +  M   S+   D FTF+  LKAC R+KAL + +++H  +++SG++    V   L+
Sbjct: 105 ALLLFKKMHEKSVQH-DKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLI 163

Query: 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191
           + YA  G I  AR VFD MPER +V+WNS++S YT+     E +KL+ ++    +  D  
Sbjct: 164 QMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDV 223

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           T++ +L +C  +  L +G  +       G   +  +  +L+DMYAKCG +D+A  +F  M
Sbjct: 224 TMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEM 283

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
            KRDV++W++MI GY    R  EA++ F +M     +P+ +T + +L  C+  G  E G 
Sbjct: 284 DKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETG- 342

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           ++ H  + +  +K  +     L+D Y + G +++++EV    S  +   W  L+
Sbjct: 343 KWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALI 396


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 190/524 (36%), Positives = 303/524 (57%), Gaps = 34/524 (6%)

Query: 49  QNPQTQ----AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
           +NP +      +N+LI  +  +     A F +  M    +S  D+ T    +  C   + 
Sbjct: 110 ENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSV-DSVTILGLVPLCTVPEY 168

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L   + LHG  ++ G    V V  + +  Y   G +E+ R +FD MP + L++WN++IS 
Sbjct: 169 LWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISG 228

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
           Y+Q     + L+L+E+M+   V  D FTLV +LSSCAH+GA  +G  +  +    GF  +
Sbjct: 229 YSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPN 288

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           V++ NAL+ MYA+CGNL  A  VF  M  + ++SW +MI  YG+HG G+  ++ F  M+ 
Sbjct: 289 VFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIK 348

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            G  PD   F+ +L  CSH GL ++G+E F  M   Y L+PG +HY CLVDL GRAG+L+
Sbjct: 349 RGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLD 408

Query: 345 KALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
           +A+E I+ S P +P   +W  LLG+CKIH+NV++ E+A   +++ E  + G YVL++ IY
Sbjct: 409 EAMEFID-SMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIY 467

Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
           + +K++EG+ R R +++    +  PG+S++E   +VH F+  D+SH   + ++R L+E+ 
Sbjct: 468 SDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDEL- 526

Query: 463 HRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY---HSEKLAIAFGLATTPDGTSLRIVKN 519
                     + S++ ++G+   D  E+ S+    HSE+LAIAFG+  +  GT + ++KN
Sbjct: 527 ----------ETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKN 576

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    R  +VRD  R+H+F+DG+CSC DYW
Sbjct: 577 LRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 179/380 (47%), Gaps = 8/380 (2%)

Query: 53  TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
           + +WN  +R  A      ++I  Y  ML +  S PD F+F F LK+C  +      Q+LH
Sbjct: 15  STSWNVRLRELAYQSLFTESISLYRSMLRSG-SSPDAFSFPFILKSCASLSLPVSGQQLH 73

Query: 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL--VSWNSIISCYTQASF 170
             VIR G E    V T L+  Y   G++E AR VF+  P      V +N++IS YT  S 
Sbjct: 74  CHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSK 133

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
             +A  ++ RM+   V +D  T++ L+  C     L +G  LH    + G    V V N+
Sbjct: 134 VSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNS 193

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
            + MY KCG+++S   +F  M  + +++WN++I GY  +G   + +  F+QM  +G  PD
Sbjct: 194 FITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPD 253

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
             T + +L  C+H G  + G E    +V      P +     L+ +Y R G L KA  V 
Sbjct: 254 PFTLVSVLSSCAHLGAKKIGQEVGE-LVEANGFAPNVFLSNALISMYARCGNLAKARAVF 312

Query: 351 NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD--- 407
           +       V W  ++G   +H   E G     ++++      G  V +  + AC+     
Sbjct: 313 DIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGA-VFVMVLSACSHSGLT 371

Query: 408 EEGVARTRKLIKSNGIKTTP 427
           ++G+   R + +   ++  P
Sbjct: 372 DKGLELFRAMKREYKLEPGP 391


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 183/442 (41%), Positives = 275/442 (62%), Gaps = 17/442 (3%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           VV  T ++   +A G ++ AR +FD MP+RD V+WN++++ Y +     EAL L++ M+ 
Sbjct: 190 VVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQK 249

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
             V +   TLV +L++CA +GAL  G+++H   C  G   SV +G ALVDMY+KCG +  
Sbjct: 250 AGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTM 309

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           +  VF  MR+R++ +W S + G  ++G G+E +  FK+M  AG  P+ +TF+ +L GCS 
Sbjct: 310 SMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSV 369

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
            GLVEEG   F  M  ++ ++P ++HYGC+VDLYGRAG+L+ A++ IN S P +P   +W
Sbjct: 370 AGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFIN-SMPVEPHEGVW 428

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
             LL + +IH NV++G+ AM  L ++E+ +   +VLL+ IYA + + +GV++ R ++KS 
Sbjct: 429 GALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSK 488

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
           G+K  PG S IE+  +VH+F V  KSHP    I   L E+ HR +  GY  +   V    
Sbjct: 489 GVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLFDI 548

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
              E   E + + HSEKLA+AFGL T P+ T +RIVKNLR            S  + R++
Sbjct: 549 EEEEK--EGAISLHSEKLALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREI 606

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           ++RDR R+HHF+ G CSC DYW
Sbjct: 607 VMRDRNRFHHFKHGACSCRDYW 628



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 2/222 (0%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A+S    +  A+ LF+ +      AWN+++  + +     +A+  ++ M  A ++  +  
Sbjct: 199 ALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEV- 257

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T    L AC ++ AL +   +H +V   G    V + T L+  Y+  GV+  +  VF+ M
Sbjct: 258 TLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETM 317

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
            ER++ +W S +S         E L+L++RM    +  +G T V +L  C+  G +  G 
Sbjct: 318 RERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGR 377

Query: 211 FLHRIACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRM 251
                  +   VE  +     +VD+Y + G LD A    + M
Sbjct: 378 ACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSM 419


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 198/569 (34%), Positives = 324/569 (56%), Gaps = 26/569 (4%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYA-ISVSSSLSYAQLLFNQIQNPQTQAWNSL 59
           +G + H+R + L  A       G  L++ YA  +   S+  ++ +F Q+      +W ++
Sbjct: 74  LGKQLHSRVIRLGLALDV--CVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 131

Query: 60  IRAFAQSLS-PLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           I A+AQS     +AI  +  M+   + RP+ F+F+  LKAC  +      ++++ + ++ 
Sbjct: 132 ITAYAQSGECDKEAIELFCKMISGHI-RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 190

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G      V  +L+  YA +G +E AR  FD + E++LVS+N+I+  Y +     EA  L+
Sbjct: 191 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 250

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             +    +G+  FT   LLS  A +GA+  G  +H    + G+  +  + NAL+ MY++C
Sbjct: 251 NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRC 310

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           GN+++AF VF+ M  R+V+SW SMI G+  HG    A+  F +ML  G  P+ IT++ +L
Sbjct: 311 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 370

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--S 356
             CSH G++ EG ++F+ M   + + P ++HY C+VDL GR+G L +A+E IN S P  +
Sbjct: 371 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN-SMPLMA 429

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
           D ++WRTLLG+C++H N E+G  A + +++ E      Y+LL+ ++A     + V + RK
Sbjct: 430 DALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRK 489

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
            +K   +    G SWIE+ N+VH+F V + SHP A  IY++L+++  + K +GY  D   
Sbjct: 490 SMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDF 549

Query: 477 VA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
           V   +     E FL +    HSEK+A+AFGL +T     +RI KNLR            S
Sbjct: 550 VLHDIEEEQKEQFLFQ----HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYIS 605

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +A  R+++VRD  R+HH ++G+CSC DYW
Sbjct: 606 MATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 168/330 (50%), Gaps = 14/330 (4%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+++       W  +I  FAQ      AI  +  M ++    PD FT++  L AC  + 
Sbjct: 12  VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV-PDRFTYSSVLSACTELG 70

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGY---AANGVIEAARSVFDNMPERDLVSWNS 160
            L   ++LH  VIR G    V V  +L+  Y   AA+G ++ +R VF+ MPE +++SW +
Sbjct: 71  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 130

Query: 161 IISCYTQA-SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           II+ Y Q+     EA++L+ +M    +  + F+   +L +C ++     G  ++  A ++
Sbjct: 131 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 190

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G      VGN+L+ MYA+ G ++ A   F  + +++++S+N+++ GY  + + +EA   F
Sbjct: 191 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 250

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC----LVD 335
            ++   G    + TF  LL G +  G + +G E  H  +    LK G K   C    L+ 
Sbjct: 251 NEIADTGIGISAFTFASLLSGAASIGAMGKG-EQIHGRL----LKGGYKSNQCICNALIS 305

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y R G +E A +V N     + + W +++
Sbjct: 306 MYSRCGNIEAAFQVFNEMEDRNVISWTSMI 335



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 109/212 (51%), Gaps = 13/212 (6%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VFD MPER+LV+W  +I+ + Q     +A+ L+  M       D FT   +LS+C  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC---GNLDSAFCVFSRMRKRDVLSW 259
           +G L +G  LH     +G    V VG +LVDMYAKC   G++D +  VF +M + +V+SW
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 260 NSMIVGYGVHGRGD-EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
            ++I  Y   G  D EAI  F +M+     P+  +F  +L  C +      G +     V
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ-----V 183

Query: 319 SRYNLKPGIKHYGC----LVDLYGRAGKLEKA 346
             Y +K GI    C    L+ +Y R+G++E A
Sbjct: 184 YSYAVKLGIASVNCVGNSLISMYARSGRMEDA 215


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 212/546 (38%), Positives = 318/546 (58%), Gaps = 26/546 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S   S+  A+ +F++ +N     +N+L RA + +    + +  Y  M   S+ 
Sbjct: 111 LINMY--SFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRM--NSIG 166

Query: 86  RP-DTFTFTFTLKACER----VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
            P D FT+T+ LKAC      V  LNK +E+H  ++R GY+  V + T L+  YA  G +
Sbjct: 167 IPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCV 226

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE--DVGLDGFTLVCLLS 198
             A  VF+ MP +++VSW+++I+CY +     EAL+L+  +  E  D+  +  T+V +L 
Sbjct: 227 SNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQ 286

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +CA + AL  G  +H      G    + V +ALV MYA+CG L+    VF +M KRDV+S
Sbjct: 287 ACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVS 346

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WNS+I  YGVHG G +AI  F++M   G  P  I+F+ +L  CSH GLV+EG   F+ M 
Sbjct: 347 WNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMH 406

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIG 377
             + + P ++HY C+VDL GRA +LE+A ++I N      P +W +LLGSC+IH NVE+ 
Sbjct: 407 VAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELA 466

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
           E A   L  LE  +AG+YVLLA IYA     +GV R +KL+++ G++  PG SWIE+  +
Sbjct: 467 ERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRK 526

Query: 438 VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSE 497
           ++ FV  D+ +P  + ++  L ++    K  GY     +V     ++E   E+    HSE
Sbjct: 527 IYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEK--ERIVLGHSE 584

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLA+AFGL  +  G  +RI K+LR            S   +++++VRD  R+HHFRDG+C
Sbjct: 585 KLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVC 644

Query: 546 SCGDYW 551
           SCGDYW
Sbjct: 645 SCGDYW 650



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 160/330 (48%), Gaps = 14/330 (4%)

Query: 50  NP--QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNK 107
           NP   T   N LI++  +  +  QA+      L++    P   T+   + +C    +L  
Sbjct: 34  NPTASTADNNKLIQSLCKQGNLTQAL-----ELLSLEPNPAQHTYELLILSCTHQNSLLD 88

Query: 108 CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ 167
            Q +H  ++ +G+++   ++T L+  Y+    I+ AR VFD    R +  +N++    + 
Sbjct: 89  AQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSL 148

Query: 168 ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA----HVGALNMGIFLHRIACEMGFVE 223
           A    E L +Y RM    +  D FT   +L +C      V  LN G  +H      G+  
Sbjct: 149 AGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDG 208

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            V++   LVDMYAK G + +A CVF++M  ++V+SW++MI  Y  +G+  EA+  F++++
Sbjct: 209 YVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELM 268

Query: 284 M--AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           +      P+S+T + +L  C+    +E+G    H  + R  L   +     LV +Y R G
Sbjct: 269 LETQDLCPNSVTMVSVLQACAALAALEQG-RLIHGYILRKGLDSILPVISALVTMYARCG 327

Query: 342 KLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           KLE    V +     D V W +L+ S  +H
Sbjct: 328 KLELGQRVFDQMDKRDVVSWNSLISSYGVH 357


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 193/522 (36%), Positives = 304/522 (58%), Gaps = 18/522 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQ +F++I      +WN+LI  +A++ +  +A+  +  M+  ++ +PD  T    L AC 
Sbjct: 188 AQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNV-KPDESTMVTVLSACA 246

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +  ++   +++H ++   G+   + +   L+  Y   G +E A  +F+ +  +D++SWN+
Sbjct: 247 QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNT 306

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE-- 218
           +I  YT  + + EAL L++ M       +  T++ +L +CAH+GA+++G ++H    +  
Sbjct: 307 LIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRL 366

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
            G      +  +L+DMYAKCG++++A  VF  M  R + SWN+MI G+ +HGR + A   
Sbjct: 367 KGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDI 426

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M   G  PD ITF+GLL  CSH G+++ G   F  M   Y + P ++HYGC++DL G
Sbjct: 427 FSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLG 486

Query: 339 RAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
            +G  ++A E+IN+     D V+W +LL +CK+H NVE+GE   +NL+++E  ++G YVL
Sbjct: 487 HSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVL 546

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ IYA       VA+ R L+   G+K  PG S IEI + VH+F++ DK HP    IY  
Sbjct: 547 LSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGM 606

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           LEE+    +  G+  D S   V     E++ E +  +HSEKLAIAFGL +T  GT L IV
Sbjct: 607 LEEMEVLLEEAGFVPDTS--EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           KNLR            S  Y R++I RDR R+HHF DG+CSC
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 201/369 (54%), Gaps = 39/369 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+YA  +F+ IQ P    WN++ R  A S  P+ A++ Y  M+   L  P+++TF F LK
Sbjct: 53  LTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLV-PNSYTFPFLLK 111

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           AC + KA  + Q++HG V++ G +                               R VV 
Sbjct: 112 ACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVS 171

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L++GYA+NG I +A+ +FD +P +D+VSWN++IS Y +   + EAL+L++ M   +V
Sbjct: 172 YTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNV 231

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T+V +LS+CA   ++ +G  +H    + GF  ++ + NAL+D+Y KCG +++A  
Sbjct: 232 KPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASG 291

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F  +  +DV+SWN++I GY       EA+  F++ML +G  P+ +T L +L  C+H G 
Sbjct: 292 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGA 351

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYG----CLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           ++ G  + H+ + +  LK G+ +       L+D+Y + G +E A +V ++        W 
Sbjct: 352 IDIG-RWIHVYIDK-RLK-GVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWN 408

Query: 363 TLLGSCKIH 371
            ++    +H
Sbjct: 409 AMIFGFAMH 417


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 189/527 (35%), Positives = 294/527 (55%), Gaps = 16/527 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  AQ + + I+     +W S+I  + Q     +A+  +  M    +  PD       + 
Sbjct: 396 LDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGI-WPDNIGLASAIS 454

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  +KA+++  ++H  V  SGY   V +   L+  YA  G+ + A S F+ +  ++ ++
Sbjct: 455 ACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGIT 514

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN +IS + Q+  + EALK++ +M       + FT V  +S+ A++  +  G  +H    
Sbjct: 515 WNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVI 574

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G+     + NAL+ +Y KCG+++ A   F  M KR+ +SWN++I     HGRG EA+ 
Sbjct: 575 KTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALD 634

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM   G  P  +TF+G+L  CSH GLVEEG+ YF  M + + + P   HY C+VD+ 
Sbjct: 635 LFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDIL 694

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAG+L++A   +     P+D ++WRTLL +CK+H+N+EIGE A K+L++LE   +  YV
Sbjct: 695 GRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYV 754

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+  YA T       + RK++K  G++  PG SWIE+ N VH F V D+ HP AD IY 
Sbjct: 755 LLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYN 814

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            L  +  R   IGY ++     +     ++  + ++  HSEKLA+AFGL + P    LR+
Sbjct: 815 FLSHLNDRLYKIGYKQEN--YHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRV 872

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +KNLR            S    R++++RD  R+HHF +G CSCGDYW
Sbjct: 873 IKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 220/474 (46%), Gaps = 19/474 (4%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  +  A  +F+         WN ++ A+ Q +  L   F   + ++A+  RP+ FT+  
Sbjct: 292 SGDIEEALQIFDSGDRTNVVLWNLMLVAYGQ-IDDLAKSFDIFYRMLAAGVRPNKFTYPC 350

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L+ C     +   +++H   I++G++  + VS  L+  Y+  G ++ A+ + D + E+D
Sbjct: 351 MLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKD 410

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +VSW S+I+ Y Q  F  EAL+ ++ M+   +  D   L   +S+CA + A++ G  +H 
Sbjct: 411 VVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHA 470

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                G+   V + N LV +YA+CG    AF  F  +  ++ ++WN +I G+   G  +E
Sbjct: 471 RVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEE 530

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F +M  AG   +  TF+  +   ++   +++G +  H  V +       +    L+
Sbjct: 531 ALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQ-IHARVIKTGYTSETEISNALI 589

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEIAMKNLVQLEAASAG 393
            LYG+ G +E A       +  + V W T++  C  H R +E   + + + ++ +     
Sbjct: 590 SLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLE--ALDLFDQMKQQGLKPS 647

Query: 394 DYVLLATIYACTK---DEEGVARTRKLIKSNGIKTTPGWSWIEIG--------NQVHKFV 442
           D   +  + AC+     EEG+   + +   +GI   P      +         ++  +F 
Sbjct: 648 DVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRF- 706

Query: 443 VDDKSHPDADMIYRKLEEI--MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY 494
           V++   P   M++R L     +H+   IG    + L+ +    S  ++  S+AY
Sbjct: 707 VEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAY 760



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 170/356 (47%), Gaps = 5/356 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S   A  +F  +    +  +N+LI   AQ     +A+  ++ M ++ LS PD+ T    L
Sbjct: 193 SFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLS-PDSVTIASLL 251

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  V  L K ++LH +++++G     ++  +L+  Y  +G IE A  +FD+    ++V
Sbjct: 252 AACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVV 311

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            WN ++  Y Q     ++  ++ RM    V  + FT  C+L +C H G + +G  +H + 
Sbjct: 312 LWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLT 371

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF   +YV   L+DMY+K G LD A  +   + ++DV+SW SMI GY  H    EA+
Sbjct: 372 IKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEAL 431

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             FK+M   G  PD+I     +  C+    V +G +  H  V        +  +  LV L
Sbjct: 432 ETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQ-IHARVYVSGYSADVSIWNGLVYL 490

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           Y R G  ++A          + + W  L+          + E A+K  ++++ A A
Sbjct: 491 YARCGISKEAFSSFEAIEHKEGITWNGLISG---FAQSGLYEEALKVFMKMDQAGA 543



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 151/306 (49%), Gaps = 16/306 (5%)

Query: 65  QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE-RVKALNKCQELHGFVIRSGYERC 123
           + L PL A     +M++ ++       F   L+AC    +      E+H   I  G    
Sbjct: 23  EKLLPLFAAKCRQYMVLGAVD------FACALRACRGSGRRWPLVPEIHAKAIICGLSGY 76

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
            ++   L+  YA  G +  AR VF+ +  RD VSW +++S Y Q     EA++LY  M  
Sbjct: 77  RIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHR 136

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
             V    + L  +LS+C       +G  +H    + GF    +VGNAL+ +Y +C +   
Sbjct: 137 SGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRL 196

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  VF  M   D +++N++I G+   G GD A+  F +M ++G  PDS+T   LL  CS 
Sbjct: 197 ADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSA 256

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIK----HYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
            G + +G +     +  Y LK G+       G L+DLY ++G +E+AL++ ++   ++ V
Sbjct: 257 VGDLRKGKQ-----LHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVV 311

Query: 360 LWRTLL 365
           LW  +L
Sbjct: 312 LWNLML 317



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 180/390 (46%), Gaps = 9/390 (2%)

Query: 18  AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYN 77
            + I G  L++ YA      +  A+ +F ++      +W +++  +AQ+    +A+  Y 
Sbjct: 75  GYRIIGNLLIDLYA--KKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYR 132

Query: 78  HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
            M  + +  P  +  +  L AC + +     + +H  V + G+     V   L+  Y   
Sbjct: 133 EMHRSGVV-PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRC 191

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
                A  VF +M   D V++N++IS + Q      AL +++ M+   +  D  T+  LL
Sbjct: 192 RSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLL 251

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           ++C+ VG L  G  LH    + G      +  +L+D+Y K G+++ A  +F    + +V+
Sbjct: 252 AACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVV 311

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
            WN M+V YG      ++   F +ML AG  P+  T+  +L  C+H G +  G E  H +
Sbjct: 312 LWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLG-EQIHSL 370

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIG 377
             +   +  +   G L+D+Y + G L+KA  +++     D V W +++     H   E  
Sbjct: 371 TIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQH---EFC 427

Query: 378 EIAMKNLVQLEAAS--AGDYVLLATIYACT 405
           + A++   +++A      +  L + I AC 
Sbjct: 428 KEALETFKEMQACGIWPDNIGLASAISACA 457


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 196/556 (35%), Positives = 315/556 (56%), Gaps = 36/556 (6%)

Query: 29   SYAISVSSSLSYAQL-----LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS 83
            S+ I +SS L    +     LF Q+      +WN++I    ++     A+     M+ A 
Sbjct: 456  SWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAG 515

Query: 84   LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
             +  +  TF+  L     +  L   +++H  V++ G      V  +L+  Y   G +E A
Sbjct: 516  PAF-NKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKA 574

Query: 144  RSVFDNMPER---------------DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188
              +F ++P+                + VSW+S++S Y Q     +ALK +  M    V +
Sbjct: 575  SVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEV 634

Query: 189  DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
            D FTL  ++S+CA  G L +G  +H    ++G    V++G++++DMY KCG+L+ A+ +F
Sbjct: 635  DKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIF 694

Query: 249  SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
            ++ + R+V+ W SMI G  +HG+G EA+  F+ M+  G  P+ ++F+G+L  CSH GL+E
Sbjct: 695  NQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLE 754

Query: 309  EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD-PVLWRTLLGS 367
            EG +YF +M   Y ++PG +H+ C+VDLYGRAG+L +  E I+ ++ S    +WR+ L S
Sbjct: 755  EGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSS 814

Query: 368  CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTP 427
            C++H+N+E+G    K L++LE   AG Y+L ++I A     E  A+ R L++  G+K  P
Sbjct: 815  CRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNP 874

Query: 428  GWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDF 487
              SWI++ NQVH FV+ D+SHP    IY  L+E++ R K IGY+ D  +  V     ++ 
Sbjct: 875  SQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTD--VTPVMQDVEQEQ 932

Query: 488  LEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRS-------IAYS-----RDLIVRDRV 535
             +    YHSEKLAIA+G+ +T  GT +R++KNLR        I Y+     R++I+RD  
Sbjct: 933  RQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIH 992

Query: 536  RYHHFRDGLCSCGDYW 551
            R+HHF+ G CSC DYW
Sbjct: 993  RFHHFKHGHCSCADYW 1008



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/462 (23%), Positives = 203/462 (43%), Gaps = 65/462 (14%)

Query: 21  IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           I G  LLN YA   S +L  A  +F +I      +W  LI  FA+       +  +  M 
Sbjct: 322 IRGNHLLNLYA--KSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQ 379

Query: 81  MASLSRPDTFTFTFTLKAC-ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
              +  P+ FT +  LK+C   V      + +HG+++R+G +   V++ +++  Y     
Sbjct: 380 DQGVC-PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRC 438

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG-----LDG---- 190
              A  +F  M E+D VSWN ++S Y Q     +++ L+ ++  +D       +DG    
Sbjct: 439 FGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRN 498

Query: 191 ------------------------FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
                                   F++  +L+S   V  L +G  +H    ++G ++  +
Sbjct: 499 GCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSV--LGLGKQIHTQVLKVGVLDDGF 556

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKR---------------DVLSWNSMIVGYGVHGR 271
           V N+L+DMY KCG ++ A  +F  + +                + +SW+SM+ GY  +GR
Sbjct: 557 VRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGR 616

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
            ++A+  F  M+ +    D  T   ++  C+  G++E G +  H  + +      +    
Sbjct: 617 FEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQ-VHGYIQKIGHGLDVFLGS 675

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEA 389
            ++D+Y + G L  A  + N +   + VLW +++  C +H     G  A++   L+  E 
Sbjct: 676 SIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQ---GREAVRLFELMINEG 732

Query: 390 ASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTTPG 428
            +  +   +  + AC+     EEG    R + +  GI+  PG
Sbjct: 733 ITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIR--PG 772



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 104/211 (49%), Gaps = 9/211 (4%)

Query: 111 LHGFVIRSGYERCVVVSTN-LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           LH  +I++G   CV +  N L+  YA +  +E A  +F+ +P+ D+ SW  +IS + +  
Sbjct: 310 LHAKLIKNG---CVGIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIG 366

Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSC-AHVGALNMGIFLHRIACEMGFVESVYVG 228
              + L L+ +M+ + V  + FTL  +L SC ++V    +G  +H      G      + 
Sbjct: 367 LSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLN 426

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N+++D Y KC     A  +F  M ++D +SWN M+  Y   G   +++  F+Q+      
Sbjct: 427 NSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLP----G 482

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
            D+ ++  ++ G    G     +E  + MV+
Sbjct: 483 KDAASWNTMIDGLMRNGCERVALELLYKMVA 513


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 198/541 (36%), Positives = 304/541 (56%), Gaps = 21/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA     +L  A+  F Q+      +WNS+I A+ Q+  P+ A  ++  M +    
Sbjct: 357 LINMYA--KFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGF- 413

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAAR 144
           +PD  T         + +     + +HGF++R G+    VV+   ++  YA  G++++A 
Sbjct: 414 QPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAH 473

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHV 203
            VF+ +  +D++SWN++I+ Y Q     EA+++Y+ M   +++  +  T V +L + AHV
Sbjct: 474 KVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHV 533

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           GAL  G+ +H    +      V+V   L+D+Y KCG L  A  +F ++ +   ++WN++I
Sbjct: 534 GALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAII 593

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
             +G+HG  ++ +  F +ML  G  PD +TF+ LL  CSH G VEEG   F +M   Y +
Sbjct: 594 SCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGI 652

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           KP +KHYGC+VDL GRAG LE A   I +     D  +W  LLG+C+IH N+E+G+ A  
Sbjct: 653 KPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASD 712

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            L ++++ + G YVLL+ IYA     EGV + R L +  G+K TPGWS IE+  +V  F 
Sbjct: 713 RLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFY 772

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             ++SHP    IY +L  +  + K +GY  D S V       ED  E     HSE+LAIA
Sbjct: 773 TGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVL--QDVEEDEKEHILTSHSERLAIA 830

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FG+ +TP  + +RI KNLR            S    R+++VRD  R+HHF+DG+CSCGDY
Sbjct: 831 FGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDY 890

Query: 551 W 551
           W
Sbjct: 891 W 891



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 173/340 (50%), Gaps = 5/340 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA     SLS  +  F+QI       WNS+I A+  +    +AI  +  +L+ S  
Sbjct: 157 LVNLYANLGDVSLS--RCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEI 214

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           RPD +TF   LKAC     L   + +H +  + G++  V V+ +L+  Y+  G    ARS
Sbjct: 215 RPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARS 271

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD+MP RD+ SWN++IS   Q     +AL + + MR E + ++  T+V +L  C  +G 
Sbjct: 272 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGD 331

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           ++  + +H    + G    ++V NAL++MYAK GNL+ A   F +M   DV+SWNS+I  
Sbjct: 332 ISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAA 391

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y  +     A  FF +M + GF PD +T + L    +     +        ++ R  L  
Sbjct: 392 YEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLME 451

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +     +VD+Y + G L+ A +V       D + W TL+
Sbjct: 452 DVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLI 491



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 138/277 (49%), Gaps = 8/277 (2%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           F F   +  +     KC  LH  ++ +G  + + +ST L+  YA  G +  +R  FD +P
Sbjct: 122 FNFLFDSSTKT-PFAKC--LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIP 178

Query: 152 ERDLVSWNSIISCYTQASFHLEALK-LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           ++D+ +WNS+IS Y       EA+   Y+ +   ++  D +T   +L +C   G L  G 
Sbjct: 179 QKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGR 235

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H  A ++GF  +V+V  +L+ MY++ G    A  +F  M  RD+ SWN+MI G   +G
Sbjct: 236 RIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG 295

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
              +A+    +M + G   + +T + +L  C   G +   +   H+ V ++ L+  +   
Sbjct: 296 NAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM-LIHLYVIKHGLEFDLFVS 354

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
             L+++Y + G LE A +       +D V W +++ +
Sbjct: 355 NALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAA 391


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 192/533 (36%), Positives = 296/533 (55%), Gaps = 18/533 (3%)

Query: 33   SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
            S S  +  A+ LF         +WN+++  +  S    +A+  Y  ++  S  R +  T 
Sbjct: 1054 SKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLY-ILMQESGERANQITL 1112

Query: 93   TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
                KA   +  L + +++   V++ G+   + V + ++  Y   G +E+AR +F+ +P 
Sbjct: 1113 ANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPS 1172

Query: 153  RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
             D V+W ++IS   +      AL  Y  MR   V  D +T   L+ +C+ + AL  G  +
Sbjct: 1173 PDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQI 1232

Query: 213  HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
            H    ++      +V  +LVDMYAKCGN++ A  +F R     + SWN+MIVG   HG  
Sbjct: 1233 HANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNA 1292

Query: 273  DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            +EA+ FF++M   G  PD +TF+G+L  CSH GLV E  E F+ M   Y ++P I+HY C
Sbjct: 1293 EEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSC 1352

Query: 333  LVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
            LVD   RAG++ +A +VI +S P  +   ++RTLL +C++  + E G+   + L+ LE +
Sbjct: 1353 LVDALSRAGRIREAEKVI-SSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPS 1411

Query: 391  SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
             +  YVLL+ +YA     E VA  R +++   +K  PG+SW+++ N+VH FV  D+SH +
Sbjct: 1412 DSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEE 1471

Query: 451  ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
             D+IY K+E IM R +  GY  D     V     E+  E S  YHSEKLAIA+GL  TP 
Sbjct: 1472 TDVIYNKVEYIMKRIREEGYLPDTDFALV--DVEEEDKECSLYYHSEKLAIAYGLMKTPP 1529

Query: 511  GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             T+LR++KNLR            S  + R++++RD  R+HHFR G+CSCGDYW
Sbjct: 1530 STTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 166/353 (47%), Gaps = 6/353 (1%)

Query: 55   AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
            AWN  +  F Q     +A+  +  M+ + ++  D  TF   L     +  L   +++HG 
Sbjct: 873  AWNKTLSWFLQRGETWEAVDCFVDMINSRVA-CDGLTFVVMLSVVAGLNCLELGKQIHGI 931

Query: 115  VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
            V+RSG ++ V V   L+  Y   G +  AR+VF  M E DLVSWN++IS    +     +
Sbjct: 932  VVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECS 991

Query: 175  LKLYERMRFEDVGLDGFTLVCLLSSCAHV-GALNMGIFLHRIACEMGFVESVYVGNALVD 233
            + ++  +    +  D FT+  +L +C+ + G  ++   +H  A + G V   +V   L+D
Sbjct: 992  VGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLID 1051

Query: 234  MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
            +Y+K G ++ A  +F      D+ SWN+M+ GY V G   +A+  +  M  +G   + IT
Sbjct: 1052 VYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQIT 1111

Query: 294  FLGLLCGCSHQGLVEEGVEYFHMMVSR-YNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
                         +++G +   ++V R +NL   +     ++D+Y + G++E A  + N 
Sbjct: 1112 LANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFV--ISGVLDMYLKCGEMESARRIFNE 1169

Query: 353  SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
                D V W T++  C +    E   +   + ++L      +Y     + AC+
Sbjct: 1170 IPSPDDVAWTTMISGC-VENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACS 1221



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 165/354 (46%), Gaps = 5/354 (1%)

Query: 23   GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
            G  L+N Y    + S+S A+ +F Q+      +WN++I   A S     ++  +  +L  
Sbjct: 944  GNCLINMYV--KTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRG 1001

Query: 83   SLSRPDTFTFTFTLKACERVKA-LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
             L  PD FT    L+AC  +    +   ++H   +++G      VST L+  Y+ +G +E
Sbjct: 1002 GL-LPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKME 1060

Query: 142  AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
             A  +F N    DL SWN+++  Y  +    +AL+LY  M+      +  TL     +  
Sbjct: 1061 EAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAG 1120

Query: 202  HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
             +  L  G  +  +  + GF   ++V + ++DMY KCG ++SA  +F+ +   D ++W +
Sbjct: 1121 GLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTT 1180

Query: 262  MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
            MI G   +G+ + A+  +  M ++   PD  TF  L+  CS    +E+G +  H    + 
Sbjct: 1181 MISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQ-IHANTVKL 1239

Query: 322  NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
            N          LVD+Y + G +E A  +   ++ S    W  ++     H N E
Sbjct: 1240 NCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAE 1293



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 127/294 (43%), Gaps = 31/294 (10%)

Query: 154  DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
            D+++WN  +S + Q     EA+  +  M    V  DG T V +LS  A +  L +G  +H
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 214  RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
             I    G  + V VGN L++MY K G++  A  VF +M + D++SWN+MI G  + G  +
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEE 989

Query: 274  EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG-- 331
             ++  F  +L  G  PD  T   +L  CS  G    G  +    +    +K G+      
Sbjct: 990  CSVGMFVDLLRGGLLPDQFTVASVLRACSSLG----GGCHLATQIHACAMKAGVVLDSFV 1045

Query: 332  --CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
               L+D+Y ++GK+E+A  +       D   W  ++    +                   
Sbjct: 1046 STTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIV------------------- 1086

Query: 390  ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
              +GD+     +Y     +E   R  ++  +N  K   G   ++ G Q+   VV
Sbjct: 1087 --SGDFPKALRLYILM--QESGERANQITLANAAKAAGGLVGLKQGKQIQAVVV 1136



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 4/188 (2%)

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYTQAS 169
           H  ++ SG+     ++ NL+  Y+  G + +AR +FD  P+  RDLV+WN+I+S +   +
Sbjct: 649 HARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKA 708

Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
              +   L+  +R   V     TL  +   C    + +    LH  A ++G    V+V  
Sbjct: 709 --RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAG 766

Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
           ALV++YAK G +  A  +F  M  RDV+ WN M+  Y   G   EA+  F +    G  P
Sbjct: 767 ALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRP 826

Query: 290 DSITFLGL 297
           D +T   L
Sbjct: 827 DDVTLCTL 834



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 150/377 (39%), Gaps = 43/377 (11%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSS---SLSYAQLLFNQIQNPQTQ--- 54
           +G + HAR +        H  H +  L +  I++ S   SLS A+ LF+    P T    
Sbjct: 644 LGKRAHARIL-----TSGH--HPDRFLTNNLITMYSKCGSLSSARKLFDT--TPDTSRDL 694

Query: 55  -AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
             WN+++ A A      +  F+   +L  S       T     K C    + +  + LHG
Sbjct: 695 VTWNAILSAHADKA---RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHG 751

Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
           + ++ G +  V V+  L+  YA  G I  AR +FD M  RD+V WN ++  Y       E
Sbjct: 752 YAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYE 811

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           AL L+       +  D  TL  L    A V      +       E    +    G  L  
Sbjct: 812 ALLLFSEFNRTGLRPDDVTLCTL----ARVVKSKQNVL------EWQLKQLKAYGTKL-- 859

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
                      F         DV++WN  +  +   G   EA+  F  M+ +    D +T
Sbjct: 860 -----------FMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLT 908

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F+ +L   +    +E G +  H +V R  L   +    CL+++Y + G + +A  V    
Sbjct: 909 FVVMLSVVAGLNCLELGKQ-IHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQM 967

Query: 354 SPSDPVLWRTLLGSCKI 370
           +  D V W T++  C +
Sbjct: 968 NEVDLVSWNTMISGCAL 984



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 13/166 (7%)

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM--RKRDVLSWNSMI 263
           L +G   H      G     ++ N L+ MY+KCG+L SA  +F       RD+++WN+++
Sbjct: 642 LPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAIL 701

Query: 264 VGYGVHGRGDEAISFFKQM----LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
             +    R  +    F+ +    + A  H  +  F   L   S         E  H    
Sbjct: 702 SAHADKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMCLLSAS-----PSAAESLHGYAV 754

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +  L+  +   G LV++Y + G++ +A  + +     D VLW  ++
Sbjct: 755 KIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMM 800


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 198/569 (34%), Positives = 324/569 (56%), Gaps = 26/569 (4%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYA-ISVSSSLSYAQLLFNQIQNPQTQAWNSL 59
           +G + H+R + L  A       G  L++ YA  +   S+  ++ +F Q+      +W ++
Sbjct: 69  LGKQLHSRVIRLGLALDV--CVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 126

Query: 60  IRAFAQSLS-PLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           I A+AQS     +AI  +  M+   + RP+ F+F+  LKAC  +      ++++ + ++ 
Sbjct: 127 ITAYAQSGECDKEAIELFCKMISGHI-RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 185

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G      V  +L+  YA +G +E AR  FD + E++LVS+N+I+  Y +     EA  L+
Sbjct: 186 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 245

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             +    +G+  FT   LLS  A +GA+  G  +H    + G+  +  + NAL+ MY++C
Sbjct: 246 NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRC 305

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           GN+++AF VF+ M  R+V+SW SMI G+  HG    A+  F +ML  G  P+ IT++ +L
Sbjct: 306 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 365

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--S 356
             CSH G++ EG ++F+ M   + + P ++HY C+VDL GR+G L +A+E IN S P  +
Sbjct: 366 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN-SMPLMA 424

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
           D ++WRTLLG+C++H N E+G  A + +++ E      Y+LL+ ++A     + V + RK
Sbjct: 425 DALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRK 484

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
            +K   +    G SWIE+ N+VH+F V + SHP A  IY++L+++  + K +GY  D   
Sbjct: 485 SMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDF 544

Query: 477 VA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
           V   +     E FL +    HSEK+A+AFGL +T     +RI KNLR            S
Sbjct: 545 VLHDIEEEQKEQFLFQ----HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYIS 600

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +A  R+++VRD  R+HH ++G+CSC DYW
Sbjct: 601 MATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 168/330 (50%), Gaps = 14/330 (4%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+++       W  +I  FAQ      AI  +  M ++    PD FT++  L AC  + 
Sbjct: 7   VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV-PDRFTYSSVLSACTELG 65

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGY---AANGVIEAARSVFDNMPERDLVSWNS 160
            L   ++LH  VIR G    V V  +L+  Y   AA+G ++ +R VF+ MPE +++SW +
Sbjct: 66  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 125

Query: 161 IISCYTQA-SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           II+ Y Q+     EA++L+ +M    +  + F+   +L +C ++     G  ++  A ++
Sbjct: 126 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 185

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G      VGN+L+ MYA+ G ++ A   F  + +++++S+N+++ GY  + + +EA   F
Sbjct: 186 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 245

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC----LVD 335
            ++   G    + TF  LL G +  G + +G E  H  +    LK G K   C    L+ 
Sbjct: 246 NEIADTGIGISAFTFASLLSGAASIGAMGKG-EQIHGRL----LKGGYKSNQCICNALIS 300

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y R G +E A +V N     + + W +++
Sbjct: 301 MYSRCGNIEAAFQVFNEMEDRNVISWTSMI 330



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 109/212 (51%), Gaps = 13/212 (6%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VFD MPER+LV+W  +I+ + Q     +A+ L+  M       D FT   +LS+C  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC---GNLDSAFCVFSRMRKRDVLSW 259
           +G L +G  LH     +G    V VG +LVDMYAKC   G++D +  VF +M + +V+SW
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 260 NSMIVGYGVHGRGD-EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
            ++I  Y   G  D EAI  F +M+     P+  +F  +L  C +      G +     V
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ-----V 178

Query: 319 SRYNLKPGIKHYGC----LVDLYGRAGKLEKA 346
             Y +K GI    C    L+ +Y R+G++E A
Sbjct: 179 YSYAVKLGIASVNCVGNSLISMYARSGRMEDA 210


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 197/563 (34%), Positives = 309/563 (54%), Gaps = 52/563 (9%)

Query: 38   LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
            L  A  +F+++ NP+   WN  I    QS    + +  +  M  + L + +T T    L+
Sbjct: 574  LEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFL-KAETATIVRVLQ 632

Query: 98   AC-ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            A    +  LN  +E HG+V+R+G++  V V T+L+  Y  N  + +A++VFDNM  R++ 
Sbjct: 633  ASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIF 692

Query: 157  SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT------------------------ 192
            +WNS++S Y+      +AL+L  +M  E +  D  T                        
Sbjct: 693  AWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQM 752

Query: 193  -----------LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
                       + CLL +CA +  L  G  +H ++   GF+E V+V  AL+DMY+K  +L
Sbjct: 753  QQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSL 812

Query: 242  DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
             +A  VF R++ + + SWN MI+G+ + G G EAIS F +M   G  PD+ITF  LL  C
Sbjct: 813  KNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSAC 872

Query: 302  SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVL 360
             + GL+ EG +YF  M++ Y + P ++HY C+VDL GRAG L++A ++I+T     D  +
Sbjct: 873  KNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATI 932

Query: 361  WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
            W  LLGSC+IH+N++  E A KNL +LE  ++ +Y+L+  +Y+     E +   R+L+ +
Sbjct: 933  WGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGA 992

Query: 421  NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
             G++    WSWI+I  +VH F  D+K HPDA  IY +L +++   K +GY  D + V  +
Sbjct: 993  AGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQN 1052

Query: 481  GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
                E   +K    H+EKLAI +GL     G  +R++KN R            S+  +R+
Sbjct: 1053 MDEVEK--QKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARE 1110

Query: 529  LIVRDRVRYHHFRDGLCSCGDYW 551
            L +RD VR+HHFR+G CSC D+W
Sbjct: 1111 LFLRDGVRFHHFREGKCSCNDFW 1133



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 142/295 (48%), Gaps = 2/295 (0%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WNS +  F  S   L  +      L       D+  ++  LK C RV  +    E+HG +
Sbjct: 490 WNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCL 549

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
           I+ G++  V +   LM  Y     +E A  VF  MP  + + WN  I    Q+    + +
Sbjct: 550 IKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGV 609

Query: 176 KLYERMRFEDVGLDGFTLVCLL-SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           +L+ +M+F  +  +  T+V +L +S + +G LNMG   H      GF   VYVG +L+DM
Sbjct: 610 ELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDM 669

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y K  +L SA  VF  M+ R++ +WNS++ GY   G  ++A+    QM   G  PD +T+
Sbjct: 670 YVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTW 729

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
            G++ G +  G  +E + +F  M  +  + P      CL+        L+K  E+
Sbjct: 730 NGMISGYAMWGCGKEALAFFAQM-QQEGVMPNSASITCLLRACASLSLLQKGKEI 783



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 104/242 (42%), Gaps = 5/242 (2%)

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCY--TQASFHLEALKLYERMRFE 184
           + NL+  Y   G   +A  VF     R+ + WNS +  +  +  S H+  L++++ +  +
Sbjct: 459 AKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHI-VLEVFKELHGK 517

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            V  D       L +C  V  + +G+ +H    + GF   VY+  AL++ Y +C  L+ A
Sbjct: 518 GVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKA 577

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL-CGCSH 303
             VF  M   + L WN  I+      +  + +  F++M  +    ++ T + +L    S 
Sbjct: 578 NQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISE 637

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
            G +  G E  H  V R      +     L+D+Y +   L  A  V +     +   W +
Sbjct: 638 LGFLNMGKET-HGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNS 696

Query: 364 LL 365
           L+
Sbjct: 697 LV 698



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S SSSL  A  +F +IQN    +WN +I  FA      +AI  +N M    +  PD  TF
Sbjct: 807 SKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG-PDAITF 865

Query: 93  TFTLKACE 100
           T  L AC+
Sbjct: 866 TALLSACK 873


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  360 bits (925), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 204/564 (36%), Positives = 318/564 (56%), Gaps = 57/564 (10%)

Query: 39  SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           SY  L+F Q+  P    W ++IR +A      ++  +Y  M    +  P +FTF+   KA
Sbjct: 93  SYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVG-PVSFTFSALFKA 151

Query: 99  CERVKALNKCQELH-------GFV-------------IRSGY------------ERCVVV 126
           C     ++  +++H       GF              ++ G+            ER VV 
Sbjct: 152 CGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVS 211

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L+  YA  G +E+A  +FD++P +D+V+W ++++ Y Q     EAL+ +++M  +DV
Sbjct: 212 WTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKM--QDV 269

Query: 187 GL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES--VYVGNALVDMYAKCGNLD 242
           G+  D  TL  ++S+CA +GA+    ++  IA   GF  S  V VG+AL+DMY+KCG+ D
Sbjct: 270 GMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPD 329

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A+ VF  M++R+V S++SMI+GY +HGR   A+  F  ML     P+ +TF+G+L  CS
Sbjct: 330 EAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACS 389

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--L 360
           H GLVE+G + F  M   + + P   HY C+VDL GRAG LE+AL+++ T  P +P   +
Sbjct: 390 HAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKT-MPMEPNGGV 448

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           W  LLG+C+IH N +I +IA   L +LE    G+Y+LL+ IYA     E V++ RK+I+ 
Sbjct: 449 WGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIRE 508

Query: 421 NGIKTTPGWSWIEIGN-QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
            G K  PG SW E  N ++H F   D +HP +  I + L++++ R +  GY  +  L + 
Sbjct: 509 KGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPN--LGSA 566

Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
               ++D  E+    HSEKLA+A+GL  T  G +++I+KN+R            S    R
Sbjct: 567 PYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGR 626

Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
           ++IVRD +R+HHF +G CSCG++W
Sbjct: 627 EIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 150/362 (41%), Gaps = 41/362 (11%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS--VFDNMPERDLVSWNSII 162
            ++ +++H  +IR+G  +C  V T L+R      V   +    VF  +   +   W ++I
Sbjct: 55  FSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMI 114

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG-F 221
             Y       E+   Y RMR + VG   FT   L  +C     +++G  +H     +G F
Sbjct: 115 RGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGF 174

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV----------------- 264
              +YVGN+++D+Y KCG L  A  VF  M +RDV+SW  +IV                 
Sbjct: 175 ASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDD 234

Query: 265 --------------GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
                         GY  +GR  EA+ +F++M   G   D +T  G++  C+  G V+  
Sbjct: 235 LPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKH- 293

Query: 311 VEYFHMMVSRYNLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
             +   +  R    P   +     L+D+Y + G  ++A +V       +   + +++   
Sbjct: 294 ANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGY 353

Query: 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKT 425
            +H           ++++ E         +  + AC+     E+G     K+ K  G+  
Sbjct: 354 AMHGRAHSALQLFHDMLKTE-IRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAP 412

Query: 426 TP 427
           +P
Sbjct: 413 SP 414



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 111/242 (45%), Gaps = 5/242 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A  LF+ +      AW +++  +AQ+  P +A+ Y+  M    +   D  T    + 
Sbjct: 225 MESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMET-DEVTLAGVIS 283

Query: 98  ACERVKALNKCQELHGFVIRSGYERC--VVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           AC ++ A+     +     RSG+     VVV + L+  Y+  G  + A  VF+ M ER++
Sbjct: 284 ACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNV 343

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH-R 214
            S++S+I  Y        AL+L+  M   ++  +  T + +LS+C+H G +  G  L  +
Sbjct: 344 FSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAK 403

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGD 273
           +    G   S      +VD+  + G L+ A  +   M  + +   W +++    +HG  D
Sbjct: 404 MEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPD 463

Query: 274 EA 275
            A
Sbjct: 464 IA 465


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 201/547 (36%), Positives = 303/547 (55%), Gaps = 27/547 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA     SL YA+ +F+ +       W++LI  F       QA   +  ML  
Sbjct: 161 GTALLDMYA--KCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ 218

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            L      +    L+AC  +  L   ++LH  + +SG    +    +L+  YA  G+I+ 
Sbjct: 219 GLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQ 278

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A ++FD M  +D VS+++++S Y Q     EA  ++++M+  +V  D  T+V L+ +C+H
Sbjct: 279 AIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSH 338

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL  G   H      G      + NAL+DMYAKCG +D +  VF+ M  RD++SWN+M
Sbjct: 339 LAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTM 398

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I GYG+HG G EA + F +M   GF PD +TF+ LL  CSH GLV EG  +FH+M   Y 
Sbjct: 399 IAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYG 458

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIA 380
           L P ++HY C+VDL  R G L++A E I  S P  +D  +W  LLG+C++++N+++G+  
Sbjct: 459 LTPRMEHYICMVDLLSRGGFLDEAYEFIQ-SMPLRADVRVWVALLGACRVYKNIDLGKKV 517

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + + +L     G++VLL+ IY+     +  A  R + K  G K +PG SWIEI   +H 
Sbjct: 518 SRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHA 577

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY----HS 496
           FV  D+SHP +  IYR+L+ I+   K +GY  D S V       +D  E+        HS
Sbjct: 578 FVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVL------QDLEEEEKEKALICHS 631

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           EKLAIA+G+ +  +  ++ + KNLR            S+   R +IVRD  R+HHF++G 
Sbjct: 632 EKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQ 691

Query: 545 CSCGDYW 551
           CSCGD+W
Sbjct: 692 CSCGDFW 698



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 144/294 (48%), Gaps = 18/294 (6%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P+ +TF F LKAC  +   +  + +H   I +G +  + VST L+  Y     +  A  +
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALK--LYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           F  MP RDLV+WN++++ Y     +  A+   L  +M+   +  +  TLV LL   A  G
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127

Query: 205 ALNMGIFLHRI---AC-------EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
           AL  G  +H     AC       +    + V +G AL+DMYAKCG+L  A  VF  M  R
Sbjct: 128 ALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR 187

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG---FHPDSITFLGLLCGCSHQGLVEEGV 311
           + ++W+++I G+ +  R  +A   FK ML  G     P SI     L  C+    +  G 
Sbjct: 188 NEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMG- 244

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           E  H ++++  +   +     L+ +Y +AG +++A+ + +  +  D V +  L+
Sbjct: 245 EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 298



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 11/192 (5%)

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           V  + +T    L +C+ +   + G  +HR A   G    ++V  AL+DMY KC  L  A 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF--KQMLMAGFHPDSITFLGLLCGCSH 303
            +F+ M  RD+++WN+M+ GY  HG    A++     QM M    P++ T + LL   + 
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 304 QGLVEEGVEYFHMMV---------SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           QG + +G       +         S+  L  G+     L+D+Y + G L  A  V +   
Sbjct: 126 QGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 185

Query: 355 PSDPVLWRTLLG 366
             + V W  L+G
Sbjct: 186 ARNEVTWSALIG 197


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 205/569 (36%), Positives = 307/569 (53%), Gaps = 51/569 (8%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y++     L  A+ +F+   NP    WNS+IRA+ +S    +A+  Y  M+     
Sbjct: 89  LINLYSLFHKCDL--ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGL 146

Query: 86  RPDTFTFTFTLKACERVKALNKCQEL-----------------------HGFVIRSGYER 122
             D F     +    ++  L + +E+                         +V R  +++
Sbjct: 147 ERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQ 206

Query: 123 CV----VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
            V    V    +M GYA NG       +FD M   + V+WN II+ Y Q     EA+  +
Sbjct: 207 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN-VTWNVIIAAYMQNGHAKEAISSF 265

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
            +MR E+   +  T V +L + A++ A   G+  H    +MGF+ +  VGN+L+DMYAKC
Sbjct: 266 HQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKC 325

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G LD +  +F+ M  +D +SWN+M+ GY VHG GD AI+ F  M  +    DS++F+ +L
Sbjct: 326 GQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVL 385

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C H GLVEEG + FH M  +Y++KP ++HY C+VDL GRAG  ++ L  I    P +P
Sbjct: 386 SACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKV-MPVEP 444

Query: 359 V--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
              +W  LLGSC++H NV++GE+A+ +LV+LE  +   +V+L++IYA +       + R 
Sbjct: 445 DAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARS 504

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
            +   G+K TPG SW+E+ N+VH F V DKSHP  + ++     ++ + + IGY  D S 
Sbjct: 505 KMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSC 564

Query: 477 V--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIA---------- 524
           V   V     E FL      HSE+LAI F L  TP G++++IVKNLR  A          
Sbjct: 565 VLQNVEEEDKEMFLYS----HSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFIS 620

Query: 525 --YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              +R +IVRD  R+HHF DG+CSC DYW
Sbjct: 621 KITTRRIIVRDATRFHHFEDGICSCNDYW 649



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 152/379 (40%), Gaps = 99/379 (26%)

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
           K LN   ++H  +I SG++    + T+L+  Y+     + ARSVFD+ P    + WNS+I
Sbjct: 63  KHLNPLLQIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMI 121

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
             YT++  + EAL++Y                C++                    + G  
Sbjct: 122 RAYTRSKQYNEALEMY---------------YCMVE-------------------KGGLE 147

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
             V++G  LVDMY+K G+L  A  VF +M KRDV++WN+MI G         A   F QM
Sbjct: 148 RDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQM 207

Query: 283 ----------LMAGF--------------------------------------------- 287
                     +MAG+                                             
Sbjct: 208 VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQ 267

Query: 288 ------HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
                 HP+S+TF+ +L   ++     EG+  FH  + +            L+D+Y + G
Sbjct: 268 MRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCG 326

Query: 342 KLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           +L+ + ++ N     D V W  +L    +H + +   IA+ +L+Q E+    D V   ++
Sbjct: 327 QLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRA-IALFSLMQ-ESQVQIDSVSFVSV 384

Query: 402 YACTKDEEGVARTRKLIKS 420
            +  +    V   RK+  S
Sbjct: 385 LSACRHAGLVEEGRKIFHS 403


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 194/529 (36%), Positives = 303/529 (57%), Gaps = 24/529 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQ +F++I      +WN++I  +A + +  +A+  +  M+  ++ +PD  T    + AC 
Sbjct: 188 AQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNV-KPDESTMVTVVSACA 246

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +  ++   +++H ++   G    + +   L+  Y+  G +E A  +F  +  +D++SWN+
Sbjct: 247 QSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNT 306

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH-----RI 215
           +I  YT  + + EAL L++ M       +  T++ +L +CA +GA++ G ++H     RI
Sbjct: 307 MIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRI 366

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
               G   +  +  +L+DMYAKCG++++A  VF+ M  R + + N+MI G+ +HGR + A
Sbjct: 367 K---GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAA 423

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
              F +M   G  PD ITF+GLL  CSH G+++ G   F  M   Y + P ++HYGC++D
Sbjct: 424 FDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMID 483

Query: 336 LYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           L G  G  ++A E+INT +   D V+W +LL +CK+H NVE+GE   + L+++E  + G 
Sbjct: 484 LLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGS 543

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ IYA       VA  R L+   G+K  PG S IEI + VH+F++ DK HP    I
Sbjct: 544 YVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREI 603

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y  LEE+    +  G+  D S   V     E+F + +  +HSEKLAIAFGL +T  GT L
Sbjct: 604 YGMLEEMEVLLEEAGFVPDTS--EVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKL 661

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            IVKNLR            S  Y R++I RDR R+HHFRDG+CSC DYW
Sbjct: 662 TIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 188/348 (54%), Gaps = 35/348 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA  +F  IQ P    WN++ R  A S  P+ AI  Y  M+   L  P+++TF F LK
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGL-LPNSYTFPFLLK 111

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           +C ++K   + Q++HG V++ GYE                               R VV 
Sbjct: 112 SCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVS 171

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L+ GYA+ G IE+A+ +FD +P +D+VSWN+IIS Y     + EAL L++ M   +V
Sbjct: 172 YTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNV 231

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T+V ++S+CA  G++ +G  +H    + G   ++ + NAL+D+Y+KCG +++A  
Sbjct: 232 KPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACG 291

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F  +  +DV+SWN+MI GY       EA+  F++ML +G +P+ +T L +L  C+  G 
Sbjct: 292 LFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGA 351

Query: 307 VEEGVEYFHMMVSR--YNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           ++ G  + H+ + +    +         L+D+Y + G +E A +V N+
Sbjct: 352 IDFG-RWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNS 398


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 199/557 (35%), Positives = 296/557 (53%), Gaps = 61/557 (10%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +++  T +W  LI  F Q     +++  +N M  A L   D F     +  C 
Sbjct: 348 ARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQM-RAELMTVDQFALATIISGCS 406

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW-- 158
               +   ++LH   ++SG+ R VV+S +L+  YA  G ++ A S+F +M ERD+VSW  
Sbjct: 407 NRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTG 466

Query: 159 -----------------------------NSIISCYTQASFHLEALKLYERMRFE-DVGL 188
                                        N+++  Y Q     + LK+Y  M  E DV  
Sbjct: 467 MLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIP 526

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
           D  T V L   CA +GA  +G  +     ++G +    V NA++ MY+KCG +  A  +F
Sbjct: 527 DWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIF 586

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
             + ++D++SWN+MI GY  HG G +AI  F  ML  G  PD I+++ +L  CSH GLV+
Sbjct: 587 DFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQ 646

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLG 366
           EG  YF M+   +N+ PG++H+ C+VDL  RAG L +A  +I+   P  P   +W  LL 
Sbjct: 647 EGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLID-EMPMKPTAEVWGALLS 705

Query: 367 SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTT 426
           +CK H N E+ E+A K+L  L++  +G Y+LLA IYA        A+ RKL++  GIK  
Sbjct: 706 ACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKN 765

Query: 427 PGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSED 486
           PG+SW+E+ N+VH F  +D SHP    I  KL+E+M +   +GY + ESL          
Sbjct: 766 PGYSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGYVRTESL---------- 815

Query: 487 FLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDR 534
              +S  +HSEKLA+AFG+   P    + I+KNLR            S    R+ ++RD 
Sbjct: 816 ---RSEIHHSEKLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDA 872

Query: 535 VRYHHFRDGLCSCGDYW 551
           VR+HHF+ G CSCGDYW
Sbjct: 873 VRFHHFKGGSCSCGDYW 889



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 181/376 (48%), Gaps = 44/376 (11%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           +L  YA S    + +A  LF  +      +WN ++ A +QS    +A+     M    + 
Sbjct: 234 MLAGYAKSYG--VDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGV- 290

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           R D+ T+T +L AC ++ +L   ++LH  VIRS       V++ ++  YA  G  + AR 
Sbjct: 291 RLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARR 350

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF ++ +R+ VSW  +I  + Q     E+L+L+ +MR E + +D F L  ++S C++   
Sbjct: 351 VFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMD 410

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           + +   LH ++ + G   +V + N+L+ MYAKCGNL +A  +FS M +RD++SW  M+  
Sbjct: 411 MCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTA 470

Query: 266 YGVHGRGDEAISFFKQM---------LMAGFH-----------------------PDSIT 293
           Y   G   +A  FF  M          M G +                       PD +T
Sbjct: 471 YSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVT 530

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI----KHYGCLVDLYGRAGKLEKALEV 349
           ++ L  GC+  G  + G +     ++ + +K G+         ++ +Y + G++ +A ++
Sbjct: 531 YVTLFRGCADMGANKLGDQ-----ITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKI 585

Query: 350 INTSSPSDPVLWRTLL 365
            +  S  D V W  ++
Sbjct: 586 FDFLSRKDLVSWNAMI 601



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 171/379 (45%), Gaps = 50/379 (13%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           ++N YA     SLS A+ LF ++      +WN+L+  + QS   L A+  +  M  +  S
Sbjct: 101 MMNGYA--KLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDS 158

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE--------------RC-------- 123
            P+ FTF   +K+C  +       +L G + + G++              RC        
Sbjct: 159 LPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASK 218

Query: 124 ---------VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
                    V    +++ GYA +  ++ A  +F++MPERD+VSWN ++S  +Q+    EA
Sbjct: 219 QFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREA 278

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L +   M    V LD  T    L++CA + +L  G  LH            YV +A+V++
Sbjct: 279 LSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVEL 338

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAKCG    A  VFS +R R+ +SW  +I G+  +G   E++  F QM       D    
Sbjct: 339 YAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFAL 398

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSR----YNLKPG----IKHYGCLVDLYGRAGKLEKA 346
             ++ GCS++           M ++R     +LK G    +     L+ +Y + G L+ A
Sbjct: 399 ATIISGCSNR---------MDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNA 449

Query: 347 LEVINTSSPSDPVLWRTLL 365
             + ++    D V W  +L
Sbjct: 450 ESIFSSMEERDIVSWTGML 468



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 123/280 (43%), Gaps = 37/280 (13%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           E  V+    +M GYA  G +  A  +F  MP RD+ SWN+++S Y Q+   L+A++ +  
Sbjct: 92  EPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVS 151

Query: 181 MRFEDVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           MR     L + FT  C + SC  +G   + + L  +  + GF     V   +VDM+ +CG
Sbjct: 152 MRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCG 211

Query: 240 NLDSA------------FC-------------------VFSRMRKRDVLSWNSMIVGYGV 268
            +D A            FC                   +F  M +RDV+SWN M+     
Sbjct: 212 AVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQ 271

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
            GR  EA+S    M   G   DS T+   L  C+    +  G +  H  V R    P I 
Sbjct: 272 SGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQ-LHAQVIRS--LPCID 328

Query: 329 HY--GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            Y    +V+LY + G  ++A  V ++    + V W  L+G
Sbjct: 329 PYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIG 368



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 2/247 (0%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A S   ++  A+  F+ +       WN+++ A+ Q  +    +  Y+ ML      PD  
Sbjct: 470 AYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWV 529

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T+    + C  + A     ++ G  ++ G      V   ++  Y+  G I  AR +FD +
Sbjct: 530 TYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFL 589

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
             +DLVSWN++I+ Y+Q     +A+++++ M  +    D  + V +LSSC+H G +  G 
Sbjct: 590 SRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGK 649

Query: 211 F-LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSMIVGYGV 268
           F    +  +      +   + +VD+ A+ GNL  A  +   M  +     W +++     
Sbjct: 650 FYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKT 709

Query: 269 HGRGDEA 275
           HG  + A
Sbjct: 710 HGNNELA 716



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 34/183 (18%)

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM---------------------- 234
           L SC   GAL     LH     +G   +V++ N L+                        
Sbjct: 35  LRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPN 94

Query: 235 ----------YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
                     YAK G+L  A  +F RM +RDV SWN+++ GY   GR  +A+  F  M  
Sbjct: 95  VITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRR 154

Query: 285 AGFH-PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
           +G   P++ TF   +  C   G  E  ++   ++ +++  +        +VD++ R G +
Sbjct: 155 SGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLL-TKFGFQGDPDVATGIVDMFVRCGAV 213

Query: 344 EKA 346
           + A
Sbjct: 214 DFA 216


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 203/558 (36%), Positives = 295/558 (52%), Gaps = 55/558 (9%)

Query: 43  LLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
           + FN    P T  WN +IR  + S  P +++  Y+ ML  S    + +TF F LKAC  +
Sbjct: 65  VFFNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPH-NAYTFPFLLKACSNL 123

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
            A  +  ++H  + + GY   +    +L+  YA  G  + A  +FD + E D VSWNS+I
Sbjct: 124 SAFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVI 183

Query: 163 --------------------------------SCYTQASFHLEALKLYERMRFEDVGLDG 190
                                           S Y QA  + EAL+L+  M+  +V  D 
Sbjct: 184 KGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDN 243

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
            +L   LS+C+ +GAL  G ++H  A +        +   L+DMYAKCG ++ A  VF  
Sbjct: 244 VSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKN 303

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           M+ + V  W ++I GY  HG G EAIS F +M   G  P++ITF  +L  CS+ GLVEEG
Sbjct: 304 MKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEG 363

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSC 368
              F+ +   YNLKP I+HYGC+VDL GRAG L +A   I    P  P  V+W +LL +C
Sbjct: 364 KSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQ-KMPLKPNAVIWGSLLKAC 422

Query: 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPG 428
           +IH+N+E+GE   + L+++++   G YV +A I+A  K  +  A TR+L++  G+   PG
Sbjct: 423 QIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPG 482

Query: 429 WSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT---KDESLVAVSGSSSE 485
            S I +    H+F+  D+SH +   I  K   +  + +  GY    +D  L  V     E
Sbjct: 483 CSAISLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKE 542

Query: 486 DFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRD 533
             + +    HSEKLAI +GL  T  GT++RI+KNLR            S  Y RD+++RD
Sbjct: 543 AIVHQ----HSEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRD 598

Query: 534 RVRYHHFRDGLCSCGDYW 551
           R R+HHF+DG CSCGDYW
Sbjct: 599 RTRFHHFKDGKCSCGDYW 616



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 159/379 (41%), Gaps = 48/379 (12%)

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
           +F F   L   ++     + +++H  +++SG  +     T  +    ++     A  VF 
Sbjct: 8   SFAFEHNLSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFF 67

Query: 149 NMPER-DLVSWNSII---SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           N  +R D   WN +I   SC  Q      +L LY RM       + +T   LL +C+++ 
Sbjct: 68  NGFDRPDTFLWNLMIRGLSCSDQPD---RSLLLYHRMLCCSAPHNAYTFPFLLKACSNLS 124

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           A      +H    + G+   +Y  N+L++ YA  GN   A  +F R+++ D +SWNS+I 
Sbjct: 125 AFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIK 184

Query: 265 GYGVHGRGDEAISFFKQM----------------LMAG--------FH--------PDSI 292
           GY   G  D A++ F++M                + AG        FH        PD++
Sbjct: 185 GYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNV 244

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           +    L  CS  G +E+G ++ H   ++   +        L+D+Y + G++E+AL V   
Sbjct: 245 SLASALSACSQLGALEQG-KWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKN 303

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYACTKD--- 407
                  +W  L+     H    +G  A+   ++++            A + AC+     
Sbjct: 304 MKTKSVQVWTALISGYAYH---GLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLV 360

Query: 408 EEGVARTRKLIKSNGIKTT 426
           EEG +    + +   +K T
Sbjct: 361 EEGKSVFNTIERDYNLKPT 379


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 205/567 (36%), Positives = 313/567 (55%), Gaps = 58/567 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L Y+  +F++I+N     WN+++RA+ QS S  +A+  Y  M+  ++  PD +T+   ++
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVG-PDNYTYPLVVQ 137

Query: 98  ACERVKALN-KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP----- 151
           AC  V+ L    +E+H  V++ G++  V V   L+  YA  G +  AR +FD  P     
Sbjct: 138 ACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSV 196

Query: 152 -----------------------------ERDLVSWNSIISCYTQASFHLEALKLYERMR 182
                                        E+D+VSW+++IS Y Q   + EAL ++  M 
Sbjct: 197 SWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 256

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV----DMYAKC 238
              + LD   +V +LS+CAH+  +  G  +H +   MG    V + NAL+    DMY KC
Sbjct: 257 ANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKC 316

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G +++A  VF+ M ++ V SWN++I+G  V+G  + ++  F +M   G  P+ ITF+G+L
Sbjct: 317 GCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVL 376

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C H GLV+EG  +F  M+ ++ ++P +KHYGC+VDL GRAG L +A ++I  S P  P
Sbjct: 377 GACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIE-SMPMAP 435

Query: 359 --VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
               W  LLG+CK H + E+GE   + L++L+    G +VLL+ I+A   D E V   R 
Sbjct: 436 DVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRG 495

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
           ++K  G+  TPG S IE    VH+F+  DK+HP  + +   L E+  R K  GY  D + 
Sbjct: 496 MMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNE 555

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
           V++     E   E +   HSEKLAIAFGL T    T +RI+KNLR            S A
Sbjct: 556 VSLDIDEEEK--ETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKA 613

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           Y+R+++VRDR R+H+F++G CSC DYW
Sbjct: 614 YAREIVVRDRHRFHYFKEGACSCMDYW 640



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 156/343 (45%), Gaps = 51/343 (14%)

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGF------VIRSGYERCVVVSTNLMRG 133
           L ++ +   TF  T TL   E    L+ C  L  F      +I +G+      ++ L++ 
Sbjct: 13  LKSTFNHKPTFKPTITLSILE--THLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKF 70

Query: 134 YAANGVI--EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191
              +  I  + +  +FD +   +   WN+++  Y Q++   +AL LY+ M   +VG D +
Sbjct: 71  STDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNY 130

Query: 192 TLVCLLSSCAHVGALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGN---------- 240
           T   ++ +CA V  L  G   +H    ++GF   VYV N L++MYA CGN          
Sbjct: 131 TYPLVVQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDE 189

Query: 241 ---LDS---------------------AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              LDS                     A+ +F+ M ++D++SW+++I GY  +G  +EA+
Sbjct: 190 SPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEAL 249

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV-- 334
             F +M   G   D +  + +L  C+H  +V+ G +  H +V R  ++  +     L+  
Sbjct: 250 VMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG-KMIHGLVIRMGIESYVNLQNALIHM 308

Query: 335 --DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
             D+Y + G +E ALEV N         W  L+    ++  VE
Sbjct: 309 YSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVE 351


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 191/526 (36%), Positives = 304/526 (57%), Gaps = 18/526 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F++I      +WN++I  + ++ +  +A+  +  M+  ++ RPD  T    + A  
Sbjct: 148 ARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNV-RPDESTMVTVISASA 206

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R  ++   +++H ++   G+   + +   L+  Y+  G +E A  +F  +  +D++SWN 
Sbjct: 207 RSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNI 266

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE-- 218
           +I  YT  + + EAL L++ M       +  T++ +L +CAH+GA+++G ++H    +  
Sbjct: 267 LIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRL 326

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
            G   +  +  +L+DMY+KCG++++A  VF+ M  + + +WN+MI G+ +HGR + A   
Sbjct: 327 KGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDI 386

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M      PD ITF+GLL  CSH G+++ G   F  M   Y + P ++HYGC++DL G
Sbjct: 387 FSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLG 446

Query: 339 RAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
            +G  ++A E+I+T +   D V+W +LL +CK+H NVE+GE   +NL ++E  + G YVL
Sbjct: 447 HSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVL 506

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ IYA       VAR R L+   G+K  PG S IEI + VH+F++ DK HP    IY  
Sbjct: 507 LSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 566

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           LEE+    +  G+  D S   V     E+F E +  +HSEKLAIAFGL +T   T L IV
Sbjct: 567 LEEMEVLLQEAGFVPDTS--EVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIV 624

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S  Y R++I RDR R+HHFRDG+CSC DYW
Sbjct: 625 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 198/369 (53%), Gaps = 39/369 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA  +F  IQ P    WN++ R  A S  P+ A+  Y  M+   L  P+++TF F LK
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGL-LPNSYTFPFLLK 71

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           +C ++KA  +  ++HG V++ GYE                               R VV 
Sbjct: 72  SCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVS 131

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L+ GYA+ G IE+AR++FD +P +D+VSWN++IS Y +   + EAL+L++ M   +V
Sbjct: 132 YTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNV 191

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T+V ++S+ A  G++ +G  +H    + GF  ++ + NAL+D Y+KCG +++A  
Sbjct: 192 RPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACG 251

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F  +  +DV+SWN +I GY       EA+  F++ML +G  P+ +T L +L  C+H G 
Sbjct: 252 LFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGA 311

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYG----CLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           ++ G  + H+ + +  LK G+ +       L+D+Y + G +E A +V N+        W 
Sbjct: 312 IDIG-RWIHVYIDK-RLK-GVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWN 368

Query: 363 TLLGSCKIH 371
            ++    +H
Sbjct: 369 AMIFGFAMH 377



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 27/221 (12%)

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           L  A  VF  +++ ++L WN+M  G+ +      A+  +  M+  G  P+S TF  LL  
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           C+     +EG++  H  V +   +  +  +  L+ +Y +  +LE A +V + SS  D V 
Sbjct: 73  CAKLKASKEGLQ-IHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVS 131

Query: 361 WRTLL------GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD-EEGVAR 413
           +  L+      G  +  RN+   EI +K++V   A  +G        Y  T + +E +  
Sbjct: 132 YTALVTGYASRGYIESARNM-FDEIPVKDVVSWNAMISG--------YVETGNYKEALEL 182

Query: 414 TRKLIKSN----------GIKTTPGWSWIEIGNQVHKFVVD 444
            ++++K+N           I  +     IE+G QVH ++ D
Sbjct: 183 FKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIAD 223


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 220/597 (36%), Positives = 326/597 (54%), Gaps = 85/597 (14%)

Query: 32  ISVSSS---LSYAQLLFNQ-IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML-MASLSR 86
           I VSSS   L ++ L+FN  +  P   A+N+L++AF+Q  +    I Y+N+ L + +   
Sbjct: 65  IGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPN 124

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           PD +TFT  LKAC  +  + + Q++H FV + G E  + V  +L+  Y   G    A+ +
Sbjct: 125 PDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKL 184

Query: 147 FDNMPERDLVSWNSIISCY-------------------------TQASFHL------EAL 175
           FD M  RD+VSWN++IS Y                         T  S +       EA 
Sbjct: 185 FDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEAR 244

Query: 176 KLYERMRFEDV------------------------------GL--DGFTLVCLLSSCAHV 203
           +L+E M   +V                              GL  +  TLV +LS+CAH+
Sbjct: 245 QLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHL 304

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           GAL++G ++HR          +++GNAL DMYAKCG +  A  VF  M +RDV+SW+ +I
Sbjct: 305 GALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIII 364

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
           +G  ++G  +EA +FF +M+  G  P+ I+F+GLL  C+H GLV++G+EYF MM   Y +
Sbjct: 365 MGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGI 424

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAM 381
            P I+HYGC+VDL  RAG+L++A  +IN S P  P  ++W  LLG C+I+++ E GE  +
Sbjct: 425 TPKIEHYGCVVDLLSRAGRLDQAESLIN-SMPMQPNVIVWGALLGGCRIYKDAERGERVV 483

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
             +++L++  +G  V LA +YA     +  A  R  ++ N    TPG SWIEI N V++F
Sbjct: 484 WRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEF 543

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
            + D SHP +  IY  + E+  + K  GY     LV  +    E   E + + HSEKLA+
Sbjct: 544 FMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEK--EDALSTHSEKLAL 601

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           AFGL  T +GT++RIVKNLR            S    R+++VRDR R+HHF+DG CS
Sbjct: 602 AFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 135/295 (45%), Gaps = 12/295 (4%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVSS-----SLSYAQLLFNQIQNPQTQAWNSLIRAFAQS 66
           ++KAR   +   E  L S++  +S      +L  A+ LF  +      +WN++I  +AQ+
Sbjct: 209 VDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQN 268

Query: 67  LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV 126
                AI  +  M       P+  T    L AC  + AL+  + +H F+ R+  E  + +
Sbjct: 269 EKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFL 328

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
              L   YA  G +  A+ VF  M ERD++SW+ II       +  EA   +  M  + +
Sbjct: 329 GNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGL 388

Query: 187 GLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
             +  + + LL++C H G ++ G+ +   +    G    +     +VD+ ++ G LD A 
Sbjct: 389 EPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAE 448

Query: 246 CVFSRMR-KRDVLSWNSMIVG---YGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
            + + M  + +V+ W +++ G   Y    RG+  +  ++ + +   H  S+ +L 
Sbjct: 449 SLINSMPMQPNVIVWGALLGGCRIYKDAERGERVV--WRILELDSNHSGSLVYLA 501


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 209/580 (36%), Positives = 313/580 (53%), Gaps = 49/580 (8%)

Query: 19  HEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFA-QSLSPLQAIFYYN 77
           H I    LL   + S+ + +SYA ++F+    P    +N++I+  A  + S   +   + 
Sbjct: 32  HPIPTNKLLKQLS-SIFAPISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFR 90

Query: 78  HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL------- 130
            ++      P+ ++F F  K C     + + +++    I+ G E  + V+  L       
Sbjct: 91  SLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNL 150

Query: 131 ------------------------MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
                                   + GYA  G ++ AR +FD MPE+D+VSW ++IS   
Sbjct: 151 DFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCL 210

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
           Q  + +EAL ++  M  + +  + +TL   L++CA++ AL+ G ++H    +     +  
Sbjct: 211 QVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNER 270

Query: 227 VGNALVDMYAKCGNLDSAFCVF-SRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           +   L+DMYAKCG L+ A  +F S  R KR V  WN+MI G+ VHG+  EAI  F+QM +
Sbjct: 271 LLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKI 330

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
               P+ +TF+ LL  CSH   VEEG  YF  M S Y +KP ++HYGCLVDL GRAG+L+
Sbjct: 331 EKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLK 390

Query: 345 KALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403
           +A E+I++     D  +W  LL +CKIH++ E+GE   K + +L+    G +VLLA IY+
Sbjct: 391 EAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYS 450

Query: 404 CTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMH 463
            T +       R+ I  +G K TPG S IE+    H+F+V D+SHP    +Y  L+E++ 
Sbjct: 451 LTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMIT 510

Query: 464 RAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-- 521
           + K  GY  +   V +    +ED  E +   HSEKLAIAFGL  T   T +RIVKNLR  
Sbjct: 511 KLKIAGYIPESGEVLLDIDDNED-RETALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVC 569

Query: 522 ----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                     S  Y R++IVRDR+RYHHF+DG CSC DYW
Sbjct: 570 SDCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 205/557 (36%), Positives = 317/557 (56%), Gaps = 43/557 (7%)

Query: 29  SYAISVSSSLSYAQLLFNQI----QNPQTQAWNSLIRAFAQS-LSPLQAIFYYNHMLMAS 83
           ++ ++ S+S+S+ + +  QI      P +  WN LI+++++S L   +AI  Y  ++   
Sbjct: 18  NHLLNQSNSISHVKQIHAQILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQ 77

Query: 84  LSR--PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
            +   PD  T+ F LKAC  + +L + +++H  V++ G+E    +  +L+  YA+ G +E
Sbjct: 78  ENELFPDKHTYPFVLKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLE 137

Query: 142 AARSVFDNMPE-RDLVSWNSIISCYTQAS-------FHLEALKLYERMRFEDVGLDGFTL 193
            AR VFD M E R++VSWN +I  Y +            E +K+YE         D +T+
Sbjct: 138 TARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMMKVYEP--------DCYTM 189

Query: 194 VCLLSSCAHVGALNMGIFLHRIA---CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
             ++ +C  +G+L++G+++H      C+   V  V V   LVDMY KCG+L+ A  VF  
Sbjct: 190 QSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEG 249

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEE 309
           M  RDV SWNS+I+G+ VHG+   A+ +F +M+ +    P+SITF+G+L  C+H G+V+E
Sbjct: 250 MSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDE 309

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSC 368
           G+ YF MM   YN++P + HYGCLVDLY RAG +++AL V++      D V+WR+LL +C
Sbjct: 310 GLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDAC 369

Query: 369 -KIHRNVEIGEIAMKNLVQLEAA-SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTT 426
            K H +VE+ E   K + +   +   G YVLL+ +YA       V   RKL+   G+   
Sbjct: 370 YKQHASVELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKK 429

Query: 427 PGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSED 486
           PG S IEI    H+F   D +HP +  IY+ + EI  + + +GY  D S   +    +E 
Sbjct: 430 PGCSLIEINGAAHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYLPDYSGAPLIDEINEG 489

Query: 487 FLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDR 534
             + +   HSE+LAIAFGL  +     +R+ KNLR            S  Y+ ++IVRDR
Sbjct: 490 -KQNTMRLHSERLAIAFGLLNSKPSMPIRVFKNLRVCNDCHKVTKLISRIYNVEIIVRDR 548

Query: 535 VRYHHFRDGLCSCGDYW 551
           VR+HHF+DG CSC DYW
Sbjct: 549 VRFHHFKDGSCSCMDYW 565


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 186/510 (36%), Positives = 289/510 (56%), Gaps = 16/510 (3%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W ++I+  AQ+    +AI  +  M +  L + D + F   L AC  + A+N+ +++H  
Sbjct: 237 SWAAMIKGLAQNGLAKEAIECFREMKVQGL-KMDQYPFGSVLPACGGLGAINEGKQIHAC 295

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           +IR+ ++  + V + L+  Y     +  A++VFD M ++++VSW +++  Y Q     EA
Sbjct: 296 IIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEA 355

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           +K++  M+   +  D +TL   +S+CA+V +L  G   H  A   G +  V V N+LV +
Sbjct: 356 VKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTL 415

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y KCG++D +  +F+ M  RD +SW +M+  Y   GR  E I  F +M+  G  PD +T 
Sbjct: 416 YGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTL 475

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
            G++  CS  GLVE+G  YF +M S Y + P I HY C++DL+ R+G+LE+A+  IN   
Sbjct: 476 TGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMP 535

Query: 355 -PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
            P D + W TLL +C+   N+EIG+ A ++L++L+      Y LL++IYA     + VA+
Sbjct: 536 FPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQ 595

Query: 414 TRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD 473
            R+ ++   +K  PG SWI+   ++H F  DD+S P  D IY KLEE+ ++    GY  D
Sbjct: 596 LRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPD 655

Query: 474 ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------ 521
            S   V     E    K   YHSE+LAIAFGL   P G  +R+ KNLR            
Sbjct: 656 TSF--VHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHI 713

Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           S    R+++VRD VR+H F+DG CSCGD+W
Sbjct: 714 SSVTGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 214/473 (45%), Gaps = 87/473 (18%)

Query: 13  NKARQAHEIHGE----------WLLNS--YAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           N++R    IHG           +L N+  +A ++  S +YA+ +F++I  P   +WN+L+
Sbjct: 20  NQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLL 79

Query: 61  RAFAQ-----------------------------SLSPL--QAIFYYNHMLMASLSRPDT 89
            A+++                             SLS L   A+  YN M+    +    
Sbjct: 80  LAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTR 139

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYE---------------------------- 121
            T    LK       ++  +++HG VI+ G+E                            
Sbjct: 140 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYG 199

Query: 122 ---RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
              R  V+  +LM G  A G+IE A  +F  M E+D VSW ++I    Q     EA++ +
Sbjct: 200 LDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECF 258

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             M+ + + +D +    +L +C  +GA+N G  +H       F + +YVG+AL+DMY KC
Sbjct: 259 REMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKC 318

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
             L  A  VF RM++++V+SW +M+VGYG  GR +EA+  F  M  +G  PD  T    +
Sbjct: 319 KCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAI 378

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY----GCLVDLYGRAGKLEKALEVINTSS 354
             C++   +EEG ++    ++      G+ HY      LV LYG+ G ++ +  + N  +
Sbjct: 379 SACANVSSLEEGSQFHGKAITS-----GLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMN 433

Query: 355 PSDPVLWRTLLGS-CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
             D V W  ++ +  +  R VE  ++  K +VQ      G   L   I AC++
Sbjct: 434 VRDAVSWTAMVSAYAQFGRAVETIQLFDK-MVQHGLKPDG-VTLTGVISACSR 484



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 16/160 (10%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LFN++      +W +++ A+AQ    ++ I  ++ M+   L +PD  T T  + AC R  
Sbjct: 428 LFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGL-KPDGVTLTGVISACSRAG 486

Query: 104 ALNKCQEL-------HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-ERDL 155
            + K Q         +G V   G+  C++   +L   ++ +G +E A    + MP   D 
Sbjct: 487 LVEKGQRYFKLMTSEYGIVPSIGHYSCMI---DL---FSRSGRLEEAMRFINGMPFPPDA 540

Query: 156 VSWNSIIS-CYTQASFHLEALKLYERMRFEDVGLDGFTLV 194
           + W +++S C  + +  +        +  +     G+TL+
Sbjct: 541 IGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLL 580


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 213/528 (40%), Positives = 301/528 (57%), Gaps = 17/528 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           + +A+ LF+ +       WN LIRA+A+      AI  Y  M+   +  PD FT+   LK
Sbjct: 113 VGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVE-PDNFTYPLALK 171

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  +  L   +E+H  V+ + +   + V   L+  YA  G ++ AR+VFD +  RD V 
Sbjct: 172 ACAALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVV 231

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNS+I+ Y Q    +EAL L   M    VG    TLV  +S+ A   AL  G  LH    
Sbjct: 232 WNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGW 291

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             GF     +  +LVDMYAK G +  A  +F ++ KR+++SWN+MI GYG+HG  DEA+ 
Sbjct: 292 RRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALK 351

Query: 278 FFKQM-LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
            F +M + A   PD+ITF+G+L  C+H G+V+E  E+F +MV  Y++KP ++H+ CLVD+
Sbjct: 352 LFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDV 411

Query: 337 YGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            G AG+ E+A ++I       D  +W  LL  CKIH+NVE+GE+A++ L++LE   AG+Y
Sbjct: 412 LGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNY 471

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ IYA +   E  AR RKL+ + G+K   G SWIE+  + H F+V D SHP +  IY
Sbjct: 472 VLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIY 531

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
            +LE +       GY  D   + V     +D        HSE+LAIAFGL +TP GT L 
Sbjct: 532 EELERLEGLMSDAGYMPDT--MPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLL 589

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + KNLR            S    R++I+RD  RYHHF +G CSC DYW
Sbjct: 590 VTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 160/323 (49%), Gaps = 4/323 (1%)

Query: 85  SRPDTFT-FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
           S P+++  +T  L++C   ++L   ++LHG ++ SG     V++T L+  YAA G++  A
Sbjct: 57  SSPNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHA 116

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           R +FD MP+R++  WN +I  Y +   H  A++LY  M    V  D FT    L +CA +
Sbjct: 117 RRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAAL 176

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
             L  G  +H       + E ++V   LVDMYAKCG +D A  VF R+R RD + WNSMI
Sbjct: 177 LDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMI 236

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
             YG +GR  EA+S  + M   G  P   T +  +   +    +  G E  H    R   
Sbjct: 237 AAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRE-LHGFGWRRGF 295

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
               K    LVD+Y ++G ++ A  +       + V W  ++    +H + +   + + N
Sbjct: 296 DRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEA-LKLFN 354

Query: 384 LVQLEAASAGDYV-LLATIYACT 405
            +++EA    D +  +  + AC 
Sbjct: 355 KMRVEAQVTPDNITFVGVLSACN 377



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 5/172 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L++ YA   S  +  A++LF Q+   +  +WN++I  +       +A+  +N M + +  
Sbjct: 305 LVDMYA--KSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQV 362

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRS-GYERCVVVSTNLMRGYAANGVIEAAR 144
            PD  TF   L AC     + + +E  G ++     +  V   T L+      G  E A 
Sbjct: 363 TPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAY 422

Query: 145 SVFDNMP-ERDLVSWNSIIS-CYTQASFHLEALKLYERMRFEDVGLDGFTLV 194
            +   MP + D   W ++++ C    +  L  L L + +  E      + L+
Sbjct: 423 DLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLL 474


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 297/557 (53%), Gaps = 61/557 (10%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +FN + +    AW  LI  F Q     +++  +N M  A L   D F     +  C 
Sbjct: 324 AKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQM-RAELMTLDQFALATLISGCC 382

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               L   ++LH   ++SG  + VVVS +L+  YA    +++A S+F  M E+D+VSW S
Sbjct: 383 SRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTS 442

Query: 161 IISC-------------------------------YTQASFHLEALKLYERMRFE-DVGL 188
           +I+                                Y Q     + L++Y  M  E DV  
Sbjct: 443 MITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRP 502

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
           D  T V L   CA +GA  +G  +     ++G +    V NA++ MY+KCG +  A  VF
Sbjct: 503 DWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVF 562

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
             +  +D++SWN+MI GY  HG G +AI  F  +L  G  PD I+++ +L GCSH GLV+
Sbjct: 563 DFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQ 622

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLG 366
           EG  YF MM   +N+ PG++H+ C+VDL GRAG L +A ++I+   P  P   +W  LL 
Sbjct: 623 EGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLID-EMPMKPTAEVWGALLS 681

Query: 367 SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTT 426
           +CKIH N E+ E+A K++ +L++  +G Y+L+A IYA     +  A+ RKL++  GIK  
Sbjct: 682 ACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKN 741

Query: 427 PGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSED 486
           PG+SW+E+ N+VH F  DD SHP    I +KL+E+M +   +GY + +S           
Sbjct: 742 PGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYVRTDS----------- 790

Query: 487 FLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDR 534
              +S  +HSEKLA+AFGL + P    + I+KNLR            S    R+ ++RD 
Sbjct: 791 --PRSEIHHSEKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDA 848

Query: 535 VRYHHFRDGLCSCGDYW 551
           VR+HHF  G CSCGDYW
Sbjct: 849 VRFHHFNGGSCSCGDYW 865



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 156/288 (54%), Gaps = 5/288 (1%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           + +A  LF+ +      +WN ++ A +QS    +A+     M    + R D+ T+T +L 
Sbjct: 220 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV-RLDSTTYTSSLT 278

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC R+ +L   ++LH  VIR+       V++ L+  YA  G  + A+ VF+++ +R+ V+
Sbjct: 279 ACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVA 338

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W  +I+ + Q     E+++L+ +MR E + LD F L  L+S C     L +G  LH +  
Sbjct: 339 WTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCL 398

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G +++V V N+L+ MYAKC NL SA  +F  M ++D++SW SMI  +   G   +A  
Sbjct: 399 KSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKARE 458

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           FF  M       + IT+  +L      G  E+G+  +++M+S  +++P
Sbjct: 459 FFDGMST----KNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRP 502



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 195/467 (41%), Gaps = 64/467 (13%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           G    AR + L      + I    +LN Y       LS A  LF ++      +WN+L+ 
Sbjct: 53  GALPDARRLLLTDIAHPNVITHNVMLNGYV--KLGRLSDAVELFGRMPARDVASWNTLMS 110

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG-- 119
            + QS   L ++  +  M  +  S P+ FTF + +K+C  +   +   +L G V + G  
Sbjct: 111 GYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQ 170

Query: 120 ------------YERCVVVS-----------------TNLMRGYAANGVIEAARSVFDNM 150
                       + RC  V                   +++ GY     ++ A  +FD+M
Sbjct: 171 DDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSM 230

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           PERD+VSWN ++S  +Q+    EAL +   M+ + V LD  T    L++CA + +L  G 
Sbjct: 231 PERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGK 290

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            LH            YV +ALV++YAKCG    A  VF+ +  R+ ++W  +I G+  HG
Sbjct: 291 QLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHG 350

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCS-----------HQGLVEEG----VEYFH 315
              E++  F QM       D      L+ GC            H   ++ G    V   +
Sbjct: 351 CFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSN 410

Query: 316 MMVSRY----NLKPG-----------IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
            ++S Y    NL+             I  +  ++  + + G + KA E  +  S  + + 
Sbjct: 411 SLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVIT 470

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407
           W  +LG+   H   E G + M N++  E     D+V   T++    D
Sbjct: 471 WNAMLGAYIQHGAEEDG-LRMYNVMLSEKDVRPDWVTYVTLFKGCAD 516



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 150/382 (39%), Gaps = 70/382 (18%)

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR---- 144
           T  F   L++C    AL   + LHG ++  G    V +   L+  Y + G +  AR    
Sbjct: 4   TQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLL 63

Query: 145 ----------------------------SVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
                                        +F  MP RD+ SWN+++S Y Q+  +L +L+
Sbjct: 64  TDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLE 123

Query: 177 LYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
            +  M R  D   + FT    + SC  +G  ++ + L  +  + G  +   V  ALVDM+
Sbjct: 124 SFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMF 183

Query: 236 AKCGNLDSA------------FC-------------------VFSRMRKRDVLSWNSMIV 264
            +CG +D A            FC                   +F  M +RDV+SWN M+ 
Sbjct: 184 VRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVS 243

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
                GR  EA+     M   G   DS T+   L  C+    +  G +  H  V R NL 
Sbjct: 244 ALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWG-KQLHAQVIR-NL- 300

Query: 325 PGIKHY--GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           P I  Y    LV+LY + G  ++A  V N+    + V W  L+     H       + + 
Sbjct: 301 PCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQH-GCFTESVELF 359

Query: 383 NLVQLEAASAGDYVLLATIYAC 404
           N ++ E  +   + L   I  C
Sbjct: 360 NQMRAELMTLDQFALATLISGC 381



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 8/256 (3%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           W     A S   +++ A+  F+ +       WN+++ A+ Q  +    +  YN ML    
Sbjct: 440 WTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKD 499

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
            RPD  T+    K C  + A     ++ G  ++ G      V+  ++  Y+  G I  AR
Sbjct: 500 VRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEAR 559

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VFD +  +D+VSWN++I+ Y+Q     +A+++++ +       D  + V +LS C+H G
Sbjct: 560 KVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSG 619

Query: 205 ALNMGIFLHRIACEMGFVESVYVG----NALVDMYAKCGNLDSAFCVFSRMRKRDVLS-W 259
            +  G     +   M  V ++  G    + +VD+  + G+L  A  +   M  +     W
Sbjct: 620 LVQEGKSYFDM---MKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVW 676

Query: 260 NSMIVGYGVHGRGDEA 275
            +++    +HG  + A
Sbjct: 677 GALLSACKIHGNNELA 692


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 201/547 (36%), Positives = 303/547 (55%), Gaps = 27/547 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA     SL YA+ +F+ +       W++LI  F       QA   +  ML  
Sbjct: 276 GTALLDMYA--KCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ 333

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            L      +    L+AC  +  L   ++LH  + +SG    +    +L+  YA  G+I+ 
Sbjct: 334 GLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQ 393

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A ++FD M  +D VS+++++S Y Q     EA  ++++M+  +V  D  T+V L+ +C+H
Sbjct: 394 AIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSH 453

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL  G   H      G      + NAL+DMYAKCG +D +  VF+ M  RD++SWN+M
Sbjct: 454 LAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTM 513

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I GYG+HG G EA + F +M   GF PD +TF+ LL  CSH GLV EG  +FH+M   Y 
Sbjct: 514 IAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYG 573

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIA 380
           L P ++HY C+VDL  R G L++A E I  S P  +D  +W  LLG+C++++N+++G+  
Sbjct: 574 LTPRMEHYICMVDLLSRGGFLDEAYEFIQ-SMPLRADVRVWVALLGACRVYKNIDLGKKV 632

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + + +L     G++VLL+ IY+     +  A  R + K  G K +PG SWIEI   +H 
Sbjct: 633 SRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHA 692

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY----HS 496
           FV  D+SHP +  IYR+L+ I+   K +GY  D S V       +D  E+        HS
Sbjct: 693 FVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVL------QDLEEEEKEKALICHS 746

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           EKLAIA+G+ +  +  ++ + KNLR            S+   R +IVRD  R+HHF++G 
Sbjct: 747 EKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQ 806

Query: 545 CSCGDYW 551
           CSCGD+W
Sbjct: 807 CSCGDFW 813



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 174/349 (49%), Gaps = 23/349 (6%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQA---IFYYNHMLMASLSRPDTFT 91
           S  LS A  LF+QI +P  + +N LIRA++ S SP  A   +  Y  ML   ++ P+ +T
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSS-SPTAAADGLHLYRRMLRHRVA-PNNYT 127

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           F F LKAC  +   +  + +H   I +G +  + VST L+  Y     +  A  +F  MP
Sbjct: 128 FPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMP 187

Query: 152 ERDLVSWNSIISCYTQASFHLEALK--LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
            RDLV+WN++++ Y     +  A+   L  +M+   +  +  TLV LL   A  GAL  G
Sbjct: 188 ARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG 247

Query: 210 IFLHRI---AC-------EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
             +H     AC       +    + V +G AL+DMYAKCG+L  A  VF  M  R+ ++W
Sbjct: 248 TSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTW 307

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAG---FHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           +++I G+ +  R  +A   FK ML  G     P SI     L  C+    +  G E  H 
Sbjct: 308 SALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMG-EQLHA 364

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           ++++  +   +     L+ +Y +AG +++A+ + +  +  D V +  L+
Sbjct: 365 LLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 413



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 129/293 (44%), Gaps = 13/293 (4%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P +F F +   A  R+ +   C                      ++ + A+G +  A  +
Sbjct: 20  PPSFHFHWRHHAARRLSSTTACLHPPPLQPPRASASASASLLLQLQDHIASGHLSRAHHL 79

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEA--LKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           FD +P  D+ ++N +I  Y+ +S    A  L LY RM    V  + +T    L +C+ + 
Sbjct: 80  FDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSALA 139

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
             + G  +HR A   G    ++V  AL+DMY KC  L  A  +F+ M  RD+++WN+M+ 
Sbjct: 140 DHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLA 199

Query: 265 GYGVHGRGDEAISFF--KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV---- 318
           GY  HG    A++     QM M    P++ T + LL   + QG + +G       +    
Sbjct: 200 GYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACL 259

Query: 319 -----SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
                S+  L  G+     L+D+Y + G L  A  V +     + V W  L+G
Sbjct: 260 HPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIG 312


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 199/527 (37%), Positives = 304/527 (57%), Gaps = 22/527 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+L+F+ +      +WN++I  +  S   +QA+  ++ M     +    FT + T+ AC 
Sbjct: 111 ARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREG-THMSEFTLSSTICACA 169

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
              A+N+C++LH   ++   +    V T ++  YA   +I+ A  VF+ MPER LV+W+S
Sbjct: 170 AKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSS 229

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           + + Y Q   H EAL L+   + E V L  FTL  +LS+CA +     GI LH +  + G
Sbjct: 230 LFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCG 289

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F  + +V  +LVD+YA+CG ++ A+ +F+ M  ++V+ WN+MI  +  H    EA+  F+
Sbjct: 290 FHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFE 349

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M   G  P+ +T+L +L  CSH GLVE+G  YF +++S   ++P + HY C+VD+ GR+
Sbjct: 350 KMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRS 409

Query: 341 GKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           GK ++A E++N   P +P   +W +LLGSC+ + N+ +  IA + L QLE  + G++VLL
Sbjct: 410 GKTDEAWELLN-KMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLL 468

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + +YA + + E V   RK +K +G K   G SWIE   +VH FVV ++ HP    IY KL
Sbjct: 469 SNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKL 528

Query: 459 EEIMHRA-KFIGYTKDE-SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
           EEI H   KF   T  E  L  V     E+ L+    +HSEKLA++FGL + P    + I
Sbjct: 529 EEIYHEMRKFARRTSIECDLHDVHAEQKEELLK----HHSEKLALSFGLISLPSNIPIII 584

Query: 517 VKNLR---------SIA---YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            KNLR          IA     R +IVRD  R+HHF+DG CSCGD+W
Sbjct: 585 HKNLRICGDCHSFMKIAAHITERLVIVRDTNRFHHFKDGSCSCGDFW 631



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 146/300 (48%), Gaps = 1/300 (0%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D    +  L+ C + K+L   +  HG  I  G     +    L+  Y   G  + AR VF
Sbjct: 56  DVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVF 115

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D M  R +VSWN++I+ YT +   ++ALKL+ RM  E   +  FTL   + +CA   A+N
Sbjct: 116 DIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAIN 175

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
               LH IA ++    + +VG A++D+YAKC  +  A  VF +M +R +++W+S+  GY 
Sbjct: 176 ECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYV 235

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +G  +EA+  F+     G      T   +L  C+   L  EG++  H ++ +       
Sbjct: 236 QNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQ-LHAVILKCGFHGNF 294

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
                LVD+Y R G++EKA  +       + V+W  ++ S   H +     I  + + QL
Sbjct: 295 FVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQL 354



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 2/234 (0%)

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
           H  +LK     R +   +D   +   L  CA   +L +G   H +A   G V      N 
Sbjct: 38  HSSSLKDRRLARIDRNLIDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNI 97

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           L+++Y KCG  D A  VF  M  R ++SWN+MI GY   G   +A+  F +M   G H  
Sbjct: 98  LINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMS 157

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
             T    +C C+ +  + E  +  H +  +  L         ++D+Y +   ++ A  V 
Sbjct: 158 EFTLSSTICACAAKYAINE-CKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVF 216

Query: 351 NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
                   V W +L     +   +    + +    Q E     ++ L A + AC
Sbjct: 217 EKMPERTLVTWSSLFAG-YVQNGLHEEALHLFRCAQREGVELTEFTLSAILSAC 269


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 197/529 (37%), Positives = 294/529 (55%), Gaps = 19/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A+++F+++      +WN++I  +A++     A   ++ M  A L   D  T    L 
Sbjct: 212 MGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLF-ADCTTLLGLLS 270

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTN-LMRGYAANGVIEAARSVFDNMPERDLV 156
           AC  +KA+ + + +HG+ +R+         TN L+  Y     +  AR +F+ +  +D V
Sbjct: 271 ACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTV 330

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWNS+I  Y +     E+L+L+ RM  +  G D  T + +L +C  + AL  G+ +H   
Sbjct: 331 SWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYL 390

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF  +  VG ALVDMY+KCG+L  +  VF  M  + ++SW++M+ GYG+HGRG EAI
Sbjct: 391 VKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAI 450

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           S    M      PD+  F  +L  CSH GLV EG E F+ M   YN+KP + HY C+VDL
Sbjct: 451 SILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDL 510

Query: 337 YGRAGKLEKALEVINTS--SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG L++A  +I T    P+  + W  LL + ++H+N+++ EI+ + +  +       
Sbjct: 511 LGRAGHLDEAYVIIRTMEIKPTSDI-WAALLTASRLHKNIKLAEISAQKVFDMNPKVVSS 569

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           Y+ L+ IYA  K  + V R R +++  G+K +PG S+IE+ N VH+F+V DKSH   + I
Sbjct: 570 YICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDI 629

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y KL E+  + K  GY  D SLV       E+  EK    HSE+LAIAF L  T  GT +
Sbjct: 630 YAKLNELKQQLKEAGYKPDTSLVFY--DVEEEVKEKMLWDHSERLAIAFALINTGPGTVI 687

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI KNLR            S    R++I+RD  R+HHF  G CSCGDYW
Sbjct: 688 RITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 171/339 (50%), Gaps = 11/339 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +S A+++F+ I    +  WN +IR +A +  P++++  Y  ML     R D FT+ F LK
Sbjct: 111 MSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFG-QRADNFTYPFVLK 169

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  +  +   + +H  V+  G E  + V  +L+  YA  G +  AR VFD M ERDL S
Sbjct: 170 ACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTS 229

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++IS Y + +    A  +++ M    +  D  TL+ LLS+CA + A+  G  +H  A 
Sbjct: 230 WNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAV 289

Query: 218 EMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                  + +  N+L++MY  C  +  A  +F R+R +D +SWNSMI+GY  +G   E++
Sbjct: 290 RNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESL 349

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY----GC 332
             F++M + G  PD +TF+ +L  C     +  G     M +  Y +K G          
Sbjct: 350 RLFRRMALDGSGPDQVTFIAVLGACDQIAALRYG-----MSIHSYLVKKGFDANTIVGTA 404

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           LVD+Y + G L  +  V +       V W  ++    +H
Sbjct: 405 LVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLH 443



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 129/276 (46%), Gaps = 11/276 (3%)

Query: 96  LKACERVKALNKCQELHGFVIR-SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           L++    K+  + Q+LH  +I  S  E    ++T L   YA  G++  A  +FD +  ++
Sbjct: 66  LQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKN 125

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
              WN +I  Y      +++L LY  M       D FT   +L +C  +  + +G  +H 
Sbjct: 126 SFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHS 185

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                G    +YVGN+L+ MYAK G++ +A  VF RM +RD+ SWN+MI GY  +     
Sbjct: 186 EVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGT 245

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY---- 330
           A   F  M  AG   D  T LGLL  C+    V+EG      ++  Y ++  I +Y    
Sbjct: 246 AFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEG-----KVIHGYAVRNSIGNYNKFF 300

Query: 331 -GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
              L+++Y     +  A  +       D V W +++
Sbjct: 301 TNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMI 336


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 201/547 (36%), Positives = 303/547 (55%), Gaps = 27/547 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA     SL YA+ +F+ +       W++LI  F       QA   +  ML  
Sbjct: 276 GTALLDMYA--KCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ 333

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            L      +    L+AC  +  L   ++LH  + +SG    +    +L+  YA  G+I+ 
Sbjct: 334 GLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQ 393

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A ++FD M  +D VS+++++S Y Q     EA  ++++M+  +V  D  T+V L+ +C+H
Sbjct: 394 AIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSH 453

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL  G   H      G      + NAL+DMYAKCG +D +  VF+ M  RD++SWN+M
Sbjct: 454 LAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTM 513

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I GYG+HG G EA + F +M   GF PD +TF+ LL  CSH GLV EG  +FH+M   Y 
Sbjct: 514 IAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYG 573

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIA 380
           L P ++HY C+VDL  R G L++A E I  S P  +D  +W  LLG+C++++N+++G+  
Sbjct: 574 LTPRMEHYICMVDLLSRGGFLDEAYEFIQ-SMPLRADVRVWVALLGACRVYKNIDLGKKV 632

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + + +L     G++VLL+ IY+     +  A  R + K  G K +PG SWIEI   +H 
Sbjct: 633 SRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHA 692

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY----HS 496
           FV  D+SHP +  IYR+L+ I+   K +GY  D S V       +D  E+        HS
Sbjct: 693 FVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVL------QDLEEEEKEKALICHS 746

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           EKLAIA+G+ +  +  ++ + KNLR            S+   R +IVRD  R+HHF++G 
Sbjct: 747 EKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQ 806

Query: 545 CSCGDYW 551
           CSCGD+W
Sbjct: 807 CSCGDFW 813



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 176/349 (50%), Gaps = 23/349 (6%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQA---IFYYNHMLMASLSRPDTFT 91
           S  LS A  LF+QI +P  + +N LIRA++ S SP  A   +  Y  ML   ++ P+ +T
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSS-SPTAAADGLHLYRRMLRHRVA-PNNYT 127

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           F F LKAC  +   +  + +H   I +G +  + VST L+  Y     +  A  +F  MP
Sbjct: 128 FPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMP 187

Query: 152 ERDLVSWNSIISCYTQASFHLEALK--LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
            RDLV+WN++++ Y     +  A+   L  +M+   +  +  TLV LL   A  GAL  G
Sbjct: 188 ARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG 247

Query: 210 IFLH--RI-AC-------EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
             +H  RI AC       +    + V +G AL+DMYAKCG+L  A  VF  M  R+ ++W
Sbjct: 248 TSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTW 307

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAG---FHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           +++I G+ +  R  +A   FK ML  G     P SI     L  C+    +  G E  H 
Sbjct: 308 SALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMG-EQLHA 364

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           ++++  +   +     L+ +Y +AG +++A+ + +  +  D V +  L+
Sbjct: 365 LLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 413



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 129/293 (44%), Gaps = 13/293 (4%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P +F F +   A  R+ +   C                      ++ + A+G +  A  +
Sbjct: 20  PPSFHFHWRHHAARRLSSTTACLHPPPLQPPRASASASASLLLQLQDHIASGHLSRAHHL 79

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEA--LKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           FD +P  D+ ++N +I  Y+ +S    A  L LY RM    V  + +T    L +C+ + 
Sbjct: 80  FDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSALA 139

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
             + G  +HR A   G    ++V  AL+DMY KC  L  A  +F+ M  RD+++WN+M+ 
Sbjct: 140 DHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLA 199

Query: 265 GYGVHGRGDEAISFF--KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV---- 318
           GY  HG    A++     QM M    P++ T + LL   + QG + +G       +    
Sbjct: 200 GYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACL 259

Query: 319 -----SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
                S+  L  G+     L+D+Y + G L  A  V +     + V W  L+G
Sbjct: 260 HSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIG 312


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 193/528 (36%), Positives = 296/528 (56%), Gaps = 26/528 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           LS A+ LF++        W +++  + Q+    +A  +++ M        +  ++   + 
Sbjct: 251 LSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM-----PEKNEVSYNAMIA 305

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
              + K ++  +EL      S   R +     ++ GY   G I  AR  FD MP+RD VS
Sbjct: 306 GYVQTKKMDIAREL----FESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVS 361

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W +II+ Y Q+  + EAL ++  ++ +   L+  T  C LS+CA + AL +G  +H  A 
Sbjct: 362 WAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAV 421

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +MG+    +VGNAL+ MY KCG++D A   F  + ++DV+SWN+M+ GY  HG G +A++
Sbjct: 422 KMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALT 481

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+ M  AG  PD IT +G+L  CSH GL++ G EYF+ M   Y + P  KHY C++DL 
Sbjct: 482 VFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLL 541

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GRAG+LE+A ++I  + P  P    W  LLG+ +IH N E+GE A + + ++E  ++G Y
Sbjct: 542 GRAGRLEEAQDLIR-NMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMY 600

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ +YA +       + R  ++  G++  PG+SW+E+ N++H F V D SHP+ + IY
Sbjct: 601 VLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIY 660

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
             LEE+  + +  GY     LV       E   E    YHSEKLA+AFG+ T P G  +R
Sbjct: 661 AYLEELDLKMREEGYVSLTKLVLHDVEEEEK--EHMLKYHSEKLAVAFGILTIPGGRPIR 718

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++KNLR            S    R +I+RD  R+HHF +G CSCGDYW
Sbjct: 719 VMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 139/322 (43%), Gaps = 26/322 (8%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +FN +    + ++N++I  + ++     + F     L   +   D F++   L    R  
Sbjct: 71  VFNTMPRRSSVSYNAMISGYLRN-----SKFNLARNLFDQMPERDLFSWNVMLTGYVRNC 125

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L   + L   +     E+ VV   +L+ GYA NG ++ AR VFDNMPE++ +SWN +++
Sbjct: 126 RLGDARRLFDLMP----EKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLA 181

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y       EA  L+E     D+     +  CL+        L    +L     +   V 
Sbjct: 182 AYVHNGRIEEACLLFESKSDWDL----ISWNCLMGGFVRKKKLGDARWLF----DKMPVR 233

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
                N ++  YA+ G L  A  +F     RDV +W +M+ GY  +G  DEA +FF +M 
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
                 + +++  ++ G      ++   E F  M  R      I  +  ++  YG+ G +
Sbjct: 294 ----EKNEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITGYGQIGDI 344

Query: 344 EKALEVINTSSPSDPVLWRTLL 365
            +A +  +     D V W  ++
Sbjct: 345 AQARKFFDMMPQRDCVSWAAII 366



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 70/262 (26%)

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           + GL++ G EYF+ M   Y++ P  KHY C++DL GR  +LE+                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG---------------- 819

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
            LLG+ +IH N E+GE A +   ++   ++                 G+++ R +    G
Sbjct: 820 ALLGASRIHGNTELGEKAAQMFFKMGPQNS-----------------GISKMRDV----G 858

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           ++  PG+SW E+ N++H F V          + R+ E        IG+ ++  L      
Sbjct: 859 VQKVPGYSWFEVQNKIHTFSV-------GLFLSREREN-------IGFLEELDLKMRERE 904

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL-------------RSIAYSRDL 529
             ++   K   Y SE LA A G+ T P G   R++K                S    R +
Sbjct: 905 EEKERTLK---YLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLI 961

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
            +RD    H F + +CSCG+YW
Sbjct: 962 TLRDS---HRFNESICSCGEYW 980



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 48/229 (20%)

Query: 137 NGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCL 196
           NG  ++A  VF+ MP R  VS+N++IS Y + S    A  L+++M   D+    F+   +
Sbjct: 62  NGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDL----FSWNVM 117

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           L+                     G+V +  +G+A                +F  M ++DV
Sbjct: 118 LT---------------------GYVRNCRLGDARR--------------LFDLMPEKDV 142

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           +SWNS++ GY  +G  DEA   F  M       +SI++ GLL    H G +EE    F  
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAAYVHNGRIEEACLLFES 198

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             S ++L      + CL+  + R  KL  A  + +     D + W T++
Sbjct: 199 K-SDWDLIS----WNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMI 242



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 114/275 (41%), Gaps = 41/275 (14%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM------ 282
           N  +  + + G+ DSA  VF+ M +R  +S+N+MI GY  + + + A + F QM      
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLF 112

Query: 283 ----LMAGF-----------------HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
               ++ G+                   D +++  LL G +  G V+E  E F  M  + 
Sbjct: 113 SWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKN 172

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           ++      +  L+  Y   G++E+A  +  + S  D + W  L+G     R  ++G+   
Sbjct: 173 SIS-----WNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGG--FVRKKKLGDARW 225

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
                 +     D +   T+ +      G+++ R+L   +  +    W+ + +   V   
Sbjct: 226 ----LFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAM-VSGYVQNG 280

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
           ++D+      +M  +   E+ + A   GY + + +
Sbjct: 281 MLDEAKTFFDEMPEKN--EVSYNAMIAGYVQTKKM 313


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/539 (36%), Positives = 300/539 (55%), Gaps = 28/539 (5%)

Query: 32  ISVSSSLSYAQ---LLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD 88
           ++  + L YA+    LF+ + +    +WNSLI  F++ L      FY     M+   +P+
Sbjct: 81  VTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMKFEMSV--KPN 138

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
             T    + AC    AL+  + +HGF I+ G    V V+ +L+  Y  +G + +A  +F+
Sbjct: 139 EVTILSMISACN--GALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFE 196

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            +P+ + VSWNSII+         E +  + +MR   +  D  T++ LL +C H+G   +
Sbjct: 197 AIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKL 256

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
              +H +    GF   + +  AL+D YAK G L +++ VF+ +   D ++W +M+ GY  
Sbjct: 257 AESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAA 316

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           HG G EAI  F+ M   G  PD +TF  LL  CSH GLV EG  YF++M   Y ++P + 
Sbjct: 317 HGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVD 376

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           HY C+VDL GR G L  A EVI  + P +P   +W  LLG+C++H N+E+G+   ++L+ 
Sbjct: 377 HYSCMVDLLGRCGLLNDAYEVIQ-NMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLIN 435

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
           +E     +Y++L+ +Y+ ++  +  A+ R L+K  G+K TPG+S IE GN+ H F V D+
Sbjct: 436 MEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDR 495

Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFG 504
           SHP+ + IY KLEE++ + +  GY+     V   V     ED + K    HSEKLAIAFG
Sbjct: 496 SHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINK----HSEKLAIAFG 551

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L  + +G +L I KNLR            S+   R +I+RD  R+HHF DG CSC DYW
Sbjct: 552 LLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 154/319 (48%), Gaps = 9/319 (2%)

Query: 56  WNS--LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
           WNS  L   F QS +    + + +  L+   + P+       L A     +++ C+E+H 
Sbjct: 5   WNSSILYNFFIQSRTQYPLLLHRSFHLVRQCATPEAIVSAL-LIAVNSCPSISNCREIHA 63

Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
            V +S   R   +   L+  Y   G  E A  +FD+MP +DLVSWNS+IS +++   H+ 
Sbjct: 64  RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC-LHM- 121

Query: 174 ALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           +L  +  M+FE  V  +  T++ ++S+C   GAL+ G ++H    ++G    V V N+L+
Sbjct: 122 SLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKYIHGFGIKVGGTLEVKVANSLI 179

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           +MY K G+L SA  +F  +   + +SWNS+I     +G   E I +F +M   G   D  
Sbjct: 180 NMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEG 239

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           T L LL  C H G V +  E  H ++        I     L+D Y + G+L  +  V   
Sbjct: 240 TILALLQACLHLG-VGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTE 298

Query: 353 SSPSDPVLWRTLLGSCKIH 371
              +D V W  +L     H
Sbjct: 299 VGFADRVAWTAMLAGYAAH 317


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/539 (36%), Positives = 300/539 (55%), Gaps = 28/539 (5%)

Query: 32  ISVSSSLSYAQ---LLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD 88
           ++  + L YA+    LF+ + +    +WNSLI  F++ L      FY     M+   +P+
Sbjct: 81  VTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMKFEMSV--KPN 138

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
             T    + AC    AL+  + +HGF I+ G    V V+ +L+  Y  +G + +A  +F+
Sbjct: 139 EVTILSMISACS--GALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFE 196

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            +P+ + VSWNSII+         E +  + +MR   +  D  T++ LL +C H+G   +
Sbjct: 197 AIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKL 256

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
              +H +    GF   + +  AL+D YAK G L +++ VF+ +   D ++W +M+ GY  
Sbjct: 257 AESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAA 316

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           HG G EAI  F+ M   G  PD +TF  LL  CSH GLV EG  YF++M   Y ++P + 
Sbjct: 317 HGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVD 376

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           HY C+VDL GR G L  A EVI  + P +P   +W  LLG+C++H N+E+G+   ++L+ 
Sbjct: 377 HYSCMVDLLGRCGLLNDAYEVIQ-NMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLIN 435

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
           +E     +Y++L+ +Y+ ++  +  A+ R L+K  G+K TPG+S IE GN+ H F V D+
Sbjct: 436 MEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDR 495

Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFG 504
           SHP+ + IY KLEE++ + +  GY+     V   V     ED + K    HSEKLAIAFG
Sbjct: 496 SHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINK----HSEKLAIAFG 551

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L  + +G +L I KNLR            S+   R +I+RD  R+HHF DG CSC DYW
Sbjct: 552 LLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 155/319 (48%), Gaps = 9/319 (2%)

Query: 56  WNS--LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
           WNS  L   F QS +    + + +  L+   + P+       L A     +++ C+E+H 
Sbjct: 5   WNSSILYNFFIQSRTQYPLLLHRSFHLVRQCATPEAIVSAL-LIAVNSCPSISNCREIHA 63

Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
            V +S   R   +   L+  Y   G  E A  +FD+MP +DLVSWNS+IS +++   H+ 
Sbjct: 64  RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC-LHM- 121

Query: 174 ALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           +L  +  M+FE  V  +  T++ ++S+C+  GAL+ G ++H    ++G    V V N+L+
Sbjct: 122 SLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGFGIKVGGTLEVKVANSLI 179

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           +MY K G+L SA  +F  +   + +SWNS+I     +G   E I +F +M   G   D  
Sbjct: 180 NMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEG 239

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           T L LL  C H G V +  E  H ++        I     L+D Y + G+L  +  V   
Sbjct: 240 TILALLQACLHLG-VGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTE 298

Query: 353 SSPSDPVLWRTLLGSCKIH 371
              +D V W  +L     H
Sbjct: 299 VGFADRVAWTAMLAGYAAH 317


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 201/530 (37%), Positives = 305/530 (57%), Gaps = 40/530 (7%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           W+++I  +AQ     +A+  +  M++   S P++ T    L AC  + AL++  E+H + 
Sbjct: 363 WSAVIAGYAQRGCSQEALDAFQQMILDG-SEPNSVTIISLLSACASLGALSQGMEIHAYS 421

Query: 116 IRS------------GYERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSI 161
           ++             G    ++V   L+  Y+     +AARS+FD++P  ER++V+W  +
Sbjct: 422 LKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVM 481

Query: 162 ISCYTQASFHLEALKLYERM--RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR-IACE 218
           I  Y Q     +ALK++  M  +   V  + +T+ C+L +CAH+ AL MG  +H  +   
Sbjct: 482 IGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRH 541

Query: 219 MGFVESVY-VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             +  SVY V N L+DMY+KCG++D+A  VF  M KR+ +SW SM+ GYG+HGRG EA+ 
Sbjct: 542 HEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALD 601

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M  AGF PD I+FL LL  CSH G+V++G+ YF +M   Y++    +HY C++DL 
Sbjct: 602 IFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLL 661

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            R G+L+KA + I    P +P  V+W  LL +C++H NVE+ E A+  LV ++A + G Y
Sbjct: 662 ARCGRLDKAWKTIQ-EMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSY 720

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
            L++ IYA  +  + VAR R+L+K +GIK  PG SW++       F V D+SHP +  IY
Sbjct: 721 TLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIY 780

Query: 456 RKLEEIMHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
             LE ++ R K +GY  +   +L  V      + L +    HSEKLA+A+GL TT  G  
Sbjct: 781 SLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSE----HSEKLALAYGLLTTSPGCP 836

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +RI KNLR            S     ++IVRD  R+HHF++G CSCG YW
Sbjct: 837 IRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 201/430 (46%), Gaps = 63/430 (14%)

Query: 37  SLSYAQLLFNQIQNPQTQ---AWNSLIRAFAQSLSPLQAIFYYNHMLM-----ASLSRPD 88
           SL  A L+F++I         +WNS++ A  +  +P  A+  ++ M M     A+  R D
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSD 258

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
             +    L AC  +KAL + +E+H + IR+G      V   L+  YA  G +  A  VF+
Sbjct: 259 IISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFN 318

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD------------------- 189
            M  +D+VSWN++++ YTQ+     A +L+E MR E++ LD                   
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQE 378

Query: 190 ----------------GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE---------- 223
                             T++ LLS+CA +GAL+ G+ +H  + +   +           
Sbjct: 379 ALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGD 438

Query: 224 --SVYVGNALVDMYAKCGNLDSAFCVFSRM--RKRDVLSWNSMIVGYGVHGRGDEAISFF 279
              + V NAL+DMY+KC +  +A  +F  +  R+R+V++W  MI GY  +G  ++A+  F
Sbjct: 439 GEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIF 498

Query: 280 KQMLMAGF--HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG-CLVDL 336
            +M+   +   P++ T   +L  C+H   +  G +    +   +  +P +     CL+D+
Sbjct: 499 SEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDM 558

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEIAMKNLVQLEAASAGDY 395
           Y + G ++ A  V ++    + V W +++    +H R  E  +I  K  +Q       D 
Sbjct: 559 YSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDK--MQKAGFVPDDI 616

Query: 396 VLLATIYACT 405
             L  +YAC+
Sbjct: 617 SFLVLLYACS 626



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 171/373 (45%), Gaps = 68/373 (18%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WN L+R   +     +AI     ML A  ++PD FT  + LKAC  + +    + LHG +
Sbjct: 117 WNLLVREHIKEGHLDRAIGVSCRMLRAG-TKPDHFTLPYALKACGELPSYCCGRALHGLI 175

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER---DLVSWNSIISCYTQASFHL 172
             +G+E  V V   L+  Y+  G +E A  VFD +  +   D++SWNSI++ + + S   
Sbjct: 176 CCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPR 235

Query: 173 EALKLYERM------RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
            AL+L+  M      +  +   D  ++V +L +CA + AL     +H  A   G     +
Sbjct: 236 TALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAF 295

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG---------------- 270
           V NAL+D YAKCG+++ A  VF+ M  +DV+SWN+M+ GY   G                
Sbjct: 296 VCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKEN 355

Query: 271 -----------------RG--DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
                            RG   EA+  F+QM++ G  P+S+T + LL  C+  G + +G+
Sbjct: 356 IPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGM 415

Query: 312 EYFHMMVSRYNLKPGIKH----------------YGCLVDLYGRAGKLEKALEVINT--S 353
           E     +  Y+LK  +                  Y  L+D+Y +    + A  + ++   
Sbjct: 416 E-----IHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPR 470

Query: 354 SPSDPVLWRTLLG 366
              + V W  ++G
Sbjct: 471 RERNVVTWTVMIG 483



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 10/249 (4%)

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           + T ++  Y A G  + A SV + +     V WN ++  + +      A+ +  RM    
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
              D FTL   L +C  + +   G  LH + C  GF  +V+V NALV MY++CG+L+ A 
Sbjct: 145 TKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDAS 204

Query: 246 CVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLM------AGFHPDSITFLG 296
            VF  + ++   DV+SWNS++  +        A+  F +M M           D I+ + 
Sbjct: 205 LVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVN 264

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
           +L  C+    + + ++  H    R            L+D Y + G +  A++V N     
Sbjct: 265 ILPACASLKALPQ-IKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK 323

Query: 357 DPVLWRTLL 365
           D V W  ++
Sbjct: 324 DVVSWNAMV 332



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 4/150 (2%)

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +V    +G  +V  Y  CG    A  V  R+     + WN ++  +   G  D AI    
Sbjct: 79  YVSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSC 138

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML AG  PD  T    L  C        G    H ++     +  +     LV +Y R 
Sbjct: 139 RMLRAGTKPDHFTLPYALKACGELPSYCCG-RALHGLICCNGFESNVFVCNALVAMYSRC 197

Query: 341 GKLEKA---LEVINTSSPSDPVLWRTLLGS 367
           G LE A    + I      D + W +++ +
Sbjct: 198 GSLEDASLVFDEITRKGIDDVISWNSIVAA 227


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 193/528 (36%), Positives = 296/528 (56%), Gaps = 26/528 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           LS A+ LF++        W +++  + Q+    +A  +++ M        +  ++   + 
Sbjct: 251 LSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM-----PEKNEVSYNAMIA 305

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
              + K ++  +EL      S   R +     ++ GY   G I  AR  FD MP+RD VS
Sbjct: 306 GYVQTKKMDIAREL----FESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVS 361

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W +II+ Y Q+  + EAL ++  ++ +   L+  T  C LS+CA + AL +G  +H  A 
Sbjct: 362 WAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAV 421

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +MG+    +VGNAL+ MY KCG++D A   F  + ++DV+SWN+M+ GY  HG G +A++
Sbjct: 422 KMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALT 481

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+ M  AG  PD IT +G+L  CSH GL++ G EYF+ M   Y + P  KHY C++DL 
Sbjct: 482 VFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLL 541

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GRAG+LE+A ++I  + P  P    W  LLG+ +IH N E+GE A + + ++E  ++G Y
Sbjct: 542 GRAGRLEEAQDLIR-NMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMY 600

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ +YA +       + R  ++  G++  PG+SW+E+ N++H F V D SHP+ + IY
Sbjct: 601 VLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIY 660

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
             LEE+  + +  GY     LV       E   E    YHSEKLA+AFG+ T P G  +R
Sbjct: 661 AYLEELDLKMREEGYVSLTKLVLHDVEEEEK--EHMLKYHSEKLAVAFGILTIPGGRPIR 718

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++KNLR            S    R +I+RD  R+HHF +G CSCGDYW
Sbjct: 719 VMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 139/322 (43%), Gaps = 26/322 (8%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +FN +    + ++N++I  + ++     + F     L   +   D F++   L    R  
Sbjct: 71  VFNTMPRRSSVSYNAMISGYLRN-----SKFNLARNLFDQMPERDLFSWNVMLTGYVRNC 125

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L   + L   +     E+ VV   +L+ GYA NG ++ AR VFDNMPE++ +SWN +++
Sbjct: 126 RLGDARRLFDLMP----EKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLA 181

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y       EA  L+E     D+     +  CL+        L    +L     +   V 
Sbjct: 182 AYVHNGRIEEACLLFESKSDWDL----ISWNCLMGGFVRKKKLGDARWLF----DKMPVR 233

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
                N ++  YA+ G L  A  +F     RDV +W +M+ GY  +G  DEA +FF +M 
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
                 + +++  ++ G      ++   E F  M  R      I  +  ++  YG+ G +
Sbjct: 294 ----EKNEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITGYGQIGDI 344

Query: 344 EKALEVINTSSPSDPVLWRTLL 365
            +A +  +     D V W  ++
Sbjct: 345 AQARKFFDMMPQRDCVSWAAII 366



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 48/229 (20%)

Query: 137 NGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCL 196
           NG  ++A  VF+ MP R  VS+N++IS Y + S    A  L+++M   D+    F+   +
Sbjct: 62  NGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDL----FSWNVM 117

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           L+                     G+V +  +G+A                +F  M ++DV
Sbjct: 118 LT---------------------GYVRNCRLGDARR--------------LFDLMPEKDV 142

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           +SWNS++ GY  +G  DEA   F  M       +SI++ GLL    H G +EE    F  
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAAYVHNGRIEEACLLFES 198

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             S ++L      + CL+  + R  KL  A  + +     D + W T++
Sbjct: 199 K-SDWDLIS----WNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMI 242



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 114/275 (41%), Gaps = 41/275 (14%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM------ 282
           N  +  + + G+ DSA  VF+ M +R  +S+N+MI GY  + + + A + F QM      
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLF 112

Query: 283 ----LMAGF-----------------HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
               ++ G+                   D +++  LL G +  G V+E  E F  M  + 
Sbjct: 113 SWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKN 172

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           ++      +  L+  Y   G++E+A  +  + S  D + W  L+G     R  ++G+   
Sbjct: 173 SIS-----WNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGG--FVRKKKLGDARW 225

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
                 +     D +   T+ +      G+++ R+L   +  +    W+ + +   V   
Sbjct: 226 ----LFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAM-VSGYVQNG 280

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
           ++D+      +M  +   E+ + A   GY + + +
Sbjct: 281 MLDEAKTFFDEMPEKN--EVSYNAMIAGYVQTKKM 313


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 210/591 (35%), Positives = 315/591 (53%), Gaps = 50/591 (8%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQA--WNS 58
           +G + HA YV  +    A+      L++ YA      +  A+ +F+ +     Q   WN+
Sbjct: 289 LGREMHA-YVLKDSDLAANSFVASALVDMYA--SHERVGVARRVFDMVPGGHRQLGLWNA 345

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           ++  +AQ+    +A+  +  M   +   P   T    L AC R +     + +HG+V++ 
Sbjct: 346 MVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKR 405

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS-CYTQASFHLEALKL 177
           G      V   LM  YA  G +EAAR +F  +  RD+VSWN++I+ C  Q   H +A +L
Sbjct: 406 GMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIH-DAFQL 464

Query: 178 YERM----RFEDV----GLDG----------FTLVCLLSSCAHVGALNMGIFLHRIACEM 219
              M    RF D     G+ G           TL+ LL  CA + A   G  +H  A   
Sbjct: 465 VREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRH 524

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
                + VG+ALVDMYAKCG L  +  VF R+ KR+V++WN +I+ YG+HG GDEAI+ F
Sbjct: 525 ALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALF 584

Query: 280 KQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
            +M+M+    P+ +TF+  L  CSH G+V+ G+E FH M   + ++P    + C VD+ G
Sbjct: 585 DRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILG 644

Query: 339 RAGKLEKALEVINTSSPSDPVL--WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           RAG+L++A  +I +  P +  +  W + LG+C++HRNV +GEIA + L QLE   A  YV
Sbjct: 645 RAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYV 704

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL  IY+     E  +  R  ++  G+   PG SWIE+   +H+F+  + +HP++ +++ 
Sbjct: 705 LLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHA 764

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA----YHSEKLAIAFGLATTPDGT 512
            ++ +  R +  GYT D S      S   D  E   A    YHSEKLAIAFGL  TP G 
Sbjct: 765 HMDALWERMRNQGYTPDTS------SVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGA 818

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++R+ KNLR            S    R++++RD  R+HHF DG CSCGDYW
Sbjct: 819 TIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 193/417 (46%), Gaps = 32/417 (7%)

Query: 41  AQLLFNQIQNPQTQA-----WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           AQ+LF  +    +       WN+++    QS    +AI     M+   + RPD  TF   
Sbjct: 219 AQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGV-RPDGITFASA 277

Query: 96  LKACERVKALNKCQELHGFVIR-SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP--E 152
           L AC +++ L+  +E+H +V++ S       V++ L+  YA++  +  AR VFD +P   
Sbjct: 278 LPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGH 337

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIF 211
           R L  WN+++  Y QA    EAL+L+ RM  E  V     T+  +L +CA          
Sbjct: 338 RQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEA 397

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H    + G  ++ +V NAL+D+YA+ G++++A  +F+ +  RDV+SWN++I G  V G 
Sbjct: 398 VHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGH 457

Query: 272 GDEAISFFKQMLMAG------------------FHPDSITFLGLLCGCSHQGLVEEGVEY 313
             +A    ++M   G                    P+++T + LL GC+      +G E 
Sbjct: 458 IHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKE- 516

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRN 373
            H    R+ L   I     LVD+Y + G L  +  V +     + + W  L+ +  +H  
Sbjct: 517 IHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGL 576

Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTTP 427
            +        +V    A   +   +A + AC+     + G+     + +++G++ TP
Sbjct: 577 GDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTP 633



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 128/276 (46%), Gaps = 13/276 (4%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSG--YERCVVVSTNLMRGYAANGVIEAARS 145
           D F      K+   +++L   + +HG  +R    +     V+  L+  YA  G + AA +
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F+ MP RD V++NS+I+        L AL     M  E   L  FTLV +L +C+H+  
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAE 177

Query: 206 -LNMGIFLHRIACEMGFV--ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD-----VL 257
            L +G   H  A + GF+  +  +  NAL+ MYA+ G +D A  +F  +   D     V+
Sbjct: 178 DLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVV 237

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +WN+M+      GR  EAI     M+  G  PD ITF   L  CS   ++  G E    +
Sbjct: 238 TWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYV 297

Query: 318 VSRYNLKPGIKHYGCLVDLYG---RAGKLEKALEVI 350
           +   +L         LVD+Y    R G   +  +++
Sbjct: 298 LKDSDLAANSFVASALVDMYASHERVGVARRVFDMV 333



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           GF  +V   NAL+  YA+CG+L +A  +F+ M  RD +++NS+I    +  R   A+   
Sbjct: 93  GFTPAV--ANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDAL 150

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEE---GVEYFHMMVSRYNLKPGIKHYG--CLV 334
           + ML+ G    S T + +L  CSH  L E+   G E  H    +     G + +    L+
Sbjct: 151 RDMLLEGHPLSSFTLVSVLLACSH--LAEDLRLGREA-HAFALKNGFLDGDERFAFNALL 207

Query: 335 DLYGRAGKLEKAL----EVINTSSPSDPVL-WRTLL 365
            +Y R G ++ A      V  T SP   V+ W T++
Sbjct: 208 SMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMV 243


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 192/533 (36%), Positives = 302/533 (56%), Gaps = 18/533 (3%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S S  L+ A  +F +I       W +L   +  +    +AI  +  M+   + RPD++  
Sbjct: 157 SGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGV-RPDSYFI 215

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              L AC  V  L+  + +   +     ++   V T L+  YA  G +E ARSVFD+M E
Sbjct: 216 VQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGE 275

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           +D+V+W+++I  Y   SF  E ++ + +M  E++  D F++V  LSSCA +GAL++G + 
Sbjct: 276 KDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWG 335

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
             +     F+ ++++ NAL+DMYAKCG +   F VF  M+++D++  N+ I G   +G  
Sbjct: 336 ISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHV 395

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
             + + F Q    G  PD  TFLGLLCGC H GL+++G+ +F+ +   Y LK  ++HYGC
Sbjct: 396 KLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGC 455

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           +VDL+GRAG L+ A  +I    P  P  ++W  LL  C++ ++ ++ E  +K L+ LE  
Sbjct: 456 MVDLWGRAGMLDDAYRLI-CDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPW 514

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           +AG+YV L+ IY+ +   +  A  R ++   G+K  PG+SWIE+   VH+F+ DDKSHP 
Sbjct: 515 NAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPL 574

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
           +D IY KLE++ +  + +G+      V       E   E+   +HSEKLA+AFGL +T  
Sbjct: 575 SDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEK--ERVLGHHSEKLAVAFGLISTDH 632

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G  +R+VKNLR            S    R+++VRD  R+H F +G CSC DYW
Sbjct: 633 GQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 169/325 (52%), Gaps = 10/325 (3%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT----FTFTFT 95
           Y+ LLF+  Q P    +N+LI  F  +      +F+    L  S+ +       FTF   
Sbjct: 63  YSFLLFSHTQFPNIFLYNTLINGFVNN-----HLFHETLDLFLSIRKHGLNLHGFTFPLV 117

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LKAC R        +LH  V++ G+   V   T+L+  Y+ +G +  A  VF+ +PER +
Sbjct: 118 LKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSV 177

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           V+W ++ S YT A  H EA+ L+++M    V  D + +V +LS+C HVG L+ G ++ + 
Sbjct: 178 VTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKH 237

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             EM   ++ +V   LV++YAKCG ++ A  VF  M ++D+++W++MI GY  +    E 
Sbjct: 238 MEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEG 297

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           I FF QML     PD  + +G L  C+  G ++ G E+   ++ R+     +     L+D
Sbjct: 298 IEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALID 356

Query: 336 LYGRAGKLEKALEVINTSSPSDPVL 360
           +Y + G + +  EV       D V+
Sbjct: 357 MYAKCGAMARGFEVFKEMKEKDIVI 381


>gi|326532850|dbj|BAJ89270.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 204/524 (38%), Positives = 300/524 (57%), Gaps = 32/524 (6%)

Query: 53  TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP----DTFTFTFTLKACERVKALNKC 108
           T  +N+ +R  A S  P +++      L+ S S P    D  + +F LKA  R       
Sbjct: 64  TNDFNAALRGLAASPHPARSLLLLAGRLLPSPSPPRPRLDALSLSFALKASARCSDGPAT 123

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
            +LH  V+R G    V + T L+  YA    + +AR VFD M  RD+ SWN++++   Q 
Sbjct: 124 LQLHALVLRLGCTADVRLITTLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQG 183

Query: 169 SFHLEALKLYERM--RFEDV----GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           +    AL L+ R+   F+++      +  T++  LS+CA +G+L  G+ +H  A ++G  
Sbjct: 184 TEPSLALALFHRLVRSFQELPPREAPNVVTIIAALSACAQIGSLQDGLCVHEFARKIGVG 243

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD--VLSWNSMIVGYGVHGRGDEAISFFK 280
            +V V NAL+DMY+KCG+L  A  VF  +++ D  ++S+N+ I    +HG G +A+  F 
Sbjct: 244 GNVRVCNALIDMYSKCGSLARALEVFHSIKREDRTLVSYNTAIQAISMHGHGGDALKLFD 303

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M      PD +T++ +LCGC+H GLV+EG+  FH M     + P +KHYG +VDL GRA
Sbjct: 304 EMPTC-IEPDEVTYIAVLCGCNHAGLVDEGLRVFHGM----RVPPNVKHYGTVVDLLGRA 358

Query: 341 GKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+L +A + I +   P+D VLW+TLLG+ K H +VE+ E+A   L +L +   GDYVLL+
Sbjct: 359 GRLAEAYDTIKSMPFPADIVLWQTLLGASKTHGDVELAEVAATKLTELGSNVDGDYVLLS 418

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            +YA       V R R  ++SN ++  PG+S+ EI   +HKF+  DK HP    IYR L 
Sbjct: 419 NVYASKARWADVGRVRDTMRSNDVRKVPGFSYTEISGVMHKFINGDKEHPRLQEIYRALG 478

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           EIM R   +GY  + S   V     E+  + + +YHSEKLAIAFGL  TP G +LR++KN
Sbjct: 479 EIMSRIGELGYEPETS--NVLHDIGEEEKQYALSYHSEKLAIAFGLIATPPGETLRVIKN 536

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R            S AY R +I+RDR R+H F DG CSC DYW
Sbjct: 537 IRICGDCHVVAKLISKAYGRAIIIRDRARFHRFEDGQCSCSDYW 580


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 193/547 (35%), Positives = 293/547 (53%), Gaps = 35/547 (6%)

Query: 38  LSYAQLLFNQIQNPQTQ--AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           ++ A+ +F+ +  P  Q   WN++I  +AQ+    +A+  ++ M   +   P   T +  
Sbjct: 334 VASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGV 393

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L AC R +     + +HG+V++ G      V   LM  YA  G ++ AR +F  +  RD+
Sbjct: 394 LPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDV 453

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGL----------------DGFTLVCLLSS 199
           VSWN++I+         EA +L   M+                      +  TL+ LL  
Sbjct: 454 VSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPG 513

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           CA + A   G  +H  A        + VG+ALVDMYAKCG L ++  VF R+ +R+V++W
Sbjct: 514 CAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITW 573

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           N +I+ YG+HG GDEA++ F +M   G   P+ +TF+  L  CSH GLV+ G+E FH M 
Sbjct: 574 NVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGME 633

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL--WRTLLGSCKIHRNVEI 376
             + +KP    + C+VD+ GRAG+L++A  +I +  P +  +  W +LLG+C++HRNVE+
Sbjct: 634 RDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVEL 693

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
           GE+A + L +LE   A  YVLL  IY+     +     R  ++  G+   PG SWIE+  
Sbjct: 694 GEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDG 753

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHS 496
            +H+F+  + SHP +  ++  ++ +  R +  GY  D S V       ED       YHS
Sbjct: 754 AIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVL--HDVDEDEKAAMLRYHS 811

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           EKLAIAFGL   P G ++R+ KNLR            S    RD+++RD  R+HHFRDG 
Sbjct: 812 EKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGS 871

Query: 545 CSCGDYW 551
           CSCGDYW
Sbjct: 872 CSCGDYW 878



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 125/276 (45%), Gaps = 25/276 (9%)

Query: 153 RDLVSWNSIISC---YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN-- 207
           RD VS+NS+IS    + Q    L+AL+        DV    FTLV +L +C+H+   +  
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDV--SSFTLVSVLLACSHLPGDDGR 188

Query: 208 -MGIFLHRIACEMGFVES---VYVGNALVDMYAKCGNLDSAFCVFSRMRKR------DVL 257
            +G   H  A + GF++     +  NAL+ MYA+ G +D A  +F            DV+
Sbjct: 189 RLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVV 248

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +WN+MI      GR  EA+     M+  G  PD +TF   L  CS   ++  G E   ++
Sbjct: 249 TWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVV 308

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPV-LWRTLLGSCKIHRNVE 375
           +   +L         LVD+Y    K+  A  V +    PS  + +W  ++  C  +    
Sbjct: 309 LKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMI--CG-YAQAG 365

Query: 376 IGEIAMKNLVQLEAASA---GDYVLLATIYACTKDE 408
           + E A++   ++EA +     +  +   + AC + E
Sbjct: 366 MDEEALELFSRMEAEAGCAPSETTMSGVLPACARSE 401


>gi|357124741|ref|XP_003564056.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Brachypodium distachyon]
          Length = 594

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 209/541 (38%), Positives = 313/541 (57%), Gaps = 32/541 (5%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP----DTFT 91
           ++L +A L    + +P T  +N+ +R  A S  P +++      L+ S S P    D  +
Sbjct: 61  AALPHALLFLRSLPSPATNDFNAALRGLAASPHPARSLLLLAGRLLPSPSPPPPRLDALS 120

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
            +F LKA  R        +LH  ++R G    V + T L+  YA  G + +AR VFD M 
Sbjct: 121 LSFALKASARCSDGTATLQLHALLLRLGCTPDVRLITTLVDSYAKCGDLASARKVFDEMV 180

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERM--RFEDVGL----DGFTLVCLLSSCAHVGA 205
            RD+ SWN++++   Q +    AL L+ R+   F ++      +  T+V  LS+CA +G+
Sbjct: 181 VRDVASWNALLAGLAQGTEPTLALALFHRLVGSFRELPPREEPNEVTIVAALSACAQIGS 240

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD--VLSWNSMI 263
           L  G+++H  A ++G   +V V NAL+DMY+KCG+LD A  VF  +++ D  ++S+N+ I
Sbjct: 241 LQDGLYVHEFARKIGVNGNVRVCNALIDMYSKCGSLDLALEVFHSIKREDRTLVSYNTAI 300

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
               +HG G +A+  F +M      PD +T++ +LCGC+H GLV++G+  FH M     +
Sbjct: 301 QAVSMHGHGGDALRLFDEM-PTFIEPDEVTYIAVLCGCNHAGLVDDGLRVFHSM----RV 355

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
            P +KHYG +VDL GRAG+L +A + +++   P+D VLW+TLLG+ K H +VE+ E+A  
Sbjct: 356 LPNVKHYGAVVDLLGRAGRLAEAYDTIVSMPFPADIVLWQTLLGAAKTHGDVELAELAAT 415

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            L +L +   GDYVLL+ +YA       V R R  ++SN ++  PG+S+ EI   +HKF+
Sbjct: 416 KLDELGSNVDGDYVLLSNVYASKARWADVRRVRDTMRSNDVRKVPGFSYTEISGVMHKFI 475

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             DK HP    IYR LEEI+ R   +GY  + S   V     E+  + + +YHSEKLAIA
Sbjct: 476 NGDKEHPRWQEIYRALEEIVSRIGELGYEPETS--NVLHDIGEEEKQYALSYHSEKLAIA 533

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FGL  TP G +LR++KNLR            S AY R +I+RDR R+H F DG CSC DY
Sbjct: 534 FGLIATPPGETLRVIKNLRTCGDCHVVAKLISKAYGRVIIIRDRARFHQFEDGQCSCKDY 593

Query: 551 W 551
           W
Sbjct: 594 W 594


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 193/530 (36%), Positives = 308/530 (58%), Gaps = 20/530 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++ A+ LF++I      +WN++I  + ++ +  +A+  Y  M+  ++ +PD  T    + 
Sbjct: 147 INNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNV-KPDESTMVTVVS 205

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC +  ++   ++LH ++   G+   + +   L+  Y+  G +E A  +F  + ++D++S
Sbjct: 206 ACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVIS 265

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++I  +T  + + EAL L++ M       +  T++ +L +CAH+GA+++G ++H    
Sbjct: 266 WNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIN 325

Query: 218 E--MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           +   G   +  +  +L+DMYAKCG++++A  VF  M  R + SWN+MI G+ +HG+ + A
Sbjct: 326 KRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAA 385

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
              F +M   G  PD ITF+GLL  CSH G+++ G   F  M   Y + P ++HYGC++D
Sbjct: 386 FDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMID 445

Query: 336 LYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L G  G  ++A E+I T  P +P  V+W +LL +CK+H NVE+GE   +NL+++E  + G
Sbjct: 446 LLGHCGLFKEAKEMIRT-MPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPG 504

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            YVLL+ IYA     + VA+ R L+   GIK  PG S IEI + VH+F++ DK HP    
Sbjct: 505 SYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNRE 564

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           IYR LEE+    +  G+  D S   V     E++ E +  +HSEKLAIAFGL +T  GT 
Sbjct: 565 IYRMLEEMEMLMEETGFVPDTS--EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 622

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L IVKNLR            S  Y R++I RDR R H  +DG+ SC DYW
Sbjct: 623 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 198/369 (53%), Gaps = 39/369 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           LSYA  +F  IQ P    WN++ R  A +   + A+  Y  M+   L  P++++F F LK
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGL-LPNSYSFPFLLK 73

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           +C + KAL + Q++HG V++ GY+                               R VV 
Sbjct: 74  SCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVS 133

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L+ GYA+ G I  AR +FD +  +D+VSWN++IS Y +     EAL+LY+ M   +V
Sbjct: 134 YTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNV 193

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T+V ++S+CA  G++ +G  LH    + GF  ++ + N L+D+Y+KCG +++A  
Sbjct: 194 KPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACG 253

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F  + K+DV+SWN++I G+       EA+  F++ML +G  P+ +T L +L  C+H G 
Sbjct: 254 LFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGA 313

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYG----CLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           ++ G  + H+ +++  LK G+ +       L+D+Y + G +E A +V ++        W 
Sbjct: 314 IDIG-RWIHVYINK-RLK-GVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWN 370

Query: 363 TLLGSCKIH 371
            ++    +H
Sbjct: 371 AMIFGFAMH 379



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 27/221 (12%)

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           L  A  +F  +++ ++L WN+M  G+ ++     A+  +  M+  G  P+S +F  LL  
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 301 CSHQGLVEEGVE-YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
           C+    + EG + + H++   Y+L   +     L+ +Y + G+LE A +V + SS    V
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVN--TSLISMYAQNGRLEDAHKVFDRSSHRHVV 132

Query: 360 LWRTLL------GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
            +  L+      G     R +   EI++K++V   A  +G YV           +E +  
Sbjct: 133 SYTALITGYASRGYINNARKL-FDEISVKDVVSWNAMISG-YVETCNF------KEALEL 184

Query: 414 TRKLIKSN----------GIKTTPGWSWIEIGNQVHKFVVD 444
            + ++K+N           +        IE+G Q+H ++ D
Sbjct: 185 YKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIED 225


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/470 (40%), Positives = 280/470 (59%), Gaps = 21/470 (4%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           +  C +V  L+K   L      +  ER      +L+ G+  NG ++ AR +F  MPE+++
Sbjct: 215 INGCCKVGDLSKAASL----FEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNV 270

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW ++I+ ++Q   H +AL ++ RM  E V  +  T+V  L +C  +GAL +G  +H  
Sbjct: 271 VSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNY 330

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
               GF  +  +G ALVDMYAKCGN+ SA  VF   + +D+L+W+ MI G+ +HG  D+A
Sbjct: 331 LSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQA 390

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F +M  AG +PD + FL +L  CSH G V++G+ +F  M   Y+++P +KHY  +VD
Sbjct: 391 LQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVD 450

Query: 336 LYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L GRAG+L++AL  I  S P +P  V+W  L  +C+ H+N+E+ E+  + L+QLE    G
Sbjct: 451 LLGRAGRLDEALSFIQ-SMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPG 509

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            YV L+ +YA     E V R R L+K+ G++  PGWS+IE+  QVH FV  D +H  A+ 
Sbjct: 510 SYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEE 569

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           I  KLEEI   AK  GY  + + V  +    E   E +   HSEKLA+AFGL +T  G++
Sbjct: 570 ISLKLEEITASAKQEGYMPETAWVLHNIEEEEK--EDALGSHSEKLALAFGLISTAPGST 627

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +RIVKNLR            S    R++I+RD  R+HHF+DG CSCGDYW
Sbjct: 628 IRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 134/322 (41%), Gaps = 59/322 (18%)

Query: 130 LMRGYAANGVIEAARSVFDNM------PER-----DLVSWNSIISCYTQASFHLEALKLY 178
           L+RG A N   E + S F  M      P+R      L S  +++        H   +KL 
Sbjct: 109 LIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKL- 167

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
                  +  D F  V L+     +G L  G+ L   + +    ES+ + N L++   K 
Sbjct: 168 ------GLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKV 221

Query: 239 GNLDSAFCVFSRMRKRDVLSWNS-------------------------------MIVGYG 267
           G+L  A  +F  M +R+  SWNS                               MI G+ 
Sbjct: 222 GDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFS 281

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR--YNLKP 325
            +G  ++A+S F +ML  G  P+ +T +  L  C+  G ++ G E  H  +S   + L  
Sbjct: 282 QNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVG-ERIHNYLSSNGFQLNR 340

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
           GI     LVD+Y + G ++ A  V   +   D + W  ++    IH      + A++  V
Sbjct: 341 GIG--TALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCF---DQALQCFV 395

Query: 386 QLEAA--SAGDYVLLATIYACT 405
           ++++A  +  + + LA + AC+
Sbjct: 396 KMKSAGINPDEVIFLAILTACS 417


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 220/607 (36%), Positives = 317/607 (52%), Gaps = 78/607 (12%)

Query: 21  IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           I G+ LL+S A+SV  +L YA+ LF    NP     N+LIR  A+S +P  ++  +  M 
Sbjct: 39  IAGKLLLHS-AVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMR 97

Query: 81  MASLSRPDTFTFTFTLKACERVKALNK-----CQEL------HGFV---IRSGYERC--- 123
               +  D+F+F F LKA    ++L       CQ +      H FV   + S Y  C   
Sbjct: 98  RRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFV 157

Query: 124 -------------VVVSTN--------------------------------LMRGYAANG 138
                         VV+ N                                ++ GY   G
Sbjct: 158 AFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAG 217

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
            +E AR +F  MP +D VSW+++I  +    F  EA   +  ++   +  +  +L   LS
Sbjct: 218 ELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALS 277

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDVL 257
           +CA  GA+  G  LH    + GF+  V V NAL+D Y+KCGN+  A  VF RM  KR ++
Sbjct: 278 ACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIV 337

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           SW SMI G  +HG G+EAI  F +M  +G  PD I F+ +L  CSH GL+E+G EYF+ M
Sbjct: 338 SWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKM 397

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEI 376
              YN++P I+HYGC+VDLYGRAG+L+KA E +I+       ++WRTLLG+C IH NV++
Sbjct: 398 KDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKL 457

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
            E   + L +L+  ++GD+VLL+ IYA     + VA  R+ +    +  TPGWS IE+  
Sbjct: 458 AERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDK 517

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHS 496
            ++ FV  +  +   +  Y KL+EIM + +  G    E    +     E+  E S + HS
Sbjct: 518 IMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEE-KEDSVSRHS 576

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           EKLA+AFG+A    G+ +RIVKNLR            S  Y  +++VRDR R+H F+ G 
Sbjct: 577 EKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGS 636

Query: 545 CSCGDYW 551
           CSC DYW
Sbjct: 637 CSCRDYW 643



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 147/371 (39%), Gaps = 72/371 (19%)

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN--GVIEAARSVFDNMPERDLVSWNS 160
           ++L   +++H +V ++G +   +++  L+   A +    ++ AR +F + P  D+   N+
Sbjct: 16  RSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNT 75

Query: 161 IISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           +I    ++     +L  +  MR      LD F+   LL + A   +L  GI LH  A   
Sbjct: 76  LIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVH 135

Query: 220 GFVESVYVGNALVDMYA-------------------------------KCGNLDSAFCVF 248
           G    ++VG  LV MY+                               +CG++  A  +F
Sbjct: 136 GLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMF 195

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGD-------------------------------EAIS 277
           +RM  R++ SWN M+ GY   G  +                               EA  
Sbjct: 196 NRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFG 255

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
           FF+++   G  P+ ++  G L  C+  G +E G +  H  + +      +     L+D Y
Sbjct: 256 FFRELQQVGMRPNEVSLTGALSACADAGAIEFG-KILHGFIEKSGFLWMVSVNNALLDTY 314

Query: 338 GRAGKLEKALEVINTSSPSDPVL-WRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGD 394
            + G +  A  V         ++ W +++    +H     GE A++   ++E +      
Sbjct: 315 SKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMH---GYGEEAIQLFHEMEESGIRPDG 371

Query: 395 YVLLATIYACT 405
              ++ +YAC+
Sbjct: 372 IAFISILYACS 382


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 197/525 (37%), Positives = 297/525 (56%), Gaps = 18/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+ +      +WN++I  + Q+ +  +A+   + M +  + + D  T    L  C 
Sbjct: 48  ARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGV-KMDAITVASVLPVCA 106

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +V  +   + +H +VI+ G E  + VS  L+  YA  G +  A+ VF  +  +D+VSWN+
Sbjct: 107 QVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNT 165

Query: 161 IISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           +I+ Y Q     EA+++Y  M   E++  +  T V +L + +HVGAL  G+ +H    + 
Sbjct: 166 LITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKN 225

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
                V+VG  L+DMY KCG LD A  +F ++ +++ + WN+MI  YGVHG G++A+  F
Sbjct: 226 CLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELF 285

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           ++M      PD ITF+ LL  CSH GLV +    F+MM   Y +KP +KHYGC+VDL+GR
Sbjct: 286 REMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGR 345

Query: 340 AGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           AG+LE A   I       D   W  LL +C+IH N+E+G+ A + L ++++ + G YVLL
Sbjct: 346 AGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLL 405

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + IYA     EGV   R L +  G++  PGWS I + N+V  F   +++HP  + IYR+L
Sbjct: 406 SNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYREL 465

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
            ++  + K IGY  D     V     ED  E     HSE+LAIA+G+ +T   T +RI K
Sbjct: 466 RDLTSKIKTIGYVPD--FCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFK 523

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            SI   R++IVRD  R+HHF+ G CSCGDYW
Sbjct: 524 NLRVCGDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 157/284 (55%), Gaps = 10/284 (3%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           +++H  V++ G+E  V V+ +L+  Y+  G++  AR +FD+MP RD  SWN++IS Y Q 
Sbjct: 14  KKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQN 73

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
               EAL + + MR E V +D  T+  +L  CA VG +  G  +H    + G    ++V 
Sbjct: 74  GNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVS 133

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           NAL++MYAK G+L  A  VF  + K DV+SWN++I GY  +G   EAI  +  +LM    
Sbjct: 134 NALINMYAKFGSLGHAQKVFGLLIK-DVVSWNTLITGYAQNGLASEAIEVY--LLMEEHE 190

Query: 289 ---PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
              P+  T++ +L   SH G +++G+   H  V +  L   +    CL+D+YG+ GKL+ 
Sbjct: 191 EIIPNQGTWVSILPAYSHVGALQQGMR-IHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDD 249

Query: 346 ALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
           A+ +       + V W  ++    +H +   GE A++   +++A
Sbjct: 250 AISLFYQVPRKNSVPWNAMISCYGVHGD---GEKALELFREMKA 290



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 2/162 (1%)

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           G L  G  +H +  ++GF   V+V  +LV MY++ G +  A  +F  M  RD  SWN+MI
Sbjct: 8   GDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMI 67

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            GY  +G   EA+    +M + G   D+IT   +L  C+  G +  G +  H+ V ++ L
Sbjct: 68  SGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSG-KLIHLYVIKHGL 126

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +  +     L+++Y + G L  A +V       D V W TL+
Sbjct: 127 EFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLI 167


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 209/549 (38%), Positives = 319/549 (58%), Gaps = 31/549 (5%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+ +YA    S+L  A+ +F++        WN++++A A +    +A+     M    L 
Sbjct: 290 LIEAYA--ALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADM--GRLG 345

Query: 86  RP-DTFTFTFTLKAC-----ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
            P D++++   LKAC       + A  + +E+H   IR GY     V+T L+  YA  G+
Sbjct: 346 VPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGI 405

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLL 197
           +  A  VF +MP+R+LVSW+++I CY +     +A+++++ M   D  L  +  T+V +L
Sbjct: 406 VSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVL 465

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDV 256
            +CA V AL  G  LH      GF   V V NAL+ MY KCG L++   +F+ + R+R+V
Sbjct: 466 HACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNV 525

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           +SWNS+I GYG+HG G E++  F++M+  G  P+ ITF+ +L  CSH GLVE+G + F  
Sbjct: 526 VSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFES 585

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS--SPSDPVLWRTLLGSCKIHRNV 374
           MV  YN+ P  +HY C+VDL GRAG+L++A+E+I +    PS P +W +LLG+C+IH +V
Sbjct: 586 MVE-YNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPS-PQVWGSLLGACRIHGHV 643

Query: 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEI 434
           E  E+A  +L  LE  +AG+YVLLA IYA  K +  V   ++L++ + ++  PG SWIE+
Sbjct: 644 EYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEV 703

Query: 435 GNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY 494
             +++ FV  D  +P  + +   + E + + K  GY  D   V       E   E+    
Sbjct: 704 KKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEK--ERILLG 761

Query: 495 HSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRD 542
           HSEKLA+AFGL  T  G ++RI KNLR            S    R+++VRD  R+HHFR+
Sbjct: 762 HSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRN 821

Query: 543 GLCSCGDYW 551
           G+CSC DYW
Sbjct: 822 GVCSCRDYW 830



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 135/305 (44%), Gaps = 18/305 (5%)

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELH-----GFVIRSGYERCVVVSTNLMRGY 134
           L+  L  P   T+   L A  R +       +H       V RS       +ST L+  Y
Sbjct: 239 LLQGLPAPTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSD----PFLSTRLIEAY 294

Query: 135 AANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL- 193
           AA   + AAR VFD  P +++  WN+++     A    EAL     M    V +D ++  
Sbjct: 295 AALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYA 354

Query: 194 ----VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
                C+ +S +H+ A      +H  A   G+    +V   L+D YAK G +  A  VF+
Sbjct: 355 HGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFT 414

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM--AGFHPDSITFLGLLCGCSHQGLV 307
            M  R+++SW++MI  Y  + R  +AI  F++M+   A   P+SIT + +L  C+    +
Sbjct: 415 SMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNAL 474

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLG 366
            +G +  H  + R      +     L+ +Y + G LE    + N      + V W +L+ 
Sbjct: 475 GQG-KVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLIS 533

Query: 367 SCKIH 371
              +H
Sbjct: 534 GYGMH 538


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/522 (37%), Positives = 301/522 (57%), Gaps = 18/522 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F ++       W+ +I  +AQS    +A+  +  M  A    P+ FTF   L++C  ++
Sbjct: 199 VFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRA-FVLPNQFTFASVLQSCASIE 257

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L   +++H  V++ G +  V VS  LM  YA  G ++ +  +F  +P R+ V+WN++I 
Sbjct: 258 NLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIV 317

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y Q+    +AL LY+ M    V     T   +L +CA + A+ +G  +H ++ +  + +
Sbjct: 318 GYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDK 377

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            V VGNAL+DMYAKCG++ +A  VF  + +RD +SWN+MI GY +HG   EA+  F+ M 
Sbjct: 378 DVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQ 437

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
                P+ +TF+ +L  CS+ GL++ G  YF  MV  Y ++P ++HY C+V L GR+G L
Sbjct: 438 ETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHL 497

Query: 344 EKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           +KA+++I    P +P   +WR LLG+C IH +V++G ++ + ++Q++      +VLL+ I
Sbjct: 498 DKAVKLIE-EIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNI 556

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           YA T+    VA  RK +K+ G+K  PG SWIE    VH F V D SHPD  MI   LE +
Sbjct: 557 YARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWL 616

Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
             + +  GY  D  L AV     +D  ++    HSE+LA+AFGL  TP    +RI+KNLR
Sbjct: 617 NMKTEKAGYVPD--LNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLR 674

Query: 522 ------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                       S    RD+I+RD  R+HHF+DG+CSCGDYW
Sbjct: 675 ICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 184/349 (52%), Gaps = 4/349 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+++YA  V  S++ A+  F+ I      +W  ++  +A++     ++  +  M M 
Sbjct: 79  GTALIDAYA--VCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMV 136

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
             + P+ FTF   LKAC  ++A +  + +HG V+++ YE  + V   L+  Y   G    
Sbjct: 137 GFN-PNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDAND 195

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
              VF+ MP+ D++ W+ +IS Y Q++   EA++L+ +MR   V  + FT   +L SCA 
Sbjct: 196 VLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCAS 255

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +  L +G  +H    ++G   +V+V NAL+D+YAKCG LD++  +F  +  R+ ++WN+M
Sbjct: 256 IENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTM 315

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           IVGY   G GD+A+S +K ML        +T+  +L  C+    +E G +  H +  +  
Sbjct: 316 IVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQ-IHSLSLKTI 374

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
               +     L+D+Y + G ++ A  V +  S  D + W  ++    +H
Sbjct: 375 YDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMH 423



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 153/320 (47%), Gaps = 6/320 (1%)

Query: 48  IQNPQTQAWNSLIRAFAQS--LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKAL 105
           + +  T ++ +LI+ + QS  L  +  +F   H     L   + F FT  LK    V+  
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHEL---NPFVFTTILKLLVSVECA 57

Query: 106 NKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCY 165
                LH  + + G+E    V T L+  YA  G + +AR  FD +  +D+VSW  +++CY
Sbjct: 58  ELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACY 117

Query: 166 TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV 225
            +     ++L+L+  MR      + FT   +L +C  + A ++G  +H    +  +   +
Sbjct: 118 AENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDL 177

Query: 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
           YVG  L+D+Y K G+ +    VF  M K DV+ W+ MI  Y    +  EA+  F QM  A
Sbjct: 178 YVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRA 237

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
              P+  TF  +L  C+    ++ G +  H  V +  L   +     L+D+Y + G+L+ 
Sbjct: 238 FVLPNQFTFASVLQSCASIENLQLG-KQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDN 296

Query: 346 ALEVINTSSPSDPVLWRTLL 365
           ++++       + V W T++
Sbjct: 297 SMKLFMELPNRNEVTWNTMI 316


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 199/522 (38%), Positives = 300/522 (57%), Gaps = 18/522 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LF+QI +P    +NSLIRA   + S   A+  Y  ML A   RP++FT  F LKAC  V 
Sbjct: 82  LFDQIPDPTAFCYNSLIRALPAAGSA-PALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 140

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-ERDLVSWNSII 162
           A  + ++LH   +R G      V T L+  YA    +  AR+VFD M  +++LV+W++++
Sbjct: 141 APGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMV 200

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           S Y++     EAL L+  M+   V  D  T+V ++S+CA  GAL++G ++H      G  
Sbjct: 201 SGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGIT 260

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
             + +  AL+DMYAKCG ++ A  VF  M ++D  +W++MIVG+ +HG  ++A+  F +M
Sbjct: 261 VDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRM 320

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
           L     P+++TF+G+L  C+H GLVE+G  Y+ +M     +KP +++YGC+VDL  R+G 
Sbjct: 321 LELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLCRSGL 379

Query: 343 LEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           L+ A   VI      + V+WRTLL +CK    ++I E A K L++LE  +  +YVLL+ +
Sbjct: 380 LDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNL 439

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           YA     + V+  R+ +K   +    G S IEI   +H+FVV D SHP+   I   L E+
Sbjct: 440 YASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLREM 499

Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
             R +  G+    +  AV     E+  E +   HSE+LAIA+GL  T     +R+VKNLR
Sbjct: 500 ADRVRRAGHKPWTA--AVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLR 557

Query: 522 ------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                       S AY+R+++VRDRVR+H F  G CSC D+W
Sbjct: 558 FCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 192/531 (36%), Positives = 307/531 (57%), Gaps = 23/531 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
            +SYA+++F+++ +    +W S+I  + Q+  P++A+  +  M   ++ +PD       +
Sbjct: 135 QISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNV-KPDWIALVSVM 193

Query: 97  KACERVKALNKCQELHGFVIRSG--YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            A   V+ L + + +HG V + G  +E  +V+S   M  YA  G++E AR  F+ M + +
Sbjct: 194 TAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTM--YAKRGLVEVARFFFNRMEKPN 251

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           L+ WN++IS Y    +  EA+KL+  M  +++ +D  T+   + + A VG+L +  +L  
Sbjct: 252 LILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDG 311

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              +  + +  +V   L+DMYAKCG++  A CVF R+  +DV+ W+ MI+GYG+HG G E
Sbjct: 312 YISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQE 371

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           AI  + +M  AG  P+  TF+GLL  C + GLV+EG E FH+M   + ++P  +HY C+V
Sbjct: 372 AICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVV 430

Query: 335 DLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           DL GRAG L +A + I  S P  P   +W  LL +CKIHR V +GEIA + L  L+  + 
Sbjct: 431 DLLGRAGYLNQAYDFI-MSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNT 489

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
           G YV L+ +YA       VA  R ++   G+    G S IEI   +  F V D+SHP + 
Sbjct: 490 GHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSK 549

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            I+ +L+ +  R K  GY     + +V    + + +E++  +HSE+LA+A+G+ +T  GT
Sbjct: 550 EIFEELDRLEKRLKAAGYVP--HMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGT 607

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +LRI KNLR            S    R++I+RD  R+HHF+DG+CSCGD+W
Sbjct: 608 TLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 179/367 (48%), Gaps = 3/367 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++YA   F ++  P    WN++I+ + Q       I  Y  M ++ +  P+ FTF + LK
Sbjct: 35  VNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQV-HPNCFTFLYVLK 93

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC         +++HG   + G+   V V  +L+  YA  G I  AR VFD + +R +VS
Sbjct: 94  ACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVS 153

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W SIIS Y Q    +EAL +++ MR  +V  D   LV ++++  +V  L  G  +H +  
Sbjct: 154 WTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVT 213

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           ++G      +  +L  MYAK G ++ A   F+RM K +++ WN+MI GY  +G G+EAI 
Sbjct: 214 KLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIK 273

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++M+      DSIT    +   +  G +E    +    +S+   +        L+D+Y
Sbjct: 274 LFREMITKNIRVDSITMRSAVLASAQVGSLELA-RWLDGYISKSEYRDDTFVNTGLIDMY 332

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
            + G +  A  V +  +  D VLW  ++    +H + +   I + N ++       D   
Sbjct: 333 AKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQ-EAICLYNEMKQAGVCPNDGTF 391

Query: 398 LATIYAC 404
           +  + AC
Sbjct: 392 IGLLTAC 398



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 4/268 (1%)

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           +I SG  +C  +    +      G +  A   F  + E D++ WN+II  YTQ +     
Sbjct: 10  LIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAP 69

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           +++Y  M+   V  + FT + +L +C       +G  +H    + GF  +V+V N+LV M
Sbjct: 70  IRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSM 129

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAK G +  A  VF ++  R V+SW S+I GY  +G   EA++ FK+M      PD I  
Sbjct: 130 YAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIAL 189

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           + ++   ++   + +G +  H +V++  L+        L  +Y + G +E A    N   
Sbjct: 190 VSVMTAYTNVEDLGQG-KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME 248

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
             + +LW  ++     + N   GE A+K
Sbjct: 249 KPNLILWNAMISG---YANNGYGEEAIK 273


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 192/529 (36%), Positives = 295/529 (55%), Gaps = 19/529 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A+L+F+ +      +WNS++  + Q+  P +AI  +  ML   +  P   T    L
Sbjct: 298 SVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGID-PTGVTIMEAL 356

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  +  L + + +H FV +      + V  +L+  Y+    ++ A  +F+N+  R  V
Sbjct: 357 HACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHV 416

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I  Y Q     EAL  +  M+   +  D FT+V ++ + A +       ++H + 
Sbjct: 417 SWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLI 476

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                 ++++V  ALVDMY+KCG +  A  +F  +  R V++WN+MI GYG HG G  A+
Sbjct: 477 IRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAAL 536

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F +M      P+ IT+L ++  CSH GLV+EG+ +F  M   Y L+P + HYG +VDL
Sbjct: 537 DLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDL 596

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG++++A + I  + P  P   ++  +LG+CKIH+N+E+GE A K L +L     G 
Sbjct: 597 LGRAGRIKEAWDFIE-NMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGY 655

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           +VLLA IYA T     VA  RK ++  G+K TPG S +E+ N+VH F     +HP +  I
Sbjct: 656 HVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRI 715

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y  LEE+++  K  GY  D +L+       +D  E+    HSEKLAIAFGL  T  GT++
Sbjct: 716 YAFLEELVYEIKAAGYVPDTNLIL---DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTI 772

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + KNLR            S+   R++IVRD  R+HHF++G+CSCGDYW
Sbjct: 773 HVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 191/348 (54%), Gaps = 5/348 (1%)

Query: 21  IHGEWLLNSYAISVSS---SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYN 77
           ++ E L  +  +S+ S   S++ A  +F  I +     ++++++ +A++ S   A+ +  
Sbjct: 77  LYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLC 136

Query: 78  HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
            M    + +P  + FT+ LK C     L + +E+HG +I + +   V   T ++  YA  
Sbjct: 137 RMRYDDV-KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKC 195

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
             I+ A  +FD MPERDLVSWN+II+ ++Q  F  +AL+L  RM+ E    D  TLV +L
Sbjct: 196 RQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVL 255

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
            + A VG L +G  +H  A   GF + V +  AL DMY+KCG++++A  +F  M ++ V+
Sbjct: 256 PAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVV 315

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           SWNSM+ GY  +G  ++AI+ F++ML  G  P  +T +  L  C+  G +E G ++ H  
Sbjct: 316 SWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG-KFVHKF 374

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           V + NL   I     L+ +Y +  +++ A ++ N  +    V W  ++
Sbjct: 375 VDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMI 422



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 213/428 (49%), Gaps = 22/428 (5%)

Query: 16  RQAHEIHGEWLLNSYAISVSS------------SLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           ++  EIHG+ + NS+A +V +             +  A  +F+++      +WN++I  F
Sbjct: 164 KRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGF 223

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           +Q+    +A+     M      RPD+ T    L A   V  L   + +HG+ IR+G+ + 
Sbjct: 224 SQNGFAKKALELVLRM-QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL 282

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V +ST L   Y+  G +E AR +FD M ++ +VSWNS++  Y Q     +A+ ++E+M  
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE 342

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           E +   G T++  L +CA +G L  G F+H+   ++     + V N+L+ MY+KC  +D 
Sbjct: 343 EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDI 402

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F+ +  R  +SWN+MI+GY  +GR  EA++ F +M   G  PDS T + ++   + 
Sbjct: 403 ASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAE 462

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
             +     ++ H ++ R  L   I     LVD+Y + G +  A ++ +  S    + W  
Sbjct: 463 LSVTRHA-KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNA 521

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYACTKD---EEGVARTRKLI 418
           ++     H    +G  A+    +++  A    D   L+ I AC+     +EG+   + + 
Sbjct: 522 MIDGYGTH---GLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMK 578

Query: 419 KSNGIKTT 426
           +  G++ +
Sbjct: 579 QDYGLEPS 586



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 128/270 (47%), Gaps = 4/270 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+ C  +K L++   L   VI++G     +  T L+  ++  G I  A  VF+ + ++  
Sbjct: 56  LELCTSMKELHQIIPL---VIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLD 112

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
             +++++  Y + S    AL    RMR++DV    +    LL  C     L  G  +H  
Sbjct: 113 ALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQ 172

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
                F  +V+    +V+MYAKC  +D A+ +F RM +RD++SWN++I G+  +G   +A
Sbjct: 173 LITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA 232

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +    +M   G  PDSIT + +L   +  GL+  G +  H    R      +     L D
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG-KSIHGYAIRAGFAKLVNISTALAD 291

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y + G +E A  + +       V W +++
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMM 321


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 204/558 (36%), Positives = 320/558 (57%), Gaps = 27/558 (4%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVSSSLSY-----AQLLFNQIQNPQTQAWNSLIRAFAQS 66
           L  AR+  +I     + SY   ++  +S      AQ LF++I      +WN++I  + ++
Sbjct: 140 LEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVET 199

Query: 67  LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV 126
            +  +A+  +  M+M +  RPD  T    + AC +  ++   + +H ++   G+   + +
Sbjct: 200 GNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKI 259

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
              L+  Y+  G +E A  +FD +  +D++SWN++I  YT  + + EAL L++ M     
Sbjct: 260 VNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 319

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM--GFVESVY-VGNALVDMYAKCGNLDS 243
             +  T++ +L +CAH+GA+++G ++H    +   G V +V  +  +L+DMYAKCG++D+
Sbjct: 320 TPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDA 379

Query: 244 AFCVF-SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
           A  VF S M  R + +WN+MI G+ +HGR + A   F +M M G  PD ITF+GLL  CS
Sbjct: 380 AQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACS 439

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VL 360
           H G+++ G   F  M   Y + P ++HYGC++DL G +G  ++A E+INT  P +P  V+
Sbjct: 440 HSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINT-MPMEPDGVI 498

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           W +LL +CKIH N+E+GE   K L+++E  ++G YVLL+ IYA       VA+ R L+  
Sbjct: 499 WCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLND 558

Query: 421 NGI-KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
            G+ K  PG S IEI + VH+F++ DK HP    IY  LEE+    +  G+  D S   V
Sbjct: 559 KGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTS--EV 616

Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
                E++ E +  +HSEKLAIAFGL +T  GT L I+KNLR            S  Y R
Sbjct: 617 LQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKR 676

Query: 528 DLIVRDRVRYHHFRDGLC 545
           ++I RDR R+ HFRDG+C
Sbjct: 677 EIIARDRTRFXHFRDGVC 694



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 201/372 (54%), Gaps = 42/372 (11%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR-PDTFTFTFTL 96
             YA  +F+ IQ P    WN++ R  A S  P+ A+  Y  ++M SL   PD++TF F L
Sbjct: 39  FPYAISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLY--LVMISLGLLPDSYTFPFLL 96

Query: 97  KACERVKALNKCQELHGFVIRSGYE-------------------------------RCVV 125
           K+C + K   + Q++HG V++ G++                               R VV
Sbjct: 97  KSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVV 156

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY-ERMRFE 184
             T L+ GY + G IE+A+ +FD +P +D+VSWN++IS Y +   + EAL+L+ E M   
Sbjct: 157 SYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMT 216

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
           +V  D  T+V ++S+CA   ++ +G  +H    + GF  ++ + NAL+D+Y+K G +++A
Sbjct: 217 NVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETA 276

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             +F  +  +DV+SWN++I GY       EA+  F++ML +G  P+ +T L +L  C+H 
Sbjct: 277 CELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 336

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYG----CLVDLYGRAGKLEKALEVINTSSPSDPV- 359
           G ++ G  + H+ +++  LK  + +       L+D+Y + G ++ A +V ++S  +  + 
Sbjct: 337 GAIDIG-RWIHVYINK-KLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLS 394

Query: 360 LWRTLLGSCKIH 371
            W  ++    +H
Sbjct: 395 TWNAMISGFAMH 406


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 193/530 (36%), Positives = 296/530 (55%), Gaps = 21/530 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF  + +     WN +I  + Q+ +  +A+  +  +    +   D  TF   L 
Sbjct: 257 LGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKAND-ITFVLMLN 315

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
               + +L K + +H  V  +GY+R  VV+T LM  Y        A  +F +M  +D+++
Sbjct: 316 VYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVIT 375

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W  +   Y Q  F  EAL+L++ M+ E       TLV +L +CAH+ AL  G  +H    
Sbjct: 376 WTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHII 435

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           E  F   + V  AL++MY KCG +  A  VF +M KRD+L WNSM+  Y  HG  DE + 
Sbjct: 436 ENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQ 495

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM + G   D+++F+ +L   SH G V +G +YF  M+  +++ P  + YGC+VDL 
Sbjct: 496 LFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLL 555

Query: 338 GRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GRAG++++A++++   S    D +LW TLLG+C+ H   +  + A + +++ + + +G Y
Sbjct: 556 GRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAY 615

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V+L+ +YA   D +GV R RKL++S G+K  PG S IEI N+VH+F+  D+SHP    IY
Sbjct: 616 VVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIY 675

Query: 456 RKLEEIMHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
            +L+ +    +  GY  D  ++   V     ED L     YHSE+LAIAFGL +TP GT 
Sbjct: 676 AELDVLNSEMRAAGYIPDTKMILHDVEDERKEDML----FYHSERLAIAFGLISTPPGTP 731

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR++KNLR            S    R+++VRD  R+H+F+DG CSC DYW
Sbjct: 732 LRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 178/350 (50%), Gaps = 6/350 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+N Y  +   S+  A   F ++++    +W ++I A  Q      A + Y  M + 
Sbjct: 143 GTALINMY--NKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLD 200

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +  P+  T      A      L++ + ++G V     E  V V  + +  +   G++  
Sbjct: 201 GVV-PNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGD 259

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR +F++M +RD+V+WN +I+ Y Q     EA++L+ R++ + V  +  T V +L+    
Sbjct: 260 ARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTS 319

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + +L  G  +H +  E G+     V  AL+ +Y +C     A+ +F  M  +DV++W  M
Sbjct: 320 LTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVM 379

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRY 321
            V Y  +G   EA+  F++M + G  P S T + +L  C+H   +++G + + H++ +R+
Sbjct: 380 CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRF 439

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            ++  ++    L+++YG+ GK+ +A+ V    +  D ++W ++LG+   H
Sbjct: 440 RMEMVVE--TALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQH 487



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 160/320 (50%), Gaps = 6/320 (1%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +PDT  F   L+ C   K ++  + +H  V   G+E+  +V  +L++ YA  G +  A+ 
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF+ +  +D+ +W  +I  Y Q   +  AL ++ +M+ EDV     T V +L++CA   +
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G+ +H    + GF   V+VG AL++MY KCG++  A+  F R+  RDV+SW +MI  
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
              H +   A   +++M + G  P+ IT   +         + EG ++ + +VS   ++ 
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEG-KFVYGLVSSGVMES 239

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE-IAMKNL 384
            ++     V+++G AG L  A  +       D V W  ++      +N   GE + +   
Sbjct: 240 DVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVI--TLYVQNENFGEAVRLFGR 297

Query: 385 VQLEAASAGD--YVLLATIY 402
           +Q +   A D  +VL+  +Y
Sbjct: 298 LQQDGVKANDITFVLMLNVY 317


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 196/565 (34%), Positives = 319/565 (56%), Gaps = 30/565 (5%)

Query: 4   KKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           K H     L++  QA   H     N Y++ + S     + LF+++      +WN++I   
Sbjct: 123 KFHPHLSPLHEFPQARHNHN----NKYSVKIDS----VRKLFDRMPVRDVVSWNTVIAGN 174

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           AQ+    +A+     M   +L RPD+FT +  L        + K +E+HG+ IR G+++ 
Sbjct: 175 AQNGMYEEALNMVKEMGKENL-RPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKD 233

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V + ++L+  YA    +E +   F  +  RD +SWNSII+   Q     + L  + RM  
Sbjct: 234 VFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLK 293

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           E V     +   ++ +CAH+ ALN+G  LH     +GF ++ ++ ++L+DMYAKCGN+  
Sbjct: 294 EKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKM 353

Query: 244 AFCVFSR--MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           A  +F++  M  RD++SW ++I+G  +HG   +A+S F++ML+ G  P  + F+ +L  C
Sbjct: 354 ARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTAC 413

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVL 360
           SH GLV+EG +YF+ M   + + PG++HY  + DL GRAG+LE+A + I N        +
Sbjct: 414 SHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSV 473

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           W TLL +C+ H+N+E+ E  +  ++ ++  + G +V+++ IY+  +     A+ R  ++ 
Sbjct: 474 WSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRK 533

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD--ESLVA 478
            G+K TP  SWIE+GN+VH F+  DKSHP  D I   L  ++ + +  GY  D  E L  
Sbjct: 534 TGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHD 593

Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-------SIAY-----S 526
           V      D L      HSE+LAIAFG+ +T  GT++R++KN+R       +I +      
Sbjct: 594 VDEEHKRDLLRT----HSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVG 649

Query: 527 RDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++IVRD  R+HHF++G CSCGDYW
Sbjct: 650 REIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 166/356 (46%), Gaps = 26/356 (7%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           +AQ++      P + AW  +I+ +A       ++  +N +    +S PD   F   L+A 
Sbjct: 28  HAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGIS-PDRHLFPSLLRAS 86

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA----------------------N 137
              K  N  Q LH  VIR G+   +  +  LM  Y+                       +
Sbjct: 87  TLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYS 146

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
             I++ R +FD MP RD+VSWN++I+   Q   + EAL + + M  E++  D FTL  +L
Sbjct: 147 VKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSIL 206

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
                   +  G  +H  A   GF + V++G++L+DMYAKC  ++ + C F  +  RD +
Sbjct: 207 PIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAI 266

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           SWNS+I G   +GR D+ + FF++ML     P  ++F  ++  C+H   +  G +  H  
Sbjct: 267 SWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQ-LHAY 325

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS--PSDPVLWRTLLGSCKIH 371
           + R            L+D+Y + G ++ A  + N       D V W  ++  C +H
Sbjct: 326 IIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMH 381


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 297/529 (56%), Gaps = 18/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +SYA+ LF+++  P+   WN++++ + ++  P +A+  Y  M    + RPD FTF F +K
Sbjct: 85  MSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGV-RPDPFTFPFVIK 143

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  +  L     +HG V++ G E    V T LM  Y   G +  A  +F +M ERDLV+
Sbjct: 144 ACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVA 203

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++I+   Q  F  +AL+ +  M    +  D  T+V  LS+C H+G L  G  ++  A 
Sbjct: 204 WNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAR 263

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           E G   ++ V NA +DM AKCG++D A  +F  M +R+V+SW+++I GY V+G  ++A++
Sbjct: 264 EEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALA 323

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR--YNLKPGIKHYGCLVD 335
            F +M   G  P+ +TFL +L  CSH G V EG +YF+ M      N++P  +HY C+VD
Sbjct: 324 LFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVD 383

Query: 336 LYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           L GR+G LE+A   I      +DP +W  LLG+C IH+N+++G+     L +L    A  
Sbjct: 384 LLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIASY 443

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           +VLL+ +YA       V + R+ +K  G +    +S +E   ++H     DKSHP +  I
Sbjct: 444 HVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSASI 503

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
             KLE+++ + K +GY  +   V       E   E + + HSEKLAIAF L        +
Sbjct: 504 LAKLEDLLKQMKSMGYIPETDSVFHDVEDEEK--ESTLSTHSEKLAIAFSLINGSPKFPI 561

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++KNLR            S    R++I+RD+ R+HHF++G+CSC D+W
Sbjct: 562 RVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 128/268 (47%), Gaps = 2/268 (0%)

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G +  AR +FD M +     WN+I+  Y +     +A+ +Y +MR   V  D FT   ++
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
            +CA +  L  G+ +H    + G      V   L+ MY K G L  A  +F  M +RD++
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +WN++I      G   +A+  F++M MAG  PDS+T +  L  C H G +E G E +   
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYE-F 261

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIG 377
                +   I  +   +D+  + G ++KA+ + +     + + W T++G   ++   E  
Sbjct: 262 AREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKA 321

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACT 405
            +A+ + ++ +         LA + AC+
Sbjct: 322 -LALFSRMKNQGVQPNYVTFLAVLSACS 348


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 197/533 (36%), Positives = 309/533 (57%), Gaps = 22/533 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++ YA  +F    NP    + +LI  F  S +   AI  Y+ ML  S+  PD +     L
Sbjct: 79  AIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSIL-PDNYLMASIL 137

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---- 152
           KAC    AL + +E+H   ++ G     +V   +M  Y   G +  AR VF+ MPE    
Sbjct: 138 KACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVA 197

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           +D V W ++I  + +      AL+ +  M+ E+V  + FT+VC+LS+C+ +GAL +G ++
Sbjct: 198 KDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWV 257

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H    +     +++VGNAL++MY++CG++D A  VF  M+ RDV+++N+MI G  ++G+ 
Sbjct: 258 HSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKS 317

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            +AI  F+ M+     P ++TF+G+L  CSH GLV+ G + FH M   Y ++P I+HYGC
Sbjct: 318 RQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGC 377

Query: 333 LVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           +VDL GR G+LE+A ++I T     D ++  TLL +CK+H+N+E+GE   K L     A 
Sbjct: 378 MVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQAD 437

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
           +G YVLL+ +YA +   +  A+ R  +K  G++  PG S IE+ N++H+F++ D  HP  
Sbjct: 438 SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRK 497

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
           + IY KLEE+    +  GY  ++ +V       E   E + A HSE+LAI +GL +T   
Sbjct: 498 ERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEK--EWALAIHSERLAICYGLISTEPC 555

Query: 512 TSLRIVKNLRSIAYS-------------RDLIVRDRVRYHHFRDGLCSCGDYW 551
           T +R++KNLR + Y              R ++VRDR R+H+F +G CSCGDYW
Sbjct: 556 TVIRVMKNLR-VCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 131/270 (48%), Gaps = 5/270 (1%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
           +R K +N+   +H  +IR+G+ +   +   L+R  +    I+ A  +F      ++  + 
Sbjct: 40  QRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYT 99

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++I  +  +  + +A++LY RM  + +  D + +  +L +C    AL  G  +H  A ++
Sbjct: 100 ALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKL 159

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK----RDVLSWNSMIVGYGVHGRGDEA 275
           G   +  V   ++++Y KCG L  A  VF  M +    +D + W +MI G+  +   + A
Sbjct: 160 GLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRA 219

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F+ M      P+  T + +L  CS  G +E G  + H  + ++ ++  +     L++
Sbjct: 220 LEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALIN 278

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y R G +++A  V +     D + + T++
Sbjct: 279 MYSRCGSIDEAQTVFDEMKDRDVITYNTMI 308


>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
          Length = 1056

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 205/523 (39%), Positives = 298/523 (56%), Gaps = 35/523 (6%)

Query: 55   AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
            A+NSLI   A+   P+     +  M   ++ R D  T    + A      L+   ++H  
Sbjct: 543  AFNSLISGCARHSLPVACFALFRRMRAIAV-RFDAVTLLALVPAAP----LSVVPQVHAL 597

Query: 115  VIRSGYERCVVVSTNLMRGYAANGVIEAA--RSVFDNMP--ERDLVSWNSIISCYTQASF 170
              + G      V+  LM  YA  G   AA  R VFD MP   RDLVSWN+++S + Q   
Sbjct: 598  AAQVGLATETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGL 657

Query: 171  HLEALKLYERMRFED---VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE--MGFVESV 225
             ++AL LY RMR  +   V  D  T+V +LSS AH+GA  +G        +   GF  +V
Sbjct: 658  AVDALDLYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDAEHYVVQRLPGFRTNV 717

Query: 226  YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
             + NAL++ +A+CG+L  A  +F  M  + ++SW ++I G+G+HG G  A+S F++M+  
Sbjct: 718  QLCNALINFHARCGSLPRAQQLFDEMPAKSIVSWTALITGHGMHGNGGVAVSLFERMVSE 777

Query: 286  GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
            G HPD++  +G+L  CSH GL +EG  YF  M S Y L+P ++HY C+VDL GRAG+LE+
Sbjct: 778  GIHPDNVAMVGVLSACSHAGLYDEGRMYFSTMESVYKLRPTLEHYTCIVDLLGRAGRLEE 837

Query: 346  ALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
            A E+I++   P+D  +W  LLG+CKIH+NVEIGE A   +V+LE  + G YVL++ IY  
Sbjct: 838  ARELISSMPMPADGAVWGALLGACKIHKNVEIGEEAFARVVELEPRNVGYYVLMSNIYTD 897

Query: 405  TKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHR 464
            T   + VAR R +++  G+K  PG S++E   +VH F+ DD SHP A  IY    E++ R
Sbjct: 898  TGQLDCVARVRAVMRKRGLKKEPGCSYVEHNGRVHLFMADDHSHPQARRIY----ELVTR 953

Query: 465  AKFIGYTKD---ESLVAVS-GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
             + +   K    ES+VAV  G   ++  +    +HSEKLA+AFGL  T  G+ + ++KNL
Sbjct: 954  LELMVKEKSGVRESVVAVPKGRMEKEAAQPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNL 1013

Query: 521  R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R            S   +R  +VRD  R+H F  G+CSC DYW
Sbjct: 1014 RVCGDCHSFLKAVSATTNRSFLVRDASRFHRFDGGVCSCKDYW 1056


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 198/541 (36%), Positives = 311/541 (57%), Gaps = 21/541 (3%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           ++LN YA     SL  AQ LF+++      +W  LI  ++QS    +A+  +  ML    
Sbjct: 145 FILNMYA--KCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGF 202

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
            +P+ FT +  LKA     + +  ++LH F ++ GY+  V V ++L+  YA    +  A+
Sbjct: 203 -QPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAK 261

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            +F+++  +++VSWN++I+ + +       ++L+ +M  +      FT   + ++CA  G
Sbjct: 262 VIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSG 321

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           +L  G ++H    + G     Y+GN L+DMYAK G++  A  VF R+ K+D++SWNS+I 
Sbjct: 322 SLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIIS 381

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GY  HG G EA+  F+QML A   P+ ITFL +L  CSH GL++EG  YF +M  ++ ++
Sbjct: 382 GYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIE 440

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMK 382
             + H+  +VDL GRAG+L +A + I    P  P   +W  LLGSC++H+N+++G  A +
Sbjct: 441 AQVAHHVTVVDLLGRAGRLNEANKFIE-EMPIKPTAAVWGALLGSCRMHKNMDLGVYAAE 499

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            + +L+   +G +VLL+ IYA        A+ RK++K +G+K  P  SW+EI N+VH FV
Sbjct: 500 QIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFV 559

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
            +D SHP  + I R  E+I  + K IGY  D S V    +  +  L+    YHSEKLA+A
Sbjct: 560 ANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQ--YHSEKLALA 617

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           F +  TP G ++RI KN+R            S    R++IVRD  R+HHF  G+CSC DY
Sbjct: 618 FAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDY 677

Query: 551 W 551
           W
Sbjct: 678 W 678



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 166/322 (51%), Gaps = 6/322 (1%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+   ++  L  C  ++ L + + +H  +  S +E  +V+   ++  YA  G +E A+ 
Sbjct: 102 EPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQD 161

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD MP +D+VSW  +IS Y+Q+    EAL L+ +M       + FTL  LL +     +
Sbjct: 162 LFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPS 221

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
            + G  LH  + + G+  +V+VG++L+DMYA+  ++  A  +F+ +  ++V+SWN++I G
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           +   G G+  +  F QML  GF P   T+  +   C+  G +E+G ++ H  V +   +P
Sbjct: 282 HARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQG-KWVHAHVIKSGGQP 340

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
                  L+D+Y ++G ++ A +V       D V W +++     H    +G  A++   
Sbjct: 341 IAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQH---GLGAEALQLFE 397

Query: 386 QLEAA--SAGDYVLLATIYACT 405
           Q+  A     +   L+ + AC+
Sbjct: 398 QMLKAKVQPNEITFLSVLTACS 419


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 197/569 (34%), Positives = 323/569 (56%), Gaps = 26/569 (4%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYA-ISVSSSLSYAQLLFNQIQNPQTQAWNSL 59
           +G + H+R + L  A       G  L++ YA  +   S+  ++ +F Q+      +W ++
Sbjct: 249 LGKQLHSRVIRLGLALDV--CVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 306

Query: 60  IRAFAQS-LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           I A+ QS     +AI  +  M+   + RP+ F+F+  LKAC  +      ++++ + ++ 
Sbjct: 307 ITAYVQSGECDKEAIELFCKMISGHI-RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 365

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G      V  +L+  YA +G +E AR  FD + E++LVS+N+I+  Y +     EA  L+
Sbjct: 366 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 425

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             +    +G+  FT   LLS  A +GA+  G  +H    + G+  +  + NAL+ MY++C
Sbjct: 426 NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRC 485

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           GN+++AF VF+ M  R+V+SW SMI G+  HG    A+  F +ML  G  P+ IT++ +L
Sbjct: 486 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 545

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--S 356
             CSH G++ EG ++F+ M   + + P ++HY C+VDL GR+G L +A+E IN S P  +
Sbjct: 546 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN-SMPLMA 604

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
           D ++WRTLLG+C++H N E+G  A + +++ E      Y+LL+ ++A     + V + RK
Sbjct: 605 DALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRK 664

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
            +K   +    G SWIE+ N+VH+F V + SHP A  IY++L+++  + K +GY  D   
Sbjct: 665 SMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDF 724

Query: 477 VA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
           V   +     E FL +    HSEK+A+AFGL +T     +RI KNLR            S
Sbjct: 725 VLHDIEEEQKEQFLFQ----HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYIS 780

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +A  R+++VRD  R+HH ++G+CSC DYW
Sbjct: 781 MATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 162/317 (51%), Gaps = 17/317 (5%)

Query: 41  AQLLFNQIQNPQTQ-AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           A+L+F  + N +   +W++++  FA +    QAI+ +  ML      P+ + F   ++AC
Sbjct: 80  ARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF-YPNEYCFAAVIRAC 138

Query: 100 ERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYA-ANGVIEAARSVFDNMPERDLVS 157
                    + ++GFV+++GY E  V V   L+  +   +G + +A  VFD MPER+LV+
Sbjct: 139 SNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVT 198

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W  +I+ + Q     +A+ L+  M       D FT   +LS+C  +G L +G  LH    
Sbjct: 199 WTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVI 258

Query: 218 EMGFVESVYVGNALVDMYAKC---GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD- 273
            +G    V VG +LVDMYAKC   G++D +  VF +M + +V+SW ++I  Y   G  D 
Sbjct: 259 RLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDK 318

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC- 332
           EAI  F +M+     P+  +F  +L  C +      G +     V  Y +K GI    C 
Sbjct: 319 EAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ-----VYSYAVKLGIASVNCV 373

Query: 333 ---LVDLYGRAGKLEKA 346
              L+ +Y R+G++E A
Sbjct: 374 GNSLISMYARSGRMEDA 390



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 146/285 (51%), Gaps = 7/285 (2%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           PD  T++  LK+C R +     + +H  +++SG E   VV   L+  Y+  G  E AR +
Sbjct: 24  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83

Query: 147 FDNM-PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           F+ M  +RDLVSW++++SC+   S   +A+  +  M       + +    ++ +C++   
Sbjct: 84  FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 143

Query: 206 LNMGIFLHRIACEMGFVES-VYVGNALVDMYAK-CGNLDSAFCVFSRMRKRDVLSWNSMI 263
             +G  ++    + G++E+ V VG  L+DM+ K  G+L SA+ VF +M +R++++W  MI
Sbjct: 144 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 203

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
             +   G   +AI  F  M ++G+ PD  T+  +L  C+  GL+  G +  H  V R  L
Sbjct: 204 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ-LHSRVIRLGL 262

Query: 324 KPGIKHYGCLVDLYGRA---GKLEKALEVINTSSPSDPVLWRTLL 365
              +     LVD+Y +    G ++ + +V       + + W  ++
Sbjct: 263 ALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAII 307



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 4/195 (2%)

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           A    + M  ++   D  T   LL SC       +G  +HR   + G      V N L+ 
Sbjct: 10  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 69

Query: 234 MYAKCGNLDSAFCVFSRM-RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           +Y+KCG+ ++A  +F  M  KRD++SW++M+  +  +    +AI  F  ML  GF+P+  
Sbjct: 70  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 129

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-LVDLYGR-AGKLEKALEVI 350
            F  ++  CS+      G   +  +V    L+  +   GC L+D++ + +G L  A +V 
Sbjct: 130 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVC-VGCELIDMFVKGSGDLGSAYKVF 188

Query: 351 NTSSPSDPVLWRTLL 365
           +     + V W  ++
Sbjct: 189 DKMPERNLVTWTLMI 203


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 191/524 (36%), Positives = 292/524 (55%), Gaps = 15/524 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+++ N    +W ++I    Q   P +A+  Y  M     S+ +  T +  L A  
Sbjct: 203 ARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASA 262

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + +L+  +++HG ++R G +   VV  +L+  Y   G IE AR +FD M ERD+VSW +
Sbjct: 263 AIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTT 322

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I  Y +     E   L+  +   ++  + FT   +L++CA + A ++G  +H     +G
Sbjct: 323 MIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVG 382

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F       +ALV MY+KCG++++A  VF  + + D+ SW S++VGY  HG+ D+A+ FF+
Sbjct: 383 FDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFE 442

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            +L +G  PD I F+G+L  C+H GLV++G+EYFH +  ++ L   I HY C++DL  RA
Sbjct: 443 LLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARA 502

Query: 341 GKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+  +A  +IN      D  +W  LLG C+IH N+E+ + A K+L ++E  +   YV LA
Sbjct: 503 GQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLA 562

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            IYA        A  R+ + S GI   PG SWIEI  +VH F V D SHP +  I   L 
Sbjct: 563 NIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLS 622

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           E+  R K +GY  D + V       +   E++ +YHSEKLA+AFG+ +TP GT +++ KN
Sbjct: 623 ELSKRMKEVGYVPDTNFVLHDVELEQK--EENLSYHSEKLAVAFGIISTPSGTPIKVFKN 680

Query: 520 LRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR+                R +IVRD  R+H F  G CSC DYW
Sbjct: 681 LRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 147/317 (46%), Gaps = 32/317 (10%)

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG-------------YERC--- 123
           L+  + +P    +   LK C + +AL + +++H  +  SG             Y +C   
Sbjct: 110 LLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSGSIGLYISNRLLDMYAKCGSL 169

Query: 124 -------------VVVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
                         + S N+M  GY   G  E AR++FD MP RD  SW +IIS   Q +
Sbjct: 170 VDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHN 229

Query: 170 FHLEALKLYERMRFEDVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
              EAL+LY  M+  D    +  T+   L++ A + +L+MG  +H     MG      V 
Sbjct: 230 RPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVW 289

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
            +L+DMY KCG+++ A  +F +M +RDV+SW +MI  Y  +GR +E  + F+ ++ +   
Sbjct: 290 CSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIM 349

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           P+  TF G+L  C+     + G +  H  + R            LV +Y + G +E A  
Sbjct: 350 PNDFTFAGVLNACADLAAEDLGKQ-IHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKS 408

Query: 349 VINTSSPSDPVLWRTLL 365
           V       D   W +LL
Sbjct: 409 VFEILPQPDLFSWTSLL 425



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 123/236 (52%), Gaps = 3/236 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A+ +F++++     +W ++I  + ++    +    + H LM S   P+ FTF   L
Sbjct: 301 SIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRH-LMNSNIMPNDFTFAGVL 359

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  + A +  +++H +++R G++     ++ L+  Y+  G IE A+SVF+ +P+ DL 
Sbjct: 360 NACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLF 419

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRI 215
           SW S++  Y Q   H +AL  +E +       DG   + +LS+CAH G ++ G+ + H I
Sbjct: 420 SWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSI 479

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHG 270
             + G   ++     ++D+ A+ G    A  + + M  K D   W +++ G  +HG
Sbjct: 480 KEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHG 535


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 197/569 (34%), Positives = 323/569 (56%), Gaps = 26/569 (4%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYA-ISVSSSLSYAQLLFNQIQNPQTQAWNSL 59
           +G + H+R + L  A       G  L++ YA  +   S+  ++ +F Q+      +W ++
Sbjct: 267 LGKQLHSRVIRLGLALDV--CVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 324

Query: 60  IRAFAQS-LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           I A+ QS     +AI  +  M+   + RP+ F+F+  LKAC  +      ++++ + ++ 
Sbjct: 325 ITAYVQSGECDKEAIELFCKMISGHI-RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 383

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G      V  +L+  YA +G +E AR  FD + E++LVS+N+I+  Y +     EA  L+
Sbjct: 384 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 443

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             +    +G+  FT   LLS  A +GA+  G  +H    + G+  +  + NAL+ MY++C
Sbjct: 444 NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRC 503

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           GN+++AF VF+ M  R+V+SW SMI G+  HG    A+  F +ML  G  P+ IT++ +L
Sbjct: 504 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 563

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--S 356
             CSH G++ EG ++F+ M   + + P ++HY C+VDL GR+G L +A+E IN S P  +
Sbjct: 564 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN-SMPLMA 622

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
           D ++WRTLLG+C++H N E+G  A + +++ E      Y+LL+ ++A     + V + RK
Sbjct: 623 DALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRK 682

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
            +K   +    G SWIE+ N+VH+F V + SHP A  IY++L+++  + K +GY  D   
Sbjct: 683 SMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDF 742

Query: 477 VA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
           V   +     E FL +    HSEK+A+AFGL +T     +RI KNLR            S
Sbjct: 743 VLHDIEEEQKEQFLFQ----HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYIS 798

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +A  R+++VRD  R+HH ++G+CSC DYW
Sbjct: 799 MATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 162/317 (51%), Gaps = 17/317 (5%)

Query: 41  AQLLFNQIQNPQTQ-AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           A+L+F  + N +   +W++++  FA +    QAI+ +  ML      P+ + F   ++AC
Sbjct: 98  ARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF-YPNEYCFAAVIRAC 156

Query: 100 ERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYA-ANGVIEAARSVFDNMPERDLVS 157
                    + ++GFV+++GY E  V V   L+  +   +G + +A  VFD MPER+LV+
Sbjct: 157 SNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVT 216

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W  +I+ + Q     +A+ L+  M       D FT   +LS+C  +G L +G  LH    
Sbjct: 217 WTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVI 276

Query: 218 EMGFVESVYVGNALVDMYAKC---GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD- 273
            +G    V VG +LVDMYAKC   G++D +  VF +M + +V+SW ++I  Y   G  D 
Sbjct: 277 RLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDK 336

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC- 332
           EAI  F +M+     P+  +F  +L  C +      G +     V  Y +K GI    C 
Sbjct: 337 EAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ-----VYSYAVKLGIASVNCV 391

Query: 333 ---LVDLYGRAGKLEKA 346
              L+ +Y R+G++E A
Sbjct: 392 GNSLISMYARSGRMEDA 408



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 161/325 (49%), Gaps = 10/325 (3%)

Query: 48  IQNPQTQAW-NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALN 106
           ++NP  +   N LIR     +  L   F    ++    + PD  T++  LK+C R +   
Sbjct: 4   LKNPNFEPLKNRLIRQL--DVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQ 61

Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM-PERDLVSWNSIISCY 165
             + +H  +++SG E   VV   L+  Y+  G  E AR +F+ M  +RDLVSW++++SC+
Sbjct: 62  LGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCF 121

Query: 166 TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES- 224
              S   +A+  +  M       + +    ++ +C++     +G  ++    + G++E+ 
Sbjct: 122 ANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEAD 181

Query: 225 VYVGNALVDMYAK-CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           V VG  L+DM+ K  G+L SA+ VF +M +R++++W  MI  +   G   +AI  F  M 
Sbjct: 182 VCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME 241

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA--- 340
           ++G+ PD  T+  +L  C+  GL+  G +  H  V R  L   +     LVD+Y +    
Sbjct: 242 LSGYVPDRFTYSSVLSACTELGLLALGKQ-LHSRVIRLGLALDVCVGCSLVDMYAKCAAD 300

Query: 341 GKLEKALEVINTSSPSDPVLWRTLL 365
           G ++ + +V       + + W  ++
Sbjct: 301 GSVDDSRKVFEQMPEHNVMSWTAII 325


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 199/522 (38%), Positives = 300/522 (57%), Gaps = 18/522 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LF+QI +P    +NSLIRA   + S   A+  Y  ML A   RP++FT  F LKAC  V 
Sbjct: 131 LFDQIPDPTAFCYNSLIRALPAAGSA-PALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 189

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-ERDLVSWNSII 162
           A  + ++LH   +R G      V T L+  YA    +  AR+VFD M  +++LV+W++++
Sbjct: 190 APGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMV 249

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           S Y++     EAL L+  M+   V  D  T+V ++S+CA  GAL++G ++H      G  
Sbjct: 250 SGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGIT 309

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
             + +  AL+DMYAKCG ++ A  VF  M ++D  +W++MIVG+ +HG  ++A+  F +M
Sbjct: 310 VDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRM 369

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
           L     P+++TF+G+L  C+H GLVE+G  Y+ +M     +KP +++YGC+VDL  R+G 
Sbjct: 370 LELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLCRSGL 428

Query: 343 LEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           L+ A   VI      + V+WRTLL +CK    ++I E A K L++LE  +  +YVLL+ +
Sbjct: 429 LDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNL 488

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           YA     + V+  R+ +K   +    G S IEI   +H+FVV D SHP+   I   L E+
Sbjct: 489 YASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLREM 548

Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
             R +  G+    +  AV     E+  E +   HSE+LAIA+GL  T     +R+VKNLR
Sbjct: 549 ADRVRRAGHKPWTA--AVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLR 606

Query: 522 ------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                       S AY+R+++VRDRVR+H F  G CSC D+W
Sbjct: 607 FCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 184/440 (41%), Positives = 265/440 (60%), Gaps = 15/440 (3%)

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           +V+  L+  YA  G  + A  VF+ M ++D++SW S+++       + EAL+L+  MR  
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            +  D   +  +LS+CA +  L  G  +H    + G   S+ V N+LV MYAKCG ++ A
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             VF  M  +DV++W ++IVGY  +GRG E+++F+  M+ +G  PD ITF+GLL  CSH 
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRT 363
           GLVE G  YF  M   Y +KPG +HY C++DL GR+GKL +A E++N  +   D  +W+ 
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA 242

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LL +C++H NVE+GE A  NL +LE  +A  YVLL+ +Y+     E  A+TR+L+K  G+
Sbjct: 243 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
              PG SWIE+ ++VH+F+ +D+SHP    IY K++EIM   K  GY  D +        
Sbjct: 303 SKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFAL--HDM 360

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIV 531
            E+  E   AYHSEKLA+AFGL T P G  +RI KNLR            S  + R +I+
Sbjct: 361 DEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVIL 420

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RD   +HHFR+G CSC DYW
Sbjct: 421 RDSNCFHHFREGACSCSDYW 440



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 126/310 (40%), Gaps = 38/310 (12%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
             YA  +F ++ +    +W SL+     + S  +A+  +  M +  +  PD       L 
Sbjct: 18  FDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGI-HPDQIVIAAVLS 76

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  +  L   +++H   ++SG    + V  +L+  YA  G IE A  VFD+M  +D+++
Sbjct: 77  ACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVIT 136

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++I  Y Q     E+L  Y  M    V  D  T + LL +C+H G +  G    +   
Sbjct: 137 WTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQS-- 194

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
               +E VY      + YA                         MI   G  G+  EA  
Sbjct: 195 ----MEEVYGIKPGPEHYA------------------------CMIDLLGRSGKLMEAKE 226

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDL 336
              QM      PD+  +  LL  C   G VE G    + +   + L+P     Y  L +L
Sbjct: 227 LLNQM---AVQPDATVWKALLAACRVHGNVELGERAANNL---FELEPKNAVPYVLLSNL 280

Query: 337 YGRAGKLEKA 346
           Y  AGK E+A
Sbjct: 281 YSAAGKWEEA 290


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/531 (36%), Positives = 307/531 (57%), Gaps = 23/531 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
            +SYA+++F+++ +    +W S+I  + Q+  P++A+  +  M   ++ +PD       +
Sbjct: 150 QISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNV-KPDWIALVSVM 208

Query: 97  KACERVKALNKCQELHGFVIRSG--YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            A   V+ L + + +HG V + G  +E  +V+S   M  YA  G++E AR  F+ M + +
Sbjct: 209 TAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTM--YAKRGLVEVARFFFNRMEKPN 266

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           L+ WN++IS Y    +  EA+KL+  M  +++ +D  T+   + + A VG+L +  +L  
Sbjct: 267 LILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDG 326

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              +  + +  +V   L+DMYAKCG++  A CVF R+  +DV+ W+ MI+GYG+HG G E
Sbjct: 327 YISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQE 386

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           AI  + +M  AG  P+  TF+GLL  C + GLV+EG E FH+M   + ++P  +HY C+V
Sbjct: 387 AICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVV 445

Query: 335 DLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           DL GRAG L +A + I  S P  P   +W  LL +CKIHR V +GEIA + L  L+  + 
Sbjct: 446 DLLGRAGYLNQAYDFI-MSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNT 504

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
           G YV L+ +YA       VA  R ++   G+    G S IEI   +  F V D+SHP + 
Sbjct: 505 GHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSK 564

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            I+ +L+ +  R K  GY     + +V    + + +E++  +HSE+LA+A+G+ +T  GT
Sbjct: 565 EIFEELDRLEKRLKAAGYVP--HMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGT 622

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +LRI KNLR            S    R++I+RD  R+HHF+DG+CSCGD+W
Sbjct: 623 TLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 179/367 (48%), Gaps = 3/367 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++YA   F ++  P    WN++I+ + Q       I  Y  M ++ +  P+ FTF + LK
Sbjct: 50  VNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQV-HPNCFTFLYVLK 108

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC         +++HG   + G+   V V  +L+  YA  G I  AR VFD + +R +VS
Sbjct: 109 ACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVS 168

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W SIIS Y Q    +EAL +++ MR  +V  D   LV ++++  +V  L  G  +H +  
Sbjct: 169 WTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVT 228

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           ++G      +  +L  MYAK G ++ A   F+RM K +++ WN+MI GY  +G G+EAI 
Sbjct: 229 KLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIK 288

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++M+      DSIT    +   +  G +E    +    +S+   +        L+D+Y
Sbjct: 289 LFREMITKNIRVDSITMRSAVLASAQVGSLELA-RWLDGYISKSEYRDDTFVNTGLIDMY 347

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
            + G +  A  V +  +  D VLW  ++    +H + +   I + N ++       D   
Sbjct: 348 AKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQ-EAICLYNEMKQAGVCPNDGTF 406

Query: 398 LATIYAC 404
           +  + AC
Sbjct: 407 IGLLTAC 413



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 4/268 (1%)

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           +I SG  +C  +    +      G +  A   F  + E D++ WN+II  YTQ +     
Sbjct: 25  LIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAP 84

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           +++Y  M+   V  + FT + +L +C       +G  +H    + GF  +V+V N+LV M
Sbjct: 85  IRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSM 144

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAK G +  A  VF ++  R V+SW S+I GY  +G   EA++ FK+M      PD I  
Sbjct: 145 YAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIAL 204

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           + ++   ++   + +G +  H +V++  L+        L  +Y + G +E A    N   
Sbjct: 205 VSVMTAYTNVEDLGQG-KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME 263

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
             + +LW  ++     + N   GE A+K
Sbjct: 264 KPNLILWNAMISG---YANNGYGEEAIK 288


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 206/539 (38%), Positives = 303/539 (56%), Gaps = 22/539 (4%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A+S    L+YA+LL +      +  +N+L+RAF+Q+  P    F+   + ++  S PD F
Sbjct: 38  ALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAFSQTPLPTPP-FHALSLFLSMPSPPDNF 96

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           TF F LK C R K     ++LH  + + G+   + +   L+  Y+  G +  ARS+FD M
Sbjct: 97  TFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDRM 156

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           P RD+VSW S+I         +EA+ L+ERM    V ++  T++ +L +CA  GAL+MG 
Sbjct: 157 PHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGALSMGR 216

Query: 211 FLHRIACEMGFV--ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
            +H    E G        V  ALVDMYAK G + SA  VF  +  RDV  W +MI G   
Sbjct: 217 KVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMISGLAS 276

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           HG   +AI  F  M  +G  PD  T   +L  C + GL+ EG   F  +  RY +KP I+
Sbjct: 277 HGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQ 336

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNL-- 384
           H+GCLVDL  RAG+L++A + +N + P +P  VLWRTL+ +CK+H + +  E  MK+L  
Sbjct: 337 HFGCLVDLLARAGRLKEAEDFVN-AMPIEPDTVLWRTLIWACKVHGDADRAERLMKHLEI 395

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
             + A  +G Y+L + +YA T      A  R+L+   G+   PG S IE+   VH+FV+ 
Sbjct: 396 QDMRADDSGSYILASNVYASTGKWCNKAEVRELMNKKGLVKPPGTSRIEVDGGVHEFVMG 455

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D +HP+A+ I+ +L E++ + +  GY    S V +     E  ++    +HSEKLA+A+G
Sbjct: 456 DYNHPEAEEIFVELAEVVDKIRKEGYDPRVSEVLLEMDDEEKAVQ--LLHHSEKLALAYG 513

Query: 505 LATTPDGTSLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L     G+++RIVKNLRS              Y RD+IVRDR+R+HHF++G CSC DYW
Sbjct: 514 LIRIGHGSTIRIVKNLRSCEDCHEFMKLISKIYKRDIIVRDRIRFHHFKNGECSCKDYW 572


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 206/546 (37%), Positives = 305/546 (55%), Gaps = 32/546 (5%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S  S+LS  +++  +        W+++I  +AQ     +A+  +  M +  L  P+  T 
Sbjct: 315 SFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGL-EPNVVTL 373

Query: 93  TFTLKACERVKALNKCQELHGFVIRS-------GYERCVVVSTNLMRGYAANGVIEAARS 145
              L  C  V AL   ++ H +VI++         E  ++V   L+  YA       ARS
Sbjct: 374 ASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARS 433

Query: 146 VFDNMPERD--LVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCA 201
           +FD++  +D  +V+W  +I  Y Q     +ALKL+ ++  +   L  + FTL C L +CA
Sbjct: 434 IFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACA 493

Query: 202 HVGALNMGIFLHRIACE-MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
            +G L +G  LH  A       E +YVGN L+DMY+K G++D+A  VF  M+ R+V+SW 
Sbjct: 494 RLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWT 553

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           S++ GYG+HGRG+EA+  F QM   GF  D ITFL +L  CSH G+V++G+ YFH MV  
Sbjct: 554 SLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKG 613

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEI 379
           + + PG +HY C+VDL GRAG+L +A+E+I N S     V+W  LL + +IH N+E+GE 
Sbjct: 614 FGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEY 673

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
           A   L +L A + G Y LL+ +YA  +  + VAR R L+K  GI+  PG SWI+      
Sbjct: 674 AASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTT 733

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES--LVAVSGSSSEDFLEKSSAYHSE 497
            F V D+SHP+++ IY  L +++ R K +GY    S  L  V      D L +    HSE
Sbjct: 734 TFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFE----HSE 789

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLA+A+G+ TT  G  +RI KNLR            S+    ++++RD  R+HHF+ G C
Sbjct: 790 KLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSC 849

Query: 546 SCGDYW 551
           SC  YW
Sbjct: 850 SCRSYW 855



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 170/347 (48%), Gaps = 18/347 (5%)

Query: 12  LNKARQAHE---IHGEWLLNSYA----ISVSSSLSYAQLLFNQIQNPQTQAW-NSLIR-A 62
           L  A+ AH+   +HG   + SYA    I   +S     LL   I +  T  W N+LIR +
Sbjct: 43  LINAKLAHQQIFVHGFTEMFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRS 102

Query: 63  FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER 122
               L      FY     +  L  PD +TF F LKAC  + +L     +H  V  +G   
Sbjct: 103 VKLGLLDDTLGFYCQMQRLGWL--PDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGS 160

Query: 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPER---DLVSWNSIISCYTQASFHLEALKLYE 179
            V +  +++  Y   G ++ A  +FD + ER   D+VSWNSI++ Y Q      AL++  
Sbjct: 161 NVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAF 220

Query: 180 RMRFE---DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           RM       +  D  TLV +L +CA V AL  G  +H  +   G V+ V+VGNALV MYA
Sbjct: 221 RMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYA 280

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           KC  ++ A  VF  ++K+DV+SWN+M+ GY   G  D A+S FK M       D IT+  
Sbjct: 281 KCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSA 340

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
           ++ G + +G   E ++ F  M   Y L+P +     L+      G L
Sbjct: 341 VIAGYAQKGHGFEALDVFRQM-QLYGLEPNVVTLASLLSGCASVGAL 386



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 18/183 (9%)

Query: 193 LVCLLSSCAHVGALNMG---IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
           L+ LL  C  +    +    IF+H      GF E     +  V  Y +CG    A  +  
Sbjct: 33  LISLLRQCKTLINAKLAHQQIFVH------GFTEMF---SYAVGAYIECGASAEAVSLLQ 83

Query: 250 RM--RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           R+      V  WN++I      G  D+ + F+ QM   G+ PD  TF  +L  C     +
Sbjct: 84  RLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSL 143

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN---TSSPSDPVLWRTL 364
             G    H +V    L   +     +V +YGR G L+ A ++ +        D V W ++
Sbjct: 144 RHGAS-VHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSI 202

Query: 365 LGS 367
           L +
Sbjct: 203 LAA 205


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 189/441 (42%), Positives = 270/441 (61%), Gaps = 15/441 (3%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           +++H   IR+G+E  V V   L+  YAA G  E+A  +F+ M ER+LV+WNS+I+ Y   
Sbjct: 15  EKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALN 74

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
               EAL L+  M    V  DGFT+V LLS+CA +GAL +G   H    ++G   +++ G
Sbjct: 75  GRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAG 134

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           NAL+D+YAKCG++  A  VF  M ++ V+SW S+IVG  V+G G EA+  FK++   G  
Sbjct: 135 NALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLM 194

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           P  ITF+G+L  CSH G+V+EG +YF  M   Y + P I+HYGC+VDL GRAG +++A E
Sbjct: 195 PSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHE 254

Query: 349 VI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407
            I N     + V+WRTLLG+C IH ++ +GE+A   L+QLE   +GDYVLL+ +YA  + 
Sbjct: 255 FIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQR 314

Query: 408 EEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF 467
              V + R+ +   G+K TPG S +E+ N++H+FV+ D+SHP  + IY KL EI    K 
Sbjct: 315 WSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKL 374

Query: 468 IGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------ 521
            GY     +  V     E+  E + +YHSEK+AIAF L  T  G  +R+VKNLR      
Sbjct: 375 EGYVP--HISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCH 432

Query: 522 ------SIAYSRDLIVRDRVR 536
                 S  + R+++VRDR R
Sbjct: 433 LAIKLISKVFDREIVVRDRSR 453



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 3/232 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  LF  +       WNS+I  +A +  P +A+  +  M +  +  PD FT    L AC 
Sbjct: 49  AHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGV-EPDGFTMVSLLSACA 107

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + AL   +  H ++++ G +  +     L+  YA  G I  A  VFD M E+ +VSW S
Sbjct: 108 ELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTS 167

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEM 219
           +I       F  EAL+L++ +  + +     T V +L +C+H G ++ G  +  R+  E 
Sbjct: 168 LIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEY 227

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHG 270
           G V  +     +VD+  + G +  A      M  + + + W +++    +HG
Sbjct: 228 GIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHG 279


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 199/530 (37%), Positives = 303/530 (57%), Gaps = 40/530 (7%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           W+++I  +AQ     +A+  +  M++   S P++ T    L AC  + AL++  E H + 
Sbjct: 363 WSAVIAGYAQRGYGQEALDTFQQMILYG-SEPNSVTIISLLSACASLGALSQGMETHAYS 421

Query: 116 IRS------------GYERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSI 161
           ++             G    +VV   L+  Y+     +AAR++F+++P  ER++V+W  +
Sbjct: 422 LKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVM 481

Query: 162 ISCYTQASFHLEALKLYERM--RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           I  Y Q     +ALKL+  M  +   V  + +T+ C+L +CAH+ +L MG  +H      
Sbjct: 482 IGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRH 541

Query: 220 GFVES--VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
              ES   +V N L+DMY+KCG++D+A  VF  M KR+ +SW SM+ GYG+HGRG EA+ 
Sbjct: 542 HEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALD 601

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M  AGF PD I+FL LL  CSH G+V++G++YF +M S Y +    +HY C++DL 
Sbjct: 602 IFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLL 661

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            R+G+L+KA + I    P +P   +W  LL +C++H NVE+ E A+  LV ++A + G Y
Sbjct: 662 ARSGRLDKAWKTIQ-EMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSY 720

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
            L++ IYA  +  + VAR R+L+K +GIK  PG SW++       F V D+SHP +  IY
Sbjct: 721 TLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIY 780

Query: 456 RKLEEIMHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
             LE ++ R K +GY  +   +L  V      + L +    HSEKLA+A+GL TT  G  
Sbjct: 781 SLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTE----HSEKLALAYGLLTTSPGCP 836

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +RI KNLR            S     ++IVRD  R+HHF++G CSCG YW
Sbjct: 837 IRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 207/435 (47%), Gaps = 65/435 (14%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQ---AWNSLIRAFAQSLSPLQAIFYYNHMLM-----ASL 84
           S S SL  A L+F++I         +WNS++ A  +  +P  A+  ++ M       A+ 
Sbjct: 195 SRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATN 254

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
            R D  +    L AC  +KAL + +E+H + IR+G      V   L+  YA  G ++ A 
Sbjct: 255 ERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAV 314

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD--------------- 189
           +VF+ M  +D+VSWN++++ YTQ+     A +L++ MR E++ LD               
Sbjct: 315 NVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRG 374

Query: 190 --------------------GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE------ 223
                                 T++ LLS+CA +GAL+ G+  H  + +   +       
Sbjct: 375 YGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFG 434

Query: 224 ------SVYVGNALVDMYAKCGNLDSAFCVFSRM--RKRDVLSWNSMIVGYGVHGRGDEA 275
                  + V NAL+DMY+KC +  +A  +F+ +  R+R+V++W  MI GY  +G  ++A
Sbjct: 435 GDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDA 494

Query: 276 ISFFKQMLMAGF--HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY--G 331
           +  F +M+   +   P++ T   +L  C+H   +  G +  H  V+R++      ++   
Sbjct: 495 LKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQ-IHAYVTRHHEYESSVYFVAN 553

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEIAMKNLVQLEAA 390
           CL+D+Y + G ++ A  V ++    + V W +++    +H R  E  +I  K  +Q    
Sbjct: 554 CLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDK--MQKAGF 611

Query: 391 SAGDYVLLATIYACT 405
              D   L  +YAC+
Sbjct: 612 VPDDISFLVLLYACS 626



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 149/303 (49%), Gaps = 11/303 (3%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WN L+RA  +     +AI     ML A  ++PD FT  + LKAC  + +       HG +
Sbjct: 117 WNLLVRAHIEEGRLDRAIGVSCRMLRAG-TKPDHFTLPYALKACGELPSYRSGSAFHGLI 175

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER---DLVSWNSIISCYTQASFHL 172
             +G+E  V V   L+  Y+ +G +E A  VFD +  +   D++SWNSI++ + + S   
Sbjct: 176 CCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPR 235

Query: 173 EALKLYERM------RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
            AL L+  M      +  +   D  ++V +L +CA + AL     +H  A   G     +
Sbjct: 236 TALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAF 295

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           V NAL+D YAKCG++  A  VF+ M  +DV+SWN+M+ GY   G+   A   FK M    
Sbjct: 296 VCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKEN 355

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
              D IT+  ++ G + +G  +E ++ F  M+  Y  +P       L+      G L + 
Sbjct: 356 IPLDVITWSAVIAGYAQRGYGQEALDTFQQMI-LYGSEPNSVTIISLLSACASLGALSQG 414

Query: 347 LEV 349
           +E 
Sbjct: 415 MET 417



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 111/253 (43%), Gaps = 18/253 (7%)

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           + T ++  Y A G    A SV + +     V WN ++  + +      A+ +  RM    
Sbjct: 85  LGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAG 144

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
              D FTL   L +C  + +   G   H + C  GF  +V+V NALV MY++ G+L+ A 
Sbjct: 145 TKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDAS 204

Query: 246 CVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLM------AGFHPDSITFLG 296
            VF  + ++   DV+SWNS++  +        A+  F +M             D I+ + 
Sbjct: 205 LVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVN 264

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI--KHYGC--LVDLYGRAGKLEKALEVINT 352
           +L  C+    + +  E     +  Y ++ G     + C  L+D Y + G ++ A+ V N 
Sbjct: 265 ILPACASLKALPQTKE-----IHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNV 319

Query: 353 SSPSDPVLWRTLL 365
               D V W  ++
Sbjct: 320 MEFKDVVSWNAMV 332



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 4/150 (2%)

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +V    +G  +V  Y  CG    A  V  R+     + WN ++  +   GR D AI    
Sbjct: 79  YVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSC 138

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML AG  PD  T    L  C        G   FH ++     +  +     LV +Y R+
Sbjct: 139 RMLRAGTKPDHFTLPYALKACGELPSYRSG-SAFHGLICCNGFESNVFVCNALVAMYSRS 197

Query: 341 GKLEKA---LEVINTSSPSDPVLWRTLLGS 367
           G LE A    + I      D + W +++ +
Sbjct: 198 GSLEDASLVFDEITRKGIDDVISWNSIVAA 227


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 207/568 (36%), Positives = 335/568 (58%), Gaps = 30/568 (5%)

Query: 2   GLKKHARY--VGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSL 59
           G+  HA+   VGL    +A  I    L+N Y  S    +  A+ LF+++      +WN++
Sbjct: 66  GMACHAQIIRVGL----RADTITSNMLMNMY--SKCGLVESARKLFDEMPVRSLVSWNTM 119

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           + +  Q+    +A+  +  M     S  + FT +  + AC     + +C++LHGF +++ 
Sbjct: 120 VGSHTQNGDCEKALVLFMQMQKEGTSCSE-FTVSSVVCACAAKCCVFECKQLHGFALKTA 178

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
            +  V V T L+  YA  G+++ A  VF+ MPER  V+W+S+++ Y Q   + EAL L+ 
Sbjct: 179 LDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFH 238

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           R +   +  + FT+   LS+CA   AL  G  +  ++C+ G   +++V ++L+DMYAKCG
Sbjct: 239 RAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCG 298

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            ++ A+ VFS + +++V+ WN+++ G+  H R  EA+ +F++M   G  P+ IT++ +L 
Sbjct: 299 IIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLS 358

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
            CSH GLVE+G +YF +M+  +N+ P + HY C+VD+ GRAG L +A + I+   P D  
Sbjct: 359 ACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFID-RMPFDAT 417

Query: 360 --LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
             +W +LL SC+I+RN+E+ E+A K+L ++E  +AG++VLL+ IYA     E VAR R L
Sbjct: 418 ASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNL 477

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDES 475
           +K +  K   G SWIEI ++VH F+V +++HP    IY KLE+++   K IGY    +  
Sbjct: 478 LKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHD 537

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
           L  V  S  ++ L     +HSEKLA+ FG+   P G  +RI+KNLR            S 
Sbjct: 538 LHDVEESRKQELLR----HHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASS 593

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              R++IVRD  R+HHF++G CSCG++W
Sbjct: 594 ITEREIIVRDTNRFHHFKNGYCSCGEFW 621



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 151/314 (48%), Gaps = 10/314 (3%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L++  R +A  +    H  +IR G     + S  LM  Y+  G++E+AR +FD MP R L
Sbjct: 54  LQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSL 113

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSWN+++  +TQ     +AL L+ +M+ E      FT+  ++ +CA    +     LH  
Sbjct: 114 VSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGF 173

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A +     +V+VG AL+D+YAKCG +  A  VF  M +R  ++W+SM+ GY  +   +EA
Sbjct: 174 ALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEA 233

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH----YG 331
           +  F +    G   +  T    L  C+ +  + EG +     V   + K GI        
Sbjct: 234 LVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQ-----VQAVSCKTGIGSNIFVIS 288

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
            L+D+Y + G +E+A  V ++    + VLW  +L     H       I  + + Q+    
Sbjct: 289 SLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQM-GIC 347

Query: 392 AGDYVLLATIYACT 405
             D   ++ + AC+
Sbjct: 348 PNDITYISVLSACS 361



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 1/171 (0%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL S A   A   G+  H     +G        N L++MY+KCG ++SA  +F  M  R 
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 112

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           ++SWN+M+  +  +G  ++A+  F QM   G      T   ++C C+ +  V E  +  H
Sbjct: 113 LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFE-CKQLH 171

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
               +  L   +     L+D+Y + G ++ A  V         V W +++ 
Sbjct: 172 GFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVA 222


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 316/559 (56%), Gaps = 48/559 (8%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++ YA  +F    NP    + +LI  F  S + L+AI  Y+ ML  S+  PD +     L
Sbjct: 96  AIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESI-LPDNYLMASIL 154

Query: 97  KACERVKALNKCQELHGFVIRSG--------------YERC----------------VVV 126
           KAC    AL + +E+H   ++ G              Y +C                VV 
Sbjct: 155 KACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVA 214

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
           ST ++  Y+  G++E A +VF  +  +D V W ++I  + +      AL+ +  M+ E+V
Sbjct: 215 STVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENV 274

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             + FT+VC+LS+C+ +GAL +G ++H    +     +++VGNAL++MY++CG++D A  
Sbjct: 275 RPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQT 334

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF  M+ RDV+++N+MI G  ++G+  +AI  F+ M+     P ++TF+G+L  CSH GL
Sbjct: 335 VFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGL 394

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLL 365
           V+ G E FH M   Y ++P I+HYGC+VDL GR G+LE+A ++I T     D ++  TLL
Sbjct: 395 VDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLL 454

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
            +CK+H+N+E+GE   K L     A +G YVLL+ +YA +   +  A+ R  +K  G++ 
Sbjct: 455 SACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQK 514

Query: 426 TPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSE 485
            PG S IE+ N++H+F++ D  HP  + IY KLEE+    +  GY  ++ +V       E
Sbjct: 515 EPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGE 574

Query: 486 DFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIAYS-------------RDLIVR 532
              E + A HSE+LAI +GL +T   T +R++KNLR + Y              R ++VR
Sbjct: 575 K--EWALAMHSERLAICYGLISTEPCTMIRVMKNLR-VCYDCHSAIKLIAKITRRKIVVR 631

Query: 533 DRVRYHHFRDGLCSCGDYW 551
           DR R+H+F +G CSCGDYW
Sbjct: 632 DRNRFHYFENGACSCGDYW 650



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 137/296 (46%), Gaps = 31/296 (10%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
           +R + +N+   +H  +IR+G+ +   +   L+R  +    I+ A  +F      ++  + 
Sbjct: 57  QRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYT 116

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++I  +  +  +LEA++LY RM  E +  D + +  +L +C    AL  G  +H  A ++
Sbjct: 117 ALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKL 176

Query: 220 GFVESVYVGNALVDMYAKCGNL------------------------------DSAFCVFS 249
           GF  +  V   ++++Y KCG L                              + A  VFS
Sbjct: 177 GFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFS 236

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
           R+R++D + W +MI G+  +   + A+  F+ M      P+  T + +L  CS  G +E 
Sbjct: 237 RVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEI 296

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           G  + H  + ++ ++  +     L+++Y R G +++A  V +     D + + T++
Sbjct: 297 G-RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMI 351


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 203/568 (35%), Positives = 313/568 (55%), Gaps = 28/568 (4%)

Query: 7   ARYVGLNKARQAH------EIHGEWLLNSYAISV---SSSLSYAQLLFNQIQNPQTQAWN 57
           A+   L+ AR+ H         G+  L++  I +     S+  A  +F++++     +W 
Sbjct: 62  AQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWT 121

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
           SLI  +AQ+  P +AI     ML     +P+ FTF   LKA           ++H   ++
Sbjct: 122 SLIAGYAQNDMPAEAIGLLPGMLKGRF-KPNGFTFASLLKAAGAYADSGIGGQIHALAVK 180

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177
             +   V V + L+  YA  G ++ A +VFD +  ++ VSWN++IS + +      AL +
Sbjct: 181 CDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMV 240

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
           +  M+        FT   + S  A +GAL  G ++H    +     + +VGN ++DMYAK
Sbjct: 241 FAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAK 300

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
            G++  A  VF R+  +D+++WNSM+  +  +G G EA+S F++M  +G + + ITFL +
Sbjct: 301 SGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCI 360

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           L  CSH GLV+EG  YF M +  YNL+P I+HY  +VDL GRAG L  AL  I    P +
Sbjct: 361 LTACSHGGLVKEGKHYFDM-IKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFI-FKMPME 418

Query: 358 PV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415
           P   +W  LL +C++H+N ++G+ A  ++ QL+   +G  VLL  IYA T   +  AR R
Sbjct: 419 PTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVR 478

Query: 416 KLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES 475
           K++K+ G+K  P  SW+EIGN VH FV +D +HP A+ IY+  +EI  + +  GY  D  
Sbjct: 479 KMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMD 538

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
            V +     E   E +  YHSEK+A+AF L   P G ++RI+KN+R            S 
Sbjct: 539 YVLLHVDEQER--EANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISK 596

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + R+++VRD  R+HHF +G CSCGDYW
Sbjct: 597 VFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 3/280 (1%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P    +   + AC + K L+  +++HG +  S +E    +  +L+  Y   G +  A  V
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD M ++D+VSW S+I+ Y Q     EA+ L   M       +GFT   LL +       
Sbjct: 109 FDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            +G  +H +A +  + E VYVG+AL+DMYA+CG +D A  VF ++  ++ +SWN++I G+
Sbjct: 169 GIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV-EYFHMMVSRYNLKP 325
              G G+ A+  F +M   GF     T+  +  G +  G +E+G   + HM+ SR  L  
Sbjct: 229 ARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTA 288

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            + +   ++D+Y ++G +  A +V       D V W ++L
Sbjct: 289 FVGN--TMLDMYAKSGSMIDARKVFERVLNKDLVTWNSML 326


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 181/436 (41%), Positives = 269/436 (61%), Gaps = 15/436 (3%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           R V+  T+++ G+A    I+ AR  FD MPERD VSW ++I  Y + +   E L L+  M
Sbjct: 304 RDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDM 363

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           +  +V  D FT+V +L++CAH+GAL +G +      +       ++GNAL+DMY KCGN+
Sbjct: 364 QMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNV 423

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           + A  +F+ M+K+D  +W +MIVG   +G G+EA++ F  ML A   PD IT++G++C C
Sbjct: 424 EKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCAC 483

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVL 360
           +H GLV +G  +F  M  ++ +KP + HYGC+VDL GRAG L++ALEVI N     + ++
Sbjct: 484 THVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIV 543

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           W +LLG+C++H+NV++ E+A   +++LE  +   YVLL  IYA  K  + +   RK++  
Sbjct: 544 WGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMME 603

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
            GIK  PG S +E+   V++FV  DKSHP +  IY KLE +       GY+ D S V + 
Sbjct: 604 RGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFL- 662

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
               E+  E +   HSEKLAIA+ L ++  G ++RIVKNLR            S  Y+R+
Sbjct: 663 -DVGEEDKETALYMHSEKLAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRE 721

Query: 529 LIVRDRVRYHHFRDGL 544
           LIVRD+ R+HHFR GL
Sbjct: 722 LIVRDKTRFHHFRHGL 737



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 177/366 (48%), Gaps = 37/366 (10%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  + YA+ +F++I  P    WN++I+ +++       +  Y  ML+ ++ +PD FTF F
Sbjct: 82  SGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNI-KPDGFTFPF 140

Query: 95  TLKACERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
            LK   +  AL   + L    +  G+ +  + V    +  ++  G++  AR +FD     
Sbjct: 141 LLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGW 200

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERM--RFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           ++V+WN ++S Y +   + E+ +L+  M  + E V  +  TLV +LS+C+ +  L  G  
Sbjct: 201 EVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKC 260

Query: 212 LHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
           ++    + G VE ++ + NAL+DM+A CG +D+A  VF  M+ RDV+SW S++ G+    
Sbjct: 261 IYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTC 320

Query: 271 RGD-------------------------------EAISFFKQMLMAGFHPDSITFLGLLC 299
           R D                               E ++ F+ M M+   PD  T + +L 
Sbjct: 321 RIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILT 380

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
            C+H G +E G E+    + +  +K        L+D+Y + G +EKA ++ N     D  
Sbjct: 381 ACAHLGALELG-EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKF 439

Query: 360 LWRTLL 365
            W  ++
Sbjct: 440 TWTAMI 445



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 106/234 (45%), Gaps = 3/234 (1%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A+  F+Q+      +W ++I  + +     + +  +  M M+++ +PD FT    L 
Sbjct: 322 IDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNV-KPDEFTMVSILT 380

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  + AL   +    ++ ++  +    +   L+  Y   G +E A+ +F+ M ++D  +
Sbjct: 381 ACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFT 440

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIA 216
           W ++I          EAL ++  M    V  D  T + ++ +C HVG +  G  F   +A
Sbjct: 441 WTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMA 500

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVH 269
            + G   ++     +VD+  + G+L  A  V   M  K + + W S++    VH
Sbjct: 501 VQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVH 554


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 183/477 (38%), Positives = 281/477 (58%), Gaps = 21/477 (4%)

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           FT++  L A   +       E+H  V+++ YER   V T L+  Y   G +E A  VF  
Sbjct: 2   FTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSG 57

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-LNM 208
           + ++D+V+W+++++ Y Q      A+K++  +    +  + FT   +L+ CA   A +  
Sbjct: 58  IDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQ 117

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G   H  A +     S+ V +AL+ MYAK GN++SA  VF R R++D++SWNSMI GY  
Sbjct: 118 GKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQ 177

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           HG+  +A+  FK+M       D +TF+G+   C+H GLVEEG +YF +MV    + P  +
Sbjct: 178 HGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKE 237

Query: 329 HYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
           H  C+VDLY RAG+LEKA++VI N  +P+   +WRT+L +C++H+  E+G +A + ++ +
Sbjct: 238 HNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAM 297

Query: 388 EAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKS 447
           +   +  YVLL+ +YA + D +  A+ RKL+    +K  PG+SWIE+ N+ + F+  D+S
Sbjct: 298 KPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRS 357

Query: 448 HPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLAT 507
           HP  D IY KLE++  R K +GY  D S V       ++  E   A HSE+LAIAFGL  
Sbjct: 358 HPLKDQIYMKLEDLSTRLKDLGYEPDTSYVL--QDIDDEHKEAVLAQHSERLAIAFGLIA 415

Query: 508 TPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHF-RDGLCSCGDYW 551
           TP G+ L I+KNLR            +    R+++VRD  R+HHF  DG+CSCGD+W
Sbjct: 416 TPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 472



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 133/271 (49%), Gaps = 8/271 (2%)

Query: 6   HARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
           HA+ V  N  R +    G  LL++Y       +  A  +F+ I +    AW++++  +AQ
Sbjct: 20  HAQVVKTNYERSS--TVGTALLDAYV--KLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQ 75

Query: 66  SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA-LNKCQELHGFVIRSGYERCV 124
           +     AI  +  +    + +P+ FTF+  L  C    A + + ++ HGF I+S  +  +
Sbjct: 76  TGETEAAIKMFGELTKGGI-KPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSL 134

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
            VS+ L+  YA  G IE+A  VF    E+DLVSWNS+IS Y Q    ++AL +++ M+  
Sbjct: 135 CVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR 194

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA-LVDMYAKCGNLDS 243
            V +DG T + + ++C H G +  G     I      +      N+ +VD+Y++ G L+ 
Sbjct: 195 KVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 254

Query: 244 AFCVFSRM-RKRDVLSWNSMIVGYGVHGRGD 273
           A  V   M        W +++    VH + +
Sbjct: 255 AMKVIENMPNPAGSTIWRTILAACRVHKKTE 285


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 207/568 (36%), Positives = 335/568 (58%), Gaps = 30/568 (5%)

Query: 2   GLKKHARY--VGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSL 59
           G+  HA+   VGL    +A  I    L+N Y  S    +  A+ LF+++      +WN++
Sbjct: 39  GMACHAQIIRVGL----RADTITSNMLMNMY--SKCGLVESARKLFDEMPVRSLVSWNTM 92

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           + +  Q+    +A+  +  M     S  + FT +  + AC     + +C++LHGF +++ 
Sbjct: 93  VGSHTQNGDCEKALVLFMQMQKEGTSCSE-FTVSSVVCACAAKCCVFECKQLHGFALKTA 151

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
            +  V V T L+  YA  G+++ A  VF+ MPER  V+W+S+++ Y Q   + EAL L+ 
Sbjct: 152 LDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFH 211

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           R +   +  + FT+   LS+CA   AL  G  +  ++C+ G   +++V ++L+DMYAKCG
Sbjct: 212 RAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCG 271

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            ++ A+ VFS + +++V+ WN+++ G+  H R  EA+ +F++M   G  P+ IT++ +L 
Sbjct: 272 IIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLS 331

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
            CSH GLVE+G +YF +M+  +N+ P + HY C+VD+ GRAG L +A + I+   P D  
Sbjct: 332 ACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFID-RMPFDAT 390

Query: 360 --LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
             +W +LL SC+I+RN+E+ E+A K+L ++E  +AG++VLL+ IYA     E VAR R L
Sbjct: 391 ASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNL 450

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDES 475
           +K +  K   G SWIEI ++VH F+V +++HP    IY KLE+++   K IGY    +  
Sbjct: 451 LKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHD 510

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
           L  V  S  ++ L     +HSEKLA+ FG+   P G  +RI+KNLR            S 
Sbjct: 511 LHDVEESRKQELLR----HHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASS 566

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              R++IVRD  R+HHF++G CSCG++W
Sbjct: 567 ITEREIIVRDTNRFHHFKNGYCSCGEFW 594



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 151/314 (48%), Gaps = 10/314 (3%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L++  R +A  +    H  +IR G     + S  LM  Y+  G++E+AR +FD MP R L
Sbjct: 27  LQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSL 86

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSWN+++  +TQ     +AL L+ +M+ E      FT+  ++ +CA    +     LH  
Sbjct: 87  VSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGF 146

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A +     +V+VG AL+D+YAKCG +  A  VF  M +R  ++W+SM+ GY  +   +EA
Sbjct: 147 ALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEA 206

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH----YG 331
           +  F +    G   +  T    L  C+ +  + EG +     V   + K GI        
Sbjct: 207 LVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQ-----VQAVSCKTGIGSNIFVIS 261

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
            L+D+Y + G +E+A  V ++    + VLW  +L     H       I  + + Q+    
Sbjct: 262 SLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQM-GIC 320

Query: 392 AGDYVLLATIYACT 405
             D   ++ + AC+
Sbjct: 321 PNDITYISVLSACS 334



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 1/171 (0%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL S A   A   G+  H     +G        N L++MY+KCG ++SA  +F  M  R 
Sbjct: 26  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 85

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           ++SWN+M+  +  +G  ++A+  F QM   G      T   ++C C+ +  V E  +  H
Sbjct: 86  LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFE-CKQLH 144

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
               +  L   +     L+D+Y + G ++ A  V         V W +++ 
Sbjct: 145 GFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVA 195


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 203/530 (38%), Positives = 306/530 (57%), Gaps = 17/530 (3%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSP-LQAIFYYNHMLMASLSRPDT 89
           A+S    + YA+ LF+QIQ P   +WNS+IR  +QS +P  + +  +  M+      P+T
Sbjct: 102 ALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNT 161

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           FT  F LKAC  V AL + Q++H  V++SG+     V T L+  YA    I  A  VFD 
Sbjct: 162 FTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDE 221

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           + +R+LV+W+++IS Y +     EAL L+  M+   V  D  T+V ++S+CA  GAL+ G
Sbjct: 222 ITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG 281

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
            ++H    +      + +  ALV+MYAKCG ++ A  VF  M  +D  +W+SMIVG  ++
Sbjct: 282 KWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAIN 341

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G  ++A+  F +M  A   P+ +TF+G+L  C+H GLV EG  Y+  M+  + + P ++ 
Sbjct: 342 GLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMEL 400

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
           YGC+VDL  RA  +E A  ++ T   S +PV+WRTLL  CK  +N++  E+  + L++LE
Sbjct: 401 YGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELE 460

Query: 389 AASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSH 448
             +A +Y+LL+ +YA     E +++ RK +K  GIK  PG S IE+   VH+FV+ D SH
Sbjct: 461 PHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSH 520

Query: 449 PDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
           P+A  +   L +I  R   +G+    S V  +    E   E +   HSE+LAIA+GL  T
Sbjct: 521 PEAMEVREILRDISKRVHAVGHQPGISDVLHNVVDEEK--ENALCEHSERLAIAYGLLKT 578

Query: 509 PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
               ++RIVKNLR            S  Y R++IVRDRVR+H F +G CS
Sbjct: 579 KTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCS 628


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 203/533 (38%), Positives = 303/533 (56%), Gaps = 23/533 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQ---SLSPLQAIFYYNHMLMASLSRPDTFTFT 93
           SL  A+ +F+++       W S+I  ++Q   + S   A+  +  M+   L RP+ F  +
Sbjct: 141 SLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGL-RPNEFALS 199

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
             +K C  + +    +++HG   + G++  V V ++L+  YA  G +  +R VFD +  +
Sbjct: 200 SLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESK 259

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           + VSWN++IS + +     EAL L+ +M+ E  G   FT   LL S +  G+L  G +LH
Sbjct: 260 NEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLH 319

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
               + G     YVGN L+ MYAK GN+  A  VF R+ K DV+S NSM++GY  HG G 
Sbjct: 320 AHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGK 379

Query: 274 EAISFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           EA+  F++M++     P+ ITFL +L  CSH GL++EG+ YF +M  +Y L+P + HY  
Sbjct: 380 EAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELM-KKYGLEPKLSHYTT 438

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           +VDL+GRAG L++A   I    P +P   +W  LLG+ K+H+N E+G  A + +++L+  
Sbjct: 439 VVDLFGRAGLLDQAKSFIE-EMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPF 497

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
             G + LL+ IYA     + VA+ RK +K +G+K  P  SW+EI N VH F  +D SHP 
Sbjct: 498 YPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQ 557

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
            + +Y   E +  + K IGY  D S V V     E   E +  YHSEKLA+AF L  T  
Sbjct: 558 KNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEK--ELNLQYHSEKLALAFALLNTKP 615

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G+ +RI+KN+R            S+   R++IVRD  R+HHFRDG CSC DYW
Sbjct: 616 GSVIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 168/329 (51%), Gaps = 16/329 (4%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD   +   LK C  +  L + + +H  ++ S +   +V+  +++  YA  G +E AR 
Sbjct: 88  EPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQ 147

Query: 146 VFDNMPERDLVSWNSIISCYTQ---ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           VFD M  +D+V+W S+I+ Y+Q   AS    AL L+  M  + +  + F L  L+  C  
Sbjct: 148 VFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGF 207

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +G+   G  +H    + GF E+V+VG++LVDMYA+CG L  +  VF  +  ++ +SWN++
Sbjct: 208 LGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNAL 267

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV-EYFHMMVSRY 321
           I G+   G G+EA+  F +M   GF     T+  LLC  S  G +E+G   + HMM S  
Sbjct: 268 ISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGK 327

Query: 322 NLKPGIKHYG-CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH----RNVEI 376
            L   + + G  L+ +Y ++G +  A +V +     D V   ++L     H      VE+
Sbjct: 328 KL---VGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVEL 384

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACT 405
            E  M   V++E     D   L+ + AC+
Sbjct: 385 FE-EMMLWVEIE---PNDITFLSVLTACS 409



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 7/233 (3%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL  C  +G L  G  +H       F   + + N+++ MYAKCG+L+ A  VF  M  +D
Sbjct: 97  LLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKD 156

Query: 256 VLSWNSMIVGYGVHGRGDEAIS---FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           V++W SMI GY   G    A +    F +M+  G  P+      L+  C   G   +G +
Sbjct: 157 VVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQ 216

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372
             H    +Y  +  +     LVD+Y R G+L ++  V +     + V W  L+      R
Sbjct: 217 -IHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISG--FAR 273

Query: 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
             E GE A+   V+++    G      +   C+    G     K + ++ +K+
Sbjct: 274 KGE-GEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKS 325



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 3/141 (2%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA   S ++  A+ +F+++      + NS++  +AQ     +A+  +  M++ 
Sbjct: 334 GNTLLHMYA--KSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLW 391

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
               P+  TF   L AC     L++       + + G E  +   T ++  +   G+++ 
Sbjct: 392 VEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQ 451

Query: 143 ARSVFDNMP-ERDLVSWNSII 162
           A+S  + MP E +   W +++
Sbjct: 452 AKSFIEEMPIEPNATIWGALL 472


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 200/543 (36%), Positives = 305/543 (56%), Gaps = 21/543 (3%)

Query: 25  WLLNS--YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           +LLNS  +      ++S A+ +F+++ +    +W  LI  +AQ+  P +AI     ML A
Sbjct: 96  FLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRA 155

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
              RP+ FTFT  LKA       +  +++H   ++  ++  V V + L+  YA    ++ 
Sbjct: 156 RF-RPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDM 214

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VFD +  ++ VSWN++I+ + + +     L  +  M+    G   FT   + S+ A 
Sbjct: 215 AIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFAR 274

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +GAL  G ++H    + G   + +VGN ++ MYAK G++  A  VF RM KRD+++WN+M
Sbjct: 275 IGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTM 334

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           +     +G G EA++ F+++   G   + ITFL +L  CSH GLV+EG  YF MM   YN
Sbjct: 335 LTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMM-KDYN 393

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIA 380
           ++P I HY   VDL GRAG L++AL +     P +P   +W  LLG+C++H+N ++G+ A
Sbjct: 394 VQPEIDHYVSFVDLLGRAGLLKEAL-IFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYA 452

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
             ++ +L+    G  VLL  IYA T      AR RK++K+ G+K  P  SW++I N VH 
Sbjct: 453 ADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHM 512

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           FV DD +HP +  IYR  EEI  R K  GY  + + V +  +  E   E    YHSEK+A
Sbjct: 513 FVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQER--ETKLKYHSEKIA 570

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           +AF L   P G S+RI+KN+R            S  + R+++VRD  R+HHF +G CSCG
Sbjct: 571 LAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCG 630

Query: 549 DYW 551
           DYW
Sbjct: 631 DYW 633



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 140/288 (48%), Gaps = 3/288 (1%)

Query: 79  MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
           +L A    P    +   + AC + K L   + +H  + RS       +  +L+  Y   G
Sbjct: 50  LLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCG 109

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
            +  AR VFD MP RD+VSW  +I+ Y Q     EA+ L   M       +GFT   LL 
Sbjct: 110 AVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLK 169

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +    G  ++G  +H +A +  + E VYVG+AL+DMYA+C  +D A  VF R+  ++ +S
Sbjct: 170 ATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVS 229

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV-EYFHMM 317
           WN++I G+     G+  +  F +M   GF     T+  +    +  G +E+G   + H++
Sbjct: 230 WNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLI 289

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            S   L   + +   ++ +Y ++G +  A +V +     D V W T+L
Sbjct: 290 KSGQKLTAFVGN--TMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTML 335


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  357 bits (917), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 200/572 (34%), Positives = 299/572 (52%), Gaps = 62/572 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A+  F +I+      WN ++  +       +A+  +  M++  + +P++ T    + 
Sbjct: 162 MDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGV-KPNSITIASAVS 220

Query: 98  ACERVKALNKCQELHGFVIR-SGYERCVVVSTNLMRGYAANGVIEAAR------------ 144
           AC  +  L   +E+HG+ I+    +  ++V  +L+  YA    +E AR            
Sbjct: 221 ACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLV 280

Query: 145 -------------------------------SVFDNMPERDLVSWNSIISCYTQASFHLE 173
                                          SVF  +  RD+V WNSIIS   Q+   + 
Sbjct: 281 SWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVN 340

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           AL L   M   +V ++  T+V  L +C+ + AL  G  +H+     G     ++ N+L+D
Sbjct: 341 ALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLID 400

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY +CG++  +  +F  M +RD++SWN MI  YG+HG G +A++ F+Q    G  P+ IT
Sbjct: 401 MYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHIT 460

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F  LL  CSH GL+EEG +YF MM + Y + P ++ Y C+VDL  RAG+  + LE I   
Sbjct: 461 FTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIE-K 519

Query: 354 SPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
            P +P   +W +LLG+C+IH N ++ E A + L +LE  S+G+YVL+A IY+     E  
Sbjct: 520 MPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDA 579

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
           A+ R L+K  G+   PG SWIE+  ++H FVV D SHP  + I  K+E +    K IGY 
Sbjct: 580 AKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYV 639

Query: 472 KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
            D + V       ED  E S   HSEK+A+AFGL +T  GT LRI+KNLR          
Sbjct: 640 PDTNFVL--QDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATK 697

Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             S    RD+I+RD  R+HHF DG+CSCGDYW
Sbjct: 698 FISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 2/285 (0%)

Query: 84  LSRPDTFT--FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
           L+ PD     +   L+ C ++  L    ++H  ++ +G + C  + + L+  Y   G +E
Sbjct: 3   LTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVE 62

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            AR +FD M ER++ SW +I+  Y     + E +KL+  M  E V  D F    +  +C+
Sbjct: 63  DARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACS 122

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
            +    +G  ++     +GF  +  V  +++DM+ KCG +D A   F  +  +DV  WN 
Sbjct: 123 ELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNI 182

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           M+ GY   G   +A++ F++M++ G  P+SIT    +  C++  L+  G E     +   
Sbjct: 183 MVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVE 242

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            L   +     LVD Y +   +E A         +D V W  +L 
Sbjct: 243 ELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLA 287



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 183/415 (44%), Gaps = 50/415 (12%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           +G + HA+ V         E  G  LL  Y    +  +  A+ +F+++      +W +++
Sbjct: 28  LGFQVHAQLV--VNGVDVCEFLGSRLLEVYC--QTGCVEDARRMFDKMSERNVFSWTAIM 83

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             +   L   +      ++++    RPD F F    KAC  +K     ++++ +++  G+
Sbjct: 84  EMYC-GLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGF 142

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           E    V  +++  +   G ++ AR  F+ +  +D+  WN ++S YT      +AL ++ +
Sbjct: 143 EGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRK 202

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKCG 239
           M  E V  +  T+   +S+C ++  L  G  +H    ++  ++S + VGN+LVD YAKC 
Sbjct: 203 MVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCR 262

Query: 240 NLDSAFCVFSRMRKRDVLSWNSM--IVGYGVHGRGDEAISFFKQMLMA------------ 285
           +++ A   F  +++ D++SWN+M  + G+  +G G  A+ FF++M +A            
Sbjct: 263 SVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDV 322

Query: 286 -----------------------------GFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
                                            +++T +  L  CS    + +G E  H 
Sbjct: 323 VVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE-IHQ 381

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            + R  L         L+D+YGR G ++K+  + +     D V W  ++    +H
Sbjct: 382 FIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMH 436


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  357 bits (917), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 196/529 (37%), Positives = 299/529 (56%), Gaps = 19/529 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++S A+ +F+++ +    +W  LI  +AQ+  P +AI     ML A   RP+ FTFT  L
Sbjct: 7   AVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARF-RPNGFTFTSLL 65

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           KA       +  +++H   ++  ++  V V + L+  YA    ++ A  VFD +  ++ V
Sbjct: 66  KATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEV 125

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I+ + + +     L  +  M+    G   FT   + S+ A +GAL  G ++H   
Sbjct: 126 SWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHL 185

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + G   + +VGN ++ MYAK G++  A  VF RM KRD+++WN+M+     +G G EA+
Sbjct: 186 IKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAV 245

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           + F+++   G   + ITFL +L  CSH GLV+EG  YF MM   YN++P I HY   VDL
Sbjct: 246 AHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMM-KDYNVQPEIDHYVSFVDL 304

Query: 337 YGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG L++AL +     P +P   +W  LLG+C++H+N ++G+ A  ++ +L+    G 
Sbjct: 305 LGRAGLLKEAL-IFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGP 363

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
            VLL  IYA T      AR RK++K+ G+K  P  SW++I N VH FV DD +HP +  I
Sbjct: 364 PVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDI 423

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           YR  EEI  R K  GY  + + V +  +  E   E    YHSEK+A+AF L   P G S+
Sbjct: 424 YRMWEEINMRIKKAGYVPNTAHVLLHINEQER--ETKLKYHSEKIALAFALINMPAGASI 481

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI+KN+R            S  + R+++VRD  R+HHF +G CSCGDYW
Sbjct: 482 RIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 116/232 (50%), Gaps = 1/232 (0%)

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           Y   G +  AR VFD MP RD+VSW  +I+ Y Q     EA+ L   M       +GFT 
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 61

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
             LL +    G  ++G  +H +A +  + E VYVG+AL+DMYA+C  +D A  VF R+  
Sbjct: 62  TSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVS 121

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           ++ +SWN++I G+     G+  +  F +M   GF     T+  +    +  G +E+G  +
Sbjct: 122 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG-RW 180

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            H  + +   K        ++ +Y ++G +  A +V +     D V W T+L
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTML 232



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY KCG +  A  VF +M  RDV+SW  +I GY  +    EAI     ML A F P+  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F  LL      G    G E  H +  +YN    +     L+D+Y R  +++ A+ V +  
Sbjct: 61  FTSLLKATGACGGCSIG-EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 119

Query: 354 SPSDPVLWRTLLG 366
              + V W  L+ 
Sbjct: 120 VSKNEVSWNALIA 132


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 194/525 (36%), Positives = 310/525 (59%), Gaps = 19/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+++F  + +    +W S+I  + Q+  P++A+  +  M   ++ +PD       L+A  
Sbjct: 223 ARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNV-KPDWIALVSVLRAYT 281

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            V+ L + + +HG V++ G E    +  +L   YA  G +  ARS FD M   +++ WN+
Sbjct: 282 DVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNA 341

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y +  +  EA+ L++ M  +++  D  T+   + +CA VG+L++  ++     +  
Sbjct: 342 MISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTE 401

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +   V+V  AL+DM+AKCG++D A  VF R   +DV+ W++MIVGYG+HGRG +AI  F 
Sbjct: 402 YRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFY 461

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            M  AG  P+ +TF+GLL  C+H GLVEEG E FH M   Y ++   +HY C+VDL GR+
Sbjct: 462 AMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRS 520

Query: 341 GKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G L +A + I T+ P +P   +W  LLG+CKI+R+V +GE A + L  L+  + G YV L
Sbjct: 521 GHLNEAYDFI-TTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQL 579

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + +YA ++  + VA+ R L++  G+    G+S IEI  ++  F V DKSHP    I+ +L
Sbjct: 580 SNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEEL 639

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           E +  R K  G+     + +V    +++  E++   HSE+LAIA+GL +T  GT+LRI K
Sbjct: 640 ESLERRLKEAGFIP--HIESVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITK 697

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S   +R+++VRD  R+HHF++G+CSC DYW
Sbjct: 698 NLRACINCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 186/378 (49%), Gaps = 10/378 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           + YA+ +F++   P    WN++IR ++       AI  Y+ M  AS   PD FT    LK
Sbjct: 119 IGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRM-QASGVNPDGFTLPCVLK 177

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  V  L   + +HG + R G+E  V V   L+  YA  G +E AR VF+ + +R++VS
Sbjct: 178 ACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVS 237

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W S+IS Y Q    +EAL+++ +MR  +V  D   LV +L +   V  L  G  +H    
Sbjct: 238 WTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVV 297

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +MG      +  +L  MYAKCG +  A   F +M   +V+ WN+MI GY  +G  +EA+ 
Sbjct: 298 KMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVG 357

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++M+      DSIT    +  C+  G ++   ++    +++   +  +     L+D++
Sbjct: 358 LFQEMISKNIRTDSITVRSAILACAQVGSLDLA-KWMGDYINKTEYRNDVFVNTALIDMF 416

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDY 395
            + G ++ A EV + +   D V+W  ++    +H     G+ A+     ++ A     D 
Sbjct: 417 AKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGR---GQDAIDLFYAMKQAGVCPNDV 473

Query: 396 VLLATIYACTKD---EEG 410
             +  + AC      EEG
Sbjct: 474 TFVGLLTACNHSGLVEEG 491



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 129/257 (50%), Gaps = 1/257 (0%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
            ++H  ++ SG      + T  +      G I  AR VFD  PE  +  WN+II  Y+  
Sbjct: 88  NQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSH 147

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
           +F  +A+++Y RM+   V  DGFTL C+L +C+ V  L +G  +H     +GF   V+V 
Sbjct: 148 NFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQ 207

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N LV +YAKCG ++ A  VF  +  R+++SW SMI GYG +G   EA+  F QM      
Sbjct: 208 NGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVK 267

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           PD I  + +L   +    +E+G +  H  V +  L+        L  +Y + G++  A  
Sbjct: 268 PDWIALVSVLRAYTDVEDLEQG-KSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARS 326

Query: 349 VINTSSPSDPVLWRTLL 365
             +     + ++W  ++
Sbjct: 327 FFDQMEIPNVMMWNAMI 343


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 201/552 (36%), Positives = 302/552 (54%), Gaps = 49/552 (8%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQS-----------LSPLQAIFYYNHMLMASLSRPDT 89
           A+  F+ ++     +WN++I  +AQ+            SP+  +F +  M+   +     
Sbjct: 233 ARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQN--- 289

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGY---ER------------CVVVST--NLMR 132
                  +A E    + +  E+    + +GY   ER            C  VST   ++ 
Sbjct: 290 ---RMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMIT 346

Query: 133 GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192
           GYA  G I  A+++FD MP+RD VSW ++I+ Y+Q+    EAL+L+  M  E   L+  +
Sbjct: 347 GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSS 406

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
               LS+CA V AL +G  LH    + G+    +VGNAL+ MY KCG+++ A  +F  M 
Sbjct: 407 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 466

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
            +D++SWN+MI GY  HG G+EA+ FF+ M   G  PD  T + +L  CSH GLV++G +
Sbjct: 467 GKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 526

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIH 371
           YFH M   Y ++P  +HY C+VDL GRAG LE+A  ++ N     D  +W TLLG+ ++H
Sbjct: 527 YFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVH 586

Query: 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSW 431
            N E+ E A   +  +E  ++G YVLL+ +YA +     V + R  ++  G+K  PG+SW
Sbjct: 587 GNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSW 646

Query: 432 IEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKS 491
           IEI N+ H F V D+ HP+ D I+  LE++  R K  GY    S+V       E   E+ 
Sbjct: 647 IEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEK--ERM 704

Query: 492 SAYHSEKLAIAFGLATTPDGTSLRIVKNLR-------SIAY-----SRDLIVRDRVRYHH 539
             YHSE+LA+A+G+     G  +R++KNLR       +I Y      R +I+RD  R+HH
Sbjct: 705 VRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHH 764

Query: 540 FRDGLCSCGDYW 551
           F+DG CSCGDYW
Sbjct: 765 FKDGSCSCGDYW 776



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 152/349 (43%), Gaps = 31/349 (8%)

Query: 23  GEWLLNSYAISVSSSL-----SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYN 77
           G+  +  + +++SS +     S A  +F ++    + ++N++I  + ++       F   
Sbjct: 55  GDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRN-----GEFELA 109

Query: 78  HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
            ML   +   D  ++   +K   R + L K +EL         ER V     ++ GYA N
Sbjct: 110 RMLFDEMPERDLVSWNVMIKGYVRNRNLGKAREL----FERMPERDVCSWNTILSGYAQN 165

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G ++ AR VFD MPE++ VSWN+++S Y Q S   EA  L+     E+  L  +   CLL
Sbjct: 166 GCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSR--ENWALVSWN--CLL 221

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
                       I   R   +   V  V   N ++  YA+ G +D A  +F      DV 
Sbjct: 222 GGFVK----KKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVF 277

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +W +M+ GY  +   +EA   F +M       + +++  +L G      VE   E F +M
Sbjct: 278 TWTAMVSGYIQNRMVEEARELFDRMP----ERNEVSWNAMLAGYVQGERVEMAKELFDVM 333

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
             R      +  +  ++  Y + GK+ +A  + +     DPV W  ++ 
Sbjct: 334 PCR-----NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIA 377


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 204/496 (41%), Positives = 289/496 (58%), Gaps = 31/496 (6%)

Query: 81  MASLSRP-DTFTFTFTLKACERVKALN-----KCQELHGFVIRSGYERCVVVSTNLMRGY 134
           M  L  P D++++T  LKAC  V A +     + +E+H   IR GY     V+T L+  Y
Sbjct: 165 MGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCY 224

Query: 135 AANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFT 192
           A  G++  A SVF  MPER++VSW+++I CY +     +A++L++ M   D  L  +  T
Sbjct: 225 AKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSIT 284

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM- 251
           +V +L++CA V AL+ G  LH      GF   V V NAL+ MY +CG L+    +F  + 
Sbjct: 285 IVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIG 344

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
            +RDV+SWNS+I GYG+HG G EA+  F++M+  GF P  ITF+ +L  CSH GLV EG 
Sbjct: 345 HRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEGK 404

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS--SPSDPVLWRTLLGSCK 369
             F  MV  Y + P  +HY C+VDL GRAG+L++A+E+I +    PS P +W  LLG+C+
Sbjct: 405 MLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPS-PQVWGALLGACR 462

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           IH +VE  EIA  +L  LE  +AG+YVLLA IYA  K    V   ++L++ + ++   G 
Sbjct: 463 IHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHALEKVTGC 522

Query: 430 SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA--VSGSSSEDF 487
           SWIE+  ++H F   D  +P  + +   + E + + K  GY  D  +V   + G   E  
Sbjct: 523 SWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEGEEKERI 582

Query: 488 LEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRV 535
           L      HSEKLA+AFGL  T  G  +RI KNLR            S    R+++VRD  
Sbjct: 583 L----IGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVN 638

Query: 536 RYHHFRDGLCSCGDYW 551
           R+HHFRDG+CSCGDYW
Sbjct: 639 RFHHFRDGVCSCGDYW 654



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 9/254 (3%)

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           +ST L+  YAA G + AAR VFD  P +++  WN+++     A    EAL     M    
Sbjct: 110 LSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLADMGRLG 169

Query: 186 VGLDGFTLV-----CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           V +D ++       C+  S +H  A      +H  A   G+    +V   L+D YAK G 
Sbjct: 170 VPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCYAKLGI 229

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM--AGFHPDSITFLGLL 298
           +  A  VF+ M +R+V+SW++MI  Y  + R  +AI  FK M+   A   P+SIT + +L
Sbjct: 230 VRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVL 289

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSD 357
             C+    +  G +  H  + R      +     L+ +Y R G LE    +        D
Sbjct: 290 NACAGVNALSHG-KLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRD 348

Query: 358 PVLWRTLLGSCKIH 371
            V W +L+    +H
Sbjct: 349 VVSWNSLISGYGMH 362



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 4/157 (2%)

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
           R+  +  F    ++   L++ YA  G L +A  VF     +++  WN+++    +   GD
Sbjct: 97  RLEADPVFRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGD 156

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGC----SHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           EA++    M   G   DS ++   L  C    +        V   H    R         
Sbjct: 157 EALARLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHV 216

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
              L+D Y + G +  A  V       + V W  ++G
Sbjct: 217 ATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIG 253


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 210/529 (39%), Positives = 297/529 (56%), Gaps = 17/529 (3%)

Query: 38  LSYAQLLFNQIQNP-QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +S A+ LF+++ N      WN LIRA+A+      AI  Y  ML      PD FT+   L
Sbjct: 114 VSVARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVL 173

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           KAC  +  L   +E+H  V+R+ +   V V   L+  YA  G ++ A +VFD+   RD V
Sbjct: 174 KACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAV 233

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            WNS+I+   Q     EAL L   M  E +     TLV  +S+ A  GAL  G  LH   
Sbjct: 234 VWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYG 293

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              GF     +  +L+DMYAK G +  A  +F ++  R+++SWN+MI G+G+HG  D A 
Sbjct: 294 WRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHAC 353

Query: 277 SFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
             F++M   A   PD ITF+G+L  C+H G+V+E  E F +MV+ Y++KP ++HY CLVD
Sbjct: 354 ELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVD 413

Query: 336 LYGRAGKLEKALEVINTS-SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           + G +G+ ++A +VI       D  +W  LL  CKIH+NVE+ E+A+  L++LE   AG+
Sbjct: 414 VLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGN 473

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ IYA +   E  AR RKL+ + G+K     SWIE+  + H F+V D SHP +D I
Sbjct: 474 YVLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEI 533

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y +LE +       GY  D +  +V  +  +D        HSE+LAIAFGL +TP GT L
Sbjct: 534 YEELERLEGLISQTGYVPDTT--SVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKL 591

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + KNLR            S    R++I+RD  RYHHF +G CSC D+W
Sbjct: 592 LVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 3/283 (1%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
            +   L++C   +A+   ++LH  ++ SG     V++T L+  YA+ G++  AR +FD M
Sbjct: 65  NYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEM 124

Query: 151 PER-DLVSWNSIISCYTQASFHLEALKLY-ERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
           P + ++  WN +I  Y +      A++LY E +    +  D FT   +L +CA +  L  
Sbjct: 125 PNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGA 184

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G  +H       +   V+V   L+DMYAKCG +D A+ VF     RD + WNSMI   G 
Sbjct: 185 GREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQ 244

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +GR  EA++  + M   G  P  +T +  +   +  G +  G E  H    R       K
Sbjct: 245 NGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRE-LHGYGWRRGFGSQDK 303

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
               L+D+Y ++G +  A  + +     + + W  ++    +H
Sbjct: 304 LKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMH 346


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 197/530 (37%), Positives = 305/530 (57%), Gaps = 20/530 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F+++      +W ++I A++Q     +A+  +  ML +  + P+ FTF   L 
Sbjct: 141 LGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSD-TEPNHFTFATILT 199

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +C         +++H   I+  YE  + V ++L+  YA +G I  A  VF  +PERD+V+
Sbjct: 200 SCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVA 259

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
             +IIS Y Q     EALKL+ +++ E +  +  T   +L++ + + ALN G  +H    
Sbjct: 260 CTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVL 319

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             G    V + N+L+DMY+KCGN+  A  +F  M +R  +SWN+M+VGY  HG   E + 
Sbjct: 320 RSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLE 379

Query: 278 FFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS-RYNLKPGIKHYGCLVD 335
            FK M       PDSIT+L +L GCSH  L + G+E F+ MV+ +  ++P I HYGC+VD
Sbjct: 380 LFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVD 439

Query: 336 LYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L GRAG++E+A + I    P  P   +W +LLGSC++H +VEIG I  + L++LE  +AG
Sbjct: 440 LLGRAGRVEEAFDFIK-KMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAG 498

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
           +YV+L+ +YA     E +   R L++   +   PG SW+E+   VH F   D +HP  + 
Sbjct: 499 NYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREE 558

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           + +K++E+  + K  GY  D S V       E+  EK    HSEKLA+AFGL  TP+GT+
Sbjct: 559 VAKKVKELSIKFKEDGYVPDLSCVLY--DVDEEQKEKVLLGHSEKLALAFGLIATPEGTT 616

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R++KNLR            S  Y+R +I+RD+ R+H+   G+CSCGDYW
Sbjct: 617 IRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 144/286 (50%), Gaps = 2/286 (0%)

Query: 81  MASLSRPDTFT-FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           MA L R   F  +   L  C   +A+ + Q +H  +I++ Y   V + T L+  Y     
Sbjct: 81  MAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDC 140

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           +  AR +FD MP++++VSW ++IS Y+Q  F  EAL L+  M   D   + FT   +L+S
Sbjct: 141 LGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTS 200

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           C        G  +H IA +  +   ++VG++L+DMYAK G +  A  VF  + +RDV++ 
Sbjct: 201 CYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVAC 260

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
            ++I GY   G  +EA+  F+Q+ + G + +S+T+  +L   S    +  G +  H  V 
Sbjct: 261 TAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQ-VHSHVL 319

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           R      +     L+D+Y + G +  A  + ++      + W  +L
Sbjct: 320 RSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAML 365


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 194/531 (36%), Positives = 300/531 (56%), Gaps = 21/531 (3%)

Query: 36  SSLSYAQLLFNQIQNPQTQA--WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93
           S+++ A+ +F++  + +  A  +N+LI  ++ +     A+  +  M    +S  +  T  
Sbjct: 105 STIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSV-NAVTML 163

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
             +  C     L     LH   +R G +  + V   L+  Y   G ++ AR +FD MPE+
Sbjct: 164 GLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEK 223

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
            L++WN++IS Y Q       L LY +M F  +  D  TLV +LSSCAH+GA   G  + 
Sbjct: 224 GLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVE 283

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
           +     GF  + ++ NAL++MYA+CGNL  A  +F  M +++V+SW ++I GYG+HG+G+
Sbjct: 284 QRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGE 343

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
            A+  F +M+ +   PD   F+ +L  CSH GL E+G+ YF  M   Y L+PG +HY C+
Sbjct: 344 LAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCV 403

Query: 334 VDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           VDL GRAG+LE+A ++I + S   D  +W  LLG+CKIHRNVE+ E+A + +++ E  + 
Sbjct: 404 VDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNI 463

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
           G YVLL+ I++   + EG+ R R +++   +K  PG S++E   ++H F+  D++HP A 
Sbjct: 464 GYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQ 523

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            IY  L+ +    K  G + D         S  + L      HSEKLAIAFGL  T  GT
Sbjct: 524 EIYHMLDGLEDIIKRRGGSNDN-----DQESRNEELITGMGVHSEKLAIAFGLINTEPGT 578

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + ++KNLR            S    R L+VRD  R+HHF++G+CSC DYW
Sbjct: 579 EITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 194/386 (50%), Gaps = 11/386 (2%)

Query: 48  IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNK 107
           +QN  T +WN+ +R  A+     +A+  Y  ML AS   P+ FTF F  K+C  +     
Sbjct: 17  LQN-TTASWNARLRELARQRHFQEALNLYCQML-ASGDSPNAFTFPFAFKSCASLSLPLA 74

Query: 108 CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD-NMPERDL-VSWNSIISCY 165
             +LHG VI++G E    V T+L+  Y     I +AR VFD N   R+L V +N++I+ Y
Sbjct: 75  GSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGY 134

Query: 166 TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV 225
           +  S   +A+ L+ +MR E V ++  T++ L+  CA    L  G  LH  +   G    +
Sbjct: 135 SLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDL 194

Query: 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
            VGN L+ MY +CG++D A  +F  M ++ +++WN+MI GY  +G     +  +++M   
Sbjct: 195 SVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFT 254

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM-VSRYNLKPGIKHYGCLVDLYGRAGKLE 344
           G  PD +T +G+L  C+H G    G E    + +S +   P +K+   L+++Y R G L 
Sbjct: 255 GIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLV 312

Query: 345 KALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
           KA  + +  +  + + W  ++    +H   E+       ++  +    G    ++ + AC
Sbjct: 313 KARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGA-AFVSVLSAC 371

Query: 405 TK---DEEGVARTRKLIKSNGIKTTP 427
           +     E+G+     + +  G++  P
Sbjct: 372 SHAGLTEKGLYYFTAMERDYGLQPGP 397


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 208/568 (36%), Positives = 311/568 (54%), Gaps = 67/568 (11%)

Query: 40  YAQLLFNQIQNPQTQ-AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           YA+LL  +   P T  A NSL+RA A+   P  A   +  + +A    PD ++FTF ++A
Sbjct: 150 YARLLLPR--RPATLLAHNSLLRALARGRRPHLAFGAFRDLPLA----PDNYSFTFLVRA 203

Query: 99  CERVKALNKCQ--------ELHGFVIRSGY------------------------------ 120
              + A              +H   +R G+                              
Sbjct: 204 ATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEI 263

Query: 121 -ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
               VV  T ++   A  G  +AAR +FD MP+RD V+WN++I+ Y       EAL+L++
Sbjct: 264 ASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFD 323

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
            MR     +   TLV  L++CA +GAL  G ++H  A   G   SV +G AL+DMY+KCG
Sbjct: 324 EMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCG 383

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            + +A  VF  M +R+V +W S + G  ++G G + ++ FK+M   G  P+ +TF+ +L 
Sbjct: 384 AVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLR 443

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP- 358
           GCS  GLV+EG   F  M S + + P ++HYGC+VDLYGRAG+L+ A+  IN   P +P 
Sbjct: 444 GCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFIN-GMPLEPH 502

Query: 359 -VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
             +W  LL + +IH+NVE+G+ AM  L+ +E+ +   +VLL+ IYA +++ +GV+  R +
Sbjct: 503 EGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNM 562

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD--ES 475
           +K+ G+K  PG S IE+G +VH+F V  K+HP    I   L E+  R +  GY  +  E 
Sbjct: 563 MKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEV 622

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
           L  +     ED +    + HSEKLAIAFGL   P+   +RIVKNLR            S 
Sbjct: 623 LFDIEEEDKEDAI----SLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISK 678

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            ++R++++RDR R+HHF+DG CSC DYW
Sbjct: 679 VFNREIVMRDRNRFHHFKDGACSCKDYW 706



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 2/215 (0%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A++       A+ LF+ +      AWN++I  +  +    +A+  ++ M  A  +  +  
Sbjct: 277 ALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEV- 335

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T    L AC ++ AL + + +H      G    V + T L+  Y+  G + AA  VFD+M
Sbjct: 336 TLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSM 395

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG- 209
            ER++ +W S +S         + L L++RM    V  +G T V +L  C+  G ++ G 
Sbjct: 396 GERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGR 455

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
                +    G    +     +VD+Y + G LD A
Sbjct: 456 ACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDA 490


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 197/546 (36%), Positives = 311/546 (56%), Gaps = 18/546 (3%)

Query: 21  IHGEWLLNSYAISVSS--SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNH 78
           ++ E L N++  S +   SLSYAQ +F+ I++    +WN+LI  +AQS  P  ++  +  
Sbjct: 411 VYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQ 470

Query: 79  MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
           M  + L  PD FT    L AC ++K+L   +E+HGF+IR+  ER + V  +++  Y   G
Sbjct: 471 MKNSGL-LPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 529

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
            +   + +FD M +  LVSWN++I+ + Q  F   AL L+ +M    +   G +++ +  
Sbjct: 530 ELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFG 589

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +C+ + +L +G   H  A +    ++ ++  +++DMYAK G +  +  VF+ ++++   S
Sbjct: 590 ACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAAS 649

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WN+MI+GYG+HGR  EAI  F++M   G +PD +TFLG+L  C+H GL+ EG+ Y   M 
Sbjct: 650 WNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMK 709

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEV-INTSSPSDPVLWRTLLGSCKIHRNVEIG 377
           S + LKP +KHY C++D+ GRAG+L+ AL V    S   D  +W +LL  C+IH+N+E+G
Sbjct: 710 SSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMG 769

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
           E     L  LE     +YVLL+ +YA     + V + R+ +K   ++   G SWIE+  +
Sbjct: 770 EKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGK 829

Query: 438 VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSE 497
           V  FVV ++     + I      +  +   +GY  D S V     S E+ +E+    HSE
Sbjct: 830 VFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQ-HDLSEEEKIEQLRG-HSE 887

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLAI +GL  T +GT+LR+ KNLR            S    R+++VRD  R+HHF  G C
Sbjct: 888 KLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFNKGFC 947

Query: 546 SCGDYW 551
           SCGDYW
Sbjct: 948 SCGDYW 953



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 170/388 (43%), Gaps = 6/388 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKAC 99
           +Q++F    N    +WN+++  F+              ML  S   + D  T    +  C
Sbjct: 330 SQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
                L   +ELH + ++  +    +++   +  YA  G +  A+ VF  +  + L SWN
Sbjct: 390 FDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWN 449

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++I  Y Q+S    +L  + +M+   +  D FT+  LLS+C+ + +L +G  +H      
Sbjct: 450 ALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRN 509

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
                ++V  +++ +Y  CG L +   +F  M    ++SWN++I G+  +G  + A+  F
Sbjct: 510 WLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLF 569

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           +QM++ G  P  I+ + +   CS    +  G E  H    ++ L+        ++D+Y +
Sbjct: 570 RQMVLYGIQPCGISMMTVFGACSLLPSLRLGREA-HAYALKHLLEDNAFIACSIIDMYAK 628

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            G + ++ +V N         W  ++    +H   +   I +   +Q    +  D   L 
Sbjct: 629 NGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEA-IKLFEEMQRTGRNPDDLTFLG 687

Query: 400 TIYACTKD---EEGVARTRKLIKSNGIK 424
            + AC       EG+    ++  S G+K
Sbjct: 688 VLTACNHSGLLHEGLRYLDQMKSSFGLK 715



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 167/378 (44%), Gaps = 38/378 (10%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           MG K H    G  + R + ++    ++  YA+  S   S +   F+ +++     WN++I
Sbjct: 102 MGRKIHHLVSGSTRLR-SDDVLCTRIITMYAMCGSPDDSRSA--FDALRSKNLFQWNAVI 158

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
            +++++    + +  +  M+  +   PD FTF   +KAC  +  +     +HG V+++G 
Sbjct: 159 SSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGL 218

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
              + V   L+  Y  +G +  A  +FD MPER+LVSWNS+I                  
Sbjct: 219 VEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRV---------------- 262

Query: 181 MRFEDVGLDG------FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
             F D G DG       T+V +L  CA    + +G  +H  A ++   + + V NAL+DM
Sbjct: 263 --FSDNGDDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDM 320

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG--FHPDSI 292
           Y+K G +  +  +F     ++V+SWN+M+ G+   G         +QML        D +
Sbjct: 321 YSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEV 380

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL----YGRAGKLEKALE 348
           T L  +  C  + ++   ++  H     Y+LK    +   L +     Y + G L  A  
Sbjct: 381 TILNAVPVCFDESVL-PSLKELHC----YSLKQEFVYDELLANAFVASYAKCGSLSYAQR 435

Query: 349 VINTSSPSDPVLWRTLLG 366
           V +         W  L+G
Sbjct: 436 VFHGIRSKTLNSWNALIG 453


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 205/567 (36%), Positives = 312/567 (55%), Gaps = 28/567 (4%)

Query: 7   ARYVGLNKARQAH------EIHGEWLLNSYAISV---SSSLSYAQLLFNQIQNPQTQAWN 57
           ARY  L+ AR  H      +  G   L++  I +     +++ A+ +F+ +      +W 
Sbjct: 75  ARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWT 134

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
           SLI  +AQ+  P +A+     ML     +P+ FTF   LKA     +    +++H   ++
Sbjct: 135 SLIAGYAQNDMPDEALGLLPGMLRGRF-KPNGFTFASLLKAAGASASSGIGEQIHALTVK 193

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177
             +   V V + L+  YA  G ++ A +VFD +  ++ VSWN++I+ + +       L +
Sbjct: 194 YDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLM 253

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
           +  M+        FT   + S+ A +GAL  G ++H    + G   S +VGN ++DMYAK
Sbjct: 254 FAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAK 313

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
            G++  A  VF R+ K+DV++WNSM+  +  +G G EA++ F++M   G H + ITFL +
Sbjct: 314 SGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSI 373

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           L  CSH GLV+EG +YF MM   YNL+P I HY  +VDL GRAG L  AL  I    P  
Sbjct: 374 LTACSHGGLVKEGKQYFDMM-KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFI-FKMPMK 431

Query: 358 PV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415
           P   +W  LLGSC++H+N +IG+ A  ++ +L+    G  VLL  IYA T   +  AR R
Sbjct: 432 PTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVR 491

Query: 416 KLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES 475
           K++K+ G+K  P  SW+EI N VH FV +D +HP ++ IY+K EEI  + +  GY  +  
Sbjct: 492 KMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTD 551

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
            V +     E   +    YHSEK+A+AF L   P G ++RI+KN+R            S 
Sbjct: 552 YVLLHVDEQER--QAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISK 609

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDY 550
            + R+++VRD  R+HHF  G CSCGDY
Sbjct: 610 VFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 139/271 (51%), Gaps = 3/271 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           + AC R ++L+  + +H  +  S +   V +  +L+  Y   G +  AR VFD MP RD+
Sbjct: 71  ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDM 130

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
            SW S+I+ Y Q     EAL L   M       +GFT   LL +     +  +G  +H +
Sbjct: 131 CSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHAL 190

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             +  + + VYVG+AL+DMYA+CG +D A  VF ++  ++ +SWN++I G+   G G+  
Sbjct: 191 TVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETT 250

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV-EYFHMMVSRYNLKPGIKHYGCLV 334
           +  F +M   GF     T+  +    +  G +E+G   + HM+ S   L   + +   ++
Sbjct: 251 LLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGN--TIL 308

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           D+Y ++G +  A +V +     D V W ++L
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSML 339



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 5/173 (2%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           L+++CA   +L+    +H       F  SV++ N+L+ +Y KCG +  A  VF  M  RD
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL--CGCSHQGLVEEGVEY 313
           + SW S+I GY  +   DEA+     ML   F P+  TF  LL   G S    + E +  
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQI-- 187

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            H +  +Y+    +     L+D+Y R G+++ A+ V +     + V W  L+ 
Sbjct: 188 -HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIA 239


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 195/546 (35%), Positives = 297/546 (54%), Gaps = 20/546 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA   +  L  A  LF    N     +N++I  F Q+    +   Y    L +
Sbjct: 251 GTALLDMYA--KTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFS 308

Query: 83  SLSR----PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
            + R    P  FTF+  +K C  ++A    +++H  + +   +    + + L+  Y+  G
Sbjct: 309 QMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLG 368

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
             E     F++ P+ D+VSW ++I+ Y Q      AL L+  +       D F +  +LS
Sbjct: 369 STEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLS 428

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +CA V A   G  +H  A + G      V N+ + MYAK GNLDSA   F  ++  DV+S
Sbjct: 429 ACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVS 488

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           W+ MI     HG   +AI+ F+ M   G HP+ ITFLG+L  CSH GLVEEG+ Y+  M 
Sbjct: 489 WSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMK 548

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD-PVLWRTLLGSCKIHRNVEIG 377
             Y++K  +KH  C+VDL  RAG+L  A   I  S   D PV+WRTLL  C+I++++  G
Sbjct: 549 KDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMWRTLLSGCRIYKDIVTG 608

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
           +   + L++L+   +  YVLL  IY     +    + R+L+K  GI+  PG SWIE+GN+
Sbjct: 609 KHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDRGIRKEPGQSWIEVGNE 668

Query: 438 VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSE 497
           VH FVV D SHP + +IY+KLE ++ + + IGY  D+ +  V+ S+ E        +HSE
Sbjct: 669 VHSFVVGDISHPMSQIIYKKLEGMLEKKRKIGYI-DQKIQNVTISTKEVKGTLGVNHHSE 727

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLA++FG+ + P    ++++KNLR            S+   R++I+RD +R+HHF++G C
Sbjct: 728 KLAVSFGIVSLPPSAPVKVMKNLRVCHDCHATMKLISVVEKREIILRDSLRFHHFKEGSC 787

Query: 546 SCGDYW 551
           SC DYW
Sbjct: 788 SCNDYW 793



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 161/334 (48%), Gaps = 11/334 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQ LF+++      ++N LI  +       +AI  ++   MA L + D F++   L AC 
Sbjct: 63  AQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACL-KLDKFSYAGVLSACG 121

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++K     + +HG  I  G  + V ++  L+  Y     I+ AR +F++  E D VSWNS
Sbjct: 122 QIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNS 181

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM---GIFLHRIAC 217
           +I+ Y +   + E LKL  +M    + L+ FTL   L SC ++   NM   G  LH    
Sbjct: 182 LITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSC-YLNLNNMVSYGKTLHGYTV 240

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD---- 273
           + G    + VG AL+DMYAK G L  A  +F     ++V+ +N+MI G+      D    
Sbjct: 241 KQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECA 300

Query: 274 -EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EA+  F QM   G  P   TF  ++  C+H    E G +  H  + ++N++        
Sbjct: 301 YEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQ-IHAHICKHNIQSDEFIGST 359

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           L++LY   G  E  L+  N++   D V W T++ 
Sbjct: 360 LIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIA 393



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 142/303 (46%), Gaps = 7/303 (2%)

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           H  +I++ +  C+ +  N +  Y+  G +  A+ +FD M ER ++S+N +IS Y    F+
Sbjct: 32  HAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFY 91

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
            +A+ L+   R   + LD F+   +LS+C  +    +G  +H +A   G  + V++ N L
Sbjct: 92  HKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLL 151

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           +DMY KC  +D A  +F    + D +SWNS+I GY   G  +E +    +M   G   ++
Sbjct: 152 IDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNA 211

Query: 292 ITFLGLLCGC--SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
            T    L  C  +   +V  G +  H    +  L   I     L+D+Y + G L  A+++
Sbjct: 212 FTLGSALKSCYLNLNNMVSYG-KTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQL 270

Query: 350 INTSSPSDPVLWRTLLG----SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
             TS   + V++  ++     +  I +      + + + +Q +     D+   + I  C 
Sbjct: 271 FRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICN 330

Query: 406 KDE 408
             E
Sbjct: 331 HIE 333


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 183/480 (38%), Positives = 288/480 (60%), Gaps = 20/480 (4%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D+ T+   L  C +++ L    ++H  ++++G    V VS+ L+  Y   G +  AR  F
Sbjct: 228 DSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQF 287

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D + +R++V+W ++++ Y Q     E L L+ +M  ED   + FT   LL++CA + AL 
Sbjct: 288 DGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALA 347

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  LH      GF   + VGNAL++MY+K GN+DS++ VFS M  RDV++WN+MI GY 
Sbjct: 348 YGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYS 407

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            HG G +A+  F+ M+ AG  P+ +TF+G+L  C H  LV+EG  YF  ++ +++++PG+
Sbjct: 408 HHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGL 467

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
           +HY C+V L GRAG L++A   + T++    D V WRTLL +C IHRN  +G+   + ++
Sbjct: 468 EHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVI 527

Query: 386 QLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDD 445
           Q++    G Y LL+ ++A  +  +GV + RKL+K   IK  PG SW++I N  H FV + 
Sbjct: 528 QMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEG 587

Query: 446 KSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAF 503
            +HP++  I+ K+++++   K +GY  D  +V   V     E +L    ++HSEKLA+A+
Sbjct: 588 SNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVEDEQKEGYL----SHHSEKLALAY 643

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           GL   P    +RI+KNLR            S A +R +IVRD  R+HHFR+GLC+C D+W
Sbjct: 644 GLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 177/365 (48%), Gaps = 4/365 (1%)

Query: 2   GLKKHARYVGLNKARQAHEI-HGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           G   HA+ V  N+  +  +I     L+N Y+    S    A+ LF+++      +W++L+
Sbjct: 42  GKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKC--ARKLFDRMLQRNVVSWSALM 99

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             +      L+ +  + +++    + P+ + FT  L  C     + + ++ HG++++SG 
Sbjct: 100 MGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGL 159

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
                V   L+  Y+    +++A  + D +P  D+ S+NSI+S   ++    EA ++ +R
Sbjct: 160 LLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKR 219

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M  E V  D  T V +L  CA +  L +G+ +H    + G V  V+V + L+D Y KCG 
Sbjct: 220 MVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGE 279

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           + +A   F  +R R+V++W +++  Y  +G  +E ++ F +M +    P+  TF  LL  
Sbjct: 280 VLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNA 339

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           C+    +  G +  H  +     K  +     L+++Y ++G ++ +  V +     D + 
Sbjct: 340 CASLVALAYG-DLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVIT 398

Query: 361 WRTLL 365
           W  ++
Sbjct: 399 WNAMI 403


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 205/571 (35%), Positives = 312/571 (54%), Gaps = 26/571 (4%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLL-----FNQIQNPQTQAWN 57
           L  +A+     +AR+      E    S+ I++ + +    +L     F++     T +WN
Sbjct: 154 LDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWN 213

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKACERVKALNKCQELHGFVI 116
           ++I    +S     A+ +   M  A +     T++  F L     +  L +  +LHG V+
Sbjct: 214 TIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGR--QLHGRVL 271

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDL-VSWNSIISCYTQASFHLE 173
            +  E    V ++LM  Y   G++EAA SVFD+     RD+  +W+++++ Y Q     E
Sbjct: 272 IAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEE 331

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           AL L+ RM  E V  D FTL  + ++CA+VG +  G  +H    ++ +     + +A+VD
Sbjct: 332 ALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVD 391

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MYAKCGNL+ A  +F R   +++  W SM+  Y  HG+G  AI  F++M      P+ IT
Sbjct: 392 MYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEIT 451

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
            +G+L  CSH GLV EG  YF  M   Y + P I+HY C+VDLYGR+G L+KA   I  +
Sbjct: 452 LVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEEN 511

Query: 354 SPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           + + + ++W+TLL +C++H++ E  ++A + LVQLE   AG YV+L+ IYA         
Sbjct: 512 NINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTF 571

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
             R  ++   ++  PG SWI + N VH FV  D SHP +  IY  LE+++ R K IGYT 
Sbjct: 572 ELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTS 631

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
              LV       ++  E +  +HSEKLAIAFG+ +TP GT LRI KNLR           
Sbjct: 632 RTDLVV--HDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKY 689

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S+A  R+++VRD  R+HHF+D  CSC D+W
Sbjct: 690 ISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 171/399 (42%), Gaps = 36/399 (9%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F++        W   I   A+       +  +  ML    + P+ F     ++ C 
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +  +   + +HG+++R+G    VV+   ++  YA  G  E AR VF  M ERD VSWN 
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNI 183

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN-------MGIFLH 213
            I    Q+   L +++L++     D       +  L+ S     AL+        G+  +
Sbjct: 184 AIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFN 243

Query: 214 RIACEMGFVES------------------------VYVGNALVDMYAKCGNLDSAFCVFS 249
                  FV +                         +V ++L+DMY KCG L++A  VF 
Sbjct: 244 HYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFD 303

Query: 250 RMRK--RDV-LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
                 RD+  +W++M+ GY  +GR +EA+  F++ML  G   D  T   +   C++ G+
Sbjct: 304 HWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGM 363

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           VE+G +  H  V +   K        +VD+Y + G LE A  + + +   +  +W ++L 
Sbjct: 364 VEQGRQ-VHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLC 422

Query: 367 SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           S   H    I  I +   +  E  +  +  L+  + AC+
Sbjct: 423 SYASHGQGRIA-IELFERMTAEKMTPNEITLVGVLSACS 460


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 190/545 (34%), Positives = 317/545 (58%), Gaps = 30/545 (5%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S   S+ +A+ +F+++ +    +WN++I +  Q+    +A+      L+  + 
Sbjct: 105 LINMY--SKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEAL-----DLLLQMQ 157

Query: 86  RPDT----FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
           R  T    FT +  L AC    AL++CQ LH F I++  +  V V+T L+  YA  G+++
Sbjct: 158 REGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMK 217

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            A  VF++MP+R +V+W+S+ + Y Q   + +AL L+ +     +  D F +  ++ +CA
Sbjct: 218 DAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACA 277

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
            + A+  G  ++ +  + GF  +++V ++L+DMYAKCG ++ ++ VF  + KR+V+ WN+
Sbjct: 278 GLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNA 337

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI G   H R  E +  F++M   G  P+ +TF+ +L  C H GLV++G +YF +M   +
Sbjct: 338 MISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEH 397

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIA 380
           +L P + HY C+VD   RAG++ +A ++I+     +   +W +LL SC+ H N+E+ E+A
Sbjct: 398 HLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVA 457

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            K L  +E  ++G+Y+LL+ +YA     + VA+ RKL+K + +K   G SWIEI ++VH 
Sbjct: 458 AKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHL 517

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD--ESLVAVSGSSSEDFLEKSSAYHSEK 498
           F+V +++HP    IY KL E+M   + +GY  +    L  V  S  ++ L     +HSEK
Sbjct: 518 FMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLR----HHSEK 573

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LA   GL   P    +RI+KNLR            S  + RD+IVRD  R+HHF++G CS
Sbjct: 574 LAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCS 633

Query: 547 CGDYW 551
           CGD+W
Sbjct: 634 CGDFW 638



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 161/328 (49%), Gaps = 12/328 (3%)

Query: 86  RPDTFTFTFT--------LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
           +P T  F  T        LK C + K L + +  H  ++  G +  ++ S  L+  Y+  
Sbjct: 53  KPTTKDFNATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKC 112

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G ++ AR VFD MP R LVSWN++I   TQ     EAL L  +M+ E      FT+  +L
Sbjct: 113 GSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVL 172

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
            +CA   AL+    LH  A +     +V+V  AL+D+YAKCG +  A CVF  M  R V+
Sbjct: 173 CACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVV 232

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +W+SM  GY  +   ++A++ F++    G   D      ++C C+    + EG +  + +
Sbjct: 233 TWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ-VNAL 291

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEI 376
           +S+      I     L+D+Y + G +E++ +V       + VLW  ++     H R++E+
Sbjct: 292 LSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEV 351

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYAC 404
             +  K  +Q    S  D   ++ + AC
Sbjct: 352 MILFEK--MQQMGLSPNDVTFVSVLSAC 377


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/568 (35%), Positives = 318/568 (55%), Gaps = 23/568 (4%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           +G  +HAR V  +K+     +    L+  Y       +  A+ LF++I      +WN++I
Sbjct: 175 VGELRHARLV-FDKSTLRDAVSFTALITGYV--SEGHVDDARRLFDEIPAKDVVSWNAMI 231

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             + QS    +A+  +  M  A +S P+  T    L AC  +++L   + +  +V   G+
Sbjct: 232 AGYVQSGRFEEALACFTRMQEADVS-PNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGF 290

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
            + + +   L+  Y+  G I  AR +FD M ++D++ WN++I  Y   S + EAL L+E 
Sbjct: 291 GKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEV 350

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE----MGFVESVYVGNALVDMYA 236
           M  E+V  +  T + +L +CA +GAL++G ++H    +     G V +V +  +++ MYA
Sbjct: 351 MLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYA 410

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           KCG ++ A  VF  M  R + SWN+MI G  ++G  + A+  F++M+  GF PD ITF+G
Sbjct: 411 KCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVG 470

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSP 355
           +L  C+  G VE G  YF  M   Y + P ++HYGC++DL  R+GK ++A  ++ N    
Sbjct: 471 VLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEME 530

Query: 356 SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415
            D  +W +LL +C+IH  VE GE   + L +LE  ++G YVLL+ IYA     + VA+ R
Sbjct: 531 PDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIR 590

Query: 416 KLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES 475
             +   G+K  PG + IEI   VH+F+V DK HP ++ I+R L+E+    +  G+  D S
Sbjct: 591 TKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTS 650

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
            V       E++ E +   HSEKLAIAFGL +T  G+++RIVKNLR            S 
Sbjct: 651 EVLY--DMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISK 708

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            ++R++I RDR R+HHF+DG CSC D W
Sbjct: 709 IFNREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 209/419 (49%), Gaps = 42/419 (10%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQI--QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS 83
           L+   A+S S  LSYA  LF+ I  Q P    WN+LIRA + + +P  ++  ++ ML + 
Sbjct: 63  LIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSG 122

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE---------------------- 121
           L  P++ TF    K+C + KA ++ ++LH   ++                          
Sbjct: 123 L-YPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHA 181

Query: 122 ---------RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
                    R  V  T L+ GY + G ++ AR +FD +P +D+VSWN++I+ Y Q+    
Sbjct: 182 RLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFE 241

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           EAL  + RM+  DV  +  T+V +LS+C H+ +L +G ++     + GF +++ + NALV
Sbjct: 242 EALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALV 301

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           DMY+KCG + +A  +F  M  +DV+ WN+MI GY      +EA+  F+ ML     P+ +
Sbjct: 302 DMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDV 361

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK-----PGIKHYGCLVDLYGRAGKLEKAL 347
           TFL +L  C+  G ++ G ++ H  + + NLK       +  +  ++ +Y + G +E A 
Sbjct: 362 TFLAVLPACASLGALDLG-KWVHAYIDK-NLKGTGNVNNVSLWTSIIVMYAKCGCVEVAE 419

Query: 348 EVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
           +V  +        W  ++    ++ + E      + ++  E     D   +  + ACT+
Sbjct: 420 QVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMIN-EGFQPDDITFVGVLSACTQ 477


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 194/522 (37%), Positives = 298/522 (57%), Gaps = 18/522 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           ++N++      A+NS++ +  ++    + +     M+  S+ + D  TF      C  +K
Sbjct: 190 VWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESV-KWDKVTFVNAFSLCASLK 248

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII- 162
            L     +HG ++ S  E    VS+ ++  Y   G    AR VFD +  R++V W +++ 
Sbjct: 249 DLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMA 308

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           SC+    F  EAL L+ +M  E+V  + FT   LL++CA + A   G  LH  + + GF 
Sbjct: 309 SCFQNGCFE-EALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFK 367

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
             V VGNAL++MYAK G++++A  VFS M  RD+++WN+MI G+  HG G +A+  F+ M
Sbjct: 368 HHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDM 427

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
           L A  HP+ +TF G+L  C H GLV+EG  Y H ++ ++ ++PG++HY C+V L  + G+
Sbjct: 428 LAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQ 487

Query: 343 LEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           L +A   + T+    D V WRTLL +C +H+N  +G    + +++++    G Y LL+ I
Sbjct: 488 LNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNI 547

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           YA  K  +GV + RKL++   IK  PG SWIEIGN  H F  +D  HPD    Y+K++E+
Sbjct: 548 YAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKEL 607

Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
           +   K +GYT D  + AV     ++  E   +YHSEKLAIA+GL   P   S+ ++KNLR
Sbjct: 608 LAMIKPLGYTPD--IGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLR 665

Query: 522 ------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                       S   +R ++VRD  R+HHFRDG CSC DYW
Sbjct: 666 ICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 172/369 (46%), Gaps = 11/369 (2%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           +G   H+  +  ++A +   I    L+N YA    + +S A  LF+++      +W++L+
Sbjct: 47  VGKTIHSHLIVTSRATENSIIEVNSLINFYA--KVNQVSIAHNLFDRMPERNVVSWSALM 104

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             +  +   L+ I     M+      P+ +     + +C     + + ++ HG ++++G+
Sbjct: 105 TGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGF 164

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
                V   L+  Y+   +++ A  V++ +P  D+V++NSI+S   +  +  E L++   
Sbjct: 165 SFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRS 224

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M  E V  D  T V   S CA +  L +G+ +H            YV +A+++MY KCG 
Sbjct: 225 MVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGK 284

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
              A  VF  ++ R+V+ W +++     +G  +EA++ F +M       +  T+  LL  
Sbjct: 285 SLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNA 344

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHY----GCLVDLYGRAGKLEKALEVINTSSPS 356
           C+       G      ++  ++ K G KH+      L+++Y ++G +E A +V +     
Sbjct: 345 CAGLSARRNG-----SLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHR 399

Query: 357 DPVLWRTLL 365
           D + W  ++
Sbjct: 400 DIITWNAMI 408


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 208/568 (36%), Positives = 311/568 (54%), Gaps = 67/568 (11%)

Query: 40  YAQLLFNQIQNPQTQ-AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           YA+LL  +   P T  A NSL+RA A+   P  A   +  + +A    PD ++FTF ++A
Sbjct: 143 YARLLLPR--RPATLLAHNSLLRALARGRRPHLAFGAFRDLPLA----PDNYSFTFLVRA 196

Query: 99  CERVKALNKCQ--------ELHGFVIRSGY------------------------------ 120
              + A              +H   +R G+                              
Sbjct: 197 ATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEI 256

Query: 121 -ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
               VV  T ++   A  G  +AAR +FD MP+RD V+WN++I+ Y       EAL+L++
Sbjct: 257 ASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFD 316

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
            MR     +   TLV  L++CA +GAL  G ++H  A   G   SV +G AL+DMY+KCG
Sbjct: 317 EMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCG 376

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            + +A  VF  M +R+V +W S + G  ++G G + ++ FK+M   G  P+ +TF+ +L 
Sbjct: 377 AVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLR 436

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP- 358
           GCS  GLV+EG   F  M S + + P ++HYGC+VDLYGRAG+L+ A+  IN   P +P 
Sbjct: 437 GCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFIN-GMPLEPH 495

Query: 359 -VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
             +W  LL + +IH+NVE+G+ AM  L+ +E+ +   +VLL+ IYA +++ +GV+  R +
Sbjct: 496 EGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNM 555

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD--ES 475
           +K+ G+K  PG S IE+G +VH+F V  K+HP    I   L E+  R +  GY  +  E 
Sbjct: 556 MKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEV 615

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
           L  +     ED +    + HSEKLAIAFGL   P+   +RIVKNLR            S 
Sbjct: 616 LFDIEEEDKEDAI----SLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISK 671

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            ++R++++RDR R+HHF+DG CSC DYW
Sbjct: 672 VFNREIVMRDRNRFHHFKDGACSCKDYW 699



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 2/215 (0%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A++       A+ LF+ +      AWN++I  +  +    +A+  ++ M  A  +  +  
Sbjct: 270 ALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEV- 328

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T    L AC ++ AL + + +H      G    V + T L+  Y+  G + AA  VFD+M
Sbjct: 329 TLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSM 388

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG- 209
            ER++ +W S +S         + L L++RM    V  +G T V +L  C+  G ++ G 
Sbjct: 389 GERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGR 448

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
                +    G    +     +VD+Y + G LD A
Sbjct: 449 ACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDA 483


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/545 (34%), Positives = 316/545 (57%), Gaps = 30/545 (5%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S   S+ +A+ +F+++ +    +WN++I +  Q+    +A+      L+  + 
Sbjct: 105 LINMY--SKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEAL-----DLLLQMQ 157

Query: 86  RPDT----FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
           R  T    FT +  L AC    AL++CQ LH F I++  +  V V+T L+  YA  G+++
Sbjct: 158 REGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMK 217

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            A  VF++MP+R +V+W+S+ + Y Q   + +AL L+ +     +  D F +  ++ +CA
Sbjct: 218 DAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACA 277

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
            + A+  G  ++ +  + GF  +++V ++L+DMYAKCG ++ ++ VF  + KR+V+ WN+
Sbjct: 278 GLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNA 337

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI G   H R  E +  F++M   G  P+ +TF+ +L  C H GLV +G +YF +M   +
Sbjct: 338 MISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEH 397

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIA 380
           +L P + HY C+VD   RAG++ +A ++I+     +   +W +LL SC+ H N+E+ E+A
Sbjct: 398 HLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVA 457

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            K L  +E  ++G+Y+LL+ +YA     + VA+ RKL+K + +K   G SWIEI ++VH 
Sbjct: 458 AKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHL 517

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD--ESLVAVSGSSSEDFLEKSSAYHSEK 498
           F+V +++HP    IY KL E+M   + +GY  +    L  V  S  ++ L     +HSEK
Sbjct: 518 FMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLR----HHSEK 573

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LA   GL   P    +RI+KNLR            S  + RD+IVRD  R+HHF++G CS
Sbjct: 574 LAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCS 633

Query: 547 CGDYW 551
           CGD+W
Sbjct: 634 CGDFW 638



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 161/328 (49%), Gaps = 12/328 (3%)

Query: 86  RPDTFTFTFT--------LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
           +P T  F  T        LK C + K L + +  H  ++  G +  ++ S  L+  Y+  
Sbjct: 53  KPTTKDFNATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKC 112

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G ++ AR VFD MP R LVSWN++I   TQ     EAL L  +M+ E      FT+  +L
Sbjct: 113 GSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVL 172

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
            +CA   AL+    LH  A +     +V+V  AL+D+YAKCG +  A CVF  M  R V+
Sbjct: 173 CACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVV 232

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +W+SM  GY  +   ++A++ F++    G   D      ++C C+    + EG +  + +
Sbjct: 233 TWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ-MNAL 291

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEI 376
           +S+      I     L+D+Y + G +E++ +V       + VLW  ++     H R++E+
Sbjct: 292 LSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEV 351

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYAC 404
             +  K  +Q    S  D   ++ + AC
Sbjct: 352 MILFEK--MQQMGLSPNDVTFVSVLSAC 377


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 185/444 (41%), Positives = 269/444 (60%), Gaps = 17/444 (3%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           R +VV T ++ GY+  G +E AR +FD M E+DLV W+++IS Y ++    EAL L+  M
Sbjct: 12  RNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEM 71

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           +   +  D  T++ ++S+CA +G L+   ++H    + G   ++ V NAL+DMYAKCGNL
Sbjct: 72  QVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNL 131

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
            +A  VF +M+ R+V+SW SMI  + +HG    A+ FF QM      P+ +TF+G+L  C
Sbjct: 132 GAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYAC 191

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--V 359
           SH GLVEEG   F  M + +N+ P  +HYGC+VDL+GRA  L  ALE++ T  P  P  V
Sbjct: 192 SHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVET-MPLAPNVV 250

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
           +W +L+ +C+IH   E+GE A K +++LE    G  V L+ IYA  +  + V   R L+K
Sbjct: 251 IWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMK 310

Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
             GI    G S IE+ NQV++FV+ DK H  AD IY KL+E++   K +GYT +   V V
Sbjct: 311 QRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRSVLV 370

Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
                E+  ++   +HSEKLA+ +GL     G+ +RIVKNLR            S  Y  
Sbjct: 371 --DVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYGM 428

Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
           ++IVRDR R+HH++ G+CSC DYW
Sbjct: 429 EIIVRDRTRFHHYKAGVCSCNDYW 452



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 129/255 (50%), Gaps = 11/255 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+L+F+Q++      W+++I  +A+S  P +A+  ++ M +  + +PD  T    + AC 
Sbjct: 33  ARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGI-KPDQVTILSVISACA 91

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R+  L++ + +H +V ++G    + V+  L+  YA  G + AAR VF+ M  R+++SW S
Sbjct: 92  RLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTS 151

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+ +        ALK + +M+ E++  +G T V +L +C+H G +  G    R    M 
Sbjct: 152 MINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEG---RRTFASMT 208

Query: 221 FVESVYVGN----ALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEA 275
              ++   +     +VD++ +   L  A  +   M    +V+ W S++    +HG  +  
Sbjct: 209 NEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHGENELG 268

Query: 276 ISFFKQMLMAGFHPD 290
               KQ+L     PD
Sbjct: 269 EFAAKQVL--ELEPD 281


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/428 (44%), Positives = 258/428 (60%), Gaps = 16/428 (3%)

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G  + A  +F  MP RD+VSWNS+++CY Q     EAL L+++MR   V     T+V LL
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           S+CAH+GAL+ G+ LH    +     +  VG ALVDMYAKCG +  A  VF+ M  +DVL
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 281

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +WN++I G  +HG   EA   FK+M  AG  P+ ITF+ +L  CSH G+V+EG +    M
Sbjct: 282 AWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 341

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEI 376
            S Y ++P ++HYGC++DL  RAG LE+A+E+I T     +P     LLG C+IH N E+
Sbjct: 342 SSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFEL 401

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
           GE+  K L+ L+   +G Y+LL+ IYA  K  +   + R L+K NGI   PG S IE+  
Sbjct: 402 GEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKG 461

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAK-FIGYTKDESLVAVSGSSSEDFLEKSSAYH 495
            VH+FV  D SHP+++ IY KL EI  R K  IG++ D   V +     E+  E +   H
Sbjct: 462 MVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLL--DMEEEDKEHALPVH 519

Query: 496 SEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDG 543
           SEKLAIA+GL       ++RIVKNLR            S  Y R++IVRDR R+HHF DG
Sbjct: 520 SEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 579

Query: 544 LCSCGDYW 551
            CSC D+W
Sbjct: 580 ECSCLDFW 587



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 3/229 (1%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LF+++      +WNS++  +AQ   P +A+  ++ M    + +P   T    L AC  + 
Sbjct: 170 LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV-KPTEATVVSLLSACAHLG 228

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           AL+K   LH ++  +  E   +V T L+  YA  G I  A  VF+ M  +D+++WN+II+
Sbjct: 229 ALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIA 288

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIACEMGFV 222
                    EA +L++ M+   V  +  T V +LS+C+H G ++ G   L  ++   G  
Sbjct: 289 GMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIE 348

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHG 270
             V     ++D+ A+ G L+ A  +   M  + +  +  +++ G  +HG
Sbjct: 349 PKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHG 397


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 209/544 (38%), Positives = 308/544 (56%), Gaps = 22/544 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ Y  S    ++YA L+F+++ N    +W ++I A+AQ+    +A+     +   
Sbjct: 251 GNTLIDMY--SKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTK 308

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +   DT     TL AC  ++ L+  +E+HG+ ++ G    +++   ++  YA  G I  
Sbjct: 309 GMD-VDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSD-LMMQNMIIDVYADCGNINY 366

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  +F+++  +D+VSW S+ISCY       EAL ++  M+   V  D  TLV +LS+ A 
Sbjct: 367 ATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAAS 426

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + ALN G  +H      GF+      N+LVDMYA CG+L++A+ VF   R + ++ W +M
Sbjct: 427 LSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTM 486

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I  YG+HGRG  A+  F  M      PD ITFL LL  CSH GL+ EG      M  +Y 
Sbjct: 487 INAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQ 546

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSS--PSDPVLWRTLLGSCKIHRNVEIGEIA 380
           L+P  +HY CLVDL GRA  LE+A   + +    P+  V W   LG+C+IH N ++GEIA
Sbjct: 547 LEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEV-WCAFLGACRIHSNKKLGEIA 605

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + L+ L+  S G YVL++ ++A +   + V   R  +K  G+K  PG SWIE+GN+VH 
Sbjct: 606 AQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHT 665

Query: 441 FVVDDKSHPDADMIYRKLEEIMHR-AKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
           F+V DKSHP++  IY+KL +I  +  K  GY     LV  +    E    +    HSE+L
Sbjct: 666 FLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKV--QMLYGHSERL 723

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           AIA+GL +T +GT +RI KNLR            S  + R+LIVRD  R+HHF DG+CSC
Sbjct: 724 AIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSC 783

Query: 548 GDYW 551
           GD+W
Sbjct: 784 GDFW 787



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 166/327 (50%), Gaps = 4/327 (1%)

Query: 81  MASLSRP-DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           M  L  P D+FTF   LKAC  V+ +++  E+HG +I+ GY+  V V+ +L+  YA    
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 140 IEAARSVFDNMPER-DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
           I  AR +FD M ER D+VSWNSIIS Y+     +EAL L+  M+   VG + +TLV  L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +C       +G+ +H    +   V  VYV NALV M+ + G +  A  +F  + ++D ++
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WNSMI G+  +G  +EA+ FF  +  A   PD ++ + +L      G +  G E  H   
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKE-IHAYA 239

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
            +  L   ++    L+D+Y +   +  A  V +     D + W T++ +     N     
Sbjct: 240 MKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAA-YAQNNCHTEA 298

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACT 405
           + +   VQ +       ++ +T+ AC+
Sbjct: 299 LKLLRKVQTKGMDVDTMMIGSTLLACS 325



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 184/368 (50%), Gaps = 4/368 (1%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +SYA  +F+++       WNS+I  F Q+    +A+ ++  +  A+L +PD  +    L 
Sbjct: 163 MSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANL-KPDEVSLISILA 221

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A  R+  L   +E+H + +++  +  + +   L+  Y+    +  A  VFD M  +DL+S
Sbjct: 222 ASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLIS 281

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++I+ Y Q + H EALKL  +++ + + +D   +   L +C+ +  L+    +H    
Sbjct: 282 WTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTL 341

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G  + + + N ++D+YA CGN++ A  +F  ++ +DV+SW SMI  Y  +G  +EA+ 
Sbjct: 342 KRGLSD-LMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALG 400

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F  M      PDSIT + +L   +    + +G E  H  + R            LVD+Y
Sbjct: 401 VFYLMKETSVEPDSITLVSILSAAASLSALNKGKE-IHGFIFRKGFMLEGSTVNSLVDMY 459

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
              G LE A +V   +     VLW T++ +  +H   +   + + ++++ +         
Sbjct: 460 ACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGK-AAVELFSIMEDQKLIPDHITF 518

Query: 398 LATIYACT 405
           LA +YAC+
Sbjct: 519 LALLYACS 526



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 179/365 (49%), Gaps = 12/365 (3%)

Query: 41  AQLLFNQI-QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           A+ LF+++ +     +WNS+I A++ +   ++A+  +  M  A +   +T+T    L+AC
Sbjct: 64  ARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVG-ANTYTLVAALQAC 122

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
           E         E+H  +++S     V V+  L+  +   G +  A  +FD + E+D ++WN
Sbjct: 123 EDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWN 182

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           S+I+ +TQ   + EAL+ +  ++  ++  D  +L+ +L++   +G L  G  +H  A + 
Sbjct: 183 SMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKN 242

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
               ++ +GN L+DMY+KC  +  A  VF +M  +D++SW ++I  Y  +    EA+   
Sbjct: 243 WLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLL 302

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY---GCLVDL 336
           +++   G   D++     L  CS    +    E     V  Y LK G+        ++D+
Sbjct: 303 RKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKE-----VHGYTLKRGLSDLMMQNMIIDV 357

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           Y   G +  A  +  +    D V W +++ SC +H  +    + +  L++ E +   D +
Sbjct: 358 YADCGNINYATRMFESIKCKDVVSWTSMI-SCYVHNGLANEALGVFYLMK-ETSVEPDSI 415

Query: 397 LLATI 401
            L +I
Sbjct: 416 TLVSI 420


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/552 (36%), Positives = 300/552 (54%), Gaps = 49/552 (8%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQS-----------LSPLQAIFYYNHMLMASLSRPDT 89
           A+  F+ +      +WN++I  +AQS            SP+Q +F +  M+   +     
Sbjct: 238 ARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQN--- 294

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGY---ER------------CVVVST--NLMR 132
                  +A E    + +  E+    + +GY   ER            C  VST   ++ 
Sbjct: 295 ---RMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMIT 351

Query: 133 GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192
           GYA  G I  A+++FD MP+RD VSW ++I+ Y+Q+    EAL+L+ +M  E   L+  +
Sbjct: 352 GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSS 411

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
               LS+CA V AL +G  LH    + G+    +VGNAL+ MY KCG+++ A  +F  M 
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 471

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
            +D++SWN+MI GY  HG G+ A+ FF+ M   G  PD  T + +L  CSH GLV++G +
Sbjct: 472 GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIH 371
           YF+ M   Y + P  +HY C+VDL GRAG LE A  ++ N     D  +W TLLG+ ++H
Sbjct: 532 YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVH 591

Query: 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSW 431
            N E+ E A   +  +E  ++G YVLL+ +YA +     V + R  ++  G+K  PG+SW
Sbjct: 592 GNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSW 651

Query: 432 IEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKS 491
           IEI N+ H F V D+ HP+ D I+  LEE+  R K  GY    S+V       E   E+ 
Sbjct: 652 IEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEK--ERM 709

Query: 492 SAYHSEKLAIAFGLATTPDGTSLRIVKNLR-------SIAY-----SRDLIVRDRVRYHH 539
             YHSE+LA+A+G+     G  +R++KNLR       +I Y      R +I+RD  R+HH
Sbjct: 710 VRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHH 769

Query: 540 FRDGLCSCGDYW 551
           F+DG CSCGDYW
Sbjct: 770 FKDGSCSCGDYW 781



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 154/349 (44%), Gaps = 31/349 (8%)

Query: 23  GEWLLNSYAISVSSSL-----SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYN 77
           G+  +  + +++SS +     + A  +F ++    + ++N +I  + ++       F   
Sbjct: 60  GDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRN-----GEFELA 114

Query: 78  HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
             L   +   D  ++   +K   R + L K +EL   +     ER V     ++ GYA N
Sbjct: 115 RKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMP----ERDVCSWNTMLSGYAQN 170

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G ++ ARSVFD MPE++ VSWN+++S Y Q S   EA  L++    E+  L  +   CLL
Sbjct: 171 GCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSR--ENWALVSWN--CLL 226

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
                       I   R   +   V  V   N ++  YA+ G +D A  +F     +DV 
Sbjct: 227 GGFVK----KKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVF 282

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +W +M+ GY  +   +EA   F +M       + +++  +L G      +E   E F +M
Sbjct: 283 TWTAMVSGYIQNRMVEEARELFDKMP----ERNEVSWNAMLAGYVQGERMEMAKELFDVM 338

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
             R      +  +  ++  Y + GK+ +A  + +     DPV W  ++ 
Sbjct: 339 PCR-----NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIA 382


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 193/523 (36%), Positives = 298/523 (56%), Gaps = 23/523 (4%)

Query: 43  LLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
           LL +  QN    +W ++I    Q+     A   ++ M    ++ P+  T++  L   E  
Sbjct: 317 LLMSGSQN--VVSWTAMIDGCIQNGDIPLAAALFSRMREDGVA-PNDLTYSTILTVSEA- 372

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
              +   ++H  VI++ YE    V T LM  Y+     E A S+F  + ++D+VSW++++
Sbjct: 373 ---SFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAML 429

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGF 221
           +CY QA     A   + +M    +  + FT+   + +CA   A +++G   H I+ +   
Sbjct: 430 TCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRC 489

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
            +++ V +ALV MYA+ G++++A CVF R   RD+LSWNSM+ GY  HG   +A+  F+Q
Sbjct: 490 HDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQ 549

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           M + G   D +TFL ++ GC+H GLVEEG +YF +MV  Y + P + HY C+VDLY RAG
Sbjct: 550 MEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAG 609

Query: 342 KLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
           KL++ + +I     P+ P +WR LLG+C++H+NVE+G++A + L+ LE   +  YVLL+ 
Sbjct: 610 KLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSN 669

Query: 401 IYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE 460
           IY+     +     RKL+ +  ++   G SWI+I N+VH F+  DKSHP ++ IY KL  
Sbjct: 670 IYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRA 729

Query: 461 IMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
           +  + K  GY  D S   V    +ED  E   A HSE+LA+AFGL  TP    L I KNL
Sbjct: 730 MTAKLKQEGYCPDTSF--VPHDVAEDQKEAMLAMHSERLALAFGLIATPPAAPLHIFKNL 787

Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R            S    R++++RD  R+HHF+ G+CSCGD+W
Sbjct: 788 RVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 151/283 (53%), Gaps = 19/283 (6%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           +K C  V      ++LH   +R G++   + V T+L+  Y     +   R VF+ M +R+
Sbjct: 62  IKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRN 121

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +V+W S+++ Y QA   L+ + L+ RMR E V  + FT   +LS  A  G +++G  +H 
Sbjct: 122 VVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHA 181

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            + + G   +V+V N+L++MYAKCG ++ A  VF RM  RD++SWN+++ G  ++GR  E
Sbjct: 182 QSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLE 241

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY----NLKPGIKHY 330
           A+  F          DS + + +L   ++  ++       H+ ++R      LK G   Y
Sbjct: 242 ALQLFH---------DSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSY 292

Query: 331 G----CLVDLYGRAGKLEKALEVINTSSPSDPVL-WRTLLGSC 368
           G     L+D Y +AG+L+KAL+V    S S  V+ W  ++  C
Sbjct: 293 GNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGC 335



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 160/373 (42%), Gaps = 28/373 (7%)

Query: 56  WNSLIRAFAQS--LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
           W SL+  + Q+  L  + ++F+    + A    P+ FTF+  L        ++  Q +H 
Sbjct: 125 WTSLLTGYIQAGVLLDVMSLFFR---MRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHA 181

Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
             I+ G    V V  +LM  YA  G++E AR VF  M  RD+VSWN++++        LE
Sbjct: 182 QSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLE 241

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           AL+L+   R     L   T   +++ CA++  L +   LH    + GF     V  AL+D
Sbjct: 242 ALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMD 301

Query: 234 MYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
            Y K G LD A  VF  M   ++V+SW +MI G   +G    A + F +M   G  P+ +
Sbjct: 302 AYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDL 361

Query: 293 TFLGLLCGCSHQGLVEEG--VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
           T+  +L        V E       H  V + N +        L+  Y +    E+AL + 
Sbjct: 362 TYSTIL-------TVSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIF 414

Query: 351 NTSSPSDPVLWRTLL------GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
                 D V W  +L      G C    N  I ++ M  L         ++ + + I AC
Sbjct: 415 KMIDQKDVVSWSAMLTCYAQAGDCNGATNAFI-KMTMHGL------KPNEFTISSAIDAC 467

Query: 405 TKDEEGVARTRKL 417
                GV   R+ 
Sbjct: 468 ASPAAGVDLGRQF 480


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 207/524 (39%), Positives = 301/524 (57%), Gaps = 25/524 (4%)

Query: 47  QIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT-FTFTLKACERVKAL 105
           Q Q+P   ++ S    F  + + L+AI   ++    S     T++ +   L++C   KA+
Sbjct: 33  QYQSPNP-SFTSSAPQFDNNQTHLKAIPSCSNPHAESTCLTPTYSNYASLLQSCIARKAI 91

Query: 106 NKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCY 165
              ++LH  V  +G+    V++T L+  Y     + +AR +FD +P+ ++  WN +I  Y
Sbjct: 92  KPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGY 151

Query: 166 TQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
                +  A++LY +M   D GL  D FT   +L +CA + A+  G  +H    + G+ +
Sbjct: 152 AWNGPYEAAVQLYYQMF--DYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEK 209

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD---VLSWNSMIVGYGVHGRGDEAISFFK 280
            V+VG AL+DMYAKCG + SA  VF ++  RD   V+SWN+MI GY +HG   EA+  F+
Sbjct: 210 DVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFE 269

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M      PD ITF+G+L  CSH GL+EEG  +F  M+  Y + P ++HY C+VDL G +
Sbjct: 270 EMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHS 328

Query: 341 GKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+L++A  +I       D  +W  LL SCKIH NVE+GEIA++ L++LE   AG+YV+L+
Sbjct: 329 GRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILS 388

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            IYA     EGVA+ RKL+    +K +   SWIE+ N+VH F+  D SHP +D IY +LE
Sbjct: 389 NIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELE 448

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
            +    K  GY+   S  +V     +D        HSE+LAIAFGL +TP GT L I KN
Sbjct: 449 RVGGLMKEAGYSP--STGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKN 506

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    R++ VRD  RYHHF+DG+CSCGDYW
Sbjct: 507 LRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 550


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 195/529 (36%), Positives = 302/529 (57%), Gaps = 26/529 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+LLF QI  P   ++N++I  +  +     ++  +  +L++   + ++ +    +    
Sbjct: 261 ARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSG-EKVNSSSIVGLIPVFF 319

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               L+  + +HGF  +SG      VST L   Y+    IE+AR +FD   E+ L SWN+
Sbjct: 320 PFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNA 379

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y Q     +A+ L++ M+  +V  +  T+  +LS+CA +GAL++G ++H +     
Sbjct: 380 MISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRES 439

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F  +++V  AL+DMYAKCG++  A  +FS M +++ ++WN+MI GYG+HG G EA++ F 
Sbjct: 440 FESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFN 499

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML +   P  +TFL +L  CSH GLV EG E F  MV  +  +P  +HY C+VDL GRA
Sbjct: 500 EMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRA 559

Query: 341 GKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G L+KAL+ I      P  PV W  LLG+C IH++  +  +A   L +L+  + G YVLL
Sbjct: 560 GNLDKALDFIRKMPVEPGPPV-WGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLL 618

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + IY+  ++    A  R ++K   +  TPG + IE+ N +H F   D+SHP A  IY  L
Sbjct: 619 SNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAML 678

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSS----AYHSEKLAIAFGLATTPDGTSL 514
           E++  + +  G+  +      +G++  D  E+        HSEKLAIAFGL T+  GT +
Sbjct: 679 EKLTGKMREAGFQTE------TGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEI 732

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI+KNLR            S    R ++VRD  R+HHF+DG+CSCGDYW
Sbjct: 733 RIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 152/294 (51%), Gaps = 15/294 (5%)

Query: 17  QAHEIHGEWLLN------------SYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFA 64
           Q ++ H + +LN            ++ +S   ++  A LLF+ I NP    +N LIRAF+
Sbjct: 25  QLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFS 84

Query: 65  QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCV 124
            + SP  A+  Y H+  ++   PD FT+ F +     +             I +G+   +
Sbjct: 85  LNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHS---IVAGFGSDL 141

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
            V + ++  Y     + AAR VFD M ERD V WN+++S   + S   EA+ ++  M   
Sbjct: 142 FVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKG 201

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            +G D  T+  +L   A +  L +G+ +  +A ++GF    YV   L  +Y+KCG +++A
Sbjct: 202 GIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETA 261

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
             +F ++ + D++S+N+MI GY  +   + ++  FK++L++G   +S + +GL+
Sbjct: 262 RLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 182/395 (46%), Gaps = 6/395 (1%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           S ++ A+ +F+ +    T  WN+++    ++    +AI  +  M+   +   D+ T    
Sbjct: 155 SRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGF-DSTTVAAV 213

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L     ++ L     +    ++ G+     V T L   Y+  G IE AR +F  + + DL
Sbjct: 214 LPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDL 273

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VS+N++IS YT  +    +++L++ +      ++  ++V L+      G L++   +H  
Sbjct: 274 VSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGF 333

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             + G V +  V  AL  +Y++   ++SA  +F    ++ + SWN+MI GY  +G  ++A
Sbjct: 334 CTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKA 393

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           IS F++M      P+ +T   +L  C+  G +  G ++ H +++R + +  I     L+D
Sbjct: 394 ISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG-KWVHDLINRESFESNIFVSTALID 452

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           +Y + G + +A  + +     + V W  ++    +H            ++    +  G  
Sbjct: 453 MYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTG-V 511

Query: 396 VLLATIYACTKD---EEGVARTRKLIKSNGIKTTP 427
             L+ +YAC+      EG    R ++  +G +  P
Sbjct: 512 TFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLP 546


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 191/529 (36%), Positives = 293/529 (55%), Gaps = 19/529 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A+L+F+ +      +WNS++  + Q+  P +AI  +  ML   +  P   T    L
Sbjct: 298 SVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGID-PTGVTIMEAL 356

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  +  L + + +H FV +      + V  +L+  Y+    ++ A  +F+N+  R  V
Sbjct: 357 HACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHV 416

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I  Y Q     EAL  +  M+   +  D FT+V ++ + A +       ++H + 
Sbjct: 417 SWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLI 476

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                 ++++V  ALVDMY+KCG +  A  +F  +  R V++WN+MI GYG HG G  A+
Sbjct: 477 IRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAAL 536

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F +M      P+ IT+L ++  CSH GLV+EG+ +F  M   Y L+P + HYG +VDL
Sbjct: 537 DLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDL 596

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG++++A + I  + P  P   ++    G+CKIH+N+E+GE A K L +L     G 
Sbjct: 597 LGRAGRIKEAWDFIE-NMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGY 655

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           +VLLA IYA T     VA  RK ++  G+K TPG S +E+ N+VH F     +HP +  I
Sbjct: 656 HVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRI 715

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y  LEE+++  K  GY  D +L+       +D  E+    HSEKLAIAFGL  T  GT++
Sbjct: 716 YAFLEELVYEIKAAGYVPDTNLIL---DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTI 772

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + KNLR            S+   R++IVRD  R+HHF++G+CSCGDYW
Sbjct: 773 HVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 191/348 (54%), Gaps = 5/348 (1%)

Query: 21  IHGEWLLNSYAISVSS---SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYN 77
           ++ E L  +  +S+ S   S++ A  +F  I +     ++++++ +A++ S   A+ +  
Sbjct: 77  LYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLC 136

Query: 78  HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
            M    + +P  + FT+ LK C     L + +E+HG +I + +   V   T ++  YA  
Sbjct: 137 RMRYDDV-KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKC 195

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
             I+ A  +FD MPERDLVSWN+II+ ++Q  F  +AL+L  RM+ E    D  TLV +L
Sbjct: 196 RQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVL 255

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
            + A VG L +G  +H  A   GF + V +  AL DMY+KCG++++A  +F  M ++ V+
Sbjct: 256 PAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVV 315

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           SWNSM+ GY  +G  ++AI+ F++ML  G  P  +T +  L  C+  G +E G ++ H  
Sbjct: 316 SWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG-KFVHKF 374

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           V + NL   I     L+ +Y +  +++ A ++ N  +    V W  ++
Sbjct: 375 VDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMI 422



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 213/428 (49%), Gaps = 22/428 (5%)

Query: 16  RQAHEIHGEWLLNSYAISVSS------------SLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           ++  EIHG+ + NS+A +V +             +  A  +F+++      +WN++I  F
Sbjct: 164 KRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGF 223

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           +Q+    +A+     M      RPD+ T    L A   V  L   + +HG+ IR+G+ + 
Sbjct: 224 SQNGFAKKALELVLRM-QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL 282

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V +ST L   Y+  G +E AR +FD M ++ +VSWNS++  Y Q     +A+ ++E+M  
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE 342

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           E +   G T++  L +CA +G L  G F+H+   ++     + V N+L+ MY+KC  +D 
Sbjct: 343 EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDI 402

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F+ +  R  +SWN+MI+GY  +GR  EA++ F +M   G  PDS T + ++   + 
Sbjct: 403 ASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAE 462

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
             +     ++ H ++ R  L   I     LVD+Y + G +  A ++ +  S    + W  
Sbjct: 463 LSVTRHA-KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNA 521

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYACTKD---EEGVARTRKLI 418
           ++     H    +G  A+    +++  A    D   L+ I AC+     +EG+   + + 
Sbjct: 522 MIDGYGTH---GLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMK 578

Query: 419 KSNGIKTT 426
           +  G++ +
Sbjct: 579 QDYGLEPS 586



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 128/270 (47%), Gaps = 4/270 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+ C  +K L++   L   VI++G     +  T L+  ++  G I  A  VF+ + ++  
Sbjct: 56  LELCTSMKELHQIIPL---VIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLD 112

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
             +++++  Y + S    AL    RMR++DV    +    LL  C     L  G  +H  
Sbjct: 113 ALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQ 172

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
                F  +V+    +V+MYAKC  +D A+ +F RM +RD++SWN++I G+  +G   +A
Sbjct: 173 LITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA 232

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +    +M   G  PDSIT + +L   +  GL+  G +  H    R      +     L D
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG-KSIHGYAIRAGFAKLVNISTALAD 291

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y + G +E A  + +       V W +++
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMM 321


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 199/561 (35%), Positives = 317/561 (56%), Gaps = 53/561 (9%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           Y   +FNQ+  P    +N+LIR +       ++  +Y+ M    +  P +FTFT   KAC
Sbjct: 98  YPLSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVV-PVSFTFTALFKAC 156

Query: 100 ERVKALNKCQELHG--------------------FVIRSGYERC------------VVVS 127
                +   +++HG                      I+ G+  C            V+  
Sbjct: 157 GAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISW 216

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           T L+  Y  +G +E+A  +FD +P +D+V+W  ++S + Q +   EA+  +E+M+   V 
Sbjct: 217 TELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVE 276

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIA--CEMGFVESVYVGNALVDMYAKCGNLDSAF 245
            D  TL+ ++S+CA +GA     ++  +A   E G   SV VG+AL+DMY+KCG++  A+
Sbjct: 277 TDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAY 336

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  M++R+V S++SMI+G+ +HGR  +A+  F +M+     P+ +TF+G+L  CSH G
Sbjct: 337 RVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAG 396

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRT 363
           +VE+G + F +M   Y +KP   HY C+VDL GRAG+L++A E++ T  P +P   +W  
Sbjct: 397 MVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKT-MPIEPHGGVWGA 455

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LLG+C+IH++ +I  IA  +L +LE    G+Y+LLA IYA       V+  RKL+++ G+
Sbjct: 456 LLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGL 515

Query: 424 KTTPGWSWIEI-GNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           +  P +SWIE     VH+F   D +HP +  I + LE+++ R +  GY     L +VS  
Sbjct: 516 RKNPAFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGY--QPHLSSVSYD 573

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
            +++   +    HSEKLA+AFGL +T  G+ +RIVKNLR            S    R++I
Sbjct: 574 VNDEDKRRILMTHSEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREII 633

Query: 531 VRDRVRYHHFRDGLCSCGDYW 551
           VRD +R+HHF DG+CSCG++W
Sbjct: 634 VRDIMRFHHFHDGICSCGNFW 654



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 6/214 (2%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S ++  A  LF+ +      AW  ++  FAQ+  P +AI ++  M    +   D  T   
Sbjct: 226 SGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVET-DEITLIG 284

Query: 95  TLKACERVKALNKCQELHGFVIRS--GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
            + AC ++ A      +     +S  G +  VVV + L+  Y+  G +  A  VF  M E
Sbjct: 285 VISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKE 344

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG--I 210
           R++ S++S+I  +       +A+KL++ M   ++  +  T + +L++C+H G +  G  I
Sbjct: 345 RNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQI 404

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
           F     C  G   S      +VD+  + G L  A
Sbjct: 405 FELMEKC-YGIKPSADHYTCMVDLLGRAGRLQEA 437


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 204/533 (38%), Positives = 291/533 (54%), Gaps = 25/533 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +FN I      +W+++I A+A      +A+  ++ M       P+  TFT    
Sbjct: 36  LDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFN 95

Query: 98  ACERVKALNKCQELHGFVIRSGYERC--VVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           AC  ++ L + +E+H   + SG  +    ++   L+  Y   G +E AR VFD M   D 
Sbjct: 96  ACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDA 155

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
            SW S+I+  T+    LEAL+L+ RM  E +     TL  +L++CA  GAL +G  +H  
Sbjct: 156 FSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSR 215

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
               GF  SV    AL+DMYAKCG+L+ +  VF+ M  R+ +SW +MI     HG+GDEA
Sbjct: 216 LDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEA 275

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  FK+M + G   D+ TF+ +L  CSH GL++E +E+FH MV  Y + P   HY   +D
Sbjct: 276 LELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALD 335

Query: 336 LYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
             GRAG+L+ A E+I+ S P  P  + W+TLL +C+IH   E      + L +L    + 
Sbjct: 336 TIGRAGRLQDAEELIH-SMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDSM 394

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            Y LL  +YA T       R RK +   G+K  PG S+IE+ N+VH+FV  D++HP  D 
Sbjct: 395 AYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDE 454

Query: 454 IYRKLEEIMHRAKFIGY---TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
           I  +LE++  R +  GY   TKD     V  + +E+  E+    HSEKLAIAFGL  TP 
Sbjct: 455 ILLELEKLGGRMREAGYVPNTKD-----VLHAVNEEEKEQLIGLHSEKLAIAFGLIATPP 509

Query: 511 GTSLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           GT L IVKNLR  +              R ++VRD  R+HHF DG CSC DYW
Sbjct: 510 GTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 142/302 (47%), Gaps = 9/302 (2%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           + +H  +   G+ R  +    L+  YA  G ++ AR++F+ + ER +VSW+++I  Y   
Sbjct: 5   RRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALH 64

Query: 169 SFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES--V 225
               EAL L+ RMR +  V  +  T   + ++C  +  L  G  +H +A   G ++S   
Sbjct: 65  GRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNA 124

Query: 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
            + NAL++MY +CG+L+ A  VF  M   D  SW SMI     +    EA+  F +M + 
Sbjct: 125 ILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLE 184

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
           G  P S+T   +L  C+  G ++ G +  H  +        +     L+D+Y + G LE 
Sbjct: 185 GIPPTSVTLASVLNACACSGALKVG-KQIHSRLDASGFHSSVLAQTALLDMYAKCGSLEC 243

Query: 346 ALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIYA 403
           + +V       + V W  ++ +   H     G+ A++    + LE   A     +  + A
Sbjct: 244 SSKVFTAMETRNSVSWTAMIAALAQHGQ---GDEALELFKEMNLEGMVADATTFICVLRA 300

Query: 404 CT 405
           C+
Sbjct: 301 CS 302


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 198/557 (35%), Positives = 297/557 (53%), Gaps = 61/557 (10%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +++  + +W  LI  F Q     +++  +N M  A L   D F     +  C 
Sbjct: 345 AKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQM-RAELMAVDQFALATLISGCC 403

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               +    +LH   ++SG+ R VVVS +L+  YA  G ++ A  +F+ M ERD+VSW  
Sbjct: 404 NTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTG 463

Query: 161 IISCYTQASFHLEA-------------------------------LKLYERMRFE-DVGL 188
           +I+ Y+Q     +A                               LK+Y  M  E DV  
Sbjct: 464 MITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIP 523

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
           D  T V L   CA +GA  +G  +     ++G +    V NA++ MY+KCG +  A   F
Sbjct: 524 DWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAF 583

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
             + ++D++SWN+MI GY  HG G +AI  F  +L  G  PD I+++ +L GCSH GLVE
Sbjct: 584 DFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVE 643

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLG 366
           EG  YF MM   +N+ PG++H+ C+VDL GRAG L +A  +I+   P  P   +W  LL 
Sbjct: 644 EGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLID-EMPMKPTAEVWGALLS 702

Query: 367 SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTT 426
           +CK H N ++ E+A K+L  L++  +G Y+LLA +YA     +  A+ RKL++  GIK +
Sbjct: 703 ACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKS 762

Query: 427 PGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSED 486
           PG+SW+E+ N+VH F  +D SHP    I  KL+E+M +   +GY + ES           
Sbjct: 763 PGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYVRTES----------- 811

Query: 487 FLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDR 534
              +S  +HSEKLA+AFG+ + P    + I+KNLR            S    R+ ++RD 
Sbjct: 812 --PRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDG 869

Query: 535 VRYHHFRDGLCSCGDYW 551
           VR+HHF+ G CSC DYW
Sbjct: 870 VRFHHFKGGSCSCMDYW 886



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 172/363 (47%), Gaps = 34/363 (9%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  + +A  +F  +      +WN +I A ++S    +A+     M    + RPD+ T+T 
Sbjct: 238 SHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGV-RPDSTTYTS 296

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           +L AC R+ +L   ++LH  VIR+       V++ ++  YA  G  + A+ VF ++ +R+
Sbjct: 297 SLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRN 356

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            VSW  +I  + Q     E+++L+ +MR E + +D F L  L+S C +   + +G  LH 
Sbjct: 357 SVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHS 416

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
           +  + G   +V V N+L+ MYAKCGNL +A  +F+ M +RD++SW  MI  Y   G   +
Sbjct: 417 LCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAK 476

Query: 275 AISFFKQM---------LMAGFH-----------------------PDSITFLGLLCGCS 302
           A  FF  M          M G +                       PD +T++ L  GC+
Sbjct: 477 AREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCA 536

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
             G  + G +     V +  L         ++ +Y + G++ +A +  +  S  D V W 
Sbjct: 537 DIGANKLGDQIIGHTV-KVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWN 595

Query: 363 TLL 365
            ++
Sbjct: 596 AMI 598



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 177/396 (44%), Gaps = 36/396 (9%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           G    AR +  ++  + + I    ++N YA     SLS A  LF ++      +WN+++ 
Sbjct: 74  GALSDARNLLRDEITEPNVITHNIMMNGYA--KLGSLSDAVELFGRMPTRDVASWNTIMS 131

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
            + QS   L A+  +  M     S P+ FTF   +K+C  +       +L G + +   +
Sbjct: 132 GYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQ 191

Query: 122 --------------RC-----------------VVVSTNLMRGYAANGVIEAARSVFDNM 150
                         RC                 ++   +++ GYA +  ++ A  +F +M
Sbjct: 192 DDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSM 251

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           PERD+VSWN +IS  +++    EAL +   M  + V  D  T    L++CA + +L  G 
Sbjct: 252 PERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGK 311

Query: 211 FLH-RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
            LH ++   +  ++  YV +A+V++YAKCG    A  VFS +R R+ +SW  +I G+  +
Sbjct: 312 QLHVQVIRNLPHIDP-YVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQY 370

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G   E++  F QM       D      L+ GC +   +  G +  H +  +      +  
Sbjct: 371 GCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQ-LHSLCLKSGHTRAVVV 429

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
              L+ +Y + G L+ A  + N  +  D V W  ++
Sbjct: 430 SNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMI 465



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 125/280 (44%), Gaps = 37/280 (13%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           E  V+    +M GYA  G +  A  +F  MP RD+ SWN+I+S Y Q+   L AL ++  
Sbjct: 89  EPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVS 148

Query: 181 MRFEDVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           MR     L + FT  C++ SC  +G   + + L  +  +    +   V  ALVDM  +CG
Sbjct: 149 MRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCG 208

Query: 240 NLDSAFCVFSR-------------------------------MRKRDVLSWNSMIVGYGV 268
            +D A   FSR                               M +RDV+SWN +I     
Sbjct: 209 AMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSK 268

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
            GR  EA+     M   G  PDS T+   L  C+    +E G +  H+ V R NL P I 
Sbjct: 269 SGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWG-KQLHVQVIR-NL-PHID 325

Query: 329 HY--GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            Y    +V+LY + G  ++A  V ++    + V W  L+G
Sbjct: 326 PYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIG 365



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 111/253 (43%), Gaps = 2/253 (0%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           W     A S   +++ A+  F+ +       WN+++ A+ Q  +    +  Y+ ML    
Sbjct: 461 WTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKD 520

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
             PD  T+    + C  + A     ++ G  ++ G      V   ++  Y+  G I  AR
Sbjct: 521 VIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEAR 580

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
             FD +  +DLVSWN++I+ Y+Q     +A+++++ +  +    D  + V +LS C+H G
Sbjct: 581 KAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSG 640

Query: 205 ALNMGIF-LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSM 262
            +  G F    +  +      +   + +VD+  + G+L  A  +   M  +     W ++
Sbjct: 641 LVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGAL 700

Query: 263 IVGYGVHGRGDEA 275
           +     HG  D A
Sbjct: 701 LSACKTHGNNDLA 713


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 207/568 (36%), Positives = 310/568 (54%), Gaps = 67/568 (11%)

Query: 40  YAQLLFNQIQNPQTQ-AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           YA+LL  +   P T  A NSL+RA A+   P  A   +  + +     PD ++FTF ++A
Sbjct: 150 YARLLLPR--RPATLLAHNSLLRALARGRRPHLAFGAFRDLPLV----PDNYSFTFLVRA 203

Query: 99  CERVKALNKCQ--------ELHGFVIRSGY------------------------------ 120
              + A              +H   +R G+                              
Sbjct: 204 ATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEI 263

Query: 121 -ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
               VV  T ++   A  G  +AAR +FD MP+RD V+WN++I+ Y       EAL+L++
Sbjct: 264 ASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFD 323

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
            MR     +   TLV  L++CA +GAL  G ++H  A   G   SV +G AL+DMY+KCG
Sbjct: 324 EMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCG 383

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            + +A  VF  M +R+V +W S + G  ++G G + ++ FK+M   G  P+ +TF+ +L 
Sbjct: 384 AVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLR 443

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP- 358
           GCS  GLV+EG   F  M S + + P ++HYGC+VDLYGRAG+L+ A+  IN   P +P 
Sbjct: 444 GCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFIN-GMPLEPH 502

Query: 359 -VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
             +W  LL + +IH+NVE+G+ AM  L+ +E+ +   +VLL+ IYA +++ +GV+  R +
Sbjct: 503 EGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNM 562

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD--ES 475
           +K+ G+K  PG S IE+G +VH+F V  K+HP    I   L E+  R +  GY  +  E 
Sbjct: 563 MKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEV 622

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
           L  +     ED +    + HSEKLAIAFGL   P+   +RIVKNLR            S 
Sbjct: 623 LFDIEEEDKEDAI----SLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISK 678

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            ++R++++RDR R+HHF+DG CSC DYW
Sbjct: 679 VFNREIVMRDRNRFHHFKDGACSCKDYW 706



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 2/215 (0%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A++       A+ LF+ +      AWN++I  +  +    +A+  ++ M  A  +  +  
Sbjct: 277 ALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEV- 335

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T    L AC ++ AL + + +H      G    V + T L+  Y+  G + AA  VFD+M
Sbjct: 336 TLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSM 395

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG- 209
            ER++ +W S +S         + L L++RM    V  +G T V +L  C+  G ++ G 
Sbjct: 396 GERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGR 455

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
                +    G    +     +VD+Y + G LD A
Sbjct: 456 ACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDA 490


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 193/530 (36%), Positives = 301/530 (56%), Gaps = 21/530 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++  A+ +F+ +Q+  + +WN++I+ +A++    +A+  +  M+   +   D       L
Sbjct: 377 AVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLA-AL 435

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  +  L++ + +H  ++R G E  V V   L+  Y      + A  VFD +  +  V
Sbjct: 436 HACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRV 495

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I   TQ     +A++L+ RM+ E+V  D FTLV ++ + A +       ++H  +
Sbjct: 496 SWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYS 555

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
             +   + VYV  AL+DMYAKCG +  A  +F+  R R V++WN+MI GYG HG G  A+
Sbjct: 556 IRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAV 615

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F++M  +G  P+  TFL +L  CSH GLV+EG EYF  M   Y L+PG++HYG +VDL
Sbjct: 616 ELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDL 675

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAGKL +A   I    P +P   ++  +LG+CK+H+NVE+ E + + + +LE      
Sbjct: 676 LGRAGKLHEAWSFIQ-KMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVY 734

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           +VLLA IYA     + VAR R  ++  G++ TPGWS +++ N++H F     +H  A  I
Sbjct: 735 HVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDI 794

Query: 455 YRKLEEIMHRAKFIGYTKD-ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           Y +L +++   K +GY  D +S+  V        L      HSEKLAIA+GL  T  GT+
Sbjct: 795 YARLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNT----HSEKLAIAYGLIRTAPGTT 850

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++I KNLR            S+   R++I+RD  R+HHF+DG CSCGDYW
Sbjct: 851 IQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 189/369 (51%), Gaps = 10/369 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+++      AWN+L+  +A++     A+     M      RPD  T    L AC 
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACA 338

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             +AL  C+E+H F +R G++  V VST ++  Y   G +++AR VFD M +R+ VSWN+
Sbjct: 339 DAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNA 398

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I  Y +     EAL L++RM  E V +   +++  L +C  +G L+ G  +H +   +G
Sbjct: 399 MIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIG 458

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              +V V NAL+ MY KC   D A  VF  +  +  +SWN+MI+G   +G  ++A+  F 
Sbjct: 459 LESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFS 518

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE--YFHMMVSRYNLKPGIKHYGCLVDLYG 338
           +M +    PDS T + ++   +    + + ++  + H    R +L   +     L+D+Y 
Sbjct: 519 RMQLENVKPDSFTLVSIIPALAD---ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYA 575

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYV 396
           + G++  A  + N++     + W  ++     H +   G++A++   +++++     +  
Sbjct: 576 KCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGS---GKVAVELFEEMKSSGKVPNETT 632

Query: 397 LLATIYACT 405
            L+ + AC+
Sbjct: 633 FLSVLSACS 641



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 165/345 (47%), Gaps = 3/345 (0%)

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           +RA A       A+  +  M  AS S P   TFT  LK C     L   + +H  +   G
Sbjct: 196 LRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARG 255

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
                + +T L   YA       AR VFD MP RD V+WN++++ Y +      A+ +  
Sbjct: 256 LSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVV 315

Query: 180 RMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
           RM+ ED    D  TLV +L +CA   AL     +H  A   GF E V V  A++D+Y KC
Sbjct: 316 RMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKC 375

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G +DSA  VF  M+ R+ +SWN+MI GY  +G   EA++ FK+M+  G     ++ L  L
Sbjct: 376 GAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAAL 435

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C   G ++EG    H ++ R  L+  +     L+ +Y +  + + A +V +       
Sbjct: 436 HACGELGFLDEG-RRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTR 494

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403
           V W  ++  C  + + E   + + + +QLE      + L++ I A
Sbjct: 495 VSWNAMILGCTQNGSSE-DAVRLFSRMQLENVKPDSFTLVSIIPA 538



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 3/214 (1%)

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           T   LL  CA    L  G  +H      G         AL +MYAKC     A  VF RM
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA-GFHPDSITFLGLLCGCSHQGLVEEG 310
             RD ++WN+++ GY  +G  + A+    +M    G  PD++T + +L  C+    +   
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI 370
            E  H    R      +     ++D+Y + G ++ A +V +     + V W  ++     
Sbjct: 347 RE-VHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAE 405

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
           + +        K +V  E     D  +LA ++AC
Sbjct: 406 NGDATEALALFKRMVG-EGVDVTDVSVLAALHAC 438


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 299/528 (56%), Gaps = 25/528 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           LS A+ +F+++      AW S+I  +A +     A       L   +   +  T+T  LK
Sbjct: 187 LSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVA-----RKLFEVMPDKNEVTWTAMLK 241

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
              R   +N+  EL     ++   + V     ++ G+  NG +  AR VFD M E+D  +
Sbjct: 242 GYTRSGRINEAAEL----FKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGT 297

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W+++I  Y +  F LEAL L+  M+ E V  +  +++ +LS C  + +L+ G  +H    
Sbjct: 298 WSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLV 357

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
              F   +YV + L+ MY KCG+L +   VF R   +D++ WNS+I GY  HG G++A+ 
Sbjct: 358 RSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALE 417

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M  +G  PD ITF+G+L  C + G V+EG+E F  M S+Y +    +HY C+VDL 
Sbjct: 418 VFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLL 477

Query: 338 GRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAGKL +A+ +I N    +D ++W  LL +C+ H+N+++ EIA K L+QLE +SAG Y+
Sbjct: 478 GRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYI 537

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV-VDDKSHPDADMIY 455
           LL+ +YA     + VA  RK +++  +  +PG SWIE+ N+VH F      SHP+ +MI 
Sbjct: 538 LLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIM 597

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           +KLE++    +  GY  D S V +     ED +  S  +HSEK+A+A+GL   P G  +R
Sbjct: 598 KKLEKLGASLREAGYCPDGSFV-MHDVDEEDKVH-SLRHHSEKMAVAYGLLKVPVGKPIR 655

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++KNLR            +    R++I+RD  R+HHF+DGLCSC D+W
Sbjct: 656 VMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 155/371 (41%), Gaps = 66/371 (17%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A+ +F+ +Q+    +WN+++  +  +  P +A   ++ M                  
Sbjct: 32  IDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM------------------ 73

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
                                  ER  +    L+ GY  NG+I  AR VFD MPER++VS
Sbjct: 74  ----------------------PERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVS 111

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W S++  Y Q     EA  L+ RM  ++V     +   +L      G ++      R   
Sbjct: 112 WTSMVRGYVQEGLIDEAELLFWRMPEKNV----VSWTVMLGGLIEDGRVDEA----RRLF 163

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +M  V+ V     ++      G L  A  +F  M +R+V++W SMI GY ++ + D A  
Sbjct: 164 DMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARK 223

Query: 278 FFKQMLMAGFHPD--SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
            F+ M      PD   +T+  +L G +  G + E  E F  M     +KP     G ++ 
Sbjct: 224 LFEVM------PDKNEVTWTAMLKGYTRSGRINEAAELFKAM----PVKPVAACNGMIMG 273

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH--RNVEIGEIAMKNLVQLEAASAG 393
            +G  G++ KA  V +     D   W  L+   KI+  +  E+  +A+ +L+Q E     
Sbjct: 274 -FGLNGEVGKARWVFDQMKEKDDGTWSALI---KIYERKGFELEALALFSLMQREGVRPN 329

Query: 394 DYVLLATIYAC 404
              +++ +  C
Sbjct: 330 FPSIISILSVC 340



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 165/392 (42%), Gaps = 44/392 (11%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQS--LSPLQAIF-----------------YYN---- 77
           AQ LF+++    T +WN L+  + ++  +S  + +F                 Y      
Sbjct: 66  AQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLI 125

Query: 78  ---HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGY 134
               +L   +   +  ++T  L        +++ + L   +      + VV STN++ G 
Sbjct: 126 DEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMI----PVKDVVASTNMIGGL 181

Query: 135 AANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLV 194
            + G +  AR +FD MP+R++V+W S+IS Y   +    A KL+E M  +    +  T  
Sbjct: 182 CSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK----NEVTWT 237

Query: 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
            +L      G +N    L +       V+ V   N ++  +   G +  A  VF +M+++
Sbjct: 238 AMLKGYTRSGRINEAAELFKAMP----VKPVAACNGMIMGFGLNGEVGKARWVFDQMKEK 293

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           D  +W+++I  Y   G   EA++ F  M   G  P+  + + +L  C     ++ G +  
Sbjct: 294 DDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQ-V 352

Query: 315 HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNV 374
           H  + R +    I     L+ +Y + G L     V +  S  D V+W +++     H   
Sbjct: 353 HSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQH--- 409

Query: 375 EIGEIAMKNLVQL--EAASAGDYVLLATIYAC 404
             GE A++   ++    A+  +   +  + AC
Sbjct: 410 GFGEKALEVFHEMFSSGAAPDEITFIGVLSAC 441



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 121/252 (48%), Gaps = 3/252 (1%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93
           ++  +  A+ +F+Q++      W++LI+ + +    L+A+  ++ M    + RP+  +  
Sbjct: 276 LNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGV-RPNFPSII 334

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
             L  C  + +L+  +++H  ++RS ++  + VS+ L+  Y   G +   + VFD    +
Sbjct: 335 SILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSK 394

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FL 212
           D+V WNSII+ Y Q  F  +AL+++  M       D  T + +LS+C + G +  G+   
Sbjct: 395 DIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIF 454

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGR 271
             +  +    +       +VD+  + G L+ A  +   M  + D + W +++     H  
Sbjct: 455 ESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKN 514

Query: 272 GDEAISFFKQML 283
            D A    K++L
Sbjct: 515 LDLAEIAAKKLL 526



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 120/278 (43%), Gaps = 18/278 (6%)

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
           RS +     ++   +  +A  G I+ AR++FD++  + + SWN+I++ Y       EA K
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           L+++M   +      +   L+S     G ++      R   +     +V    ++V  Y 
Sbjct: 69  LFDKMPERNT----ISWNGLVSGYVKNGMISEA----RKVFDKMPERNVVSWTSMVRGYV 120

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           + G +D A  +F RM +++V+SW  M+ G    GR DEA   F  + +     D +    
Sbjct: 121 QEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVK----DVVASTN 176

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
           ++ G   +G + E  E F  M  R      +  +  ++  Y    K++ A ++       
Sbjct: 177 MIGGLCSEGRLSEAREIFDEMPQR-----NVVAWTSMISGYAMNNKVDVARKLFEVMPDK 231

Query: 357 DPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           + V W  +L G  +  R  E  E+     V+  AA  G
Sbjct: 232 NEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNG 269


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 204/549 (37%), Positives = 300/549 (54%), Gaps = 56/549 (10%)

Query: 56  WNSLIRAF----AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111
           WN+LIRA     AQ   P  +       +     +PD  TF F L++      L+  + +
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF- 170
           H  ++R G      V T+L+  Y++ G +  AR VFD +P+ DL SWNSII+   QA   
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLV 146

Query: 171 ------------------------------HLEALKLYERMRF---EDVGLDGFTLVCLL 197
                                         + EAL L+  M+     DV  + FT+  +L
Sbjct: 147 DMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVL 206

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDV 256
           ++C  +GAL  G + H    + G    V +G AL+DMYAKCG+++ A  VFS +   +DV
Sbjct: 207 AACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDV 266

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           ++W++MI G  +HG  +E +  F +M+  G  P+++TFL + C C H GLV EG +Y   
Sbjct: 267 MAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRR 326

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNV 374
           M   Y++ P I+HYGC+VDLYGRAG++++A  V+  S P +P  ++W  LL   ++H ++
Sbjct: 327 MTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVK-SMPMEPDVLVWGALLSGSRMHGDI 385

Query: 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEI 434
           E  E+A+K L++LE  ++G YVLL+ +YA     E V   R L+++ GIK  PG S IE+
Sbjct: 386 ETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEV 445

Query: 435 GNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY 494
           G  +H+F V D SHP+   I+  LEEI+ R K  GY  +   V +     E+  E + + 
Sbjct: 446 GGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLL--DLDEEGKELALSL 503

Query: 495 HSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRD 542
           HSEKLA+A+G   T  GT +RIVKNLR            S  + R++IVRD  R+HHF  
Sbjct: 504 HSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQ 563

Query: 543 GLCSCGDYW 551
           GLCSC DYW
Sbjct: 564 GLCSCRDYW 572



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 41/261 (15%)

Query: 151 PERDLVSWNSIISCYTQASFHL-----EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           P  +   WN++I  + QA           + ++ RMRF  V  D  T   LL S A    
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL------------------------ 241
           L++G  +H      G     +V  +L+ MY+ CGNL                        
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINA 139

Query: 242 -------DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH---PDS 291
                  D A  +F+ M +R+V+SW+ MI GY   G+  EA++ F++M M G +   P+ 
Sbjct: 140 NFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNE 199

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
            T  G+L  C   G +E G ++ H  + +  +   +     L+D+Y + G +EKA  V +
Sbjct: 200 FTMSGVLAACGRLGALEHG-KWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFS 258

Query: 352 TSSPSDPVL-WRTLLGSCKIH 371
              P+  V+ W  ++    +H
Sbjct: 259 NLGPNKDVMAWSAMISGLAMH 279


>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
 gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
          Length = 640

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 206/554 (37%), Positives = 304/554 (54%), Gaps = 35/554 (6%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQI---QNPQTQ---AWNSLIRAFAQSLSPLQAIFYYNHM 79
           LL SY  S    L  A  L +++     P T    A+NS+I   A    P+ +   +  M
Sbjct: 94  LLTSY--SRLGCLPLAHQLLDEMPLESTPHTTLRTAFNSVISGCALHALPVASFALFRRM 151

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
             A++     F    TL A      L+   ++H    R G      V+  LM  YA  G 
Sbjct: 152 RAAAVG----FD-AVTLLALVPATPLSVVPQVHALAARVGLATETSVANCLMSTYARGGA 206

Query: 140 IEAA--RSVFDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRFED---VGLDGFT 192
             AA  R VFD MP   RDLVSWN+++S + Q    ++AL+LY RMR  +   V  D  T
Sbjct: 207 FGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPEGSGVEPDAVT 266

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEM--GFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
           +V +LSS AH+GA  +G  +     +   GF  +V + NAL++ +A+CG+L  A  +F  
Sbjct: 267 IVGVLSSAAHLGARGVGFDVEHYVRQRIPGFHTNVQLCNALINFHARCGSLPRAQQLFDE 326

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           M ++ ++SW ++I G+G+HG GD A+S F++M+  G  PD++  + L   CSH GL +EG
Sbjct: 327 MPRKSIVSWTALITGHGMHGNGDVAVSLFERMVSEGIRPDNVAMVALFSACSHAGLYDEG 386

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCK 369
             YF  M S Y L+P ++HY C+VDL GRAG+LE+A E+I++   P+D  +W  LLG+CK
Sbjct: 387 RRYFSAMESVYKLRPTLEHYTCMVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACK 446

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           IH+NV++GE A   +++LE  + G YVL++ IY  T   + VAR R +++  G+K  PG 
Sbjct: 447 IHKNVDVGEEAFTRVIELEPKNVGYYVLMSNIYTDTGQLDCVARVRAMMRERGLKKEPGC 506

Query: 430 SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
           S++E   +VH F+ DD SHP A  IY  +  +    K     ++  + A  G   +   +
Sbjct: 507 SYVEHKGRVHLFMADDHSHPQARRIYELVIRLELMVKEKSGMRESEVAAAKGRMEKAAAQ 566

Query: 490 KSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRY 537
                HSEKLA+AFGL  T  G+ + ++KNLR            S   +R  +VRD  R+
Sbjct: 567 PLVGIHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKVVSATTNRAFLVRDASRF 626

Query: 538 HHFRDGLCSCGDYW 551
           H F  G+CSC DYW
Sbjct: 627 HRFDGGVCSCKDYW 640


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 195/525 (37%), Positives = 289/525 (55%), Gaps = 18/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F  + N    AWN++I     S    +A   ++ ML   ++ PD  T+   L AC 
Sbjct: 300 AREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVA-PDRVTYLAILSACA 358

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R   L   +E+H   ++ G    V     L+  Y+  G ++ AR VFD MP+RD+VSW +
Sbjct: 359 RPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTA 418

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  Y      +E+   +++M  + V  +  T +C+L +C++  AL  G  +H    + G
Sbjct: 419 LVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAG 478

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               + V NAL+ MY KCG+++ A  V   M  RDV++WN++I G   +GRG EA+  F+
Sbjct: 479 IFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFE 538

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            M      P++ TF+ ++  C  + LVEEG   F  M   Y + P  KHY C+VD+  RA
Sbjct: 539 VMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARA 598

Query: 341 GKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G L +A +VI T  P  P   +W  LL +C+ H NVEIGE A +  ++LE  +AG YV L
Sbjct: 599 GHLGEAEDVILT-MPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSL 657

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + IYA       VA+ RKL+K  G+K  PG SWIE+  +VH FV  D+SHP  + IY +L
Sbjct: 658 SFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSEL 717

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           E +  + K +GY  D   V       ++  E++  +HSEKLAIA+GL +TP  T +R+ K
Sbjct: 718 EALTKQIKSLGYVPDTRFVM--HDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSK 775

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S    R++I RD  R+HHF++G CSCGDYW
Sbjct: 776 NLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 185/344 (53%), Gaps = 4/344 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA     S+  A+ +F+ + +    +W +L  A+A+S    +++  Y+ ML  
Sbjct: 183 GNALISMYA--KCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQE 240

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            + RP   T+   L AC  + AL K +++H  ++ S +   V VST L + Y   G ++ 
Sbjct: 241 GV-RPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKD 299

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR VF+ +P RD+++WN++I     +    EA  ++ RM  E V  D  T + +LS+CA 
Sbjct: 300 AREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACAR 359

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
            G L  G  +H  A + G V  V  GNAL++MY+K G++  A  VF RM KRDV+SW ++
Sbjct: 360 PGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTAL 419

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           + GY   G+  E+ S FK+ML  G   + IT++ +L  CS+   ++ G E  H  V +  
Sbjct: 420 VGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKE-IHAEVVKAG 478

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           +   +     L+ +Y + G +E A+ V    S  D V W TL+G
Sbjct: 479 IFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIG 522



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 160/330 (48%), Gaps = 2/330 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S++ A+ LF++  N    +WN +I  +A      +A   +  M    L  PD FTF   L
Sbjct: 94  SVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGL-EPDKFTFVSIL 152

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC    ALN  +E+H  V+ +G      V   L+  YA  G +  AR VFD M  RD V
Sbjct: 153 SACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEV 212

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW ++   Y ++ +  E+LK Y  M  E V     T + +LS+C  + AL  G  +H   
Sbjct: 213 SWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQI 272

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            E      V V  AL  MY KCG +  A  VF  +  RDV++WN+MI G    G+ +EA 
Sbjct: 273 VESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAH 332

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F +ML     PD +T+L +L  C+  G +  G E  H    +  L   ++    L+++
Sbjct: 333 GMFHRMLKECVAPDRVTYLAILSACARPGGLACGKE-IHARAVKDGLVSDVRFGNALINM 391

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           Y +AG ++ A +V +     D V W  L+G
Sbjct: 392 YSKAGSMKDARQVFDRMPKRDVVSWTALVG 421



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 140/282 (49%), Gaps = 1/282 (0%)

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
           S+ D++ +   L++C + K L   +++H  ++R G +  V +   L++ Y   G +  AR
Sbjct: 40  SQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEAR 99

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            +FD    + +VSWN +IS Y       EA  L+  M+ E +  D FT V +LS+C+   
Sbjct: 100 RLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPA 159

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           ALN G  +H    E G   +  VGNAL+ MYAKCG++  A  VF  M  RD +SW ++  
Sbjct: 160 ALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTG 219

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
            Y   G   E++  +  ML  G  P  IT++ +L  C     +E+G +  H  +      
Sbjct: 220 AYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKG-KQIHAQIVESEHH 278

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
             ++    L  +Y + G ++ A EV       D + W T++G
Sbjct: 279 SDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIG 320


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 208/576 (36%), Positives = 307/576 (53%), Gaps = 35/576 (6%)

Query: 2   GLKKHARYV--GLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSL 59
            ++ HAR +  G   +    + H   L    A+S S  L+YA+ +   +  P +  +N++
Sbjct: 9   AMQLHARILKSGAYDSNHGQDFHK--LFTFSALSPSGDLNYARHILRTLHTPNSFYYNTM 66

Query: 60  IRAFAQSLSPLQAIFYYNHM-----LMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           IRA++ S  P +A   + +M        ++ RPD FT+ F LKAC +       +++HG 
Sbjct: 67  IRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFGKQIHGL 126

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           V +SG      ++  L+  Y+ +G    A  VFD MP+RD+VSW SII  +      +EA
Sbjct: 127 VFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDNDRPIEA 186

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           ++L+  M    +  +  T+  +L +CA  GALN G  +H    E  F  +  V  AL+DM
Sbjct: 187 IRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVSTALIDM 246

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAKCG +D A  VF    ++DV  W ++I G   HG   +AI FF+ M  +    D    
Sbjct: 247 YAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAI 306

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
             +L    + GLV EG+ +F  +  ++ +KP I+HYGC+VD+  RAG+L+ A E I    
Sbjct: 307 TAVLSAYRNAGLVSEGLLFFRRL-KKHKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMP 365

Query: 355 -PSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIYACTKDEEGV 411
              D VLWRTL+  CKI  +VE  E  ++   L+ +++   G YVLL  +YA T   E  
Sbjct: 366 IEPDAVLWRTLIWGCKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAATGKWEEK 425

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
           A+TR+L+   G+   P  S IEI   VH+F   D  H +A  +Y KLE++  R +  GY 
Sbjct: 426 AKTRELMYQRGLMKPPACSRIEIDGVVHEFTAGDSRHDEATAVYEKLEDVEERLRGEGYN 485

Query: 472 K--DESLVAVSGSSSEDFLEKSSA--YHSEKLAIAFGLATTPDGTSLRIVKNLRSI---- 523
               E L+ +      D  EK+S   +HSEKLA++FGL  +  G+ +RIVKNLRS     
Sbjct: 486 PIVSEVLLEI------DDDEKASQLLHHSEKLAVSFGLVKSSPGSVIRIVKNLRSCEDCH 539

Query: 524 --------AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                    Y RD+IVRDR+R+HHF  G CSCGD W
Sbjct: 540 SFMKLISKVYQRDIIVRDRIRFHHFSGGNCSCGDRW 575


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 195/547 (35%), Positives = 311/547 (56%), Gaps = 21/547 (3%)

Query: 22  HGEWLLNSYAISVSS--SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM 79
           + E + N++  S +   SLSYA  +F  I++    +WN+LI  ++QS  P  ++  Y  M
Sbjct: 426 NNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQM 485

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
             + L  PD FT    L AC ++K+L   +E+HG +IR+  ER   V  +L+  Y   G 
Sbjct: 486 KSSGL-LPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGE 544

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           +  A  +FD M ++ LVSWN++++ Y Q  F   AL L+ +M    V     +++ +  +
Sbjct: 545 LSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGA 604

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           C+ + +L +G   H  A +    ++ ++  +++DMYAK G++  +F VF+ +++R V SW
Sbjct: 605 CSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASW 664

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           N+M++GYG+HGR  EAI  F++M   G  PD +TFLG+L  C+H GLV EG+ Y   M +
Sbjct: 665 NAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKT 724

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIG 377
            + + P +KHY C++D+  RAGKL++AL++       +P   +W  LL SC+IH+N+E+G
Sbjct: 725 LFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMG 784

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
           E     L   E     +YVLL+ +YA +   + V + R+ +K   ++   G SWIE+  +
Sbjct: 785 EKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGK 844

Query: 438 VHKFVVDDKSHPDADMIYRKLEEIMHRA-KFIGYTKDESLVAVSGSSSEDFLEKSSAYHS 496
           V  FV  + S    + I + L  ++ R    +GY  D S  +V    SE+   +    HS
Sbjct: 845 VFSFVAGESSLDGFEEI-KSLWSVLEREIGKMGYRPDTS--SVQHDLSEEEKTEQLRGHS 901

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           EKLAI +GL  T +GT+LR+ KNLR            S    R+++VRD  R+HHF++G 
Sbjct: 902 EKLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGF 961

Query: 545 CSCGDYW 551
           CSCGDYW
Sbjct: 962 CSCGDYW 968



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 161/345 (46%), Gaps = 16/345 (4%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S+  S   ++ +F+ ++      WN++I +++++      +  +  M+  S   PD FTF
Sbjct: 128 SMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTF 187

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              +KAC  V  +     +HG V+++     V VS  L+  Y  NG +  A  VF  MPE
Sbjct: 188 PCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPE 247

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL----DGFTLVCLLSSCAHVGALNM 208
           R+LVSWNS+I  ++      E   L  +M  +D  +    D  TL  +L  CA    + +
Sbjct: 248 RNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGV 307

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G  +H +A ++   + V V NAL+DMY+KCG ++ A  +F     ++V+SWN+M+ G+  
Sbjct: 308 GKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSA 367

Query: 269 HGRGDEAISFFKQMLMAG--FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
            G   +     +QML  G     D +T L  +  C  + ++   ++  H     Y+LK  
Sbjct: 368 AGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVL-PNLKELHC----YSLKQE 422

Query: 327 IKHYGCL-----VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
             H   L     V  Y + G L  A  V  +        W  L+G
Sbjct: 423 FVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIG 467



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 129/248 (52%), Gaps = 8/248 (3%)

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           V+ T ++  Y+  G  + +RSVFD + +++L  WN++IS Y++   +   L+++ +M  E
Sbjct: 118 VLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITE 177

Query: 185 DVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
             GL  D FT  C++ +CA V  + +G+ +H +  +   VE V+V NALV  Y   G++ 
Sbjct: 178 S-GLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVS 236

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA----GFHPDSITFLGLL 298
            A  VF  M +R+++SWNSMI  +  +G  +E      QM+       F PD  T   +L
Sbjct: 237 DALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVL 296

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C+    +  G +  H +  + +L   +     L+D+Y + G +  A  +   ++  + 
Sbjct: 297 PVCARDREIGVG-KGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNV 355

Query: 359 VLWRTLLG 366
           V W T++G
Sbjct: 356 VSWNTMVG 363


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 191/523 (36%), Positives = 291/523 (55%), Gaps = 20/523 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F  + NP   +WN+L+  F  S +  +    +  ML+    +P+ FTF   L++C  + 
Sbjct: 209 VFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGF-KPNMFTFISVLRSCSSLL 267

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
                +++H  +I++  +    V T L+  YA    +E A   FD +  RD+ SW  IIS
Sbjct: 268 DPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIIS 327

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y Q     +A+K + +M+ E +  + +TL   LS C+H+  L  G  LH +A + G   
Sbjct: 328 GYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFG 387

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            ++VG+ALVD+Y KCG ++ A  +F  +  RD++SWN++I GY  HG+G++A+  F+ ML
Sbjct: 388 DIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMML 447

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  PD  TF+G+L  CS  GLVEEG + F  M   Y + P I+HY C+VD+ GRAGK 
Sbjct: 448 SEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKF 507

Query: 344 EKA---LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
            +    +E +N +  S  ++W T+LG+CK+H NV+ GE A K L ++E      Y+LL+ 
Sbjct: 508 NEVKIFIEEMNLTPYS--LIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSN 565

Query: 401 IYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE 460
           I+A     + V   R L+ S GIK  PG SW+E+  QVH F+  D SHP    IY KL++
Sbjct: 566 IFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDK 625

Query: 461 IMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
           +      IGY     +V  + S+ E    +   YHSE+LA++F L +T     +RI KNL
Sbjct: 626 LGQSLMSIGYVPKTEVVLHNVSNKEKM--EHLYYHSERLALSFALLSTNAVKPIRIFKNL 683

Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R            S   +++++VRD  R+HHF+ G CSC D W
Sbjct: 684 RICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 181/392 (46%), Gaps = 18/392 (4%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F +I+NP   AW+++I    Q     +A   + H++    +RP+ FT +  +     + 
Sbjct: 108 VFTKIRNPDVVAWSAMITGLDQQGHGQEAAELF-HLMRRKGARPNQFTLSSLVSTATNMG 166

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L   Q +HG + + G+E   +VS  L+  Y  +  +E    VF+ M   DLVSWN+++S
Sbjct: 167 DLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLS 226

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            +  +       +++ +M  E    + FT + +L SC+ +     G  +H    +    +
Sbjct: 227 GFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDD 286

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
             +VG ALVDMYAK   L+ A   F R+  RD+ SW  +I GY    + ++A+ +F+QM 
Sbjct: 287 DDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQ 346

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG------CLVDLY 337
             G  P+  T    L GCSH   +E G +   + V     K G  H+G       LVDLY
Sbjct: 347 REGIKPNEYTLASCLSGCSHMATLENGRQLHAVAV-----KAG--HFGDIFVGSALVDLY 399

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
           G+ G +E A  +       D V W T++     H   E    A + ++  E     +   
Sbjct: 400 GKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLS-EGIMPDEATF 458

Query: 398 LATIYACT---KDEEGVARTRKLIKSNGIKTT 426
           +  + AC+     EEG  R   + K  GI  +
Sbjct: 459 IGVLSACSFMGLVEEGKKRFDSMSKIYGINPS 490



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 168/373 (45%), Gaps = 13/373 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A+ LF  +      +WN+L+  +AQ L   + +      +    ++   FT +  LK
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQ-LGDGKKVLKLFCKMKECETKFSKFTLSTVLK 59

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C    +L + + LH   +RSG E    +  +L+  Y+  G +  A  VF  +   D+V+
Sbjct: 60  GCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVA 119

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W+++I+   Q     EA +L+  MR +    + FTL  L+S+  ++G L  G  +H   C
Sbjct: 120 WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC 179

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY---GVHGRGDE 274
           + GF     V N L+ MY K   ++    VF  M   D++SWN+++ G+      GRG  
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPR 239

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
               F QML+ GF P+  TF+ +L  CS   L  E  +  H  + + +          LV
Sbjct: 240 ---IFYQMLLEGFKPNMFTFISVLRSCSSL-LDPEFGKQVHAHIIKNSSDDDDFVGTALV 295

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASA 392
           D+Y +A  LE A    +     D   W  ++     +   +  E A+K   Q+  E    
Sbjct: 296 DMYAKARCLEDAGVAFDRLVNRDIFSWTVIISG---YAQTDQAEKAVKYFRQMQREGIKP 352

Query: 393 GDYVLLATIYACT 405
            +Y L + +  C+
Sbjct: 353 NEYTLASCLSGCS 365


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 198/541 (36%), Positives = 311/541 (57%), Gaps = 22/541 (4%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           ++LN YA     SL  AQ LF+++      +W  LI  ++QS    +A+  +  ML    
Sbjct: 145 FILNMYA--KCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGF 202

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
            +P+ FT +  LKA     + +  ++LH F ++ GY+  V V ++L+  YA    +  A+
Sbjct: 203 -QPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAK 261

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            +F+++  +++VSWN++I+ + +       ++L+ +M  +      FT   +L+ CA  G
Sbjct: 262 VIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLA-CASSG 320

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           +L  G ++H    + G     Y+GN L+DMYAK G++  A  VF R+ K+D++SWNS+I 
Sbjct: 321 SLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIIS 380

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GY  HG G EA+  F+QML A   P+ ITFL +L  CSH GL++EG  YF +M  ++ ++
Sbjct: 381 GYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIE 439

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMK 382
             + H+  +VDL GRAG+L +A + I    P  P   +W  LLG+C++H+N+++G  A +
Sbjct: 440 AQVAHHVTVVDLLGRAGRLNEANKFIE-EMPIKPTAAVWGALLGACRMHKNMDLGVYAAE 498

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            + +L+   +G +VLL+ IYA        A+ RK++K +G+K  P  SW+EI N+VH FV
Sbjct: 499 QIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFV 558

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
            +D SHP  + I R  E+I  + K IGY  D S V    +  +  L+    YHSEKLA+A
Sbjct: 559 ANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQ--YHSEKLALA 616

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           F +  TP G ++RI KN+R            S    R++IVRD  R+HHF  G+CSC DY
Sbjct: 617 FAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDY 676

Query: 551 W 551
           W
Sbjct: 677 W 677



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 167/322 (51%), Gaps = 7/322 (2%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+   ++  L  C  ++ L + + +H  +  S +E  +V+   ++  YA  G +E A+ 
Sbjct: 102 EPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQD 161

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD MP +D+VSW  +IS Y+Q+    EAL L+ +M       + FTL  LL +     +
Sbjct: 162 LFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPS 221

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
            + G  LH  + + G+  +V+VG++L+DMYA+  ++  A  +F+ +  ++V+SWN++I G
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           +   G G+  +  F QML  GF P   T+  +L  C+  G +E+G ++ H  V +   +P
Sbjct: 282 HARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQG-KWVHAHVIKSGGQP 339

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
                  L+D+Y ++G ++ A +V       D V W +++     H    +G  A++   
Sbjct: 340 IAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQH---GLGAEALQLFE 396

Query: 386 QLEAA--SAGDYVLLATIYACT 405
           Q+  A     +   L+ + AC+
Sbjct: 397 QMLKAKVQPNEITFLSVLTACS 418


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 196/542 (36%), Positives = 298/542 (54%), Gaps = 17/542 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA      L YA+ +F+ +      +W+++I  +  S    +A+  ++ M++ 
Sbjct: 248 GTGLLDMYA--KCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILK 305

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
               P   T    L+AC ++  L++ ++LH ++I+ G    +++   L+  YA  GVI+ 
Sbjct: 306 DAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDD 365

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A   FD M  +D VS+++I+S   Q      AL ++  M+   +  D  T++ +L +C+H
Sbjct: 366 AIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSH 425

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL  G   H      GF     + NAL+DMY+KCG +  A  VF+RM + D++SWN+M
Sbjct: 426 LAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAM 485

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I+GYG+HG G EA+  F  +L  G  PD ITF+ LL  CSH GLV EG  +F  M   ++
Sbjct: 486 IIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFS 545

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           + P ++H  C+VD+ GRAG +++A   I N     D  +W  LL +C+IH+N+E+GE   
Sbjct: 546 IVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVS 605

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           K +  L   S G++VLL+ IY+     +  A  R   K  G+K  PG SWIEI   VH F
Sbjct: 606 KKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAF 665

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
           V  D+SH     I RKLEE++   K +GY  + S V       E   E+   YHSEKLAI
Sbjct: 666 VGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEK--EQILLYHSEKLAI 723

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           AFG+     G  + + KNLR            ++   R++ VRD  R+HHF++G C+CGD
Sbjct: 724 AFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGD 783

Query: 550 YW 551
           +W
Sbjct: 784 FW 785



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 178/366 (48%), Gaps = 4/366 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF++I NP    WN +IRA+A +     AI  Y+ ML   + RP+ +T+ F LKAC 
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGV-RPNKYTYPFVLKACS 120

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + A+    E+H      G E  V V T L+  YA  G++  A+ +F +M  RD+V+WN+
Sbjct: 121 GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNA 180

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+  +      +A++L  +M+ E +  +  T+V +L +     AL  G  LH       
Sbjct: 181 MIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS 240

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F   V VG  L+DMYAKC  L  A  +F  M  R+ +SW++MI GY       EA+  F 
Sbjct: 241 FDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFD 300

Query: 281 QMLMA-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           QM++     P  +T   +L  C+    +  G    H  + +      I     L+ +Y +
Sbjct: 301 QMILKDAMDPTPVTLGSVLRACAKLTDLSRG-RKLHCYIIKLGXVLDILLGNTLLSMYAK 359

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            G ++ A+   +  +P D V +  ++  C  + N  +  +++  ++QL         +L 
Sbjct: 360 CGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVA-LSIFRMMQLSGIDPDLTTMLG 418

Query: 400 TIYACT 405
            + AC+
Sbjct: 419 VLPACS 424



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 150/322 (46%), Gaps = 2/322 (0%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+AC + K+L + +++H   +++       V   L R Y +   +  AR +FD +P   +
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           + WN II  Y        A+ LY  M    V  + +T   +L +C+ + A+  G+ +H  
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSH 134

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A   G    V+V  ALVD YAKCG L  A  +FS M  RDV++WN+MI G  ++G  D+A
Sbjct: 135 AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDA 194

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +    QM   G  P+S T +G+L        +  G +  H    R +   G+     L+D
Sbjct: 195 VQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG-KALHGYCVRRSFDNGVVVGTGLLD 253

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           +Y +   L  A ++ +     + V W  ++G       ++        ++  +A      
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPV 313

Query: 396 VLLATIYACTKDEEGVARTRKL 417
            L + + AC K  + ++R RKL
Sbjct: 314 TLGSVLRACAKLTD-LSRGRKL 334


>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
          Length = 613

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 192/569 (33%), Positives = 315/569 (55%), Gaps = 25/569 (4%)

Query: 4   KKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           K HAR+V L   R            + A     S++YA  +F  + +P+   +N+L+R +
Sbjct: 49  KAHARHVKLGLDRSPRHARPLLAACALAADWPGSMAYAASIFAALDDPEAFDYNTLMRGY 108

Query: 64  AQSL-----SPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
                     P  A+  +  M+   +  PD++TF F  KAC ++ AL + ++L G +++ 
Sbjct: 109 VAGGGGGGRDPAAALRLFVDMVDDGVE-PDSYTFPFVFKACAQLGALQEGRQLQGHLVKL 167

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEALK 176
           G++R      +L+  Y   G  + AR  F+ M   E+   SW+++++ YT+A    E ++
Sbjct: 168 GFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVE 227

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
            +  M       D  ++V  LS+CAH+GA ++G  +H          + ++  +LVDMYA
Sbjct: 228 SFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYA 287

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           KCG +++A  VF  M  ++  ++++M+ G  +HG G +A+  F  M+  G  PD+  ++G
Sbjct: 288 KCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVG 347

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT--SS 354
           +L  CS  GL+EEG+  F  M   + L P  +HYGC+VDL  RAG+L+ A  +I    + 
Sbjct: 348 VLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIGNMPTG 407

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
           P+D   WR+LL +C+IH N+E+ E A++ L +L A +AGDY++L+ ++A   + +  A  
Sbjct: 408 PTD-TAWRSLLNACRIHGNLELAERALQELERLGATNAGDYIILSDMHARAHNRDAAAAR 466

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
           R      G+   PG+S +E+    H+FV  D+SHP AD IY  L ++  + +F GYT D 
Sbjct: 467 RTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSHPRADDIYEMLHQMEWQLRFEGYTPDT 526

Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
           S +A+     E    +  A HS+KLA+AFGL +TP+G  +R+V NLR            S
Sbjct: 527 SELALDAGEEEK--RRVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRMSKECHAYSALIS 584

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             + R+++VRDR R+H F+ G CSCG+YW
Sbjct: 585 EIFGREIVVRDRNRFHRFKRGACSCGNYW 613


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 197/530 (37%), Positives = 304/530 (57%), Gaps = 20/530 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F+++      +W ++I A++Q     +A+  +  ML +  + P+ FTF   L 
Sbjct: 113 LGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSD-TEPNHFTFATILT 171

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +C         +++H   I+  YE  + V ++L+  YA +G I  A  VF  +PERD+V+
Sbjct: 172 SCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVA 231

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
             +IIS Y Q     EALKL+ +++ E +  +  T   +L++ + + ALN G  +H    
Sbjct: 232 CTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVL 291

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             G    V + N+L+DMY+KCGN+  A  +F  M +R  +SWN+M+VGY  HG   E + 
Sbjct: 292 RSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLE 351

Query: 278 FFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS-RYNLKPGIKHYGCLVD 335
            FK M       PDSIT+L +L GCSH  L + G+E F+ MV+ +  ++P I HYGC+VD
Sbjct: 352 LFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVD 411

Query: 336 LYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L GRAG++E+A + I    P  P   +W +LLGSC++H +VEIG I  + L++LE  +AG
Sbjct: 412 LLGRAGRVEEAFDFIK-KMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAG 470

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
           +YV+L+ +YA     E +   R L++   +   PG SW+E+   VH F   D +HP  + 
Sbjct: 471 NYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREE 530

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           +  K++E+  + K  GY  D S V       E+  EK    HSEKLA+AFGL  TP+GT+
Sbjct: 531 VANKVKELSIKFKEDGYVPDLSCVLY--DVDEEQKEKVLLGHSEKLALAFGLIATPEGTT 588

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R++KNLR            S  Y+R +I+RD+ R+H+   G+CSCGDYW
Sbjct: 589 IRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 144/286 (50%), Gaps = 2/286 (0%)

Query: 81  MASLSRPDTFT-FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           MA L R   F  +   L  C   +A+ + Q +H  +I++ Y   V + T L+  Y     
Sbjct: 53  MAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDC 112

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           +  AR +FD MP+R++VSW ++IS Y+Q  F  EAL L+  M   D   + FT   +L+S
Sbjct: 113 LGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTS 172

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           C        G  +H IA +  +   ++VG++L+DMYAK G +  A  VF  + +RDV++ 
Sbjct: 173 CYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVAC 232

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
            ++I GY   G  +EA+  F+Q+ + G + +S+T+  +L   S    +  G +  H  V 
Sbjct: 233 TAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQ-VHSHVL 291

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           R      +     L+D+Y + G +  A  + ++      + W  +L
Sbjct: 292 RSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAML 337


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  354 bits (909), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 291/528 (55%), Gaps = 18/528 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  AQ LF+++       WN++I    Q     QA+  +  M       PD FT    L+
Sbjct: 144 LESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGF-LPDEFTLGSVLR 202

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C  +++L   QE+H  +++ G+E   VV ++L   Y  +G +     +  +MP R +V+
Sbjct: 203 GCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVA 262

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++I+   Q     E L  Y  M+      D  T V +LS+C+ +  L  G  +H    
Sbjct: 263 WNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVI 322

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G    + V ++L+ MY++ G L+ +   F      DV+ W+SMI  YG HGRG+EA+ 
Sbjct: 323 KAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALE 382

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM       + +TFL LL  CSH GL E+G EYF +MV +Y LKP I+HY C+VDL 
Sbjct: 383 LFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLL 442

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GRAG+LE+A  +I  S P  P  ++W+TLL +CK+H+  E+ E   + +++L+   A  Y
Sbjct: 443 GRAGRLEEAEGMIR-SMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASY 501

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ I+A  ++   V++ RK ++   ++  PG SW+E+ N VH+F + DKSHP    I 
Sbjct: 502 VLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEID 561

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
             L+E+M   K  GY  +  L +V      +  E + A+HSEK AIAF L  T +   +R
Sbjct: 562 LYLKELMSELKQHGYVPE--LGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIR 619

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++KNLR            S   +R++IVRD  R+HHF+DG CSCG+YW
Sbjct: 620 VMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 170/360 (47%), Gaps = 46/360 (12%)

Query: 88  DTFT---------FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
           DTFT         F+  L++C ++ +L   +++H  +I SG  +   +S +L+  Y+  G
Sbjct: 52  DTFTSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLG 111

Query: 139 VIEAARSVFDNMPERDLVS-------------------------------WNSIISCYTQ 167
             +++  +F NMP R+++S                               WN++I+  TQ
Sbjct: 112 QFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQ 171

Query: 168 ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227
             F+ +AL L++ M       D FTL  +L  CA + +L  G  +H    + GF  S  V
Sbjct: 172 FEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVV 231

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
           G++L  MY K G+L     +   M  R V++WN++I G   +G  +E ++ +  M MAGF
Sbjct: 232 GSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGF 291

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            PD ITF+ +L  CS    + +G +  H  V +      +     L+ +Y R+G LE ++
Sbjct: 292 RPDKITFVSVLSACSELATLGQG-QQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSI 350

Query: 348 EVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYACT 405
           +        D VLW +++ +   H     GE A++   Q+E     A +   L+ +YAC+
Sbjct: 351 KAFVDRENFDVVLWSSMIAAYGFHGR---GEEALELFHQMEDLKMEANEVTFLSLLYACS 407



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 33/242 (13%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL SC  +G+L  G  +H +    G  +  ++ N L++ Y+K G   S+  +FS M +R+
Sbjct: 68  LLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRN 127

Query: 256 VLS-------------------------------WNSMIVGYGVHGRGDEAISFFKQMLM 284
           V+S                               WN+MI G        +A+S FK+M  
Sbjct: 128 VMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYG 187

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            GF PD  T   +L GC+    +  G E  H  + +   +        L  +Y ++G L 
Sbjct: 188 LGFLPDEFTLGSVLRGCAGLRSLLAGQE-VHACLLKCGFELSSVVGSSLAHMYIKSGSLS 246

Query: 345 KALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
              ++I +      V W TL+   K         +   N++++          ++ + AC
Sbjct: 247 DGEKLIKSMPIRTVVAWNTLIAG-KAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSAC 305

Query: 405 TK 406
           ++
Sbjct: 306 SE 307


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  354 bits (909), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 195/528 (36%), Positives = 299/528 (56%), Gaps = 38/528 (7%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           W ++I  ++Q     +A+  +  M+ +  S P+  T    L AC  + A ++  E+H + 
Sbjct: 376 WTAVIAGYSQRGCSHEALNLFRQMIFSG-SLPNCVTIISVLSACASLGAFSQGTEIHAYS 434

Query: 116 IRS----------GYERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIIS 163
           +++          G +  ++V   L+  Y+     +AARS+FD++P  ER++V+W  +I 
Sbjct: 435 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 494

Query: 164 CYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
            + Q     +ALKL+  M  E  G+  + +T+ C+L +CAH+ A+ +G  +H        
Sbjct: 495 GHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHR 554

Query: 222 VES--VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
            ES   +V N L+DMY+KCG++D+A  VF  M ++  +SW SM+ GYG+HGRG EA+  F
Sbjct: 555 YESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIF 614

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
            +M  AGF PD ITFL +L  CSH G+V++G+ YF  M + Y L P  +HY C +DL  R
Sbjct: 615 DKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLAR 674

Query: 340 AGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
           +G+L+KA   +    P +P  V+W  LL +C++H NVE+ E A+  LV++ A + G Y L
Sbjct: 675 SGRLDKAWRTVK-DMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 733

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           ++ IYA     + VAR R L+K +GIK  PG SW++       F V D+SHP +  IY  
Sbjct: 734 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYAL 793

Query: 458 LEEIMHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           LE ++ R K +GY  +   +L  V      + L +    HSEKLA+A+GL TT  G  +R
Sbjct: 794 LESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVE----HSEKLALAYGLLTTSPGCPIR 849

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           I KNLR            S     +++VRD  R+HHF++G CSCG YW
Sbjct: 850 ITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 204/430 (47%), Gaps = 65/430 (15%)

Query: 37  SLSYAQLLFNQIQN---PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP-----D 88
           SL  A ++F++I         +WNS++ A  +S +   A+  ++ M +    +P     D
Sbjct: 212 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 271

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
             +    L AC  +KA+ + +E+HG  IR+G    V V   L+  YA  G++E A  VF+
Sbjct: 272 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFN 331

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD---------GF-------- 191
            M  +D+VSWN++++ Y+Q+     A +L++ MR E++ LD         G+        
Sbjct: 332 MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHE 391

Query: 192 ------------------TLVCLLSSCAHVGALNMGIFLHRIACEM----------GFVE 223
                             T++ +LS+CA +GA + G  +H  + +           G  E
Sbjct: 392 ALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE 451

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
            + V NAL+DMY+KC +  +A  +F    + +R+V++W  MI G+  +G  ++A+  F +
Sbjct: 452 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 511

Query: 282 MLMA--GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY--GCLVDLY 337
           M+    G  P++ T   +L  C+H   +  G +  H  V R++      ++   CL+D+Y
Sbjct: 512 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQ-IHAYVLRHHRYESSAYFVANCLIDMY 570

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDY 395
            + G ++ A  V ++ S    + W +++    +H     G  A+    ++  A     D 
Sbjct: 571 SKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGR---GSEALDIFDKMRKAGFVPDDI 627

Query: 396 VLLATIYACT 405
             L  +YAC+
Sbjct: 628 TFLVVLYACS 637



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 143/288 (49%), Gaps = 10/288 (3%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           YA L+  ++       WN LIR   +      AI     ML A  +RPD FT    LKAC
Sbjct: 114 YALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG-TRPDHFTLPHVLKAC 172

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER---DLV 156
             + +       HG +  +G+E  V +   L+  Y+  G +E A  +FD + +R   D++
Sbjct: 173 GELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 232

Query: 157 SWNSIISCYTQASFHLEALKLYERMRF------EDVGLDGFTLVCLLSSCAHVGALNMGI 210
           SWNSI+S + ++S    AL L+ +M         +   D  ++V +L +C  + A+    
Sbjct: 233 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 292

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H  A   G    V+VGNAL+D YAKCG +++A  VF+ M  +DV+SWN+M+ GY   G
Sbjct: 293 EVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 352

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
             + A   FK M       D +T+  ++ G S +G   E +  F  M+
Sbjct: 353 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMI 400



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 118/268 (44%), Gaps = 10/268 (3%)

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           + T ++  Y A G  + A  V + +     V WN +I  + +      A+ +  RM    
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
              D FTL  +L +C  + +   G   H + C  GF  +V++ NALV MY++CG+L+ A 
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 217

Query: 246 CVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQM-LMAGFHP-----DSITFLG 296
            +F  + +R   DV+SWNS++  +        A+  F +M L+    P     D I+ + 
Sbjct: 218 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 277

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
           +L  C     V +  E  H    R    P +     L+D Y + G +E A++V N     
Sbjct: 278 ILPACGSLKAVPQTKE-VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 336

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
           D V W  ++       N E      KN+
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAFELFKNM 364



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 4/150 (2%)

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F+    +G  +V  Y  CG  D A  V  R+     + WN +I  +   GR D AI+   
Sbjct: 92  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 151

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML AG  PD  T   +L  C        G   FH ++     +  +     LV +Y R 
Sbjct: 152 RMLRAGTRPDHFTLPHVLKACGELPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRC 210

Query: 341 GKLEKA---LEVINTSSPSDPVLWRTLLGS 367
           G LE+A    + I      D + W +++ +
Sbjct: 211 GSLEEASMIFDEITQRGIDDVISWNSIVSA 240


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  354 bits (909), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 195/512 (38%), Positives = 300/512 (58%), Gaps = 23/512 (4%)

Query: 55  AWNSLIRAFAQSLS-PLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
           +W ++I    Q+   PL A  +    +     +P+ FT++  L A   +       ++H 
Sbjct: 371 SWTAMIGGCIQNADIPLAAALFSR--MREDNVKPNEFTYSTVLTASIPILL----PQIHA 424

Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
            +I++ Y+    V T L+  Y+  G  E A S+F  +  +D+V+W++++SCY+QA     
Sbjct: 425 QIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDG 484

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALV 232
           A  ++ +M  + +  + FT+   + +CA   A ++ G   H I+ +  + +++ VG+ALV
Sbjct: 485 ATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALV 544

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
            MYA+ G++DSA  VF R   RD++SWNSMI GY  HG   EA+  F+QM   G   D  
Sbjct: 545 TMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGA 604

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TFL ++ GC+H GLV+EG +YF  MV  +N+ P ++HY C+VDLY RAGKL++ + +I  
Sbjct: 605 TFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEG 664

Query: 353 SS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
              P+  ++WRTLLG+C++H+NVE+G++A + L+ LE   +  YVLL+ IYA     +  
Sbjct: 665 MPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKER 724

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
              RKL+ S  +K   G SWI+I N+VH F+  DKSHP ++ IY KL+ +  R K  GY 
Sbjct: 725 DEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYC 784

Query: 472 KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
            + S+V      +E+  E     HSE+LA+AFGL  TP  T L+IVKNLR          
Sbjct: 785 PNTSVVL--HDIAEEQKETMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVMK 842

Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             S+   R++I+RD  R+HHF  G CSCGD+W
Sbjct: 843 MVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 146/286 (51%), Gaps = 7/286 (2%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVV-VSTNLMRGYAANGVIEAARSVFDNMPERD 154
           LK C  +      ++LH   ++ G++R  V V T L+  Y   G +E  R VF+ MP+R+
Sbjct: 106 LKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRN 165

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +V+W S+++ Y Q     + + L+ RMR E V  + FT   +LS+ A  GA+++G  +H 
Sbjct: 166 VVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHA 225

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            + + G   +V+V N+L++MY+KCG ++ A  VF +M  RD++SWN+++ G  ++    E
Sbjct: 226 QSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLE 285

Query: 275 AISFF--KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           A+  F   +  MA     + + +  LC    Q  +       H  V ++           
Sbjct: 286 ALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLAL---ARQLHSCVLKHGFHSDGNVMTA 342

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVL-WRTLLGSCKIHRNVEIG 377
           ++D Y + G+L+ A  +      S  V+ W  ++G C  + ++ + 
Sbjct: 343 IMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLA 388



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 184/388 (47%), Gaps = 23/388 (5%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S    +  A+ +F Q++     +WN+L+     +   L+A+  + H   AS++
Sbjct: 242 LINMY--SKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLF-HDSRASMA 298

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +    T++  +K C  +K L   ++LH  V++ G+     V T +M  Y+  G ++ A +
Sbjct: 299 KLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFN 358

Query: 146 VFDNMP-ERDLVSWNSII-SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           +F  MP  +++VSW ++I  C   A   L A  L+ RMR ++V  + FT   +L++    
Sbjct: 359 IFLLMPGSQNVVSWTAMIGGCIQNADIPLAA-ALFSRMREDNVKPNEFTYSTVLTA---- 413

Query: 204 GALNMGIFLHRIACEM---GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
              ++ I L +I  ++    +  +  VG AL+  Y+K GN + A  +F  +  +DV++W+
Sbjct: 414 ---SIPILLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWS 470

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC-SHQGLVEEGVEYFHMMVS 319
           +M+  Y   G  D A + F +M M G  P+  T    +  C S    +++G + FH +  
Sbjct: 471 AMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQ-FHAISI 529

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEI 379
           +Y  +  I     LV +Y R G ++ A  V    +  D V W +++     H      + 
Sbjct: 530 KYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQH---GYSKE 586

Query: 380 AMKNLVQLEAA--SAGDYVLLATIYACT 405
           A+    Q+E           LA I  CT
Sbjct: 587 ALDTFRQMETVGIEMDGATFLAVIVGCT 614



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 169/385 (43%), Gaps = 24/385 (6%)

Query: 42  QLLFNQIQNPQTQAWNSLIRAFAQ--SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           +++F  +       W SL+  + Q  + S + A+F+    + A    P+ FTFT  L A 
Sbjct: 155 RVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFR---MRAEGVWPNPFTFTSVLSAV 211

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
               A++  + +H   ++ G    V V  +L+  Y+  G++E A++VF  M  RD+VSWN
Sbjct: 212 ASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWN 271

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++++        LEAL+L+   R     L   T   ++  CA++  L +   LH    + 
Sbjct: 272 TLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKH 331

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISF 278
           GF     V  A++D Y+KCG LD AF +F  M   ++V+SW +MI G   +     A + 
Sbjct: 332 GFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAAL 391

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M      P+  T+  +L        +   +   H  + + N +        L+  Y 
Sbjct: 392 FSRMREDNVKPNEFTYSTVLTAS-----IPILLPQIHAQIIKTNYQHAPSVGTALLASYS 446

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL------GSCKIHRNVEIGEIAMKNLVQLEAASA 392
           + G  E+AL +       D V W  +L      G C    NV I        + ++    
Sbjct: 447 KLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIK-------MSMQGMKP 499

Query: 393 GDYVLLATIYACTKDEEGVARTRKL 417
            ++ + + I AC     G+ + R+ 
Sbjct: 500 NEFTISSAIDACASPTAGIDQGRQF 524



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 108/235 (45%), Gaps = 18/235 (7%)

Query: 143 ARSVFDNMPERDLVSWNS-----IISCYTQASFHLEALKLYERMRFEDV----GLDGFTL 193
           AR   D MP RD  + +S     I+    +     EAL       F DV     + G  +
Sbjct: 48  ARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEALD-----HFVDVHRCGRVQGAAV 102

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMR 252
             +L  C  +     G  LH +  + GF  + V VG ALVDMY KCG ++    VF  M 
Sbjct: 103 SRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMP 162

Query: 253 KRDVLSWNSMIVGYGVHGRG-DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
           KR+V++W S++ GY V GR   + ++ F +M   G  P+  TF  +L   + QG V+ G 
Sbjct: 163 KRNVVTWTSLLTGY-VQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLG- 220

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
              H    ++  +  +     L+++Y + G +E+A  V       D V W TL+ 
Sbjct: 221 RRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMA 275


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 211/565 (37%), Positives = 311/565 (55%), Gaps = 51/565 (9%)

Query: 13  NKARQAHEIHGEWLL-----NSYAIS--VSSS-----LSYAQLLFNQIQNPQTQAWNSLI 60
           N   Q H+IH +  L     NS  ++  +SSS     L YA  +F    +P    +N+LI
Sbjct: 51  NTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALI 110

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
           R  A++     ++ ++  ML  S+ RPD  T  F LK+   +  +   + LHG V++ G 
Sbjct: 111 RGLAENSRFEGSVSHFVLMLRLSI-RPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGL 169

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           E    V  +L+  Y   G +     +FD  P+R+                  E++ L+  
Sbjct: 170 EFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRN----------------KAESILLWNG 213

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           +R  D+     T+V  L +C  +GAL +G  +H      GF  +  +G ALVDMYAKCGN
Sbjct: 214 VRPNDL-----TVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGN 268

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           + SA  VF   + +D+L+W+ MI G+ +HG  D+A+  F +M  AG +PD + FL +L  
Sbjct: 269 IKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTA 328

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP-- 358
           CSH G V++G+ +F  M   Y+++P +KHY  +VDL GRAG+L++AL  I  S P +P  
Sbjct: 329 CSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQ-SMPINPDF 387

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
           V+W  L  +C+ H+N+E+ E+  + L+QLE    G YV L+ +YA     E V R R L+
Sbjct: 388 VIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLM 447

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
           K+ G++  PGWS+IE+  QVH FV  D +H  A+ I  KLEEI   AK  GY  + + V 
Sbjct: 448 KNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVL 507

Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
            +    E   E +   HSEKLA+AFGL +T  G+++RIVKNLR            S    
Sbjct: 508 HNIEEEEK--EDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSR 565

Query: 527 RDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++I+RD  R+HHF+DG CSCGDYW
Sbjct: 566 REIILRDIKRFHHFKDGTCSCGDYW 590


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 200/553 (36%), Positives = 302/553 (54%), Gaps = 49/553 (8%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LFN++      +W++LI  + Q+    +A+  +  M  A+  R D       L AC  + 
Sbjct: 260 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEM-NANGMRLDEVVVVSVLSACAHLS 318

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI----------------------- 140
            +   + +HG VIR G E  V +   L+  Y+ +G I                       
Sbjct: 319 IVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMIS 378

Query: 141 --------EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192
                   E AR++FD MPE+D+VSW+++IS Y Q     E L L+  M+   +  D   
Sbjct: 379 GCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETI 438

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
           LV ++S+C H+ AL+ G ++H    + G   +V +G  L+DMY KCG +++A  VF+ M 
Sbjct: 439 LVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGME 498

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           ++ V SWN++I+G  V+G  + ++  F +M   G  P+ ITF+G+L  C H GLV+EG  
Sbjct: 499 EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRC 558

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKI 370
           +F  M+ ++ ++P +KHYGC+VDL GRAG L +A ++I  S P  P    W  LLG+CK 
Sbjct: 559 HFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIE-SMPMAPDVATWGALLGACKK 617

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS 430
           H + E+GE   + L++L+    G +VLL+ I+A   D E V   R ++K  G+  TPG S
Sbjct: 618 HGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCS 677

Query: 431 WIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEK 490
            IE    VH+F+  DK+HP  + +   L E+  R K  GY  D + V++     E   E 
Sbjct: 678 LIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEK--ET 735

Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYH 538
           +   HSEKLAIAFGL T    T +RI+KNLR            S AY+R+++VRDR R+H
Sbjct: 736 TLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFH 795

Query: 539 HFRDGLCSCGDYW 551
           +F++G CSC DYW
Sbjct: 796 YFKEGACSCMDYW 808



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 182/432 (42%), Gaps = 97/432 (22%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L Y+  +F++I+N     WN+++RA+ QS S  +A+  Y  M+  ++  PD +T+   ++
Sbjct: 91  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVG-PDNYTYPLVVQ 149

Query: 98  ACERVKALN-KCQELHGFVIRSGYERCVVVSTNLMR------------------------ 132
           AC  V+ L    +E+H  V++ G++  V V   L+                         
Sbjct: 150 ACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSV 208

Query: 133 -------GYAANGVIEAARSVFDNMPER-------------------------------D 154
                  GY   G +E A+ +FD MP+R                               D
Sbjct: 209 SWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKD 268

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +VSW+++IS Y Q   + EAL ++  M    + LD   +V +LS+CAH+  +  G  +H 
Sbjct: 269 MVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHG 328

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM------------ 262
           +   MG    V + NAL+ MY+  G +  A  +F+     D +SWNSM            
Sbjct: 329 LVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEK 388

Query: 263 -------------------IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
                              I GY  H    E ++ F +M +    PD    + ++  C+H
Sbjct: 389 ARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTH 448

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
              +++G ++ H  + +  LK  +     L+D+Y + G +E ALEV N         W  
Sbjct: 449 LAALDQG-KWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNA 507

Query: 364 LLGSCKIHRNVE 375
           L+    ++  VE
Sbjct: 508 LIIGLAVNGLVE 519



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 152/373 (40%), Gaps = 73/373 (19%)

Query: 66  SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF------VIRSG 119
           SL  L  +   +  L ++ +   TF  T TL   E    L+ C  L  F      +I +G
Sbjct: 11  SLMKLSKLNQLSSALKSTFNHKPTFKPTITLSILE--THLHNCHNLKQFNRILSQMILTG 68

Query: 120 YERCVVVSTNLMRGYAANGVI--EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177
           +      ++ L++    +  I  + +  +FD +   +   WN+++  Y Q++   +AL L
Sbjct: 69  FISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLL 128

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIACEMGFVESVYVGNALVDMYA 236
           Y+ M   +VG D +T   ++ +CA V  L  G   +H    ++GF   VYV N L++MYA
Sbjct: 129 YKLMVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYA 187

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM-------------- 282
            CGN+  A  +F      D +SWNS++ GY   G  +EA   F QM              
Sbjct: 188 VCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVL 247

Query: 283 ------LMAGF-------HPDSITFLGLLCGCSHQGLVEEGVEYF--------------- 314
                 +M  +         D +++  L+ G    G+ EE +  F               
Sbjct: 248 LGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVV 307

Query: 315 -------------------HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
                              H +V R  ++  +     L+ +Y  +G++  A ++ N S  
Sbjct: 308 VSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHN 367

Query: 356 SDPVLWRTLLGSC 368
            D + W +++  C
Sbjct: 368 LDQISWNSMISGC 380



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 137/294 (46%), Gaps = 7/294 (2%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A+ LF+ +      +W+++I  +AQ     + +  ++ M +  + RPD       +
Sbjct: 385 SVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQI-RPDETILVSVI 443

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  + AL++ + +H ++ ++G +  V++ T L+  Y   G +E A  VF+ M E+ + 
Sbjct: 444 SACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVS 503

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRI 215
           SWN++I           +L ++  M+   V  +  T + +L +C H+G ++ G      +
Sbjct: 504 SWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASM 563

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDVLSWNSMIVGYGVHGRGDE 274
             + G   +V     +VD+  + G L+ A  +   M    DV +W +++     HG  + 
Sbjct: 564 IEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEM 623

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGC-SHQGLVEEGVEYFHMMVSRYNLK-PG 326
                ++++     PD   F  LL    + +G  E+ +E   MM  +  +K PG
Sbjct: 624 GERVGRKLI--ELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPG 675


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 196/530 (36%), Positives = 306/530 (57%), Gaps = 20/530 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF++I      +WN++I  + QS    +AI  +  M  A++  P+  T    L 
Sbjct: 213 LDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANV-LPNKSTMVVVLS 271

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC   ++    + +  +V  +G+   + ++  L+  Y   G  + AR +FD + E+D++S
Sbjct: 272 ACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVIS 331

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR-IA 216
           WN++I  Y+  S + EAL L+E M   +V  +  T + +L +CA +GAL++G ++H  I 
Sbjct: 332 WNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYID 391

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
             +    +  +  +L+DMYAKCG +++A  VF  M  R++ SWN+M+ G+ +HG  + A+
Sbjct: 392 KNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERAL 451

Query: 277 SFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           + F +M+  G F PD ITF+G+L  C+  GLV+ G +YF  M+  Y + P ++HYGC++D
Sbjct: 452 ALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMID 511

Query: 336 LYGRAGKLEKALEVI--NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L  RA K E+A E++  N     D  +W +LL +CK H  VE GE   + L QLE  +AG
Sbjct: 512 LLARAEKFEEA-EILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAG 570

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            +VLL+ IYA     + VAR R  +   G+K  PG + IEI   VH+F+V DK HP+ + 
Sbjct: 571 AFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNN 630

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           IY+ L E+    +  G+  + S V       E++ E + + HSEKLAI+FGL  T  GT+
Sbjct: 631 IYKMLNEVDKLLEENGFVPNTSEVLY--DMDEEWKEGALSQHSEKLAISFGLIKTKPGTT 688

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +RIVKNLR            S  ++R++I RDR R+HHF+DG CSC D W
Sbjct: 689 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDCW 738



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 215/437 (49%), Gaps = 42/437 (9%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQ---AWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           L++  A+S S  LSYA  LF + Q         WNSLIR ++ S SPL ++  ++ ML  
Sbjct: 66  LIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYY 125

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE--------------------- 121
            + +P++ TF F  K+C + KA ++ ++LH   ++                         
Sbjct: 126 GV-QPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDF 184

Query: 122 ----------RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
                     R  V  T L+ GY + G ++ AR +FD +P +D+VSWN++IS Y Q+   
Sbjct: 185 ARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRF 244

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
            EA+  +  M+  +V  +  T+V +LS+C H  +  +G ++     + GF  ++ + NAL
Sbjct: 245 EEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNAL 304

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           +DMY KCG  D A  +F  + ++DV+SWN+MI GY      +EA++ F+ ML +   P+ 
Sbjct: 305 IDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPND 364

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK--PGIKHYGCLVDLYGRAGKLEKALEV 349
           +TFLG+L  C+  G ++ G ++ H  + + NL+       +  L+D+Y + G +E A  V
Sbjct: 365 VTFLGILHACACLGALDLG-KWVHAYIDK-NLRNSSNASLWTSLIDMYAKCGCIEAAERV 422

Query: 350 INTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD-- 407
             +    +   W  +L    +H + E        +V        D   +  + ACT+   
Sbjct: 423 FRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGL 482

Query: 408 -EEGVARTRKLIKSNGI 423
            + G    R +I+  GI
Sbjct: 483 VDLGHQYFRSMIQDYGI 499


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 188/528 (35%), Positives = 299/528 (56%), Gaps = 18/528 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A ++   +      +W +LI  +AQ     +A+ ++  ML   + + D   F+  + 
Sbjct: 466 LDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGI-QSDNIGFSSAIS 524

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  ++ALN+ +++H     SGY   + +   L+  YA  G I+ A   F+ +  +D +S
Sbjct: 525 ACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSIS 584

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN +IS + Q+ +  +ALK++ +M    +    FT    +S+ A++  +  G  +H +  
Sbjct: 585 WNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMII 644

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + GF   + V NAL+  YAKCG+++ A   F  M +++ +SWN+MI GY  HG G+EA++
Sbjct: 645 KRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVN 704

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++M   G  P+ +TF+G+L  CSH GLV +G+ YF  M   + L P   HY C+VDL 
Sbjct: 705 LFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLI 764

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            RAG L +A + I    P +P   +WRTLL +C +H+NVE+GE A ++L++LE   +  Y
Sbjct: 765 SRAGFLSRARKFIE-EMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATY 823

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ +YA +   +   +TR+++++ G+K  PG SWIE+ N VH F V D+ HP AD IY
Sbjct: 824 VLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIY 883

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
             L E+  +A  IGY +D    ++     ++  + +   HSEKLAI FGL +  D   + 
Sbjct: 884 EFLAELNKKAAEIGYFQDR--YSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIH 941

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++KNLR            S   +R +IVRD  R+HHF  G+CSC DYW
Sbjct: 942 VMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 162/330 (49%), Gaps = 2/330 (0%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           S +  A  +F   Q      WN ++ AF +  +  ++   +  M +  L  P+ FT+   
Sbjct: 363 SDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLI-PNQFTYPSI 421

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+ C  V AL+  +++H  VI++G++  V V + L+  YA +G ++ A  +   + E D+
Sbjct: 422 LRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDV 481

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW ++IS Y Q +   EALK ++ M    +  D       +S+CA + ALN G  +H  
Sbjct: 482 VSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQ 541

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           +   G+ E + +GNALV +YA+CG +  A+  F ++  +D +SWN +I G+   G  ++A
Sbjct: 542 SYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDA 601

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F QM  A       TF   +   ++   +++G +  H M+ +      I+    L+ 
Sbjct: 602 LKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQ-IHAMIIKRGFDSDIEVSNALIT 660

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            Y + G +E A          + V W  ++
Sbjct: 661 FYAKCGSIEDARREFCEMPEKNDVSWNAMI 690



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 163/323 (50%), Gaps = 3/323 (0%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F  + N   ++W+ +I  F +     + +  ++ M+  ++S P   +F   L+AC   +
Sbjct: 67  VFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVS-PTEISFASVLRACSGHR 125

Query: 104 -ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
             +   +++H  +I  G     ++S  L+  YA NG+I +AR VFDN+  +D VSW ++I
Sbjct: 126 IGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMI 185

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           S ++Q  +  EA+ L+  M    +    +    +LS C  +   ++G  LH +  + G  
Sbjct: 186 SGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSS 245

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
              YV NALV +Y++  N  SA  VFS+M+ +D +S+NS+I G    G  D A+  F +M
Sbjct: 246 LETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKM 305

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
                 PD +T   LL  C+  G + +G E  H  V +  +   +   G L+DLY     
Sbjct: 306 KRDYLKPDCVTVASLLSACASNGALCKG-EQLHSYVIKAGISSDMIVEGALLDLYVNCSD 364

Query: 343 LEKALEVINTSSPSDPVLWRTLL 365
           ++ A E+  T+   + VLW  +L
Sbjct: 365 IKTAHEMFLTAQTENVVLWNVML 387



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 161/325 (49%), Gaps = 2/325 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +    + +W ++I  F+Q+    +AI  +  M  A +  P  + F+  L  C 
Sbjct: 166 ARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIF-PTPYVFSSVLSGCT 224

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++K  +  ++LH  V + G      V   L+  Y+      +A  VF  M  +D VS+NS
Sbjct: 225 KIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNS 284

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS   Q  F   AL+L+ +M+ + +  D  T+  LLS+CA  GAL  G  LH    + G
Sbjct: 285 LISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAG 344

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               + V  AL+D+Y  C ++ +A  +F   +  +V+ WN M+V +G      E+   F+
Sbjct: 345 ISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFR 404

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QM + G  P+  T+  +L  C+  G ++ G E  H  V +   +  +     L+D+Y + 
Sbjct: 405 QMQIKGLIPNQFTYPSILRTCTSVGALDLG-EQIHTQVIKTGFQFNVYVCSVLIDMYAKH 463

Query: 341 GKLEKALEVINTSSPSDPVLWRTLL 365
           GKL+ A  ++ T +  D V W  L+
Sbjct: 464 GKLDTAHVILRTLTEDDVVSWTALI 488



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 165/326 (50%), Gaps = 4/326 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+++Q+    ++NSLI   AQ      A+  +  M    L +PD  T    L AC 
Sbjct: 267 AEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYL-KPDCVTVASLLSACA 325

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
              AL K ++LH +VI++G    ++V   L+  Y     I+ A  +F      ++V WN 
Sbjct: 326 SNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNV 385

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  + +     E+ +++ +M+ + +  + FT   +L +C  VGAL++G  +H    + G
Sbjct: 386 MLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTG 445

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F  +VYV + L+DMYAK G LD+A  +   + + DV+SW ++I GY  H    EA+  FK
Sbjct: 446 FQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFK 505

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           +ML  G   D+I F   +  C+    + +G + +    VS Y+    I +   LV LY R
Sbjct: 506 EMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGN--ALVSLYAR 563

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLL 365
            G++++A          D + W  L+
Sbjct: 564 CGRIKEAYLEFEKIDAKDSISWNGLI 589



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 138/279 (49%), Gaps = 8/279 (2%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T+ + L  C    +L +C++LHG +++ G+    V+   L+  Y A G ++    VF++M
Sbjct: 12  TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDM 71

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA-HVGALNMG 209
           P R + SW+ IIS + +       L L+  M  E+V     +   +L +C+ H   +   
Sbjct: 72  PNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYA 131

Query: 210 IFLH-RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
             +H RI C  G + S  + N L+ +YAK G + SA  VF  +  +D +SW +MI G+  
Sbjct: 132 EQIHARIICH-GLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQ 190

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +G  +EAI  F +M  AG  P    F  +L GC+   L + G E  H +V +Y     ++
Sbjct: 191 NGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVG-EQLHALVFKYG--SSLE 247

Query: 329 HYGC--LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            Y C  LV LY R      A +V +     D V + +L+
Sbjct: 248 TYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLI 286


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 192/531 (36%), Positives = 302/531 (56%), Gaps = 17/531 (3%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  ++ AQ  F ++       W+ +I  +AQS    +A+  +  M  +S+  P+ FTF  
Sbjct: 253 SGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFAS 312

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L+AC  +  LN   ++H  V++ G +  V VS  LM  YA  G IE +  +F    E++
Sbjct: 313 VLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKN 372

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            V+WN+II  Y Q     +AL L+  M   D+     T   +L + A + AL  G  +H 
Sbjct: 373 EVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHS 432

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
           +  +  + +   V N+L+DMYAKCG +D A   F +M K+D +SWN++I GY +HG G E
Sbjct: 433 LTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGME 492

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A++ F  M  +   P+ +TF+G+L  CS+ GL+++G  +F  M+  Y ++P I+HY C+V
Sbjct: 493 ALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMV 552

Query: 335 DLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
            L GR+G+ ++A+++I    P  P  ++WR LLG+C IH+N+++G++  + ++++E    
Sbjct: 553 WLLGRSGQFDEAVKLIG-EIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDD 611

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
             +VLL+ +YA  K  + VA  RK +K   +K  PG SW+E    VH F V D SHP+  
Sbjct: 612 ATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIK 671

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
           +I+  LE +  + +  GY  D S+V +     E   E+    HSE+LA+AFGL   P G 
Sbjct: 672 LIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEK--ERLLWMHSERLALAFGLIQIPSGC 729

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           S+RI+KNLR            S    R++++RD  R+HHFR G+CSCGDYW
Sbjct: 730 SIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 163/329 (49%), Gaps = 3/329 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  LF+++    T ++ +L + F++S    Q        L       + F FT  LK
Sbjct: 54  LEDASKLFDEMPLTNTVSFVTLAQGFSRS-HQFQRARRLLLRLFREGYEVNQFVFTTLLK 112

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
               +   + C  +H +V + G++    V T L+  Y+  G ++AAR VFD +  +D+VS
Sbjct: 113 LLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVS 172

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W  +++CY +   H ++L L+ +MR      + FT+   L SC  + A  +G  +H  A 
Sbjct: 173 WTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCAL 232

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           ++ +   +YVG AL+++Y K G +  A   F  M K D++ W+ MI  Y    +  EA+ 
Sbjct: 233 KVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALE 292

Query: 278 FFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
            F +M  +    P++ TF  +L  C+   L+  G +  H  V +  L   +     L+D+
Sbjct: 293 LFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQ-IHSCVLKVGLDSNVFVSNALMDV 351

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           Y + G++E ++++   S+  + V W T++
Sbjct: 352 YAKCGEIENSVKLFTGSTEKNEVAWNTII 380



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 31/293 (10%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D+ ++   L+   R +  N  + LH  +++ G    +     L+  Y   G +E A  +F
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D MP  + VS+ ++   ++++     A +L  R+  E   ++ F    LL     +   +
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
             + +H    ++G     +VG AL+D Y+ CGN+D+A  VF  +  +D++SW  M+  Y 
Sbjct: 122 TCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYA 181

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +   ++++  F QM + G+ P++ T    L  C+       G+E F         K G 
Sbjct: 182 ENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCN-------GLEAF---------KVGK 225

Query: 328 KHYGC---------------LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             +GC               L++LY ++G++ +A +        D + W  ++
Sbjct: 226 SVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMI 278


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 195/530 (36%), Positives = 294/530 (55%), Gaps = 21/530 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A+L+F+++      +WNS+I  + Q+  P  A+  +  M+   +   +  T    L
Sbjct: 326 SVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNV-TVMGAL 384

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  +  + + + +H  + +      V V  +L+  Y+    ++ A  +F+N+  + LV
Sbjct: 385 HACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLV 444

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I  Y Q     EA+  + +M+ +++  D FT+V ++ + A +  L    ++H + 
Sbjct: 445 SWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLV 504

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                 ++V+V  ALVDMYAKCG + +A  +F  M +R V +WN+MI GYG HG G  A+
Sbjct: 505 IRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAAL 564

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F++M      P+ +TFL +L  CSH GLVEEG +YF  M   Y L+P + HYG +VDL
Sbjct: 565 ELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDL 624

Query: 337 YGRAGKLEKALEVINTSSPSDPVL--WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRA +L +A + I    P +P +  +  +LG+C+IH+NVE+GE A   +  L+    G 
Sbjct: 625 LGRANRLNEAWDFIQ-KMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGY 683

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           +VLLA IYA     + VAR R  ++  GI+ TPGWS +E+ N+VH F     SHP A  I
Sbjct: 684 HVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKI 743

Query: 455 YRKLEEIMHRAKFIGYTKDESLV-AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           Y  LE + +R K  GY  D + V  V     E  L      HSEKLAIAF L  T  GT+
Sbjct: 744 YAFLETLGNRIKAAGYMPDTNSVHDVEDVVKEQLLNS----HSEKLAIAFSLLNTSPGTT 799

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + + KNLR            S+   R++IVRD  R+HHF+DG CSCGDYW
Sbjct: 800 IHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 177/329 (53%), Gaps = 2/329 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A  +F  I++   + ++++++ +A++ S   A+ ++  M    + RP  + FT+ L
Sbjct: 124 SLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGV-RPVVYNFTYLL 182

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           K C     L K +E+H  +I +G+   V   T ++  YA   ++E A  +FD MPERDLV
Sbjct: 183 KVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLV 242

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            WN+IIS Y Q  F   AL+L  RM+ E    D  T+V +L + A VG+L +G  +H  +
Sbjct: 243 CWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYS 302

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              GF   V V  ALVDMY+KCG++ +A  +F RM  + V+SWNSMI GY  +G    A+
Sbjct: 303 MRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAM 362

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F++M+       ++T +G L  C+  G VE+G  + H ++ +  L   +     L+ +
Sbjct: 363 EIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG-RFVHKLLDQLELGSDVSVMNSLISM 421

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           Y +  +++ A E+         V W  ++
Sbjct: 422 YSKCKRVDIAAEIFENLQHKTLVSWNAMI 450



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 209/426 (49%), Gaps = 22/426 (5%)

Query: 16  RQAHEIHGEWLLNSYAISVSSSLSYAQL------------LFNQIQNPQTQAWNSLIRAF 63
           R+  EIH + ++N +A +V +      +            +F+++       WN++I  +
Sbjct: 192 RKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGY 251

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           AQ+     A+     M      RPD+ T    L A   V +L   + +HG+ +R+G+E  
Sbjct: 252 AQNGFGKTALELVLRM-QEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESF 310

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V VST L+  Y+  G +  AR +FD M  + +VSWNS+I  Y Q      A++++++M  
Sbjct: 311 VNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMD 370

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           E V +   T++  L +CA +G +  G F+H++  ++     V V N+L+ MY+KC  +D 
Sbjct: 371 EQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDI 430

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F  ++ + ++SWN+MI+GY  +GR +EAI +F +M +    PDS T + ++   + 
Sbjct: 431 AAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAE 490

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
             ++ +  ++ H +V R  L   +     LVD+Y + G +  A ++ +         W  
Sbjct: 491 LSVLPQA-KWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNA 549

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLATIYACTKD---EEGVARTRKLI 418
           ++     H    +G+ A++   ++  E     +   L  + AC+     EEG      + 
Sbjct: 550 MIDGYGTH---GLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMK 606

Query: 419 KSNGIK 424
           K  G++
Sbjct: 607 KDYGLE 612



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 127/264 (48%), Gaps = 12/264 (4%)

Query: 109 QELHGFV---IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCY 165
           +ELH F+   I++G     +  T L+  +   G +  A  VF  + ++    +++++  Y
Sbjct: 91  KELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGY 150

Query: 166 TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV 225
            + S   +A+  + RMR++ V    +    LL  C     L  G  +H      GF  +V
Sbjct: 151 ARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNV 210

Query: 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
           +    +V+MYAKC  ++ A+ +F RM +RD++ WN++I GY  +G G  A+    +M   
Sbjct: 211 FAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEE 270

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY----GCLVDLYGRAG 341
           G  PDSIT + +L   +  G +  G       +  Y+++ G + +      LVD+Y + G
Sbjct: 271 GKRPDSITIVSILPAVADVGSLRIGRS-----IHGYSMRAGFESFVNVSTALVDMYSKCG 325

Query: 342 KLEKALEVINTSSPSDPVLWRTLL 365
            +  A  + +  +    V W +++
Sbjct: 326 SVGTARLIFDRMTGKTVVSWNSMI 349


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  354 bits (908), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 186/501 (37%), Positives = 294/501 (58%), Gaps = 9/501 (1%)

Query: 27  LNSYAIS---VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS 83
           ++SY+I     S  L   Q +F+++      +WNS+I+A+  +  PL+AI  +  M ++ 
Sbjct: 202 IHSYSIKHGLESELLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSR 261

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG-YERCVVVSTNLMRGYAANGVIEA 142
           + +PD  T         ++  +  C+ + GF +R G +   + +   ++  YA  G++++
Sbjct: 262 I-QPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDS 320

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCA 201
           AR+VF+ +P  D++SWN+IIS Y Q  F  EA+++Y  M  E ++  +  T V +L +C+
Sbjct: 321 ARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACS 380

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
             GAL  G+ LH    + G    V+V  +L DMY KCG L+ A  +F ++ + + + WN+
Sbjct: 381 QAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNT 440

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           +I  +G HG G++A+  FK+ML  G  PD ITF+ LL  CSH GLV+EG   F MM + Y
Sbjct: 441 LIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDY 500

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIA 380
            + P +KHYGC+VD+YGRAG+LE AL+ I + S   D  +W  LL +C++H NV++G+IA
Sbjct: 501 GITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIA 560

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            ++L ++E    G +VLL+ +YA     EGV   R +    G++ TPGWS +E+ N+V  
Sbjct: 561 SEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEV 620

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           F   +++HP  + +YR+L  +  + K IGY  D   V       +D  E     HSE+LA
Sbjct: 621 FYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVL--QDVEDDEKEHILMSHSERLA 678

Query: 501 IAFGLATTPDGTSLRIVKNLR 521
           IAF L  TP  T++RI KNLR
Sbjct: 679 IAFALIATPAKTTIRIFKNLR 699



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 175/368 (47%), Gaps = 26/368 (7%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A++LF+++      +WN++I  + QS +  +A+   N      L   D+ T    L AC 
Sbjct: 137 ARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSN-----GLRAMDSVTVVSLLSACT 191

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
                N+   +H + I+ G E      + L+R           + VFD M  RDL+SWNS
Sbjct: 192 EAGDFNRGVTIHSYSIKHGLE------SELLRD---------CQKVFDRMYVRDLISWNS 236

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           II  Y      L A+ L++ MR   +  D  TL+ L S  + +G +     +       G
Sbjct: 237 IIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKG 296

Query: 221 -FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
            F+E + +GNA+V MYAK G +DSA  VF+ +   DV+SWN++I GY  +G   EAI  +
Sbjct: 297 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMY 356

Query: 280 KQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
             M   G    +  T++ +L  CS  G + +G++  H  + +  L   +     L D+YG
Sbjct: 357 NIMEEEGEIAANQGTWVSVLPACSQAGALRQGMK-LHGRLLKNGLYLDVFVVTSLADMYG 415

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           + G+LE AL +       + V W TL+     H + E   +  K +  L+     D++  
Sbjct: 416 KCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEM--LDEGVKPDHITF 473

Query: 399 ATIY-ACT 405
            T+  AC+
Sbjct: 474 VTLLSACS 481



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 179/370 (48%), Gaps = 38/370 (10%)

Query: 45  FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
           F+ IQN    AWN +I  + ++ +  + I  ++  +++S   PD  TF   LKAC  V  
Sbjct: 42  FDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID 101

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
            NK   +H   ++ G+   V V+ +L+  Y+    +  AR +FD MP RD+ SWN++IS 
Sbjct: 102 GNK---IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISG 158

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
           Y Q+    EAL L   +R     +D  T+V LLS+C   G  N G+ +H  + + G +ES
Sbjct: 159 YCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHG-LES 213

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
                   ++   C        VF RM  RD++SWNS+I  Y ++ +   AIS F++M +
Sbjct: 214 --------ELLRDCQK------VFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRL 259

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-----IKHYGCLVDLYGR 339
           +   PD +T + L    S  G +          V  + L+ G     I     +V +Y +
Sbjct: 260 SRIQPDCLTLISLASILSQLGDIRACRS-----VQGFTLRKGWFLEDITIGNAVVVMYAK 314

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE---AASAGDYV 396
            G ++ A  V N    +D + W T++ S           I M N+++ E   AA+ G +V
Sbjct: 315 LGLVDSARAVFNWLPNTDVISWNTII-SGYAQNGFASEAIEMYNIMEEEGEIAANQGTWV 373

Query: 397 LLATIYACTK 406
             + + AC++
Sbjct: 374 --SVLPACSQ 381


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 201/542 (37%), Positives = 301/542 (55%), Gaps = 25/542 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ YA      L  A L+F+ +       W SLI A+A+     +AI  ++ M    +S
Sbjct: 39  LLDMYA--KCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVS 96

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD FT T  L AC    +L   +++H ++  +  +  + V   LM  YA  G +E A S
Sbjct: 97  -PDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANS 155

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF  MP +D++SWN++I  Y++ S   EAL L+  M  E +  DG TL C+L +CA + +
Sbjct: 156 VFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLAS 214

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L+ G  +H      GF     V NALVDMY KCG    A  +F  +  +D+++W  MI G
Sbjct: 215 LDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAG 274

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           YG+HG G+ AI+ F +M  AG  PD ++F+ +L  CSH GL++EG  +F++M    N+KP
Sbjct: 275 YGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKP 334

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKN 383
            ++HY C+VDL  R+GKL  A + I  S P +P   +W  LL  C+IH +V++ E   ++
Sbjct: 335 KLEHYACIVDLLARSGKLAMAYKFIK-SMPIEPDATIWGALLSGCRIHHDVKLAEKVAEH 393

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           + +LE  + G YVLLA  YA  +  E V + R+ I   G+K  PG SWIE+ ++VH F+ 
Sbjct: 394 VFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLA 453

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY--HSEKLAI 501
            + SHP A  I   L+ +  + K  GY        ++     D L+K +A   HSEKLA+
Sbjct: 454 GNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINA----DSLQKETALCGHSEKLAM 509

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           AFG+   P   ++R+ KNLR            S    R++++RD  R+HHF+DG+C C  
Sbjct: 510 AFGILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRG 569

Query: 550 YW 551
           +W
Sbjct: 570 FW 571



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 154/316 (48%), Gaps = 15/316 (4%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCV----VVSTNLMRGYAANGVIEAARSVFDNMP 151
           L+AC     ++  + +HG    SG + CV         L+  YA  GV++ A  VFD M 
Sbjct: 5   LQACANCGDVSLGRAVHG----SGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
            R +V+W S+I+ Y +     EA++L+  M  E V  D FT+  +L +CA  G+L  G  
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H    E     +++V NAL+DMYAKCG+++ A  VF  M  +D++SWN+MI GY  +  
Sbjct: 121 VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
            +EA+S F  M++    PD  T   +L  C+    ++ G E  H  + R       +   
Sbjct: 181 PNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKE-VHGHILRNGFFSDQQVAN 238

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA- 390
            LVD+Y + G    A  + +     D + W  ++    +H     G  A+    ++  A 
Sbjct: 239 ALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMH---GFGNNAITTFNEMRQAG 295

Query: 391 -SAGDYVLLATIYACT 405
               +   ++ +YAC+
Sbjct: 296 IEPDEVSFISILYACS 311


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 196/542 (36%), Positives = 298/542 (54%), Gaps = 17/542 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA      L YA+ +F+ +      +W+++I  +  S    +A+  ++ M++ 
Sbjct: 248 GTGLLDMYA--KCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILK 305

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
               P   T    L+AC ++  L++ ++LH ++I+ G    +++   L+  YA  GVI+ 
Sbjct: 306 DAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDD 365

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A   FD M  +D VS+++I+S   Q      AL ++  M+   +  D  T++ +L +C+H
Sbjct: 366 AIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSH 425

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL  G   H      GF     + NAL+DMY+KCG +  A  VF+RM + D++SWN+M
Sbjct: 426 LAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAM 485

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I+GYG+HG G EA+  F  +L  G  PD ITF+ LL  CSH GLV EG  +F  M   ++
Sbjct: 486 IIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFS 545

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           + P ++H  C+VD+ GRAG +++A   I N     D  +W  LL +C+IH+N+E+GE   
Sbjct: 546 IVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVS 605

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           K +  L   S G++VLL+ IY+     +  A  R   K  G+K  PG SWIEI   VH F
Sbjct: 606 KKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAF 665

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
           V  D+SH     I RKLEE++   K +GY  + S V       E   E+   YHSEKLAI
Sbjct: 666 VGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEK--EQILLYHSEKLAI 723

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           AFG+     G  + + KNLR            ++   R++ VRD  R+HHF++G C+CGD
Sbjct: 724 AFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGD 783

Query: 550 YW 551
           +W
Sbjct: 784 FW 785



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 178/366 (48%), Gaps = 4/366 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF++I NP    WN +IRA+A +     AI  Y+ ML   + RP+ +T+ F LKAC 
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGV-RPNKYTYPFVLKACS 120

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + A+    E+H      G E  V V T L+  YA  G++  A+ +F +M  RD+V+WN+
Sbjct: 121 GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNA 180

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+  +      +A++L  +M+ E +  +  T+V +L +     AL  G  LH       
Sbjct: 181 MIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS 240

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F   V VG  L+DMYAKC  L  A  +F  M  R+ +SW++MI GY       EA+  F 
Sbjct: 241 FDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFD 300

Query: 281 QMLMA-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           QM++     P  +T   +L  C+    +  G    H  + +      I     L+ +Y +
Sbjct: 301 QMILKDAMDPTPVTLGSVLRACAKLTDLSRG-RKLHCYIIKLGSVLDILLGNTLLSMYAK 359

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            G ++ A+   +  +P D V +  ++  C  + N  +  +++  ++QL         +L 
Sbjct: 360 CGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVA-LSIFRMMQLSGIDPDLTTMLG 418

Query: 400 TIYACT 405
            + AC+
Sbjct: 419 VLPACS 424



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 150/322 (46%), Gaps = 2/322 (0%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+AC + K+L + +++H   +++       V   L R Y +   +  AR +FD +P   +
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           + WN II  Y        A+ LY  M    V  + +T   +L +C+ + A+  G+ +H  
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSH 134

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A   G    V+V  ALVD YAKCG L  A  +FS M  RDV++WN+MI G  ++G  D+A
Sbjct: 135 AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDA 194

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +    QM   G  P+S T +G+L        +  G +  H    R +   G+     L+D
Sbjct: 195 VQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG-KALHGYCVRRSFDNGVVVGTGLLD 253

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           +Y +   L  A ++ +     + V W  ++G       ++        ++  +A      
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPV 313

Query: 396 VLLATIYACTKDEEGVARTRKL 417
            L + + AC K  + ++R RKL
Sbjct: 314 TLGSVLRACAKLTD-LSRGRKL 334


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 192/525 (36%), Positives = 303/525 (57%), Gaps = 19/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  +F ++ +    +W S+I  +AQ+  P++A+  ++ M   ++ RPD       L+A  
Sbjct: 227 ANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNV-RPDWIALVSVLRAYT 285

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            V+ L   + +HG VI+ G E    +  +L   YA  G +  AR  F+ +    L+ WN+
Sbjct: 286 DVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNA 345

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y +  +  EA++L+  M+ +++  D  T+   +++CA +G+L +  ++        
Sbjct: 346 MISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSE 405

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F   V V  +L+D YAKCG++D A  VF R+  +DV+ W++M+VGYG+HG+G E+I  F 
Sbjct: 406 FRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFH 465

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            M  AG  P+ +TF+GLL  C + GLVEEG + FH M   Y ++P  +HY C+VDL GRA
Sbjct: 466 AMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRA 524

Query: 341 GKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G L++A   +  + P +P   +W  LL +CKIHR+V +GE A + L  L+  + G YV L
Sbjct: 525 GHLDRAYNFV-MNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQL 583

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + +YA +   + VA+ R L++  G+    G+S IEI  ++  F   DK+HP +  I+ ++
Sbjct: 584 SNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEV 643

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           E++  R K  G+      V    +  E   E++   HSE+LAIA+GL +TP GT+LRI K
Sbjct: 644 EDLERRLKEAGFVPHTESVLHDLNYEET--EETLCNHSERLAIAYGLISTPPGTTLRITK 701

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S   SR+++VRD  R+HHF+DG CSCGDYW
Sbjct: 702 NLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 179/376 (47%), Gaps = 6/376 (1%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +S A+ LF++  +P    WN+++R +++      AI  Y  M +A +S PD F+F   LK
Sbjct: 123 VSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVS-PDGFSFPCVLK 181

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  + AL   + +HG + R G+E  V V   L+  YA  G I  A +VF  + +R +VS
Sbjct: 182 ACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVS 241

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W SIIS Y Q    +EAL+++  MR  +V  D   LV +L +   V  L  G  +H    
Sbjct: 242 WTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVI 301

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +MG      +  +L  +YAKCG++  A   F+++    ++ WN+MI GY  +G  +EAI 
Sbjct: 302 KMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIE 361

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+ M      PDSIT    +  C+  G +E    +    +S    +  +     L+D Y
Sbjct: 362 LFRLMKSKNIRPDSITVTSSIAACAQIGSLELA-RWMDEYISMSEFRNDVIVNTSLIDTY 420

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
            + G ++ A  V +     D V+W  ++    +H       I    + Q    S  D   
Sbjct: 421 AKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQ-AGVSPNDVTF 479

Query: 398 LATIYACTKD---EEG 410
           +  + AC      EEG
Sbjct: 480 VGLLTACKNSGLVEEG 495



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 1/228 (0%)

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G +  AR +FD  P+ D+  WN+I+ CY++  F   A+++Y RM+   V  DGF+  C+L
Sbjct: 121 GEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVL 180

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
            +C+ + AL MG  +H      GF   V+V N LV +YAKCG +  A  VF R+  R ++
Sbjct: 181 KACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIV 240

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           SW S+I GY  +G+  EA+  F +M      PD I  + +L   +    +E G +  H  
Sbjct: 241 SWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHG-KSIHGC 299

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           V +  L+        L  LY + G +  A    N       + W  ++
Sbjct: 300 VIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMI 347



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           LV+  +  G +  A  +F +    DV  WN+++  Y  HG    AI  + +M +A   PD
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPD 172

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
             +F  +L  CS    +E G    H  + R+  +  +     LV LY + G++ +A  V 
Sbjct: 173 GFSFPCVLKACSALPALEMG-RRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVF 231

Query: 351 NTSSPSDPVLWRTLL 365
                   V W +++
Sbjct: 232 GRLVDRTIVSWTSII 246


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 195/528 (36%), Positives = 299/528 (56%), Gaps = 38/528 (7%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           W ++I  ++Q     +A+  +  M+ +  S P+  T    L AC  + A ++  E+H + 
Sbjct: 369 WTAVIAGYSQRGCSHEALNLFRQMIFSG-SLPNCVTIISVLSACASLGAFSQGTEIHAYS 427

Query: 116 IRS----------GYERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIIS 163
           +++          G +  ++V   L+  Y+     +AARS+FD++P  ER++V+W  +I 
Sbjct: 428 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 487

Query: 164 CYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
            + Q     +ALKL+  M  E  G+  + +T+ C+L +CAH+ A+ +G  +H        
Sbjct: 488 GHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHR 547

Query: 222 VES--VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
            ES   +V N L+DMY+KCG++D+A  VF  M ++  +SW SM+ GYG+HGRG EA+  F
Sbjct: 548 YESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIF 607

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
            +M  AGF PD ITFL +L  CSH G+V++G+ YF  M + Y L P  +HY C +DL  R
Sbjct: 608 DKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLAR 667

Query: 340 AGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
           +G+L+KA   +    P +P  V+W  LL +C++H NVE+ E A+  LV++ A + G Y L
Sbjct: 668 SGRLDKAWRTVK-DMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 726

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           ++ IYA     + VAR R L+K +GIK  PG SW++       F V D+SHP +  IY  
Sbjct: 727 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYAL 786

Query: 458 LEEIMHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           LE ++ R K +GY  +   +L  V      + L +    HSEKLA+A+GL TT  G  +R
Sbjct: 787 LESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVE----HSEKLALAYGLLTTSPGCPIR 842

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           I KNLR            S     +++VRD  R+HHF++G CSCG YW
Sbjct: 843 ITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 204/430 (47%), Gaps = 65/430 (15%)

Query: 37  SLSYAQLLFNQIQN---PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP-----D 88
           SL  A ++F++I         +WNS++ A  +S +   A+  ++ M +    +P     D
Sbjct: 205 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 264

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
             +    L AC  +KA+ + +E+HG  IR+G    V V   L+  YA  G++E A  VF+
Sbjct: 265 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFN 324

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD---------GF-------- 191
            M  +D+VSWN++++ Y+Q+     A +L++ MR E++ LD         G+        
Sbjct: 325 MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHE 384

Query: 192 ------------------TLVCLLSSCAHVGALNMGIFLHRIACEM----------GFVE 223
                             T++ +LS+CA +GA + G  +H  + +           G  E
Sbjct: 385 ALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE 444

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
            + V NAL+DMY+KC +  +A  +F    + +R+V++W  MI G+  +G  ++A+  F +
Sbjct: 445 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 504

Query: 282 MLMA--GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY--GCLVDLY 337
           M+    G  P++ T   +L  C+H   +  G +  H  V R++      ++   CL+D+Y
Sbjct: 505 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQ-IHAYVLRHHRYESSAYFVANCLIDMY 563

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDY 395
            + G ++ A  V ++ S    + W +++    +H     G  A+    ++  A     D 
Sbjct: 564 SKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGR---GSEALDIFDKMRKAGFVPDDI 620

Query: 396 VLLATIYACT 405
             L  +YAC+
Sbjct: 621 TFLVVLYACS 630



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 143/288 (49%), Gaps = 10/288 (3%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           YA L+  ++       WN LIR   +      AI     ML A  +RPD FT    LKAC
Sbjct: 107 YALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG-TRPDHFTLPHVLKAC 165

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER---DLV 156
             + +       HG +  +G+E  V +   L+  Y+  G +E A  +FD + +R   D++
Sbjct: 166 GELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 225

Query: 157 SWNSIISCYTQASFHLEALKLYERMRF------EDVGLDGFTLVCLLSSCAHVGALNMGI 210
           SWNSI+S + ++S    AL L+ +M         +   D  ++V +L +C  + A+    
Sbjct: 226 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 285

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H  A   G    V+VGNAL+D YAKCG +++A  VF+ M  +DV+SWN+M+ GY   G
Sbjct: 286 EVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 345

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
             + A   FK M       D +T+  ++ G S +G   E +  F  M+
Sbjct: 346 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMI 393



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 118/268 (44%), Gaps = 10/268 (3%)

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           + T ++  Y A G  + A  V + +     V WN +I  + +      A+ +  RM    
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
              D FTL  +L +C  + +   G   H + C  GF  +V++ NALV MY++CG+L+ A 
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 210

Query: 246 CVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQM-LMAGFHP-----DSITFLG 296
            +F  + +R   DV+SWNS++  +        A+  F +M L+    P     D I+ + 
Sbjct: 211 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 270

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
           +L  C     V +  E  H    R    P +     L+D Y + G +E A++V N     
Sbjct: 271 ILPACGSLKAVPQTKE-VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 329

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
           D V W  ++       N E      KN+
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAFELFKNM 357



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 4/150 (2%)

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F+    +G  +V  Y  CG  D A  V  R+     + WN +I  +   GR D AI+   
Sbjct: 85  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 144

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML AG  PD  T   +L  C        G   FH ++     +  +     LV +Y R 
Sbjct: 145 RMLRAGTRPDHFTLPHVLKACGELPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRC 203

Query: 341 GKLEKA---LEVINTSSPSDPVLWRTLLGS 367
           G LE+A    + I      D + W +++ +
Sbjct: 204 GSLEEASMIFDEITQRGIDDVISWNSIVSA 233


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 190/543 (34%), Positives = 302/543 (55%), Gaps = 20/543 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+N Y+  +   +   + +F  +      ++N++I  +AQS     A+     M  +
Sbjct: 143 GNALMNMYSKLLG--IDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTS 200

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            L +PD FT +  L        + K +E+HG+VIR G +  V + ++L+  YA +  IE 
Sbjct: 201 DL-KPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIED 259

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           +  VF ++  RD +SWNS+++ Y Q   + EAL+L+ +M    V         ++ +CAH
Sbjct: 260 SERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAH 319

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +  L++G  LH      GF  ++++ +ALVDMY+KCGN+ +A  +F RM   D +SW ++
Sbjct: 320 LATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAI 379

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I+G+ +HG G EA+S F++M   G  P+ + F+ +L  CSH GLV+E   YF+ M   Y 
Sbjct: 380 IMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYG 439

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINT--SSPSDPVLWRTLLGSCKIHRNVEIGEIA 380
           L   ++HY  + DL GRAGKLE+A + I+     P+  V W TLL SC +H+N+E+ E  
Sbjct: 440 LNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSV-WSTLLSSCSVHKNLELAEKV 498

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + +  +++ + G YVL+  +YA     + +A+ R  ++  G++  P  SWIE+ N+ H 
Sbjct: 499 AEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHG 558

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           FV  D+SHP  D I   L+ +M + +  GY  D S   V     E+   +    HSE+LA
Sbjct: 559 FVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTS--GVLHDVDEEHKRELLFGHSERLA 616

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           +AFG+  T  GT++R+ KN+R            S    R++IVRD  R+HHF  G CSCG
Sbjct: 617 VAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCG 676

Query: 549 DYW 551
           DYW
Sbjct: 677 DYW 679



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 187/366 (51%), Gaps = 13/366 (3%)

Query: 17  QAHEIHGEWLLN--------SYAISVSSSLSY---AQLLFNQIQNPQTQAWNSLIRAFAQ 65
           QA ++H +++          S  IS+ ++L     A L+F  +++P   AW S+IR F  
Sbjct: 23  QAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTD 82

Query: 66  SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV 125
                +A+  +  M  AS   PD   F   LK+C  +  L   + +HGF++R G +  + 
Sbjct: 83  QSLFSRALASFVEM-RASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
               LM  Y+    I++ R VF+ MP +D+VS+N++I+ Y Q+  + +AL++   M   D
Sbjct: 142 TGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSD 201

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           +  D FTL  +L   +    +  G  +H      G    VY+G++LVDMYAK   ++ + 
Sbjct: 202 LKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSE 261

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VFS + +RD +SWNS++ GY  +GR +EA+  F+QM+ A   P ++ F  ++  C+H  
Sbjct: 262 RVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLA 321

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +  G +  H  V R      I     LVD+Y + G ++ A ++ +  +  D V W  ++
Sbjct: 322 TLHLGKQ-LHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAII 380

Query: 366 GSCKIH 371
               +H
Sbjct: 381 MGHALH 386


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 196/529 (37%), Positives = 303/529 (57%), Gaps = 20/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ A+ +F++I      +W ++I  + +S    +A+  +  +L   L RPD+FT    L 
Sbjct: 153 LTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGL-RPDSFTLVRILY 211

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC RV  L   + + G++  SG    V V+T+L+  YA  G +E AR VFD M E+D+V 
Sbjct: 212 ACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVC 271

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W+++I  Y       EAL ++  M+ E+V  D + +V + S+C+ +GAL +G +   +  
Sbjct: 272 WSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMD 331

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
              F+ +  +G AL+D YAKCG++  A  VF  MR++D + +N++I G  + G    A  
Sbjct: 332 GDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFG 391

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM+  G  PD  TF+GLLCGC+H GLV++G  YF  M S +++ P I+HYGC+VDL 
Sbjct: 392 VFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQ 451

Query: 338 GRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            RAG L +A ++I +    ++ ++W  LLG C++H++ ++ E  +K L++LE  ++G YV
Sbjct: 452 ARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYV 511

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+ IY+ +   +   + R  +   G++  PG SW+E+   VH+F+V D SHP +  IY 
Sbjct: 512 LLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYE 571

Query: 457 KLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           KLE +    +  GY  T +  L  V     E FL      HSEKLA+AF L +T     +
Sbjct: 572 KLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFL----GCHSEKLAVAFALISTGAKDVI 627

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+VKNLR            S    R++IVRD  R+HHF +G CSC DYW
Sbjct: 628 RVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/331 (33%), Positives = 174/331 (52%), Gaps = 3/331 (0%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           ++  YA ++F Q  +P    +N+LIR    + +   A+  Y  M     + PD FTF F 
Sbjct: 49  AATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFA-PDNFTFPFV 107

Query: 96  LKACERVKA-LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           LKAC R+    +    LH  VI++G++  V V T L+  Y+ NG +  AR VFD +PE++
Sbjct: 108 LKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKN 167

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +VSW +II  Y ++    EAL L+  +    +  D FTLV +L +C+ VG L  G ++  
Sbjct: 168 VVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDG 227

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              E G V +V+V  +LVDMYAKCG+++ A  VF  M ++DV+ W+++I GY  +G   E
Sbjct: 228 YMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKE 287

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F +M      PD    +G+   CS  G +E G     +M     L   +     L+
Sbjct: 288 ALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTA-LI 346

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           D Y + G + +A EV       D V++  ++
Sbjct: 347 DFYAKCGSVAQAKEVFKGMRRKDCVVFNAVI 377


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 195/528 (36%), Positives = 292/528 (55%), Gaps = 16/528 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A+ +F+ +Q+    +W  L+  F QS   ++AI  ++ M       PD       +
Sbjct: 91  SLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEG-ELPDRVALLKFI 149

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            +C   KAL++ +E+H      G +  +V +  ++  Y   G I  A +VF  MPE++++
Sbjct: 150 DSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVI 209

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW+++I+ + Q     EAL  ++ M+ E + LD  T V +L +   VGAL +G  LH   
Sbjct: 210 SWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRI 269

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              G   S+ VGN LV+MY KCG+ D A  VF  M +++V+SWN+M+  YG +GR  EA+
Sbjct: 270 VYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREAL 329

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           + F  M + G  P+ ITF+ +L  CSH G  ++ V +F  M   + + P   H+GCL+D+
Sbjct: 330 ALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDM 389

Query: 337 YGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GR+GKLE+A E+I     P+D VLW +LL +C  H++ +    A +   Q E   A  Y
Sbjct: 390 LGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAY 449

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           ++L+ +YA  K  +  A+ RK ++  G++   G SWIEI  QVH+FV  D  HPD   I+
Sbjct: 450 IMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIF 509

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           + L+ +M   +  GY  D  +V  S    E   ++   YHSEKLA+AFG+A+TP  T L 
Sbjct: 510 KTLQRLMSEMRIKGYEPDRKVVIHSMEEEEK--DEVLFYHSEKLAVAFGIASTPPRTPLC 567

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           IVKNLR            S    R + VRD  R+HHF  G CSCGDYW
Sbjct: 568 IVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 176/356 (49%), Gaps = 10/356 (2%)

Query: 57  NSLIRAFAQSLSPL------QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQE 110
           +S+ RA  + LSP+       AI     +L  S +   T      ++ C   KAL + + 
Sbjct: 3   SSVRRAITKWLSPVLECGGVDAIREAVDLLEQSGAAGGTGDLEQLIRRCAGAKALEEGRR 62

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
           +H ++     +R   +S  L+  Y   G +  A+ VFD M  +++ SW  +++ + Q+  
Sbjct: 63  IHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGR 122

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
            +EA++L+ RM  E    D   L+  + SC    AL+ G  +H  A   G    +   NA
Sbjct: 123 GVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANA 182

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           +++MY KCG++  AF VF+RM +++V+SW++MI  +  +   DEA+ FFK M   G   D
Sbjct: 183 IINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELD 242

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
            IT++ +L   +  G +E G +  H+ +    L   I     LV++YG+ G  + A +V 
Sbjct: 243 RITYVSVLDAYTSVGALELG-KALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVF 301

Query: 351 NTSSPSDPVLWRTLLGS-CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           ++    + V W  +L +  +  R+ E   +A+ + + LE     D   +  +Y C+
Sbjct: 302 DSMVEKNVVSWNAMLAAYGQNGRSRE--ALALFDSMDLEGVRPNDITFVTILYCCS 355


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 201/521 (38%), Positives = 291/521 (55%), Gaps = 25/521 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF+   +    +WN++I  + +     +    +  M+   +   D  ++   + 
Sbjct: 51  LGAAKQLFSLCSDRDVVSWNAMIDGYVK-----RGEMGHTRMVFDRMVCRDVISWNTIIN 105

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
               V  +++ + L         ER +V   +++ G+   G +E A  +F  MP RD+VS
Sbjct: 106 GYAIVGKIDEAKRL----FDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVS 161

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNS+++CY Q     EAL L+++MR   V     T+V LLS+CAH+GAL+ G+ LH    
Sbjct: 162 WNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIN 221

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +     +  VG ALVDMYAKCG +  A  VF+ M  +DVL+WN++I G  +HG   EA  
Sbjct: 222 DNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQ 281

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            FK+M  A   P+ ITF+ +L  CSH G+V+EG +    M S Y ++P ++HY C++DL 
Sbjct: 282 LFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLL 341

Query: 338 GRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            RAG LE+A+E+I T     +P     LLG C+IH N E+GE+  K L+ L+   +G Y+
Sbjct: 342 ARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYI 401

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+ IYA  K  +   + R L+K NGI   PG S IE+   VH+FV  D SHP+++ IY 
Sbjct: 402 LLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYD 461

Query: 457 KLEEIMHRAK-FIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           KL EI  R K  IGY+ D   V +     E+  E + A HSEKLAIA+GL       ++R
Sbjct: 462 KLNEIHTRLKSAIGYSADTGNVLL--DMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIR 519

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           IVKNLR            S  Y R++IVRDR R+HHF DG 
Sbjct: 520 IVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGF 560



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 155/316 (49%), Gaps = 10/316 (3%)

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
            T+ F +KAC           +H  V++SG+E    +  +L+  YA    + AA+ +F  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
             +RD+VSWN++I  Y +         +++RM   DV     +   +++  A VG ++  
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDV----ISWNTIINGYAIVGKIDEA 116

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             L     E   V      N+++  + KCGN++ AF +FS M  RDV+SWNSM+  Y   
Sbjct: 117 KRLFDEMPERNLVS----WNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQC 172

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G+ +EA++ F QM   G  P   T + LL  C+H G +++G+ + H  ++   ++     
Sbjct: 173 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNSIV 231

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
              LVD+Y + GK+  A +V N     D + W T++    IH +V+  +   K + +  +
Sbjct: 232 GTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKE-AS 290

Query: 390 ASAGDYVLLATIYACT 405
               D   +A + AC+
Sbjct: 291 VEPNDITFVAMLSACS 306



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF---------------------- 63
           ++N YAI     +  A+ LF+++      +WNS++  F                      
Sbjct: 103 IINGYAIV--GKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVV 160

Query: 64  ---------AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
                    AQ   P +A+  ++ M    + +P   T    L AC  + AL+K   LH +
Sbjct: 161 SWNSMLACYAQCGKPNEALALFDQMRAVGV-KPTEATVVSLLSACAHLGALDKGLHLHTY 219

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           +  +  E   +V T L+  YA  G I  A  VF+ M  +D+++WN+II+         EA
Sbjct: 220 INDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEA 279

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIACEMGFVESVYVGNALVD 233
            +L++ M+   V  +  T V +LS+C+H G ++ G   L  ++   G    V   + ++D
Sbjct: 280 QQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVID 339

Query: 234 MYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHG 270
           + A+ G L+ A  +   M  + +  +  +++ G  +HG
Sbjct: 340 LLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHG 377


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 202/564 (35%), Positives = 306/564 (54%), Gaps = 57/564 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS---PLQAIFYYNHMLMASLSRPDTFTFTF 94
           + YA+L+F+++      +W+++IR+ +++      L+ I   N M +    RP       
Sbjct: 175 VEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQV----RPSEVAMVS 230

Query: 95  TLKACERVKALNKCQELHGFVIRSG----------------YERC--------------- 123
            +        +   + +H +VIR+                 Y +C               
Sbjct: 231 MVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQ 290

Query: 124 --VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
             VV  T ++ G   +  +E AR++FD+   RD++ W +++S Y QA+   +A  L+++M
Sbjct: 291 KTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM 350

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           R   V     T+V LLS CA  GAL++G ++H    +        +  ALVDMYAKCG++
Sbjct: 351 RTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDI 410

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           ++A  +F     RD+  WN++I G+ +HG G+EA+  F +M   G  P+ ITF+GLL  C
Sbjct: 411 NAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHAC 470

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--V 359
           SH GLV EG + F  MV  + L P I+HYGC+VDL GRAG L++A E+I  S P  P  +
Sbjct: 471 SHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIK-SMPIKPNTI 529

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
           +W  L+ +C++H+N ++GE+A   L+++E  + G  VL++ IYA        A  RK +K
Sbjct: 530 VWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMK 589

Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
           + G+K  PG S IE+   VH+F++ D+SHP    I   L E+  +    GY  D S V +
Sbjct: 590 TVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLL 649

Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
           +    E   E +  YHSEKLA+AFGL +T   T +RIVKNLR            S  Y R
Sbjct: 650 NIDEEEK--ETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGR 707

Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
            +IVRDR R+HHFR+G CSCGDYW
Sbjct: 708 VIIVRDRNRFHHFREGYCSCGDYW 731



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 175/412 (42%), Gaps = 44/412 (10%)

Query: 50  NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ 109
           +P  Q WN +I ++ +   P  A+  Y  +        D F     LKAC +V      +
Sbjct: 87  SPSAQ-WNFVITSYTKRNQPRNALNVYAQLRKMDFEV-DNFMAPSVLKACGQVSWTQLGK 144

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           E+HGFV++ G +R V V   LM  Y     +E AR VFD M ERD+VSW+++I   ++  
Sbjct: 145 EIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNK 204

Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE--SVYV 227
               AL+L   M F  V      +V +++  A    + MG  +H         E   V  
Sbjct: 205 EFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPT 264

Query: 228 GNALVDMYAKCGN-------------------------------LDSAFCVFSRMRKRDV 256
             AL+DMYAKCG+                               L+ A  +F   + RDV
Sbjct: 265 TTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDV 324

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           + W +M+  Y      D+A + F QM  +G  P  +T + LL  C+  G ++ G ++ H 
Sbjct: 325 MIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG-KWVHS 383

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEI 376
            + +  ++        LVD+Y + G +  A  +   +   D  +W  ++    +H     
Sbjct: 384 YIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMH---GY 440

Query: 377 GEIAMKNLVQLE--AASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGI 423
           GE A+    ++E       D   +  ++AC+      EG     K++ + G+
Sbjct: 441 GEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGL 492



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 134/309 (43%), Gaps = 22/309 (7%)

Query: 63  FAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
              SL PL  I    H   ++L   P       T  +   +  L + +++H  +I++ + 
Sbjct: 14  LTPSLLPL-TIQQLQHHPHSTLKFNPTPLQTPPTSPSQHDLSTLEQTKQIHAHIIKTHFH 72

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
             + +  N       +G+  +A+             WN +I+ YT+ +    AL +Y ++
Sbjct: 73  HALQIPLNDF----PSGLSPSAQ-------------WNFVITSYTKRNQPRNALNVYAQL 115

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           R  D  +D F    +L +C  V    +G  +H    + G    V+VGNAL+ MY +C  +
Sbjct: 116 RKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACV 175

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           + A  VF +M +RDV+SW++MI     +   D A+   ++M      P  +  + ++   
Sbjct: 176 EYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLF 235

Query: 302 SHQGLVEEGVEYFHMMVSR--YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
           +    +  G +  H  V R   N   G+     L+D+Y + G L  A ++ N  +    V
Sbjct: 236 ADTANMRMG-KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVV 294

Query: 360 LWRTLLGSC 368
            W  ++  C
Sbjct: 295 SWTAMIAGC 303



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 3/237 (1%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S+ L  A+ LF+  QN     W +++ A+AQ+    QA   ++ M  + + RP   T   
Sbjct: 306 SNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGV-RPTKVTIVS 364

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L  C    AL+  + +H ++ +   E   +++T L+  YA  G I AA  +F     RD
Sbjct: 365 LLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRD 424

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL-H 213
           +  WN+II+ +    +  EAL ++  M  + V  +  T + LL +C+H G +  G  L  
Sbjct: 425 ICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFE 484

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVH 269
           ++    G V  +     +VD+  + G LD A  +   M  K + + W +++    +H
Sbjct: 485 KMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 541


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 293/528 (55%), Gaps = 18/528 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F+++       WN+++    Q       +F +  M       PD FT    L+
Sbjct: 39  LDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGF-LPDEFTLGSVLR 97

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C  ++A    +++H +V++ GYE  +VV ++L   Y  +G +     V   M  R++V+
Sbjct: 98  GCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVA 157

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++I+   Q       L LY  M+   +  D  TLV ++SS A +  L  G  +H  A 
Sbjct: 158 WNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAI 217

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G   +V V ++L+ MY+KCG L+ +          D + W+SMI  YG HGRG+EA+ 
Sbjct: 218 KAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVH 277

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+QM   G   + +TFL LL  CSH GL E+G+ +F +MV +Y LKP ++HY C+VDL 
Sbjct: 278 LFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLL 337

Query: 338 GRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GR+G L++A E +  S P  +D V+W+TLL +C+IHRN ++     + +++L    +  Y
Sbjct: 338 GRSGCLDEA-EAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATY 396

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ I+A  K  + V++ R  ++   +K  PG SW+E+ N+V +F + DKSHP ++ I 
Sbjct: 397 VLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEID 456

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
             L+E+M   K  GY  D + V     S E   E S   HSEKLAIAFGL   P G+ +R
Sbjct: 457 LYLKELMEEMKLRGYVPDTATVFHDTDSEEK--ENSLVNHSEKLAIAFGLMNIPPGSPIR 514

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++KNLR            S   +R++IVRD  R+HHF+ G CSCGDYW
Sbjct: 515 VMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 151/308 (49%), Gaps = 9/308 (2%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           R ++    L+ G+  +G +++A  VFD M ER++ +WN+++S   Q  F+   L L+  M
Sbjct: 21  RNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREM 80

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
                  D FTL  +L  CA + A   G  +H    + G+  ++ VG++L  MY K G+L
Sbjct: 81  HELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSL 140

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
                V   MR R+V++WN++I G   +G  +  +  +  M M+G  PD IT + ++   
Sbjct: 141 GEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSS 200

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
           +    + +G +  H    +      +     L+ +Y + G LE +++ +      D VLW
Sbjct: 201 AELATLFQG-QQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLW 259

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG--DYVLLATIYACTKD---EEGVARTRK 416
            +++ +   H     GE A+    Q+E    G  D   L+ +YAC+ +   E+G+   + 
Sbjct: 260 SSMIAAYGFHGR---GEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKL 316

Query: 417 LIKSNGIK 424
           +++  G+K
Sbjct: 317 MVEKYGLK 324



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 125/266 (46%), Gaps = 6/266 (2%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S SL   + +   ++     AWN+LI   AQ+      +  YN M M+ L RPD  T   
Sbjct: 137 SGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGL-RPDKITLVS 195

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            + +   +  L + Q++H   I++G    V V ++L+  Y+  G +E +     +    D
Sbjct: 196 VISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPD 255

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            V W+S+I+ Y       EA+ L+E+M  E +G +  T + LL +C+H G    G+   +
Sbjct: 256 SVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFK 315

Query: 215 IACEM-GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRG 272
           +  E  G    +     +VD+  + G LD A  +   M  + DV+ W +++    +H   
Sbjct: 316 LMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNA 375

Query: 273 DEAISFFKQMLMAGFHP-DSITFLGL 297
           D A    +++L    +P DS T++ L
Sbjct: 376 DMATRTAEEILR--LNPQDSATYVLL 399



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 78/199 (39%), Gaps = 33/199 (16%)

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML---------- 283
           MY K G +  A   F+ M  R+++S N +I G+  HG  D AI  F +ML          
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 284 ---------------------MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
                                  GF PD  T   +L GC+       G +  H  V +Y 
Sbjct: 61  VSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQ-VHAYVLKYG 119

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
            +  +     L  +Y ++G L +  +VI      + V W TL+     + + E G + + 
Sbjct: 120 YEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFE-GVLDLY 178

Query: 383 NLVQLEAASAGDYVLLATI 401
           N++++         L++ I
Sbjct: 179 NMMKMSGLRPDKITLVSVI 197


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 200/533 (37%), Positives = 301/533 (56%), Gaps = 22/533 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTL 96
           L  A+  F ++Q   +  WN+++  +       +A+  +  M   S S RPD F+F+  +
Sbjct: 82  LDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDKFSFSIAI 141

Query: 97  KACERVKALNKCQELHGFVIRSGYE--RCVVVSTNLMRGYAANGVIEAARSVFDNMP-ER 153
           +AC  ++ L + +E+H  + R G E  + VVV T L+  Y+  G +E AR VFD++  + 
Sbjct: 142 EACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDA 201

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           D V WN++I+ Y Q     +AL LY  M    D+     T V ++  CA + AL  G  +
Sbjct: 202 DSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAI 261

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H       F  ++ V NALV MY KCG LD A  VF  M+ +D +SWN++I  Y  HG  
Sbjct: 262 HARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHS 321

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           D+A+  +++M + G  P  +TF+GLL  CSH GLV +G++YF+ M   + +KP + H+GC
Sbjct: 322 DQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGC 381

Query: 333 LVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           ++DL GR G+L +A E++  S P  ++ V W +LLG+CK H +++ G  A   +V     
Sbjct: 382 IIDLLGRGGRLAEA-ELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPW 440

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           ++G YVLL+ IYA     + V + RK++ + G+K +PG SWIEIG+ VH+FV  D+SHP 
Sbjct: 441 TSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQ 500

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
            + IY +L +++   K +GY  D S  +V     E+  E     HSEKLAI +G    P 
Sbjct: 501 GEEIYVELGKMVEEMKGLGYVPDTS--SVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPG 558

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + LRIVKNLR            S    R ++VRD  R+H F +G CSC DYW
Sbjct: 559 KSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 611



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 175/352 (49%), Gaps = 11/352 (3%)

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA--LNKCQELHGFVIRSG 119
           AF+ +    +A+ ++  M  +   RPD  TF+  L A  ++ A  +++ +E+H +   SG
Sbjct: 3   AFSHNGCHSEALVFFRRMYQSG-ERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISG 61

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
               VVV T ++  Y   G ++ AR+ F+ +  ++ V+WN++++ Y       EAL+L+ 
Sbjct: 62  LLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFR 121

Query: 180 RM--RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG--FVESVYVGNALVDMY 235
            M  R      D F+    + +C+++  L  G  +H +    G    + V VG AL++MY
Sbjct: 122 EMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMY 181

Query: 236 AKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSIT 293
           +KCG+L+ A  VF  +R   D + WN+MI  Y  HGRG +A+  ++ M       P   T
Sbjct: 182 SKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGT 241

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F+ ++  C+    +++G    H  V   N    +     LV +YG+ G L++AL+V ++ 
Sbjct: 242 FVTVIDVCAELSALKQG-RAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSM 300

Query: 354 SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
              D + W T++ S   H + +   +  + +  L+     +   +  + AC+
Sbjct: 301 KLKDEISWNTIISSYAYHGHSDQALLLYQEM-DLQGVKPTEVTFVGLLSACS 351



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 8/217 (3%)

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLD--GFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++ ++    H EAL  + RM       D   F+++    +     A++ G  +HR A   
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G + +V VG A++ MY KCG LD A   F  ++ ++ ++WN+M+  Y + GR  EA+  F
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 280 KQML--MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR--YNLKPGIKHYGCLVD 335
           ++M        PD  +F   +  CS+   +E+G E  H M+ R    L   +     L++
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGRE-IHEMLRREGKELHKDVVVGTALLN 179

Query: 336 LYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIH 371
           +Y + G LE+A +V ++    +D V W  ++ +   H
Sbjct: 180 MYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQH 216


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 201/542 (37%), Positives = 304/542 (56%), Gaps = 24/542 (4%)

Query: 26  LLNSYAISVS-SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSP-LQAIFYYNHMLMAS 83
           L++ YA S +  SL  A+ +FN++      AW +L+  + Q  S   Q +  +  ML   
Sbjct: 296 LVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEG 355

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
           + RP+  T++  LKAC  +   +  +++H   ++S      VV   L+  YA +G IE A
Sbjct: 356 I-RPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEA 414

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           R  FD + E+++VS++  +    +++ + +    Y+  R E +G+  FT   L+S+ A V
Sbjct: 415 RHAFDQLYEKNMVSFSGNLDGDGRSNTYQD----YQIERME-LGISTFTFGSLISAAASV 469

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           G L  G  LH ++ + GF     +GN+LV MY++CG L  A  VF  M   +V+SW SMI
Sbjct: 470 GMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMI 529

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            G   HG    A+  F  M+ AG  P+ +T++ +L  CSH GLV+EG E+F MM   + L
Sbjct: 530 SGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGL 589

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
            P ++HY C+VDL GR+G +E AL+ IN      D ++W+TLLG+CK H N++IGEIA  
Sbjct: 590 IPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAAN 649

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
           +++QLE      YVLL+ +YA     + VAR R L++   +    G SW+ + N +H+F 
Sbjct: 650 HVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFR 709

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             D SHP A+ IY KLE ++   K +GY  D S+V      S++  E     HSEK+A+A
Sbjct: 710 AGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVL--HDMSDELKELCLLQHSEKIAVA 767

Query: 503 FGLATTPDGTS-LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           FGL +    T  +RI KNLR            S A  R++I+RD  R+H  +DG CSCG+
Sbjct: 768 FGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGE 827

Query: 550 YW 551
           YW
Sbjct: 828 YW 829



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 171/354 (48%), Gaps = 19/354 (5%)

Query: 10  VGLNKARQAHEIHGEWLLNSYAI---------SVSSSLSYAQLLFN--QIQNPQTQAWNS 58
           + L +A Q H +    LL + A+         S  S+++ A+ +F+   +      +W +
Sbjct: 63  IHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTA 122

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ-ELHGFVIR 117
           +    +++ +  +A+  +   L   L  P+ FT     +AC   +  +     + G V +
Sbjct: 123 MASCLSRNGAEAEALRLFGETLEEGL-LPNAFTLCAATQACFASELFHLAGGAVLGLVFK 181

Query: 118 SGYERC-VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
            G+    V V   L+  +A NG + A R VFD + ER +V W  +I+ Y Q+ +  EA++
Sbjct: 182 LGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVE 241

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           L+  M       D +TL  +LS+C  +G+  +G  LH +A  +G      V   LVDMYA
Sbjct: 242 LFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYA 301

Query: 237 KCGN---LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD-EAISFFKQMLMAGFHPDSI 292
           K  N   L +A  VF+RM K +V++W +++ GY   G  D + +  F +ML  G  P+ I
Sbjct: 302 KSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHI 361

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
           T+  +L  C++ G  + G +  H    + NL         LV +Y  +G +E+A
Sbjct: 362 TYSSMLKACANLGDQDSGRQ-IHTHCVKSNLADLNVVGNALVSMYAESGSIEEA 414



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/269 (33%), Positives = 131/269 (48%), Gaps = 20/269 (7%)

Query: 111 LHGFVIRSG--YERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYT 166
           L G ++R+G   E   VV+ +L+  Y+    + AARSVFD MP   RDLVSW ++ SC +
Sbjct: 69  LQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLS 128

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTL-----VCLLSSCAHV-GALNMGIFLHRIACEMG 220
           +     EAL+L+     E +  + FTL      C  S   H+ G   +G+       ++G
Sbjct: 129 RNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVF-----KLG 183

Query: 221 FVES-VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           F  + V VG AL+DM+AK G+L +   VF  + +R V+ W  +I  Y   G  DEA+  F
Sbjct: 184 FWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELF 243

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
             ML  GF PD  T   +L  C+  G    G +  H +  R  L+        LVD+Y +
Sbjct: 244 LDMLENGFQPDQYTLSSMLSACTELGSFRLG-QQLHSLALRLGLESDSCVSCGLVDMYAK 302

Query: 340 A---GKLEKALEVINTSSPSDPVLWRTLL 365
           +     L  A EV N     + + W  LL
Sbjct: 303 SHNGQSLHNAREVFNRMPKHNVMAWTALL 331


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 196/580 (33%), Positives = 322/580 (55%), Gaps = 48/580 (8%)

Query: 14  KARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAI 73
           K  Q   I G  +++ YA      +  A+ +F++++     +W+++I A+       +A+
Sbjct: 288 KKFQLDVILGTAMIDMYA--KCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKAL 345

Query: 74  FYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRG 133
             +  M+++S   PD  T    L AC   + L + +++H      G  + ++V+  L+  
Sbjct: 346 DLFR-MMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHF 404

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL--------------------- 172
           Y+    ++ A  +FD M  RD VSW+ ++  + +   ++                     
Sbjct: 405 YSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTL 464

Query: 173 -------EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV 225
                  E+L L+++MR E V  D   +V ++ +CA +GA++    +        F   V
Sbjct: 465 PFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDV 524

Query: 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
            +G A++DM+AKCG ++SA  +F RM +++V+SW++MI  YG HG+G +A+  F  ML +
Sbjct: 525 ILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRS 584

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
           G  P+ IT + LL  CSH GLVEEG+ +F +M   Y+++  +KHY C+VDL GRAG+L++
Sbjct: 585 GILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDE 644

Query: 346 ALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
           AL++I + +   D  LW   LG+C+ H++V + E A  +L++L+  + G Y+LL+ IYA 
Sbjct: 645 ALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYAN 704

Query: 405 TKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHR 464
               E VA+TR L+    +K  PGW+WIE+ N+ H+F V D +HP +  IY  L+ + ++
Sbjct: 705 AGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNK 764

Query: 465 AKFIGYTKDESLVAVSGSSSEDFLEKSSAY-HSEKLAIAFGLATTPDGTSLRIVKNLR-- 521
            + +GY  D + V       ++ L+    Y HSEKLAIAFGL  TP+ T +RI+KNLR  
Sbjct: 765 LELVGYVPDTNFVL---HDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVC 821

Query: 522 ----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                     S    R +IVRD  R+HHF++G CSCGDYW
Sbjct: 822 GDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 173/367 (47%), Gaps = 38/367 (10%)

Query: 12  LNKARQAH---EIHGEWLLNS--------YAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           L + RQ H    +HG  +L +        Y  S   +L  A  LF+ +    + +W+ ++
Sbjct: 94  LTQVRQVHAQASVHG--MLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMV 151

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             FA+    +     +  ++    +RPD +T  F ++AC  +K L               
Sbjct: 152 GGFAKVGDYINCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQ-------------- 196

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
                    L+  Y     IE AR +FD M ERDLV+W  +I  Y +     E+L L+E+
Sbjct: 197 -------MALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEK 249

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           MR E V  D   +V ++ +CA +GA++    +        F   V +G A++DMYAKCG 
Sbjct: 250 MREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGC 309

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           ++SA  +F RM +++V+SW++MI  YG HG+G +A+  F+ ML +G  PD IT   LL  
Sbjct: 310 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYA 369

Query: 301 CSH-QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
           C + + L +  V   H   S + +   +     LV  Y     L+ A  + +     D V
Sbjct: 370 CINCRNLTQ--VRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSV 427

Query: 360 LWRTLLG 366
            W  ++G
Sbjct: 428 SWSVMVG 434



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 162/360 (45%), Gaps = 32/360 (8%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+++Q      W  +I  +A+     +++  +  M    +  PD       + AC 
Sbjct: 212 ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV-PDKVAMVTVVFACA 270

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++ A++K + +  ++ R  ++  V++ T ++  YA  G +E+AR +FD M E++++SW++
Sbjct: 271 KLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSA 330

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+ Y       +AL L+  M    +  D  TL  LL +C +   L     +H  A   G
Sbjct: 331 MIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHG 390

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            ++++ V N LV  Y+    LD A+ +F  M  RD +SW+ M+ G+   G        F+
Sbjct: 391 MLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFR 450

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLV------EEGV----------------------- 311
           +++  G  PD+ T     CG +++ LV      EEGV                       
Sbjct: 451 ELIRCGARPDNYTL--PFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA 508

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
                 + R   +  +     ++D++ + G +E A E+ +     + + W  ++ +   H
Sbjct: 509 RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 568



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 139/313 (44%), Gaps = 27/313 (8%)

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
           F + A    + L + +++H      G    +VV+  L+  Y+    ++ A  +FD M  R
Sbjct: 83  FYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVR 142

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           D VSW+ ++  + +   ++     +  +       D +TL  ++ +C  +  L M     
Sbjct: 143 DSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM----- 197

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
                           ALVDMY KC  ++ A  +F +M++RD+++W  MI GY   G+ +
Sbjct: 198 ----------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKAN 241

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           E++  F++M   G  PD +  + ++  C+  G + +        + R   +  +     +
Sbjct: 242 ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA-RIIDDYIQRKKFQLDVILGTAM 300

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL-VQLEAASA 392
           +D+Y + G +E A E+ +     + + W  ++ +   H     G  A+    + L +   
Sbjct: 301 IDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ---GRKALDLFRMMLSSGML 357

Query: 393 GDYVLLAT-IYAC 404
            D + LA+ +YAC
Sbjct: 358 PDKITLASLLYAC 370


>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
 gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
          Length = 596

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 211/571 (36%), Positives = 315/571 (55%), Gaps = 32/571 (5%)

Query: 6   HARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
           HAR   L        +   +L     +  + +L +A LL   +  P T  +N+ +R  A 
Sbjct: 33  HARLHALGTLHSYPSLRARFLDRLALLPHADALPHALLLLRSLPYPATNDFNAALRGLAA 92

Query: 66  SLSPLQAIFYYNHMLMASLSRP----DTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
           S  P +++      L+ + + P    D  + +F LKA  R        +LH  ++R G  
Sbjct: 93  SPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSDAFATLQLHAILVRLGVA 152

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
             V + T L+  YA  G + +AR VFD M  RD+ +WN++++   Q +    AL L+ R+
Sbjct: 153 ADVRLMTTLLDSYAKCGDLASARRVFDEMSVRDVATWNALLAGLAQGTEPNLALVLFRRL 212

Query: 182 --RFEDVGL----DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
              F ++      +  T+V  LS+CA +GAL  G+  H  A  +G V +V V NAL+DMY
Sbjct: 213 AGSFRELPPREEPNEVTVVAALSACAQLGALKDGLAAHDFARTIGAVGNVRVCNALIDMY 272

Query: 236 AKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           +KCG+L  A  VF   ++  R ++S+N+ I    +HG G++A+  F +M  A   PD +T
Sbjct: 273 SKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGHGEDALKLFDEM-PARIEPDEVT 331

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NT 352
           +L +L GC+H GLV++G   F  M     + P +KHYG +VDL GRAG+L +A ++I + 
Sbjct: 332 YLAVLGGCNHAGLVDDGRRVFDSM----RVPPNMKHYGTIVDLLGRAGRLAEAHDMIMHM 387

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
             P+D VLW+TLLG+ K+H NV++ E+A   L  L +   GDYVLL+ +YA       V 
Sbjct: 388 PFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVG 447

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           R R  ++SN +K  PG+S+ EI   +HKF+  DK H     IYR L+EI  +   +GY  
Sbjct: 448 RVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHLRWREIYRALDEIGSKICELGYEP 507

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           + S   V     E+  + + +YHSEKLAIAFGL +TP G ++R++KNLR           
Sbjct: 508 ETS--NVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRICGDCHVVAKL 565

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S AY R +I+RDR R+H F DG CSC DYW
Sbjct: 566 ISKAYGRVIIIRDRARFHQFEDGQCSCRDYW 596


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 201/531 (37%), Positives = 296/531 (55%), Gaps = 18/531 (3%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  +  A  +F ++       W+ +I  +AQS    +AI  +  M    L  P+ FT   
Sbjct: 294 SGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRM-RRGLVLPNQFTLAS 352

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L+AC  +  L    ++H  V++ G +  V VS  LM  YA  G +E +  +F   P   
Sbjct: 353 LLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCT 412

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            VSWN++I  Y QA    +AL L++ M    V     T   +L +CA + AL  G  +H 
Sbjct: 413 DVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHS 472

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
           ++ +  + ++  VGNAL+DMYAKCGN+  A  VF  +R+ D +SWN+MI GY VHG   E
Sbjct: 473 LSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGE 532

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F+ ML     PD +TF+G+L  CS+ GL++ G  YF  MV  Y+++P  +HY C+V
Sbjct: 533 ALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMV 592

Query: 335 DLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
            L GR+G L+KA ++++   P +P  ++WR LL +C IH +VE+G I+ + ++++E    
Sbjct: 593 WLLGRSGHLDKAAKLVH-EIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDE 651

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
             +VLL+ IYA  +    VA  R  +K  GI+  PG SWIE   +VH F V D SHPD  
Sbjct: 652 ATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTK 711

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
           +I   LE +  +A+  GY  D S V +     +   E+    HSE+LA+A+GL  TP  +
Sbjct: 712 LINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDK--EQRLWVHSERLALAYGLIRTPSIS 769

Query: 513 SLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            LRI+KNLR  A              RD+I+RD  R+HHF +G+CSCGDYW
Sbjct: 770 PLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 179/349 (51%), Gaps = 4/349 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ Y  SV      A+ +F+ I+     +W  ++  + ++    +++  ++ M + 
Sbjct: 183 GTALIDCY--SVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIV 240

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
              +P+ FTF   LKAC  ++  N  + +HG   ++ Y   + V   L+  Y  +G ++ 
Sbjct: 241 GF-KPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDD 299

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VF+ MP+ D++ W+ +I+ Y Q+    EA++++ RMR   V  + FTL  LL +CA 
Sbjct: 300 ALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACAS 359

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +  L +G  +H    ++G   +V+V NAL+DMYAKCG ++++  +FS       +SWN++
Sbjct: 360 LVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTV 419

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           IVGY   G G++A+  FK ML        +T+  +L  C+    +E G +   + V    
Sbjct: 420 IVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIY 479

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            K  +     L+D+Y + G ++ A  V +     D V W  ++    +H
Sbjct: 480 DKNTVVG-NALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVH 527



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 194/418 (46%), Gaps = 27/418 (6%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LLN Y      SL  A  LF+++ +  T ++ +LI+ ++Q L   +AI  ++  L     
Sbjct: 85  LLNFYV--KYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSR-LQGEGH 141

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
             + F F+  LK     +       +H  V + G++    V T L+  Y+  G  E AR 
Sbjct: 142 ELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQ 201

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD +  +D+VSW  +++CY +     E+LKL+ RMR      + FT   +L +C  +  
Sbjct: 202 VFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEV 261

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
            N+G  +H  A +  ++E ++VG  L+D+Y K G++D A  VF  M K DV+ W+ MI  
Sbjct: 262 FNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIAR 321

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y    + +EAI  F +M      P+  T   LL  C+    ++ G +  H  V +  L  
Sbjct: 322 YAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQ-IHCHVVKVGLDM 380

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
            +     L+D+Y + G++E +L++ + S     V W T++       N E   I  K++ 
Sbjct: 381 NVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDM- 439

Query: 386 QLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
            LE    G  V  +++                     ++   G + +E G+Q+H   V
Sbjct: 440 -LECQVQGTEVTYSSV---------------------LRACAGIAALEPGSQIHSLSV 475



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 135/294 (45%), Gaps = 31/294 (10%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           +T+ +   L++C R       + LH  +I+ G    +  +  L+  Y     +  A  +F
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D MP+R+ VS+ ++I  Y+Q     EA+ L+ R++ E   L+ F    +L          
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAK 162

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           +G  +H    ++GF    +VG AL+D Y+ CG  + A  VF  +  +D++SW  M+  Y 
Sbjct: 163 LGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYV 222

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +   +E++  F +M + GF P++ TF  +L  C        G+E F++         G 
Sbjct: 223 ENECFEESLKLFSRMRIVGFKPNNFTFASVLKACV-------GLEVFNV---------GK 266

Query: 328 KHYGC---------------LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
             +GC               L+DLY ++G ++ AL+V       D + W  ++ 
Sbjct: 267 AVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIA 320


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 202/565 (35%), Positives = 309/565 (54%), Gaps = 85/565 (15%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           + +SS SYA+L+F  +   +   WN+ +R+FA+  SP  AI  +  +    +S PD +T 
Sbjct: 58  AFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDIS-PDHYTC 116

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
           +F LKAC R+  +   + +HG+V + G +  + +   ++  YA  G I  AR VFD MP+
Sbjct: 117 SFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQ 176

Query: 153 RDLVSWN-------------------------------SIISCYTQASFHLEALKLYERM 181
           RD+++WN                               S+I  Y Q     EA+ L+  M
Sbjct: 177 RDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEM 236

Query: 182 RFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
             ED GL  +  T+V +L +CA +G L +G  +H  +   G+ +++ V N L+DMY KCG
Sbjct: 237 --EDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCG 294

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            L+ A  +F  M +R V+SW++MI G   HGR ++A++ F +M+  G  P+++TF+G+L 
Sbjct: 295 CLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILH 354

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE-VINTSSPSDP 358
            CSH G+VE+G +YF  M   Y + P I+HYGC+VDL+ RAG L++A E ++N     + 
Sbjct: 355 ACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNG 414

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
           V+W  LLG CK+H+NV++ E A ++L +L+  + G YV+L+ IYA     E VAR RKL+
Sbjct: 415 VVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLM 474

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
           +  G       +W                           E+++ R K  GY  + S+V 
Sbjct: 475 RDRG-------TW---------------------------EKLLQRMKLKGYVPNTSVVL 500

Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
           +     ED  EK    HSEKLA+ FGL  T  GT +RI+KNLR            S+  +
Sbjct: 501 L--DMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVST 558

Query: 527 RDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+++VRDR R+H F++G CSCGDYW
Sbjct: 559 REIVVRDRNRFHCFKNGSCSCGDYW 583



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 147/356 (41%), Gaps = 50/356 (14%)

Query: 86  RPDT-----FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
           RP T     FT  F LK            +LH  ++++      +  + +    A N   
Sbjct: 16  RPSTHLLHNFTSPFELK------------QLHAHLLKTNSPLSSLPLSRVASVCAFNSSF 63

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
             A+ +F  +   ++  WN+ +  + +     +A+ L+ R+R  D+  D +T   +L +C
Sbjct: 64  SYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKAC 123

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
           + +  +  G  +H    ++G   ++++ N +V +YA CG +  A  VF +M +RDV++WN
Sbjct: 124 SRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWN 183

Query: 261 -------------------------------SMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
                                          SMI GY   G+  EAI  F +M  AG  P
Sbjct: 184 IMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLP 243

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           + +T + +L  C+  G +  G    H   +R   +  I+    L+D+Y + G LE A  +
Sbjct: 244 NEVTVVAVLVACADMGNLVLG-RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRI 302

Query: 350 INTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
            +       V W  ++     H   E   +A+ N +            +  ++AC+
Sbjct: 303 FDNMEERTVVSWSAMIAGLAAHGRAE-DALALFNKMINTGVKPNAVTFIGILHACS 357


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 188/529 (35%), Positives = 299/529 (56%), Gaps = 20/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +  +++     +W ++I  + Q     +A+  +  M    + R D   F+  + 
Sbjct: 466 LDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGI-RSDNIGFSSAIS 524

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  ++ALN+ Q++H     SGY   + +   L+  YA  G  + A   F+ +  +D +S
Sbjct: 525 ACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNIS 584

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++IS + Q+    EAL+++ +M    V  + FT    +S+ A+   +  G  +H +  
Sbjct: 585 WNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMI 644

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G+       N L+ +Y+KCG+++ A   F  M +++V+SWN+MI GY  HG G EA+S
Sbjct: 645 KTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVS 704

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++M   G  P+ +TF+G+L  CSH GLV EG+ YF  M   + L P  +HY C+VDL 
Sbjct: 705 LFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLL 764

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GRA  L  A E I    P +P  ++WRTLL +C +H+N+EIGE A ++L++LE   +  Y
Sbjct: 765 GRAALLCCAREFIE-EMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATY 823

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ +YA +   +   RTR+++K  G+K  PG SWIE+ N +H F V D+ HP A+ IY
Sbjct: 824 VLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIY 883

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY-HSEKLAIAFGLATTPDGTSL 514
             ++++  RA  IGY +D   +    +  E   +  +AY HSEKLA+AFGL +  +   +
Sbjct: 884 EYIDDLNERAGEIGYVQDRYNLL---NDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPI 940

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++KNLR            S   +R ++VRD  R+HHF  G+CSC DYW
Sbjct: 941 RVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 183/375 (48%), Gaps = 6/375 (1%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WN ++ A+ Q  +  ++ + +  M +  L  P+ +T+   L+ C  + AL+  +++H  V
Sbjct: 383 WNVMLVAYGQLGNLSESYWIFLQMQIEGL-MPNQYTYPSILRTCTSLGALDLGEQIHTQV 441

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
           I+SG++  V V + L+  YA +G ++ AR +   + E D+VSW ++I+ YTQ     EAL
Sbjct: 442 IKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEAL 501

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           KL++ M  + +  D       +S+CA + ALN G  +H  +   G+ E + +GNALV +Y
Sbjct: 502 KLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLY 561

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           A+CG    A+  F ++  +D +SWN++I G+   G  +EA+  F QM  AG   +  TF 
Sbjct: 562 ARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFG 621

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
             +   ++   +++G +  H M+ +       +    L+ LY + G +E A         
Sbjct: 622 SAVSATANTANIKQGKQ-IHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPE 680

Query: 356 SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK---DEEGVA 412
            + V W  ++     H          + + QL          +  + AC+      EG++
Sbjct: 681 KNVVSWNAMITGYSQHGYGSEAVSLFEEMKQL-GLMPNHVTFVGVLSACSHVGLVNEGLS 739

Query: 413 RTRKLIKSNGIKTTP 427
             R + K +G+   P
Sbjct: 740 YFRSMSKEHGLVPKP 754



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 168/331 (50%), Gaps = 2/331 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+L+F ++    + +W ++I   +Q+    +AI  +  M  +++  P  + F+  L AC 
Sbjct: 166 AKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVI-PTPYVFSSVLSACT 224

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +++     ++LHGF+++ G      V   L+  Y+  G + AA  +F  M  RD +S+NS
Sbjct: 225 KIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNS 284

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS   Q  F   AL+L+E+M+ + +  D  T+  LLS+CA VGA   G  LH    +MG
Sbjct: 285 LISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMG 344

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               + +  +L+D+Y KC ++++A   F      +V+ WN M+V YG  G   E+   F 
Sbjct: 345 MSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFL 404

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QM + G  P+  T+  +L  C+  G ++ G E  H  V +   +  +     L+D+Y + 
Sbjct: 405 QMQIEGLMPNQYTYPSILRTCTSLGALDLG-EQIHTQVIKSGFQFNVYVCSVLIDMYAKH 463

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           G+L+ A  ++      D V W  ++     H
Sbjct: 464 GELDTARGILQRLREEDVVSWTAMIAGYTQH 494



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 160/323 (49%), Gaps = 3/323 (0%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LF+ I +     WN +I          Q +  ++ M+  +++ PD  TF   L+AC   K
Sbjct: 67  LFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVT-PDESTFASVLRACSGGK 125

Query: 104 A-LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
           A     +++H  +I  G+    +V   L+  Y+ NG ++ A+ VF+ +  +D VSW ++I
Sbjct: 126 APFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMI 185

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           S  +Q     EA+ L+ +M    V    +    +LS+C  +    +G  LH    + G  
Sbjct: 186 SGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLS 245

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
              +V NALV +Y++ GNL +A  +FS+M +RD +S+NS+I G    G  D A+  F++M
Sbjct: 246 SETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKM 305

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
            +    PD +T   LL  C+  G   +G +  H  V +  +   +   G L+DLY +   
Sbjct: 306 QLDCMKPDCVTVASLLSACASVGAGYKGKQ-LHSYVIKMGMSSDLIIEGSLLDLYVKCFD 364

Query: 343 LEKALEVINTSSPSDPVLWRTLL 365
           +E A E   T+   + VLW  +L
Sbjct: 365 IETAHEYFLTTETENVVLWNVML 387



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 164/330 (49%), Gaps = 4/330 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L  A+ +F+++      ++NSLI   AQ     +A+  +  M +  + +PD  T    L
Sbjct: 263 NLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCM-KPDCVTVASLL 321

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  V A  K ++LH +VI+ G    +++  +L+  Y     IE A   F      ++V
Sbjct: 322 SACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVV 381

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            WN ++  Y Q     E+  ++ +M+ E +  + +T   +L +C  +GAL++G  +H   
Sbjct: 382 LWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQV 441

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF  +VYV + L+DMYAK G LD+A  +  R+R+ DV+SW +MI GY  H    EA+
Sbjct: 442 IKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEAL 501

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKPGIKHYGCLVD 335
             F++M   G   D+I F   +  C+    + +G + +    +S Y+    I +   LV 
Sbjct: 502 KLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGN--ALVS 559

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           LY R G+ + A          D + W  L+
Sbjct: 560 LYARCGRAQDAYLAFEKIDAKDNISWNALI 589



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 136/281 (48%), Gaps = 2/281 (0%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           R +  T+ +  + C    +L   ++LH  + +SG++   V+ + L+  Y A+G ++ A  
Sbjct: 7   RANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIK 66

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD++P  ++  WN +IS         + L L+  M  E+V  D  T   +L +C+   A
Sbjct: 67  LFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKA 126

Query: 206 -LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
              +   +H      GF  S  V N L+D+Y+K G++D A  VF R+  +D +SW +MI 
Sbjct: 127 PFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMIS 186

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           G   +GR DEAI  F QM  +   P    F  +L  C+   L + G E  H  + ++ L 
Sbjct: 187 GLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLG-EQLHGFIVKWGLS 245

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                   LV LY R G L  A ++ +     D + + +L+
Sbjct: 246 SETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLI 286


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 199/560 (35%), Positives = 306/560 (54%), Gaps = 50/560 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ L  Q       +W SLI  ++++  P  A++ +N ML   ++ PD       L 
Sbjct: 187 LDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVA-PDEVAVIGALS 245

Query: 98  ACERVK------------ALNKCQELHGFVIR--SGYERCVVVS---------------- 127
           AC ++K               + +     V+     Y +C  ++                
Sbjct: 246 ACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPE 305

Query: 128 --TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
               ++ GY   G ++ ARS+FD M  RD++++NS+I+ Y  +    +AL+L+ +MR   
Sbjct: 306 PWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHG 365

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           +  D FT+V LL++CA +GAL  G  LH    +    E VY+G AL+DMY KCG +D A 
Sbjct: 366 MRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEAT 425

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF RM +RDV +W +MI G   +G G +A+  F QM   GF P S+T++ +L  CSH  
Sbjct: 426 AVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSS 485

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRT 363
           L++EG  +F+ M S + L P ++HYGC++DL  R+G L++A+ ++ T  P  P  V+W +
Sbjct: 486 LLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQT-MPMQPNAVIWGS 544

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           +L +C++H+N+++   A ++L++L       YV L  IY  ++      R R L++  G+
Sbjct: 545 ILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGV 604

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
           K T G+S I +  QVHKFV +D+SHP    I   +EEI  R K +GY+   S +AV    
Sbjct: 605 KKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVDVDE 664

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIV 531
            E   E++   HSEK+AIAFGL + P    + IVKNLR            S  ++R++IV
Sbjct: 665 EEK--EQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWNREIIV 722

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RDR R+HHFRDG CSC D+W
Sbjct: 723 RDRSRFHHFRDGACSCNDFW 742



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 107/460 (23%), Positives = 189/460 (41%), Gaps = 74/460 (16%)

Query: 16  RQAHEIHGEWLLNSYA--ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAI 73
           R AH    E LL+S    IS    L Y   LF+++ +  T  +++ +RA  Q+ +     
Sbjct: 27  RIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHSTTFLFDTALRACLQASAGADHP 86

Query: 74  FYYNHMLMASLSRPDTFTFTFTLKACERVKALNK--CQELHGFVIRSGYERCV-VVSTNL 130
                 + +   R   FTF F  + C          C  LH   +R+       +V+  L
Sbjct: 87  VLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLHAACLRTMLPSAAPLVANPL 146

Query: 131 MRGYAANGVIEAARSVFDNMP-------------------------------ERDLVSWN 159
           +  YA+ G+ + AR  FD +P                               ER++VSW 
Sbjct: 147 IHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWT 206

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH----------------- 202
           S+I+ Y++A    +A+  +  M  + V  D   ++  LS+C+                  
Sbjct: 207 SLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQK 266

Query: 203 ---------VGALNMGIFLHRIACEMGFVESVYVG------NALVDMYAKCGNLDSAFCV 247
                    V  ++M      IA      ++V  G      NA++D Y K G++D A  +
Sbjct: 267 RIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSL 326

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F +M  RDV+++NSMI GY   GR  +A+  F QM   G   D+ T + LL  C+  G +
Sbjct: 327 FDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGAL 386

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
             G    H  + +  ++  +     L+D+Y + G++++A  V +     D   W  ++  
Sbjct: 387 PHG-RALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAG 445

Query: 368 CKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLATIYACT 405
              +    +G+ A+++  Q+  +         +A + AC+
Sbjct: 446 LAFN---GMGKDALESFCQMKRDGFQPTSVTYIAVLTACS 482


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/525 (36%), Positives = 293/525 (55%), Gaps = 19/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+Q++     +W SLI  +AQ+  P++AI     ML     +P+ FTF   LKA  
Sbjct: 105 ARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRF-KPNGFTFASLLKAAG 163

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
                   +++H   ++ G+   V V + L+  YA  G ++ A +VFD +  ++ VSWN+
Sbjct: 164 AYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNA 223

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS + +      AL  +  M         FT   + SS A +GAL  G ++H    +  
Sbjct: 224 LISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSR 283

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              + +VGN L+DMYAK G++  A  VF R+  +D+++WNSM+  +  +G G EA+S F+
Sbjct: 284 QKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFE 343

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M  +G + + ITFL +L  CSH GLV+EG  YF MM   Y+L+P I HY  +V L GRA
Sbjct: 344 EMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMM-KEYDLEPEIDHYVTVVALLGRA 402

Query: 341 GKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G L  AL  I    P +P   +W  LL +C++H+N ++G+ A  ++ +L+   +G  VLL
Sbjct: 403 GLLNYALVFI-FKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLL 461

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
             IYA T   +  AR R ++K+ G+K  P  SW+E+ N VH FV +D +HP A+ IY+  
Sbjct: 462 YNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMW 521

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
            EI  + +  GY  D   V +     E   E +  YHSEKLA+AF L   P G ++RI+K
Sbjct: 522 GEISKKIRKEGYVPDMDYVLLHVDDQEK--EANLQYHSEKLALAFALIEMPAGATIRIMK 579

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           N+R            S  + R+++VRD  R+HHF  G CSCGDYW
Sbjct: 580 NIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 143/280 (51%), Gaps = 3/280 (1%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P    +   + AC + K L   +++H  +  S +     +  +L+  Y     +  AR+V
Sbjct: 49  PTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNV 108

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD M  +D+VSW S+I+ Y Q    +EA+ L   M       +GFT   LL +       
Sbjct: 109 FDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
             G  +H +A + G+ E VYVG+AL+DMYA+CG +D A  VF ++  ++ +SWN++I G+
Sbjct: 169 GTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV-EYFHMMVSRYNLKP 325
              G G+ A+  F +ML  GF     T+  +    +  G +E+G   + H++ SR  L  
Sbjct: 229 ARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTA 288

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            + +   L+D+Y ++G +  A +V +     D V W ++L
Sbjct: 289 FVGN--TLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSML 326



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 123/279 (44%), Gaps = 15/279 (5%)

Query: 3   LKKHARYVGLNKARQAHEIH-----------GEWLLNSYAISVSSSLSYAQLLFNQIQNP 51
           LK    Y      RQ H +            G  LL+ YA      +  A  +F+++ + 
Sbjct: 159 LKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYA--RCGKMDMATAVFDKLDSK 216

Query: 52  QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111
              +WN+LI  FA+      A+  +  ML         FT++    +  R+ AL + + +
Sbjct: 217 NGVSWNALISGFARKGDGESALMTFAEMLRNGF-EATHFTYSSVFSSIARLGALEQGKWV 275

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           H  VI+S  +    V   L+  YA +G +  AR VFD +  +DLV+WNS+++ + Q    
Sbjct: 276 HAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLG 335

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
            EA+  +E MR   V L+  T +C+L++C+H G +  G     +  E      +     +
Sbjct: 336 KEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTV 395

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSMIVGYGVH 269
           V +  + G L+ A     +M      + W +++    +H
Sbjct: 396 VALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/521 (38%), Positives = 292/521 (56%), Gaps = 18/521 (3%)

Query: 45  FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
           F  +       W+ +I  FAQS    +A+  +  M  A +  P+ FTF+  L+A   +++
Sbjct: 205 FGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVI-PNQFTFSSVLQASADIES 263

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L+  + +HG  +++G    V VS  LM  YA  G IE +  +F+ + +R+ VSWN+II  
Sbjct: 264 LDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVS 323

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
           Y Q      AL L+  M    V     T   +L +CA + AL +G+ +H +  +  + + 
Sbjct: 324 YVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQD 383

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           V VGNAL+DMYAKCG++  A  +F  +  RD +SWN++I GY +HG G EAI  F  M  
Sbjct: 384 VAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKE 443

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
               PD +TF+G+L  CS+ G ++EG +YF  M   Y ++P ++HY C+V L GR+G L+
Sbjct: 444 TKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLD 503

Query: 345 KALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
           +A++ I    P +P  ++WR LLG+C IH +VE+G I+ + +++LE      +VLL+ IY
Sbjct: 504 QAVKFIE-DIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIY 562

Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
           A  +    VA  RK +K  G+K  PG SWIE    VH F V D SH D  +I   LE + 
Sbjct: 563 ARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLN 622

Query: 463 HRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR- 521
            + +  GY+    L AV     +D  E+    HSE+LA+AFGL   P G  +RI+KNLR 
Sbjct: 623 MKTRKAGYSP--QLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRI 680

Query: 522 -----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                      S    RD+IVRD  R+HHF +G CSC DYW
Sbjct: 681 CVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 222/447 (49%), Gaps = 17/447 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+++Y  SVS  +S A+ +F++I +    +W  +I ++A++    +A+ +++ M +A
Sbjct: 84  GTALIDAY--SVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVA 141

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
              +P+ FTF   LKAC  ++  +  + +H  V+++ YER + V   L+  Y   G  + 
Sbjct: 142 GF-KPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDD 200

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A   F +MP+ D++ W+ +IS + Q+    +AL+++ +MR   V  + FT   +L + A 
Sbjct: 201 AWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASAD 260

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + +L++   +H  A + G    V+V NAL+  YAKCG ++ +  +F  +  R+ +SWN++
Sbjct: 261 IESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTI 320

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           IV Y   G G+ A+S F  ML        +T+  +L  C+    +E G++  H + ++  
Sbjct: 321 IVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQ-VHCLTAKTI 379

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
               +     L+D+Y + G ++ A  + +     D V W  ++    +H  + +  I M 
Sbjct: 380 YGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMH-GLGVEAIKMF 438

Query: 383 NLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIK------TTPGWSWIE 433
           NL++       +   +  + AC+     +EG      + +  GI+      T   W    
Sbjct: 439 NLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGR 498

Query: 434 IGN--QVHKFVVDDKSHPDADMIYRKL 458
            GN  Q  KF+ D    P   MI+R L
Sbjct: 499 SGNLDQAVKFIEDIPFEPSV-MIWRAL 524



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 157/325 (48%), Gaps = 2/325 (0%)

Query: 43  LLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
           ++F+++    T ++ +LI  +AQS   ++A   +   L       + F FT  LK    +
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFAR-LHGEGHELNPFVFTTVLKLLVSM 59

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
           +     + +HG V++ GY     + T L+  Y+ +G +  AR VFD +  +D+VSW  +I
Sbjct: 60  EWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMI 119

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           + Y +     EAL+ + +MR      + FT   +L +C  +   + G  +H    +  + 
Sbjct: 120 ASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYE 179

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
             +YVG  L+++Y +CG+ D A+  F  M K DV+ W+ MI  +   G+ ++A+  F QM
Sbjct: 180 RDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQM 239

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
             A   P+  TF  +L   +    ++   +  H    +  L   +     L+  Y + G 
Sbjct: 240 RRAFVIPNQFTFSSVLQASADIESLDLS-KTIHGHALKAGLSTDVFVSNALMACYAKCGC 298

Query: 343 LEKALEVINTSSPSDPVLWRTLLGS 367
           +E+++E+    S  + V W T++ S
Sbjct: 299 IEQSMELFEALSDRNDVSWNTIIVS 323


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 183/528 (34%), Positives = 292/528 (55%), Gaps = 17/528 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA+ +FN +       W+++I  +    S   A+  Y+ ML      P   T    L+
Sbjct: 261 LFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLR 320

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC ++  L + ++LH  +I+SG +    V  +L+  YA  G+++ A    D M  +D VS
Sbjct: 321 ACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVS 380

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           +++IIS   Q  +  +AL ++ +M+   +     T++ LL +C+H+ AL  G   H    
Sbjct: 381 YSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTV 440

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             GF     + NA++DMY+KCG +  +  +F RM+ RD++SWN+MI+GYG+HG   EA+S
Sbjct: 441 VRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALS 500

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+++   G  PD +T + +L  CSH GLV EG  +F  M   +N+KP + HY C+VDL 
Sbjct: 501 LFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLL 560

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            RAG L++A   I    P  P   +W  LL +C+ H+N+E+GE   K +  L     G++
Sbjct: 561 ARAGNLDEAYTFIQ-RMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNF 619

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VL++ IY+     +  A  R + + +G K +PG SW+EI   +H F+   +SHP +  I 
Sbjct: 620 VLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASIN 679

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           +KL+E++ + K +GY  D S V       E   E+   YHSEK+AIAFG+  T   + + 
Sbjct: 680 KKLQELLVQMKKLGYRADSSFVLHDVEEEEK--EQILLYHSEKVAIAFGILNTSPSSRIL 737

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + KNLR            ++   R++ VRD  R+HHF+DG+C+C D+W
Sbjct: 738 VTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 201/387 (51%), Gaps = 17/387 (4%)

Query: 27  LNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR 86
           L  Y IS  + +  A+ +F+QI  P    WN +IR +A S    Q+I+ Y HML   ++ 
Sbjct: 47  LARYHIS-RNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVT- 104

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P  FTF F LKAC  ++AL   + +H      G    + VST L+  YA  G +  A+++
Sbjct: 105 PTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTL 164

Query: 147 FDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           F+++   +RD+V+WN++I+ ++  + H + +    +M+   V  +  TLV +L +     
Sbjct: 165 FNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQAN 224

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           AL+ G  +H       F ++V +  AL+DMYAKC  L  A  +F+ + K++ + W++MI 
Sbjct: 225 ALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIG 284

Query: 265 GYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYN 322
           GY +H    +A++ +  ML + G +P   T   +L  C+    ++ G + + HM+ S  +
Sbjct: 285 GYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMD 344

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIG--EIA 380
           L   +     L+ +Y + G ++ A+  ++     D V +  ++  C     V+ G  E A
Sbjct: 345 LDTTVG--NSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGC-----VQNGYAEKA 397

Query: 381 MKNLVQLEAASAGDYV--LLATIYACT 405
           +    Q++++    Y+  ++A + AC+
Sbjct: 398 LLIFRQMQSSGIAPYLETMIALLPACS 424



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 149/315 (47%), Gaps = 9/315 (2%)

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
           +T L R + +   I+ AR VFD +P+  +V WN +I  Y  +    +++ LY  M    V
Sbjct: 44  ATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGV 103

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
               FT   LL +C+ + AL +G  +H  A  +G    +YV  AL+ MYAKCG+L  A  
Sbjct: 104 TPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQT 163

Query: 247 VFSRM--RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
           +F+ +  + RD+++WN+MI  +  H    + I    QM  AG  P+S T + +L      
Sbjct: 164 LFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQA 223

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364
             + +G +  H    R      +     L+D+Y +   L  A ++ NT +  + V W  +
Sbjct: 224 NALHQG-KAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAM 282

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL----IKS 420
           +G   +H ++        +++ +   +     L   + AC +  + + R +KL    IKS
Sbjct: 283 IGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTD-LKRGKKLHCHMIKS 341

Query: 421 N-GIKTTPGWSWIEI 434
              + TT G S I +
Sbjct: 342 GMDLDTTVGNSLISM 356


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 203/530 (38%), Positives = 297/530 (56%), Gaps = 20/530 (3%)

Query: 39  SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPL---QAIFYYNHMLMASLSRPDTFTFTFT 95
           SYA+ LF+QI  P    +NSLIRA + +         +  Y  ML A    P++FT  F 
Sbjct: 78  SYARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFA 137

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM-PERD 154
           LKAC  V AL + ++LH    R G E    V T L+  YA    +  AR+VFD M  +++
Sbjct: 138 LKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKN 197

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           L +W+++I  Y++     EAL L+  M+  DV  D  T+V ++S+CA  GAL++G ++H 
Sbjct: 198 LAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHA 257

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                G    + +  AL+DMYAKCG ++ A  VF  M +RD  +W++MIVG  +HG  + 
Sbjct: 258 FIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEV 317

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F +ML     P+++TF+G+L  C+H GLV EG  Y+  M     +KP +++YGC+V
Sbjct: 318 ALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTM-QELGIKPSMENYGCMV 376

Query: 335 DLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           DL+ R+  L++A   V   + P + V+WRTLL + K     +I + A K L++LE  +  
Sbjct: 377 DLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPCNPE 436

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
           +YVLL+ +YA     + V+  RK +K N +    G S IEI   +HKFVV D SHP+   
Sbjct: 437 NYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSHPEIKE 496

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           I   L EI  R    G+    +  AV     E+  E +   HSE+LAIA+GL  T     
Sbjct: 497 IRLLLREIADRVVRAGHKPWTA--AVLHDVGEEEKEVALCEHSERLAIAYGLLKTKAPHV 554

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R+VKNLR            S +Y R++IVRDRVR+H F +G CSC D+W
Sbjct: 555 IRVVKNLRFCPDCHEVAKIVSKSYDREIIVRDRVRFHRFVEGSCSCKDFW 604


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 197/570 (34%), Positives = 327/570 (57%), Gaps = 31/570 (5%)

Query: 7   ARYVGLNKARQAH------EIHGEWLLNSYAISVSSSLSYAQL---LFNQIQNPQTQAWN 57
           AR   + +A+  H      E+ G+  L++  I+  S   + +L   +F+ +      +WN
Sbjct: 74  ARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWN 133

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
           ++I  + ++    +A+  +  M        + FT +  L AC       +C++LH   ++
Sbjct: 134 TMIGLYTRNRMESEALDIFWEMRNEGFKFSE-FTISSVLSACGANCDALECKKLHCLSMK 192

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177
           +  +  + V T L+  YA  G+I  A  VF++M ++  V+W+S+++ Y Q+  + EAL L
Sbjct: 193 TSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLL 252

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
           Y R +   +  + FTL  ++ +C+++ AL  G  +H +  + GF  +V+V ++ VDMYAK
Sbjct: 253 YRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAK 312

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
           CG+L  ++ +FS ++++++  WN++I G+  H R  E +  F++M   G HP+ +TF  L
Sbjct: 313 CGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSL 372

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           L  C H GLVEEG  +F +M + Y L P + HY C+VD+ GRAG L +A E+I  S P +
Sbjct: 373 LSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIK-SIPFE 431

Query: 358 PV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415
           P   +W +LL SC++ +N+E+ E+A K L +LE  +AG++VLL+ IYA  K  E +A++R
Sbjct: 432 PTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSR 491

Query: 416 KLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKD 473
           KL++   +K   G SWI+I ++VH F V + SHP    I   L+ ++   +  GY  + +
Sbjct: 492 KLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKFGYKPSVE 551

Query: 474 ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------ 521
             L  V     E+ L +    HSEKLA+ FGL   P+G+++RI+KNLR            
Sbjct: 552 HELHDVEIGKKEELLMQ----HSEKLALVFGLMCLPEGSTVRIMKNLRICVDCHEFMKAA 607

Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           S+A  R +IVRD  R+HHF DG CSCG++W
Sbjct: 608 SMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 3/281 (1%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           F   L+ C R  A+ + +  HG  +R   +  V +S  L+  Y+  G +E AR VFD M 
Sbjct: 66  FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGML 125

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC-AHVGALNMGI 210
           ER LVSWN++I  YT+     EAL ++  MR E      FT+  +LS+C A+  AL    
Sbjct: 126 ERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKK 185

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            LH ++ +     ++YVG AL+D+YAKCG ++ A  VF  M+ +  ++W+SM+ GY    
Sbjct: 186 -LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSK 244

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
             +EA+  +++        +  T   ++C CS+   + EG +  H ++ +      +   
Sbjct: 245 NYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG-KQMHAVIRKSGFGSNVFVA 303

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
              VD+Y + G L ++  + +     +  LW T++     H
Sbjct: 304 SSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKH 344


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 181/513 (35%), Positives = 299/513 (58%), Gaps = 25/513 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W ++I  + Q+    QA+  ++ M    + +P+ FT++  L     V       E+H  
Sbjct: 373 SWTAMISGYLQNGDTDQAVNLFSLMRREGV-KPNHFTYSTILTVQHAVF----ISEIHAE 427

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           VI++ YE+   V T L+  +   G I  A  VF+ +  +D+++W+++++ Y QA    EA
Sbjct: 428 VIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEA 487

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSC-AHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
            K++ ++  E +  + FT   ++++C A   ++  G   H  A ++    ++ V ++LV 
Sbjct: 488 AKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVT 547

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           +YAK GN++SA  +F R ++RD++SWNSMI GY  HG+  +A+  F++M       D+IT
Sbjct: 548 LYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAIT 607

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-T 352
           F+G++  C+H GLV +G  YF++M++ +++ P ++HY C++DLY RAG L KA+++IN  
Sbjct: 608 FIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGM 667

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
             P    +WR +L + ++HRN+E+G++A + ++ LE   +  YVLL+ IYA   +     
Sbjct: 668 PFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKV 727

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
             RKL+    +K  PG+SWIE+ N+ + F+  D SHP +D IY KL E+  R + +GY  
Sbjct: 728 NVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQP 787

Query: 473 DESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
           D + V   +     E  L    ++HSE+LAIAFGL  T     L+IVKNLR         
Sbjct: 788 DTNYVFHDIEDEQKETIL----SHHSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSFI 843

Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              S+   R ++VRD  R+HHF+ GLCSCGDYW
Sbjct: 844 KLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 154/300 (51%), Gaps = 5/300 (1%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRA 62
           ++++  +   N   Q+H +     LN+  +   S   +AQ LF+Q      +  N L+  
Sbjct: 21  IRRYQLHCHANPLLQSHVV----ALNARTLLRDSDPRFAQQLFDQTPLRDLKQHNQLLFR 76

Query: 63  FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER 122
           +++     +A+  +  +  + LS PD++T +  L  C         +++H   ++ G   
Sbjct: 77  YSRCDQTQEALHLFVSLYRSGLS-PDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVH 135

Query: 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182
            + V  +L+  Y   G +   R VFD M +RD+VSWNS+++ Y+   F+ +  +L+  M+
Sbjct: 136 HLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQ 195

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
            E    D +T+  ++++ A+ GA+ +G+ +H +  ++GF     V N+L+ M +K G L 
Sbjct: 196 VEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLR 255

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A  VF  M  +D +SWNSMI G+ ++G+  EA   F  M +AG  P   TF  ++  C+
Sbjct: 256 DARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCA 315



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 169/377 (44%), Gaps = 12/377 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+++ +    +WNSL+  ++ +    Q    +  M +    RPD +T +  + A     
Sbjct: 159 VFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGY-RPDYYTVSTVIAALANQG 217

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           A+    ++H  V++ G+E   +V  +L+   + +G++  AR VFDNM  +D VSWNS+I+
Sbjct: 218 AVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIA 277

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            +      LEA + +  M+         T   ++ SCA +  L +   LH    + G   
Sbjct: 278 GHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLST 337

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRK-RDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
           +  V  AL+    KC  +D AF +FS M   + V+SW +MI GY  +G  D+A++ F  M
Sbjct: 338 NQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLM 397

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
              G  P+  T+  +L    H   + E     H  V + N +        L+D + + G 
Sbjct: 398 RREGVKPNHFTYSTILT-VQHAVFISE----IHAEVIKTNYEKSSSVGTALLDAFVKIGN 452

Query: 343 LEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLAT 400
           +  A++V       D + W  +L     +      E A K   QL  E     ++   + 
Sbjct: 453 ISDAVKVFELIETKDVIAWSAMLAG---YAQAGETEEAAKIFHQLTREGIKPNEFTFCSI 509

Query: 401 IYACTKDEEGVARTRKL 417
           I ACT     V + ++ 
Sbjct: 510 INACTAPTASVEQGKQF 526



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 134/275 (48%), Gaps = 9/275 (3%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A+ +FD  P RDL   N ++  Y++     EAL L+  +    +  D +T+ C+LS CA 
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCA- 113

Query: 203 VGALN--MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
            G+ N  +G  +H    + G V  + VGN+LVDMY K GN+     VF  M  RDV+SWN
Sbjct: 114 -GSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWN 172

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           S++ GY  +   D+    F  M + G+ PD  T   ++   ++QG V  G++  H +V +
Sbjct: 173 SLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQ-IHALVVK 231

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEI 379
              +        L+ +  ++G L  A  V +     D V W +++    I+ +++E  E 
Sbjct: 232 LGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFET 291

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEE-GVAR 413
              N +QL  A        + I +C   +E G+ R
Sbjct: 292 F--NNMQLAGAKPTHATFASVIKSCASLKELGLVR 324


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 197/524 (37%), Positives = 294/524 (56%), Gaps = 28/524 (5%)

Query: 50  NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ 109
           +P T ++N+ IR+ A    P  A+  Y  ML+  LS P+ +T+   L AC R+   +  +
Sbjct: 54  HPTTFSYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPR 113

Query: 110 E------LHGFVIRSGYE-RCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNS 160
           E      +H  + R G E R   +S +++  YAA G + AAR VFD  P  +RDL  WNS
Sbjct: 114 EAAAGTAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNS 173

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  Y     +   L+L+ +M    V  D  TL+ ++S+C+H+GAL+ G + H       
Sbjct: 174 LLHAYLSQGLYTHVLRLFRQM----VATDEVTLLAVVSACSHLGALDTGRWAHAYHARTC 229

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              +  +G AL++MY +CG+++SA+ VF  M  +DV +W+ MI G  V+G   +A+  F 
Sbjct: 230 RNTTRNLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFA 289

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M   G  PDSIT   +L  CSH G+V+EG  + H M   Y+L+P I+HYGC+VDL GRA
Sbjct: 290 EMKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRA 349

Query: 341 GKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+LE+AL +I T    +D  LW  LL +C+ H+NV++G++A   +++L+   AG  V L+
Sbjct: 350 GQLEEALALIETVPFKADVALWGALLVACRAHKNVDMGQMAAMEILKLDPHHAGACVFLS 409

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
             YA     + V   R  +K + I   PG S +E+   V++F+  D SHP +D IY  L+
Sbjct: 410 NAYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQSDRIYAMLD 469

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           E+       G+      VA      E+  E   + HSEKLA+A GL +T  G  +RIVKN
Sbjct: 470 EVCKTLSLKGHRPSTKEVAF--DIDEEDKEVCISQHSEKLALALGLISTRRGAVIRIVKN 527

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S  Y R ++VRDR R+HHF++G CSC DYW
Sbjct: 528 LRICEDCHSVMKIVSEVYDRVIVVRDRNRFHHFKNGSCSCLDYW 571


>gi|115440727|ref|NP_001044643.1| Os01g0819800 [Oryza sativa Japonica Group]
 gi|21104789|dbj|BAB93376.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534174|dbj|BAF06557.1| Os01g0819800 [Oryza sativa Japonica Group]
          Length = 646

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 214/545 (39%), Positives = 305/545 (55%), Gaps = 39/545 (7%)

Query: 38  LSYAQLLFNQIQ----NPQT--QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT 91
           L  A+ L +++      P T   A+NSLI   A    P      +  M +A+  R D  T
Sbjct: 110 LPLARQLLDELPLASTPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVT 169

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA--ANGVIEAARSVFDN 149
               L A   V  L    +LH    RSG      V+  L+  YA    G    AR VF+ 
Sbjct: 170 ----LLALVPVAPLGIVPQLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEE 225

Query: 150 MPE--RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG---LDGFTLVCLLSSCAHVG 204
           MP   RDLVSWN++IS + Q    +EA++LY RMR  + G    D  TLV +LSSCAH G
Sbjct: 226 MPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTG 285

Query: 205 ALNMGIFLHRIACEM--GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           A  +G+ + R   +   GF +++ + NAL++ +A+CG+L  A  +F  M +R V+SW ++
Sbjct: 286 ARRVGLDVERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTTL 345

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I+GYG+HG+GD A+  F+ M+     PDS+  +GLL  CSH G+ +EG +YF  M   Y 
Sbjct: 346 IIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYC 405

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIA 380
           L+P ++HY C+VDL GRAG+L++A E+I  S P  +D  +W  LLG+CKIH+NVE+GE A
Sbjct: 406 LRPKLEHYTCMVDLLGRAGRLDEARELI-ASMPMAADGAVWGALLGACKIHKNVEMGEEA 464

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + +V LE A+ G YVL+A IYA     +GVA+ R  ++  G++  PG S++E   +VH 
Sbjct: 465 FERVVSLEPANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHL 524

Query: 441 FVVDDKSHPDADMIYRKLEEI--MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           F+ DD SHP A  IY  + E+  M + K  G   D        + +E        +HSEK
Sbjct: 525 FMADDHSHPQARRIYELVVELERMVKEKTGG---DVVEERAEKAVAEAAAVPLVGFHSEK 581

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LA+AFGL  T  G+ + ++KNLR            S   +R  +VRD  R+H F +G CS
Sbjct: 582 LAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACS 641

Query: 547 CGDYW 551
           C DYW
Sbjct: 642 CRDYW 646


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 192/542 (35%), Positives = 316/542 (58%), Gaps = 24/542 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N+Y  S    +  A+ +F+ +      +WN++I  + ++    +A+  +  M      
Sbjct: 102 LINAY--SKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFK 159

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
             + FT +  L AC       +C++LH   +++  +  + V T L+  YA  G+I+ A  
Sbjct: 160 FSE-FTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQ 218

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF++M ++  V+W+S+++ Y Q   + EAL LY R +   +  + FTL  ++ +C+++ A
Sbjct: 219 VFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAA 278

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H + C+ GF  +V+V ++ VDMYAKCG+L  ++ +FS ++++++  WN++I G
Sbjct: 279 LIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISG 338

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           +  H R  E +  F++M   G HP+ +TF  LL  C H GLVEEG  +F +M + Y L P
Sbjct: 339 FAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSP 398

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKN 383
            + HY C+VD+ GRAG L +A E+I  S P DP   +W +LL SC++++N+E+ E+A + 
Sbjct: 399 NVVHYSCMVDILGRAGLLSEAYELIK-SIPFDPTASIWGSLLASCRVYKNLELAEVAAEK 457

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           L +LE  +AG++VLL+ IYA  K  E +A++RKL++   +K   G SWI+I ++VH F V
Sbjct: 458 LFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSV 517

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
            +  HP    I   L+ ++ + +  GY  + +  L  V     E+ L +    HSEKLA+
Sbjct: 518 GESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQ----HSEKLAL 573

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
            FGL   P+ + +RI+KNLR            S+A  R +IVRD  R+HHF DG CSCGD
Sbjct: 574 VFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGD 633

Query: 550 YW 551
           +W
Sbjct: 634 FW 635



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 140/277 (50%), Gaps = 3/277 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+ C R  A+ + +  HG +IR   E  V +   L+  Y+  G +E AR VFD M ER L
Sbjct: 68  LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSL 127

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA-HVGALNMGIFLHR 214
           VSWN++I  YT+     EAL ++  MR E      FT+  +LS+C  +  AL     LH 
Sbjct: 128 VSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKK-LHC 186

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
           ++ +     ++YVG AL+D+YAKCG +  A  VF  M+ +  ++W+SM+ GY  +   +E
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 246

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  +++        +  T   ++C CS+   + EG +  H ++ +      +      V
Sbjct: 247 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG-KQMHAVICKSGFGSNVFVASSAV 305

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           D+Y + G L ++  + +     +  LW T++     H
Sbjct: 306 DMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKH 342



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 6/212 (2%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L  CA  GA+      H     +     V + N L++ Y+KCG ++ A  VF  M +R 
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE--Y 313
           ++SWN+MI  Y  +    EA+  F +M   GF     T   +L  C   G+  + +E   
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC---GVNCDALECKK 183

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRN 373
            H +  +  +   +     L+DLY + G ++ A++V  +      V W +++     ++N
Sbjct: 184 LHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKN 243

Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
            E   +  +   Q  +     + L + I AC+
Sbjct: 244 YEEALLLYRR-AQRMSLEQNQFTLSSVICACS 274


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 188/529 (35%), Positives = 299/529 (56%), Gaps = 23/529 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLS--PLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           A+ +F+ ++     +W +L+  + +       +A+  +++ML+     P+ FTF+  LKA
Sbjct: 316 ARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKA 375

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
           C  +   +  +++HG  I+ G      V   L+  YA +G +E+AR  FD + E++LVS 
Sbjct: 376 CASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVS- 434

Query: 159 NSIISCYTQASFHLEALKLYER-MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
            +++       F+L + +  +R + +   G+  FT   LLS  A +G +  G  +H +  
Sbjct: 435 ETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVV 494

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           ++GF   + V NAL+ MY+KCGN ++A  VF+ M   +V++W S+I G+  HG   +A+ 
Sbjct: 495 KIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALE 554

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F  ML  G  P+ +T++ +L  CSH GL++E  ++F  M   + + P ++HY C+VDL 
Sbjct: 555 LFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLL 614

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GR+G L +A+E IN+    +D ++WRT LGSC++HRN ++GE A K +++ E      Y+
Sbjct: 615 GRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYI 674

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+ +YA     E VA  RK +K   I    G SWIE+ NQVHKF V D  HP A  IY 
Sbjct: 675 LLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYE 734

Query: 457 KLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           KL+E+  + K +GY  +   V   V     E +L +    HSEKLA+AF L +TP+   +
Sbjct: 735 KLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQ----HSEKLAVAFALISTPNPKPI 790

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+ KNLR            S+   R+++VRD  R+HH +DG CSC DYW
Sbjct: 791 RVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 181/377 (48%), Gaps = 13/377 (3%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           + L  A+ +F++++      W  +I   AQ     +AI  +  ML++S   PD FT T  
Sbjct: 209 ADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGL 268

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           +  C  ++ L+  +ELH +VIRSG    + V  +L+  YA  G+++ AR VFD M E ++
Sbjct: 269 ISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNV 328

Query: 156 VSWNSIISCYTQ--ASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           +SW ++++ Y +    +  EA++++  M  +  V  + FT   +L +CA +   + G  +
Sbjct: 329 MSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQV 388

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW----NSMIVGYGV 268
           H    ++G      VGN LV +YAK G ++SA   F  + +++++S     ++ +  + +
Sbjct: 389 HGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNL 448

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +   D      +++   G    S T+  LL G +  G + +G E  H MV +   +  + 
Sbjct: 449 NSEQD----LDREVEYVGSGVSSFTYASLLSGAACIGTIGKG-EQIHAMVVKIGFRTDLS 503

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
               L+ +Y + G  E AL+V N     + + W +++     H           N+++  
Sbjct: 504 VNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLE-T 562

Query: 389 AASAGDYVLLATIYACT 405
                D   +A + AC+
Sbjct: 563 GVKPNDVTYIAVLSACS 579



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 160/334 (47%), Gaps = 26/334 (7%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           +Q  FN   NPQ                  +AI   N     S       T +  LK C 
Sbjct: 19  SQQNFNHFNNPQQLH---------------KAITTLNLTDTESTHNNKLITSSLLLKQCI 63

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM--PERDLVSW 158
           R K  +  + LH  +  S      ++  +L+  Y+ +     A S+F +M   +RD+VS+
Sbjct: 64  RTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSY 123

Query: 159 NSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           +SIISC+      L+A+++++++  +D V  + +    ++ +C   G    G+ L     
Sbjct: 124 SSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVL 183

Query: 218 EMGFVES-VYVGNALVDMYAK---CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
           + G+ +S V VG  L+DM+ K     +L+SA  VF +MR+++V++W  MI     +G  D
Sbjct: 184 KTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYND 243

Query: 274 EAISFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           EAI  F +ML+ +G+ PD  T  GL+  C+    +  G E  H  V R  L   +   GC
Sbjct: 244 EAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKE-LHSWVIRSGLVLDLC-VGC 301

Query: 333 -LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            LVD+Y + G +++A +V +     + + W  L+
Sbjct: 302 SLVDMYAKCGLVQEARKVFDGMREHNVMSWTALV 335


>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33760-like [Vitis vinifera]
          Length = 561

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 196/532 (36%), Positives = 297/532 (55%), Gaps = 47/532 (8%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93
            + S+ Y + LF  I NP +  +N++I+A ++      AI +Y  M+  S+ + + +TFT
Sbjct: 63  TAGSILYTRQLFFSITNPDSFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSN-YTFT 121

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
             +KAC  + AL   + +H  V+  GY+    V   L+  YA +G +  A+ VFD MPER
Sbjct: 122 AVIKACADISALRIGRPIHSHVLVCGYDSDSFVQAALIAFYAKSGDVGEAKKVFDRMPER 181

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
            +++WNS+IS Y Q  F  EA+ L+ RMR   V  D  T V +LS+C+  GAL++G ++H
Sbjct: 182 TIIAWNSMISGYDQNGFSKEAVGLFYRMRELGVEFDSATFVSVLSACSQSGALDLGCWVH 241

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
                  F  +V +G +L++MY +CGN+  A  VF  M +R+V++W +MI GYG+HG G 
Sbjct: 242 DYIVNNSFDVNVVLGTSLINMYTRCGNVSKAREVFDEMNERNVVAWTAMISGYGMHGYGR 301

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           EAI  F+ M + G   D                              Y L P ++H+ C+
Sbjct: 302 EAIELFRLMRIHGMRQD------------------------------YGLVPRVEHHVCM 331

Query: 334 VDLYGRAGKLEKALEVINTSSPSD--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           VD+ GRAG L +A + I      +  P LW  +LG+CK+H+N+++G    ++L+  E  +
Sbjct: 332 VDMLGRAGFLNEAFQYIKDLKQGEQAPALWTAMLGACKMHKNLDLGVQVAEHLLAAEPEN 391

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
              YVLL+ +YA     E V   R ++   G+K   G+S IE+G + + F + D+SHP+ 
Sbjct: 392 PSHYVLLSNVYALAGRMERVEMVRNMMIRKGLKKQVGYSIIEVGQKSYLFSMGDRSHPET 451

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
             IY+ L+E+M R+K  GY     LV       E+  E +  YHSEKLAIAFGL  T  G
Sbjct: 452 TEIYKYLDELMLRSKEAGYVPAPELVM--HELEEEEREYALRYHSEKLAIAFGLMKTSHG 509

Query: 512 TSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            ++RIVKNLR            S   +R++IVRD++R+HHF++GLCSC DYW
Sbjct: 510 MTIRIVKNLRMCEDCHSAIKFISNIANREIIVRDKLRFHHFKNGLCSCQDYW 561



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 146/300 (48%), Gaps = 4/300 (1%)

Query: 72  AIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131
           AIF+ N  L  +LS   +  +   L A  R+K L   Q++H  +I SG  R   + T L+
Sbjct: 2   AIFHGNQTLQTTLSPSHSPAYQVLLHAGPRLKPL---QQVHAHLIVSGSYRSRALLTKLL 58

Query: 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191
                 G I   R +F ++   D   +N+II   ++  F  +A+  Y RM  + +    +
Sbjct: 59  TLACTAGSILYTRQLFFSITNPDSFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSNY 118

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           T   ++ +CA + AL +G  +H      G+    +V  AL+  YAK G++  A  VF RM
Sbjct: 119 TFTAVIKACADISALRIGRPIHSHVLVCGYDSDSFVQAALIAFYAKSGDVGEAKKVFDRM 178

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
            +R +++WNSMI GY  +G   EA+  F +M   G   DS TF+ +L  CS  G ++ G 
Sbjct: 179 PERTIIAWNSMISGYDQNGFSKEAVGLFYRMRELGVEFDSATFVSVLSACSQSGALDLGC 238

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            + H  +   +    +     L+++Y R G + KA EV +  +  + V W  ++    +H
Sbjct: 239 -WVHDYIVNNSFDVNVVLGTSLINMYTRCGNVSKAREVFDEMNERNVVAWTAMISGYGMH 297


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 200/561 (35%), Positives = 312/561 (55%), Gaps = 55/561 (9%)

Query: 39  SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           +Y  LLF+Q+ +P    +++LIRA+A++     +I  Y  ML  ++S P +FTF+  L +
Sbjct: 63  TYPHLLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVS-PVSFTFS-ALFS 120

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD---- 154
             +  +L     LH F+   G+   + V   ++  Y   GV++ AR VFD MP RD    
Sbjct: 121 LLKNPSLGSQLHLHAFLF--GFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTW 178

Query: 155 ---------------------------LVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
                                      +V+W S+++ Y+Q +   +AL+ + +MR   V 
Sbjct: 179 TELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVV 238

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIA--CEMGFVESVYVGNALVDMYAKCGNLDSAF 245
            D  TLV  +S+CA +G      ++  IA     G   +V+VG+AL+DMY+KCGN++ A+
Sbjct: 239 TDEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAY 298

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  M++ +V S++SMIVG+ VHGR   AI  F +ML  G  P+ +TF+GL   CSH G
Sbjct: 299 NVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAG 358

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRT 363
           +VE+G + F  M   Y + P   HY C+ DL GRAG LEKAL+++ T  P +P   +W  
Sbjct: 359 MVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQT-MPMEPNGGVWGA 417

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LLG+  IH N ++ EIA ++L +LE  + G+Y+LL+  YA     + V+R RKL++   +
Sbjct: 418 LLGASHIHGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQL 477

Query: 424 KTTPGWSWIEIGNQ-VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           +  PG SW+E  N  +H+F   D  HP+ + I + L++++ R K  GY     L +V   
Sbjct: 478 RKNPGCSWVEAKNGIIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGY--QPKLNSVPYD 535

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
             ++        HSEKLA+A+GL +T  G++++I+KNLR            S    R +I
Sbjct: 536 IDDEGKRCLLVSHSEKLALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKII 595

Query: 531 VRDRVRYHHFRDGLCSCGDYW 551
           VRD +R+HHF +G CSC ++W
Sbjct: 596 VRDNMRFHHFLNGACSCNNFW 616



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 118/286 (41%), Gaps = 48/286 (16%)

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA---ARSVFDNMPERDLVSWNS 160
            LN  ++LH  + R+   +   V TNL+R       I        +F  +   +   +++
Sbjct: 23  TLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSA 82

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I  Y +      +++LY  M   +V    FT   L S   +    ++G  LH  A   G
Sbjct: 83  LIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNP---SLGSQLHLHAFLFG 139

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD------- 273
           FV  +YVGN ++ MY K G LD A  VF  M  RDV++W  +IV Y   G  D       
Sbjct: 140 FVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFV 199

Query: 274 ------------------------EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL--- 306
                                   +A+ FF++M  AG   D IT +G +  C+  G+   
Sbjct: 200 GLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGY 259

Query: 307 ---VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
              + E  E      SR+     +     L+D+Y + G +E+A  V
Sbjct: 260 ADWIREIAE-----SSRFGSGSNVFVGSALIDMYSKCGNVEEAYNV 300


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 199/593 (33%), Positives = 312/593 (52%), Gaps = 50/593 (8%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLNSYAISVSS-----SLSYAQLLFNQIQNPQTQAWN 57
           L  + R   + +AR       EW + S+   +S       +S A+ LF+++      +WN
Sbjct: 169 LAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWN 228

Query: 58  SLIRAFAQ-----------SLSPLQAIFYY---------NHML------MASLSRPDTFT 91
            ++  +A+             +P++ +F +         N ML        ++   +  +
Sbjct: 229 IMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS 288

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           +   + A  + + +++ +EL   +      R V     ++ GYA  G++E A++VFD MP
Sbjct: 289 WNAMVAAYIQRRMMDEAKELFNMMPC----RNVASWNTMLTGYAQAGMLEEAKAVFDTMP 344

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           ++D VSW ++++ Y+Q     E L+L+  M      ++     C+LS+CA + AL  G+ 
Sbjct: 345 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 404

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           LH      G+    +VGNAL+ MY KCGN++ A   F  M +RDV+SWN+MI GY  HG 
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 464

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           G EA+  F  M      PD IT +G+L  CSH GLVE+G+ YF+ M   + +    +HY 
Sbjct: 465 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYT 524

Query: 332 CLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           C++DL GRAG+L +A +++ +     D  +W  LLG+ +IHRN E+G  A + + +LE  
Sbjct: 525 CMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPE 584

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           +AG YVLL+ IYA +       + R +++  G+K  PG+SWIE+ N+VH F   D  HP+
Sbjct: 585 NAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPE 644

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
            + IY  LE++  R K  GY     +V       E   E    YHSEKLA+A+G+   P 
Sbjct: 645 KEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEK--EHMLKYHSEKLAVAYGILNIPP 702

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G  +R++KNLR            S    R +++RD  R+HHFR G CSCGDYW
Sbjct: 703 GRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 185/454 (40%), Gaps = 72/454 (15%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-----------PLQAIFYYNHML- 80
           S +  L  A  LF  I  P   ++N+L+ A A S S           P++    YN M+ 
Sbjct: 80  SANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMIS 139

Query: 81  ------MASLSR--------PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV 126
                 + SL+R         D  ++   L A  R   + + + L  F  R+ ++   V+
Sbjct: 140 SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGL--FNSRTEWD---VI 194

Query: 127 STN-LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           S N LM GY   G +  AR +FD MP RD+VSWN ++S Y +    +EA +L++     D
Sbjct: 195 SWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRD 254

Query: 186 VGLDGFTLVCLLSSCAHVGALN-----MGIFLHRIACEMGFVESVYVGNALVDM------ 234
           V    FT   ++S  A  G L            R A     + + Y+   ++D       
Sbjct: 255 V----FTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFN 310

Query: 235 ----------------YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
                           YA+ G L+ A  VF  M ++D +SW +M+  Y   G  +E +  
Sbjct: 311 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQL 370

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M   G   +   F  +L  C+    +E G++  H  + R     G      L+ +Y 
Sbjct: 371 FIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ-LHGRLIRAGYGVGCFVGNALLAMYF 429

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYV 396
           + G +E A          D V W T++     H     G+ A++  ++++  +    D  
Sbjct: 430 KCGNMEDARNAFEEMEERDVVSWNTMIAGYARH---GFGKEALEIFDMMRTTSTKPDDIT 486

Query: 397 LLATIYACTKD---EEGVARTRKLIKSNGIKTTP 427
           L+  + AC+     E+G++    +    G+   P
Sbjct: 487 LVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKP 520



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 119/299 (39%), Gaps = 61/299 (20%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           R       ++ GY+ANG +  A S+F  +P  D  S+N+++     +S   +A  L++ M
Sbjct: 67  RSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM 126

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM---------------GFVE--- 223
                  D  T   ++SS A+ G +++      +A E                G VE   
Sbjct: 127 PVR----DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEAR 182

Query: 224 ---------SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                     V   NAL+  Y + G +  A  +F RM  RDV+SWN M+ GY   G   E
Sbjct: 183 GLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVE 242

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR-------------- 320
           A   F     A    D  T+  ++ G +  G++EE    F  M  R              
Sbjct: 243 ARRLFD----AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQ 298

Query: 321 ----------YNLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
                     +N+ P   +  +  ++  Y +AG LE+A  V +T    D V W  +L +
Sbjct: 299 RRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAA 357



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 32/164 (19%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N  +  + + G +  A  +F+ M +R   ++N+M+ GY  +GR   A S F+ +     +
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNY 101

Query: 289 P---------------------------DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
                                       DS+T+  ++   ++ GLV     YF +     
Sbjct: 102 SYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPE-- 159

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             K  +   G L   Y R G++E+A  + N+ +  D + W  L+
Sbjct: 160 --KDAVSWNGMLA-AYVRNGRVEEARGLFNSRTEWDVISWNALM 200


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 207/563 (36%), Positives = 300/563 (53%), Gaps = 52/563 (9%)

Query: 38  LSYAQLLFNQIQ--NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           L  A L+F  I+  N    +WNS++  F Q   P +A+  +  M    +  P+  T    
Sbjct: 291 LDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGV-HPNAVTMVSV 349

Query: 96  LKAC-------------------ERVKALNKCQELHGFVIRSGY------------ERCV 124
           + AC                   E +  LN C       ++ G             +R V
Sbjct: 350 MSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDV 409

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           V  T ++ GYA       AR +FD+MP +D+ +WN +IS Y Q+    EAL ++  ++  
Sbjct: 410 VSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLT 469

Query: 185 DVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
             G   D  TL+  LS+CA +GA+++G ++H    +     +  +  +L+DMY+K G+++
Sbjct: 470 KSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVE 529

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A  VF  +  +DV  W++MI G  +HGRG+ AI  F  M      P+S+TF  LLC CS
Sbjct: 530 KAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACS 589

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN--TSSPSDPVL 360
           H GLV+EG   F  M   Y + P  KHY C+VD+ GRAG LE+AL+ I     +PS  V 
Sbjct: 590 HSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASV- 648

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           W  LLG+C IH N+E+ E A   L+++E  + G YVLL+ +YA T D EGV+  R+ ++ 
Sbjct: 649 WGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRD 708

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
           +G+K   G S IEI   VH+F+V D +HP +  IY KL+EIM R +  GY  + +L  + 
Sbjct: 709 SGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVAN-TLCMLQ 767

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
               E+  EK+   HSEK+AIAFGL       ++RIVKNLR            S  Y RD
Sbjct: 768 FVEEEEMKEKALKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRD 827

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +++RDR R+HHF  G CSC DYW
Sbjct: 828 IVLRDRYRFHHFSGGHCSCQDYW 850



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 214/445 (48%), Gaps = 49/445 (11%)

Query: 6   HARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
           HA+ +  NK    +      L  + A S  S+L YA+ +F+QI  P   +WN LIRA A 
Sbjct: 159 HAQMLRTNKLHDPYA--ASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALAT 216

Query: 66  SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV 125
           S  P+Q++  +  ML  S   P+ FTF   +KA    +     + +HG  I++ +   V 
Sbjct: 217 SSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVF 276

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V  +L+  YA+ G ++ A  VF+ +    +D+VSWNS+++ + Q  +  +AL L+ERMR 
Sbjct: 277 VLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRN 336

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM----GFVESVYVGNALVDMYAKCG 239
           E V  +  T+V ++S+CA    L +G    R  C+       + ++ V NA +DM+ KCG
Sbjct: 337 EGVHPNAVTMVSVMSACAKTMNLTLG----RKVCDYIDRNEMMMNLNVCNATIDMFVKCG 392

Query: 240 NLDSAFCVFSRMRKRDVLS-------------------------------WNSMIVGYGV 268
            ++ A  +F  M KRDV+S                               WN +I GY  
Sbjct: 393 EVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQ 452

Query: 269 HGRGDEAISFFK--QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
            GR  EA++ F+  Q+  +G  PD +T L  L  C+  G ++ G E+ H  + +  ++  
Sbjct: 453 SGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIG-EWIHGYIKKERIQLN 511

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
                 L+D+Y ++G +EKA+EV ++    D  +W  ++    +H     GE A++  + 
Sbjct: 512 RNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGR---GEAAIELFLD 568

Query: 387 LEAASAGDYVLLATIYACTKDEEGV 411
           ++        +  T   C     G+
Sbjct: 569 MQETQVKPNSVTFTNLLCACSHSGL 593


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 193/529 (36%), Positives = 294/529 (55%), Gaps = 19/529 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++S A+ +F+ I      +W  LI  +AQ+  P +A+     ML A   RP  FTFT  L
Sbjct: 112 AVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARF-RPSGFTFTSFL 170

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           KA          +++H   ++   +  V V + L+  YA    ++ A  VFD +  ++ V
Sbjct: 171 KAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEV 230

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I+ + +       L  +  M+    G   FT   + S+ A +GAL  G ++H   
Sbjct: 231 SWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHM 290

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + G   + +V N ++ MYAK G++  A  VF R+ +RD+++WN+M+  +  +G G EA+
Sbjct: 291 IKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAV 350

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           + F+++   G   + ITFL +L  CSH GLV+EG +YF MM   YN++P I HY   VDL
Sbjct: 351 AHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMM-KDYNVEPEIDHYVSFVDL 409

Query: 337 YGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG L++AL +     P +P   +W  LLG+C++H+N +IG+ A  ++ +L+    G 
Sbjct: 410 LGRAGLLKEAL-IFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGP 468

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
            VLL  IYA T   +  AR RK++K+ G+K  P  SW+EI N VH FV DD +HP ++ I
Sbjct: 469 PVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEI 528

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           YR  EE+  R K  GY  +   V +     E   E    YHSEK+A+AF L   P G ++
Sbjct: 529 YRMWEEVNTRIKKAGYVPNTDYVLLHIKEQER--ETKLQYHSEKIALAFALINMPAGATI 586

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI+KN+R            S  + R+++VRD  R+HHF +G CSCGDYW
Sbjct: 587 RIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 136/288 (47%), Gaps = 3/288 (1%)

Query: 79  MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
           +L+     P    +   + AC + K L   + +H  + RS       +  +L+  Y   G
Sbjct: 52  LLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCG 111

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
            +  AR VFD +P RD+VSW  +I+ Y Q     EAL L   M        GFT    L 
Sbjct: 112 AVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLK 171

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +    G   +G  +H +A +    E VYVG+AL+DMYA+C  +D A  VF  +  ++ +S
Sbjct: 172 AAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVS 231

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV-EYFHMM 317
           WN++I G+   G G+  +  F +M   GF     T+  +    +  G +E+G   + HM+
Sbjct: 232 WNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMI 291

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            S   L   + +   ++ +Y ++G +  A +V +     D V W T+L
Sbjct: 292 KSGQKLTAFVAN--TILGMYAKSGSMVDARKVFDRVDQRDLVTWNTML 337


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 294/529 (55%), Gaps = 19/529 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A+LLF+ +      +WNS+I A+ Q+ +P +A+  +  ML   + +P   +    L
Sbjct: 286 SLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGV-KPTDVSVMGAL 344

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  +  L + + +H   +    +R V V  +L+  Y     ++ A S+F  +  R +V
Sbjct: 345 HACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIV 404

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I  + Q    +EAL  + +M+   V  D FT V ++++ A +   +   ++H + 
Sbjct: 405 SWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVV 464

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                 ++V+V  ALVDMYAKCG +  A  +F  M +R V +WN+MI GYG HG G  A+
Sbjct: 465 MRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAAL 524

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F++M      P+ +TFL ++  CSH GLVE G++ FHMM   Y+++P + HYG +VDL
Sbjct: 525 ELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDL 584

Query: 337 YGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG+L +A + I    P  P   ++  +LG+C+IH+NV   E   + L +L     G 
Sbjct: 585 LGRAGRLNEAWDFI-MQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGY 643

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           +VLLA IY      E V + R  +   G++ TPG S +EI N+VH F     +HP +  I
Sbjct: 644 HVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKI 703

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y  LE+++ + K  GY  D +L+       +D  E+  + HSEKLAI+FGL  T  GT++
Sbjct: 704 YAFLEKLICQIKEAGYVPDTNLIL---GLEDDVKEQLLSSHSEKLAISFGLLNTTAGTTI 760

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + KNLR            S+   R++IVRD  R+HHF++G CSCGDYW
Sbjct: 761 HVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 195/367 (53%), Gaps = 7/367 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+++      +WN+++  ++Q+     A+   N M   +L +P   T    L A  
Sbjct: 189 ARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENL-KPSFITIVSVLPAVS 247

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            ++ +   +E+HG+ +R+G++  V ++T L+  YA  G ++ AR +FD M ER++VSWNS
Sbjct: 248 ALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNS 307

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I  Y Q     EA+ ++++M  E V     +++  L +CA +G L  G F+H+++ E+ 
Sbjct: 308 MIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELE 367

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              +V V N+L+ MY KC  +D+A  +F +++ R ++SWN+MI+G+  +GR  EA+++F 
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFS 427

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QM      PD+ T++ ++   +   +     ++ H +V R  L   +     LVD+Y + 
Sbjct: 428 QMQARTVKPDTFTYVSVITAIAELSITHHA-KWIHGVVMRNCLDKNVFVTTALVDMYAKC 486

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLL 398
           G +  A  + +  S      W  ++     H    IG+ A++   +++  +        L
Sbjct: 487 GAIMIARLIFDMMSERHVTTWNAMIDGYGTH---GIGKAALELFEEMQKGTIRPNGVTFL 543

Query: 399 ATIYACT 405
           + I AC+
Sbjct: 544 SVISACS 550



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 176/354 (49%), Gaps = 7/354 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A  +F  I       + ++++ FA+     +A+ ++  M    +  P  + FT+ L
Sbjct: 84  SVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEV-EPVVYNFTYLL 142

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           K C     L   +E+HG +++SG+   +   T L   YA    +  AR VFD MPERDLV
Sbjct: 143 KVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLV 202

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN+I++ Y+Q      AL++   M  E++     T+V +L + + +  + +G  +H  A
Sbjct: 203 SWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYA 262

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              GF   V +  ALVDMYAKCG+L +A  +F  M +R+V+SWNSMI  Y  +    EA+
Sbjct: 263 MRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAM 322

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F++ML  G  P  ++ +G L  C+  G +E G  + H +     L   +     L+ +
Sbjct: 323 VIFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RFIHKLSVELELDRNVSVVNSLISM 381

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTL-LGSCKIHRNVEIGEIAMKNLVQLEA 389
           Y +  +++ A  +         V W  + LG  +  R +E    A+    Q++A
Sbjct: 382 YCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIE----ALNYFSQMQA 431



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 140/305 (45%), Gaps = 2/305 (0%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
           ER  +L + + +   + ++G  +  +  T L+  +   G ++ A  VF+ + ++  V + 
Sbjct: 45  ERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYY 104

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           +++  + + S   +ALK + RMR ++V    +    LL  C     L +G  +H +  + 
Sbjct: 105 TMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS 164

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           GF   ++    L +MYAKC  +  A  VF RM +RD++SWN+++ GY  +G    A+   
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMV 224

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
             M      P  IT + +L   S   L+  G E  H    R      +     LVD+Y +
Sbjct: 225 NLMCEENLKPSFITIVSVLPAVSALRLIRIGKE-IHGYAMRAGFDSLVNIATALVDMYAK 283

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            G L+ A  + +     + V W +++ +   + N +   +  + ++  E     D  ++ 
Sbjct: 284 CGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLD-EGVKPTDVSVMG 342

Query: 400 TIYAC 404
            ++AC
Sbjct: 343 ALHAC 347


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 183/527 (34%), Positives = 302/527 (57%), Gaps = 22/527 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +      +WN++I  +  +   ++A+  ++ M     ++   FT + TL AC 
Sbjct: 110 ARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREG-TQMTEFTLSSTLCACA 168

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
              A+ +C++LH   I+   +    V T  +  YA   +I+ A  VF+NMPE+  V+W+S
Sbjct: 169 AKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSS 228

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           + + + Q   H E L L++  + E + L  FT+  +LS+CA +  +  G  +H +  + G
Sbjct: 229 LFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHG 288

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F  +++V  +LVD+YAKCG ++ ++ VF+ M +++V+ WN+MI  +  H    EA+  F+
Sbjct: 289 FHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFE 348

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M   G  P+ +T+L +L  CSH GLVEEG  YF++++S    +P + HY C+VD+ GR+
Sbjct: 349 KMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRS 408

Query: 341 GKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           GK ++A ++++   P +P   +W +LLGS +IH+N+ +  IA + L +LE  + G++VLL
Sbjct: 409 GKTDEAWKLLD-KMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLL 467

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + +YA + + E V   RK ++ +G K   G SWIE   ++H FV  ++ HP    +Y KL
Sbjct: 468 SNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKL 527

Query: 459 EEIMHRAKFIGYTKDES--LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
           EEI H  + I +  +    L  V     E+ L+    +HSEKLA AFGL + P    + I
Sbjct: 528 EEIYHEMRKISHRANTQCDLHDVHADQKEELLK----HHSEKLAFAFGLISLPPNIPITI 583

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            KNLR            S    R +IVRD  R+HHF+DG CSCGD+W
Sbjct: 584 YKNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 154/326 (47%), Gaps = 5/326 (1%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D FT    L+ C + ++L   +  HG  I  G     V    L+  Y   G  + AR VF
Sbjct: 55  DVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVF 114

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D M  R ++SWN++I+ YT     +EALKL+ RM  E   +  FTL   L +CA   A+ 
Sbjct: 115 DAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAII 174

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
               LH IA ++    S +VG A +D+YAKC  +  A  VF  M ++  ++W+S+  G+ 
Sbjct: 175 ECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFV 234

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +G  +E +  F+     G      T   +L  C+   L+ EG +  H ++ ++     +
Sbjct: 235 QNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQ-VHAVIVKHGFHRNL 293

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
                LVD+Y + G++EK+ EV       + VLW  ++ S   H +     I  + + Q+
Sbjct: 294 FVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQV 353

Query: 388 EAASAGDYVLLATIYACTKD---EEG 410
                 +   L+ + AC+     EEG
Sbjct: 354 -GIFPNEVTYLSILSACSHTGLVEEG 378



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 82/187 (43%), Gaps = 3/187 (1%)

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           +R E   +D FTL  LL  CA   +L +G   H +A   G V      N L+++Y KCG 
Sbjct: 47  VRVERDLIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQ 106

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD-EAISFFKQMLMAGFHPDSITFLGLLC 299
            D A  VF  M  R ++SWN+MI GY  H R D EA+  F +M   G      T    LC
Sbjct: 107 NDCARRVFDAMSVRSIISWNTMIAGY-THNREDVEALKLFSRMHREGTQMTEFTLSSTLC 165

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
            C+ +  + E  +  H +  +  L          +D+Y +   ++ A  V         V
Sbjct: 166 ACAAKYAIIE-CKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSV 224

Query: 360 LWRTLLG 366
            W +L  
Sbjct: 225 TWSSLFA 231


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 188/527 (35%), Positives = 294/527 (55%), Gaps = 15/527 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF+++      +W ++I  + +   P +A+  +  M  +  S+ + FT +  L 
Sbjct: 152 LQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALA 211

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A   V  L   +E+HG+++R+G +   VV + L   Y   G IE AR +FD M +RD+V+
Sbjct: 212 AAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVT 271

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++I  Y Q     E   L+  +    +  + FT   +L++CA+  +  +G  +H    
Sbjct: 272 WTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMT 331

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            +GF    +  +ALV MY+KCGN+ SA  VF    + D+ SW S+I GY  +G+ DEAI 
Sbjct: 332 RVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIR 391

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
           +F+ ++ +G  PD ITF+G+L  C+H GLV++G++YFH +  +Y L     HY C++DL 
Sbjct: 392 YFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLL 451

Query: 338 GRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            R+G+ ++A  +I+  S   D  LW +LLG C+IH N+++ + A + L ++E  +   YV
Sbjct: 452 ARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYV 511

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
            LA IYA       VA+ RK +   G+   PG SWI I   VH F+V D SHP +  I  
Sbjct: 512 TLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINE 571

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            L ++  R K  G+  D + V       +   E++ +YHSEKLA+AFG+ +TP+GT +++
Sbjct: 572 FLGKLSKRMKEEGFVPDTNFVLHDVEDEQK--EQNLSYHSEKLAVAFGIISTPEGTPIKV 629

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            KNLR            S   +R +IVRD  R+H F DG CSC DYW
Sbjct: 630 FKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 144/319 (45%), Gaps = 33/319 (10%)

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           ++  + +P    ++  +++C + + L + +++H  +  SG+   + +   L+  YA    
Sbjct: 61  ILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDS 120

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM------------------ 181
           +  ++ +FD MPERDL SWN +IS Y +     EA  L+++M                  
Sbjct: 121 LMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRH 180

Query: 182 --------------RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227
                         R ++   + FT+   L++ A V  L +G  +H      G      V
Sbjct: 181 DRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVV 240

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
            +AL DMY KCG+++ A  +F +M  RD+++W +MI  Y   GR  E    F  +L +G 
Sbjct: 241 WSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGI 300

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            P+  TF G+L  C++Q   E G +  H  ++R    P       LV +Y + G +  A 
Sbjct: 301 RPNEFTFSGVLNACANQTSEELG-KKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAE 359

Query: 348 EVINTSSPSDPVLWRTLLG 366
            V   +   D   W +L+ 
Sbjct: 360 RVFKETPQPDLFSWTSLIA 378


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 198/559 (35%), Positives = 314/559 (56%), Gaps = 48/559 (8%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++ YA  +F    NP    + +LI  F  S +   AI  Y+ ML  S+  PD +     L
Sbjct: 96  AIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSI-LPDNYLMASIL 154

Query: 97  KACERVKALNKCQELHGFVIRSG--------------YERC----------------VVV 126
           KAC    AL + +E+H   ++ G              Y +C                VV 
Sbjct: 155 KACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVA 214

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
           ST ++  Y+  G++E A +VF  +  +D V W ++I  + +      AL+ +  M+ E+V
Sbjct: 215 STVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENV 274

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             + FT+VC+LS+C+ +GAL +G ++H    +     +++VGNAL++MY++CG++D A  
Sbjct: 275 RPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQT 334

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF  M+ RDV+++N+MI G  ++G+  +AI  F+ M+     P ++TF+G+L  CSH GL
Sbjct: 335 VFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGL 394

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLL 365
           V+ G + FH M   Y ++P I+HYGC+VDL GR G+LE+A ++I T     D ++  TLL
Sbjct: 395 VDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLL 454

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
            +CK+H+N+E+GE   K L     A +G YVLL+ +YA +   +  A+ R  +K  G++ 
Sbjct: 455 SACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQK 514

Query: 426 TPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSE 485
            PG S IE+ N++H+F++ D  HP  + IY KLEE+    +  GY  ++ +V       E
Sbjct: 515 EPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGE 574

Query: 486 DFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIAYS-------------RDLIVR 532
              E + A HSE+LAI +GL +T   T +R++KNLR + Y              R ++VR
Sbjct: 575 K--EWALAIHSERLAICYGLISTEPCTVIRVMKNLR-VCYDCHSAIKLIAKITRRKVVVR 631

Query: 533 DRVRYHHFRDGLCSCGDYW 551
           DR R+H+F +G CSCGDYW
Sbjct: 632 DRNRFHYFENGACSCGDYW 650



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 135/296 (45%), Gaps = 31/296 (10%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
           +R K +N+   +H  +IR+G+ +   +   L+R  +    I+ A  +F      ++  + 
Sbjct: 57  QRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYT 116

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++I  +  +  + +A++LY RM  + +  D + +  +L +C    AL  G  +H  A ++
Sbjct: 117 ALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKL 176

Query: 220 GFVESVYVGNALVDMYAKCGNL------------------------------DSAFCVFS 249
           G   +  V   ++++Y KCG L                              + A  VFS
Sbjct: 177 GLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFS 236

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
           R+R++D + W +MI G+  +   + A+  F+ M      P+  T + +L  CS  G +E 
Sbjct: 237 RVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEI 296

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           G  + H  + ++ ++  +     L+++Y R G +++A  V +     D + + T++
Sbjct: 297 G-RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMI 351


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 195/542 (35%), Positives = 307/542 (56%), Gaps = 25/542 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF-AQSLSPLQAIFYYNHMLMASL 84
           L+N YA     S +YA  +F +I      +W +LI  F A+       IF  N ML    
Sbjct: 232 LVNVYA--KCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIF--NQMLAEGF 287

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
           + P+ +TF   L++C  +  ++  +++H  ++++  +    V T L+  YA N  +E A 
Sbjct: 288 N-PNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAE 346

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           ++F+ + +RDL +W  I++ Y Q     +A+K + +M+ E V  + FTL   LS C+ + 
Sbjct: 347 TIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIA 406

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
            L+ G  LH +A + G    ++V +ALVDMYAKCG ++ A  VF  +  RD +SWN++I 
Sbjct: 407 TLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIIC 466

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GY  HG+G +A+  F+ ML  G  PD +TF+G+L  CSH GL+EEG ++F+ +   Y + 
Sbjct: 467 GYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGIT 526

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
           P I+HY C+VD+ GRAGK  +    I      S+ ++W T+LG+CK+H N+E GE A   
Sbjct: 527 PTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMK 586

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           L +LE     +Y+LL+ ++A     + V   R L+ + G+K  PG SW+E+  QVH F+ 
Sbjct: 587 LFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLS 646

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTK--DESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
            D SHP    I+ KL+++  +   +GYT   D  L  VS    ++ L     YHSE+LA+
Sbjct: 647 HDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELL----FYHSERLAL 702

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           AF L +T    ++RI KNLR            S   +++L+VRD   +HHF++G CSC +
Sbjct: 703 AFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQN 762

Query: 550 YW 551
           +W
Sbjct: 763 FW 764



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 172/372 (46%), Gaps = 8/372 (2%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A+ +  ++     Q WN  + + A S  PLQ      +++  +  R + F F   +
Sbjct: 39  SLQCARQVLEEMPIQDVQQWNQKLSS-ANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLI 97

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            A   +   +  + +H  V + G+E  +++S   +  Y     +E     F  M   +L 
Sbjct: 98  SAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLA 157

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           S N+++S +       +  ++  ++  E    + +T + +L +CA  G LN G  +H   
Sbjct: 158 SRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQV 217

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + G     ++ N+LV++YAKCG+ + A  VF  + +RDV+SW ++I G+   G G   +
Sbjct: 218 IKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGS-GL 276

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F QML  GF+P+  TF+ +L  CS    V+ G +  H  + + +L         LVD+
Sbjct: 277 RIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQ-VHAQIVKNSLDGNDFVGTALVDM 335

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASAGD 394
           Y +   LE A  + N     D   W  ++     +     GE A+K  +Q+  E     +
Sbjct: 336 YAKNRFLEDAETIFNRLIKRDLFAWTVIVAG---YAQDGQGEKAVKCFIQMQREGVKPNE 392

Query: 395 YVLLATIYACTK 406
           + L +++  C++
Sbjct: 393 FTLASSLSGCSR 404



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 1/238 (0%)

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           ++L+  Y     ++ AR V + MP +D+  WN  +S         EA++L+  MR   + 
Sbjct: 28  SSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIR 87

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
           L+ F    L+S+ A +G  + G  +H   C+ GF   + + NA V MY K  ++++ +  
Sbjct: 88  LNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQF 147

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F  M   ++ S N+++ G+      D+      Q+L+ GF P+  TF+ +L  C+ +G +
Sbjct: 148 FKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDL 207

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            EG +  H  V +  + P    +  LV++Y + G    A +V       D V W  L+
Sbjct: 208 NEG-KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALI 264



 Score = 42.0 bits (97), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 82/212 (38%), Gaps = 21/212 (9%)

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G     ++ ++LV++Y KC +L  A  V   M  +DV  WN  +          EA+  F
Sbjct: 19  GICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLF 78

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
             M       +   F  L+   +  G    G E  H  V +Y  +  I      V +Y +
Sbjct: 79  YLMRHTRIRLNQFIFASLISAAASLGDNHYG-ESIHACVCKYGFESDILISNAFVTMYMK 137

Query: 340 AGKLE------KALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAAS 391
              +E      KA+ + N +S ++      L G C    + E  +   + L+QL  E   
Sbjct: 138 TQSVENGWQFFKAMMIENLASRNN-----LLSGFC----DTETCDQGPRILIQLLVEGFE 188

Query: 392 AGDYVLLATIYACTKD---EEGVARTRKLIKS 420
              Y  ++ +  C       EG A   ++IKS
Sbjct: 189 PNMYTFISILKTCASKGDLNEGKAIHGQVIKS 220


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 199/539 (36%), Positives = 293/539 (54%), Gaps = 19/539 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ Y  S    L+ A  +F ++      +W S+I  + +      AI  ++ M    + 
Sbjct: 394 LLDMY--SKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVV 451

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD +  T  L AC     L   + +H ++  +  E    VS  L   YA  G ++ A  
Sbjct: 452 -PDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHD 510

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF +M ++D++SWN++I  YT+ S   EAL L+  M+ E    DG T+ C+L +CA + A
Sbjct: 511 VFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKP-DGTTVACILPACASLAA 569

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L+ G  +H  A   G+ E  YV NA+VDMY KCG L  A  +F  +  +D++SW  MI G
Sbjct: 570 LDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAG 629

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           YG+HG G EAI+ F QM M G  PD ++F+ +L  CSH GL++EG + F++M     ++P
Sbjct: 630 YGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEP 689

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            ++HY C+VDL  R G L KA + I       D  +W  LL  C+IH +V++ E   + +
Sbjct: 690 NLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERI 749

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
            +LE  + G YVLLA IYA  +  E V + RK I   G+K  PG SWIEI  +++ FV  
Sbjct: 750 FELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAG 809

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D S P A  I   L+ +  + K  GY+   +   ++    E   E +   HSEKLA+AFG
Sbjct: 810 DCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREK--EVALCGHSEKLAMAFG 867

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +   P G ++R+ KNLR            S + SR++I+RD  R+HHF+DG CSC  YW
Sbjct: 868 MLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 174/330 (52%), Gaps = 3/330 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L   +++F+++   +   WN +I  ++ S +  ++I  +  ML   + +P+++TF+  LK
Sbjct: 201 LKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGI-KPNSYTFSSILK 259

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
               V  + + +++HG + + G+     V  +L+  Y     +  A+ +FD + +RD++S
Sbjct: 260 CFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVIS 319

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNS+IS Y +       ++++ +M    V +D  T+V +  +CA++G L +G  LH  + 
Sbjct: 320 WNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSI 379

Query: 218 EMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
           +   ++  V   N L+DMY+KCG+L+SA  VF RM ++ V+SW SMI GY   G  D AI
Sbjct: 380 KAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAI 439

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F +M   G  PD      +L  C+  G ++ G +  H  +   NL+        L D+
Sbjct: 440 KLFDEMKSRGVVPDVYAVTSILNACAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDM 498

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           Y + G ++ A +V +     D + W T++G
Sbjct: 499 YAKCGSMKDAHDVFSHMKKKDVISWNTMIG 528



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 201/419 (47%), Gaps = 26/419 (6%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSY---------AQLLFNQIQNPQT 53
           LK  A    + + RQ H +  +   NSY   V+S +S+         AQ LF+++ +   
Sbjct: 258 LKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDV 317

Query: 54  QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
            +WNS+I  + ++    + I  +  ML+  +   D  T      AC  +  L   + LH 
Sbjct: 318 ISWNSMISGYVKNGLDDRGIEIFIKMLVFGVD-IDLATMVNVFVACANIGTLLLGKVLHS 376

Query: 114 FVIRSG-YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
           + I++   +R V  +  L+  Y+  G + +A  VF+ M E+ +VSW S+I+ Y +     
Sbjct: 377 YSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSD 436

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
            A+KL++ M+   V  D + +  +L++CA  G L  G  +H    E     + +V NAL 
Sbjct: 437 GAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALT 496

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           DMYAKCG++  A  VFS M+K+DV+SWN+MI GY  +   +EA++ F +M      PD  
Sbjct: 497 DMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGT 555

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH----YGCLVDLYGRAGKLEKALE 348
           T   +L  C+    +++G E     +  Y L+ G          +VD+Y + G L  A  
Sbjct: 556 TVACILPACASLAALDKGRE-----IHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARS 610

Query: 349 VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIYACT 405
           + +     D V W  ++    +H     G  A+   N +++      +   ++ +YAC+
Sbjct: 611 LFDMIPNKDLVSWTVMIAGYGMH---GYGSEAINTFNQMRMTGIEPDEVSFISILYACS 666



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 141/317 (44%), Gaps = 1/317 (0%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D   +   L+ C   K++   + +   +  SG     ++   L+  Y   G ++  R VF
Sbjct: 149 DLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVF 208

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D + E  +  WN +IS Y+ +  + E++ L+++M    +  + +T   +L   A V  + 
Sbjct: 209 DKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVE 268

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  +H + C++GF     V N+L+  Y     +  A  +F  +  RDV+SWNSMI GY 
Sbjct: 269 EGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYV 328

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +G  D  I  F +ML+ G   D  T + +   C++ G +  G       +    L   +
Sbjct: 329 KNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREV 388

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
           +    L+D+Y + G L  A+ V         V W +++ +  +   +  G I + + ++ 
Sbjct: 389 RFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMI-TGYVREGLSDGAIKLFDEMKS 447

Query: 388 EAASAGDYVLLATIYAC 404
                  Y + + + AC
Sbjct: 448 RGVVPDVYAVTSILNAC 464


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 195/531 (36%), Positives = 297/531 (55%), Gaps = 20/531 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A+ +F+ +      +W ++I A++Q     QA+  +  ML +  + P+ FTF   L
Sbjct: 108 SLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSG-TEPNEFTFATVL 166

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            +C         +++H  +I+  YE  V V ++L+  YA +G I  AR +F  +PERD+V
Sbjct: 167 TSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVV 226

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           S  +IIS Y Q     EAL+L+ R++ E +  +  T   +L++ + + AL+ G  +H   
Sbjct: 227 SCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHL 286

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                   V + N+L+DMY+KCGNL  A  +F  + +R V+SWN+M+VGY  HG G E +
Sbjct: 287 LRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVL 346

Query: 277 SFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS-RYNLKPGIKHYGCLV 334
             F  M+      PDS+T L +L GCSH GL ++G++ F+ M S + +++P  KHYGC+V
Sbjct: 347 ELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVV 406

Query: 335 DLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           D+ GRAG++E A E +    P +P   +W  LLG+C +H N++IGE     L+Q+E  +A
Sbjct: 407 DMLGRAGRVEAAFEFVK-KMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENA 465

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
           G+YV+L+ +YA     E V   R L+    +   PG SWIE+   +H F   D SHP  +
Sbjct: 466 GNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRRE 525

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            +  K++E+  R K  GY  D  L  V     E+  EK    HSEKLA+ FGL  TP+  
Sbjct: 526 EVSAKVQELSARFKEAGYVPD--LSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPESV 583

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +R++KNLR            S  Y R++ +RD+ R+H    G CSCGDYW
Sbjct: 584 PIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 158/316 (50%), Gaps = 5/316 (1%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           +   L  C R +A+ + Q +H  +I++ Y  CV + T L+  Y     +  AR VFD MP
Sbjct: 61  YNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMP 120

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           ER++VSW ++IS Y+Q  +  +AL L+ +M       + FT   +L+SC       +G  
Sbjct: 121 ERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQ 180

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H    ++ +   VYVG++L+DMYAK G +  A  +F  + +RDV+S  ++I GY   G 
Sbjct: 181 IHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGL 240

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
            +EA+  F+++   G   + +T+  +L   S    ++ G +  H  + R  +   +    
Sbjct: 241 DEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQ-VHNHLLRSEVPSYVVLQN 299

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQLEAA 390
            L+D+Y + G L  A  + +T      + W  +L G  K     E+ E+   NL+  E  
Sbjct: 300 SLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELF--NLMIDENK 357

Query: 391 SAGDYV-LLATIYACT 405
              D V +LA +  C+
Sbjct: 358 VKPDSVTVLAVLSGCS 373


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 187/489 (38%), Positives = 278/489 (56%), Gaps = 19/489 (3%)

Query: 78  HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
           H + A   R D +T    L +   ++       LH  ++R+G    + V+  L+  YA  
Sbjct: 30  HEMRARGHRADEYTLPPALNSAALLRL--PADALHSLLLRAGLAAHLHVANALVDAYAKL 87

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
               AAR+VFD MP RD+VSW S+++   ++  H  AL++Y  M    VG D F +   L
Sbjct: 88  SRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDSALQVYRDMVAAGVGPDEFAVAAAL 147

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF--SRMRKRD 255
           SSCA   AL +G  +H  A  +     + VGN+LV MYAK G+L  A  VF  +R+ + D
Sbjct: 148 SSCAGATALELGRSVHAAAVRLALDPFLSVGNSLVSMYAKTGSLGEAKKVFDATRVDRCD 207

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
            ++W ++IVGY  +GRG E++  +  M+ +G  PD +TF+GLL  CSH GLV+ G  +F 
Sbjct: 208 PITWTALIVGYAQNGRGRESLEIYADMVRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFR 267

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNV 374
            M + + + PG  HY C+VDL GRAG+L++A++++N S+   D  +W+ LL +C+ HRN 
Sbjct: 268 SMQAEHGIAPGADHYACMVDLLGRAGRLDEAMDLLNRSTTRLDATVWKALLAACRTHRNA 327

Query: 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEI 434
           E+ E A   + +L+   A  YV+L+ +Y+       VAR R  +K+ GI   PG SW+  
Sbjct: 328 ELAEHAAAMVWRLDPTDAVPYVMLSNLYSRAGRWGDVARVRTSMKARGITKEPGCSWVAA 387

Query: 435 GNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY 494
               H F V+D+ HP A  +YRK+EE+  R +  GY  D +  A+     E   EK  A+
Sbjct: 388 NGVTHLFYVEDRRHPRAAEVYRKVEEMTERIRGQGYVADTAW-ALQDEGPEG-REKGLAH 445

Query: 495 HSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRD 542
           HSE+LA+AFGL   P G  +R+ KNLR            + AY R++++RD   +HH +D
Sbjct: 446 HSERLAVAFGLLAVPAGAPIRVFKNLRVCGDCHAAIKMVAQAYGREIVLRDSNCFHHMKD 505

Query: 543 GLCSCGDYW 551
           G CSCGDYW
Sbjct: 506 GACSCGDYW 514


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 191/534 (35%), Positives = 298/534 (55%), Gaps = 29/534 (5%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPL------QAIFYYNHMLMASLSRPDTF 90
           +L  A  LF  +Q P    +N++I  F ++ + +      +A+  Y+ +    + +P  F
Sbjct: 262 ALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGM-QPTEF 320

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           TF+  L+AC     L   +++HG VI+  ++    + + L+  Y  +G +E     F + 
Sbjct: 321 TFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSS 380

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           P+ D+V+W +++S   Q   H +AL L+       +  D FT+  ++++CA +     G 
Sbjct: 381 PKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGE 440

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +   A + GF     +GN+ V MYA+ G++D+A   F  M   DV+SW+++I  +  HG
Sbjct: 441 QIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHG 500

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
              +A+ FF +M+ A   P+ ITFLG+L  CSH GLV+EG+ Y+  M   Y L P IKH 
Sbjct: 501 CARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHC 560

Query: 331 GCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
            C+VDL GRAG+L  A   I N+   +DPV+WR+LL SC+IHR++E G++    +++LE 
Sbjct: 561 TCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEP 620

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
            S+  YV+L  +Y    +    ++TR L+K  G+K  PG SWIE+   VH FV  DKSHP
Sbjct: 621 TSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHP 680

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
           ++  IY KLEE++ R + +  T  E       S  E  L      HSEKLA+A G+   P
Sbjct: 681 ESSAIYTKLEEMLSRIEKLATTDTEI------SKREQNLMNC---HSEKLAVALGMIHLP 731

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               +R++KNLR            S + +R++I+RD +R+HHFRDG CSC DYW
Sbjct: 732 QSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHFRDGSCSCADYW 785



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 166/344 (48%), Gaps = 26/344 (7%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFA-QSLSPLQAIFYYNHMLMASLSRP-------DTFTF 92
           A+ L +++      ++N LI A++ + L+PL          + +L+R        D F++
Sbjct: 62  ARRLLDEMPRRNAVSFNLLIDAYSREGLAPLS---------LETLARARRAGVDVDRFSY 112

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              L AC R   L   + +H   I  G    V VS +L+  Y+  G +  AR VFD   E
Sbjct: 113 AAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEE 172

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-- 210
           RD VSWNS++S Y +A    E ++++  MR   +GL+ F L  ++  C+  G   M I  
Sbjct: 173 RDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAE 232

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY---- 266
            +H    + G    V++ +A++DMYAK G L  A  +F  +++ +V+ +N+MI G+    
Sbjct: 233 AVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTE 292

Query: 267 GVHGR--GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
            V G+    EA++ + ++   G  P   TF  +L  C+  G +E G +  H  V +Y  +
Sbjct: 293 TVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFG-KQIHGQVIKYTFQ 351

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
                   L+DLY  +G +E       +S   D V W  ++  C
Sbjct: 352 EDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGC 395



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 131/284 (46%), Gaps = 6/284 (2%)

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
             L+  Y   G    AR + D MP R+ VS+N +I  Y++      +L+   R R   V 
Sbjct: 47  NTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVD 106

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
           +D F+    L++C+  G L  G  +H +A   G    V+V N+LV MY+KCG +  A  V
Sbjct: 107 VDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRV 166

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL- 306
           F    +RD +SWNS++ GY   G  +E +  F  M   G   +S     ++  CS +G  
Sbjct: 167 FDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDG 226

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL- 365
             +  E  H  V +  L   +     ++D+Y + G L +A  +  +    + V++ T++ 
Sbjct: 227 TMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIA 286

Query: 366 GSCK----IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           G C+    I + V    + + + VQ       ++   + + AC 
Sbjct: 287 GFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACN 330


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 199/593 (33%), Positives = 312/593 (52%), Gaps = 50/593 (8%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLNSYAISVSS-----SLSYAQLLFNQIQNPQTQAWN 57
           L  + R   + +AR       EW + S+   +S       +S A+ LF+++      +WN
Sbjct: 44  LAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWN 103

Query: 58  SLIRAFAQ-----------SLSPLQAIFYY---------NHML------MASLSRPDTFT 91
            ++  +A+             +P++ +F +         N ML        ++   +  +
Sbjct: 104 IMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS 163

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           +   + A  + + +++ +EL   +      R V     ++ GYA  G++E A++VFD MP
Sbjct: 164 WNAMVAAYIQRRMMDEAKELFNMMPC----RNVASWNTMLTGYAQAGMLEEAKAVFDTMP 219

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           ++D VSW ++++ Y+Q     E L+L+  M      ++     C+LS+CA + AL  G+ 
Sbjct: 220 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 279

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           LH      G+    +VGNAL+ MY KCGN++ A   F  M +RDV+SWN+MI GY  HG 
Sbjct: 280 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 339

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           G EA+  F  M      PD IT +G+L  CSH GLVE+G+ YF+ M   + +    +HY 
Sbjct: 340 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYT 399

Query: 332 CLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           C++DL GRAG+L +A +++ +     D  +W  LLG+ +IHRN E+G  A + + +LE  
Sbjct: 400 CMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPE 459

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           +AG YVLL+ IYA +       + R +++  G+K  PG+SWIE+ N+VH F   D  HP+
Sbjct: 460 NAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPE 519

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
            + IY  LE++  R K  GY     +V       E   E    YHSEKLA+A+G+   P 
Sbjct: 520 KEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEK--EHMLKYHSEKLAVAYGILNIPP 577

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G  +R++KNLR            S    R +++RD  R+HHFR G CSCGDYW
Sbjct: 578 GRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 144/366 (39%), Gaps = 63/366 (17%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           E+  V    ++  Y  NG +E AR +F++  E D++SWN+++S Y Q     EA +L++R
Sbjct: 34  EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDR 93

Query: 181 MRFEDV---------------------------GLDGFTLVCLLSSCAHVGALN------ 207
           M   DV                             D FT   ++S  A  G L       
Sbjct: 94  MPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF 153

Query: 208 --------------MGIFLHRIACE-------MGFVESVYVGNALVDMYAKCGNLDSAFC 246
                         +  ++ R   +       M    +V   N ++  YA+ G L+ A  
Sbjct: 154 DAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKA 213

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF  M ++D +SW +M+  Y   G  +E +  F +M   G   +   F  +L  C+    
Sbjct: 214 VFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 273

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           +E G++  H  + R     G      L+ +Y + G +E A          D V W T++ 
Sbjct: 274 LECGMQ-LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIA 332

Query: 367 SCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSN 421
               H     G+ A++  ++++  +    D  L+  + AC+     E+G++    +    
Sbjct: 333 GYARH---GFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDF 389

Query: 422 GIKTTP 427
           G+   P
Sbjct: 390 GVTAKP 395



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 18/243 (7%)

Query: 126 VSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           V+ N+M   +A +G++  AR  FD  PE+D VSWN +++ Y +     EA  L+      
Sbjct: 7   VTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW 66

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
           DV     +   L+S     G ++      R   +      V   N +V  YA+ G++  A
Sbjct: 67  DV----ISWNALMSGYVQWGKMSEA----RELFDRMPGRDVVSWNIMVSGYARRGDMVEA 118

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             +F     RDV +W +++ GY  +G  +EA   F  M       +++++  ++     +
Sbjct: 119 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP----ERNAVSWNAMVAAYIQR 174

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364
            +++E  E F+MM  R      +  +  ++  Y +AG LE+A  V +T    D V W  +
Sbjct: 175 RMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAM 229

Query: 365 LGS 367
           L +
Sbjct: 230 LAA 232


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 185/543 (34%), Positives = 317/543 (58%), Gaps = 22/543 (4%)

Query: 26  LLNSYAISVSS-SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMAS 83
           L++ YA  V+  S+  A+ +F+++      +W ++I  + QS     +AI  +  M+   
Sbjct: 186 LVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQ 245

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
           + +P+ FTF+  LKAC  +  +   ++++  V++        V  +L+  Y+  G +E A
Sbjct: 246 V-KPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENA 304

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           R  FD + E++LVS+N+I++ Y ++    EA +L+  +     G++ FT   LLS  + +
Sbjct: 305 RKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSI 364

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           GA+  G  +H    + GF  ++++ NAL+ MY++CGN+++AF VF+ M   +V+SW SMI
Sbjct: 365 GAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMI 424

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            G+  HG    A+  F +ML AG  P+ +T++ +L  CSH GL+ EG+++F  M   + +
Sbjct: 425 TGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGI 484

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
            P ++HY C+VDL GR+G LE+A+E++N+    +D ++ RT LG+C++H N+++G+ A +
Sbjct: 485 VPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAE 544

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            +++ +      Y+LL+ ++A     E VA  RK +K   +    G SWIE+ N+VHKF 
Sbjct: 545 MILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFY 604

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           V D SHP A  IY +L+++  + K +GY  + D  L  V     E +L +    HSEK+A
Sbjct: 605 VGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQ----HSEKIA 660

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           +A+G  +T     +R+ KNLR            SI   +++++RD  R+HHF+DG CSC 
Sbjct: 661 VAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCN 720

Query: 549 DYW 551
           DYW
Sbjct: 721 DYW 723



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 178/349 (51%), Gaps = 19/349 (5%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W++LI  +A +    +AI  +  ML      P+ + FT   +AC   + ++  + + GF
Sbjct: 9   SWSALISCYANNEKAFEAISAFFDMLECGF-YPNEYCFTGVFRACSNKENISLGKIIFGF 67

Query: 115 VIRSGY-ERCVVVSTNLMRGYA-ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
           ++++GY E  V V   L+  +   NG +E+A  VFD MP+R++V+W  +I+ + Q  F  
Sbjct: 68  LLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSR 127

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           +A+ L+  M       D FTL  ++S+CA +G L++G   H +  + G    V VG +LV
Sbjct: 128 DAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLV 187

Query: 233 DMYAKC---GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD-EAISFFKQMLMAGFH 288
           DMYAKC   G++D A  VF RM   +V+SW ++I GY   G  D EAI  F +M+     
Sbjct: 188 DMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVK 247

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC----LVDLYGRAGKLE 344
           P+  TF  +L  C++   +  G + + ++V     K  +    C    L+ +Y R G +E
Sbjct: 248 PNHFTFSSVLKACANLSDIWLGEQVYALVV-----KMRLASINCVGNSLISMYSRCGNME 302

Query: 345 KALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
            A +  +     + V + T++ +     N    E A +   ++E A  G
Sbjct: 303 NARKAFDVLFEKNLVSYNTIVNAYAKSLN---SEEAFELFNEIEGAGTG 348



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           +RDLVSW+++ISCY       EA+  +  M       + +    +  +C++   +++G  
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 212 LHRIACEMGFVES-VYVGNALVDMYAKC-GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
           +     + G+ ES V VG AL+DM+ K  G+L+SA+ VF RM  R+V++W  MI  +   
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G   +A+  F  M+++G+ PD  T  G++  C+  GL+  G + FH +V +  L   +  
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDVCV 182

Query: 330 YGCLVDLYGRA---GKLEKALEVINTSSPSDPVLWRTLL 365
              LVD+Y +    G ++ A +V +     + + W  ++
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAII 221


>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
 gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
          Length = 568

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 199/511 (38%), Positives = 299/511 (58%), Gaps = 13/511 (2%)

Query: 17  QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQI-QNPQTQAWNSLIRAFAQSLSPLQAIFY 75
            AH +  + LL   A   +  L YA  +  ++  +P   + N+++R  A S  P  A+  
Sbjct: 49  PAHPLLAKHLLFHLASLRAPPLRYAVAVLTRVLPDPDPFSLNTVLRIAASSSRPSLALAL 108

Query: 76  YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
           +       L+ PDT T+   L+AC R+ +L   + +H    ++G    V V  +L+  Y 
Sbjct: 109 HAR----RLAPPDTHTYPPLLQACARLLSLRHGERIHAEAAKNGLATLVFVKNSLVHLYG 164

Query: 136 ANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           A G+ E+A  VFD +P  ER+LVSWNS+++ +       E L ++  M   +   DGFT+
Sbjct: 165 ACGLFESAHRVFDEIPVGERNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTV 224

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-R 252
           V +L++ A +GAL +G  +H    ++G VE+ +VGNAL+D+YAKCG ++ A  VF  M  
Sbjct: 225 VSVLTASAEIGALALGRRVHVYLTKVGLVENSHVGNALIDLYAKCGGVEDARRVFEEMGA 284

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           +R V+SW S+IVG  V+G G EA+  F  M      P  IT +G+L  CSH GLV++G  
Sbjct: 285 RRTVVSWTSLIVGLAVNGFGKEALELFGIMEREKLVPTEITMVGVLYACSHCGLVDDGFM 344

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKI 370
           YF+ M   YN+ P I+H GC+VDL GRAGK+++A + I T  P +P  V+WRTLLG+C +
Sbjct: 345 YFNRMKEEYNIAPRIEHLGCMVDLLGRAGKVKEAYDYILTM-PLEPNAVVWRTLLGACAM 403

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS 430
           H+ +E+GE A   LV+L+   +GDYVLL+ +YA       V   RK +  +G++  PG S
Sbjct: 404 HKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADVHVLRKTMVKDGVRKNPGRS 463

Query: 431 WIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEK 490
            +E+ N V++FV+ D+SHP+++ IY+ L E+    +  GY    S   V     E+  E 
Sbjct: 464 LVELRNSVYEFVMGDRSHPESEQIYQMLAEVADSLRREGYIPRTS--NVLADIEEEEKET 521

Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
           +  YHSE+LAIAF L  +  GT +RIVKNLR
Sbjct: 522 ALNYHSERLAIAFALLKSLPGTPIRIVKNLR 552


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 206/566 (36%), Positives = 316/566 (55%), Gaps = 26/566 (4%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           M +  +A   GL+   Q     G  L++ YA     S+ Y   +F+++ +    +W ++I
Sbjct: 439 MQIHAYAMKNGLDSDLQV----GNSLVDMYA--KFCSMKYMDCIFDKMPDKDVVSWTTII 492

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
              AQ+ S  +A+  +  + +  +   D    +  L AC  +K ++  +E+H ++IR G 
Sbjct: 493 AGHAQNGSHSRALELFREVQLEGIDL-DVMMISSILLACSGLKLISSVKEIHSYIIRKGL 551

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
              +V+   ++  Y   G ++ A  +F+ +  +D+VSW S+ISCY       EAL+L+  
Sbjct: 552 SD-LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHL 610

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M+   V  D  +LV +LS+ A + AL  G  +H      GFV    + + LVDMYA+CG 
Sbjct: 611 MKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGT 670

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           L+ +  VF+ +R +D++ W SMI  YG+HG G  AI  F++M      PD I F+ +L  
Sbjct: 671 LEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYA 730

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN--TSSPSDP 358
           CSH GL+ EG  +   M   Y L+P  +HY CLVDL GRA  LE+A + +      P+  
Sbjct: 731 CSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAE 790

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
           V W  LLG+C+IH N E+GEIA + L++++  + G+YVL++ +YA  +  + V   R  +
Sbjct: 791 V-WCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRM 849

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHR-AKFIGYTKDESLV 477
           K++G+K  PG SWIE+GN+VH F+  DKSHP +  IY KL +I  + AK  GY      V
Sbjct: 850 KASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFV 909

Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
             +    E    +    HSE+LAIA+G+ TTP+G SLRI KNLR            S  +
Sbjct: 910 LHNAKEEEKV--QMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFF 967

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R+L++RD  R+HHF+ G+CSCGD W
Sbjct: 968 ERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 175/359 (48%), Gaps = 11/359 (3%)

Query: 17  QAHEIHGEWLLNSYAISVSSSLSY--------AQLLFNQIQNPQTQAWNSLIRAFAQSLS 68
            AH I    L NS  +S      Y        A+ LF+ + +     WN++I A+  +  
Sbjct: 137 HAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGE 196

Query: 69  PLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVST 128
           PL ++  Y  M ++ +   D  TF   LKAC  +K      E+HG  I+ GY   V V+ 
Sbjct: 197 PLGSLELYREMRVSGIPL-DACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVAN 255

Query: 129 NLMRGYAANGVIEAARSVFDNMPER-DLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           +++  Y     +  AR +FD MPE+ D+VSWNS+IS Y+     +EAL+L+  M+   + 
Sbjct: 256 SIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLA 315

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
            + +T V  L +C     +  G+F+H    +  +  +V+V NAL+ MYA+ G +  A  +
Sbjct: 316 PNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANI 375

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F  M   D +SWNSM+ G+  +G   EA+ F+ +M  AG  PD +  + ++   +  G  
Sbjct: 376 FYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNT 435

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
             G++  H    +  L   ++    LVD+Y +   ++    + +     D V W T++ 
Sbjct: 436 LNGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIA 493



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 192/367 (52%), Gaps = 6/367 (1%)

Query: 36  SSLSYAQLLFNQI-QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           + L+ A+ LF+++ +     +WNS+I A++ +   ++A+  +  M  ASL+ P+T+TF  
Sbjct: 265 NDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLA-PNTYTFVA 323

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L+ACE    + +   +H  V++S Y   V V+  L+  YA  G +  A ++F NM + D
Sbjct: 324 ALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWD 383

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            +SWNS++S + Q   + EAL+ Y  MR      D   ++ ++++ A  G    G+ +H 
Sbjct: 384 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHA 443

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            A + G    + VGN+LVDMYAK  ++    C+F +M  +DV+SW ++I G+  +G    
Sbjct: 444 YAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSR 503

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F+++ + G   D +    +L  CS   L+   V+  H  + R  L   +   G +V
Sbjct: 504 ALELFREVQLEGIDLDVMMISSILLACSGLKLI-SSVKEIHSYIIRKGLSDLVLQNG-IV 561

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           D+YG  G ++ A  +       D V W +++ SC +H  +    + + +L++ E     D
Sbjct: 562 DVYGECGNVDYAARMFELIEFKDVVSWTSMI-SCYVHNGLANEALELFHLMK-ETGVEPD 619

Query: 395 YVLLATI 401
            + L +I
Sbjct: 620 SISLVSI 626



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 147/285 (51%), Gaps = 7/285 (2%)

Query: 87  PDTFT----FTFTLKACERVKALNKCQELHGFVIRS-GYERCVVVSTNLMRGYAANGVIE 141
           P  F+    ++  L+ C   KAL++ Q++H  +I S      V +ST L+  Y   G + 
Sbjct: 108 PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 167

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            A  +FD MP + + +WN++I  Y      L +L+LY  MR   + LD  T  C+L +C 
Sbjct: 168 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 227

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDVLSWN 260
            +     G  +H +A + G+V  V+V N++V MY KC +L+ A  +F RM  K DV+SWN
Sbjct: 228 LLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWN 287

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           SMI  Y  +G+  EA+  F +M  A   P++ TF+  L  C     +++G+ + H  V +
Sbjct: 288 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGM-FIHATVLK 346

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +    +     L+ +Y R GK+ +A  +       D + W ++L
Sbjct: 347 SSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSML 391


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 198/567 (34%), Positives = 310/567 (54%), Gaps = 48/567 (8%)

Query: 14  KARQAHEIHGEWLLNSYAISVSSSLSYAQLL---------------FNQIQNPQTQAWNS 58
           K ++AHE+  +       I    S+SY  +L               FN++      +WN+
Sbjct: 120 KVKEAHELFDK-------IPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNT 172

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           LI  FAQ+   +Q  F     L + +   +  +++  +        L   +EL+    ++
Sbjct: 173 LISGFAQN-GQMQKAFD----LFSVMPEKNGVSWSAMISGYVEHGDLEAAEELY----KN 223

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
              + VVV T ++ GY   G +E A  +F  M  ++LV+WNS+I+ Y +     + LK++
Sbjct: 224 VGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVF 283

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
           + M    V  +  +L  +L  C+++ AL +G  +H++  +    +      +L+ MY KC
Sbjct: 284 KTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKC 343

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G+LDSA+ +F  M ++DV+SWN+MI GY  HG G +A+  F +M      PD ITF+ ++
Sbjct: 344 GDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVI 403

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C+H G V+ GV+YF  M   + ++    HY C++DL GRAG+L++A+ +I    P  P
Sbjct: 404 LACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIK-EMPFKP 462

Query: 359 --VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
              ++ TLLG+C+IH+N+++ E A +NL+ L+  SA  YV LA IYA T   + VA+ RK
Sbjct: 463 HAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRK 522

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
           ++K + +   PG+SWIEI +  H+F   D+ HP+   I++KL E+  + K  GY  D  L
Sbjct: 523 MMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPD--L 580

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
                   E+  EK   +HSEKLAIAFGL  T  GT +R+ KNLR            S  
Sbjct: 581 EFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAI 640

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             R++IVRD  R+HHFR+G CSCGDYW
Sbjct: 641 EKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 147/348 (42%), Gaps = 64/348 (18%)

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHL-EALKLYERMRFEDVGLDGFTLVC--- 195
           +E+AR+VF+ M  R  V+WN+++S YT+ +  + EA +L++++   D       LVC   
Sbjct: 89  LESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLR 148

Query: 196 ------------------------LLSSCAHVGALNMGIFLHRIACEM----------GF 221
                                   L+S  A  G +     L  +  E           G+
Sbjct: 149 SYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGY 208

Query: 222 VE-----------------SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           VE                 SV V  A++  Y K G ++ A  +F RM  +++++WNSMI 
Sbjct: 209 VEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIA 268

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GY  + R ++ +  FK M+ +   P+ ++   +L GCS+   +  G +  H +VS+  L 
Sbjct: 269 GYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQ-MHQLVSKSPLS 327

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
                   L+ +Y + G L+ A ++       D + W  ++     H     G  A+   
Sbjct: 328 KDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQH---GAGRKALHLF 384

Query: 385 VQLEAAS-AGDYV-LLATIYACTKD---EEGVARTRKLIKSNGIKTTP 427
            ++   +   D++  +A I AC      + GV   + + K  GI+  P
Sbjct: 385 DKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKP 432



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 12/158 (7%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY-GVHGRGDEAISFFKQMLMAGF 287
           N  +  + +  +L+SA  VF +M  R  ++WN+M+ GY  V G+  EA   F ++     
Sbjct: 77  NKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIP---- 132

Query: 288 HPDSITF-LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
            PDS+++ + L+C     G VE  + +F+ M  +      I  +  L+  + + G+++KA
Sbjct: 133 EPDSVSYNIMLVCYLRSYG-VEAALAFFNKMPVK-----DIASWNTLISGFAQNGQMQKA 186

Query: 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            ++ +     + V W  ++     H ++E  E   KN+
Sbjct: 187 FDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNV 224


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 184/527 (34%), Positives = 292/527 (55%), Gaps = 16/527 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +   ++     +W S+I  + Q     +A+  +  M +  +  PD       + 
Sbjct: 396 LDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGI-WPDNIGLASAIS 454

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  +KA+ + Q++H  V  SGY   V +   L+  YA  G  + A S+F+ +  +D ++
Sbjct: 455 ACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKIT 514

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN ++S + Q+  + EAL+++ +M    V  + FT V  +S+ A++  +  G  +H    
Sbjct: 515 WNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVI 574

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G      V NAL+ +Y KCG+++ A   F  M +R+ +SWN++I     HG G EA+ 
Sbjct: 575 KTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALD 634

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM   G  P+ +TF+G+L  CSH GLVEEG+ YF  M S + + P   HY C+VD+ 
Sbjct: 635 LFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDIL 694

Query: 338 GRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAG+L++A + +     S + ++WRTLL +C++H+N+EIGE+A K L++LE   +  YV
Sbjct: 695 GRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYV 754

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+  YA T         RK++K  G++  PG SWIE+ N VH F V D+ HP A  IY+
Sbjct: 755 LLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYK 814

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            L ++  R   IGY +    +       +   + ++  HSEKLA+AFGL + P    LR+
Sbjct: 815 YLADLDDRLAKIGYIQGNYFLFHEKEKEQK--DPTAFVHSEKLAVAFGLMSLPPSMPLRV 872

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +KNLR            S    R++++RD  R+HHF +G CSCGD+W
Sbjct: 873 IKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 185/375 (49%), Gaps = 6/375 (1%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WN ++ A+ Q +S L   F     ++A+  RP+ FT+   L+ C     +N  +++H   
Sbjct: 313 WNLMLVAYGQ-ISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLS 371

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
           I++G+E  + VS  L+  Y+  G ++ AR + + +  +D+VSW S+I+ Y Q  F  EAL
Sbjct: 372 IKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEAL 431

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           + ++ M+   +  D   L   +S+CA + A+  G  +H      G+   V + NALV++Y
Sbjct: 432 ETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLY 491

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           A+CG    AF +F  +  +D ++WN M+ G+   G  +EA+  F +M  AG   +  TF+
Sbjct: 492 ARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFV 551

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
             +   ++   +++G +  H  V +       +    L+ LYG+ G +E A       S 
Sbjct: 552 SSISASANLADIKQGKQ-IHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSE 610

Query: 356 SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK---DEEGVA 412
            + V W T++ SC  H    +  + + + ++ E     D   +  + AC+     EEG+ 
Sbjct: 611 RNHVSWNTIITSCSQH-GWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLG 669

Query: 413 RTRKLIKSNGIKTTP 427
             + +   +GI   P
Sbjct: 670 YFKSMSSEHGIHPRP 684



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 164/329 (49%), Gaps = 2/329 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SLS A+ +F+++       +N+LI   AQ  +   A+  +  M ++  + PD  T    L
Sbjct: 193 SLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWT-PDCVTIASLL 251

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  +  LNK ++LH +++++G     ++  +L+  Y   GVI  A  +F +    ++V
Sbjct: 252 AACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVV 311

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            WN ++  Y Q S   ++  L+ +M    V  + FT  CLL +C + G +N+G  +H ++
Sbjct: 312 LWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLS 371

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF   +YV   L+DMY+K G LD A  +   +  +DV+SW SMI GY  H    EA+
Sbjct: 372 IKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEAL 431

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             FK M + G  PD+I     +  C+    + +G +  H  V        +  +  LV+L
Sbjct: 432 ETFKDMQLFGIWPDNIGLASAISACAGIKAMRQG-QQIHSRVYVSGYSADVSIWNALVNL 490

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           Y R G+ ++A  +       D + W  ++
Sbjct: 491 YARCGRSKEAFSLFEAIEHKDKITWNGMV 519



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 173/363 (47%), Gaps = 10/363 (2%)

Query: 6   HARYV--GLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           HA+ +  GL + R    I G  L++ YA      +  A+ +F Q+      +W +++  +
Sbjct: 65  HAKAITCGLGEDR----IAGNLLIDLYA--KKGLVQRARRVFEQLSARDNVSWVAMLSGY 118

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           A++    +A+  Y H +  S   P  +  +  L AC +     + + +H  V + G    
Sbjct: 119 ARNGLGEEAVGLY-HQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSE 177

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
            VV   L+  Y   G +  A  VF  MP  D V++N++IS + Q      AL+++E MR 
Sbjct: 178 TVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRL 237

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
                D  T+  LL++CA +G LN G  LH    + G      +  +L+D+Y KCG +  
Sbjct: 238 SGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVE 297

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F    + +V+ WN M+V YG      ++   F QM+ AG  P+  T+  LL  C++
Sbjct: 298 ALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTY 357

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
            G +  G E  H++  +   +  +   G L+D+Y + G L+KA  ++      D V W +
Sbjct: 358 AGEINLG-EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTS 416

Query: 364 LLG 366
           ++ 
Sbjct: 417 MIA 419



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 135/275 (49%), Gaps = 2/275 (0%)

Query: 92  FTFTLKACE-RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           F   L+ C   VK       +H   I  G     +    L+  YA  G+++ AR VF+ +
Sbjct: 44  FACALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQL 103

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
             RD VSW +++S Y +     EA+ LY +M    V    + L  +LS+C        G 
Sbjct: 104 SARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGR 163

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H    + G      VGNAL+ +Y + G+L  A  VFS M   D +++N++I  +   G
Sbjct: 164 LVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCG 223

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
            G+ A+  F++M ++G+ PD +T   LL  C+  G + +G +  H  + +  + P     
Sbjct: 224 NGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQ-LHSYLLKAGMSPDYIIE 282

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           G L+DLY + G + +ALE+  +   ++ VLW  +L
Sbjct: 283 GSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLML 317


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 179/431 (41%), Positives = 268/431 (62%), Gaps = 19/431 (4%)

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           +AA G ++ A+ VFDNM  RD+VSW ++I  Y + +  + AL L+  M+  +V  D FT+
Sbjct: 226 FAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTM 285

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
           V +L +CA +GAL +G ++     +       +VGNALVDMY KCGN+  A  VF  M +
Sbjct: 286 VSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQ 345

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           +D  +W +MIVG  ++G G+EA++ F  M+ A   PD IT++G+LC C    +V++G  +
Sbjct: 346 KDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSF 401

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHR 372
           F  M  ++ +KP + HYGC+VDL G  G LE+ALEVI N     + ++W + LG+C++H+
Sbjct: 402 FTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHK 461

Query: 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWI 432
           NV++ ++A K +++LE  +   YVLL  IYA +K  E + + RKL+   GIK TPG S +
Sbjct: 462 NVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLM 521

Query: 433 EIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSS 492
           E+   V++FV  D+SHP +  IY KLE +M      GY+ D S V +     E+  E + 
Sbjct: 522 ELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTSEVFL--DLGEEDKETAL 579

Query: 493 AYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHF 540
             HSEKLAIA+ L ++  G ++RIVKNLR            S AY+R+LIV+D+ R+HHF
Sbjct: 580 YRHSEKLAIAYALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHF 639

Query: 541 RDGLCSCGDYW 551
           R G CSC ++W
Sbjct: 640 RHGSCSCNNFW 650



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 185/393 (47%), Gaps = 33/393 (8%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S +++YA  +F+ I +P    WN++I+ +++   P   +  Y  ML +++ +PD FTF F
Sbjct: 54  SGNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNI-KPDRFTFPF 112

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           +LK   R  AL   +EL    ++ G++  + V    +  ++  G+++ A  VFD     +
Sbjct: 113 SLKGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACE 172

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +V+WN ++S Y                R +   +    LV  LS+C+ +  L  G  + +
Sbjct: 173 VVTWNIMLSGYN---------------RVKQFKISKMLLV--LSACSKLKDLEWGKHIFK 215

Query: 215 IACEMGFVESVYVGNALVD-MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
                      Y+   +V+ M+A CG +D A  VF  M+ RDV+SW +MI GY       
Sbjct: 216 -----------YINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFI 264

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
            A++ F++M M+   PD  T + +L  C+  G +E G E+    + + + K        L
Sbjct: 265 GALALFREMQMSNVKPDEFTMVSILIACALLGALELG-EWVKTCIDKNSNKNDSFVGNAL 323

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           VD+Y + G + KA +V       D   W T++    I+ + E       N+++  + +  
Sbjct: 324 VDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIE-ASVTPD 382

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTT 426
           +   +  + AC  D +G +    +   +GIK T
Sbjct: 383 EITYIGVLCACMVD-KGKSFFTNMTMQHGIKPT 414



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 130/307 (42%), Gaps = 31/307 (10%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN--GVIEAARSVFDNMPERDLVS 157
           E+ K++ + +++H   I+ G     +    ++    A+  G +  A  VFD +P   +  
Sbjct: 15  EKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFI 74

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++I  Y++ S     + +Y  M   ++  D FT    L       AL  G  L   A 
Sbjct: 75  WNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAV 134

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + GF  +++V  A + M++ CG +D A  VF      +V++WN M+ GY         + 
Sbjct: 135 KHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYN-------RVK 187

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            FK   M          L +L  CS    +E G   F  +           + G +  ++
Sbjct: 188 QFKISKM----------LLVLSACSKLKDLEWGKHIFKYI-----------NGGIVEHMF 226

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
              G++++A  V +     D V W  ++    +  N  IG +A+   +Q+      ++ +
Sbjct: 227 AACGEMDEAQGVFDNMKTRDVVSWTAMIDG-YLRMNHFIGALALFREMQMSNVKPDEFTM 285

Query: 398 LATIYAC 404
           ++ + AC
Sbjct: 286 VSILIAC 292


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 191/553 (34%), Positives = 298/553 (53%), Gaps = 45/553 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQ-----------SLSPLQAIFYY---------N 77
           +S A+ LF+++      +WN ++  +A+             +P++ +F +         N
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQN 268

Query: 78  HML------MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131
            ML        ++   +  ++   + A  + + +++ +EL   +      R V     ++
Sbjct: 269 GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPC----RNVASWNTML 324

Query: 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191
            GYA  G++E A++VFD MP++D VSW ++++ Y+Q     E L+L+  M      ++  
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS 384

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
              C+LS+CA + AL  G+ LH      G+    +VGNAL+ MY KCGN++ A   F  M
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
            +RDV+SWN+MI GY  HG G EA+  F  M      PD IT +G+L  CSH GLVE+G+
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGI 504

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKI 370
            YF+ M   + +    +HY C++DL GRAG+L +A +++ +     D  +W  LLG+ +I
Sbjct: 505 SYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRI 564

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS 430
           HRN E+G  A + + +LE  +AG YVLL+ IYA +       + R +++  G+K  PG+S
Sbjct: 565 HRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFS 624

Query: 431 WIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEK 490
           WIE+ N+VH F   D  HP+ + IY  LE++  R K  GY     +V       E   E 
Sbjct: 625 WIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEK--EH 682

Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYH 538
              YHSEKLA+A+G+   P G  +R++KNLR            S    R +++RD  R+H
Sbjct: 683 MLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFH 742

Query: 539 HFRDGLCSCGDYW 551
           HFR G CSCGDYW
Sbjct: 743 HFRGGSCSCGDYW 755



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 184/454 (40%), Gaps = 72/454 (15%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-----------PLQAIFYYNHML- 80
           S +  L  A  LF  I  P   ++N+L+ A A S S           P++    YN M+ 
Sbjct: 80  SANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMIS 139

Query: 81  ------MASLSR--------PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV 126
                 + SL+R         D  ++   L A  R   + + + L  F  R+ ++    +
Sbjct: 140 SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGL--FNSRTEWD---AI 194

Query: 127 STN-LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           S N LM GY   G +  AR +FD MP RD+VSWN ++S Y +    +EA +L++     D
Sbjct: 195 SWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRD 254

Query: 186 VGLDGFTLVCLLSSCAHVGALN-----MGIFLHRIACEMGFVESVYVGNALVDM------ 234
           V    FT   ++S  A  G L            R A     + + Y+   ++D       
Sbjct: 255 V----FTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFN 310

Query: 235 ----------------YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
                           YA+ G L+ A  VF  M ++D +SW +M+  Y   G  +E +  
Sbjct: 311 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQL 370

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M   G   +   F  +L  C+    +E G++  H  + R     G      L+ +Y 
Sbjct: 371 FIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ-LHGRLIRAGYGVGCFVGNALLAMYF 429

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYV 396
           + G +E A          D V W T++     H     G+ A++  ++++  +    D  
Sbjct: 430 KCGNMEDARNAFEEMEERDVVSWNTMIAGYARH---GFGKEALEIFDMMRTTSTKPDDIT 486

Query: 397 LLATIYACTKD---EEGVARTRKLIKSNGIKTTP 427
           L+  + AC+     E+G++    +    G+   P
Sbjct: 487 LVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKP 520



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 5/246 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           +L  YA   +  L  A+ +F+ +      +W +++ A++Q     + +  +  M      
Sbjct: 323 MLTGYA--QAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCG-E 379

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
             +   F   L  C  + AL    +LHG +IR+GY     V   L+  Y   G +E AR+
Sbjct: 380 WVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARN 439

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
            F+ M ERD+VSWN++I+ Y +  F  EAL++++ MR      D  TLV +L++C+H G 
Sbjct: 440 AFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGL 499

Query: 206 LNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
           +  GI + + +  + G          ++D+  + G L  A  +   M  + D   W +++
Sbjct: 500 VEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559

Query: 264 VGYGVH 269
               +H
Sbjct: 560 GASRIH 565



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 119/299 (39%), Gaps = 61/299 (20%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           R       ++ GY+ANG +  A S+F  +P  D  S+N+++     +S   +A  L++ M
Sbjct: 67  RSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM 126

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE-----SVYVG-------- 228
                  D  T   ++SS A+ G +++      +A E   V      + YV         
Sbjct: 127 PVR----DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEAR 182

Query: 229 --------------NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                         NAL+  Y + G +  A  +F RM  RDV+SWN M+ GY   G   E
Sbjct: 183 GLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVE 242

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR-------------- 320
           A   F     A    D  T+  ++ G +  G++EE    F  M  R              
Sbjct: 243 ARRLFD----AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQ 298

Query: 321 ----------YNLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
                     +N+ P   +  +  ++  Y +AG LE+A  V +T    D V W  +L +
Sbjct: 299 RRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAA 357



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 32/164 (19%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N  +  + + G +  A  +F+ M +R   ++N+M+ GY  +GR   A S F+ +     +
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNY 101

Query: 289 P---------------------------DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
                                       DS+T+  ++   ++ GLV     YF +     
Sbjct: 102 SYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPE-- 159

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             K  +   G L   Y R G++E+A  + N+ +  D + W  L+
Sbjct: 160 --KDAVSWNGMLA-AYVRNGRVEEARGLFNSRTEWDAISWNALM 200


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 199/565 (35%), Positives = 293/565 (51%), Gaps = 51/565 (9%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           +  L  A+   + +      AWN++I  +      L+A+  +  M +  + + D FT+T 
Sbjct: 238 NGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGI-QWDEFTYTS 296

Query: 95  TLKACERVKALNKCQELHGFVIRSG------------------YERC------------- 123
            L AC         +++H +++R+                   Y +C             
Sbjct: 297 VLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQM 356

Query: 124 ----VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
               +V    ++ GY   G I+ A+S F+ MPER+L++W  +IS   Q  F  E+LKL+ 
Sbjct: 357 PVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFN 416

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           RM+ E      +     + +CA + AL  G  LH     +GF  S+  GNAL+ MYAKCG
Sbjct: 417 RMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCG 476

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            +++A C+F  M   D +SWN+MI   G HG G +A+  F+ ML     PD ITFL +L 
Sbjct: 477 VVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLS 536

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDP 358
            CSH GLVEEG  YF  M   Y + PG  HY  ++DL  RAGK  +A ++I T      P
Sbjct: 537 TCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGP 596

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
            +W  LL  C+IH N+++G  A + L +L     G YVLL+ +YA     + VA+ RKL+
Sbjct: 597 PIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLM 656

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
           +  G+K  PG SWIE+ N+VH F+VDD  HP+   +Y  LEE+  + + +GY  D   V 
Sbjct: 657 RDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVL 716

Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
               S +   E   + HSEKLA+ FGL   P G ++R+ KNLR            S    
Sbjct: 717 HDMESEQK--EYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVE 774

Query: 527 RDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+++VRD  R+HHF++G CSCG+YW
Sbjct: 775 REIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 193/456 (42%), Gaps = 92/456 (20%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ 71
            ++ RQ   +    L+ +++ + +S+L+        +    T  +N++I  ++ +     
Sbjct: 73  FDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFG 132

Query: 72  AIFYYNHMLMASLSRPDTFTFTFTLKACER-VKALNKCQELHGFVIRSG----------- 119
           AI  +  +L     RPD FTFT  L A    V+   +CQ++H  V++SG           
Sbjct: 133 AIELFRDLLRNGF-RPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNAL 191

Query: 120 -----------------------------YERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
                                         ER  +  T ++ GY  NG ++AAR   D M
Sbjct: 192 LSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGM 251

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
            E+ +V+WN++IS Y    F LEAL+++ +M    +  D FT   +LS+CA     N G 
Sbjct: 252 TEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACA-----NAGF 306

Query: 211 FLH---------RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
           FLH         R         S+ V NAL  +Y KCG +D A  VF++M  +D++SWN+
Sbjct: 307 FLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNA 366

Query: 262 MIVGYGVHGRGDEAISFFKQM----LMA---------------------------GFHPD 290
           ++ GY   GR DEA SFF++M    L+                            GF P 
Sbjct: 367 ILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPC 426

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
              F G +  C+    +  G +  H  + R      +     L+ +Y + G +E A  + 
Sbjct: 427 DYAFAGAIIACAWLAALMHGRQ-LHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLF 485

Query: 351 NTSSPSDPVLWRTLLGSCKIH----RNVEIGEIAMK 382
            T    D V W  ++ +   H    + +E+ E+ +K
Sbjct: 486 LTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLK 521



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 35/119 (29%)

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK------------------- 253
           H IA   GF    Y+ N L+D+Y K  +L SA  +F  +R+                   
Sbjct: 40  HMIAS--GFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNS 97

Query: 254 --------------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
                         RD + +N+MI GY  +  G  AI  F+ +L  GF PD+ TF  +L
Sbjct: 98  NLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVL 156


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  351 bits (900), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 205/566 (36%), Positives = 316/566 (55%), Gaps = 26/566 (4%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           M +  +A   GL+   Q     G  L++ YA     S+ Y   +F+++ +    +W ++I
Sbjct: 403 MQIHAYAMKNGLDSDLQV----GNSLVDMYA--KFCSMKYMDCIFDKMPDKDVVSWTTII 456

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
              AQ+ S  +A+  +  + +  +   D    +  L AC  +K ++  +E+H ++IR G 
Sbjct: 457 AGHAQNGSHSRALELFREVQLEGIDL-DVMMISSILLACSGLKLISSVKEIHSYIIRKGL 515

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
              +V+   ++  Y   G ++ A  +F+ +  +D+VSW S+ISCY       EAL+L+  
Sbjct: 516 SD-LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHL 574

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M+   V  D  +LV +LS+ A + AL  G  +H      GFV    + + LVDMYA+CG 
Sbjct: 575 MKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGT 634

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           L+ +  VF+ +R +D++ W SMI  YG+HG G  AI  F++M      PD I F+ +L  
Sbjct: 635 LEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYA 694

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN--TSSPSDP 358
           CSH GL+ EG  +   M   Y L+P  +HY CLVDL GRA  LE+A + +      P+  
Sbjct: 695 CSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAE 754

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
           V W  LLG+C+IH N E+GEIA + L++++  + G+YVL++ +Y+  +  + V   R  +
Sbjct: 755 V-WCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRM 813

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHR-AKFIGYTKDESLV 477
           K++G+K  PG SWIE+GN+VH F+  DKSHP +  IY KL +I  + AK  GY      V
Sbjct: 814 KASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFV 873

Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
             +    E    +    HSE+LAIA+G+ TTP+G SLRI KNLR            S  +
Sbjct: 874 LHNAKEEEKV--QMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFF 931

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R+L++RD  R+HHF+ G+CSCGD W
Sbjct: 932 ERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 175/359 (48%), Gaps = 11/359 (3%)

Query: 17  QAHEIHGEWLLNSYAISVSSSLSY--------AQLLFNQIQNPQTQAWNSLIRAFAQSLS 68
            AH I    L NS  +S      Y        A+ LF+ + +     WN++I A+  +  
Sbjct: 101 HAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGE 160

Query: 69  PLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVST 128
           PL ++  Y  M ++ +   D  TF   LKAC  +K      E+HG  I+ GY   V V+ 
Sbjct: 161 PLGSLELYREMRVSGIPL-DACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVAN 219

Query: 129 NLMRGYAANGVIEAARSVFDNMPER-DLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           +++  Y     +  AR +FD MPE+ D+VSWNS+IS Y+     +EAL+L+  M+   + 
Sbjct: 220 SIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLA 279

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
            + +T V  L +C     +  G+F+H    +  +  +V+V NAL+ MYA+ G +  A  +
Sbjct: 280 PNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANI 339

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F  M   D +SWNSM+ G+  +G   EA+ F+ +M  AG  PD +  + ++   +  G  
Sbjct: 340 FYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNT 399

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
             G++  H    +  L   ++    LVD+Y +   ++    + +     D V W T++ 
Sbjct: 400 LHGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIA 457



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 204/403 (50%), Gaps = 18/403 (4%)

Query: 12  LNKARQAHEIHGEWLLNSYA--ISVSSS----------LSYAQLLFNQI-QNPQTQAWNS 58
           L   R   E+HG  +   Y   + V++S          L+ A+ LF+++ +     +WNS
Sbjct: 193 LKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNS 252

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           +I A++ +   ++A+  +  M  ASL+ P+T+TF   L+ACE    + +   +H  V++S
Sbjct: 253 MISAYSSNGQSIEALRLFGEMQKASLA-PNTYTFVAALQACEDSSFIKQGMFIHATVLKS 311

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
            Y   V V+  L+  YA  G +  A ++F NM + D +SWNS++S + Q   + EAL+ Y
Sbjct: 312 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 371

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             MR      D   ++ ++++ A  G    G+ +H  A + G    + VGN+LVDMYAK 
Sbjct: 372 HEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKF 431

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
            ++    C+F +M  +DV+SW ++I G+  +G    A+  F+++ + G   D +    +L
Sbjct: 432 CSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSIL 491

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             CS   L+   V+  H  + R  L   +   G +VD+YG  G ++ A  +       D 
Sbjct: 492 LACSGLKLI-SSVKEIHSYIIRKGLSDLVLQNG-IVDVYGECGNVDYAARMFELIEFKDV 549

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           V W +++ SC +H  +    + + +L++ E     D + L +I
Sbjct: 550 VSWTSMI-SCYVHNGLANEALELFHLMK-ETGVEPDSISLVSI 590



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 147/285 (51%), Gaps = 7/285 (2%)

Query: 87  PDTFT----FTFTLKACERVKALNKCQELHGFVIRS-GYERCVVVSTNLMRGYAANGVIE 141
           P  F+    ++  L+ C   KAL++ Q++H  +I S      V +ST L+  Y   G + 
Sbjct: 72  PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 131

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            A  +FD MP + + +WN++I  Y      L +L+LY  MR   + LD  T  C+L +C 
Sbjct: 132 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 191

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDVLSWN 260
            +     G  +H +A + G+V  V+V N++V MY KC +L+ A  +F RM  K DV+SWN
Sbjct: 192 LLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWN 251

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           SMI  Y  +G+  EA+  F +M  A   P++ TF+  L  C     +++G+ + H  V +
Sbjct: 252 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGM-FIHATVLK 310

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +    +     L+ +Y R GK+ +A  +       D + W ++L
Sbjct: 311 SSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSML 355


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 197/534 (36%), Positives = 305/534 (57%), Gaps = 27/534 (5%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           ++ LF    +    +WN++I +F+QS    +A+ ++  M++  +   D  T    L AC 
Sbjct: 167 SKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVEL-DGVTIASVLPACS 225

Query: 101 RVKALNKCQELHGFVIRSG--YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
            ++ L+  +E+H +V+R+    E   V S  L+  Y     +E+ R VFD++  R +  W
Sbjct: 226 HLERLDVGKEIHAYVLRNNDLIENSFVGSA-LVDMYCNCRQVESGRRVFDHILGRRIELW 284

Query: 159 NSIISCYTQASFHLEALKLY-ERMRFEDVGLDGFTLVCLLSSCAH-VGALNMGIFLHRIA 216
           N++IS Y +     +AL L+ E ++   +  +  T+  ++ +C H + A+  G  +H  A
Sbjct: 285 NAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYA 344

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                   + VG+ALVDMYAKCG L+ +  VF+ M  ++V++WN +I+  G+HG+G+EA+
Sbjct: 345 IRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEAL 404

Query: 277 SFFKQMLMAG-----FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
             FK M+          P+ +TF+ +   CSH GL+ EG+  F+ M   + ++P   HY 
Sbjct: 405 ELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYA 464

Query: 332 CLVDLYGRAGKLEKALEVINTSSPS-DPV-LWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
           C+VDL GRAG+LE+A E++NT     D V  W +LLG+C+IH+NVE+GE+A KNL+ LE 
Sbjct: 465 CVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEP 524

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
             A  YVLL+ IY+           RK ++  G+K  PG SWIE  ++VHKF+  D SHP
Sbjct: 525 NVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHP 584

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
            ++ ++  LE +  + +  GY  D S V    +  ED  E     HSEKLAIAFG+  TP
Sbjct: 585 QSEQLHGFLETLSEKMRKEGYVPDTSCVL--HNVDEDEKENLLCGHSEKLAIAFGILNTP 642

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            GT++R+ KNLR            S    R++IVRD  R+HHF++G CSCGDYW
Sbjct: 643 PGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 197/406 (48%), Gaps = 35/406 (8%)

Query: 53  TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
           T +W   +R+  +S    +AI  Y  M ++  +RPD F F   LKA   ++ L   +++H
Sbjct: 57  TASWVDALRSRTRSNDFREAISTYIEMTVSG-ARPDNFAFPAVLKAVSGLQDLKTGEQIH 115

Query: 113 GFVIRSGYERCVVVSTN---------------------LMRGYAANGVIEAARSVFDNMP 151
              ++ GY    V   N                     LM  YA  G ++ ++++F++  
Sbjct: 116 AAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFV 175

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           +RD+VSWN++IS ++Q+    EAL  +  M  E V LDG T+  +L +C+H+  L++G  
Sbjct: 176 DRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKE 235

Query: 212 LHR-IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
           +H  +      +E+ +VG+ALVDMY  C  ++S   VF  +  R +  WN+MI GY  +G
Sbjct: 236 IHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNG 295

Query: 271 RGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQ-GLVEEGVEYFHMMVSRYNLKPGIK 328
             ++A+  F +M+ +AG  P++ T   ++  C H    + +G E  H    R  L   I 
Sbjct: 296 LDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKE-IHAYAIRNMLASDIT 354

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
               LVD+Y + G L  +  V N     + + W  L+ +C +H   E      KN+V  E
Sbjct: 355 VGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVA-E 413

Query: 389 AASAGDY----VLLATIY-ACTKD---EEGVARTRKLIKSNGIKTT 426
           A   G+     V   T++ AC+      EG+    ++   +G++ T
Sbjct: 414 AGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPT 459



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 117/288 (40%), Gaps = 21/288 (7%)

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           P R   SW   +   T+++   EA+  Y  M       D F    +L + + +  L  G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 211 FLHRIACEMGF-VESVYVGNALVDMYAKCGNL--------------------DSAFCVFS 249
            +H  A + G+   SV V N LV+MY KCG +                    D +  +F 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
               RD++SWN+MI  +    R  EA++FF+ M++ G   D +T   +L  CSH   ++ 
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCK 369
           G E    ++   +L         LVD+Y    ++E    V +        LW  ++    
Sbjct: 233 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYA 292

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
            +   E   I    ++++         + + + AC      +A+ +++
Sbjct: 293 RNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEI 340


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 203/512 (39%), Positives = 286/512 (55%), Gaps = 50/512 (9%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D FT  F LK+C  +  +   + +HG  +R G E    V  +L+  Y   GVI  AR +F
Sbjct: 106 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 165

Query: 148 DNMPERDLVSWNSII-------------------------------SCYTQASFHLEALK 176
           D M  RD+ SWN++I                               S YTQ  F  +AL 
Sbjct: 166 DKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALG 225

Query: 177 LYERMRFE--DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L++ M  +  ++  +  T+V +L +CA   AL  G  +H  A  +G   +  V  AL  M
Sbjct: 226 LFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGM 285

Query: 235 YAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           YAKC +L  A C F  + +  +++++WN+MI  Y  HG G EA+S F+ ML AG  PD++
Sbjct: 286 YAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAV 345

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TF+GLL GCSH GL++ G+ +F+ M + ++++P ++HY C+VDL GRAG+L +A E+I+ 
Sbjct: 346 TFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQ 405

Query: 353 -SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
               + P +W  LL +C+ HRN+EI E+A + L  LE  ++G+YVLL+ +YA     E V
Sbjct: 406 MPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEV 465

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
            + R L+K  G+K +PG SWIEI  + H F+  DKSHP A  IY+ LE +  + K  GY 
Sbjct: 466 KKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYI 525

Query: 472 KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
            D S V    S  E   E +   HSEKLAIAFGL  T  G  LR+ KNLR          
Sbjct: 526 PDTSFVLHDISEEEK--EYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATK 583

Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             S  Y R++IVRD  R+H F+DG CSCGDYW
Sbjct: 584 FISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 5/152 (3%)

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L+ Y RM F  +  D FTL  +L SCA +  + MG  +H     +G     YVG +L+DM
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y KCG +  A  +F +M  RD+ SWN++I GY   G    A   F++M     H + +++
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERME----HRNIVSW 207

Query: 295 LGLLCGCSHQGLVEEGVEYF-HMMVSRYNLKP 325
             ++ G +  G  E+ +  F  M+     +KP
Sbjct: 208 TAMISGYTQNGFAEQALGLFDEMLQDGSEMKP 239



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 10/221 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM-ASLSRPDTFTFTFTL 96
           +  A+ LF ++++    +W ++I  + Q+    QA+  ++ ML   S  +P+  T    L
Sbjct: 189 IGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVL 248

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RD 154
            AC +  AL + + +H F    G      V T L   YA    +  AR  FD + +  ++
Sbjct: 249 PACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKN 308

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           L++WN++I+ Y      +EA+ ++E M    V  D  T + LLS C+H G ++ G+    
Sbjct: 309 LIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFN 368

Query: 215 IACEMGFVESVYVG----NALVDMYAKCGNLDSAFCVFSRM 251
              +MG + SV         +VD+  + G L  A  + S+M
Sbjct: 369 ---DMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQM 406


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 184/460 (40%), Positives = 276/460 (60%), Gaps = 24/460 (5%)

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGV--IEAARSVFDNMPERDLVSWNSIISCYTQA 168
           +H  V + G +    V+  ++  YA  G   + AAR +FD M +RD+VSWN++I+ Y Q 
Sbjct: 214 IHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMM-DRDVVSWNTMIALYAQN 272

Query: 169 SFHLEALKLYERMRF--EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
               EAL LY +M     DV  +  TL  +L +CAH GA+  G  +H     MG  ++VY
Sbjct: 273 GLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVY 332

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           VG ++VDMY+KCG ++ A+  F +++ +++LSW++MI GYG+HG G EA+  F  M  +G
Sbjct: 333 VGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSG 392

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
             P+ ITF+ +L  CSH GL+ EG  +++ M + + ++PG++HYGC+VDL GRAG L++A
Sbjct: 393 LKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEA 452

Query: 347 LEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
             +I       D  LW  LL +C+I++NVE+ +I  + L +L+A ++G YVLL+ IYA  
Sbjct: 453 YGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEA 512

Query: 406 KDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRA 465
              + V R R L+K+ GI+  PG+S +E+  + H F V DKSHP    IY  LE+++ R 
Sbjct: 513 GMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERI 572

Query: 466 KFIGYTKDESLVAVSGSSSEDFLEKSSAY--HSEKLAIAFGLATTPDGTSLRIVKNLR-- 521
              GY  +   V        D  E+ S    HSEKLA+AF L  +  G+ + ++KNLR  
Sbjct: 573 HDAGYVPNTGSVL----HDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVC 628

Query: 522 ----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                     +    R++I+RD  R+HHF+DGLCSCGDYW
Sbjct: 629 TDCHAAIKIITKLTGREIIIRDLKRFHHFKDGLCSCGDYW 668



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 122/241 (50%), Gaps = 4/241 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           ++++YA      L  A+ LF+ +      +WN++I  +AQ+    +A+  Y+ ML+    
Sbjct: 233 IIDAYAKGGGHDLGAARKLFDMMDR-DVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGD 291

Query: 86  -RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
            R +  T +  L AC    A+   + +H  V+R G E  V V T+++  Y+  G +E A 
Sbjct: 292 VRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAW 351

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
             F  +  ++++SW+++I+ Y    +  EAL ++  MR   +  +  T + +L++C+H G
Sbjct: 352 KAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAG 411

Query: 205 ALNMGIFLHR-IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSM 262
            L+ G + +  +  E G    V     +VD+  + G LD A+ +   M+ K D   W ++
Sbjct: 412 LLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGAL 471

Query: 263 I 263
           +
Sbjct: 472 L 472



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 123/270 (45%), Gaps = 9/270 (3%)

Query: 109 QELHGFVIRSG-YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ 167
           ++LH   +RSG +      ++ L+  Y        AR  FD +P  + V   ++ S   +
Sbjct: 108 RQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCMR 167

Query: 168 ASFHLEALKLYERMRFEDVG--LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV 225
            +     L ++  M        +D    +  LS+ A V    +   +H +  ++G     
Sbjct: 168 NNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQT 227

Query: 226 YVGNALVDMYAKCG--NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            V N ++D YAK G  +L +A  +F  M  RDV+SWN+MI  Y  +G   EA+  + +ML
Sbjct: 228 GVANTIIDAYAKGGGHDLGAARKLFD-MMDRDVVSWNTMIALYAQNGLSTEALGLYSKML 286

Query: 284 MAG--FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           + G     +++T   +L  C+H G ++ G +  H  V R  L+  +     +VD+Y + G
Sbjct: 287 IVGGDVRCNAVTLSAVLLACAHAGAIQTG-KRIHNQVVRMGLEDNVYVGTSVVDMYSKCG 345

Query: 342 KLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           K+E A +        + + W  ++    +H
Sbjct: 346 KVEMAWKAFQKIKGKNILSWSAMIAGYGMH 375


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 187/443 (42%), Positives = 276/443 (62%), Gaps = 19/443 (4%)

Query: 125 VVSTN-LMRGYAANGVIEAARSVFDNM-PERDLVSWNSIISCYTQASFHLEALKLYERMR 182
           VVS N ++ GY  +  + AA+ +F  M   R+ V+WN++IS Y Q      A+ ++++M+
Sbjct: 138 VVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQ 197

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
            E+V     T+V LLS+CAH+GAL+MG ++H           V +GNAL+DMY KCG L+
Sbjct: 198 SENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALE 257

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
           +A  VF  + ++++  WNS+IVG G++GRG+EAI+ F  M   G  PD +TF+G+L GCS
Sbjct: 258 AAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCS 317

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VL 360
           H GL+  G  YF  M+  Y L+PG++HYGC+VDL GRAG L++ALE+I  + P  P  ++
Sbjct: 318 HSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIR-AMPMKPNSMV 376

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
             +LL +C+IH++ ++GE   + L++L+    G+YV L+ +YA     + V   RKL+  
Sbjct: 377 LGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIK 436

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
            G+  TPG S IE+ N VH+FV  D SHP    I   L+EI    K  G+  + +   V 
Sbjct: 437 RGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTA--NVL 494

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
               E+  E +  YHSE++A+AFGL +TP G ++R+VKNLR            S A+ R+
Sbjct: 495 HDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKRE 554

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +IVRDR R+HHFR+G CSC DYW
Sbjct: 555 IIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P   +F+  L++C         +  H  +++ G+E  +++ T L+  YA  G ++ A+ V
Sbjct: 8   PSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRV 67

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           F  MP RD+V+ N++IS  ++  +  EA  L++ M   +       + C       +G +
Sbjct: 68  FMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCY----CKLGDI 123

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDVLSWNSMIVG 265
           N      R+  +   V+ V   NA++D Y K   L +A  +F  M   R+ ++WN+MI  
Sbjct: 124 NSA----RLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISA 179

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y   G    AIS F+QM      P  +T + LL  C+H G ++ G E+ H  +    LK 
Sbjct: 180 YVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMG-EWIHGYIRTKRLKI 238

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +     L+D+Y + G LE A++V +  S  +   W +++
Sbjct: 239 DVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSII 278



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 13/236 (5%)

Query: 35  SSSLSYAQLLFNQIQNPQTQ-AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93
           S  L  AQ LF  + + +    WN++I A+ Q      AI  +  M   ++ +P   T  
Sbjct: 151 SKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENV-KPTEVTMV 209

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
             L AC  + AL+  + +HG++     +  VV+   L+  Y   G +EAA  VF  +  +
Sbjct: 210 SLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRK 269

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           ++  WNSII          EA+  +  M  E +  DG T V +LS C+H G L+ G    
Sbjct: 270 NIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAG---Q 326

Query: 214 RIACEM----GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           R   EM    G    V     +VD+  + G L  A  +   M  +     NSM++G
Sbjct: 327 RYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 378



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 98/219 (44%), Gaps = 21/219 (9%)

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
           F+L+  L SCA  G   +G   H    +MGF   + +   L+D YAK G+L  A  VF  
Sbjct: 13  FSLI--LRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMG 70

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           M +RDV++ N+MI     HG  +EA + F  M       +S ++  ++      G +   
Sbjct: 71  MPRRDVVANNAMISALSKHGYVEEARNLFDNMT----ERNSCSWNSMITCYCKLGDINSA 126

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV-INTSSPSDPVLWRTLLGSCK 369
              F       N    +  +  ++D Y ++ +L  A E+ +   S  + V W T++ +  
Sbjct: 127 RLMFDC-----NPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISA-- 179

Query: 370 IHRNVEIGE----IAMKNLVQLEAASAGDYVLLATIYAC 404
               V+ GE    I+M   +Q E     +  +++ + AC
Sbjct: 180 ---YVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSAC 215


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 183/513 (35%), Positives = 290/513 (56%), Gaps = 21/513 (4%)

Query: 55   AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP-DTFTFTFTLKACERVKALNKCQELHG 113
            +WN+++  + +S    +A+ +++  LM  +  P D  T    +KA   +  L + +++  
Sbjct: 1066 SWNAIMFGYIKSNKSRKALEHFS--LMHEMGIPIDEITLATAIKASGCLINLKQGKQIQA 1123

Query: 114  FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
            + I+ G+   + VS+ ++  Y   G +  A  +F  +   D V+W ++IS Y +      
Sbjct: 1124 YAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDH 1183

Query: 174  ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
            AL +Y  MR   V  D +T   L+ + + + AL  G  +H    ++ +    +VG +LVD
Sbjct: 1184 ALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVD 1243

Query: 234  MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
            MY KCG++  A+ VF +M  R V+ WN+M++G   HG  DEA++ F+ M   G  PD +T
Sbjct: 1244 MYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVT 1303

Query: 294  FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
            F+G+L  CSH GL  E  +YF  M   Y + P I+HY CLVD  GRAG++++A  VI  S
Sbjct: 1304 FIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVI-AS 1362

Query: 354  SP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
             P  +   ++R LLG+C+   + E  +     L+ L+ + +  YVLL+ IYA ++  + V
Sbjct: 1363 MPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDV 1422

Query: 412  ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIG-Y 470
               R ++K   +K  PG+SWI++ N+VH FVVDD+SHP A +IY K+E++M R +  G Y
Sbjct: 1423 TDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSY 1482

Query: 471  TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
              D     +     E   E++  YHSEKLAIAFGL +TP   ++R++KNLR         
Sbjct: 1483 VPDTDFTLLDVEEEEK--ERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAI 1540

Query: 522  ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               S    R++++RD  R+HHFR+G CSCGDYW
Sbjct: 1541 KCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 174/374 (46%), Gaps = 14/374 (3%)

Query: 39   SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
            +YA  +F   Q     AWN  +  F  +   + AI  +  +L +++   D+ T    L A
Sbjct: 845  AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGH-DSVTLVIILSA 903

Query: 99   CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
                  L+  +++H  VI+S +   V VS +LM  Y+  GV+ AA   F N PE DL+SW
Sbjct: 904  AVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISW 963

Query: 159  NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA---LNMGIFLHRI 215
            N++IS Y Q +  +EA+  +  +  + +  D FTL  +L +C+         +G  +H  
Sbjct: 964  NTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVY 1023

Query: 216  ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
            A + G +   +V  AL+D+Y+K G +D A  +       D+ SWN+++ GY    +  +A
Sbjct: 1024 AIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKA 1083

Query: 276  ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH----YG 331
            +  F  M   G   D IT    +        +++G +     +  Y +K G  +      
Sbjct: 1084 LEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ-----IQAYAIKLGFNNDLWVSS 1138

Query: 332  CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
             ++D+Y + G +  ALE+    S  D V W T++ S  I    E   +++ +L+++    
Sbjct: 1139 GVLDMYIKCGDMPNALELFGEISRPDEVAWTTMI-SGYIENGDEDHALSVYHLMRVSGVQ 1197

Query: 392  AGDYVLLATIYACT 405
              +Y     I A +
Sbjct: 1198 PDEYTFATLIKASS 1211



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 188/383 (49%), Gaps = 21/383 (5%)

Query: 10   VGLNKARQAHEIHGEWLLNSYA--ISVSSSL----SYAQLLFNQ----IQNPQTQ--AWN 57
            VG +      +IH   + +S+A  + VS+SL    S A +++      I +P+    +WN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 58   SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC---ERVKALNKCQELHGF 114
            ++I ++AQ+   ++AI  +  +L   L +PD FT    L+AC   +  +      ++H +
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGL-KPDQFTLASVLRACSTGDEGEYFTLGSQVHVY 1023

Query: 115  VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
             I+ G      VST L+  Y+  G ++ A  +     + DL SWN+I+  Y +++   +A
Sbjct: 1024 AIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKA 1083

Query: 175  LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
            L+ +  M    + +D  TL   + +   +  L  G  +   A ++GF   ++V + ++DM
Sbjct: 1084 LEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDM 1143

Query: 235  YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
            Y KCG++ +A  +F  + + D ++W +MI GY  +G  D A+S +  M ++G  PD  TF
Sbjct: 1144 YIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTF 1203

Query: 295  LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY--GCLVDLYGRAGKLEKALEVINT 352
              L+   S    +E+G +  H  V +  L   + H+    LVD+Y + G ++ A  V   
Sbjct: 1204 ATLIKASSCLTALEQGKQ-IHANVVK--LDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRK 1260

Query: 353  SSPSDPVLWRTLLGSCKIHRNVE 375
                  V W  +L     H +V+
Sbjct: 1261 MDVRKVVFWNAMLLGLAQHGHVD 1283



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 8/193 (4%)

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ---A 168
           H  ++ SG      ++ NL+  Y+  G + +AR VFD   +RDLV+WNSI++ Y Q   +
Sbjct: 634 HARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADS 693

Query: 169 SFH--LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
           S+   LE  +L+  +R     +   TL  LL  C   G + +   +H  A ++GF   ++
Sbjct: 694 SYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLF 753

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           V  ALV++Y K G +  A  +F +M +RD + WN M+  Y  +   DEA+ FF     +G
Sbjct: 754 VSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSG 813

Query: 287 FHPDSITFLGLLC 299
           F PD   F  L C
Sbjct: 814 FXPD---FSNLHC 823



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 102/454 (22%), Positives = 185/454 (40%), Gaps = 68/454 (14%)

Query: 1    MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSS--SLSYAQLLFNQIQNPQTQAWNS 58
            +G + HAR V       + ++   +L N+     S   SL  A+ +F++  +     WNS
Sbjct: 629  LGKRAHARIV------TSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNS 682

Query: 59   LIRAFAQSLSPLQAIFYYNHML----MASLSRPDTFTFTFTLKACERVKA-----LNKCQ 109
            ++ A+AQ      A   Y ++L    +  L R   F+ T    A           +   +
Sbjct: 683  ILAAYAQF-----ADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSE 737

Query: 110  ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
             +HG+ ++ G+E  + VS  L+  Y   G++  AR +FD MPERD V WN ++  Y + S
Sbjct: 738  TVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENS 797

Query: 170  FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
            F  EAL+ +          D   L C+      +G +N  +  +R        E V    
Sbjct: 798  FQDEALRFFSAFHRSGFXPDFSNLHCV------IGGVNSDVSNNR----KRHAEQVKA-- 845

Query: 230  ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
                          A  +F   +  ++ +WN  +  +   G+   AI  FK +L +    
Sbjct: 846  -------------YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGH 892

Query: 290  DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
            DS+T + +L        ++ G E  H +V + +  P +     L+++Y +AG +  A + 
Sbjct: 893  DSVTLVIILSAAVGADDLDLG-EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKT 951

Query: 350  INTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409
               S   D + W T++ S     N+E+  I     +  +      + L + + AC+  +E
Sbjct: 952  FINSPELDLISWNTMISSYA-QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDE 1010

Query: 410  GVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
            G                    +  +G+QVH + +
Sbjct: 1011 G-------------------EYFTLGSQVHVYAI 1025



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L +G   H      G +   Y+ N L+ MY+KCG+L SA  VF +   RD+++WNS++  
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 266 YGVHGRGD-----EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           Y            E    F  +   GF    +T   LL  C   G V+   E  H    +
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS-ETVHGYAVK 745

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
              +  +   G LV++Y + G + +A  + +     D VLW  +L
Sbjct: 746 IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVML 790


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 183/513 (35%), Positives = 290/513 (56%), Gaps = 21/513 (4%)

Query: 55   AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP-DTFTFTFTLKACERVKALNKCQELHG 113
            +WN+++  + +S    +A+ +++  LM  +  P D  T    +KA   +  L + +++  
Sbjct: 1066 SWNAIMFGYIKSNKSRKALEHFS--LMHEMGIPIDEITLATAIKASGCLINLKQGKQIQA 1123

Query: 114  FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
            + I+ G+   + VS+ ++  Y   G +  A  +F  +   D V+W ++IS Y +      
Sbjct: 1124 YAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDH 1183

Query: 174  ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
            AL +Y  MR   V  D +T   L+ + + + AL  G  +H    ++ +    +VG +LVD
Sbjct: 1184 ALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVD 1243

Query: 234  MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
            MY KCG++  A+ VF +M  R V+ WN+M++G   HG  DEA++ F+ M   G  PD +T
Sbjct: 1244 MYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVT 1303

Query: 294  FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
            F+G+L  CSH GL  E  +YF  M   Y + P I+HY CLVD  GRAG++++A  VI  S
Sbjct: 1304 FIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVI-AS 1362

Query: 354  SP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
             P  +   ++R LLG+C+   + E  +     L+ L+ + +  YVLL+ IYA ++  + V
Sbjct: 1363 MPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDV 1422

Query: 412  ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIG-Y 470
               R ++K   +K  PG+SWI++ N+VH FVVDD+SHP A +IY K+E++M R +  G Y
Sbjct: 1423 TDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSY 1482

Query: 471  TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
              D     +     E   E++  YHSEKLAIAFGL +TP   ++R++KNLR         
Sbjct: 1483 VPDTDFTLLDVEEEEK--ERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAI 1540

Query: 522  ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               S    R++++RD  R+HHFR+G CSCGDYW
Sbjct: 1541 KCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 174/374 (46%), Gaps = 14/374 (3%)

Query: 39   SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
            +YA  +F   Q     AWN  +  F  +   + AI  +  +L +++   D+ T    L A
Sbjct: 845  AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGH-DSVTLVIILSA 903

Query: 99   CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
                  L+  +++H  VI+S +   V VS +LM  Y+  GV+ AA   F N PE DL+SW
Sbjct: 904  AVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISW 963

Query: 159  NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA---LNMGIFLHRI 215
            N++IS Y Q +  +EA+  +  +  + +  D FTL  +L +C+         +G  +H  
Sbjct: 964  NTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVY 1023

Query: 216  ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
            A + G +   +V  AL+D+Y+K G +D A  +       D+ SWN+++ GY    +  +A
Sbjct: 1024 AIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKA 1083

Query: 276  ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH----YG 331
            +  F  M   G   D IT    +        +++G +     +  Y +K G  +      
Sbjct: 1084 LEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ-----IQAYAIKLGFNNDLWVSS 1138

Query: 332  CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
             ++D+Y + G +  ALE+    S  D V W T++ S  I    E   +++ +L+++    
Sbjct: 1139 GVLDMYIKCGDMPNALELFGEISRPDEVAWTTMI-SGYIENGDEDHALSVYHLMRVSGVQ 1197

Query: 392  AGDYVLLATIYACT 405
              +Y     I A +
Sbjct: 1198 PDEYTFATLIKASS 1211



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 187/383 (48%), Gaps = 21/383 (5%)

Query: 10   VGLNKARQAHEIHGEWLLNSYA--ISVSSSL----SYAQLLFNQ----IQNPQTQ--AWN 57
            VG +      +IH   + +S+A  + VS+SL    S A +++      I +P+    +WN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 58   SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC---ERVKALNKCQELHGF 114
            ++I ++AQ+   ++AI  +  +L   L +PD FT    L+AC   +  +      ++H +
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGL-KPDQFTLASVLRACSTGDEGEYFTLGSQVHVY 1023

Query: 115  VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
             I+ G      VST L+  Y+  G ++ A  +     + DL SWN+I+  Y +++   +A
Sbjct: 1024 AIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKA 1083

Query: 175  LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
            L+ +  M    + +D  TL   + +   +  L  G  +   A ++GF   ++V + ++DM
Sbjct: 1084 LEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDM 1143

Query: 235  YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
            Y KCG++ +A  +F  + + D ++W +MI GY  +G  D A+S +  M ++G  PD  TF
Sbjct: 1144 YIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTF 1203

Query: 295  LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY--GCLVDLYGRAGKLEKALEVINT 352
              L+   S    +E+G +    +V    L   + H+    LVD+Y + G ++ A  V   
Sbjct: 1204 ATLIKASSCLTALEQGKQIHANVV---KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRK 1260

Query: 353  SSPSDPVLWRTLLGSCKIHRNVE 375
                  V W  +L     H +V+
Sbjct: 1261 MDVRKVVFWNAMLLGLAQHGHVD 1283



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 8/193 (4%)

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ---A 168
           H  ++ SG      ++ NL+  Y+  G + +AR VFD   +RDLV+WNSI++ Y Q   +
Sbjct: 634 HARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADS 693

Query: 169 SFH--LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
           S+   LE  +L+  +R     +   TL  LL  C   G + +   +H  A ++GF   ++
Sbjct: 694 SYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLF 753

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           V  ALV++Y K G +  A  +F +M +RD + WN M+  Y  +   DEA+ FF     +G
Sbjct: 754 VSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSG 813

Query: 287 FHPDSITFLGLLC 299
           F PD   F  L C
Sbjct: 814 FFPD---FSNLHC 823



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 102/454 (22%), Positives = 185/454 (40%), Gaps = 68/454 (14%)

Query: 1    MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSS--SLSYAQLLFNQIQNPQTQAWNS 58
            +G + HAR V       + ++   +L N+     S   SL  A+ +F++  +     WNS
Sbjct: 629  LGKRAHARIV------TSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNS 682

Query: 59   LIRAFAQSLSPLQAIFYYNHML----MASLSRPDTFTFTFTLKACERVKA-----LNKCQ 109
            ++ A+AQ      A   Y ++L    +  L R   F+ T    A           +   +
Sbjct: 683  ILAAYAQF-----ADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSE 737

Query: 110  ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
             +HG+ ++ G+E  + VS  L+  Y   G++  AR +FD MPERD V WN ++  Y + S
Sbjct: 738  TVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENS 797

Query: 170  FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
            F  EAL+ +          D   L C+      +G +N  +  +R        E V    
Sbjct: 798  FQDEALRFFSAFHRSGFFPDFSNLHCV------IGGVNSDVSNNR----KRHAEQVKA-- 845

Query: 230  ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
                          A  +F   +  ++ +WN  +  +   G+   AI  FK +L +    
Sbjct: 846  -------------YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGH 892

Query: 290  DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
            DS+T + +L        ++ G E  H +V + +  P +     L+++Y +AG +  A + 
Sbjct: 893  DSVTLVIILSAAVGADDLDLG-EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKT 951

Query: 350  INTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409
               S   D + W T++ S     N+E+  I     +  +      + L + + AC+  +E
Sbjct: 952  FINSPELDLISWNTMISSYA-QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDE 1010

Query: 410  GVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
            G                    +  +G+QVH + +
Sbjct: 1011 G-------------------EYFTLGSQVHVYAI 1025



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L +G   H      G +   Y+ N L+ MY+KCG+L SA  VF +   RD+++WNS++  
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 266 YGVHGRGD-----EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           Y            E    F  +   GF    +T   LL  C   G V+   E  H    +
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS-ETVHGYAVK 745

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
              +  +   G LV++Y + G + +A  + +     D VLW  +L
Sbjct: 746 IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVML 790


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 195/567 (34%), Positives = 320/567 (56%), Gaps = 32/567 (5%)

Query: 13  NKARQAHEIHGEWLLNSYA------------ISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           +K +Q  +IH   L   ++            + V   + YA+ +F+++  P+   WN+L 
Sbjct: 22  SKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLF 81

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
           + + ++  P +++  Y  M    + RPD FT+ F +KA  ++   +    LH  V++ G+
Sbjct: 82  KGYVRNQLPFESLLLYKKMRDLGV-RPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGF 140

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
               +V+T L+  Y   G + +A  +F++M  +DLV+WN+ ++   Q      AL+ + +
Sbjct: 141 GCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNK 200

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M  + V  D FT+V +LS+C  +G+L +G  ++  A +     ++ V NA +DM+ KCGN
Sbjct: 201 MCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGN 260

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
            ++A  +F  M++R+V+SW++MIVGY ++G   EA++ F  M   G  P+ +TFLG+L  
Sbjct: 261 TEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSA 320

Query: 301 CSHQGLVEEGVEYFHMMV--SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
           CSH GLV EG  YF +MV  +  NL+P  +HY C+VDL GR+G LE+A E I    P +P
Sbjct: 321 CSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIK-KMPVEP 379

Query: 359 V--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
              +W  LLG+C +HR++ +G+     LV+        +VLL+ IYA     + V + R 
Sbjct: 380 DTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRS 439

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
            ++  G K    +S +E   ++H F   DKSHP +  IY KL+EI+ + + +GY  D   
Sbjct: 440 KMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCS 499

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSI----AYSR----- 527
           V       E   E S ++HSEKLAIAFGL     G  +R++KNLR+     A+S+     
Sbjct: 500 VFHDVEMEEK--ECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSL 557

Query: 528 ---DLIVRDRVRYHHFRDGLCSCGDYW 551
              ++I+RD+ R+HHFR+G+CSC ++W
Sbjct: 558 TSTEIIMRDKNRFHHFRNGVCSCKEFW 584


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 195/514 (37%), Positives = 301/514 (58%), Gaps = 22/514 (4%)

Query: 57  NSLIRAFAQSLSP---LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ-ELH 112
           N+LIRA A S  P   L+A  ++  ML +++  P+ FTF F LKAC  +        + H
Sbjct: 97  NTLIRAHAASPLPSARLRAAAFFPLMLRSAV-LPNKFTFPFLLKACAALPGFPGVGLQAH 155

Query: 113 GFVIRSGYERCVVVSTNLMRGYAANG--VIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
              ++ G+     VS  L+  Y+  G   +  AR+VFD M +  +V+W+++I  Y +   
Sbjct: 156 AAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGL 215

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
             +A+ L+  M+   V  D  T++ +L++ A +GAL +  ++ R     G  +SV + NA
Sbjct: 216 SSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTLCNA 275

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           L+D  AKCG++D A  VF  M +R V+SW S+I    + GRG EA++ F+ M  AG  PD
Sbjct: 276 LIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPD 335

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
            + F+G+L  CSH G+V+EG  YF  M   Y + P I+HYGC+VD++GRAG +E+A+E I
Sbjct: 336 DVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFI 395

Query: 351 NT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409
           +T     +P++WRTL+ +C+ H  +E+GE   +NL+    A   +YV+L+ +YA T+  +
Sbjct: 396 HTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVMLSNVYALTQRWK 455

Query: 410 GVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIG 469
             +  R+ +   GIK  PG S +E+  +VH+F+  D+SHP    IY  +EE+    K +G
Sbjct: 456 EKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELKHVG 515

Query: 470 YTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-------- 521
           +    S V +     E+  E +  +HSEKLAIAF L  TP GT +R+VKNLR        
Sbjct: 516 HISATSEVLL--DLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAA 573

Query: 522 ----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               S+ Y+R++IVRDR R+H F++G CSC D+W
Sbjct: 574 IKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 187/554 (33%), Positives = 309/554 (55%), Gaps = 28/554 (5%)

Query: 18  AHEIHGEWLLNSYAISVSSSLSYAQL--LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFY 75
           A E+  E    + ++   S LS   +  +F  +      +WN++I   A++    + +  
Sbjct: 167 AGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRM 226

Query: 76  YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
              M  A+L +PD+FT +  L        +++ +E+HG  IR G +  + V+++L+  YA
Sbjct: 227 IREMGGANL-KPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYA 285

Query: 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
               +  +  VF  + ERD +SWNSII+   Q     E L+ + +M    +    ++   
Sbjct: 286 KCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSS 345

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           ++ +CAH+  L++G  LH      GF E++++ ++LVDMYAKCGN+ +A  +F RMR RD
Sbjct: 346 IMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRD 405

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           ++SW +MI+G  +HG+  +AI  F+QM   G  P+ + F+ +L  CSH GLV+E  +YF+
Sbjct: 406 MVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFN 465

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS--SPSDPVLWRTLLGSCKIHRN 373
            M   + + PG++HY  + DL GRAG+LE+A + I      P+  + W TLL +C++H N
Sbjct: 466 SMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSI-WATLLSACRVHXN 524

Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIE 433
           +++ E     +++++  + G Y+LLA IY+  +  +  A+ R  ++  GI+ TP  SWIE
Sbjct: 525 IDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIE 584

Query: 434 IGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA 493
           + N+V+ F+  D+SHP  + I   +E ++   +  GY  D S V        D  E+   
Sbjct: 585 VKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEV------HHDVEEEQKK 638

Query: 494 Y----HSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRY 537
           Y    HSE+LAI FG+  TP G ++R+ KNLR            S    R+++VRD  R+
Sbjct: 639 YLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRF 698

Query: 538 HHFRDGLCSCGDYW 551
           HHF++G CSCGDYW
Sbjct: 699 HHFKNGTCSCGDYW 712



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 181/394 (45%), Gaps = 35/394 (8%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LFN I  P   AW S+IR +     P Q++  +  ML + L  PD   F   LK+C  + 
Sbjct: 62  LFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLY-PDHNVFPSVLKSCALLM 120

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE---------------------- 141
            LN  + LHG++IR G +  +     LM  Y+    +E                      
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 142 ----------AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191
                     + R +F+ MPE+DLVSWN+II+   +   + E L++   M   ++  D F
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           TL  +L   A    ++ G  +H  +   G    +YV ++L+DMYAKC  +  +  VF+ +
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
            +RD +SWNS+I G   +G  DE + FF+QMLMA   P S +F  ++  C+H   +  G 
Sbjct: 301 TERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 360

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +  H  ++R      I     LVD+Y + G +  A ++ +     D V W  ++  C +H
Sbjct: 361 Q-LHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALH 419

Query: 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
                  I +   ++ E         +A + AC+
Sbjct: 420 GQAP-DAIELFEQMETEGIKPNHVAFMAVLTACS 452



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 126/299 (42%), Gaps = 34/299 (11%)

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161
           +K+ ++ Q+LH  V++      +   + L+  Y+   ++  +  +F+ +     ++W S+
Sbjct: 19  IKSRSQAQQLHAQVLKF-QASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSV 77

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           I CYT      ++L  +  M    +  D      +L SCA +  LN+G  LH     +G 
Sbjct: 78  IRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGL 137

Query: 222 VESVYVGNALVDMYAKCGNL--------------------------------DSAFCVFS 249
              +Y GNAL++MY+K   L                                DS   +F 
Sbjct: 138 DFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFE 197

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            M ++D++SWN++I G   +G  +E +   ++M  A   PDS T   +L   +    +  
Sbjct: 198 MMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISR 257

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
           G E  H    R  L   I     L+D+Y +  ++  +  V    +  D + W +++  C
Sbjct: 258 GKE-IHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGC 315


>gi|125528180|gb|EAY76294.1| hypothetical protein OsI_04228 [Oryza sativa Indica Group]
          Length = 646

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 213/545 (39%), Positives = 305/545 (55%), Gaps = 39/545 (7%)

Query: 38  LSYAQLLFNQIQ----NPQT--QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT 91
           L  A+ L +++      P T   A+NSLI   A    P      +  M +A+  R D  T
Sbjct: 110 LPLARQLLDELPLASTPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVT 169

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA--ANGVIEAARSVFDN 149
               L A   V  L    +LH    RSG      V+  L+  YA    G    AR VF+ 
Sbjct: 170 ----LLALVPVAPLGIVPQLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEE 225

Query: 150 MPE--RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG---LDGFTLVCLLSSCAHVG 204
           MP   RDLVSWN++IS + Q    +EA++LY RMR  + G    D  TLV +LSSCAH G
Sbjct: 226 MPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTG 285

Query: 205 ALNMGIFLHRIACEM--GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           A  +G+ + +   +   GF +++ + NAL++ +A+CG+L  A  +F  M +R V+SW ++
Sbjct: 286 ARRVGLDVEQYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTAL 345

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I+GYG+HG+GD A+  F+ M+     PDS+  +GLL  CSH G+ +EG +YF  M   Y 
Sbjct: 346 IIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYC 405

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIA 380
           L+P ++HY C+VDL GRAG+L++A E+I  S P  +D  +W  LLG+CKIH+NVE+GE A
Sbjct: 406 LRPKLEHYTCMVDLLGRAGRLDEARELI-ASMPMAADGAVWGALLGACKIHKNVEMGEEA 464

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + +V LE A+ G YVL+A IYA     +GVA+ R  ++  G++  PG S++E   +VH 
Sbjct: 465 FERVVSLEPANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHL 524

Query: 441 FVVDDKSHPDADMIYRKLEEI--MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           F+ DD SHP A  IY  + E+  M + K  G   D        + +E        +HSEK
Sbjct: 525 FMADDHSHPQARRIYELVVELERMVKEKTGG---DVVEERAEKAVAEAAAVPLVGFHSEK 581

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LA+AFGL  T  G+ + ++KNLR            S   +R  +VRD  R+H F +G CS
Sbjct: 582 LAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACS 641

Query: 547 CGDYW 551
           C DYW
Sbjct: 642 CRDYW 646


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 214/572 (37%), Positives = 306/572 (53%), Gaps = 54/572 (9%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L  +YA S    LS A  L  + ++P    + S I A +     L A+   + ML   L 
Sbjct: 329 LQRAYAASGRLDLSLA--LLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGL- 385

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSG--------------YERC-------- 123
            P   T + +L AC   + L+  + LHG+  +                Y R         
Sbjct: 386 LPTAHTLSASLPAC---RGLSPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARA 442

Query: 124 ----------VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
                     VV  T ++  YA  G ++ ARS+FD +P +D V WN++I  YTQ     E
Sbjct: 443 LFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNE 502

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE-SVYVGNALV 232
           AL+L+ RM    V  D  T+V +LS+ A +G +  G +LH        V+ SV VG AL+
Sbjct: 503 ALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALI 562

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           DMY KCG+L  A  VF  +  +D++ WN+MI GY +HG   +A+  F Q    G  P  I
Sbjct: 563 DMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDI 622

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TF+GLL  CSH G+VEEG E+F  M   Y + P I+HYGC+VDL GRAG +++A  ++ +
Sbjct: 623 TFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQS 682

Query: 353 SS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
                D V+W +LL +C++H+N+ +G+     LV    A++G Y+LL+ IYA   +   V
Sbjct: 683 MKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEV 742

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
           AR R ++K++GI+  PG S IEI  +V++FV  D SHP  D IY  L+++    K  G+ 
Sbjct: 743 ARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHV 802

Query: 472 KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIA------- 524
               LV       E   EK+ A HSEKLA+AFGL +T  G +++IVKNLR+ +       
Sbjct: 803 PQTELVL--HDLDEATKEKALAVHSEKLALAFGLISTQPGATIKIVKNLRACSDCHAVLK 860

Query: 525 -----YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                  R ++ RDR R+HHF DG CSCGDYW
Sbjct: 861 LISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 137/311 (44%), Gaps = 42/311 (13%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCV--VVSTNLMRGYAANGVIEAARSVFDNMPER 153
           L +C   +   +  ELH  V+R+G        V+  L R YAA+G ++ + ++     + 
Sbjct: 296 LTSCSTAR---RAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDP 352

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
             + + S I  ++     L AL L   M  + +     TL   L +C     L+ G  LH
Sbjct: 353 TAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACR---GLSPGRALH 409

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGN--------------------------------L 241
             A ++      YV  AL+ MYA+ G+                                L
Sbjct: 410 GYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGAL 469

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           D A  +F  +  +D + WN+MI GY  HGR +EA+  F++ML +G  PD +T + +L   
Sbjct: 470 DDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAV 529

Query: 302 SHQGLVEEGVEYFHMMV-SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           +  G VE G ++ H  V +   ++  ++    L+D+Y + G L  A++V +     D V+
Sbjct: 530 AQLGTVESG-KWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVV 588

Query: 361 WRTLLGSCKIH 371
           W  ++    +H
Sbjct: 589 WNAMINGYAMH 599



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 124/273 (45%), Gaps = 13/273 (4%)

Query: 9   YVGLNKARQAHEIHGEWLLNSYAISVSSSLS-YAQL--------LFNQIQNPQTQAWNSL 59
           Y     A  A  +  + L + + +SV++ L+ YA +        LF+ +       WN++
Sbjct: 431 YARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAM 490

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS- 118
           I  + Q   P +A+  +  ML  S   PD  T    L A  ++  +   + LH +V  S 
Sbjct: 491 IDGYTQHGRPNEALRLFRRML-GSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSR 549

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
             +  V V T L+  Y   G +  A  VF  + ++D+V WN++I+ Y       +AL+++
Sbjct: 550 RVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMF 609

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAK 237
            + R + +     T + LL++C+H G +  G  F   +  E G    +     +VD+  +
Sbjct: 610 VQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGR 669

Query: 238 CGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVH 269
            G +  AFC+   M+   D + W S++    +H
Sbjct: 670 AGLIKEAFCLVQSMKITPDAVMWVSLLAACRLH 702


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 197/559 (35%), Positives = 291/559 (52%), Gaps = 51/559 (9%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F ++       WN++I  +  S   ++A   +  M++  +   D FTFT  L AC 
Sbjct: 247 ARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPL-DEFTFTSVLSACA 305

Query: 101 RVKALNKCQELHGFVIRSGY----ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
                   + +HG + R       E  + V+  L+  Y+  G I  AR +FDNM  +D+V
Sbjct: 306 NAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVV 365

Query: 157 SWNSIISCYTQAS-------------------------------FHLEALKLYERMRFED 185
           SWN+I+S Y ++S                               F  +ALKL+ RMR ED
Sbjct: 366 SWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAED 425

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           V    +T    +S+C  +G+L  G  LH    ++GF  S   GNAL+ MYA+CG +  A 
Sbjct: 426 VKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEAN 485

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            +F  M   D +SWN+MI   G HG G EA+  F +M+  G +PD I+FL +L  C+H G
Sbjct: 486 LMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSG 545

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTL 364
           LV+EG +YF  M   + + PG  HY  L+DL GRAG++ +A ++I T      P +W  +
Sbjct: 546 LVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAI 605

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
           L  C+   ++E+G  A   L ++     G Y+LL+  Y+        AR RKL++  G+K
Sbjct: 606 LSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVK 665

Query: 425 TTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSS 484
             PG SWIE GN+VH FVV D  HP+A  +Y+ LE +  R + +GY  D  +V       
Sbjct: 666 KEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPH 725

Query: 485 EDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVR 532
           +   E     HSE+LA+ FGL   P G ++ ++KNLR            S A  R+++VR
Sbjct: 726 QK--EHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIVVR 783

Query: 533 DRVRYHHFRDGLCSCGDYW 551
           D  R+HHF+DG CSCG+YW
Sbjct: 784 DVRRFHHFKDGECSCGNYW 802



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 170/356 (47%), Gaps = 47/356 (13%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQ--TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD 88
           A + +  L  A   F+ +   +  T   N++I A+A++     A+  +  +L +   RPD
Sbjct: 97  AYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPD 156

Query: 89  TFTFTFTLKACERVK--ALNKCQELHGFVIRSG--------------YERCVVVS----- 127
            ++FT  L A   +   ++  C +L   V++SG              Y +C  +      
Sbjct: 157 DYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDA 216

Query: 128 ---------------TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
                          T ++ GY   G + AARSVF+ +  +  V WN++IS Y  +   +
Sbjct: 217 RKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVV 276

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH----RIACEMGFVESVYVG 228
           EA +L+ RM  E V LD FT   +LS+CA+ G    G  +H    R+        ++ V 
Sbjct: 277 EAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVN 336

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           NALV +Y+KCGN+  A  +F  M+ +DV+SWN+++ GY      D+A+  F++M     +
Sbjct: 337 NALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMP----Y 392

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            + ++++ ++ G  H G  E+ ++ F+ M +  ++KP    Y   +   G  G L+
Sbjct: 393 KNELSWMVMVSGYVHGGFSEDALKLFNRMRAE-DVKPCDYTYAGAISACGELGSLK 447



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 139/315 (44%), Gaps = 57/315 (18%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYTQASFHLEALKLY 178
           + C V +T+L+  YAA G + AA S FD +P+  RD V  N++IS Y +AS    A+ ++
Sbjct: 85  DPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVF 144

Query: 179 ERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM---GFVESVYVGNALVDM 234
             +     +  D ++   LLS+  H+  +++     ++ C +   G    + V NALV +
Sbjct: 145 RSLLASGSLRPDDYSFTALLSAAGHLPNISVR-HCAQLQCSVLKSGAGGVLSVSNALVAL 203

Query: 235 YAKCGNLDS---AFCVFSRMRKRDVLSWNSMIVGYGVHGRGD------------------ 273
           Y KC  L++   A  V   M  +D L+W +M+VGY    RGD                  
Sbjct: 204 YMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYV--RRGDVGAARSVFEEVDVKFDVV 261

Query: 274 ---------------EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
                          EA   F++M++     D  TF  +L  C++ G    G +  H  +
Sbjct: 262 WNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHG-KSVHGQI 320

Query: 319 SRY--NLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-----GSCK 369
           +R   N  P   +     LV LY + G +  A  + +     D V W T+L      SC 
Sbjct: 321 TRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSC- 379

Query: 370 IHRNVEI-GEIAMKN 383
           + + VE+  E+  KN
Sbjct: 380 LDKAVEVFEEMPYKN 394



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 108/233 (46%), Gaps = 3/233 (1%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           SS L  A  +F ++      +W  ++  +        A+  +N M  A   +P  +T+  
Sbjct: 377 SSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRM-RAEDVKPCDYTYAG 435

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            + AC  + +L   ++LHG +++ G+E        L+  YA  G ++ A  +F  MP  D
Sbjct: 436 AISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNID 495

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLH 213
            VSWN++IS   Q     EAL+L++RM  E +  D  + + +L++C H G ++ G  +  
Sbjct: 496 SVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFE 555

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSMIVG 265
            +  + G +        L+D+  + G +  A  +   M      S W +++ G
Sbjct: 556 SMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSG 608


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 197/567 (34%), Positives = 310/567 (54%), Gaps = 48/567 (8%)

Query: 14  KARQAHEIHGEWLLNSYAISVSSSLSYAQLL---------------FNQIQNPQTQAWNS 58
           K ++AHE+  +       I    S+SY  +L               FN++      +WN+
Sbjct: 120 KVKEAHELFDK-------IPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNT 172

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           LI  FAQ+   +Q  F     L + +   +  +++  +        L   +EL+    ++
Sbjct: 173 LISGFAQN-GQMQKAFD----LFSVMPEKNGVSWSAMISGYVEHGDLEAAEELY----KN 223

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
              + VVV T ++ GY   G +E A  +F  M  ++LV+WNS+I+ Y +     + LK++
Sbjct: 224 VGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVF 283

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
           + M    V  +  +L  +L  C+++ AL +G  +H++  +    +      +L+ MY KC
Sbjct: 284 KTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKC 343

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G+LDSA+ +F  M ++DV++WN+MI GY  HG G +A+  F +M      PD ITF+ ++
Sbjct: 344 GDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVI 403

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C+H G V+ GV+YF  M   + ++    HY C++DL GRAG+L++A+ +I    P  P
Sbjct: 404 LACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIK-EMPFTP 462

Query: 359 --VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
              ++ TLLG+C+IH+N+++ E A +NL+ L+  SA  YV LA IYA T   + VA+ RK
Sbjct: 463 HAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRK 522

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
           ++K + +   PG+SWIEI +  H+F   D+ HP+   I++KL E+  + K  GY  D  L
Sbjct: 523 MMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPD--L 580

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
                   E+  EK   +HSEKLAIAFGL  T  GT +R+ KNLR            S  
Sbjct: 581 EFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAI 640

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             R++IVRD  R+HHFR+G CSCGDYW
Sbjct: 641 EKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 147/348 (42%), Gaps = 64/348 (18%)

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHL-EALKLYERMRFEDVGLDGFTLVC--- 195
           +E+AR+VF+ M  R  V+WN+++S YT+ +  + EA +L++++   D       LVC   
Sbjct: 89  LESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLR 148

Query: 196 ------------------------LLSSCAHVGALNMGIFLHRIACEM----------GF 221
                                   L+S  A  G +     L  +  E           G+
Sbjct: 149 SYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGY 208

Query: 222 VE-----------------SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           VE                 SV V  A++  Y K G ++ A  +F RM  +++++WNSMI 
Sbjct: 209 VEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIA 268

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GY  + R ++ +  FK M+ +   P+ ++   +L GCS+   +  G +  H +VS+  L 
Sbjct: 269 GYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQ-MHQLVSKSPLS 327

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
                   L+ +Y + G L+ A ++       D + W  ++     H     G  A+   
Sbjct: 328 KDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQH---GAGRKALHLF 384

Query: 385 VQLEAAS-AGDYV-LLATIYACTKD---EEGVARTRKLIKSNGIKTTP 427
            ++   +   D++  +A I AC      + GV   + + K  GI+  P
Sbjct: 385 DKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKP 432



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 12/158 (7%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY-GVHGRGDEAISFFKQMLMAGF 287
           N  +  + +  +L+SA  VF +M  R  ++WN+M+ GY  V G+  EA   F ++     
Sbjct: 77  NKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIP---- 132

Query: 288 HPDSITF-LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
            PDS+++ + L+C     G V+  + +F+ M  +      I  +  L+  + + G+++KA
Sbjct: 133 EPDSVSYNIMLVCYLRSYG-VKAALAFFNKMPVK-----DIASWNTLISGFAQNGQMQKA 186

Query: 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            ++ +     + V W  ++     H ++E  E   KN+
Sbjct: 187 FDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNV 224


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 193/537 (35%), Positives = 299/537 (55%), Gaps = 21/537 (3%)

Query: 21  IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           + G  LLN YA     SL  A+ +F ++       W +LI  ++Q   P  A+ ++N ML
Sbjct: 96  VMGNTLLNMYA--KCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQML 153

Query: 81  MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
               S P+ FT +  +KA    +      +LHGF ++ G++  V V + L+  Y   G++
Sbjct: 154 RFGYS-PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLM 212

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
           + A+ VFD +  R+ VSWN++I+ + + S   +AL+L++ M  +      F+   L  +C
Sbjct: 213 DDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGAC 272

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
           +  G L  G ++H    + G     + GN L+DMYAK G++  A  +F R+ KRDV+SWN
Sbjct: 273 SSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWN 332

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           S++  Y  HG G EA+ +F++M   G  P+ I+FL +L  CSH GL++EG  Y+ +M  +
Sbjct: 333 SLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELM-KK 391

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGE 378
             + P   HY  +VDL GRAG L +AL  I    P +P   +W+ LL +C++H+N E+G 
Sbjct: 392 DGIVPEAWHYVTVVDLLGRAGDLNRALRFIE-EMPIEPTAAIWKALLNACRMHKNTELGA 450

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
            A +++ +L+    G +V+L  IYA        AR RK +K +G+K  P  SW+EI N +
Sbjct: 451 YAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAI 510

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           H FV +D+ HP  + I RK EE++ + K +GY  D S V V     E   E +  YHSEK
Sbjct: 511 HMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQER--EVNLQYHSEK 568

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDG 543
           +A+AF L  TP G+++ I KN+R            S    R++IVRD  R+HHF+D 
Sbjct: 569 IALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDA 625



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 168/347 (48%), Gaps = 19/347 (5%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR--------PD 88
           +L +   L +Q++   ++  NSL    ++        F  N +L+ + S          D
Sbjct: 2   ALRFPPRLLSQLK--LSRRLNSLPAPVSEDSEDESLKFPSNDLLLRTSSNDLEGSYIPAD 59

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
              +   LK C   K L + + +H  +++S +   +V+   L+  YA  G +E AR VF+
Sbjct: 60  RRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFE 119

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            MP+RD V+W ++IS Y+Q     +AL  + +M       + FTL  ++ + A       
Sbjct: 120 KMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCC 179

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G  LH    + GF  +V+VG+AL+D+Y + G +D A  VF  +  R+ +SWN++I G+  
Sbjct: 180 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 239

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
               ++A+  F+ ML  GF P   ++  L   CS  G +E+G       V  Y +K G K
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-----KWVHAYMIKSGEK 294

Query: 329 HYG----CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
                   L+D+Y ++G +  A ++ +  +  D V W +LL +   H
Sbjct: 295 LVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 341


>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
          Length = 660

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 205/494 (41%), Positives = 284/494 (57%), Gaps = 27/494 (5%)

Query: 81  MASLSRP-DTFTFTFTLKAC-----ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGY 134
           M  L  P D++++   LKAC       V A    +E+H   +R GY     V+T L+  Y
Sbjct: 171 MGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTLIDCY 230

Query: 135 AANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM--RFEDVGLDGFT 192
           A  G++  A SVF  MPER++VSW ++I CY +     +A+ L++ M    ED+  +  T
Sbjct: 231 AKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVT 290

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM- 251
           +VC+L + A V AL  G  LH      GF   V V NAL+ MY KCG L++   +F  + 
Sbjct: 291 IVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLIG 350

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
            ++DV+SWN++I GYG+HG G EA+  F+ M   G  P+ ITF+ +L  CSH GLV+EG 
Sbjct: 351 HRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLVDEGK 410

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS--SPSDPVLWRTLLGSCK 369
             F  MV  YN+ P  +HY C+VDL GRAG L++A+E+I      PS P +W +LLG+C+
Sbjct: 411 RLFESMVD-YNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPS-PQVWGSLLGACR 468

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           IHR+VE  E+A   L  LE  +AG+YVLLA IYA  K    V   + L++ + ++  PG 
Sbjct: 469 IHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHALEKVPGC 528

Query: 430 SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
           SWIE+  ++H FV  D  +P  + +   + E + + K  GY  D    AV     E+  E
Sbjct: 529 SWIEVKKRLHMFVSVDNKNPQIEELQALIGEFVTQMKNDGYVPDTG--AVLYDIEEEEKE 586

Query: 490 KSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRY 537
           K    HSEKLA+AFGL  T  G  +RI KNLR            S    R++IVRD  R+
Sbjct: 587 KILLGHSEKLAVAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAEREIIVRDVNRF 646

Query: 538 HHFRDGLCSCGDYW 551
           HHFRDG+CSCGDYW
Sbjct: 647 HHFRDGICSCGDYW 660



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 120/254 (47%), Gaps = 9/254 (3%)

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           +ST L+  YA+ G + AAR VFD  P + +  WN+++     A    EAL     M    
Sbjct: 116 LSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALARLADMGRLR 175

Query: 186 VGLDGFTL-----VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           V +D ++       C+ +S +HV A  +   +H  A   G+    +V   L+D YAK G 
Sbjct: 176 VPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTLIDCYAKLGI 235

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA--GFHPDSITFLGLL 298
           +  A  VF+ M +R+V+SW +MI  Y  + R  +AI  F++M+ +     P+S+T + +L
Sbjct: 236 VSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVTIVCIL 295

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSD 357
              +    + +G +  H  + R      +     L+ +Y + G LE    + +      D
Sbjct: 296 HAFAGVNALGQG-KLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLIGHRKD 354

Query: 358 PVLWRTLLGSCKIH 371
            V W TL+    +H
Sbjct: 355 VVSWNTLISGYGMH 368



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 12/161 (7%)

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
           R+  +  F    ++   L+D YA  G L +A  VF     + +  WN+++    +   G+
Sbjct: 103 RLKADPVFRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGE 162

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGC-----SH---QGLVEEGVEYFHMMVSRYNLKP 325
           EA++    M       DS ++   L  C     SH     LV E   + H +   Y L  
Sbjct: 163 EALARLADMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVRE--IHAHAVRRGYGLHT 220

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            +     L+D Y + G +  A  V  T    + V W  ++G
Sbjct: 221 HVA--TTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIG 259


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 199/543 (36%), Positives = 294/543 (54%), Gaps = 19/543 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA      L  A+ LF  +      +WN++I  +A+     +A+  Y  M   
Sbjct: 368 GNALISMYA--RCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSE 425

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            + +P   TF   L AC    A    + +H  ++RSG +    ++  LM  Y   G +  
Sbjct: 426 GV-KPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLME 484

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A++VF+    RD++SWNS+I+ + Q   +  A KL++ M+ E++  D  T   +LS C +
Sbjct: 485 AQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKN 544

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
             AL +G  +H    E G    V +GNAL++MY +CG+L  A  VF  ++ RDV+SW +M
Sbjct: 545 PEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAM 604

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFH-PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           I G    G   +AI  F QM   GF  PD  TF  +L  C+H GLV EG + F  M S Y
Sbjct: 605 IGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEY 664

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIA 380
            + P I+HYGCLV L GRA + ++A  +IN    P D  +W TLLG+C+IH N+ + E A
Sbjct: 665 GVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHA 724

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
             N ++L A +   Y+LL+ +YA     + VA+ R++++  GI+  PG SWIE+ N +H+
Sbjct: 725 ANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHE 784

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           F+  D+SHP+   IY +L+ +    +  GY  D   V      +    E S   HSE+LA
Sbjct: 785 FIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQ--ETSLCTHSERLA 842

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           IA+GL  TP GT +RI KNLR            S    R++I RD  R+H F++G CSC 
Sbjct: 843 IAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCE 902

Query: 549 DYW 551
           DYW
Sbjct: 903 DYW 905



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 186/367 (50%), Gaps = 13/367 (3%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVSSSL----------SYAQLLFNQIQNPQTQAWNSLIR 61
           L++ ++ H++  E  LNS  I V ++L            A+  F  I +     +N+LI 
Sbjct: 245 LDEGKRIHKLTVEEGLNS-DIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIA 303

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
           A AQ    ++A   Y  M    ++   T T+   L AC   KAL   + +H  +   G+ 
Sbjct: 304 ALAQHGHNVEAFEQYYRMRSDGVALNRT-TYLSILNACSTSKALEAGKLIHSHISEDGHS 362

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
             V +   L+  YA  G +  AR +F  MP+RDL+SWN+II+ Y +     EA++LY++M
Sbjct: 363 SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM 422

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           + E V     T + LLS+CA+  A   G  +H      G   + ++ NAL++MY +CG+L
Sbjct: 423 QSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSL 482

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
             A  VF   + RDV+SWNSMI G+  HG  + A   F++M      PD+ITF  +L GC
Sbjct: 483 MEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGC 542

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
            +   +E G +  H  ++   L+  +     L+++Y R G L+ A  V ++    D + W
Sbjct: 543 KNPEALELGKQ-IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSW 601

Query: 362 RTLLGSC 368
             ++G C
Sbjct: 602 TAMIGGC 608



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 210/446 (47%), Gaps = 22/446 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F  I      ++N+++  +AQ     + +  +  M    +S PD  T+   L 
Sbjct: 179 LPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGIS-PDKVTYINLLD 237

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A      L++ + +H   +  G    + V T L+      G +++A+  F  + +RD+V 
Sbjct: 238 AFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVV 297

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           +N++I+   Q   ++EA + Y RMR + V L+  T + +L++C+   AL  G  +H    
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHIS 357

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           E G    V +GNAL+ MYA+CG+L  A  +F  M KRD++SWN++I GY       EA+ 
Sbjct: 358 EDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMR 417

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG----CL 333
            +KQM   G  P  +TFL LL  C++     +G      M+    L+ GIK  G     L
Sbjct: 418 LYKQMQSEGVKPGRVTFLHLLSACANSSAYADG-----KMIHEDILRSGIKSNGHLANAL 472

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           +++Y R G L +A  V   +   D + W +++     H + E      + +   E     
Sbjct: 473 MNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEP-- 530

Query: 394 DYVLLATIYACTKDEEGVARTRKL---IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           D +  A++ +  K+ E +   +++   I  +G++       + +GN +    +   S  D
Sbjct: 531 DNITFASVLSGCKNPEALELGKQIHGRITESGLQLD-----VNLGNALINMYIRCGSLQD 585

Query: 451 ADMIYRKLE--EIMHRAKFIGYTKDE 474
           A  ++  L+  ++M     IG   D+
Sbjct: 586 ARNVFHSLQHRDVMSWTAMIGGCADQ 611



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 179/392 (45%), Gaps = 16/392 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  +F ++      +WNSLI  +AQ     +A   +  M  A    P+  T+   L AC 
Sbjct: 81  AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI-PNKITYISILTACY 139

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               L   +++H  +I++GY+R   V  +L+  Y   G +  AR VF  +  RD+VS+N+
Sbjct: 140 SPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNT 199

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  Y Q ++  E L L+ +M  E +  D  T + LL +      L+ G  +H++  E G
Sbjct: 200 MLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG 259

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               + VG ALV M  +CG++DSA   F  +  RDV+ +N++I     HG   EA   + 
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYY 319

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M   G   +  T+L +L  CS    +E G +  H  +S       ++    L+ +Y R 
Sbjct: 320 RMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARC 378

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE-IAMKNLVQLEAASAGDYVLLA 399
           G L KA E+  T    D + W  ++      R  + GE + +   +Q E    G    L 
Sbjct: 379 GDLPKARELFYTMPKRDLISWNAIIAG--YARREDRGEAMRLYKQMQSEGVKPGRVTFLH 436

Query: 400 TIYACTKDE---------EGVARTRKLIKSNG 422
            + AC             E + R+   IKSNG
Sbjct: 437 LLSACANSSAYADGKMIHEDILRSG--IKSNG 466



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 169/355 (47%), Gaps = 10/355 (2%)

Query: 86  RP---DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
           RP   D  T+   L+ C R + L + + +H  ++ +G    + +S  L+  Y     +  
Sbjct: 21  RPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLD 80

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VF  MP RD++SWNS+ISCY Q  F  +A +L+E M+      +  T + +L++C  
Sbjct: 81  AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
              L  G  +H    + G+     V N+L+ MY KCG+L  A  VF+ +  RDV+S+N+M
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTM 200

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           +  Y       E +  F QM   G  PD +T++ LL   +   +++EG +  H +     
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG-KRIHKLTVEEG 259

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEIAM 381
           L   I+    LV +  R G ++ A +     +  D V++  L+ +   H  NVE  E   
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYY 319

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
           +  ++ +  +      L+ + AC+  +       KLI S+ I      S ++IGN
Sbjct: 320 R--MRSDGVALNRTTYLSILNACSTSK--ALEAGKLIHSH-ISEDGHSSDVQIGN 369


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/523 (35%), Positives = 298/523 (56%), Gaps = 20/523 (3%)

Query: 44   LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
            +F    N    +WN+L+  F  + +    +  +N ML    + P+ +TF   L++C  + 
Sbjct: 488  VFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFN-PNMYTFISILRSCSSLS 546

Query: 104  ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
             ++  +++H  ++++  +    V T L+  YA N  +E A ++F+ + +RDL +W  I++
Sbjct: 547  DVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVA 606

Query: 164  CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
             Y Q     +A+K + +M+ E V  + FTL   LS C+ +  L+ G  LH +A + G   
Sbjct: 607  GYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSG 666

Query: 224  SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
             ++V +ALVDMYAKCG ++ A  VF  +  RD +SWN++I GY  HG+G +A+  F+ ML
Sbjct: 667  DMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAML 726

Query: 284  MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
              G  PD +TF+G+L  CSH GL+EEG ++F+ +   Y + P I+HY C+VD+ GRAGK 
Sbjct: 727  DEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKF 786

Query: 344  EKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
             +    I      S+ ++W T+LG+CK+H N+E GE A   L +LE     +Y+LL+ ++
Sbjct: 787  HEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMF 846

Query: 403  ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
            A     + V   R L+ + G+K  PG SW+E+  QVH F+  D SHP    I+ KL+++ 
Sbjct: 847  AAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLH 906

Query: 463  HRAKFIGYTK--DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
             +   +GYT   D  L  VS    ++ L     YHSE+LA+AF L +T    ++RI KNL
Sbjct: 907  QKLMSVGYTPNTDHVLHNVSDREKQELL----FYHSERLALAFALLSTSTRKTIRIFKNL 962

Query: 521  R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R            S   +++L+VRD   +HHF++G CSC ++W
Sbjct: 963  RICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 182/386 (47%), Gaps = 9/386 (2%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA      +  A+ +F  +      +WN+L+  FAQ     + +  +  M  +
Sbjct: 267 GSALVDLYA--KCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGS 324

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            ++    FT +  LK C     L   Q +H   IR G E    +S  L+  Y+  G+   
Sbjct: 325 EINF-SKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGD 383

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VF  + + D+VSW++II+C  Q     EA ++++RMR   V  + FTL  L+S+   
Sbjct: 384 ALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATD 443

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +G L  G  +H   C+ GF     V NALV MY K G++     VF     RD++SWN++
Sbjct: 444 LGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNAL 503

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           + G+  +   D  +  F QML  GF+P+  TF+ +L  CS    V+ G +  H  + + +
Sbjct: 504 LSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQV-HAQIVKNS 562

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           L         LVD+Y +   LE A  + N     D   W  ++     +     GE A+K
Sbjct: 563 LDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAG---YAQDGQGEKAVK 619

Query: 383 NLVQL--EAASAGDYVLLATIYACTK 406
             +Q+  E     ++ L +++  C++
Sbjct: 620 CFIQMQREGVKPNEFTLASSLSGCSR 645



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 180/387 (46%), Gaps = 8/387 (2%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F +I++P   +W+++I    Q     +A   +  M  + +  P+ FT    + A   + 
Sbjct: 387 VFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVI-PNQFTLASLVSAATDLG 445

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L   + +H  V + G+E    V   L+  Y   G ++    VF+    RDL+SWN+++S
Sbjct: 446 DLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLS 505

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            +         L+++ +M  E    + +T + +L SC+ +  +++G  +H    +     
Sbjct: 506 GFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDG 565

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           + +VG ALVDMYAK   L+ A  +F+R+ KRD+ +W  ++ GY   G+G++A+  F QM 
Sbjct: 566 NDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQ 625

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  P+  T    L GCS    ++ G +  H M  +      +     LVD+Y + G +
Sbjct: 626 REGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCV 684

Query: 344 EKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV-LLATIY 402
           E A  V +     D V W T++  C   ++ + G+        L+  +  D V  +  + 
Sbjct: 685 EDAEVVFDGLVSRDTVSWNTII--CGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLS 742

Query: 403 ACTK---DEEGVARTRKLIKSNGIKTT 426
           AC+     EEG      L K  GI  T
Sbjct: 743 ACSHMGLIEEGKKHFNSLSKIYGITPT 769



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 195/443 (44%), Gaps = 28/443 (6%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA     S +YA  +F +I      +W +LI  F        A+  +  M    + 
Sbjct: 169 LVNVYA--KCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGV- 225

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
             + FT+   LKAC     L   +++H   I+ G    + V + L+  YA  G +  A  
Sbjct: 226 EANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAER 285

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF  MP+++ VSWN++++ + Q     + L L+ RM   ++    FTL  +L  CA+ G 
Sbjct: 286 VFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGN 345

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H +A  +G     ++   LVDMY+KCG    A  VF R+   DV+SW+++I  
Sbjct: 346 LRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITC 405

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
               G+  EA   FK+M  +G  P+  T   L+   +  G +  G E  H  V +Y  + 
Sbjct: 406 LDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYG-ESIHACVCKYGFEY 464

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
                  LV +Y + G ++    V   ++  D + W  LL     +   + G + + N +
Sbjct: 465 DNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTG-LRIFNQM 523

Query: 386 QLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDD 445
             E  +   Y  ++ + +C+                        S +++G QVH  +V +
Sbjct: 524 LAEGFNPNMYTFISILRSCSS----------------------LSDVDLGKQVHAQIVKN 561

Query: 446 KSHPDADMIYRKLEEIMHRAKFI 468
            S    D +   L ++  + +F+
Sbjct: 562 -SLDGNDFVGTALVDMYAKNRFL 583



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 137/270 (50%), Gaps = 1/270 (0%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+ C     LN+ + +HG VI+SG      +  +L+  YA  G    A  VF  +PERD+
Sbjct: 135 LRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDV 194

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW ++I+ +    +   A+ L+  MR E V  + FT    L +C+    L  G  +H  
Sbjct: 195 VSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAE 254

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A ++G    ++VG+ALVD+YAKCG +  A  VF  M K++ +SWN+++ G+   G  ++ 
Sbjct: 255 AIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKV 314

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           ++ F +M  +  +    T   +L GC++ G +  G +  H +  R   +       CLVD
Sbjct: 315 LNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG-QIVHSLAIRIGCELDEFISCCLVD 373

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y + G    AL+V       D V W  ++
Sbjct: 374 MYSKCGLAGDALKVFVRIEDPDVVSWSAII 403



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 1/170 (0%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L +CA  G LN G  +H    + G     ++ N+LV++YAKCG+ + A  VF  + +RD
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           V+SW ++I G+   G G  A++ F +M   G   +  T+   L  CS    +E G +  H
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQV-H 252

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
               +      +     LVDLY + G++  A  V       + V W  LL
Sbjct: 253 AEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALL 302


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 191/529 (36%), Positives = 293/529 (55%), Gaps = 19/529 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A+ LF+ +      +WNS+I A+ Q+ +P +A+  +  ML   + +P   +    L
Sbjct: 286 SLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGV-KPTDVSVMGAL 344

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  +  L + + +H   +  G +R V V  +L+  Y     ++ A S+F  +  R LV
Sbjct: 345 HACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLV 404

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I  + Q    ++AL  + +MR   V  D FT V ++++ A +   +   ++H + 
Sbjct: 405 SWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVV 464

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                 ++V+V  ALVDMYAKCG +  A  +F  M +R V +WN+MI GYG HG G  A+
Sbjct: 465 MRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAAL 524

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F++M      P+ +TFL ++  CSH GLVE G++ F+MM   Y+++  + HYG +VDL
Sbjct: 525 ELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDL 584

Query: 337 YGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG+L +A + I    P  P   ++  +LG+C+IH+NV   E A + L +L     G 
Sbjct: 585 LGRAGRLNEAWDFI-MQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGY 643

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           +VLLA IY      E V + R  +   G++ TPG S +EI N+VH F     +HPD+  I
Sbjct: 644 HVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKI 703

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y  LE+++   K  GY  D +LV        D  E+  + HSEKLAI+FGL  T  GT++
Sbjct: 704 YAFLEKLICHIKEAGYVPDTNLVL---GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTI 760

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + KNLR            S+   R+++VRD  R+HHF++G CSCGDYW
Sbjct: 761 HVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 209/404 (51%), Gaps = 19/404 (4%)

Query: 16  RQAHEIHGEWLLNSYAISVSS------------SLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           R   EIHG  + + +++ + +             ++ A+ +F+++      +WN+++  +
Sbjct: 152 RVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGY 211

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           +Q+     A+     M   +L +P   T    L A   ++ ++  +E+HG+ +RSG++  
Sbjct: 212 SQNGMARMALEMVKSMCEENL-KPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSL 270

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V +ST L+  YA  G +E AR +FD M ER++VSWNS+I  Y Q     EA+ ++++M  
Sbjct: 271 VNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD 330

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           E V     +++  L +CA +G L  G F+H+++ E+G   +V V N+L+ MY KC  +D+
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDT 390

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F +++ R ++SWN+MI+G+  +GR  +A+++F QM      PD+ T++ ++   + 
Sbjct: 391 AASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAE 450

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
             +     ++ H +V R  L   +     LVD+Y + G +  A  + +  S      W  
Sbjct: 451 LSITHHA-KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNA 509

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACT 405
           ++     H     G+ A++   +++  +        L+ I AC+
Sbjct: 510 MIDGYGTH---GFGKAALELFEEMQKGTIKPNGVTFLSVISACS 550



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 170/329 (51%), Gaps = 2/329 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A  +F  I +     ++++++ FA+     +A+ ++  M    +  P  + FT+ L
Sbjct: 84  SVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDV-EPVVYNFTYLL 142

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           K C     L   +E+HG +++SG+   +   T L   YA    +  AR VFD MPERDLV
Sbjct: 143 KVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLV 202

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN+I++ Y+Q      AL++ + M  E++     T+V +L + + +  +++G  +H  A
Sbjct: 203 SWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYA 262

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              GF   V +  ALVDMYAKCG+L++A  +F  M +R+V+SWNSMI  Y  +    EA+
Sbjct: 263 MRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAM 322

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F++ML  G  P  ++ +G L  C+  G +E G  + H +     L   +     L+ +
Sbjct: 323 LIFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISM 381

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           Y +  +++ A  +         V W  ++
Sbjct: 382 YCKCKEVDTAASMFGKLQSRTLVSWNAMI 410



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 144/305 (47%), Gaps = 2/305 (0%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
           ER  +L + +++   V ++G  +     T L+  +   G ++ A  VF+ +  +  V ++
Sbjct: 45  ERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYH 104

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           +++  + + S   +AL+ + RMR++DV    +    LL  C     L +G  +H +  + 
Sbjct: 105 TMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS 164

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           GF   ++    L +MYAKC  ++ A  VF RM +RD++SWN+++ GY  +G    A+   
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMV 224

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           K M      P  IT + +L   S   L+  G E  H    R      +     LVD+Y +
Sbjct: 225 KSMCEENLKPSFITIVSVLPAVSALRLISVGKE-IHGYAMRSGFDSLVNISTALVDMYAK 283

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            G LE A ++ +     + V W +++ +   + N +   +  + ++  E     D  ++ 
Sbjct: 284 CGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD-EGVKPTDVSVMG 342

Query: 400 TIYAC 404
            ++AC
Sbjct: 343 ALHAC 347


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 197/559 (35%), Positives = 290/559 (51%), Gaps = 51/559 (9%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+  F +I       WN++I  + QS    +A   +  M+   +  PD FTFT  L AC 
Sbjct: 249 ARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIP-PDEFTFTSLLSACA 307

Query: 101 RVKALNKCQELHGFVIRSGY----ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
                   + +HG  IR       E  + V+  L+  Y+ +G I  A  +FD+M  +D+V
Sbjct: 308 NAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVV 367

Query: 157 SWNSIISCYTQAS-------------------------------FHLEALKLYERMRFED 185
           SWN+I+S Y ++                                   +ALKL+ +MR ED
Sbjct: 368 SWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSED 427

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           V    +T    +++C  +GAL  G  LH    + GF  S   GNAL+ MYA+CG +  A 
Sbjct: 428 VKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDAR 487

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  M   D +SWN+MI   G HG G EA+  F QM+  G +PD I+FL +L  C+H G
Sbjct: 488 LVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAG 547

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTL 364
           LV++G +YF  M   + + PG  HY  L+DL GRAG++ +A ++I T      P +W  +
Sbjct: 548 LVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAI 607

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
           L  C+I+ ++E+G  A   L ++     G Y+LL+  Y+        AR RKL++  G+K
Sbjct: 608 LSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVK 667

Query: 425 TTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSS 484
             PG SWIE+GN+VH F+V D  HPDA  +YR LE +  + + +GY  D        +  
Sbjct: 668 KEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPH 727

Query: 485 EDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVR 532
           E   E     HSE+LA++FGL   P G ++ ++KNL+            S A  R+++VR
Sbjct: 728 EK--EYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVR 785

Query: 533 DRVRYHHFRDGLCSCGDYW 551
           D  R+HHF+DG CSCG+YW
Sbjct: 786 DVRRFHHFKDGECSCGNYW 804



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 169/365 (46%), Gaps = 56/365 (15%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+++YA++     S A      +    T   N++I AFA++     A+  +  +L +  S
Sbjct: 95  LVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDS 154

Query: 86  -RPDTFTFTFTLKACERVK--ALNKCQELHGFVIRSGYERCVVVSTNLMRGYA---ANGV 139
            RPD ++FT  L A  ++   A++ C +LH  V + G    + VS  L+  Y    A GV
Sbjct: 155 LRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGV 214

Query: 140 IEAARSVFDNMPERDLVSW-------------------------------NSIISCYTQA 168
              AR V D MPE+D ++W                               N++IS Y Q+
Sbjct: 215 TRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQS 274

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE----- 223
               EA +L+ RM  + +  D FT   LLS+CA     N G FLH  +    F+      
Sbjct: 275 GMCAEAFELFRRMVSKRIPPDEFTFTSLLSACA-----NAGFFLHGKSVHGQFIRLQPDF 329

Query: 224 ----SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
               ++ V NALV +Y+K G +  A  +F  M  +DV+SWN+++ GY   G  D A   F
Sbjct: 330 VPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIF 389

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           K+M     +   ++++ ++ G  H GL E+ ++ F+ M S  ++KP    Y   V   G 
Sbjct: 390 KEMP----YKSELSWMVMVSGYVHGGLAEDALKLFNQMRSE-DVKPCDYTYAGAVAACGE 444

Query: 340 AGKLE 344
            G L+
Sbjct: 445 LGALK 449



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 125/284 (44%), Gaps = 43/284 (15%)

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMR 182
           V +T+L+  YA  G +  + + FD++P   RD V  N++IS + +AS    A+ ++  + 
Sbjct: 90  VAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLL 149

Query: 183 FEDVGL--DGFTLVCLLSSCA--HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             D  L  D ++   LLS+    H  A++    LH    ++G    + V NAL+ +Y KC
Sbjct: 150 ASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKC 209

Query: 239 ---GNLDSAFCVFSRMRKRDVLSWNSMIVGY----GVH---------------------- 269
              G    A  V   M ++D L+W +++VG+     VH                      
Sbjct: 210 DAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMIS 269

Query: 270 -----GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY---FHMMVSRY 321
                G   EA   F++M+     PD  TF  LL  C++ G    G      F  +   +
Sbjct: 270 GYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDF 329

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             +  +     LV LY ++GK+  A ++ ++ +  D V W T+L
Sbjct: 330 VPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTIL 373



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 109/238 (45%), Gaps = 3/238 (1%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  L  A  +F ++      +W  ++  +        A+  +N M    + +P  +T+  
Sbjct: 379 SGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDV-KPCDYTYAG 437

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            + AC  + AL   ++LH  +++ G+E        L+  YA  G ++ AR VF  MP  D
Sbjct: 438 AVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVD 497

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLH 213
            VSWN++IS   Q     EAL+L+++M  + +  D  + + +L++C H G ++ G  +  
Sbjct: 498 SVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFE 557

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSMIVGYGVHG 270
            +  + G          L+D+  + G +  A  +   M      + W +++ G  ++G
Sbjct: 558 SMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRING 615


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 207/581 (35%), Positives = 302/581 (51%), Gaps = 77/581 (13%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM----------LMASLSR---- 86
           A++LF+QI  P   +WN++I  + Q+    +A   +N M          ++A  +R    
Sbjct: 340 AKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRS 399

Query: 87  ----------------PDTFTFTFTLKACERVKALNKCQELHGFVIRSG----------- 119
                           P   + T +  AC  ++AL   +++H   +++G           
Sbjct: 400 EQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNAL 459

Query: 120 ----------------YERCVVVST----NLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
                           ++R  V  T    + M     N + + AR VF+NMP  D+VSW 
Sbjct: 460 ITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWT 519

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           +IIS   QA    EA++++  M  E    +   L  LL    ++GA  +G  +H IA ++
Sbjct: 520 TIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKL 579

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G    + V NALV MY KC + DS   VF  M +RD+ +WN++I GY  HG G EAI  +
Sbjct: 580 GMDSGLVVANALVSMYFKCSSADS-LKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMY 638

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           + M+ AG  P+ +TF+GLL  CSH GLV+EG ++F  M S Y L P ++HY C+VDL GR
Sbjct: 639 QLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGR 698

Query: 340 AGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           AG ++ A   I +     D V+W  LLG+CKIH+NVEIG  A + L  +E ++AG+YV+L
Sbjct: 699 AGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVML 758

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + IY+     + VA+ RKL+K  G+   PG SW++I N++H FV  D+ H     IY  L
Sbjct: 759 SNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATL 818

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
            E+    K  GY  D   V       E+  E S  YHSEKLA+A+GL  TP G  ++I+K
Sbjct: 819 WELYTLLKATGYVPDTDFVL--HDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMK 876

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           NLR            S    R++ VRD  R+HHFR+G CSC
Sbjct: 877 NLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 41/252 (16%)

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
             ++ GY  + ++E AR++F+ MPER+ VSW  +IS Y     H  A  ++  M  E + 
Sbjct: 161 NTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMT 220

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK---------- 237
            +   LV +LS+  H+G   +   +H +  + GF   V VG A+++ Y K          
Sbjct: 221 PEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVK 280

Query: 238 ----------------------CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
                                  G +D AF V+ R   + V S  SM+ G   +GR D+A
Sbjct: 281 FFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDA 340

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
              F Q+      P+ +++  ++ G     +V+E  + F+ M  R  +      +  ++ 
Sbjct: 341 KILFDQI----HEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTIS-----WAGMIA 391

Query: 336 LYGRAGKLEKAL 347
            Y R G+ E+AL
Sbjct: 392 GYARNGRSEQAL 403



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 138/319 (43%), Gaps = 15/319 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  +LN Y   V+  L  A   F  +       W+++I A +Q+     A   Y    + 
Sbjct: 261 GTAILNGYTKDVNM-LDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLK 319

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
           S+      + T  L    R   ++  + L   +    +E  VV    ++ GY  N +++ 
Sbjct: 320 SVP-----SRTSMLTGLARYGRIDDAKILFDQI----HEPNVVSWNAMITGYMQNEMVDE 370

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  +F+ MP R+ +SW  +I+ Y +     +AL   + +  + +     +L     +C++
Sbjct: 371 AEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSN 430

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL  G  +H +A + G   + YV NAL+ +Y K  ++ S   +F RM  +D +S+NS 
Sbjct: 431 IEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSF 490

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           +     +   DEA   F  M      PD +++  ++  C+      E VE F  M+    
Sbjct: 491 MSALVQNNLFDEARDVFNNMP----SPDVVSWTTIISACAQADQGNEAVEIFRSMLHERE 546

Query: 323 LKPGIKHYGCLVDLYGRAG 341
           L P       L+ L G  G
Sbjct: 547 L-PNPPILTILLGLSGNLG 564



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/427 (20%), Positives = 178/427 (41%), Gaps = 37/427 (8%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  +  A+ LF ++      +W  +I  +       +A   +  ML   ++ P+      
Sbjct: 170 SQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMT-PEQPNLVS 228

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN-GVIEAARSVFDNMPER 153
            L A   +      + +H  V ++G+ER VVV T ++ GY  +  ++++A   F+ M  R
Sbjct: 229 VLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAAR 288

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           +  +W++II+  +QA    +A  +Y+R   + V     +   +L+  A  G ++    L 
Sbjct: 289 NEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVP----SRTSMLTGLARYGRIDDAKILF 344

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
               E     +V   NA++  Y +   +D A  +F+RM  R+ +SW  MI GY  +GR +
Sbjct: 345 DQIHE----PNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSE 400

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK--HYG 331
           +A+   + +   G  P   +       CS+   +E G +   + V     K G +   Y 
Sbjct: 401 QALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAV-----KAGCQFNSYV 455

Query: 332 C--LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
           C  L+ LYG+   +    ++ +  +  D V + + + +   +   +       N+   + 
Sbjct: 456 CNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDV 515

Query: 390 ASAGDYVLLATIYACTKDEEG---VARTRKLIKSNGIKTTPGWSWI----------EIGN 436
            S         I AC + ++G   V   R ++    +   P  + +          ++G 
Sbjct: 516 VS-----WTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQ 570

Query: 437 QVHKFVV 443
           Q+H   +
Sbjct: 571 QIHTIAI 577



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 43/242 (17%)

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           T L+ GYA  G +  AR VFD M  R+ V+WN++++CY Q      A KL++ M   DV 
Sbjct: 99  TILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVS 158

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
                                                    N ++  Y     ++ A  +
Sbjct: 159 ---------------------------------------SWNTMLTGYCHSQLMEEARNL 179

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F RM +R+ +SW  MI GY +  +   A   F+ ML  G  P+    + +L    H G  
Sbjct: 180 FERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLG-- 237

Query: 308 EEGV-EYFHMMVSRYNLKPGIKHYGCLVDLYGR-AGKLEKALEVINTSSPSDPVLWRTLL 365
           + G+ E  H++V +   +  +     +++ Y +    L+ A++     +  +   W T++
Sbjct: 238 KPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTII 297

Query: 366 GS 367
            +
Sbjct: 298 AA 299



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           +A +    + G L  A  VF  M  RD+++WNSMI  Y  +G  D   S    +      
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLR 96

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
             +I    LL G +  G V +    F  M  R  +      +  +V  Y + G +  A +
Sbjct: 97  TGTI----LLSGYARAGRVRDARRVFDGMGVRNTVA-----WNAMVTCYVQNGDITLARK 147

Query: 349 VINTSSPSDPVLWRTLL-GSC 368
           + +     D   W T+L G C
Sbjct: 148 LFDAMPSRDVSSWNTMLTGYC 168


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/528 (35%), Positives = 299/528 (56%), Gaps = 17/528 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L  A+ + + +      +W ++I  ++QS    +A+  +  ML A   + + FT    L
Sbjct: 91  ALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAG-CKANEFTLATVL 149

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            +C   +++ + +++H  V+++ +E  + V ++L+  Y  +G I+ AR VFD +PERD V
Sbjct: 150 TSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTV 209

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           S  +IIS Y Q     EAL L+ ++    +  +  T   LL+S + + +LN G  +H + 
Sbjct: 210 SCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLI 269

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                   + + N+L+DMY+KCG L  +  VF  M +R  +SWN+M++GYG HG G E +
Sbjct: 270 LRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVV 329

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F+ M      PDS+T L +L GCSH GLV+EG++ F ++V   N    I HYGC++DL
Sbjct: 330 QLFRTM-TEEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDL 388

Query: 337 YGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GR+G+L+KAL++I +      P +W +LLG+C++H NV +GE+  + L+ +E  +AG+Y
Sbjct: 389 LGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNY 448

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V+L+ IYA     + V R RKL+  N +   P  SWI +   +H F   ++ HP    I 
Sbjct: 449 VILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDIN 508

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
            K++E+    K  G+  D  L  V     ++  E+    HSEKLAI FGL  TP G +++
Sbjct: 509 AKIKEVYVDVKAAGFVPD--LSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQ 566

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++KNLR            S  Y R++ +RD+ R+H  +DG C+CGDYW
Sbjct: 567 VMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 161/319 (50%), Gaps = 13/319 (4%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           +   + AC   +AL + +++H  ++++ Y   V ++T L+  Y   G ++ AR+V D MP
Sbjct: 44  YDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMP 103

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           ER++VSW ++IS Y+Q+  H EAL+L+ RM       + FTL  +L+SC    ++     
Sbjct: 104 ERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQ 163

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H +  +  F   ++VG++L+DMY K GN+  A  VF  + +RD +S  ++I GY   G 
Sbjct: 164 VHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGL 223

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
            DEA+  F+Q+  +G   + +TF  LL   S    +  G +  H ++ R  L   I    
Sbjct: 224 DDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYG-KQVHGLILRKELPFFIVLQN 282

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL---- 387
            L+D+Y + GKL  +  V +       + W  +L     H    IG+     +VQL    
Sbjct: 283 SLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRH---GIGQ----EVVQLFRTM 335

Query: 388 -EAASAGDYVLLATIYACT 405
            E        LLA +  C+
Sbjct: 336 TEEVKPDSVTLLAVLSGCS 354


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 310/572 (54%), Gaps = 52/572 (9%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           W +    ++  S++  A+  F+Q+      AW +++ A A+      A   ++ M   +L
Sbjct: 88  WTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAERGQMENARETFDQMPERNL 147

Query: 85  SRPDTFTFTFTLKACER---VKALNKCQE------------------LHGFVIR------ 117
                F++T  L A  R   VKA  +  +                  L G V+R      
Sbjct: 148 -----FSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFD 202

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177
           S  ER ++  T ++  YA NG +   R +F  MPERDL+SW ++++   +     E+ +L
Sbjct: 203 SMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKEL 262

Query: 178 YERMR-----FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           ++RM       + +  +  T + LL +C+ +GAL  G  +H    E GF   + V NALV
Sbjct: 263 FDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALV 322

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           + Y +CG L  A  VF  MR+RDV+SW+SMI  +   GR DEA+  + +ML  G  PD I
Sbjct: 323 NFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDI 382

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
            F+ +L  CS+ G+VE   ++F  +V    ++P ++HY C+VD+ GRAGKL  A +++  
Sbjct: 383 IFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRL 442

Query: 353 SS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
                 P+L+ T+L +CK++ +VE GE A + + +L+  ++  Y+ LA IY+  K  +  
Sbjct: 443 MPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDA 502

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
           AR RKL++  GIK  PG SWIE+ ++VH+F+  DK HP  D IY +++ +  + K  GY 
Sbjct: 503 ARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYF 562

Query: 472 KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
           +D  +V       ED  E    YHSEKLAIAFGL +TP G  LRIVKNLR          
Sbjct: 563 QDTKVVL--QDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATK 620

Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             S    R+++VRD  R+HHF++G+CSC DYW
Sbjct: 621 VISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 169/398 (42%), Gaps = 49/398 (12%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ I +  + +W  ++  +A+S     A   ++ M   SL      ++T  L A  
Sbjct: 11  ARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLG-----SWTALLSAF- 64

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
              AL+   E    +  +  ER ++  T ++   A    IE A+  FD MPERDLV+W +
Sbjct: 65  ---ALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTA 121

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG---------------- 204
           +++   +      A + +++M   ++    F+   LLS+    G                
Sbjct: 122 MLAANAERGQMENARETFDQMPERNL----FSWTSLLSAYGRSGDVKAAGRVFDSMPEWN 177

Query: 205 -----------ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
                      +L+  +   + A +      +    A++  YA  G+L     +F RM +
Sbjct: 178 LVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPE 237

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQM-----LMAGFHPDSITFLGLLCGCSHQGLVE 308
           RD++SW +M+     +   +E+   F +M     L  G  P+ +TF+ LL  CS  G + 
Sbjct: 238 RDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALA 297

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS- 367
           EG +  H  V+       +     LV+ YGR G L  A  V +     D + W +++ + 
Sbjct: 298 EGRK-IHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAF 356

Query: 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
            +  R  E  E+  + L   E     D + ++ ++AC+
Sbjct: 357 AQRGRVDEAMELYHRMLS--EGTLPDDIIFISVLFACS 392



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 48/228 (21%)

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G +E AR +FD + +RD  SW  ++S Y ++     A  +++RM    +G          
Sbjct: 6   GCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLG---------- 55

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
                                           AL+  +A  G+ + A  +F  M++RD++
Sbjct: 56  -----------------------------SWTALLSAFALSGHHEEAKTLFDTMQERDLI 86

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +W  M+         ++A   F QM       D + +  +L   + +G +E   E F  M
Sbjct: 87  AWTIMLTVLATFSNIEDAKYHFDQMP----ERDLVAWTAMLAANAERGQMENARETFDQM 142

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             R      +  +  L+  YGR+G ++ A  V ++    + V W  +L
Sbjct: 143 PER-----NLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAML 185


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/563 (33%), Positives = 313/563 (55%), Gaps = 47/563 (8%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
            + + A+S  + L YA  + ++   P   A NS+IRA  +S  P ++  +Y+ +L +   
Sbjct: 52  FVKAVALSDHTYLDYANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNG 111

Query: 86  -RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA-- 142
            +PD +T  F ++AC  +       ++HG  IR G++    V T L+  YA  G +++  
Sbjct: 112 LKPDNYTVNFLVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCH 171

Query: 143 -----------------------------ARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
                                        AR +F+ MPE+D ++WN++IS Y Q     E
Sbjct: 172 KVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESRE 231

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           AL L+  M+ E V ++G +++ +LS+C  +GAL+ G + H          +V +G  LVD
Sbjct: 232 ALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVD 291

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           +YAKCG++D A  VF  M +++V +W+S + G  ++G G++ +  F  M   G  P+++T
Sbjct: 292 LYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVT 351

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT- 352
           F+ +L GCS  G V+EG ++F  M + + ++P + HYGCLVDLY RAG+LE A+ +I   
Sbjct: 352 FVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQM 411

Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
              +   +W +LL + ++++N+E+G +A K +++LE ++ G YVLL+ IYA + D + V+
Sbjct: 412 PMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVS 471

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
             R+ +KS G++  PG S +E+  +VH+F V DKSHP  + I    ++I  R +  GY  
Sbjct: 472 HVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKA 531

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           D + V       E   E +   HSEK AIAFG+ +      +RIVKNLR           
Sbjct: 532 DTTPVMFDIDEEEK--EDALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMM 589

Query: 522 -SIAYSRDLIVRDRVRYHHFRDG 543
            S  ++R++IVRDR R+HHF+DG
Sbjct: 590 ISKIFNREIIVRDRNRFHHFKDG 612



 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 172/483 (35%), Positives = 264/483 (54%), Gaps = 22/483 (4%)

Query: 86   RPDTFTFTFTLKACERVKALNKCQE--LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
            RP+  TF   + AC  V   NK +   +HG V++SG    V V   LM  Y   G + ++
Sbjct: 634  RPNEVTFLSMISAC--VHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISS 691

Query: 144  RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
              +F+++  ++LVSWN++I  + Q     E L  +   R+  +  D  T + +L  C  +
Sbjct: 692  CKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDI 751

Query: 204  GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
            G + +   +H +    GF  +  +  AL+D+YAK G L+ +  VF  +   D ++W +M+
Sbjct: 752  GVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAML 811

Query: 264  VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
              Y  HG G +AI  F+ M+  G  PD +TF  LL  CSH GLVEEG  YF  M  RY +
Sbjct: 812  AAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRI 871

Query: 324  KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAM 381
            +P + HY C+VDL GR+G L+ A  +I    P +P   +W  LLG+C+++++ ++G  A 
Sbjct: 872  EPRLDHYSCMVDLMGRSGLLQDAYGLIK-EMPMEPSSGVWGALLGACRVYKDTQLGTKAA 930

Query: 382  KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
            K L +LE     +Y++L+ IY+ +   +  +R R L+K  G+    G+S+IE GN++HKF
Sbjct: 931  KRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKF 990

Query: 442  VVDDKSHPDADMIYRKLEEIMHRAKF-IGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
            VV D SHP+++ I +KL+EI  + K  +G+      V       ED  E+    HSEK+A
Sbjct: 991  VVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVL--HDVDEDVKEEMINQHSEKIA 1048

Query: 501  IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
            +AFGL        + I KNLR            S+   R +I+RD  R+HHF +G CSC 
Sbjct: 1049 MAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCR 1108

Query: 549  DYW 551
            DYW
Sbjct: 1109 DYW 1111



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 12/182 (6%)

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG--DEAISFFKQMLMA--GFHPDSIT 293
           CG+      + S++  R+++  +     +   GRG   +      +M+ +  GF P+ +T
Sbjct: 580 CGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGRGYLGKCFEVLSRMMRSEVGFRPNEVT 639

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           FL ++  C H G  EEGV   H +V +  +   +K    L++LYG+ G L  + ++    
Sbjct: 640 FLSMISACVHGGNKEEGV-CIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDL 698

Query: 354 SPSDPVLWRTLLGSCKIHRNVEIGE--IAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
           S  + V W T++    IH    + E  +A  N+ +           LA +  C  ++ GV
Sbjct: 699 SVKNLVSWNTMI---VIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVC--EDIGV 753

Query: 412 AR 413
            R
Sbjct: 754 VR 755


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/524 (35%), Positives = 296/524 (56%), Gaps = 16/524 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF  + +  +  W +++  F Q+    +A+  +  M    ++  D +TF   L AC 
Sbjct: 225 ARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIA-IDQYTFGSILTACG 283

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + AL + +++H ++IR+ Y+  V V + L+  Y+    I+ A +VF  M  ++++SW +
Sbjct: 284 ALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTA 343

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I  Y Q     EA++++  M+ + +  D +TL  ++SSCA++ +L  G   H +A   G
Sbjct: 344 LIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSG 403

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            +  + V NALV +Y KCG+++ A  +F  M   D +SW +++ GY   GR  E I  F+
Sbjct: 404 LMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFE 463

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML  G  PD +TF+G+L  CS  G VE+G  YFH M   + + P   HY C++DLY R+
Sbjct: 464 KMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRS 523

Query: 341 GKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           GKL++A E I       D + W TLL +C++  ++EIG+ A +NL++++  +   YVLL 
Sbjct: 524 GKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLC 583

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
           +++A       VA+ R+ ++   +K  PG SWI+  N+VH F  DD+SHP +  IY KLE
Sbjct: 584 SMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLE 643

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
            +  +    GY  D S V    + ++     S  +HSEKLAIAFGL   P    +RIVKN
Sbjct: 644 WLNSKMLEEGYKPDVSSVLHDVADTDKVHMVS--HHSEKLAIAFGLIFVPQEMPIRIVKN 701

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    RD++VRD VR+H F DG+CSCGD+W
Sbjct: 702 LRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 204/426 (47%), Gaps = 47/426 (11%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTL 96
           LS  + LF  +      ++N++I  F+   S  QA+  Y  +L A  S RP   T +  +
Sbjct: 88  LSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMV 147

Query: 97  KACERVKALNKCQELHGFVIRSGY-------------------------------ERCVV 125
            A   +      ++ H  ++R G+                                + VV
Sbjct: 148 MAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVV 207

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           +   ++ G     ++E AR +F+ M +RD ++W ++++ +TQ     EAL+++ RMRF+ 
Sbjct: 208 MYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQG 267

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           + +D +T   +L++C  + AL  G  +H       + ++V+VG+ALVDMY+KC ++  A 
Sbjct: 268 IAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAE 327

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF RM  ++++SW ++IVGYG +G  +EA+  F +M   G  PD  T   ++  C++  
Sbjct: 328 TVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLA 387

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHY----GCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
            +EEG + FH +     L  G+ HY      LV LYG+ G +E A  + +  S  D V W
Sbjct: 388 SLEEGAQ-FHCLA----LVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSW 442

Query: 362 RTLL-GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKL 417
             L+ G  +  R  E  ++  K L +           +  + AC++    E+G +    +
Sbjct: 443 TALVSGYAQFGRAKETIDLFEKMLAK--GVKPDGVTFIGVLSACSRAGFVEKGRSYFHSM 500

Query: 418 IKSNGI 423
            K +GI
Sbjct: 501 QKDHGI 506



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 139/347 (40%), Gaps = 67/347 (19%)

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS-GYERCVVVSTNLMRGYAANGVIEA 142
           +SRP +  +   L A  R +  +    LH  ++R+  +     +  +L+  Y   G    
Sbjct: 1   MSRPLSSQYAALLSAAARTEP-HVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHAR 59

Query: 143 ARSVFDNMP-------------------------------ERDLVSWNSIISCYTQASFH 171
           AR VFD MP                               +RD+VS+N++I+ ++    H
Sbjct: 60  ARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSH 119

Query: 172 LEALKLYERMRFED--VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
            +A+++Y  +   D  V     T+  ++ + + +G   +G   H     +GF  + +VG+
Sbjct: 120 AQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGS 179

Query: 230 ALVDMYAK-------------------------------CGNLDSAFCVFSRMRKRDVLS 258
            LVDMYAK                               C  ++ A  +F  M  RD ++
Sbjct: 180 PLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSIT 239

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           W +M+ G+  +G   EA+  F++M   G   D  TF  +L  C     +E+G +  H  +
Sbjct: 240 WTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQ-IHAYI 298

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            R      +     LVD+Y +   ++ A  V    +  + + W  L+
Sbjct: 299 IRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALI 345



 Score = 45.1 bits (105), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A  LF+++      +W +L+  +AQ     + I  +  ML   + +PD  TF   L
Sbjct: 423 SIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGV-KPDGVTFIGVL 481

Query: 97  KACERVKALNK-------CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
            AC R   + K        Q+ HG V    +  C++   +L   Y+ +G ++ A      
Sbjct: 482 SACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMI---DL---YSRSGKLKEAEEFIKQ 535

Query: 150 MP-ERDLVSWNSIIS 163
           MP   D + W +++S
Sbjct: 536 MPMHPDAIGWGTLLS 550


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 199/529 (37%), Positives = 294/529 (55%), Gaps = 25/529 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  +F+++       W ++I  + Q+  PL+A+  +  M        D  T      A  
Sbjct: 186 AHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGF-LGDEITAISVASAVG 244

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++        +HG+ + +G+   V V  +++  YA  G +E AR VFD M ER+ +SWNS
Sbjct: 245 QLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNS 304

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++S YTQ     +AL L+ +M+  +   +  T + ++S+C+++G+ ++G  LH       
Sbjct: 305 MLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSK 364

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
                 + NA++DMY KCG+LD+A  +F+   + +RDV SWN +I GYGVHG G EA+  
Sbjct: 365 MDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALEL 424

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M + G  P+ ITF  +L  CSH GL++EG + F  M ++ +++P +KHY C+VD+ G
Sbjct: 425 FSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADM-TKLSVRPEMKHYACMVDMLG 483

Query: 339 RAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           RAG L +A  +I    S PSD V W  LL +C+IH N E+GEIA  NL QLE    G YV
Sbjct: 484 RAGFLNEAFRLIKKIPSRPSDEV-WGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYV 542

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           L++ IYA +   + V   R+ +KS G+K    +S IE G +VH F   D+S P    +YR
Sbjct: 543 LMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYR 602

Query: 457 KLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           K+E +    K +GY  D S V   V     E  L     YHSEKLA+AFG+     G  +
Sbjct: 603 KVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLN----YHSEKLAVAFGIMKMDQGMPI 658

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++ KNLR            S  Y R +IVRD  R+HHF+ G CSCGDYW
Sbjct: 659 QVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 192/362 (53%), Gaps = 11/362 (3%)

Query: 49  QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKC 108
           Q P +   N+++RA+A +    +AI  Y +M    +   + FT+ F LK C         
Sbjct: 93  QAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVG-VNNFTYPFVLKVCASELGAVFG 151

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           + +HG V+R+G+   + V   L+  YA  G I  A  VFD M  RD+V W ++I+ Y QA
Sbjct: 152 EVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQA 211

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
              L+AL L+ +M+ E    D  T + + S+   +G   M I +H  A   GF+  V VG
Sbjct: 212 ERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVG 271

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N++V MYAKCGN++ A  VF RM +R+ +SWNSM+ GY  +GR  +A+S F QM  +   
Sbjct: 272 NSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECD 331

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMV-SRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
           P+ +T L ++  CS+ G    G +  + ++ S+ ++   +++   ++D+Y + G L+ A+
Sbjct: 332 PNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN--AIMDMYMKCGDLDTAV 389

Query: 348 EVINTSS--PSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIYA 403
           E+ N       D   W  L+    +H +   G+ A++  + +Q+E     D    + + A
Sbjct: 390 EMFNNCELGERDVSSWNVLISGYGVHGH---GKEALELFSRMQVEGVEPNDITFTSILSA 446

Query: 404 CT 405
           C+
Sbjct: 447 CS 448


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 210/572 (36%), Positives = 312/572 (54%), Gaps = 33/572 (5%)

Query: 9   YVGLNKARQAHEIHGEWLLNSYAISVSSSLSY---------AQLLFNQIQNP--QTQAWN 57
           +VGL   RQ H +      +SY    +S L+Y         A+++FN +        +WN
Sbjct: 153 HVGL--IRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWN 210

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
           S+I A+ Q    L+A+  Y  M+       D FT    L     V+ L+   + H   I+
Sbjct: 211 SMIVAYGQHKRGLKALALYRDMVHRGF-EIDMFTLASVLTTFSCVEDLSGGLQFHAKAIK 269

Query: 118 SGYERCVVVSTNLMRGYAANGV-IEAARSVFDNMPERDLVSWNSIISCYTQ-ASFHLEAL 175
           +G+ +   V + L+  YA  G  +  +R VF+ +   DLV WN++IS Y+Q     +EAL
Sbjct: 270 TGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEAL 329

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGNALVDM 234
           + + +M+      D  + VC +S+C+++ + + G   H +A +     + + V NALV M
Sbjct: 330 ECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTM 389

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y+KCGNL  A  +F RM + + ++ NS+I GY  HG G E+++ F+QML A   P SIT 
Sbjct: 390 YSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITL 449

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           + +L  C+H G VEEG +YF+MM   + ++P  +HY C++DL GRAGKL +A  +I+T  
Sbjct: 450 VSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDT-M 508

Query: 355 PSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           P  P    W  LLG+C+ + N+E+ E A    +QLE  +A  Y++LA++Y+  +  E  A
Sbjct: 509 PFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAA 568

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           R RKL++  GI+  PG SWIE+  +VH FV +D SHP    I+  L+E+  + K  GY  
Sbjct: 569 RIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVP 628

Query: 473 DESLVAVSGSSS-EDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
           D     V    + E   E   A+HSEKLA+AFGL  T  G  L +VKNLR          
Sbjct: 629 DVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIK 688

Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             S    R + VRD  R+H F DG CSCGDYW
Sbjct: 689 FMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 122/390 (31%), Positives = 194/390 (49%), Gaps = 17/390 (4%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A +  S +  A  LF+QI  P   ++N+LI A+A     L A+  +  M    L   D F
Sbjct: 83  AYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVM-DGF 141

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           TF+  + AC     +   ++LH     SG++  V V  +L+  Y+ NG++E A  VF+ M
Sbjct: 142 TFSGVITAC--CNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGM 199

Query: 151 PE--RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            E  RD VSWNS+I  Y Q    L+AL LY  M      +D FTL  +L++ + V  L+ 
Sbjct: 200 GEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSG 259

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCG-NLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           G+  H  A + GF ++ +VG+ L+DMYAKCG  +  +  VF  +   D++ WN+MI GY 
Sbjct: 260 GLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYS 319

Query: 268 VHGR-GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
            +     EA+  F+QM  AG+ PD  +F+  +  CS+     +G + FH +  +  +   
Sbjct: 320 QNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQ-FHALAMKSEIPSN 378

Query: 327 -IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
            I     LV +Y + G L+ A ++       + V   +++     H    IG  ++    
Sbjct: 379 QISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQH---GIGTESLNLFE 435

Query: 386 QLEAASAG--DYVLLATIYACT---KDEEG 410
           Q+ AAS       L++ + AC    + EEG
Sbjct: 436 QMLAASIAPTSITLVSILSACAHTGRVEEG 465



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 179/374 (47%), Gaps = 35/374 (9%)

Query: 39  SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           S+ Q+L + I N       SL   + +SL P  + +  NH ++   S+ +  T       
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIP-SSTYLSNHFILL-YSKCNLLTTAH---- 63

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
                A N+  E + F   +           L+  YA   +I  A  +FD +P+ DLVS+
Sbjct: 64  ----HAFNQTHEPNVFSFNA-----------LIAAYAKESLIHVAHHLFDQIPQPDLVSF 108

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA-HVGALNMGIFLHRIAC 217
           N++I+ Y      L AL L+  MR   + +DGFT   ++++C  HVG +     LH +A 
Sbjct: 109 NTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQ---LHSLAF 165

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEA 275
             GF   V V N+L+  Y+K G L+ A  VF+ M +  RD +SWNSMIV YG H RG +A
Sbjct: 166 SSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKA 225

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-LV 334
           ++ ++ M+  GF  D  T   +L   S    +  G++ FH    +       +H G  L+
Sbjct: 226 LALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQ-FHAKAIKTGFNKN-RHVGSGLI 283

Query: 335 DLYGRAGK-LEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS-- 391
           D+Y + G  + ++ +V      SD V+W T++      +N E+   A++   Q++ A   
Sbjct: 284 DMYAKCGAGMSESRKVFEEICGSDLVVWNTMISG--YSQNKELSVEALECFRQMQRAGYW 341

Query: 392 AGDYVLLATIYACT 405
             D   +  I AC+
Sbjct: 342 PDDCSFVCAISACS 355


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/513 (37%), Positives = 301/513 (58%), Gaps = 23/513 (4%)

Query: 57  NSLIRAFAQSLSP---LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
           N+LIRA A S  P   L+A  ++  ML  S + P+ FTF F LKAC     +    + H 
Sbjct: 112 NTLIRAHAASPLPSARLRAASFFPLMLR-SATLPNKFTFPFLLKACAAFPGVG--VQAHA 168

Query: 114 FVIRSGYERCVVVSTNLMRGYAANG--VIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
             ++ G+     VS  L+  Y+  G   +  AR+VFD M +   V+W+++I  Y ++   
Sbjct: 169 AALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSGLS 228

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
            +A+ L+  M+   V  D  T++ +L++ A +GAL +  ++ R   + G  +SV + NAL
Sbjct: 229 SDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTLCNAL 288

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           +D  AKCG+LD A  VF  M++R ++SW S+I    + GRG EA++ F++M  AG  PD 
Sbjct: 289 IDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDD 348

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
           + F+G+L  CSH G+V+EG  YF  M   Y + P I+HYGC+VD++GRAG +E+A+E ++
Sbjct: 349 VAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVH 408

Query: 352 T-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410
                 +P++WRTL+ +C+ H  +E+GE   +NL+    A   +YV+L+ +YA T+  + 
Sbjct: 409 KMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANYVMLSNVYALTRRWKE 468

Query: 411 VARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY 470
            +  R+ +   GIK  PG S +E+  +VH+F+  D+SHP    IY  +EE+    +  G+
Sbjct: 469 KSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELRRAGH 528

Query: 471 TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
               S V +     E+  E +  +HSEKLAIAF L  TP GT +R+VKNLR         
Sbjct: 529 ISATSEVLL--DLDEEDKEVALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAI 586

Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              S+ Y+R++IVRDR R+H F++G CSC D+W
Sbjct: 587 KCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 619


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/565 (32%), Positives = 306/565 (54%), Gaps = 57/565 (10%)

Query: 38   LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
            L+YA+ +FN++      +WNS+I  + Q+    +A+  +  M +  + +PD F+ +  L 
Sbjct: 530  LNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGI-KPDCFSLSSMLS 588

Query: 98   ACERVKALNKCQELHGFVIRSG--------------YERC-----------------VVV 126
            +C  +    K +ELH F++R+               Y +C                 V++
Sbjct: 589  SCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVIL 648

Query: 127  STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            +  ++  +  +G    A+++FD M +R+   WNSI++ Y       E+   +  M   D+
Sbjct: 649  NNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDI 708

Query: 187  GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAF 245
              D  T+V +++ C+ + AL  G  LH +  + GFV  SV +  ALVDMY+KCG +  A 
Sbjct: 709  EYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKAR 768

Query: 246  CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
             VF  M  ++++SWN+MI GY  HG   EA+  +++M   G +P+ +TFL +L  CSH G
Sbjct: 769  TVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTG 828

Query: 306  LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL--WRT 363
            LVEEG+  F  M   YN++   +HY C+VDL GRAG+LE A E +    P +P +  W  
Sbjct: 829  LVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVE-KMPIEPEVSTWGA 887

Query: 364  LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
            LLG+C++H+++++G +A + L +L+  + G YV+++ IYA     + V   R+++K  G+
Sbjct: 888  LLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGV 947

Query: 424  KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV-----A 478
            K  PG SWIEI +++  F    K+HP  + IY  L  +  ++K +GY  D S +      
Sbjct: 948  KKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKD 1007

Query: 479  VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
            +     E++L +    HSE+LA++ GL + P  +++R+ KNLR            S    
Sbjct: 1008 IKEEEEEEYLLQ----HSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITG 1063

Query: 527  RDLIVRDRVRYHHFRDGLCSCGDYW 551
            R +I RD  R+HHF +G CSCGDYW
Sbjct: 1064 RRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 164/318 (51%), Gaps = 3/318 (0%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+++       WNS+I A AQ      A+  +  M   S  + + F     L A   + 
Sbjct: 333 VFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRM-QESGYKSNRFNLGSILMASAGLA 391

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            + K +ELHG ++R+     +++ + L+  Y+  G++E A  VF ++ ER+ VS+N++++
Sbjct: 392 DIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLA 451

Query: 164 CYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
            Y Q     EAL+LY  M+ ED +  D FT   LL+ CA+    N G  +H         
Sbjct: 452 GYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANIT 511

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
           +++ V   LV MY++CG L+ A  +F+RM +R+  SWNSMI GY  +G   EA+  FKQM
Sbjct: 512 KNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQM 571

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
            + G  PD  +   +L  C      ++G E  + +V     + GI     LVD+Y + G 
Sbjct: 572 QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV-VLVDMYAKCGS 630

Query: 343 LEKALEVINTSSPSDPVL 360
           ++ A +V + +   D +L
Sbjct: 631 MDYAWKVYDQTIKKDVIL 648



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/447 (25%), Positives = 197/447 (44%), Gaps = 47/447 (10%)

Query: 11  GLNKARQAHEIHGEW---LLNSYAI---------SVSSSLSYAQLLFNQIQNPQTQAWNS 58
           GL    +  E+HG     LLNS  I         S    +  A  +F  +      ++N+
Sbjct: 389 GLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNA 448

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           L+  + Q     +A+  Y+ M      +PD FTFT  L  C   +  N+ +++H  +IR+
Sbjct: 449 LLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA 508

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
              + ++V T L+  Y+  G +  A+ +F+ M ER+  SWNS+I  Y Q     EAL+L+
Sbjct: 509 NITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLF 568

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
           ++M+   +  D F+L  +LSSC  +     G  LH         E   +   LVDMYAKC
Sbjct: 569 KQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKC 628

Query: 239 GNLDSAFCV-------------------------------FSRMRKRDVLSWNSMIVGYG 267
           G++D A+ V                               F +M +R+   WNS++ GY 
Sbjct: 629 GSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYA 688

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
             G   E+ + F +ML +    D +T + ++  CS    +E G +   +++ +  +   +
Sbjct: 689 NKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSV 748

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
                LVD+Y + G + KA  V +  +  + V W  ++     H   +   I  + + + 
Sbjct: 749 VLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPK- 807

Query: 388 EAASAGDYVLLATIYACTKD---EEGV 411
           +     +   LA + AC+     EEG+
Sbjct: 808 KGMYPNEVTFLAILSACSHTGLVEEGL 834



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 161/322 (50%), Gaps = 3/322 (0%)

Query: 45  FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
            ++I+      WN++I  + + LS  +A   ++ ML   +  PD FTF   L+ C  +++
Sbjct: 233 LDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVC-PDNFTFASALRVCGALRS 291

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
            +  +++H  +I  G++    V   L+  YA     E+   VFD M ER+ V+WNSIIS 
Sbjct: 292 RDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISA 351

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
             Q     +AL L+ RM+      + F L  +L + A +  +  G  LH           
Sbjct: 352 EAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSD 411

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           + +G+ALVDMY+KCG ++ A  VF  + +R+ +S+N+++ GY   G+ +EA+  +  M  
Sbjct: 412 IILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQS 471

Query: 285 A-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  PD  TF  LL  C++Q    +G +  H  + R N+   I     LV +Y   G+L
Sbjct: 472 EDGIQPDQFTFTTLLTLCANQRNDNQGRQ-IHAHLIRANITKNIIVETELVHMYSECGRL 530

Query: 344 EKALEVINTSSPSDPVLWRTLL 365
             A E+ N  +  +   W +++
Sbjct: 531 NYAKEIFNRMAERNAYSWNSMI 552



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 162/329 (49%), Gaps = 2/329 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA+ LF ++      AWN++I A+A+    ++ +  Y  M   S +  D FTF   +K
Sbjct: 125 LCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRM-RGSGNFSDKFTFPSVIK 183

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  ++ +   ++L   V+++G    + V   L+ GYA  G ++ A +  D +    +V+
Sbjct: 184 ACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVT 243

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++I+ Y +     EA  +++RM    V  D FT    L  C  + + + G  +H    
Sbjct: 244 WNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLI 303

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             GF    +VGNAL+DMYAKC + +S   VF  M +R+ ++WNS+I      G  ++A+ 
Sbjct: 304 ACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALV 363

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M  +G+  +      +L   +    + +G E  H  + R  L   I     LVD+Y
Sbjct: 364 LFLRMQESGYKSNRFNLGSILMASAGLADIGKGRE-LHGHLVRNLLNSDIILGSALVDMY 422

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            + G +E+A +V  +    + V +  LL 
Sbjct: 423 SKCGMVEEAHQVFRSLLERNEVSYNALLA 451



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 135/288 (46%), Gaps = 8/288 (2%)

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA-- 142
           S  +   ++  ++ C    +  + + +H  +I +GY     + T ++  YA +G ++   
Sbjct: 67  SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLC 126

Query: 143 -ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            AR +F+ MPER+L +WN++I  Y +   ++E L+LY RMR      D FT   ++ +C 
Sbjct: 127 YARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACI 186

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
            +  +     L     + G   +++VG ALVD YA+ G +D A      +    V++WN+
Sbjct: 187 AMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNA 246

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL--CGCSHQGLVEEGVEYFHMMVS 319
           +I GY      +EA   F +ML  G  PD+ TF   L  CG        +G +  H  + 
Sbjct: 247 VIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRS---RDGGKQVHSKLI 303

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
               K        L+D+Y +    E  L+V +     + V W +++ +
Sbjct: 304 ACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISA 351


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/534 (35%), Positives = 297/534 (55%), Gaps = 29/534 (5%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPL------QAIFYYNHMLMASLSRPDTF 90
           +L  A  LF  +Q P    +N++I  F ++ + +      +A+  Y+ +    + +P  F
Sbjct: 262 ALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGM-QPTEF 320

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           TF+  L+AC     L   +++HG VI+  ++    + + L+  Y  +G +E     F + 
Sbjct: 321 TFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSS 380

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           P+ D+V+W +++S   Q   H +AL L+       +  D FT+  ++++CA +     G 
Sbjct: 381 PKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGE 440

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +   A + GF     +GN+ V MYA+ G++D+A   F  M   DV+SW+++I  +  HG
Sbjct: 441 QIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHG 500

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
              +A+ FF +M+ A   P+ ITFLG+L  CSH GLV+EG+ Y+  M   Y L P IKH 
Sbjct: 501 CARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHC 560

Query: 331 GCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
            C+VDL GRAG+L  A   I N    +DPV+WR+LL SC+IHR++E G++    +++LE 
Sbjct: 561 TCVVDLLGRAGRLADAEAFISNGIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEP 620

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
            S+  YV+L  +Y    +    ++TR L+K  G+K  PG SWIE+   VH FV  DKSHP
Sbjct: 621 TSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHP 680

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
           ++  IY KLEE++ R + +  T  E       S  E  L      HSEKLA+A G+   P
Sbjct: 681 ESSAIYTKLEEMLSRIEKLATTDTEI------SKREQNLMNC---HSEKLAVALGMIHLP 731

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               +R++KNLR            S + +R++I+RD +R+HHFRDG CSC DYW
Sbjct: 732 QSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHFRDGSCSCADYW 785



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 166/344 (48%), Gaps = 26/344 (7%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFA-QSLSPLQAIFYYNHMLMASLSRP-------DTFTF 92
           A+ L +++      ++N LI A++ + L+PL          + +L+R        D F++
Sbjct: 62  ARRLLDEMPRRNAVSFNLLIDAYSREGLAPLS---------LETLARARRAGVDVDRFSY 112

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              L AC R   L   + +H   I  G    V VS +L+  Y+  G +  AR VFD   E
Sbjct: 113 AAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEE 172

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-- 210
           RD VSWNS++S Y +A    E ++++  MR   +GL+ F L  ++  C+  G   M I  
Sbjct: 173 RDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAE 232

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY---- 266
            +H    + G    V++ +A++DMYAK G L  A  +F  +++ +V+ +N+MI G+    
Sbjct: 233 AVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTE 292

Query: 267 GVHGR--GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
            V G+    EA++ + ++   G  P   TF  +L  C+  G +E G +  H  V +Y  +
Sbjct: 293 TVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFG-KQIHGQVIKYTFQ 351

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
                   L+DLY  +G +E       +S   D V W  ++  C
Sbjct: 352 EDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGC 395



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 131/284 (46%), Gaps = 6/284 (2%)

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
             L+  Y   G    AR + D MP R+ VS+N +I  Y++      +L+   R R   V 
Sbjct: 47  NTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVD 106

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
           +D F+    L++C+  G L  G  +H +A   G    V+V N+LV MY+KCG +  A  V
Sbjct: 107 VDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRV 166

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL- 306
           F    +RD +SWNS++ GY   G  +E +  F  M   G   +S     ++  CS +G  
Sbjct: 167 FDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDG 226

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL- 365
             +  E  H  V +  L   +     ++D+Y + G L +A  +  +    + V++ T++ 
Sbjct: 227 TMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIA 286

Query: 366 GSCK----IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           G C+    I + V    + + + VQ       ++   + + AC 
Sbjct: 287 GFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACN 330


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 194/545 (35%), Positives = 305/545 (55%), Gaps = 29/545 (5%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LLN YA      L  A+ LF ++ +     W S+I  + ++  P +A+  Y  M     S
Sbjct: 120 LLNMYA--ACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFS 177

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD  T    + AC  +K L    +LH  +     + C V+ + L+  YA  G ++ AR 
Sbjct: 178 -PDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQ 236

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYER------MRFEDVGLDGFTLVCLLSS 199
           VFD + ++D+ +W+++I  Y + +   EAL+L+        MR  +V     T++ ++S+
Sbjct: 237 VFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEV-----TILAVISA 291

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           CA +G L  G ++H          SV + N+L+DM++KCG++D+A  +F  M  +D++SW
Sbjct: 292 CAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISW 351

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           NSM+ G+ +HG G EA++ F+ M      PD ITF+G+L  CSH GLV+EG + F+ + +
Sbjct: 352 NSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEA 411

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGE 378
            Y ++   +HYGC+VDL  RAG L +A E I       D  +W ++LG+C+++ N+E+GE
Sbjct: 412 LYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGE 471

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
            A + L++LE  + G Y+LL+ IYA  K    V + R+L+   GI+ TPG S + I N  
Sbjct: 472 EAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIA 531

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           H F+  D SHP+   I   L ++  + K  GY  D S V ++   ++   E+S + HSEK
Sbjct: 532 HSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKK--EESVSQHSEK 589

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LA+ +GL  +  G  + I+KNLR            S  Y R + +RDR R+HHF+DG CS
Sbjct: 590 LALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCS 649

Query: 547 CGDYW 551
           C DYW
Sbjct: 650 CRDYW 654



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 191/372 (51%), Gaps = 3/372 (0%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  + YA  +F   +      WNS++RAF  S  P +A+  Y  ML  S + PD FTF  
Sbjct: 25  SLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPS 84

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            LK C  +      + LHG V++      + + T L+  YAA G +++AR +F+ M  R+
Sbjct: 85  LLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRN 144

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            V W S+IS Y +     EAL LY++M  +    D  T+  L+S+CA +  L +G+ LH 
Sbjct: 145 KVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHS 204

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              EM       +G+ALV+MYAKCG+L +A  VF ++  +DV +W+++I GY  + R  E
Sbjct: 205 HIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTE 264

Query: 275 AISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           A+  F+++   +   P+ +T L ++  C+  G +E G  + H  ++R      +     L
Sbjct: 265 ALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-RWVHDYITRTQKGHSVSLNNSL 323

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           +D++ + G ++ A  + ++ S  D + W +++    +H  +    +A   L+Q       
Sbjct: 324 IDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALH-GLGREALAQFRLMQTTDLQPD 382

Query: 394 DYVLLATIYACT 405
           +   +  + AC+
Sbjct: 383 EITFIGVLTACS 394


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 204/545 (37%), Positives = 308/545 (56%), Gaps = 28/545 (5%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N+YA    S   +A+ +F+++ NP T  +N++I  ++ +  PL A+  +  M      
Sbjct: 95  LINTYA--KCSLHHHARKVFDEMPNP-TICYNAMISGYSFNSKPLHAVCLFRKMRREEED 151

Query: 86  RPDT------FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
             D        T    +  C     L     LHG  +R G+   + V+ +L+  Y   G 
Sbjct: 152 GLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGE 211

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           +E AR VFD M  RDL++WN++IS Y Q       L++Y  M+   V  D  TL+ ++S+
Sbjct: 212 VELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSA 271

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           CA++GA  +G  + R     GF  + ++ NALV+MYA+CGNL  A  VF R  ++ V+SW
Sbjct: 272 CANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTRAREVFDRSGEKSVVSW 331

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
            ++I GYG+HG G+ A+  F +M+ +   PD   F+ +L  CSH GL + G+EYF  M  
Sbjct: 332 TAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLTDRGLEYFKEMER 391

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGE 378
           +Y L+PG +HY C+VDL GRAG+LE+A+ +I +     D  +W  LLG+CKIH+N EI E
Sbjct: 392 KYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGALLGACKIHKNAEIAE 451

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
           +A +++V+LE  + G YVLL+ IY    + EGV+R R +++   ++  PG+S++E   ++
Sbjct: 452 LAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKLRKDPGYSYVEYKGKM 511

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           + F   D SHP    IYR L+E+    K +    ++      G S E  +   +  HSEK
Sbjct: 512 NLFYSGDLSHPQTKQIYRMLDELESLVKEVHPPNEK----CQGRSEELLI--GTGVHSEK 565

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LAIAF L  T  GT + ++KNLR            S   +R  IVRD  R+HHFRDG+CS
Sbjct: 566 LAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNRQFIVRDATRFHHFRDGICS 625

Query: 547 CGDYW 551
           C DYW
Sbjct: 626 CKDYW 630



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 199/389 (51%), Gaps = 17/389 (4%)

Query: 50  NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ 109
           NP T AWN+ +R  ++     +A+  Y HML +S    +TFTF F LK+C  +       
Sbjct: 17  NPTT-AWNNQLRQLSKQRQYREALTLYRHMLRSSFFP-NTFTFPFLLKSCAFLSLPLAAS 74

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           +LH  VIR+G +      ++L+  YA   +   AR VFD MP    + +N++IS Y+  S
Sbjct: 75  QLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPN-PTICYNAMISGYSFNS 133

Query: 170 FHLEALKLYERMRFE-------DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
             L A+ L+ +MR E       DV ++  TL+ L+S C+    L +G+ LH      GFV
Sbjct: 134 KPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFV 193

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
             + V N+LV MY KCG ++ A  VF  M  RD+++WN+MI GY  +G     +  + +M
Sbjct: 194 TDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEM 253

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR-YNLKPGIKHYGCLVDLYGRAG 341
            ++G   D++T LG++  C++ G    G E    +  R +   P +++   LV++Y R G
Sbjct: 254 KLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRN--ALVNMYARCG 311

Query: 342 KLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
            L +A EV + S     V W  ++G   IH + E+       +V+  A      V ++ +
Sbjct: 312 NLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVE-SAVRPDKTVFVSVL 370

Query: 402 YACTK---DEEGVARTRKLIKSNGIKTTP 427
            AC+     + G+   +++ +  G++  P
Sbjct: 371 SACSHAGLTDRGLEYFKEMERKYGLQPGP 399


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 188/539 (34%), Positives = 314/539 (58%), Gaps = 19/539 (3%)

Query: 21   IHGEWLLNSYAISVSS--SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNH 78
            ++ E + N++  S +   SLSYAQ +F+ I++    +WN+LI   AQS  P  ++  +  
Sbjct: 782  VYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQ 841

Query: 79   MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
            M ++ L  PD+FT    L AC ++K+L   +E+HGF+IR+  ER + V  +++  Y   G
Sbjct: 842  MKISGL-LPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 900

Query: 139  VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
             +   +++FD M ++ LVSWN++I+ Y Q  F   AL ++ +M    + L G +++ +  
Sbjct: 901  ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 960

Query: 199  SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
            +C+ + +L +G   H  A +    +  ++  +L+DMYAK G++  +  VF+ ++++   S
Sbjct: 961  ACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS 1020

Query: 259  WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
            WN+MI+GYG+HG   EAI  F++M   G +PD +TFLG+L  C+H GL+ EG+ Y   M 
Sbjct: 1021 WNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMK 1080

Query: 319  SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI--NTSSPSDPVLWRTLLGSCKIHRNVEI 376
            S + LKP +KHY C++D+ GRAG+L+KAL V+    S  +D  +W++LL SC+IH+N+E+
Sbjct: 1081 SSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEM 1140

Query: 377  GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
            GE     L +LE     +YVLL+ +YA     E V + R+ +    ++   G SWIE+  
Sbjct: 1141 GEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNR 1200

Query: 437  QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHS 496
            +V  FVV ++     + I      +  +   +GY  D ++      S E+ +E+    HS
Sbjct: 1201 KVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPD-TMSVQHDLSEEEKIEQLRG-HS 1258

Query: 497  EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDG 543
            EKLA+ +GL  T +GT++R+ KNLR            S    R+++VRD  R+HHF++G
Sbjct: 1259 EKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNG 1317



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 192/419 (45%), Gaps = 25/419 (5%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           MG K H    G  + R   ++    ++  YA+  S   S  + +F+ +++     WN++I
Sbjct: 457 MGRKIHQLVSGSTRLRN-DDVLCTRIITMYAMCGSPDDS--RFVFDALRSKNLFQWNAVI 513

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
            +++++    + +  +  M+  +   PD FT+   +KAC  +  +     +HG V+++G 
Sbjct: 514 SSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGL 573

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
              V V   L+  Y  +G +  A  +FD MPER+LVSWNS+I  ++   F  E+  L   
Sbjct: 574 VEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGE 633

Query: 181 MRFEDVGLDGF-----TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           M  E+ G   F     TLV +L  CA    + +G  +H  A ++   + + + NAL+DMY
Sbjct: 634 M-MEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMY 692

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG--FHPDSIT 293
           +KCG + +A  +F     ++V+SWN+M+ G+   G         +QML  G     D +T
Sbjct: 693 SKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVT 752

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH----YGCLVDLYGRAGKLEKALEV 349
            L  +  C H+  +   ++  H     Y+LK    +        V  Y + G L  A  V
Sbjct: 753 ILNAVPVCFHESFL-PSLKELHC----YSLKQEFVYNELVANAFVASYAKCGSLSYAQRV 807

Query: 350 INTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACTK 406
            +         W  L+G    H       +++   +Q++ +      + + + + AC+K
Sbjct: 808 FHGIRSKTVNSWNALIGG---HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSK 863



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 187/433 (43%), Gaps = 23/433 (5%)

Query: 8    RYVGLNKARQAHEIHG---------EWLLNSYAISVSSS---LSYAQLLFNQIQNPQTQA 55
            R +GL K      +HG         E +LN+  + + S    ++ AQ++F    N    +
Sbjct: 661  REIGLGKG-----VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVS 715

Query: 56   WNSLIRAFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKACERVKALNKCQELHGF 114
            WN+++  F+              ML      + D  T    +  C     L   +ELH +
Sbjct: 716  WNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCY 775

Query: 115  VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
             ++  +    +V+   +  YA  G +  A+ VF  +  + + SWN++I  + Q++    +
Sbjct: 776  SLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLS 835

Query: 175  LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
            L  + +M+   +  D FT+  LLS+C+ + +L +G  +H           ++V  +++ +
Sbjct: 836  LDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSL 895

Query: 235  YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
            Y  CG L +   +F  M  + ++SWN++I GY  +G  D A+  F+QM++ G     I+ 
Sbjct: 896  YIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISM 955

Query: 295  LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
            + +   CS    +  G E  H    ++ L+        L+D+Y + G + ++ +V N   
Sbjct: 956  MPVFGACSLLPSLRLGREA-HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK 1014

Query: 355  PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGV 411
                  W  ++    IH  +    I +   +Q    +  D   L  + AC       EG+
Sbjct: 1015 EKSTASWNAMIMGYGIH-GLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGL 1073

Query: 412  ARTRKLIKSNGIK 424
                ++  S G+K
Sbjct: 1074 RYLDQMKSSFGLK 1086


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/522 (35%), Positives = 291/522 (55%), Gaps = 18/522 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F  +      ++N++I  +AQS     A+     M    L +PD+FT +  L       
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDL-KPDSFTLSSVLPIFSEYV 256

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            + K +E+HG+VIR G +  V + ++L+  YA +  IE +  VF  +  RD +SWNS+++
Sbjct: 257 DVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVA 316

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y Q   + EAL+L+ +M    V         ++ +CAH+  L++G  LH      GF  
Sbjct: 317 GYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGS 376

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           ++++ +ALVDMY+KCGN+ +A  +F RM   D +SW ++I+G+ +HG G EA+S F++M 
Sbjct: 377 NIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMK 436

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  P+ + F+ +L  CSH GLV+E   YF+ M   Y L   ++HY  + DL GRAGKL
Sbjct: 437 RQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKL 496

Query: 344 EKALEVINT--SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           E+A   I+     P+  V W TLL SC +H+N+E+ E   + +  +++ + G YVL+  +
Sbjct: 497 EEAYNFISKMCVEPTGSV-WSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNM 555

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           YA     + +A+ R  ++  G++  P  SWIE+ N+ H FV  D+SHP  D I   L+ +
Sbjct: 556 YASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAV 615

Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
           M + +  GY  D S   V     E+   +    HSE+LA+AFG+  T  GT++R+ KN+R
Sbjct: 616 MEQMEKEGYVADTS--GVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIR 673

Query: 522 ------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                       S    R++IVRD  R+HHF  G CSCGDYW
Sbjct: 674 ICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 171/363 (47%), Gaps = 38/363 (10%)

Query: 45  FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
           F  +++P   AW S+IR F       +A+  +  M  AS   PD   F   LK+C  +  
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEM-RASGRCPDHNVFPSVLKSCTMMMD 120

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYA----------------------ANGV--- 139
           L   + +HGF++R G +  +     LM  YA                      +N     
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDED 180

Query: 140 -----------IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188
                      I++ R VF+ MP +D+VS+N+II+ Y Q+  + +AL++   M   D+  
Sbjct: 181 VKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKP 240

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
           D FTL  +L   +    +  G  +H      G    VY+G++LVDMYAK   ++ +  VF
Sbjct: 241 DSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
           SR+  RD +SWNS++ GY  +GR +EA+  F+QM+ A   P ++ F  ++  C+H   + 
Sbjct: 301 SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLH 360

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            G +  H  V R      I     LVD+Y + G ++ A ++ +  +  D V W  ++   
Sbjct: 361 LGKQ-LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGH 419

Query: 369 KIH 371
            +H
Sbjct: 420 ALH 422



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 130/249 (52%), Gaps = 5/249 (2%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA   S+ +  ++ +F+++      +WNSL+  + Q+    +A+  +  M+ A
Sbjct: 280 GSSLVDMYA--KSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTA 337

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            + +P    F+  + AC  +  L+  ++LHG+V+R G+   + +++ L+  Y+  G I+A
Sbjct: 338 KV-KPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKA 396

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR +FD M   D VSW +II  +       EA+ L+E M+ + V  +    V +L++C+H
Sbjct: 397 ARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSH 456

Query: 203 VGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WN 260
           VG ++    + + +    G  + +    A+ D+  + G L+ A+   S+M      S W+
Sbjct: 457 VGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWS 516

Query: 261 SMIVGYGVH 269
           +++    VH
Sbjct: 517 TLLSSCSVH 525



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 131/311 (42%), Gaps = 46/311 (14%)

Query: 96  LKACERVKALNKCQELHGFVIR----SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           +K   R+K+ ++ ++LH   IR    S     +V+S      Y    ++  A  +F  + 
Sbjct: 12  IKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISI-----YTNLKLLHEALLLFKTLK 66

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
              +++W S+I C+T  S   +AL  +  MR      D      +L SC  +  L  G  
Sbjct: 67  SPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGES 126

Query: 212 LHRIACEMGFVESVYVGNALVDMYAK---------CGN---------------------- 240
           +H     +G    +Y GNAL++MYAK          GN                      
Sbjct: 127 VHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETC 186

Query: 241 -----LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
                +DS   VF  M ++DV+S+N++I GY   G  ++A+   ++M      PDS T  
Sbjct: 187 IMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 246

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
            +L   S    V +G E  H  V R  +   +     LVD+Y ++ ++E +  V +    
Sbjct: 247 SVLPIFSEYVDVIKGKE-IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYC 305

Query: 356 SDPVLWRTLLG 366
            D + W +L+ 
Sbjct: 306 RDGISWNSLVA 316


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 197/544 (36%), Positives = 299/544 (54%), Gaps = 20/544 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+N Y      +L  A  +F QI N    +W+S+I AFAQS     AI     M + 
Sbjct: 257 GTALINLYG--KCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLE 314

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            + RP+  TF   L+A   +KA    +E+H  ++++GY   V +++ L++ Y   G +E 
Sbjct: 315 GV-RPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVET 373

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           ARS+F++  ERD+VSW+S+I+ Y+Q      AL L+  M  + V  +  T V  + +CA 
Sbjct: 374 ARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAG 433

Query: 203 VGALNMGIFLH-RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
           VGAL  G  LH R+ C +G  + V V  ALV++Y KCG L+ A  VF  M+K+++L+W S
Sbjct: 434 VGALRRGTQLHERVRC-LGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTS 492

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           + + YG +G G  ++     M + G  PD I F+ +L  C++ G + +G+ Y+++M   +
Sbjct: 493 IAMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDF 552

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
            + P ++H GC+VD+ GRAGKLE A ++INT      + W  LL +CK H +      A 
Sbjct: 553 GIAPAVEHCGCMVDILGRAGKLEAAEQLINTMKFESSLAWMMLLTACKAHNDTARAARAA 612

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           + + QLE  +A  YVLL++++      E    TR+ +   G++   G S IEIG++VH+F
Sbjct: 613 EKIFQLEPKNATPYVLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEIGDRVHEF 672

Query: 442 VV--DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
           V   D   H     I+  LE++    +  GY  D + V +     E   E +  YHSE L
Sbjct: 673 VAASDVLPHHLVGEIFAALEKLGREMQGAGYVPDATAVRLR-DVEEGGKENAVPYHSEML 731

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           A+  G+ +TP GT LRI KNLR            S    R + VRD  R+HHF +G+CSC
Sbjct: 732 ALGLGIISTPAGTPLRITKNLRMCSDCHIATKFVSKLVHRRISVRDGRRHHHFENGVCSC 791

Query: 548 GDYW 551
           GDYW
Sbjct: 792 GDYW 795



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 169/322 (52%), Gaps = 3/322 (0%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+ IQ+P   +W  +I A+AQ+   ++ +   + M  A + +PD +TFT  L AC  V 
Sbjct: 174 VFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGV-KPDGYTFTTVLGACTAVG 232

Query: 104 ALNKCQELHGFVIRS-GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
           AL + + LH   I S G +R   V T L+  Y   G +E A  VF  +  +D+VSW+S+I
Sbjct: 233 ALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMI 292

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           + + Q+     A++L   M  E V  +  T V +L +   + A   G  +H    + G+ 
Sbjct: 293 AAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYS 352

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
           + V + +ALV MY   G +++A  +F   R+RDV+SW+SMI GY  +     A+S F++M
Sbjct: 353 DDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREM 412

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
            + G  P+S+TF+  +  C+  G +  G +  H  V    L   +     LV+LYG+ G+
Sbjct: 413 EVDGVQPNSVTFVSAIDACAGVGALRRGTQ-LHERVRCLGLDKDVPVATALVNLYGKCGR 471

Query: 343 LEKALEVINTSSPSDPVLWRTL 364
           LE+A  V       + + W ++
Sbjct: 472 LEEAEAVFLGMKKKNLLTWTSI 493



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 165/324 (50%), Gaps = 4/324 (1%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT-FTLKACERV 102
           +F+++++    AW SLI AF  +     A+  +  ML++ +S PD  TFT   LK   R 
Sbjct: 72  VFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVS-PDRITFTSILLKWSGRE 130

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
           + L++ + +H  ++++GYE   +V   ++  Y   G +E A +VFD++ + ++ SW  II
Sbjct: 131 RNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIII 190

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA-CEMGF 221
           + Y Q    +E L+L  RM    V  DG+T   +L +C  VGAL     LH       G 
Sbjct: 191 AAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGL 250

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
                VG AL+++Y KCG L+ AF VF ++  +D++SW+SMI  +   G+   AI     
Sbjct: 251 DRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLML 310

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           M + G  P+++TF+ +L   +     + G E  H  + +      +     LV +Y   G
Sbjct: 311 MDLEGVRPNNVTFVNVLEAVTSLKAFQYGKE-IHARIVQAGYSDDVCLTSALVKMYCNWG 369

Query: 342 KLEKALEVINTSSPSDPVLWRTLL 365
            +E A  +  +S   D V W +++
Sbjct: 370 WVETARSIFESSRERDVVSWSSMI 393



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 132/278 (47%), Gaps = 6/278 (2%)

Query: 96  LKACERVKALNKCQELHGFVIRSGY---ERC--VVVSTNLMRGYAANGVIEAARSVFDNM 150
           L AC  ++AL + + +HG V+R      ER    ++   +++ Y   G  + A  VFD M
Sbjct: 17  LTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDRM 76

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC-LLSSCAHVGALNMG 209
            ++++V+W S+IS +T A    +A+ L+ +M    V  D  T    LL        L+ G
Sbjct: 77  KDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEG 136

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H    + G+     V N +V+MY KCG+++ A  VF  ++  +V SW  +I  Y  +
Sbjct: 137 KRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQN 196

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G   E +    +M  AG  PD  TF  +L  C+  G +EE        +S   L      
Sbjct: 197 GHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAV 256

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
              L++LYG+ G LE+A  V       D V W +++ +
Sbjct: 257 GTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAA 294



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 92/179 (51%), Gaps = 9/179 (5%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVES-----VYVGNALVDMYAKCGNLDSAFCVFSR 250
           +L++C+ + AL  G  +H +      ++        + N ++ MY +CG  D A  VF R
Sbjct: 16  ILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDR 75

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS--HQGLVE 308
           M+ ++V++W S+I  +   G   +A+  F++ML++G  PD ITF  +L   S   + L E
Sbjct: 76  MKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDE 135

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
               + H+M + Y     + +   +V++YG+ G +E+A  V ++    +   W  ++ +
Sbjct: 136 GKRVHSHIMQTGYEGDRMVMNL--VVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAA 192


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 188/486 (38%), Positives = 280/486 (57%), Gaps = 7/486 (1%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F+++       W +LI  F+Q+  P  A+  +  ML   L +P+ FT +  LK
Sbjct: 139 LDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGL-QPNHFTLSSLLK 197

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A      L+   +LH F ++ GY+  V V + L+  YA  G ++AA+  FD MP +  VS
Sbjct: 198 ASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS 257

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++IS + +      AL L  +M+ ++     FT   + S+CA +GAL  G ++H    
Sbjct: 258 WNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMI 317

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G     ++GN L+DMYAK G++D A  VF R+ K DV+SWN+M+ G   HG G E + 
Sbjct: 318 KSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLD 377

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+QML  G  P+ I+FL +L  CSH GL++EG+ YF +M  +Y ++P + HY   VDL 
Sbjct: 378 RFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLL 436

Query: 338 GRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GR G L++A   I    P +P   +W  LLG+C++H+N+E+G  A +   +L+   +G  
Sbjct: 437 GRVGLLDRAERFIR-EMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPR 495

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           +LL+ IYA       VA+ RK++K +G+K  P  SW+EI N VH FV +D++HP    I 
Sbjct: 496 MLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIR 555

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
            K EEI  + K IGY  D S V +     E   E+   YHSEKLA+AF L  TP G+ +R
Sbjct: 556 GKWEEISGKIKEIGYVPDTSHVLLFVDQQER--EEKLQYHSEKLALAFALLNTPTGSPIR 613

Query: 516 IVKNLR 521
           I KN+R
Sbjct: 614 IKKNIR 619



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 2/286 (0%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAARS 145
           PD   ++  LK C R+  + + + +H  ++ S + +  +V+   ++  YA  G ++ AR 
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD MP +D+V+W ++I+ ++Q +   +AL L+ +M    +  + FTL  LL +      
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHG 204

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L+ G  LH    + G+  SVYVG+ALVDMYA+CG++D+A   F  M  +  +SWN++I G
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISG 264

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           +   G G+ A+    +M    F P   T+  +   C+  G +E+G ++ H  + +  LK 
Sbjct: 265 HARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQG-KWVHAHMIKSGLKL 323

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
                  L+D+Y +AG ++ A  V +     D V W T+L  C  H
Sbjct: 324 IAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369


>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Brachypodium distachyon]
          Length = 648

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 187/450 (41%), Positives = 275/450 (61%), Gaps = 29/450 (6%)

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V+  L+  YA  G    AR VFD MP   RDLVSWN+++S ++Q    ++AL LY RMR 
Sbjct: 204 VANCLISVYARRGA-ALARQVFDEMPAASRDLVSWNAVLSAHSQNGLAVDALDLYSRMRG 262

Query: 184 ED---VGLDGFTLVCLLSSCAHVGALNMGIFLHRI--ACEMGFVESVYVGNALVDMYAKC 238
            D   V  D  TLV +LSSCAH+GA ++G+ + R       GF  +V + NAL++ YA+C
Sbjct: 263 CDGHGVEPDAVTLVSVLSSCAHLGARSVGLGVERYMRGKLPGFRTNVQLCNALINFYARC 322

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G L  A  +F+ M ++ ++SW ++I GYG+HG G+ AI+ F+ M+  G  PD++  +GLL
Sbjct: 323 GCLPQAQQLFNEMPRKSIVSWTALITGYGMHGHGEVAINLFQTMVSEGIRPDNVAMVGLL 382

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSD 357
             CSH G+ +EG +YF  M S Y L+P ++HY C+VDL GRAG+L++A E+I++   P+D
Sbjct: 383 SACSHAGMYDEGRKYFSAMESAYQLRPTLEHYTCMVDLLGRAGRLKEARELISSMPMPAD 442

Query: 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
             +W  LLG+CKIH+NVEIGE A ++++++E  + G YVL+A IY  T   + V R R +
Sbjct: 443 GAVWGALLGACKIHKNVEIGEEAFEHVIEVEPTNVGYYVLMANIYTDTGQLDCVVRVRAM 502

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV 477
           ++  G+K  PG S++E   +VH F+ DD SHP A  IY   E ++   + +    D ++ 
Sbjct: 503 MRERGLKKEPGCSYVEHKGRVHLFMADDHSHPQAKRIY---ELVLKLEQMVKEKTDGTVG 559

Query: 478 AVSGSSSEDFLEKSS----AYHSEKLAIAFGLATTPDGTSLRIVKNLR------------ 521
              G   E   EK++     +HSEKLA+AFG+  T  G+ + ++KNLR            
Sbjct: 560 IQGGRMIEGHSEKTAVPLIGFHSEKLAVAFGMLNT-VGSEIAVIKNLRVCGNCHSFLKTV 618

Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           S   +R  +VRD  R+H F DG CSC DYW
Sbjct: 619 SAIANRVFLVRDASRFHRFEDGACSCKDYW 648


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/525 (36%), Positives = 289/525 (55%), Gaps = 18/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+LLF +I+     + N++I  F  +     ++  +  +L +S  R  + T    +    
Sbjct: 85  ARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELL-SSGERVSSSTIVGLIPVYS 143

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
                  C  +HGF ++ G      VST L   Y     +  AR +FD   E+ L SWN+
Sbjct: 144 PFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNA 203

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS  TQ      A+ L++ M+  +V  +  T+  +LS+CA +GAL++G ++H +     
Sbjct: 204 MISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNR 263

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F  +VYV  AL+DMYAKCG++  A  +F  M +++ ++WN+MI GYG+HG G EA+  F 
Sbjct: 264 FESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFY 323

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            ML +   P  +TFL +L  CSH GLV+EG   FH MV  +  +P  +HY C+VD+ GRA
Sbjct: 324 DMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRA 383

Query: 341 GKLEKALEVINTSS--PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G+L+KALE I      P  PV W  LLG+C IH++  +  +A + L +L+  + G YVL+
Sbjct: 384 GQLKKALEFIKAMPVEPGPPV-WGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLM 442

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + IY+  +     A  R++ K   +  TPG + IEIG   H F   D+SHP +  IY +L
Sbjct: 443 SNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAEL 502

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           +++  +    G+  + + V       E   E +   HSEKLAIAFGL +T  G  +RI+K
Sbjct: 503 DKLTGKMTEAGFQTETTTVLHDLEEEEK--ELTMKVHSEKLAIAFGLISTEPGAEIRIIK 560

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S    R ++VRD  R+HHF+DGLCSCGDYW
Sbjct: 561 NLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 167/363 (46%), Gaps = 11/363 (3%)

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           +I  F ++     +I  +  M++ +  R D  T    L A   ++ L    ++    I+ 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G+   V + T L+  ++  G +E AR +F  + ++DL+S N++IS +T      ++++L+
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
           + +      +   T+V L+   +  G   +   +H    ++G V    V  AL  +Y + 
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
             +  A  +F    ++ + SWN+MI G   +G  D AIS F+ M     +P+ +T   +L
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C+  G +  G E+ H ++     +  +     L+D+Y + G +  A E+ +     + 
Sbjct: 241 SACAQIGALSLG-EWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNE 299

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD--YVLLATIYACT-----KDEEGV 411
           V W  ++    +H +   G+ A+K    + ++S        L+ +YAC+     K+ +G+
Sbjct: 300 VTWNAMISGYGLHGH---GQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGI 356

Query: 412 ART 414
             T
Sbjct: 357 FHT 359


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 207/530 (39%), Positives = 300/530 (56%), Gaps = 19/530 (3%)

Query: 38  LSYAQLLFNQIQNP-QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +S A+ +F+++ N      WN LIRA+A+      AI  Y  ML     +PD FT+   L
Sbjct: 119 VSLARRVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVL 178

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           KAC  +  L+  +E+H  V+R+ +   V V T L+  YA  G ++ A +VF++   RD  
Sbjct: 179 KACAALLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAA 238

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            WNS+I+   Q     EAL L   M  E +     TLV  +S+ A   AL  G  LH   
Sbjct: 239 VWNSMIAACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYG 298

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              GF     +  +L+DMYAK G +  A  +F ++  R+++SWN+MI G+G+HG  D A 
Sbjct: 299 WRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAF 358

Query: 277 SFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
             F +M   A   PD ITF+G+L  C+H G+V+E  E F +MV+ Y++KP ++HY CLVD
Sbjct: 359 ELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVD 418

Query: 336 LYGRAGKLEKALEVINTS-SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           + G +G+ ++A +VI       D  +W  LL  CKIH+NVE+ E+A++ L++LE   AG+
Sbjct: 419 VLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGN 478

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ IYA +   E  AR RKL+ + G+K     SWIE+  + H F+V D SHP +D I
Sbjct: 479 YVLLSNIYAESGKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDI 538

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY-HSEKLAIAFGLATTPDGTS 513
           Y +LE +       GY  D + V     + ED  +++  + HSE+LAIAFGL +TP  T 
Sbjct: 539 YEELERLEGLISQTGYVPDTTPVF---HNVEDDEKRNMVWGHSERLAIAFGLISTPPRTK 595

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L + KNLR            S    R++I+RD  RYHHF +G CSC D+W
Sbjct: 596 LLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 3/253 (1%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
            +   L++C   +A+   ++LH  ++ SG     V++T L+  YA+ G +  AR VFD M
Sbjct: 70  NYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEM 129

Query: 151 PER-DLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNM 208
           P + ++  WN +I  Y +      A++LY  M  +  +  D FT   +L +CA +  L+ 
Sbjct: 130 PNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSA 189

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G  +H       +   V+V   L+DMYAKCG +D A+ VF+    RD   WNSMI   G 
Sbjct: 190 GREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQ 249

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +GR  EA++  + M   G  P   T +  +   +    +  G E  H    R       K
Sbjct: 250 NGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRE-LHGYGWRRGFGSQDK 308

Query: 329 HYGCLVDLYGRAG 341
               L+D+Y ++G
Sbjct: 309 LKTSLLDMYAKSG 321


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 199/545 (36%), Positives = 302/545 (55%), Gaps = 54/545 (9%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W  LI  ++++    +A+  +N ML   +  PD  T    L AC ++K L   + LH  
Sbjct: 204 SWTGLISGYSRAGRAAEAVDCFNSMLSDGIE-PDEVTVIGLLSACAQLKDLVFGRSLHKL 262

Query: 115 VIRSG--------------YERCVVVS------------------TNLMRGYAANGVIEA 142
           V   G              Y +C  +                     ++ GY   G ++ 
Sbjct: 263 VGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDV 322

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR +FD M +RDLV++NS+I+ Y       EAL L+ +MR  D+  D FT+V LL++CA 
Sbjct: 323 ARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACAS 382

Query: 203 VGALNMGIFLHRIAC-EMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
           +GAL  G  LH  AC E   VE  +Y+G AL+DMY KCG ++ A  VF  M  RDV +W+
Sbjct: 383 LGALPQGRALH--ACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWS 440

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           +MI G   +G G  A+ +F  M + GF P+S+T++ +L  CSH  L++EG  YF  M   
Sbjct: 441 AMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLL 500

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGE 378
           +N++P I+HYGC++DL GR+G L++A++++ T  P  P  V+W ++L +C++H++  +  
Sbjct: 501 HNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRT-MPMQPNAVIWASILSACRVHKDANLAR 559

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
            A ++L++LE      YV L  IY  ++  E  ++ R+L++  G+K   G+S I +  QV
Sbjct: 560 NAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQV 619

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           HKF+V D++HP    I   +EEI  R K +GY+   S + V     E   E +   HSEK
Sbjct: 620 HKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVDVDEEEK--EHALLAHSEK 677

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           +AIAFGL +      L I+KNLR            S  ++R++IVRDR R+HHFRDG CS
Sbjct: 678 IAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCS 737

Query: 547 CGDYW 551
           C D+W
Sbjct: 738 CNDFW 742



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 177/407 (43%), Gaps = 69/407 (16%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRA-FAQSLSPLQAIFYYNHMLMASL 84
           L+N +  +    L YA  LF+++    T  +++ +RA F  S  P   +  Y  M    +
Sbjct: 41  LVNCFTPTDPLHLRYALCLFDRMPC-STFLFDTALRACFRASSGPESPLILYRRMRRTGV 99

Query: 85  SRPDTFTFTFTLKACERVKA-LNKCQELHGFVIRSGYERCV-VVSTNLMRGYAANGVIEA 142
              D FTF F  K C R +A +  CQ LH    R+     V +VS  ++  Y   G+   
Sbjct: 100 CT-DAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGD 158

Query: 143 ARSVFDNMPERDLVSWNSIIS------------C-------------------YTQASFH 171
           AR  FD++P +D V+W ++IS            C                   Y++A   
Sbjct: 159 ARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRA 218

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
            EA+  +  M  + +  D  T++ LLS+CA +  L  G  LH++  E G + S  +  AL
Sbjct: 219 AEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVAL 278

Query: 232 VDMYAKCGNL--------------------------------DSAFCVFSRMRKRDVLSW 259
           +DMYAKCG++                                D A  +F +M  RD++++
Sbjct: 279 IDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTF 338

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           NS+I GY   GR  EA+  F QM       D+ T + LL  C+  G + +G    H  + 
Sbjct: 339 NSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQG-RALHACIE 397

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           +  ++  I     L+D+Y + G++E+A  V    S  D   W  ++ 
Sbjct: 398 QRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIA 444



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 106/263 (40%), Gaps = 36/263 (13%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  +FD MP    +   ++ +C+  +S     L LY RMR   V  D FT   L   CA 
Sbjct: 56  ALCLFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCAR 115

Query: 203 VGALNMGIFLHRIACEMGFVESV--YVGNALVDMY------------------------- 235
             A  +   +   AC    + S    V N ++ MY                         
Sbjct: 116 GRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWT 175

Query: 236 ------AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
                 AK G LD A+C+      R+V+SW  +I GY   GR  EA+  F  ML  G  P
Sbjct: 176 TVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEP 235

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           D +T +GLL  C+    +  G    H +V    +    K    L+D+Y + G + +A EV
Sbjct: 236 DEVTVIGLLSACAQLKDLVFG-RSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEV 294

Query: 350 INT-SSPSDPVLWRTLL-GSCKI 370
            +       P  W  ++ G CK+
Sbjct: 295 FDALGRGRRPQSWNAMIDGYCKL 317



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 113/252 (44%), Gaps = 5/252 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+Q+++     +NSLI  +       +A+  +  M    L R D FT    L AC 
Sbjct: 323 ARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDL-RADNFTMVSLLTACA 381

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + AL + + LH  + +   E  + + T L+  Y   G +E A  VF  M  RD+ +W++
Sbjct: 382 SLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSA 441

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIACEM 219
           +I+          AL+ +  M+ +    +  T + +L++C+H   L+ G ++   +    
Sbjct: 442 MIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLH 501

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISF 278
                +     ++D+  + G LD A  +   M  + + + W S++    VH   + A + 
Sbjct: 502 NIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNA 561

Query: 279 FKQMLMAGFHPD 290
            + +L     PD
Sbjct: 562 AEHLL--KLEPD 571


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 218/616 (35%), Positives = 316/616 (51%), Gaps = 76/616 (12%)

Query: 4   KKHARYVGLNKARQAHEIHGEWLLNSY------------AISVSSSLSYAQLLFNQIQNP 51
           +  A   G   A +A EIH   +  S             A + S  L  A  L  +  +P
Sbjct: 26  RAAALLAGCASASRAAEIHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDP 85

Query: 52  QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR----PDTFTFTFTLKACERVKALNK 107
               + S I A +       A+   + ML   LSR    P   T + +L AC     L  
Sbjct: 86  TAVFYTSAIHAHSSRGLHRAALALLSEML---LSRHGLLPTAHTLSASLPAC---GCLAV 139

Query: 108 CQELHGFVIR---SGY-----------------------------ERCVVVSTNLMRGYA 135
            + LHG+ ++   SG                              +  VV  T ++  YA
Sbjct: 140 GRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYA 199

Query: 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
             G ++ AR +FD +P +DLV WN+++  YTQ     EAL+L+ +M    V  D  ++V 
Sbjct: 200 KMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVL 259

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVY----VGNALVDMYAKCGNLDSAFCVFSRM 251
            LS+ A +G    G +LH      G    V     VG ALVDMY KCG+L+ A  VF  +
Sbjct: 260 ALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDL 319

Query: 252 R---KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
                RDV++WN+MI GY +HGR  EA+  F Q+   G  P  ITF+G+L  CSH GLV+
Sbjct: 320 GGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVD 379

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGS 367
           EG   F  M   Y + P ++HYGC+VDL GRAG++E+A +++ +  +  D  +W +LLG+
Sbjct: 380 EGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGA 439

Query: 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTP 427
           C++H+N+ +G+     LV    A++G YVLL+ +YA       V R R +++++G++  P
Sbjct: 440 CRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEP 499

Query: 428 GWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDF 487
           G S +E+G +V +FV  D+SHP +  IY KLEE+   A+  G+     LV      +   
Sbjct: 500 GCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAK- 558

Query: 488 LEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRV 535
            E++ A HSEKLA+AFGL +TP  T ++IVKNLR            S A  R ++ RDR 
Sbjct: 559 -ERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRN 617

Query: 536 RYHHFRDGLCSCGDYW 551
           R+HHF DG CSCGDYW
Sbjct: 618 RFHHFVDGSCSCGDYW 633


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 194/550 (35%), Positives = 296/550 (53%), Gaps = 39/550 (7%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLI------------RAFAQSLSPLQAIFYYNHMLMAS-- 83
             YA+ LF +I  P T ++N ++            R F  S+ PL+ +  +N M+ A   
Sbjct: 89  FEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSM-PLKDVASWNTMISALAQ 147

Query: 84  ---LSRPDTFTFTFTLKACERVKALNK----CQELHGFV--IRSGYERCVVVSTNLMRGY 134
              +            K C    A+      C +L   V    +   R V+  T ++ GY
Sbjct: 148 VGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGY 207

Query: 135 AANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLV 194
              G +E A  +F  M  R LV+WN++I+ Y +     + L+L+  M    V  +  +L 
Sbjct: 208 MKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLT 267

Query: 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
            +L  C+++ AL +G  +H++ C+         G +LV MY+KCG+L  A+ +F ++ ++
Sbjct: 268 SVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRK 327

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           DV+ WN+MI GY  HG G +A+  F +M   G  PD ITF+ +L  C+H GLV+ GV+YF
Sbjct: 328 DVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYF 387

Query: 315 HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRN 373
           + M   + ++   +HY C+VDL GRAGKL +A+++I +      P ++ TLLG+C+IH+N
Sbjct: 388 NTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKN 447

Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIE 433
           + + E A KNL++L+   A  YV LA +YA     + VA  R+ +K N +   PG+SWIE
Sbjct: 448 LNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIE 507

Query: 434 IGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA 493
           I + VH F   D+ HP+   I+ KL+++  + K  GY  D  L  V     E+  E+   
Sbjct: 508 INSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPD--LEFVLHDVGEELKEQLLL 565

Query: 494 YHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFR 541
           +HSEKLAIAFGL   P G  +R+ KNLR            S    R++IVRD  R+HHF+
Sbjct: 566 WHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFK 625

Query: 542 DGLCSCGDYW 551
           DG CSC DYW
Sbjct: 626 DGFCSCRDYW 635



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 151/364 (41%), Gaps = 64/364 (17%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE-ALKLYERMR 182
           V+ S  L+  Y   G I++A  VF++M  +  V+WNSI++ + +   H E A +L+E++ 
Sbjct: 41  VIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIP 100

Query: 183 FEDVGLDGFTLVC---------------------------LLSSCAHVGALNMGIFLHRI 215
             +       L C                           ++S+ A VG +     L   
Sbjct: 101 QPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSA 160

Query: 216 ACEM----------GFV-----------------ESVYVGNALVDMYAKCGNLDSAFCVF 248
             E           G+V                  SV    A++  Y K G ++ A  +F
Sbjct: 161 MPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLF 220

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
             M  R +++WN+MI GY  +GR ++ +  F+ ML  G  P++++   +L GCS+   ++
Sbjct: 221 QEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQ 280

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            G +  H +V +  L         LV +Y + G L+ A E+       D V W  ++   
Sbjct: 281 LGKQ-VHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGY 339

Query: 369 KIHRNVEIGEIAMKNLVQLEAAS-AGDYV-LLATIYACTKD---EEGVARTRKLIKSNGI 423
             H     G+ A++   +++      D++  +A + AC      + GV     + +  GI
Sbjct: 340 AQH---GAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGI 396

Query: 424 KTTP 427
           +T P
Sbjct: 397 ETKP 400



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 106/261 (40%), Gaps = 53/261 (20%)

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           +V   N L+  Y +CG++DSA  VF  M+ +  ++WNS++  +    +      + +Q+ 
Sbjct: 40  NVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAF---AKKPGHFEYARQLF 96

Query: 284 MAGFHPDSITF-LGLLCGCSHQGLVEEGVEYFHMM----VSRYN---------------- 322
                P+++++ + L C   H G V +   +F  M    V+ +N                
Sbjct: 97  EKIPQPNTVSYNIMLACHWHHLG-VHDARGFFDSMPLKDVASWNTMISALAQVGLMGEAR 155

Query: 323 -LKPGIKHYGC-----LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEI 376
            L   +    C     +V  Y   G L+ A+E    +     + W  ++        VE+
Sbjct: 156 RLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVEL 215

Query: 377 G-----EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL----IKSNGIKTT- 426
                 E++M+ LV   A  AG YV         + E+G+   R +    +K N +  T 
Sbjct: 216 AERLFQEMSMRTLVTWNAMIAG-YV------ENGRAEDGLRLFRTMLETGVKPNALSLTS 268

Query: 427 -----PGWSWIEIGNQVHKFV 442
                   S +++G QVH+ V
Sbjct: 269 VLLGCSNLSALQLGKQVHQLV 289


>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g04780-like [Glycine max]
          Length = 632

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 185/486 (38%), Positives = 284/486 (58%), Gaps = 27/486 (5%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           + FT +  L  C    A+ +C +LH F I++  +    V T L+  YA    I+ A  +F
Sbjct: 150 NEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVXTALLHVYAKCSSIKDASQMF 209

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           ++MPE++ V+W+S+++ Y Q  FH EAL L+   +      D F +   +S+CA +  L 
Sbjct: 210 ESMPEKNAVTWSSMMAGYVQNGFHDEALLLFHNAQLMGFDQDPFNISSAVSACAGLATLV 269

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR-MRKRDVLSWNSMIVGY 266
            G  +H ++ + GF  ++YV ++L+DMYAKCG +  A+ VF   +  R ++ WN+MI G+
Sbjct: 270 EGKQVHAMSHKSGFGSNIYVASSLIDMYAKCGCIREAYLVFEGFVEVRSIVLWNAMISGF 329

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
             H    EA+  F++M   GF PD +T++ +L  CSH GL EEG +YF +MV ++NL P 
Sbjct: 330 ARHALAQEAMILFEKMQQRGFFPDDVTYVSVLNACSHMGLHEEGQKYFDLMVRQHNLSPS 389

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLG-------SCKIHRNVEIGE 378
           + HY C++D+ GRAG ++KA ++I   S  +   +W ++ G       SC+I+ N+E  E
Sbjct: 390 VLHYSCMIDILGRAGLVQKAYDLIGRMSFNATSSMWGSVRGLSXLIKASCRIYGNIEFAE 449

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
           IA K+L ++E  +AG+++LLA IYA  K  + VAR RKL++   ++   G SWIEI N++
Sbjct: 450 IAAKHLFEMEPNNAGNHILLANIYAANKKSDEVARARKLLRETDVRKERGTSWIEIKNKI 509

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES--LVAVSGSSSEDFLEKSSAYHS 496
           H F V +++HP  D  Y KL+ ++   K + Y  D +  L  V  S     L     +HS
Sbjct: 510 HSFTVGERNHPQIDDNYAKLDNLVVELKKLNYKVDTNNDLHDVEESRKHMLL----GHHS 565

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           EKLAI FGL   P    +RI+KNLR            S   SR++IVRD  R+HHF+DGL
Sbjct: 566 EKLAITFGLVCLPTEIPIRIIKNLRICGDCHTFMKLVSKFASREIIVRDTNRFHHFKDGL 625

Query: 545 CSCGDY 550
           CSCG++
Sbjct: 626 CSCGEF 631



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 144/321 (44%), Gaps = 6/321 (1%)

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
           + L+ C +  +    +  H  +IR G E  ++ ST L+  Y+   ++ + R   D M  +
Sbjct: 55  YLLQLCAKTGSSMGGRACHAQIIRIGLEMDILTSTMLINMYSKCSLVHSTRKKXDEMLVK 114

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
            L+  N+ I   TQ +   +ALKL  RM+ E    + FT+  +L +CA   A+   + LH
Sbjct: 115 SLILXNTRIGALTQNAEDRKALKLLIRMQREVTPFNEFTISSVLCNCAFKCAILECMQLH 174

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
             + +     + +V  AL+ +YAKC ++  A  +F  M +++ ++W+SM+ GY  +G  D
Sbjct: 175 AFSIKAAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHD 234

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           EA+  F    + GF  D       +  C+    + EG +  H M  +      I     L
Sbjct: 235 EALLLFHNAQLMGFDQDPFNISSAVSACAGLATLVEG-KQVHAMSHKSGFGSNIYVASSL 293

Query: 334 VDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           +D+Y + G + +A  V          VLW  ++     H   +   I  + + Q      
Sbjct: 294 IDMYAKCGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKM-QQRGFFP 352

Query: 393 GDYVLLATIYACTK---DEEG 410
            D   ++ + AC+     EEG
Sbjct: 353 DDVTYVSVLNACSHMGLHEEG 373



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 113/228 (49%), Gaps = 5/228 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ YA    SS+  A  +F  +       W+S++  + Q+    +A+  +++  +    
Sbjct: 192 LLHVYA--KCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHDEALLLFHNAQLMGFD 249

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           + D F  +  + AC  +  L + +++H    +SG+   + V+++L+  YA  G I  A  
Sbjct: 250 Q-DPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIYVASSLIDMYAKCGCIREAYL 308

Query: 146 VFDNMPE-RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           VF+   E R +V WN++IS + + +   EA+ L+E+M+      D  T V +L++C+H+G
Sbjct: 309 VFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQRGFFPDDVTYVSVLNACSHMG 368

Query: 205 ALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
               G  +   +  +     SV   + ++D+  + G +  A+ +  RM
Sbjct: 369 LHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVQKAYDLIGRM 416


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 194/545 (35%), Positives = 304/545 (55%), Gaps = 29/545 (5%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LLN YA      L  A+ LF ++ +     W S+I  + ++  P +A+  Y  M     S
Sbjct: 120 LLNMYA--ACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFS 177

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD  T    + AC  +K L    +LH  +     + C V+ + L+  YA  G ++ AR 
Sbjct: 178 -PDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQ 236

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYER------MRFEDVGLDGFTLVCLLSS 199
           VFD + ++D+ +W+++I  Y + +   EAL+L+        MR  +V     T++ ++S+
Sbjct: 237 VFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEV-----TILAVISA 291

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           CA +G L  G ++H          SV + N+L+DM++KCG++D+A  +F  M  +D++SW
Sbjct: 292 CAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISW 351

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           NSM+ G  +HG G EA++ F  M      PD ITF+G+L  CSH GLV+EG + F+ + +
Sbjct: 352 NSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEA 411

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGE 378
            Y ++   +HYGC+VDL  RAG L +A E I       D  +W ++LG+C+++ N+E+GE
Sbjct: 412 LYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGE 471

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
            A + L++LE  + G Y+LL+ IYA  K    V + R+L+   GI+ TPG S + I N  
Sbjct: 472 EAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIA 531

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           H F+  D SHP+   I   L ++  + K +GY  D S V ++   ++   E+S + HSEK
Sbjct: 532 HSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKK--EESVSQHSEK 589

Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
           LA+ +GL  +  G  + I+KNLR            S  Y R + +RDR R+HHF+DG CS
Sbjct: 590 LALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCS 649

Query: 547 CGDYW 551
           C DYW
Sbjct: 650 CRDYW 654



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 192/372 (51%), Gaps = 3/372 (0%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  + YA  +F   +      WNS++RAF  S  P +A+  Y  ML  S + PD FTF  
Sbjct: 25  SLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPS 84

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            LK C  +      + LHG V++      + + T L+  YAA G +++AR +F+ M  R+
Sbjct: 85  LLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRN 144

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            V W S+IS Y +     EAL LY++M  +    D  T+  L+S+CA +  L +G+ LH 
Sbjct: 145 KVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHS 204

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              EM       +G+ALV+MYAKCG+L +A  VF ++  +DV +W+++I GY  + R  E
Sbjct: 205 HIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTE 264

Query: 275 AISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           A+  F+++   +   P+ +T L ++  C+  G +E G  + H  ++R      +     L
Sbjct: 265 ALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-RWVHDYITRTQKGHSVSLNNSL 323

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           +D++ + G ++ A  + ++ S  D + W +++    +H  +    +A  +L+Q       
Sbjct: 324 IDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALH-GLGREALAQFHLMQTTDLQPD 382

Query: 394 DYVLLATIYACT 405
           +   +  + AC+
Sbjct: 383 EITFIGVLTACS 394


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 192/542 (35%), Positives = 300/542 (55%), Gaps = 18/542 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL  YA   S  +  AQ LF ++       W+ +I  +AQS    +A+  +  M   
Sbjct: 275 GIALLELYA--KSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQT 332

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
           S+  P+ FTF   L+AC    +L+  +++H  V++ G    V VS  +M  YA  G IE 
Sbjct: 333 SVV-PNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIEN 391

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           +  +F+ +P+R+ V+WN+II  Y Q      A+ L+  M   D+     T   +L + A 
Sbjct: 392 SMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASAS 451

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL  G+ +H +  +  + +   V N+L+DMYAKCG ++ A   F +M KRD +SWN+M
Sbjct: 452 LAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAM 511

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I GY +HG   EA++ F  M      P+ +TF+G+L  CS+ GL+ +G  +F  M   Y+
Sbjct: 512 ICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYD 571

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL-WRTLLGSCKIHRNVEIGEIAM 381
           +KP I+HY C+V L GR G+ ++A+++I   +    V+ WR LLG+C IH+ V++G +  
Sbjct: 572 IKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCA 631

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           ++++++E      +VLL+ +YA     + VA  RK ++   ++  PG SW+E    VH F
Sbjct: 632 QHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYF 691

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
            V D SHPD  +I   LE +  + +  GY  D + V +     E   E+    HSE+LA+
Sbjct: 692 SVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEK--ERHLWVHSERLAL 749

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           A+GL  TP   S+RI+KNLR            S    R++++RD  R+HHFR G+CSCGD
Sbjct: 750 AYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGD 809

Query: 550 YW 551
           YW
Sbjct: 810 YW 811



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 200/384 (52%), Gaps = 7/384 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+++Y  SV  ++  A+ +F+ I      +W  ++  +A++    +++  +N M + 
Sbjct: 174 GTALIDAY--SVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIM 231

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
              +P+ FT +  LK+C  ++A N  + +HG  ++  Y+  + V   L+  YA +G I  
Sbjct: 232 GY-KPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIID 290

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A+ +F+ MP+ DL+ W+ +I+ Y Q+    EAL L+ RMR   V  + FT   +L +CA 
Sbjct: 291 AQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACAS 350

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
             +L++G  +H    + G   +V+V NA++D+YAKCG ++++  +F  +  R+ ++WN++
Sbjct: 351 SVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTI 410

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV-SRY 321
           IVGY   G G+ A++ F  ML     P  +T+  +L   +    +E G++   + + + Y
Sbjct: 411 IVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMY 470

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           N    +     L+D+Y + G++  A    +  +  D V W  ++    +H  + +  + +
Sbjct: 471 NKDTVVA--NSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMH-GMSMEALNL 527

Query: 382 KNLVQLEAASAGDYVLLATIYACT 405
            +++Q           +  + AC+
Sbjct: 528 FDMMQHTDCKPNKLTFVGVLSACS 551



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 172/340 (50%), Gaps = 4/340 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LLN Y    S+SL  A  LF+++    T ++ +L + +++     QA+ +   +      
Sbjct: 76  LLNFYV--QSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEG-H 132

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
             + F FT  LK    +   + C  LH  V + G+     V T L+  Y+  G ++ AR 
Sbjct: 133 EVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARH 192

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD++  +D+VSW  +++CY +  F+ E+L+L+ +MR      + FT+   L SC  + A
Sbjct: 193 VFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEA 252

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
            N+G  +H  A +  +   ++VG AL+++YAK G +  A  +F  M K D++ W+ MI  
Sbjct: 253 FNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIAR 312

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y    R  EA+  F +M      P++ TF  +L  C+    ++ G +  H  V ++ L  
Sbjct: 313 YAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQ-IHSCVLKFGLNS 371

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +     ++D+Y + G++E ++++       + V W T++
Sbjct: 372 NVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTII 411



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 122/268 (45%), Gaps = 21/268 (7%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           + LH  +++ G    +     L+  Y  +  ++ A  +FD MP+ + +S+ ++   Y++ 
Sbjct: 55  KHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRD 114

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
               +AL    R+  E   ++ F    LL     +   ++   LH    ++G     +VG
Sbjct: 115 HQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVG 174

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
            AL+D Y+  GN+D A  VF  +  +D++SW  M+  Y  +   +E++  F QM + G+ 
Sbjct: 175 TALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYK 234

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC----------LVDLYG 338
           P++ T  G L  C        G+E F++  S +    G    GC          L++LY 
Sbjct: 235 PNNFTISGALKSCL-------GLEAFNVGKSVH----GCALKGCYDHDLFVGIALLELYA 283

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLLG 366
           ++G++  A  +      +D + W  ++ 
Sbjct: 284 KSGEIIDAQRLFEEMPKTDLIPWSLMIA 311


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 199/539 (36%), Positives = 300/539 (55%), Gaps = 36/539 (6%)

Query: 44  LFNQIQNPQTQ----AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           LF Q+Q  + +     W++ I  +AQ     +A+     ML + + +P+  T    L  C
Sbjct: 317 LFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI-KPNEVTLISVLSGC 375

Query: 100 ERVKALNKCQELHGFVIR-------SGYERCVVVSTNLMRGYAANGVIEAARSVFDNM-- 150
             V AL   +E+H + I+       +G+    +V   L+  YA    ++ AR++FD++  
Sbjct: 376 ASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSP 435

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNM 208
            ERD+V+W  +I  Y+Q     +AL+L   M  ED     + FT+ C L +CA + AL++
Sbjct: 436 KERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSI 495

Query: 209 GIFLHRIAC-EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           G  +H  A         ++V N L+DMYAKCG++  A  VF  M +++ ++W S++ GYG
Sbjct: 496 GKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYG 555

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           +HG G+EA+  F++M   GF  D +T L +L  CSH G++++G+EYF+ M + + + PG 
Sbjct: 556 MHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGP 615

Query: 328 KHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           +HY CLVDL GRAG+L  AL +I        PV+W  LL  C+IH  VE+GE A K + +
Sbjct: 616 EHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITE 675

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
           L + + G Y LL+ +YA     + V R R L++  GIK  PG SW+E       F V DK
Sbjct: 676 LASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDK 735

Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           +HP A  IY+ L + M R K IGY  +   +L  V     +D L +    HSEKLA+A+G
Sbjct: 736 THPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFE----HSEKLALAYG 791

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + TTP G ++RI KNLR            S     ++I+RD  R+HHF++GLCSC  YW
Sbjct: 792 ILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/398 (31%), Positives = 187/398 (46%), Gaps = 58/398 (14%)

Query: 27  LNSYAISVSSSL---SYAQLLFNQIQNPQTQA----WNSLIRAFAQSLSPLQAIFYYNHM 79
           L S+ IS   SL   S+A  L  +   P + A    WNSLIR++  +    + +  +   
Sbjct: 61  LTSHLISTYISLGCLSHAVSLLRRF--PPSDAGVYHWNSLIRSYGNNGRANKCLSSF--C 116

Query: 80  LMASLS-RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
           LM SLS  PD +TF F  KAC  + ++      H     +G+   V V   L+  Y+  G
Sbjct: 117 LMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCG 176

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLL 197
            +  AR VFD MP  D+VSWNSII  Y +      AL+++ +M  E     D  TLV +L
Sbjct: 177 SLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVL 236

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
             CA VG  ++G   H  A     +++++VGN LVDMYAK G +D A  VFS M  +DV+
Sbjct: 237 PPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVV 296

Query: 258 SWNSMIVGYGVHGRGDEAISFF-----------------------------------KQM 282
           SWN+M+ GY   GR ++A+  F                                   +QM
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG-------CLVD 335
           L +G  P+ +T + +L GC+  G +  G E  H    +Y +      +G        L+D
Sbjct: 357 LSSGIKPNEVTLISVLSGCASVGALMHGKE-IHCYAIKYPMDLRKNGHGDENMVINQLID 415

Query: 336 LYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIH 371
           +Y +  K++ A  + ++ SP   D V W  ++G    H
Sbjct: 416 MYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQH 453


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 206/563 (36%), Positives = 311/563 (55%), Gaps = 57/563 (10%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           YA+ +   +Q      W ++IR +A      +AI  Y  M    ++ P +FTF+  LKAC
Sbjct: 101 YARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEIT-PVSFTFSALLKAC 159

Query: 100 ERVKALNKCQELHGFVIR-SGY------------------------------ERCVVVST 128
             +K LN  ++ H    R  G+                              ER V+  T
Sbjct: 160 GTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWT 219

Query: 129 NLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188
            L+  YA  G +E A  +F+++P +D+V+W ++++ + Q +   EAL+ ++RM    +  
Sbjct: 220 ELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRA 279

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES--VYVGNALVDMYAKCGNLDSAFC 246
           D  T+   +S+CA +GA        +IA + G+  S  V +G+AL+DMY+KCGN++ A  
Sbjct: 280 DEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVN 339

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQG 305
           VF  M  ++V +++SMI+G   HGR  EA+  F  M+      P+++TF+G L  CSH G
Sbjct: 340 VFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSG 399

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS--PSDPVLWRT 363
           LV++G + F  M   + ++P   HY C+VDL GR G+L++ALE+I T S  P   V W  
Sbjct: 400 LVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGV-WGA 458

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LLG+C+IH N EI EIA ++L +LE    G+Y+LL+ +YA   D  GV R RKLIK  G+
Sbjct: 459 LLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGL 518

Query: 424 KTTPGWSWIEIGN-QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA--VS 480
           K TP  SW+   N Q+HKF   + +HP ++ I  KLEE++ R   +GY  D S V   VS
Sbjct: 519 KKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVS 578

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
            ++    L +    H+EKLA+AF L TT   +++ I+KNLR            S    + 
Sbjct: 579 DNAKRLILIQ----HTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKV 634

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +I+RD +R+HHFR G CSCGD+W
Sbjct: 635 IIMRDNMRFHHFRSGDCSCGDFW 657



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 34/279 (12%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI--EAARSVFDNMPERDLVSWNSII 162
           LN+ +++HG V+R G ++   + T L+R     GV     AR V + +  R+   W ++I
Sbjct: 62  LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVI 121

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
             Y       EA+ +Y  MR E++    FT   LL +C  +  LN+G   H     +   
Sbjct: 122 RGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGF 181

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS------------------------ 258
             VYVGN ++DMY KC ++D A  VF  M +RDV+S                        
Sbjct: 182 CFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESL 241

Query: 259 -------WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
                  W +M+ G+  + +  EA+ +F +M  +G   D +T  G +  C+  G  +   
Sbjct: 242 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYAD 301

Query: 312 EYFHM-MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
               +   S Y+    +     L+D+Y + G +E+A+ V
Sbjct: 302 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNV 340



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 47/320 (14%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++  A  LF  +      AW +++  FAQ+  P +A+ Y++ M  + + R D  T    +
Sbjct: 230 NMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI-RADEVTVAGYI 288

Query: 97  KACERVKALNKCQELHGFVIRSGYERC--VVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            AC ++ A            +SGY     VV+ + L+  Y+  G +E A +VF +M  ++
Sbjct: 289 SACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKN 348

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           + +++S+I          EAL L+  M  + ++  +  T V  L +C+H G ++ G    
Sbjct: 349 VFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQG---- 404

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
                      V+               DS +  F     RD   +  M+   G  GR  
Sbjct: 405 ---------RQVF---------------DSMYQTFGVQPTRD--HYTCMVDLLGRTGRLQ 438

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGC---SHQGLVEEGVEYFHMMVSRYNLKPG-IKH 329
           EA+   K M      P    +  LL  C   ++  + E   E+       + L+P  I +
Sbjct: 439 EALELIKTM---SVEPHGGVWGALLGACRIHNNPEIAEIAAEHL------FELEPDIIGN 489

Query: 330 YGCLVDLYGRAGKLEKALEV 349
           Y  L ++Y  AG     L V
Sbjct: 490 YILLSNVYASAGDWGGVLRV 509


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 199/566 (35%), Positives = 297/566 (52%), Gaps = 53/566 (9%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           +  L+ A+ +F  +      AWN++I  +       +A+     M    + + D  T+T 
Sbjct: 236 NDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGI-QFDDITYTT 294

Query: 95  TLKACERVKALNKCQELHGFVIRS----GYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
            + AC  V +    +++H +++++     +  C+ VS  L+  Y  N  ++ AR +F  M
Sbjct: 295 IISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAM 354

Query: 151 PERDLVSWNSIISCYT-------------------------------QASFHLEALKLYE 179
           P R++++WN+I+S Y                                Q  F  E LKL++
Sbjct: 355 PVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFK 414

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           +MR +      F     L++C+ +GAL  G  LH     +G+  S+ VGNA++ MYAKCG
Sbjct: 415 QMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCG 474

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            +++A  VF  M   D++SWNSMI   G HG G +AI  F QML  G  PD ITFL +L 
Sbjct: 475 VVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLT 534

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT--SSPSD 357
            CSH GLVE+G  YF+ M+  Y + P   HY  +VDL+ RAG    A  VI++  S P  
Sbjct: 535 ACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGA 594

Query: 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
           PV W  LL  C+IH N+++G  A + L +L   + G YVLL+ IYA       VA+ RKL
Sbjct: 595 PV-WEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKL 653

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV 477
           ++   ++  P  SWIE+ N+VH F+VDD  HP+   +YR LE++    K +GY  D   V
Sbjct: 654 MRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFV 713

Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
                  +   E + + HSEKLA+ FG+   P G ++R+ KN+R            S   
Sbjct: 714 LHDMEYEQK--EHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVA 771

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R++IVRDR R+HHF++G CSC DYW
Sbjct: 772 RREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 200/504 (39%), Gaps = 115/504 (22%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ--SLSPLQAIF-----------YYNHMLM 81
           SS+L YA+ LF +I NP   A  +LI A+    +L   + IF           +YN M+ 
Sbjct: 61  SSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMIT 120

Query: 82  ASLS-------------------RPDTFTFTFTLKACER-VKALNKCQELHGFVIRSGY- 120
                                  RPD FTFT  L A    V    +C ++H  V+++G  
Sbjct: 121 GYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMG 180

Query: 121 ---------------------------------------ERCVVVSTNLMRGYAANGVIE 141
                                                  +R  +  T ++ GY  N  + 
Sbjct: 181 CVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLN 240

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            AR VF+ M E    +WN++IS Y       EAL L  +MRF  +  D  T   ++S+CA
Sbjct: 241 GAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACA 300

Query: 202 HVGALNMGIFLHR--IACEMGFVES--VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           +VG+  MG  +H   +  E+    S  + V NAL+ +Y K   +D A  +F  M  R+++
Sbjct: 301 NVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNII 360

Query: 258 SWNSMIVGYGVHGR-------------------------------GDEAISFFKQMLMAG 286
           +WN+++ GY   GR                               GDE +  FKQM + G
Sbjct: 361 TWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDG 420

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
           F P    F G L  CS  G +E G +  H  +     +  +     ++ +Y + G +E A
Sbjct: 421 FEPCDFAFAGALTACSVLGALENGRQ-LHAQLVHLGYESSLSVGNAMISMYAKCGVVEAA 479

Query: 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
             V  T    D V W +++ +   H +  +  I + + +  E         L  + AC+ 
Sbjct: 480 ESVFVTMPSVDLVSWNSMIAALGQHGH-GVKAIELFDQMLKEGVFPDRITFLTVLTACSH 538

Query: 407 D---EEGVARTRKLIKSNGIKTTP 427
               E+G      +++S GI  TP
Sbjct: 539 AGLVEKGRHYFNSMLESYGI--TP 560



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 101/248 (40%), Gaps = 37/248 (14%)

Query: 231 LVDMYAKCGNLDSAFCVF--SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           L+  Y   GNL+    +F  + +  RD + +N+MI GY  +G G  A+  F+ M    F 
Sbjct: 85  LITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFR 144

Query: 289 PDSITFLGLL------------CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           PD  TF  +L            CG  H  +V+ G+      V    L   +K      +L
Sbjct: 145 PDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRAS---EL 201

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNV----EIGEIAMKNLVQLEAASA 392
                 +  A ++ +     D + W T++     + ++    E+ E  ++NL     A  
Sbjct: 202 GISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMI 261

Query: 393 GDYVLLATIYACTKDEEGVARTRKL----IKSNGIKTTPGWSW------IEIGNQVHKFV 442
             YV       C   +E +   RK+    I+ + I  T   S        ++G QVH ++
Sbjct: 262 SGYV------HCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYI 315

Query: 443 VDDKSHPD 450
           + ++ +P+
Sbjct: 316 LKNELNPN 323


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 195/583 (33%), Positives = 318/583 (54%), Gaps = 62/583 (10%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL  Y+    + L YA+ +F++IQ      WN++I+ + ++      I  ++ ++   L 
Sbjct: 54  LLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL- 112

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD FT    +K C R+  + + +++HG  ++ G+   V V  +L+  Y+  G I+ AR 
Sbjct: 113 -PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARK 171

Query: 146 VFDNMPERD-----------LVSWNSIISCYTQASFHLEALKLYERMRFEDV-------- 186
           VFD M ++D           LVSWN++I+ Y ++     AL+L+ +M   D+        
Sbjct: 172 VFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIA 231

Query: 187 --GLDG---------------------FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
              L+G                      TLV +LS+ + +  L  G ++H    + GF  
Sbjct: 232 GYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFEL 291

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
              +G +L++MYAKCG ++SA  VF  ++K+ V  W ++IVG G+HG  + A++ F +M 
Sbjct: 292 DGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMC 351

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  P++I F+G+L  C+H GLV++G +YF MM++ Y ++P ++HYGCLVD+  RAG L
Sbjct: 352 KTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHL 411

Query: 344 EKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
           E+A   I N     + V+W +LLG  + H  ++IGE A + ++++   + G Y+LL+ +Y
Sbjct: 412 EEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMY 471

Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
           A +   E V+  R+++   G +  PG S +E    +H+F+V D SHP    IY K+ E+ 
Sbjct: 472 AASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMK 531

Query: 463 HRAKFIGYTKDES--LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
            + K +G+  D +  L+ + G   +   E     HSE+LAIAFGL     G  +RI+KNL
Sbjct: 532 EKLKCVGHVPDTTQVLLCIEGEKEK---EAELENHSERLAIAFGLINVKPGIPIRIMKNL 588

Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R            S  YSR++IVRD  R+HHF++G CSC DYW
Sbjct: 589 RVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 631



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 18/228 (7%)

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV--IEAARSVFDNMPERDLVSWNSI 161
           A  + ++LH F +++       VS+ L+  Y+   +  +  ARS+FD +  R L+ WN+I
Sbjct: 28  APQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTI 87

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           I CY +  F  + + L+  +  E +  D FTL C++  CA +G +  G  +H +A ++GF
Sbjct: 88  IKCYVENQFSHDGIVLFHELVHEYLP-DNFTLPCVIKGCARLGVVQEGKQIHGLALKIGF 146

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV-----------LSWNSMIVGYGVHG 270
              V+V  +LV+MY+KCG +D A  VF  M  +DV           +SWN+MI GY   G
Sbjct: 147 GSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSG 206

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
             D A+  F QM +     D +T+  ++ G    G   + V+ F MM+
Sbjct: 207 DFDSALELFYQMPIW----DLVTWNLMIAGYELNGQFMDAVKMFFMML 250


>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g47530-like [Glycine max]
          Length = 515

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 202/516 (39%), Positives = 298/516 (57%), Gaps = 25/516 (4%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ--ELHG 113
           +N++IRA + S SP + +  Y  M    ++  D  + +F +K+C R+  L      ++H 
Sbjct: 5   YNTMIRACSMSDSPQKGLLLYRDMRRRGIA-ADPLSSSFVVKSCIRLXGLYLLGGVQVHC 63

Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
            + + G++   ++ T +M  Y+       A  VFD MP RD V+WN +ISC  + +   +
Sbjct: 64  NIFKYGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMISCCIRNNRTRD 123

Query: 174 ALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
           AL L++ ++        D  T + LL +CAH+ AL  G  +H    E G+  ++ + NAL
Sbjct: 124 ALSLFDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLSNAL 183

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           + MY++CG LD A  VF     ++V+SW++MI G  ++G G EAI  F++ML  G  PD 
Sbjct: 184 ISMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEMLRIGIRPDD 243

Query: 292 ITFLGLLCGCSHQGLVEEGV-EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
            T  G+L  CS+ G+V+EG+  +F  M   + + P + HYGC+VDL G AG L+KA ++I
Sbjct: 244 QTLTGVLSACSYSGMVDEGMMSFFDRMSREFGVTPNVHHYGCMVDLLGHAGLLDKAXQLI 303

Query: 351 -NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409
            +     D   WRTLLG+C+IH +V +GE  + +L++L+A  AGD+VLL  IY+     E
Sbjct: 304 MSMVEKPDSTTWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDHVLLLNIYSSAGHWE 363

Query: 410 GVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIG 469
            VA  RKL+K+  I+TTPG S IE+   VH+FVVDD SH     IY  L+EI H+ +  G
Sbjct: 364 KVAEVRKLMKNKSIQTTPGCSTIELKGVVHEFVVDDVSHTRNHEIYETLDEINHQLRIAG 423

Query: 470 YTKDESLVAVSGSSSEDFLEKSS--AYHSEKLAIAFGLATTPDGTSLRIVKNLR------ 521
           Y  + S    S     D  EK    ++HSEKLAIAFG+  TP GT+LR+  NLR      
Sbjct: 424 YVVELS----SELHKMDDKEKGYVLSHHSEKLAIAFGVLATPPGTTLRVANNLRICVDCF 479

Query: 522 ------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                 S  Y+ D+I+RD  R+HHFR G CSC +YW
Sbjct: 480 NFLKHFSGVYNGDVILRDHNRFHHFRGGCCSCSNYW 515


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 187/528 (35%), Positives = 302/528 (57%), Gaps = 17/528 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L  A+ + +++      +W ++I  ++Q+   ++A+  +  ML A    P+ +T    L
Sbjct: 92  ALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCI-PNEYTLATVL 150

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            +C   +++ + +++H  ++++ +E  + V ++L+  YA +  I+ AR VFD +PERD+V
Sbjct: 151 TSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVV 210

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           S  +IIS Y Q     EAL L+ ++  E +  +  T   L+++ + + +L+ G  +H + 
Sbjct: 211 SCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALI 270

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                   V + N+L+DMY+KCG L  +  VF  M +R V+SWN+M++GYG HG G E I
Sbjct: 271 LRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVI 330

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           S FK  L     PDS+T L +L GCSH GLV+EG++ F  +V   +      HYGC++DL
Sbjct: 331 SLFKD-LHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDL 389

Query: 337 YGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GR+G+LEKAL +I N    S P +W +LLG+C++H NV +GE+  + L+++E  +AG+Y
Sbjct: 390 LGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNY 449

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V+L+ IYA     + V + RKL+    +   PG SWI +   +H F   ++ HP    I 
Sbjct: 450 VILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDIN 509

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
            K++EI    K  G+  D  L  V     ++  E+    HSEKLAI FGL  TP G ++R
Sbjct: 510 AKIKEIFVDIKAAGFVPD--LSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIR 567

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++KNLR            S  Y R++ +RD+ R+H    G C+CGDYW
Sbjct: 568 VMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 144/270 (53%), Gaps = 1/270 (0%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           + AC   +AL + +++H  +I + Y   V + T L+  Y   G ++ AR+V D MPER +
Sbjct: 49  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 108

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW ++IS Y+Q   H+EAL L+ +M       + +TL  +L+SC+   ++  G  +H +
Sbjct: 109 VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 168

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             +  F   ++VG++L+DMYAK  N+  A  VF  + +RDV+S  ++I GY   G  +EA
Sbjct: 169 LVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEA 228

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F+Q+   G   + +TF  L+   S    ++ G +  H ++ R  L   +     L+D
Sbjct: 229 LDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG-KQVHALILRKELPFFVALQNSLID 287

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y + GKL  +  V +       V W  +L
Sbjct: 288 MYSKCGKLLYSRRVFDNMLERSVVSWNAML 317


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 196/568 (34%), Positives = 308/568 (54%), Gaps = 29/568 (5%)

Query: 5   KHARYVGLNKARQAHEIH---GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           +H ++V  + +  + E+    G  L+  YA     S   A  +F +++      W+++I 
Sbjct: 128 QHGKHVRESISETSFELDLFVGTALITMYA--RCRSPENAAQVFGRMKQKNLITWSAIIT 185

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
           AFA      +A+ Y+  M    +  P+  TF   L        L +   +H  +   G +
Sbjct: 186 AFADHGHCGEALRYFRMMQQEGI-LPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLD 244

Query: 122 RCVVVSTNLMR--GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
               +S  L+   G    G ++ A  +   M E+ + +WN +I+ YT      EAL+ Y+
Sbjct: 245 DTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQ 304

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           R++ E + +D  T + +L++C    +L  G  +H  A E G    V V NAL +MY+KCG
Sbjct: 305 RLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCG 364

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
           ++++A  +F  M  R  +SWN M+  Y  HG  +E +   ++M   G   + ITF+ +L 
Sbjct: 365 SMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLS 424

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP- 358
            CSH GL+ EG +YFH +     ++   +HYGCLVDL GRAGKL++A + I +  PS+P 
Sbjct: 425 SCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYI-SKMPSEPE 483

Query: 359 -VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
            V W +LLG+C++H++++ G++A + L++L+  ++   V+L+ IY+   D +  A+ R+ 
Sbjct: 484 IVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRA 543

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV 477
           + S  +K  PG S I++ N+VH+F V D SHP A  IY K+EE+    +  GY  D  +V
Sbjct: 544 MASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMV 603

Query: 478 --AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
              V     E  L    AYHSEKLAIAFGL +TP+ +SL I KNLR            S 
Sbjct: 604 LHDVDEEQKESLL----AYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISK 659

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              R+++VRD  R+HHFRDG CSC DYW
Sbjct: 660 ITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 173/345 (50%), Gaps = 14/345 (4%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           + +  TF   L +     AL K + +H  V  S +   V V+T L+  Y   G +  AR 
Sbjct: 7   KANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARK 66

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD MP R + +WNS+IS Y+ +    EA  +++RM+ E    D  T + +L +C +   
Sbjct: 67  VFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPEN 126

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +     E  F   ++VG AL+ MYA+C + ++A  VF RM+++++++W+++I  
Sbjct: 127 LQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITA 186

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           +  HG   EA+ +F+ M   G  P+ +TF+ LL G +    +EE +   H++++ + L  
Sbjct: 187 FADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEE-LSRIHLLITEHGLDD 245

Query: 326 GIKHYGCLVDLYGR--AGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEIAMK 382
                  LV++YGR   G+L+ A  ++          W  L+    +H R+ E  E   +
Sbjct: 246 TTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQR 305

Query: 383 NLVQLEAASAGDYVLLATIYACTKDE---EGVARTRKLIKSNGIK 424
             +QLEA        ++ + ACT      EG     K+I SN ++
Sbjct: 306 --LQLEAIPVDKVTFISVLNACTSSTSLAEG-----KMIHSNAVE 343



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 1/191 (0%)

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M  E V  +  T + +L+S     AL  G F+H    E      V+V  ALV+ Y KCG+
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           L  A  VF  M  R V +WNSMI  Y +  R  EA   F++M   G   D +TFL +L  
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           C +   ++ G ++    +S  + +  +     L+ +Y R    E A +V       + + 
Sbjct: 121 CVNPENLQHG-KHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLIT 179

Query: 361 WRTLLGSCKIH 371
           W  ++ +   H
Sbjct: 180 WSAIITAFADH 190


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 214/563 (38%), Positives = 300/563 (53%), Gaps = 37/563 (6%)

Query: 20   EIHGE---WLLNSYAISVSS----------SLSYAQLLFNQIQNPQTQAWNSLIRAFAQ- 65
            +IHGE   W L+   +SVS+          S++  Q +F Q+      +WNS I A A+ 
Sbjct: 578  QIHGEGFKWGLD-LDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKY 636

Query: 66   SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV 125
              S LQA+ Y+  M+ A   RP+  TF   L A      L    ++H  +++        
Sbjct: 637  EASVLQALKYFLEMMQAGW-RPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNA 695

Query: 126  VSTNLMRGYAANGVIEAARSVFDNMPER-DLVSWNSIISCYTQASFHLEALKLYERMRFE 184
            +   L+  Y     +E    +F  M ER D VSWNS+IS Y  +    +A+ L   M   
Sbjct: 696  IENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQR 755

Query: 185  DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
               LDGFT   +LS+CA V  L  G+ +H  A        V VG+ALVDMYAKCG +D A
Sbjct: 756  GQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYA 815

Query: 245  FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
               F  M  R++ SWNSMI GY  HG G +A+  F +M   G  PD +TF+G+L  CSH 
Sbjct: 816  SRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHV 875

Query: 305  GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWR 362
            GLV+EG ++F  M   Y L P I+H+ C+VDL GRAG ++K  + I T  P DP  ++WR
Sbjct: 876  GLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKT-MPMDPNILIWR 934

Query: 363  TLLGSC--KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
            T+LG+C     RN E+G+ A K L++LE  +A +YVLL+ ++A   + E V   R  ++ 
Sbjct: 935  TVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRK 994

Query: 421  NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
              +K   G SW+ + + VH FV  D++HP+ + IY KL+E+M++ +  GY  +       
Sbjct: 995  AAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYD 1054

Query: 481  GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
                      S  YHSEKLAIAF L T      +RI+KNLR            S    R 
Sbjct: 1055 LELENKEELLS--YHSEKLAIAFVL-TRKSELPIRIMKNLRVCGDCHTAFKYISKIVGRQ 1111

Query: 529  LIVRDRVRYHHFRDGLCSCGDYW 551
            +I+RD  R+HHF  G+CSCGDYW
Sbjct: 1112 IILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 171/343 (49%), Gaps = 17/343 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L  A+ LF+++      +W+ LI  + Q+  P +A   +  ++ + L  P+ F     L
Sbjct: 190 NLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGL-LPNHFAVGSAL 248

Query: 97  KACERV--KALNKCQELHGFVIRSGYERCVVVSTNLMRGYA-ANGVIEAARSVFDNMPER 153
           +AC++     +    ++H F+ +      +++S  LM  Y+  +G I+ A  VFD +  R
Sbjct: 249 RACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFR 308

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD----GFTLVCLLS---SCAHVGAL 206
           + V+WNSIIS Y +    + A KL+  M+ E V L+     +TL  L++   S A  G +
Sbjct: 309 NSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLV 368

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            +   L RI  + GF+  +YVG+ALV+ +A+ G +D A  +F +M  R+ ++ N ++VG 
Sbjct: 369 LLEQMLTRIE-KSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGL 427

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV---EYFHMMVSRYNL 323
               +G+EA   FK+M       +S + + LL   +    ++EG    +  H  + R  L
Sbjct: 428 ARQHQGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGL 486

Query: 324 KPGIKHYG-CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                  G  LV++YG+   ++ A  V       D V W +++
Sbjct: 487 VDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMI 529



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 162/339 (47%), Gaps = 24/339 (7%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM----------LMASLSRPDTF 90
           A+++F Q+ +      N L+   A+     +A   +  M          L+  LS   TF
Sbjct: 405 AKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLS---TF 461

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           T    LK  +R     K QE+H ++ RSG  +  + +   L+  Y     I+ A SVF  
Sbjct: 462 TEFSNLKEGKR-----KGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQL 516

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           MP +D VSWNS+IS         EA+  +  M+   +    F+++  LSSC+ +G L +G
Sbjct: 517 MPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLG 576

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H    + G    V V NAL+ +YA+  +++    VF +M + D +SWNS I     +
Sbjct: 577 RQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKY 636

Query: 270 GRGD-EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
                +A+ +F +M+ AG+ P+ +TF+ +L   S   ++  G +  H ++ +Y++     
Sbjct: 637 EASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQ-IHALILKYSVADDNA 695

Query: 329 HYGCLVDLYGRAGKLEKALEVI--NTSSPSDPVLWRTLL 365
               L+  YG+  ++E   E+I    S   D V W +++
Sbjct: 696 IENALLAFYGKCEQMEDC-EIIFSRMSERRDEVSWNSMI 733



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 153/327 (46%), Gaps = 31/327 (9%)

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           +L     LH  + ++G+   V     L+  Y   G + +AR +FD MP+++LVSW+ +IS
Sbjct: 155 SLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLIS 214

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA--LNMGIFLHRIACEMGF 221
            YTQ     EA  L++ +    +  + F +   L +C   G+  + +G+ +H   C++  
Sbjct: 215 GYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPC 274

Query: 222 VESVYVGNALVDMYAKC-GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           V  + + N L+ MY+ C G++D A  VF  ++ R+ ++WNS+I  Y   G    A   F 
Sbjct: 275 VSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFS 334

Query: 281 QMLMAG----FHPDSITFLGLL-CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
            M M G      P+  T   L+   CS   L + G+     M++R      I+  G L D
Sbjct: 335 VMQMEGVELNLRPNEYTLCSLVTAACS---LADCGLVLLEQMLTR------IEKSGFLRD 385

Query: 336 LY---------GRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVEIGEI--AMKN 383
           LY          R G ++ A  +       + V    L+ G  + H+  E  ++   MK+
Sbjct: 386 LYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKD 445

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEG 410
           LV++ + S    VLL+T    +  +EG
Sbjct: 446 LVEINSESL--VVLLSTFTEFSNLKEG 470



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 10/215 (4%)

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           LH    + GF + V+  N L+++Y + GNL SA  +F  M +++++SW+ +I GY  +  
Sbjct: 162 LHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRM 221

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL--VEEGVEYFHMMVSRYNLKPGIKH 329
            DEA S FK ++ +G  P+       L  C   G   ++ G++  H  + +      +  
Sbjct: 222 PDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQ-IHAFICKLPCVSDMIL 280

Query: 330 YGCLVDLYGR-AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
              L+ +Y   +G ++ A  V +     + V W +++ S    R   +    + +++Q+E
Sbjct: 281 SNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSII-SVYCRRGDAVSAFKLFSVMQME 339

Query: 389 AAS----AGDYVLLATIY-ACTKDEEGVARTRKLI 418
                    +Y L + +  AC+  + G+    +++
Sbjct: 340 GVELNLRPNEYTLCSLVTAACSLADCGLVLLEQML 374


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 193/532 (36%), Positives = 292/532 (54%), Gaps = 32/532 (6%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR-------PDTFTFT 93
           A+ +F+++       WN+++    Q        F +N   +   SR       PD F   
Sbjct: 137 ARKMFDEMPERNVATWNAMVAGLIQ--------FEFNEEGLGLFSRMNELGFLPDEFALG 188

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
             L+ C  ++AL   +++HG+V + G+E  +VV ++L   Y   G +     +   MP +
Sbjct: 189 SVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQ 248

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           ++V+WN++I+   Q  +  E L  Y  M+      D  T V ++SSC+ +  L  G  +H
Sbjct: 249 NVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIH 308

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
               + G    V V ++L+ MY++CG L+ +  VF      DV+ W+SMI  YG HGRG 
Sbjct: 309 AEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGV 368

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           EAI  F QM       + +TFL LL  CSH GL E+G+++F +MV +Y +KP ++HY C+
Sbjct: 369 EAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCM 428

Query: 334 VDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           VDL GR G +E+A E +  S P  +D + W+TLL +CKIH+  E+     + + +L+   
Sbjct: 429 VDLLGRYGSVEEA-EALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRD 487

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
              YVLL+ I+A  K  + V+  RK ++   +K  PG SW+E+ NQ+H+F + DKSHP +
Sbjct: 488 PVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKS 547

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
             I   L E+    K  GY  D   V +     ED  E S  +HSEKLAIAF L  TP G
Sbjct: 548 VEIASYLRELTSEMKKRGYVPDIDSV-LHDMDVED-KEYSLVHHSEKLAIAFALLYTPVG 605

Query: 512 TSLRIVKNLR-------SIAY-----SRDLIVRDRVRYHHFRDGLCSCGDYW 551
           T +R++KNLR       +I Y     +R++IVRD  R+HHF++G CSCGDYW
Sbjct: 606 TPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 168/350 (48%), Gaps = 11/350 (3%)

Query: 79  MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
           +++ S    D F     L    +   L+    L G + R     C +    L+ GY  +G
Sbjct: 77  LIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNI----LINGYFRSG 132

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
               AR +FD MPER++ +WN++++   Q  F+ E L L+ RM       D F L  +L 
Sbjct: 133 DWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLR 192

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
            CA + AL  G  +H    + GF  ++ V ++L  MY KCG+L     +   M  ++V++
Sbjct: 193 GCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVA 252

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WN++I G   +G  +E +  +  M MAGF PD ITF+ ++  CS    + +G +  H  V
Sbjct: 253 WNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQG-QQIHAEV 311

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIG 377
            +      +     L+ +Y R G LE +L+V       D V W +++ +   H R VE  
Sbjct: 312 IKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVE-- 369

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTK---DEEGVARTRKLIKSNGIK 424
            I + N ++ E   A D   L+ +YAC+     E+G+     +++  G+K
Sbjct: 370 AIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVK 419



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 3/241 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL   + L   + +    AWN+LI   AQ+  P + +  YN M MA   RPD  TF   +
Sbjct: 234 SLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGF-RPDKITFVSVI 292

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            +C  +  L + Q++H  VI++G    V V ++L+  Y+  G +E +  VF      D+V
Sbjct: 293 SSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVV 352

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRI 215
            W+S+I+ Y      +EA+ L+ +M  E +  +  T + LL +C+H G    GI F   +
Sbjct: 353 CWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLM 412

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDE 274
             + G    +     +VD+  + G+++ A  +   M  K DV++W +++    +H + + 
Sbjct: 413 VEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEM 472

Query: 275 A 275
           A
Sbjct: 473 A 473


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 179/526 (34%), Positives = 287/526 (54%), Gaps = 19/526 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+++      ++N +I  +A       A   +  +   +  R   F F   L    
Sbjct: 304 ARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQ-FPFATMLSIAS 362

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
                   +++H   I +  +  ++V  +L+  YA  G  E A  +F N+  R  V W +
Sbjct: 363 NTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTA 422

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y Q  F+ E L+L+ +MR   V  D  T   LL + A + +L++G  LH    + G
Sbjct: 423 MISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSG 482

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F+ +V+ G+AL+D+YAKCG++  A   F  M  R+++SWN+MI  Y  +G  +  +  FK
Sbjct: 483 FMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFK 542

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M+++G  PDS++FLG+L  CSH GLVEEG+ +F+ M   Y L P  +HY  +VD+  R+
Sbjct: 543 EMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRS 602

Query: 341 GKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA-ASAGDYVL 397
           G+  +A E +    P DP  ++W ++L +C+IH+N E+   A   L  +E    A  YV 
Sbjct: 603 GRFNEA-EKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVN 661

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           ++ IYA     E V++  K ++  G+K  P +SW+EI ++ H F  +D+ HP  + I +K
Sbjct: 662 MSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKK 721

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           ++ +    + +GY  D S      +  E F  +S  YHSE+LAIAF L +TP+G+ + ++
Sbjct: 722 IDMLTKTMEELGYKPDTSCAL--HNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVM 779

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S    R++ VRD  R+HHFRDG CSCGD+W
Sbjct: 780 KNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 177/394 (44%), Gaps = 8/394 (2%)

Query: 21  IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           I G  L++SY    S+ L  A  LF ++    + ++N++I  +++     +A+  +  M 
Sbjct: 185 IVGNTLVDSYC--KSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQ 242

Query: 81  MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
            + L +P  FTF   L A   +  +   Q++H FVI++ +   V VS  L+  Y+ +  +
Sbjct: 243 NSGL-KPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSV 301

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
             AR +FD MPE+D VS+N IIS Y     H  A  L+  ++F       F    +LS  
Sbjct: 302 IDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIA 361

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
           ++     MG  +H           + VGN+LVDMYAKCG  + A  +F+ +  R  + W 
Sbjct: 362 SNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWT 421

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           +MI  Y   G  +E +  F +M  A    D  TF  LL   +    +  G +  H  + +
Sbjct: 422 AMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQ-LHSFIIK 480

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIA 380
                 +     L+D+Y + G ++ A++        + V W  ++ +   +   E    +
Sbjct: 481 SGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKS 540

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKD---EEGV 411
            K +V L          L  + AC+     EEG+
Sbjct: 541 FKEMV-LSGLQPDSVSFLGVLSACSHSGLVEEGL 573



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 167/363 (46%), Gaps = 11/363 (3%)

Query: 12  LNKARQAHE--IHGEWLLNSYAIS---VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS 66
           L++ARQ  E   H   +  +  IS    S +L  A+ LF+ +       W  LI  ++Q 
Sbjct: 68  LSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQ- 126

Query: 67  LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV 126
           L+  +  F     +    + PD  TF   L  C   +  N+  ++   +I+ GY+  ++V
Sbjct: 127 LNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIV 186

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
              L+  Y  +  ++ A  +F  MPE D VS+N++I+ Y++     +A+ L+  M+   +
Sbjct: 187 GNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGL 246

Query: 187 GLDGFTLVCLLSSCAHVG--ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
               FT   +L  CA++G   + +G  +H    +  FV +V+V NAL+D Y+K  ++  A
Sbjct: 247 KPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDA 304

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             +F  M ++D +S+N +I GY   G+   A   F+++    F      F  +L   S+ 
Sbjct: 305 RKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNT 364

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364
              E G +  H           I     LVD+Y + GK E+A  +    +    V W  +
Sbjct: 365 LDWEMGRQ-IHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAM 423

Query: 365 LGS 367
           + +
Sbjct: 424 ISA 426



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 121/292 (41%), Gaps = 32/292 (10%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP------------- 151
           LN    +   ++++G++     S   +  +  NG +  AR +F+ MP             
Sbjct: 33  LNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG 92

Query: 152 ------------------ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
                             ER  V+W  +I  Y+Q +   EA +L+ +M+      D  T 
Sbjct: 93  YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTF 152

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
           V LLS C      N    +     ++G+   + VGN LVD Y K   LD A  +F  M +
Sbjct: 153 VTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPE 212

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
            D +S+N+MI GY   G  ++A++ F +M  +G  P   TF  +LC       +  G + 
Sbjct: 213 IDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLG-QQ 271

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            H  V + N    +     L+D Y +   +  A ++ +     D V +  ++
Sbjct: 272 IHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVII 323


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 215/597 (36%), Positives = 318/597 (53%), Gaps = 65/597 (10%)

Query: 13  NKARQAHEIHGEWL---LNS---------YAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           + AR+A E+H   +   L+S          A + S  L ++  L  + ++P T  + S I
Sbjct: 35  STARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAI 94

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR--- 117
            A +     L  +   + ML   L  P   T + +L AC   + L+  + LH +  +   
Sbjct: 95  HAHSSRGLHLPGLALLSDMLSEGL-LPTAHTLSASLPAC---RGLSLGRALHAYAFKLAL 150

Query: 118 SG----------------------------YERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           SG                             +  VV  T ++  YA  G ++ AR +FD 
Sbjct: 151 SGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDG 210

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           +P +D + WN++I  YTQ     EAL+L+ RM       D  T+V +LS+ A +G +  G
Sbjct: 211 LPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESG 270

Query: 210 IFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
            +LH        V+ +V V  ALVDMY KCG+L+ A  VF  +  +D++ WN+MI GY +
Sbjct: 271 KWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAM 330

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           HG   +A+  F Q+   G  P  ITF+GLL  CSH GLVEEG  +F  M   Y + P I+
Sbjct: 331 HGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIE 390

Query: 329 HYGCLVDLYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           HYGC+VDL GRAG +E+A  ++   T +P D V+W +LL +C++H+N+ +G+     LV 
Sbjct: 391 HYGCMVDLLGRAGLIEEAFHLVQSLTITP-DAVMWVSLLAACRLHKNMALGQRIADFLVA 449

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
              A++G Y+LL+ IYA     E VAR R ++K++GI+  PG S IEI  +V++FV  D 
Sbjct: 450 NGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDM 509

Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLA 506
           SHP  D IY  L+++    K  G+     LV       E   EK+ A HSEKLA+AFGL 
Sbjct: 510 SHPCTDEIYAMLDKMNALVKEHGHVPQTELVL--HDLDEATKEKALAVHSEKLAVAFGLI 567

Query: 507 TTPDGTSLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++  G++++IVKNLR+ +             SR ++ RDR R+HHF DG C+CGDYW
Sbjct: 568 SSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 152/352 (43%), Gaps = 47/352 (13%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L AC   +   +  ELH  V+R G +    V+  L R YAA+G ++ + ++     +   
Sbjct: 31  LAACSTAR---RASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTT 87

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           + + S I  ++    HL  L L   M  E +     TL   L +C     L++G  LH  
Sbjct: 88  IFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACR---GLSLGRALHAY 144

Query: 216 ACEMGFVESVYVGNALVDM-------------------------------YAKCGNLDSA 244
           A ++      YV  AL+ M                               YA  G LD A
Sbjct: 145 AFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDA 204

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             +F  + ++D + WN+MI GY  HG+ +EA+  F++ML +   PD +T + +L   +  
Sbjct: 205 RRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQL 264

Query: 305 GLVEEGVEYFHMMVSRYN-LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
           G VE G ++ H  V     ++  ++    LVD+Y + G LE A+ V +     D V+W  
Sbjct: 265 GTVESG-KWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNA 323

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLATIYACTKD---EEG 410
           ++    +H +      A++  VQL  +     D   +  + AC+     EEG
Sbjct: 324 MINGYAMHGD---SRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEG 372


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 184/541 (34%), Positives = 294/541 (54%), Gaps = 21/541 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ Y  S   S+  A+ LF+++      ++N +I  +A       A   +  +   +  
Sbjct: 251 LLDFY--SKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFD 308

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           R   F F   L            +++H   I +  +  ++V  +L+  YA  G  E A  
Sbjct: 309 RKQ-FPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEM 367

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F N+  R  V W ++IS Y Q  F+ E L+L+ +MR   V  D  T   LL + A + +
Sbjct: 368 IFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIAS 427

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L++G  LH    + GF+ +V+ G+AL+D+YAKCG++  A   F  M  R+++SWN+MI  
Sbjct: 428 LSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISA 487

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y  +G  +  +  FK+M+++G  PDS++FLG+L  CSH GLVEEG+ +F+ M   Y L P
Sbjct: 488 YAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDP 547

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKN 383
             +HY  +VD+  R+G+  +A E +    P DP  ++W ++L +C+IH+N E+   A   
Sbjct: 548 RREHYASVVDMLCRSGRFNEA-EKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQ 606

Query: 384 LVQLEA-ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
           L  +E    A  YV ++ IYA     E V++  K ++  G+K  P +SW+EI ++ H F 
Sbjct: 607 LFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFS 666

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
            +D+ HP  + I +K++ +    + +GY  D S      +  E F  +S  YHSE+LAIA
Sbjct: 667 ANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCAL--HNEDEKFKVESLKYHSERLAIA 724

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           F L +TP+G+ + ++KNLR            S    R++ VRD  R+HHFRDG CSCGD+
Sbjct: 725 FALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDF 784

Query: 551 W 551
           W
Sbjct: 785 W 785



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 147/335 (43%), Gaps = 5/335 (1%)

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           L   +   D+FTF   L A   +  +   Q++H FVI++ +   V VS  L+  Y+ +  
Sbjct: 201 LFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDS 260

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           +  AR +FD MPE+D VS+N IIS Y     H  A  L+  ++F       F    +LS 
Sbjct: 261 VIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSI 320

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
            ++     MG  +H           + VGN+LVDMYAKCG  + A  +F+ +  R  + W
Sbjct: 321 ASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPW 380

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
            +MI  Y   G  +E +  F +M  A    D  TF  LL   +    +  G +  H  + 
Sbjct: 381 TAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQ-LHSFII 439

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEI 379
           +      +     L+D+Y + G ++ A++        + V W  ++ +   +   E    
Sbjct: 440 KSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLK 499

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKD---EEGV 411
           + K +V L          L  + AC+     EEG+
Sbjct: 500 SFKEMV-LSGLQPDSVSFLGVLSACSHSGLVEEGL 533



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Query: 125 VVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
            VSTN+M  GY  +G +  AR +FD M ER  V+W  +I  Y+Q +   EA +L+ +M+ 
Sbjct: 78  TVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQR 137

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
                D  T V LLS C      N    +     ++G+   + VGN LVD Y K   LD 
Sbjct: 138 CGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDL 197

Query: 244 AFCVFSRMRKRDVLSWNSMI 263
           A  +F  M + D  ++ +++
Sbjct: 198 ACQLFKEMPEIDSFTFAAVL 217



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N ++  Y K GNL  A  +F  M +R  ++W  +I GY    +  EA   F QM   G  
Sbjct: 82  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 141

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           PD +TF+ LL GC+   +  + +      + +      +     LVD Y ++ +L+ A +
Sbjct: 142 PDYVTFVTLLSGCNGHEMGNQ-ITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQ 200

Query: 349 VINTSSPSDPVLWRTLL 365
           +       D   +  +L
Sbjct: 201 LFKEMPEIDSFTFAAVL 217


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 189/566 (33%), Positives = 310/566 (54%), Gaps = 23/566 (4%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           +G + HA  V    +R A    G  +L+ Y  S    +   ++LF+++      ++N +I
Sbjct: 268 LGQQLHALSVTTGFSRDASV--GNQILDFY--SKHDRVLETRMLFDEMPELDFVSYNVVI 323

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
            +++Q+     ++ ++  M      R + F F   L     + +L   ++LH   + +  
Sbjct: 324 SSYSQADQYEASLHFFREMQCMGFDRRN-FPFATMLSIAANLSSLQMGRQLHCQALLATA 382

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           +  + V  +L+  YA   + E A  +F ++P+R  VSW ++IS Y Q   H   LKL+ +
Sbjct: 383 DSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTK 442

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           MR  ++  D  T   +L + A   +L +G  LH      G +E+V+ G+ LVDMYAKCG+
Sbjct: 443 MRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGS 502

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           +  A  VF  M  R+ +SWN++I  +  +G G+ AI  F +M+ +G  PDS++ LG+L  
Sbjct: 503 IKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTA 562

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP-- 358
           CSH G VE+G EYF  M   Y + P  KHY C++DL GR G+  +A ++++   P +P  
Sbjct: 563 CSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMD-EMPFEPDE 621

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA-ASAGDYVLLATIYACTKDEEGVARTRKL 417
           ++W ++L +C+IH+N  + E A + L  +E    A  YV ++ IYA   + E V   +K 
Sbjct: 622 IMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKA 681

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV 477
           ++  GIK  P +SW+E+ +++H F  +D++HP+ D I RK+ E+    +  GY  D S  
Sbjct: 682 MRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTS-- 739

Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
           +V     E    +S  YHSE+LA+AF L +TP+G  + ++KNLR            S   
Sbjct: 740 SVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIV 799

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R++ VRD  R+HHF +G+CSCGDYW
Sbjct: 800 KREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 158/336 (47%), Gaps = 8/336 (2%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS-LSRPDTFTFT 93
           +  +S A+ LF+ + +     W  L+  +A++    +A   +  M  +S  + PD  TFT
Sbjct: 92  TGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFT 151

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYER--CVVVSTNLMRGYAANGVIEAARSVFDNMP 151
             L  C      N   ++H F ++ G++    + VS  L++ Y     ++ A  +F+ +P
Sbjct: 152 TLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIP 211

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           E+D V++N++I+ Y +   + E++ L+ +MR        FT   +L +   +    +G  
Sbjct: 212 EKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQ 271

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           LH ++   GF     VGN ++D Y+K   +     +F  M + D +S+N +I  Y    +
Sbjct: 272 LHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQ 331

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKPGIKHY 330
            + ++ FF++M   GF   +  F  +L   ++   ++ G + +   +++  +    I H 
Sbjct: 332 YEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATAD---SILHV 388

Query: 331 G-CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           G  LVD+Y +    E+A  +  +      V W  L+
Sbjct: 389 GNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALI 424



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 5/179 (2%)

Query: 125 VVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-R 182
            VSTN M  G+   G + +AR +FD MP+R +V+W  ++  Y + S   EA KL+ +M R
Sbjct: 79  TVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCR 138

Query: 183 FEDVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY--VGNALVDMYAKCG 239
                L D  T   LL  C      N    +H  A ++GF  + +  V N L+  Y +  
Sbjct: 139 SSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVR 198

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
            LD A  +F  + ++D +++N++I GY   G   E+I  F +M  +G  P   TF G+L
Sbjct: 199 RLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVL 257


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 199/554 (35%), Positives = 297/554 (53%), Gaps = 47/554 (8%)

Query: 42  QLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101
           +LL    +N +  A+N++I  +       +A+     M+ + +   D FT+   ++AC  
Sbjct: 240 ELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIEL-DEFTYPSVIRACAN 298

Query: 102 VKALNKCQELHGFVIR-------------SGYERC-----------------VVVSTNLM 131
            + L   +++H +V+R             + Y +C                 +V    L+
Sbjct: 299 ARLLQLGKQVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALL 358

Query: 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191
            GY ++G I  A+ +F  M E++++SW  +IS   +  F  E LKL+  M+ E      +
Sbjct: 359 SGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDY 418

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
                + SCA +GA   G   H    ++GF  S+  GNAL+ MYAKCG ++ A  VF  M
Sbjct: 419 AFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTM 478

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
              D +SWN++I   G HG G EA+  +++ML  G  PD ITFL +L  CSH GLV++G 
Sbjct: 479 PCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGR 538

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCK 369
           +YF+ M + Y + PG  HY  L+DL  R+GK  +A  +I  S P  P   +W  LL  C+
Sbjct: 539 KYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIE-SLPFKPTAEIWEALLSGCR 597

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           +H N+E+G IA   L  L     G Y+LL+ +YA T   E VAR RKL++  G+K     
Sbjct: 598 VHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVAC 657

Query: 430 SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
           SWIE+  QVH F+VDD SHP+A+ +Y+ L+++    + +GY  D S V +    S+   E
Sbjct: 658 SWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFV-LHDVESDGHKE 716

Query: 490 KSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRY 537
                HSEK+A+AFGL   P GT++RI KNLR            S    RD+I+RDR R+
Sbjct: 717 DMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRF 776

Query: 538 HHFRDGLCSCGDYW 551
           HHFR+G CSCG++W
Sbjct: 777 HHFRNGECSCGNFW 790



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 169/438 (38%), Gaps = 104/438 (23%)

Query: 35  SSSLSYAQLLFNQIQNPQ---------------------------------TQAWNSLIR 61
           SS L YA+ LF++I  P                                  T  +N++I 
Sbjct: 62  SSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMIT 121

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNK-CQELHGFVIRSGY 120
            F+ +     AI  +  M      +PD FT+   L     V    K C + H   ++SG 
Sbjct: 122 GFSHNNDGYSAINLFCKMKHEGF-KPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGA 180

Query: 121 ERCVVVSTNLMRGYA----ANGVIEAARSVFDNMPERD---------------------- 154
                VS  L+  Y+    +  ++ +AR VFD++PE+D                      
Sbjct: 181 GYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKE 240

Query: 155 ----------LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
                     LV++N++IS Y     + EAL++  RM    + LD FT   ++ +CA+  
Sbjct: 241 LLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANAR 300

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
            L +G  +H          S +  N+LV +Y KCG  + A  +F +M  +D++SWN+++ 
Sbjct: 301 LLQLGKQVHAYVLRREDF-SFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLS 359

Query: 265 GY-------------------------------GVHGRGDEAISFFKQMLMAGFHPDSIT 293
           GY                                 +G G+E +  F  M   GF P    
Sbjct: 360 GYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYA 419

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F G +  C+  G    G + FH  + +      +     L+ +Y + G +E+A +V  T 
Sbjct: 420 FSGAIKSCAVLGAYCNG-QQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTM 478

Query: 354 SPSDPVLWRTLLGSCKIH 371
              D V W  L+ +   H
Sbjct: 479 PCLDSVSWNALIAALGQH 496



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 113/241 (46%), Gaps = 9/241 (3%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  +  A+L+F +++     +W  +I   A++    + +  ++ M       P  + F+ 
Sbjct: 364 SGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGF-EPCDYAFSG 422

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            +K+C  + A    Q+ H  +++ G++  +     L+  YA  GV+E A+ VF  MP  D
Sbjct: 423 AIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLD 482

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            VSWN++I+   Q    +EA+ +YE M  + +  D  T + +L++C+H G ++ G    +
Sbjct: 483 SVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQG---RK 539

Query: 215 IACEMGFVESVYVG----NALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVH 269
               M  V  +  G      L+D+  + G    A  +   +  K     W +++ G  VH
Sbjct: 540 YFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVH 599

Query: 270 G 270
           G
Sbjct: 600 G 600



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 135/335 (40%), Gaps = 72/335 (21%)

Query: 101 RVKALNKCQELHGFVIRSGYE-------RCV------------------------VVSTN 129
           R  +L   + +HG +I  G++       R +                        +  T 
Sbjct: 26  RRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTT 85

Query: 130 LMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           ++ GY A+G I  ARSVF+  P   RD V +N++I+ ++  +    A+ L+ +M+ E   
Sbjct: 86  MVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFK 145

Query: 188 LDGFTLVCLLSSCAH-VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN----LD 242
            D FT   +L+  A  V      +  H  A + G      V NALV +Y++C +    L 
Sbjct: 146 PDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLH 205

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD----------------------------- 273
           SA  VF  + ++D  SW +M+ GY  +G  D                             
Sbjct: 206 SARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCG 265

Query: 274 ---EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
              EA+   ++M+ +G   D  T+  ++  C++  L++ G +    ++ R +        
Sbjct: 266 LYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDF--SFHFD 323

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             LV LY + GK  +A  +       D V W  LL
Sbjct: 324 NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALL 358



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 110/289 (38%), Gaps = 54/289 (18%)

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK----------- 253
           +L +   +H      GF    ++ N L+D+Y K   LD A  +F  + +           
Sbjct: 29  SLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVS 88

Query: 254 ----------------------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
                                 RD + +N+MI G+  +  G  AI+ F +M   GF PD 
Sbjct: 89  GYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDD 148

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK----LEKAL 347
            T+  +L G +     E+    FH    +            LV +Y R       L  A 
Sbjct: 149 FTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSAR 208

Query: 348 EVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL---VQLEAASAGDYVLLATIYAC 404
           +V +     D   W T++     +   ++G+  +K +   ++L A +A    +++    C
Sbjct: 209 KVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNA----MISGYVNC 264

Query: 405 TKDEEGVARTRKLIKS----------NGIKTTPGWSWIEIGNQVHKFVV 443
              +E +   R+++ S          + I+       +++G QVH +V+
Sbjct: 265 GLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVL 313


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 187/528 (35%), Positives = 302/528 (57%), Gaps = 17/528 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L  A+ + +++      +W ++I  ++Q+   ++A+  +  ML A    P+ +T    L
Sbjct: 60  ALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCI-PNEYTLATVL 118

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            +C   +++ + +++H  ++++ +E  + V ++L+  YA +  I+ AR VFD +PERD+V
Sbjct: 119 TSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVV 178

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           S  +IIS Y Q     EAL L+ ++  E +  +  T   L+++ + + +L+ G  +H + 
Sbjct: 179 SCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALI 238

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                   V + N+L+DMY+KCG L  +  VF  M +R V+SWN+M++GYG HG G E I
Sbjct: 239 LRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVI 298

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           S FK  L     PDS+T L +L GCSH GLV+EG++ F  +V   +      HYGC++DL
Sbjct: 299 SLFKD-LHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDL 357

Query: 337 YGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GR+G+LEKAL +I N    S P +W +LLG+C++H NV +GE+  + L+++E  +AG+Y
Sbjct: 358 LGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNY 417

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V+L+ IYA     + V + RKL+    +   PG SWI +   +H F   ++ HP    I 
Sbjct: 418 VILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDIN 477

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
            K++EI    K  G+  D  L  V     ++  E+    HSEKLAI FGL  TP G ++R
Sbjct: 478 AKIKEIFVDIKAAGFVPD--LSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIR 535

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++KNLR            S  Y R++ +RD+ R+H    G C+CGDYW
Sbjct: 536 VMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 144/270 (53%), Gaps = 1/270 (0%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           + AC   +AL + +++H  +I + Y   V + T L+  Y   G ++ AR+V D MPER +
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW ++IS Y+Q   H+EAL L+ +M       + +TL  +L+SC+   ++  G  +H +
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 136

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             +  F   ++VG++L+DMYAK  N+  A  VF  + +RDV+S  ++I GY   G  +EA
Sbjct: 137 LVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEA 196

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F+Q+   G   + +TF  L+   S    ++ G +  H ++ R  L   +     L+D
Sbjct: 197 LDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQ-VHALILRKELPFFVALQNSLID 255

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y + GKL  +  V +       V W  +L
Sbjct: 256 MYSKCGKLLYSRRVFDNMLERSVVSWNAML 285


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  347 bits (891), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 197/548 (35%), Positives = 303/548 (55%), Gaps = 52/548 (9%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
            +L+F+ +       WN++I  + ++    +AI  +  M+      P++ T +  L AC 
Sbjct: 342 GRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACV 401

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R ++    + +H  V++ G+E+   V   LM  Y+  G IE ARS+F +M  +D+VSWN+
Sbjct: 402 RCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNT 461

Query: 161 IISCYTQASFHLEALKLYERMR----------FED--------VGLDGFTLVCLLSSCAH 202
           +I+ Y     H +AL L   M+          F+D        +  +  TL+ +L  CA 
Sbjct: 462 MITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAA 521

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL  G  +H  A +    + V VG+ALVDMYAKCG L+ +  VF +M  R+V++WN +
Sbjct: 522 LAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVL 581

Query: 263 IVGYGVHGRGDEAISFFKQMLMAG-----FHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           I+ YG+HG+G+EA+  F++M+  G       P+ +T++ +    SH G+V+EG+  F+ M
Sbjct: 582 IMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTM 641

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT--SSPSDPVLWRTLLGSCKIHRNVE 375
            +++ ++P   HY CLVDL GR+G++E+A  +I T  S+      W +LLG+CKIH+N+E
Sbjct: 642 KAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLE 701

Query: 376 IGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIG 435
           IGEIA KNL          +VL   +      +  + R    +K  G++  PG SWIE G
Sbjct: 702 IGEIAAKNL----------FVLDPNVLDYGTKQSMLGRK---MKEKGVRKEPGCSWIEHG 748

Query: 436 NQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYH 495
           ++VHKF+  D SHP +  ++  LE +  R K  GY  D S V  +    E   E     H
Sbjct: 749 DEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEK--ETMLCGH 806

Query: 496 SEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDG 543
           SE+LAIAFGL  T  GT++R+ KNLR            S    R++I+RD  R+HHFR+G
Sbjct: 807 SERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNG 866

Query: 544 LCSCGDYW 551
            CSCGDYW
Sbjct: 867 TCSCGDYW 874



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 190/406 (46%), Gaps = 45/406 (11%)

Query: 11  GLNKARQAHEI---HGEW--LLNSYAISVSSSLSY---AQLLFNQIQNPQTQAWNSLIRA 62
           GL   +Q H     +G+W    N+  +++ + L     A+ LF+   +    +WN++I +
Sbjct: 202 GLLLGKQVHAFVLRNGDWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISS 261

Query: 63  FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV------I 116
            +Q+    +A+ Y  H+++ S  RP+  T    L AC  ++ L   +E+H FV      I
Sbjct: 262 LSQNDRFEEALLYL-HVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLI 320

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
            + +  C +V       Y      E  R VFD M  R +  WN++I+ Y +  F  EA++
Sbjct: 321 ENSFVGCALVDM-----YCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIE 375

Query: 177 LYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L+  M FE +GL  +  TL  +L +C    +      +H    + GF +  YV NAL+DM
Sbjct: 376 LFVEMVFE-LGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDM 434

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA--------- 285
           Y++ G ++ A  +F  M ++D++SWN+MI GY V GR D+A++    M            
Sbjct: 435 YSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTF 494

Query: 286 ---------GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
                       P+S+T + +L GC+    + +G E  H    +  L   +     LVD+
Sbjct: 495 DDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKE-IHAYAVKQMLSKDVAVGSALVDM 553

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           Y + G L  +  V    S  + + W  L+ +  +H     GE A+K
Sbjct: 554 YAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGK---GEEALK 596



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 165/330 (50%), Gaps = 10/330 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F++I N    +WNS+I A  +      A+  +  ML+ ++  P +FT      AC 
Sbjct: 139 ARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVG-PTSFTLVSVAHACS 197

Query: 101 R-VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
             +  L   +++H FV+R+G  R    +  L+  YA  G +  A+++FD   ++DLVSWN
Sbjct: 198 NLINGLLLGKQVHAFVLRNGDWR-TFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWN 256

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR-IACE 218
           +IIS  +Q     EAL     M    V  +G TL  +L +C+H+  L  G  +H  +   
Sbjct: 257 TIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMN 316

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
              +E+ +VG ALVDMY  C   +    VF  M +R +  WN+MI GY  +    EAI  
Sbjct: 317 NDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIEL 376

Query: 279 FKQMLMA-GFHPDSITFLGLLCGC--SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           F +M+   G  P+S+T   +L  C      L +EG+   H  V ++  +        L+D
Sbjct: 377 FVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGI---HSCVVKWGFEKDKYVQNALMD 433

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y R G++E A  +  + +  D V W T++
Sbjct: 434 MYSRMGRIEIARSIFGSMNRKDIVSWNTMI 463



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/365 (30%), Positives = 177/365 (48%), Gaps = 13/365 (3%)

Query: 56  WNSLIRAFAQSLSPL-QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           W S +R+  QS S   QAI  Y +M+ A +  PD F F   LKA   ++ LN  ++LH  
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVP-PDNFAFPAVLKATAGIQDLNLGKQLHAH 110

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           V + G      V  +L+  Y   G I+AAR VFD +  RD VSWNS+I+   +      A
Sbjct: 111 VFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELA 170

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAH-VGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           + L+  M  E+VG   FTLV +  +C++ +  L +G  +H      G   + +  NALV 
Sbjct: 171 VHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRT-FTNNALVT 229

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MYAK G +  A  +F     +D++SWN++I     + R +EA+ +   ML +G  P+ +T
Sbjct: 230 MYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVT 289

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-LVDLYGRAGKLEKALEVINT 352
              +L  CSH  ++  G E  H  V   N        GC LVD+Y    + EK   V + 
Sbjct: 290 LASVLPACSHLEMLGCGKE-IHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDG 348

Query: 353 SSPSDPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK----- 406
                  +W  ++ G  +   + E  E+ ++ + +L   S     L + + AC +     
Sbjct: 349 MFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFEL-GLSPNSVTLSSVLPACVRCESFL 407

Query: 407 DEEGV 411
           D+EG+
Sbjct: 408 DKEGI 412


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 185/524 (35%), Positives = 295/524 (56%), Gaps = 16/524 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF  + +     W +++  F Q+    QA+ ++  M    ++  D +TF   L AC 
Sbjct: 225 ARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIA-IDQYTFGSILTACG 283

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + AL + +++H ++IR+ Y+  V V + L+  Y+    I+ A + F  M  ++++SW +
Sbjct: 284 ALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTA 343

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I  Y Q     EA++++  M+ + +  D FTL  ++SSCA++ +L  G   H +A   G
Sbjct: 344 LIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 403

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            +  + V NALV +Y KCG+++ A  +F  M   D +SW +++ GY   GR  E I  F+
Sbjct: 404 LMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFE 463

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML     PD +TF+G+L  CS  G VE+G  YFH M   + + P   HY C++DLY R+
Sbjct: 464 KMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRS 523

Query: 341 GKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+L++A E I       D + W TLL +C++  ++EIG+ A +NL++++  +   YVLL 
Sbjct: 524 GRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLC 583

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
           +++A   +   VA+ R+ ++   +K  PG SWI+  N+VH F  DD+SHP +  IY KLE
Sbjct: 584 SMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLE 643

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
            +  +    GY  D S V    + ++     S  +HSEKLAIAFGL   P    +RIVKN
Sbjct: 644 WLNSKMLEEGYKPDVSSVLHDVADTDKVHMVS--HHSEKLAIAFGLMFVPHEMPIRIVKN 701

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    RD++VRD VR+H F +G+CSCGD+W
Sbjct: 702 LRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 207/434 (47%), Gaps = 53/434 (12%)

Query: 36  SSLSYAQLL------FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS-RPD 88
           S+L++A+LL      F  +    T ++N++I  F+   +  +A+  Y+ +L A  S RP 
Sbjct: 80  STLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPS 139

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI-------- 140
             T +  + A   +      ++ H  ++R G+     V + L+  YA  G+I        
Sbjct: 140 RITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFD 199

Query: 141 -----------------------EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177
                                  E AR +F+ M +RD ++W ++++ +TQ     +AL  
Sbjct: 200 EMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNF 259

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
           + RMRF+ + +D +T   +L++C  + AL  G  +H       + ++V+VG+ALVDMY+K
Sbjct: 260 FRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSK 319

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
           C ++  A   F RM  ++++SW ++IVGYG +G  +EA+  F +M   G  PD  T   +
Sbjct: 320 CRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSV 379

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY----GCLVDLYGRAGKLEKALEVINTS 353
           +  C++   +EEG + FH +     L  G+ HY      LV LYG+ G +E A  + +  
Sbjct: 380 ISSCANLASLEEGAQ-FHCLA----LVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEM 434

Query: 354 SPSDPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EE 409
              D V W  L+ G  +  R  E  ++  K L +           +  + AC++    E+
Sbjct: 435 LFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAK--DVKPDGVTFIGVLSACSRAGFVEK 492

Query: 410 GVARTRKLIKSNGI 423
           G +    + K +GI
Sbjct: 493 GCSYFHSMQKDHGI 506



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 117/269 (43%), Gaps = 34/269 (12%)

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM--RFEDVG 187
           L+   A   +++   S+F +M +RD VS+N++I+ ++    H  A++LY  +      V 
Sbjct: 78  LLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVR 137

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK---------- 237
               T+  ++ + + +G   +G   H     +GF  + +VG+ LV MYAK          
Sbjct: 138 PSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRV 197

Query: 238 ---------------------CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                                C  ++ A  +F  M  RD ++W +M+ G+  +G   +A+
Sbjct: 198 FDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQAL 257

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           +FF++M   G   D  TF  +L  C     +E+G +  H  + R +    +     LVD+
Sbjct: 258 NFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQ-IHAYIIRTHYDDNVFVGSALVDM 316

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           Y +   ++ A       S  + + W  L+
Sbjct: 317 YSKCRSIKPAETAFRRMSCKNIISWTALI 345



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A  LF+++      +W +L+  +AQ     + I  +  ML   + +PD  TF   L
Sbjct: 423 SIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDV-KPDGVTFIGVL 481

Query: 97  KACERVKALNK-------CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
            AC R   + K        Q+ HG V    +  C++   +L   Y+ +G ++ A      
Sbjct: 482 SACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMI---DL---YSRSGRLKEAEEFIKQ 535

Query: 150 MP-ERDLVSWNSIIS 163
           MP   D + W +++S
Sbjct: 536 MPMHPDAIGWGTLLS 550


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 188/527 (35%), Positives = 286/527 (54%), Gaps = 21/527 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQ LF+++ N    +WNSL+   +        +  +  M   S  +P+  T    + AC 
Sbjct: 193 AQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACA 252

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + AL++ + LHG V++ G      V  +L+  Y   G ++AA  +F+ MP R LVSWNS
Sbjct: 253 XMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNS 312

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  +    +  + + L+  M+   +  D  T+V LL +C   G       +H      G
Sbjct: 313 MVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCG 372

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F   + +  AL+++YAK G L+++  +F  ++ RD ++W +M+ GY VH  G EAI  F 
Sbjct: 373 FNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFD 432

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            M+  G   D +TF  LL  CSH GLVEEG +YF +M   Y ++P + HY C+VDL GR+
Sbjct: 433 LMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRS 492

Query: 341 GKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G+LE A E+I  S P +P   +W  LLG+C+++ NVE+G+   + L+ L+ +   +Y++L
Sbjct: 493 GRLEDAYELIK-SMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIML 551

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + IY+        ++ R L+K   +   PG S+IE GN++H+FVV D+ HP +D I+ KL
Sbjct: 552 SNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKL 611

Query: 459 EEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
           EE++ +    G       V   +      D + K    HSEKLAIAFGL  T  G  L I
Sbjct: 612 EELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINK----HSEKLAIAFGLLVTGSGVPLII 667

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            KNLR            S+   R +I+RD  R+HHF DGLCSC DYW
Sbjct: 668 TKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 195/559 (34%), Positives = 292/559 (52%), Gaps = 51/559 (9%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F ++       WN++I  +  S   ++A   +  M++  +   D FTFT  L AC 
Sbjct: 247 ARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPL-DEFTFTSVLSACA 305

Query: 101 RVKALNKCQELHGFVIRSGY----ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            V      + +HG +IR       E  + V+  L+  Y+  G I  AR +FDNM  +D+V
Sbjct: 306 NVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVV 365

Query: 157 SWNSIISCYTQAS-------------------------------FHLEALKLYERMRFED 185
           SWN+I+S Y ++S                               F  +ALKL+ +MR E+
Sbjct: 366 SWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSEN 425

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           V    +T    +++C  +GAL  G  LH    ++GF  S   GNAL+ MYA+CG +  A 
Sbjct: 426 VKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAH 485

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            +F  M   D +SWN+MI   G HG G EA+  F +M+  G +PD I+FL +L  C+H G
Sbjct: 486 LMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSG 545

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTL 364
           LV+EG  YF  M   + + PG  HY  L+DL GRAG++ +A ++I T      P +W  +
Sbjct: 546 LVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAI 605

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
           L  C+   ++E+G  A   L ++     G Y+LL+  Y+        AR RKL++  G+K
Sbjct: 606 LSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVK 665

Query: 425 TTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSS 484
             PG SWIE GN+VH F+V D  HP+A  +Y+ LE +  + + +GY  D  +V       
Sbjct: 666 KEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPH 725

Query: 485 EDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVR 532
           +   E     HSE+LA+ FGL   P G ++ ++KNLR            S A  R+++VR
Sbjct: 726 QK--EHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVGREIVVR 783

Query: 533 DRVRYHHFRDGLCSCGDYW 551
           D  R+HHF+DG CSCG+YW
Sbjct: 784 DVRRFHHFKDGECSCGNYW 802



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 172/356 (48%), Gaps = 47/356 (13%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQ--TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD 88
           A + +  L  A   F+ +   +  T   N++I A+A++     A+  +  +L +   RPD
Sbjct: 97  AYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPD 156

Query: 89  TFTFTFTLKACERVK--ALNKCQELHGFVIRSG--------------YERCV-------- 124
            ++FT  L A   +   ++  C +LH  V++SG              Y +C         
Sbjct: 157 DYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDA 216

Query: 125 ------------VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
                       +  T ++ GY   G + AARSVF+ +  +  V WN++IS Y  +   +
Sbjct: 217 RKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAV 276

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR--IACEMGFVE--SVYVG 228
           EA +L+ RM  E V LD FT   +LS+CA+VG    G  +H   I  +  FV   ++ V 
Sbjct: 277 EAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVN 336

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           NALV  Y+KCGN+  A  +F  M  +DV+SWN+++ GY      D+A+  F++M     +
Sbjct: 337 NALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMP----Y 392

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            + ++++ ++ G  H G  E+ ++ F+ M S  N+KP    Y   +   G  G L+
Sbjct: 393 KNELSWMVMVSGYVHGGFAEDALKLFNKMRSE-NVKPCDYTYAGAIAACGELGALK 447



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 109/233 (46%), Gaps = 3/233 (1%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           SS L  A  +F ++      +W  ++  +        A+  +N M   ++ +P  +T+  
Sbjct: 377 SSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENV-KPCDYTYAG 435

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            + AC  + AL   ++LHG +++ G+E        L+  YA  G ++ A  +F  MP  D
Sbjct: 436 AIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNID 495

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLH 213
            VSWN++IS   Q     EAL+L++RM  E +  D  + + +L++C H G ++ G  +  
Sbjct: 496 SVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFE 555

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSMIVG 265
            +  + G +        L+D+  + G +  A  +   M      S W +++ G
Sbjct: 556 SMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSG 608



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 127/288 (44%), Gaps = 44/288 (15%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYTQASFHLEALKLY 178
           + C V +T+L+  YAA   + AA S FD +P   RD V  N++IS Y +AS    A+ ++
Sbjct: 85  DPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVF 144

Query: 179 ERMRFE-DVGLDGFTLVCLLSSCAHVGALNMG--IFLHRIACEMGFVESVYVGNALVDMY 235
             +     +  D ++   LLS+  H+  +++     LH    + G   ++ V NALV +Y
Sbjct: 145 RSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALY 204

Query: 236 AKCGNLDS---AFCVFSRMRKRDVLSWNSMIVGY--------------GVHGRGD----- 273
            KC + ++   A  V   M  +D L+W +M+VGY               V G+ D     
Sbjct: 205 MKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNA 264

Query: 274 ------------EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
                       EA   F++M++     D  TF  +L  C++ GL   G +  H  + R 
Sbjct: 265 MISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHG-KSVHGQIIRL 323

Query: 322 --NLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             N  P   +     LV  Y + G +  A  + +  +  D V W T+L
Sbjct: 324 QPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTIL 371


>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 611

 Score =  347 bits (890), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 217/594 (36%), Positives = 309/594 (52%), Gaps = 93/594 (15%)

Query: 23  GEWLLNSYAISVSSS-LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81
           G+ LLN  A+S+S   L+Y+  LF+   NP T  +N+LIR+ + S +PL ++  +  +L 
Sbjct: 46  GKLLLNC-AVSISDHVLNYSLRLFHHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLR 104

Query: 82  ASLSRPDTFTFTFTLKA-----CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136
                PD+F+F FTLK      C + + +    +LH    R G++  + V T L+  YA 
Sbjct: 105 HPTLLPDSFSFAFTLKGIANDGCSKRQGI----QLHSHAFRHGFDDHIFVGTTLISMYAE 160

Query: 137 NGVIEAARSVFDNMPERDLVSWNSIIS-CY------------------------------ 165
            G  E AR VFD M + ++V+WN++++ C+                              
Sbjct: 161 CGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGMWRVLGVSFGWREVVFCEMKMRDDASW 220

Query: 166 --------TQASFHLEALKLY-----ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
                      SFH +A   +     +R R  +V L G     +LS+CA  GA   G  L
Sbjct: 221 STMIVGFAKSGSFH-DAFGFFKELLRDRNRPSEVSLTG-----VLSACAQAGAFEFGKIL 274

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H    + GF+  V V NAL+D Y+KCGN+D A  VF+              +   +HGR 
Sbjct: 275 HGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFN--------------ISLAMHGRA 320

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           DEAI  F +M  +G  PD +TF+ LL  CSH GLVE+G   F  M + Y ++P I+HYGC
Sbjct: 321 DEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEHYGC 380

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           +VDLYGRA +L+KA E I    P  P  ++WRTLLG+C IH N+E+ E+    L +++  
Sbjct: 381 MVDLYGRAARLQKAYEFIR-QMPILPNVIIWRTLLGACSIHGNIELAELVKARLAEMDPN 439

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           ++GD+VLL+ +YA     + VA  R+ +    +K  PGWS IEI    + FV  +K +  
Sbjct: 440 NSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGWSMIEIDKVNYGFVAGEKPNEV 499

Query: 451 ADMIYRKLEEIMHRAK-FIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
               + KL EIM R +   GY     + +V     E+  E S + HSEKLA AFG+A  P
Sbjct: 500 TKEAHDKLREIMLRLREEEGYAPQ--VRSVLHDVEEEEKEDSMSKHSEKLAAAFGIAKLP 557

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            G  LRIVKNLR            S  Y  ++IVRDR R+H F+ G CSC DYW
Sbjct: 558 KGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKGGFCSCRDYW 611


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 190/526 (36%), Positives = 297/526 (56%), Gaps = 20/526 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+Q++ P   +WNS+I  + Q      A+  +  M    + +PD   F   L AC 
Sbjct: 416 ARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGI-QPDRVNFMTILGACT 474

Query: 101 RVKALNKCQEL-HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
            + +  + ++L H  V  SG     +V T+L+  YA  G ++ A  +   M E+ + +WN
Sbjct: 475 -IGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWN 533

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
            +I+ Y       EAL+ Y++++ E + +D  T + +L++C    +L  G  +H  A E 
Sbjct: 534 VLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVEC 593

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G    V V NAL +MY+KCG++++A  +F  M  R  +SWN M+  Y  HG  +E +   
Sbjct: 594 GLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLI 653

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           ++M   G   + ITF+ +L  CSH GL+ EG +YFH +     ++   +HYGCLVDL GR
Sbjct: 654 RKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGR 713

Query: 340 AGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
           AGKL++A + I +  P +P  V W +LLG+C++ ++++ G++A   L++L+  ++   V+
Sbjct: 714 AGKLQEAEKYI-SKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVV 772

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ IY+   D +  A+ R+ + S  +K  PG S I++ N+VH+F V D SHP A  IY K
Sbjct: 773 LSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDK 832

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           +EE+    +  GY  D  +V       E+  E   AYHSEKLAIAFGL +TP+ +SL I 
Sbjct: 833 VEELCFAMREAGYVPDTKMVL--HDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIF 890

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S    R+++VRD  R+HHFRDG CSC DYW
Sbjct: 891 KNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 199/410 (48%), Gaps = 18/410 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFA-QSLSPLQAIFYYNHMLMASL 84
           LLN Y      +L  AQ +F ++       WN+++  ++ Q      A+  +  ML+  +
Sbjct: 99  LLNMYG--KCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGV 156

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
            + +  TF   L +     AL K + +H  V  S +   V V+T L+  Y   G +  AR
Sbjct: 157 -KANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDAR 215

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VFD MP R + +WNS+IS Y+ +    EA  +++RM+ E    D  T + +L +C +  
Sbjct: 216 KVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPE 275

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
            L  G  +     E  F   ++VG AL+ MYA+C + + A  VF RM++ ++++W+++I 
Sbjct: 276 TLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIIT 335

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
            +  HG   EA+ +F+ M   G  P+ +TF+ LL G +    +EE +   H++++ + L 
Sbjct: 336 AFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEE-LSRIHLLITEHGLD 394

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG---SCKIHRNVEIGEIAM 381
                   LV++YGR    + A  V +     + + W +++G    C+ H +     + +
Sbjct: 395 DTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDA----LQL 450

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL----IKSNGIKTTP 427
              +Q +         +  + ACT    G  RTRKL    ++ +G+  +P
Sbjct: 451 FRTMQQQGIQPDRVNFMTILGACTIGSHG--RTRKLVHQCVEESGLGGSP 498



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 164/336 (48%), Gaps = 3/336 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A   F +I+     +WN +I A++   S  +A+  ++ ML+  ++ P+  T    L
Sbjct: 7   SLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVA-PNAITLVAVL 65

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            +C   + L     +H   +  G+ +  +V+T L+  Y   G +  A+SVF+ M E+++V
Sbjct: 66  NSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVV 125

Query: 157 SWNSIISCYT-QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           +WN+++  Y+ Q      A++L+ RM  E V  +  T + +L+S     AL  G F+H  
Sbjct: 126 TWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSC 185

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             E      V+V  ALV+ Y KCG+L  A  VF  M  R V +WNSMI  Y +  R  EA
Sbjct: 186 VRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEA 245

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
              F++M   G   D +TFL +L  C +   ++ G ++    +S  + +  +     L+ 
Sbjct: 246 FFIFQRMQQEGERCDRVTFLSILDACVNPETLQHG-KHVRESISETSFELDLFVGTALIT 304

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +Y R    E A +V      ++ + W  ++ +   H
Sbjct: 305 MYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADH 340



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 132/277 (47%), Gaps = 5/277 (1%)

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           Y+  G +  A + F  +  R++VSWN +IS Y+      EAL L+  M  E V  +  TL
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITL 61

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
           V +L+SC     L  GI +H ++ E GF ++  V  AL++MY KCG L  A  VF  M +
Sbjct: 62  VAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAE 121

Query: 254 RDVLSWNSMIVGYGVHGRG-DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           ++V++WN+M+  Y + G     A+  F +ML+ G   + ITFL +L        + +G +
Sbjct: 122 KNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG-K 180

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI-H 371
           + H  V        +     LV+ Y + G L  A +V +         W +++ +  I  
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408
           R+ E   I  +  +Q E         L+ + AC   E
Sbjct: 241 RSGEAFFIFQR--MQQEGERCDRVTFLSILDACVNPE 275



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY++CG+L  A   F ++R R+V+SWN MI  Y  +    EA++ F  ML+ G  P++IT
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
            + +L  C     + +G+    + + R   +  +     L+++YG+ G L  A  V    
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATA-LLNMYGKCGTLLDAQSVFEEM 119

Query: 354 SPSDPVLWRTLLG 366
           +  + V W  +LG
Sbjct: 120 AEKNVVTWNAMLG 132


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 203/604 (33%), Positives = 311/604 (51%), Gaps = 65/604 (10%)

Query: 9   YVGLNKARQAHEIHGE--------WLLNSYAISVSSSLSYAQLLFNQIQN----PQTQAW 56
           Y+  N+ R AH +           W     A +    +  A+ LF+++ +    P   +W
Sbjct: 159 YIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISW 218

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
           N +I  F  S    +A+  +  M +     PD  T +  L A   ++ L     +HG+VI
Sbjct: 219 NGMIAGFNHSGLYSEAVLMFLDMHLRGF-EPDGTTISSVLPAVGDLEDLVMGILIHGYVI 277

Query: 117 RSG--------------YERCVVVS-----------------TNLMRGYAANGVIEAARS 145
           + G              Y +C   S                    + G + NG +E++  
Sbjct: 278 KQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLR 337

Query: 146 VF----DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
           +F    D   E ++VSW S+I+C +Q    +EAL+L+  M+   V  +  T+ CLL +C 
Sbjct: 338 LFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACG 397

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
           ++ AL  G   H  +   G    VYVG+AL+DMYAKCG + ++   F  +  ++++ WN+
Sbjct: 398 NIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNA 457

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           +I GY +HG+  EA+  F  M  +G  PD I+F  +L  CS  GL EEG  YF+ M S+Y
Sbjct: 458 VIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKY 517

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEI 379
            ++  ++HY C+V L  RAGKLE+A  +I    P +P   +W  LL SC++H NV +GE+
Sbjct: 518 GIEARVEHYACMVTLLSRAGKLEQAYAMIR-RMPVNPDACVWGALLSSCRVHNNVSLGEV 576

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
           A + L +LE ++ G+Y+LL+ IYA       V R R ++K+ G++  PG SWIE+ N+VH
Sbjct: 577 AAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVH 636

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
             +  DKSHP    I  KL+++    K +GY  + + V       E   E+    HSEKL
Sbjct: 637 MLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVL--QDVEEQDKEQILCGHSEKL 694

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           A+ FGL  TP G  L+++KNLR            S    R++ VRD  R+HHF++G CSC
Sbjct: 695 AVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSC 754

Query: 548 GDYW 551
           GDYW
Sbjct: 755 GDYW 758



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 187/441 (42%), Gaps = 85/441 (19%)

Query: 12  LNKARQAH----------EIH-GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           L++ RQAH          + H    LL+ YA ++    + A L+ + +  P   ++++LI
Sbjct: 29  LSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMC--FADATLVLDLVPEPNVFSFSTLI 86

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
            AF++      A+  ++ ML   L  PD       +KAC  + AL   +++HG    SG+
Sbjct: 87  YAFSKFHQFHHALSTFSQMLTRGL-MPDNRVLPSAVKACAGLSALKPARQVHGIASVSGF 145

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           +    V ++L+  Y     I  A  VFD M E D+VSW+++++ Y +     EA +L+  
Sbjct: 146 DSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSE 205

Query: 181 M------------------------------RFEDVGLDGF-----TLVCLLSSCAHVGA 205
           M                               F D+ L GF     T+  +L +   +  
Sbjct: 206 MGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLED 265

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKC--------------------------- 238
           L MGI +H    + G V    V +AL+DMY KC                           
Sbjct: 266 LVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFG 325

Query: 239 ----GNLDSAFCVFSRMRKR----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
               G ++S+  +F +++ +    +V+SW SMI     +GR  EA+  F++M +AG  P+
Sbjct: 326 LSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPN 385

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
           S+T   LL  C +   +  G +  H    R  +   +     L+D+Y + G+++ +    
Sbjct: 386 SVTIPCLLPACGNIAALMHG-KAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICF 444

Query: 351 NTSSPSDPVLWRTLLGSCKIH 371
           +     + V W  ++    +H
Sbjct: 445 DGIPTKNLVCWNAVIAGYAMH 465



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 110/211 (52%)

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           +L++ ++ H  ++++G      ++T L+  YA N     A  V D +PE ++ S++++I 
Sbjct: 28  SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIY 87

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            +++      AL  + +M    +  D   L   + +CA + AL     +H IA   GF  
Sbjct: 88  AFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDS 147

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
             +V ++LV MY KC  +  A  VF RM + DV+SW++++  Y   G  DEA   F +M 
Sbjct: 148 DSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMG 207

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
            +G  P+ I++ G++ G +H GL  E V  F
Sbjct: 208 DSGVQPNLISWNGMIAGFNHSGLYSEAVLMF 238


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 188/527 (35%), Positives = 287/527 (54%), Gaps = 21/527 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQ LF+++ N    +WNSL+   +        +  +  M   S  +P+  T    + AC 
Sbjct: 116 AQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACA 175

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + AL++ + LHG V++ G      V  +L+  Y   G ++AA  +F+ MP R LVSWNS
Sbjct: 176 DMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNS 235

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  +    +  + + L+  M+   +  D  T+V LL +C   G       +H      G
Sbjct: 236 MVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCG 295

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F   + +  AL+++YAK G L+++  +F  ++ RD ++W +M+ GY VH  G EAI  F 
Sbjct: 296 FNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFD 355

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            M+  G   D +TF  LL  CSH GLVEEG +YF +M   Y ++P + HY C+VDL GR+
Sbjct: 356 LMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRS 415

Query: 341 GKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G+LE A E+I  S P +P   +W  LLG+C+++ NVE+G+   + L+ L+ +   +Y++L
Sbjct: 416 GRLEDAYELIK-SMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIML 474

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + IY+        ++ R L+K   +   PG S+IE GN++H+FVV D+ HP +D I+ KL
Sbjct: 475 SNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKL 534

Query: 459 EEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
           EE++ + +  G       V   +      D + K    HSEKLAIAFGL  T  G  L I
Sbjct: 535 EELIRKIREAGCAPKTEFVLHDIDEEVKVDMINK----HSEKLAIAFGLLVTGSGVPLII 590

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            KNLR            S+   R +I+RD  R+HHF DGLCSC DYW
Sbjct: 591 TKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 191/511 (37%), Positives = 288/511 (56%), Gaps = 19/511 (3%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W SLI  +AQ+  P +A+     ML     +P+ FTF   LKA     +    +++H  
Sbjct: 8   SWTSLIAGYAQNDMPDEALGLLLGMLRGRF-KPNGFTFASLLKAAGASASSGIGEQIHAL 66

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
            ++  +   V V + L+  YA  G ++ A +VFD +  ++ VSWN++I+ + +       
Sbjct: 67  TVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETT 126

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L ++  M+        FT   + S+ A +GAL  G ++H    + G   S +VGN ++DM
Sbjct: 127 LLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDM 186

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAK G++  A  VF  + K+D+++WNSM+  +  +G G EA++ F++M   G H + ITF
Sbjct: 187 YAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITF 246

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           L +L  CSH GLV+EG +YF MM   +NL+P I HY  +VDL GRAG L  AL  I    
Sbjct: 247 LSILTACSHGGLVKEGKQYFDMM-KEHNLEPEIDHYVTVVDLLGRAGLLNDALVFI-FKM 304

Query: 355 PSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           P  P   +W  LLGSC++H+N +IG+ A  ++ +L+    G  VLL  IYA T   +  A
Sbjct: 305 PMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAA 364

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           R RK++K+ G+K  P  SW+EI N VH FV +D +HP ++ IY+K EEI  + +  GY  
Sbjct: 365 RVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVP 424

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           +   V +     E   +    YHSEK+A+AF L   P G ++RI+KN+R           
Sbjct: 425 NTDYVLLHVDEQER--QAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRY 482

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S  + R+++VRD  R+HHF  G CSCGDYW
Sbjct: 483 ISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 3/217 (1%)

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           M  RD+ SW S+I+ Y Q     EAL L   M       +GFT   LL +     +  +G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H +  +  + + VYVG+AL+DMYA+CG +D A  VF ++  ++ +SWN++I G+   
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV-EYFHMMVSRYNLKPGIK 328
           G G+  +  F +M   GF     T+  +    +  G +E+G   + HM+ S   L   + 
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 180

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +   ++D+Y ++G +  A +V +     D V W ++L
Sbjct: 181 N--TILDMYAKSGSMIDARKVFDHVDKKDLVTWNSML 215



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 115/242 (47%), Gaps = 4/242 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA      ++ A  +F+Q+++    +WN+LI  FA+       +  +  M   
Sbjct: 79  GSALLDMYARCGRMDMAIA--VFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRN 136

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
                  FT++    A   + AL + + +H  +I+SG      V   ++  YA +G +  
Sbjct: 137 GF-EATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMID 195

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR VFD++ ++DLV+WNS+++ + Q     EA+  +E MR   V L+  T + +L++C+H
Sbjct: 196 ARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSH 255

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC-VFSRMRKRDVLSWNS 261
            G +  G     +  E      +     +VD+  + G L+ A   +F    K     W +
Sbjct: 256 GGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGA 315

Query: 262 MI 263
           ++
Sbjct: 316 LL 317


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 199/567 (35%), Positives = 306/567 (53%), Gaps = 48/567 (8%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQI--QNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMA 82
           L++ YA   +  +S+A+ +F+ +     Q   WN++I  +AQ      +AI  ++ M   
Sbjct: 302 LVDMYA--SNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAE 359

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
           +   P   T    L AC R +     + +HG+V++        V   LM  YA  G ++ 
Sbjct: 360 AGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDE 419

Query: 143 ARSVFDNMPERDLVSWNSIIS-CYTQASFHLEALKLYERMRF-------------EDVGL 188
           A ++F  +  RD+VSWN++I+ C  Q     EA +L   M+              +D  +
Sbjct: 420 AHTIFAMIDLRDIVSWNTLITGCIVQGLIS-EAFQLVREMQLPSSAASGETMLEGDDTSV 478

Query: 189 DG-------FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           DG        TL+ LL  CA + A   G  +H  A        + VG+ALVDMYAKCG L
Sbjct: 479 DGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCL 538

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDSITFLGLLCG 300
             A  VF R+ +R+V++WN +I+ YG+HG GDEA++ F +M+  G   P+ +TF+  L  
Sbjct: 539 ALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAA 598

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           CSH GLV+ G+E F  M   Y  +P    + C+VD+ GRAG+L++A  +I++ +P +  +
Sbjct: 599 CSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQV 658

Query: 361 --WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
             W T+LG+C++HRNV++G IA + L +LE   A  YVLL  IY+     E     R ++
Sbjct: 659 SAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMM 718

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
           +  G+   PG SWIE+   +H+F+  + +HP++  ++  ++ +  R +  GY  D S V 
Sbjct: 719 RQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVL 778

Query: 479 VSGSSSEDFLEKSSA--YHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
                  D  EK++   YHSEKLAIAFGL   P G ++R+ KNLR            S  
Sbjct: 779 ----HDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRM 834

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             R++++RD  R+HHFRDG CSCGDYW
Sbjct: 835 VGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 150/338 (44%), Gaps = 21/338 (6%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSG--YERCVVVSTNLMRGYAANGVIEAARS 145
           D F     +K+   ++     + +HG  +R    +     VS  L+  YA  G ++AA +
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 146 VFDNMPE--RDLVSWNSIISC---YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
           +F   P   RD VS+NS+IS    + +    L+AL    R    D  +  FTLV +L +C
Sbjct: 107 LFAATPPDLRDAVSYNSLISALCLFRRWGHALDAL----RDMLADHEVSSFTLVSVLLAC 162

Query: 201 AHVG--ALNMGIFLHRIACEMGFVE---SVYVGNALVDMYAKCGNLDSAFCVF--SRMRK 253
           +H+      +G   H  A + GF++     +  NAL+ MYA+ G +D A  +F  S    
Sbjct: 163 SHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGV 222

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
            D+++WN+MI      GR +EA+     M+  G  PD +TF   L  CS   L+  G E 
Sbjct: 223 GDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREV 282

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL--WRTLLGSCKIH 371
              ++   +L         LVD+Y    ++  A  V +        L  W  ++     H
Sbjct: 283 HAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQH 342

Query: 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIY-ACTKDE 408
             ++   I + + ++ EA  A     +A +  AC + E
Sbjct: 343 GGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSE 380


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 189/524 (36%), Positives = 290/524 (55%), Gaps = 16/524 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF  + +  +  W +++    Q+   L+A+  +  M    +   D +TF   L AC 
Sbjct: 231 AKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVG-IDQYTFGSILTACG 289

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + AL + +++H ++ R+ YE  V V + L+  Y+    I  A +VF  M  R+++SW +
Sbjct: 290 ALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTA 349

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I  Y Q +   EA++ +  M+ + +  D FTL  ++SSCA++ +L  G   H +A   G
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            +  + V NALV +Y KCG+++ A  +F  M   D +SW +++ GY   G+  E I  F+
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFE 469

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML  G  PD +TF+G+L  CS  GLVE+G +YF  M   + + P   HY C++DLY R+
Sbjct: 470 KMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRS 529

Query: 341 GKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+ ++A E I     S D   W TLL SC++  N+EIG+ A +NL++ +  +   YVLL 
Sbjct: 530 GRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLC 589

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
           +++A       VA  R+ ++   +K  PG SWI+  N+VH F  DD+SHP +  IY KLE
Sbjct: 590 SMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLE 649

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
            +  +    GY  D S V    + ++     S  +HSEKLAIAFGL   P    +RIVKN
Sbjct: 650 WLNSKMAEEGYKPDVSSVLHDVADADKVHMIS--HHSEKLAIAFGLIFVPQEMPIRIVKN 707

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    RD++VRD VR+H F DG CSCGD+W
Sbjct: 708 LRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 177/367 (48%), Gaps = 38/367 (10%)

Query: 36  SSLSYAQL------LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
           S+L++++L      LF  +      ++N+LI  F+ + SP +++  Y  +L     RP  
Sbjct: 87  SALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTR 146

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
            T +  +     +        +H  V+R G+     V + L+  YA  G+I  AR VF  
Sbjct: 147 ITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQE 206

Query: 150 MP-------------------------------ERDLVSWNSIISCYTQASFHLEALKLY 178
           M                                +RD ++W ++++  TQ    LEAL ++
Sbjct: 207 MEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVF 266

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
            RMR E VG+D +T   +L++C  + AL  G  +H       + ++V+VG+ALVDMY+KC
Sbjct: 267 RRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKC 326

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
            ++  A  VF RM  R+++SW +MIVGYG +   +EA+  F +M M G  PD  T   ++
Sbjct: 327 RSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVI 386

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C++   +EEG + FH +     L   I     LV LYG+ G +E A  + +  S  D 
Sbjct: 387 SSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445

Query: 359 VLWRTLL 365
           V W  L+
Sbjct: 446 VSWTALV 452



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 144/358 (40%), Gaps = 38/358 (10%)

Query: 79  MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
           +L   L  P TF     L A  +   L + +     V     +  +     L+   A + 
Sbjct: 38  ILKTFLQAPPTFLLNHLLTAYAKSGRLARARR----VFDEMPDPNLFTRNALLSALAHSR 93

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLL 197
           ++     +F +MPERD VS+N++I+ ++       +++LY  + R E V     TL  ++
Sbjct: 94  LVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMI 153

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK-------------------- 237
              + +    +G  +H     +GF    +VG+ LVDMYAK                    
Sbjct: 154 MVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVV 213

Query: 238 -----------CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
                      C  ++ A  +F  M  RD ++W +M+ G   +G   EA+  F++M   G
Sbjct: 214 MYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEG 273

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
              D  TF  +L  C     +EEG +  H  ++R   +  +     LVD+Y +   +  A
Sbjct: 274 VGIDQYTFGSILTACGALAALEEGKQ-IHAYITRTWYEDNVFVGSALVDMYSKCRSIRLA 332

Query: 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
             V    +  + + W  ++     +   E    A   + Q++     D+ L + I +C
Sbjct: 333 EAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEM-QMDGIKPDDFTLGSVISSC 389



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 15/135 (11%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A  LF+++      +W +L+  +AQ     + I  +  ML   L +PD  TF   L
Sbjct: 429 SIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGL-KPDGVTFIGVL 487

Query: 97  KACERVKALNK-------CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
            AC R   + K        Q+ HG V    +  C++   +L   Y+ +G  + A      
Sbjct: 488 SACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMI---DL---YSRSGRFKEAEEFIKQ 541

Query: 150 MPER-DLVSWNSIIS 163
           MP   D   W +++S
Sbjct: 542 MPHSPDAFGWATLLS 556


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 188/527 (35%), Positives = 287/527 (54%), Gaps = 21/527 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQ LF+++ N    +WNSL+   +        +  +  M   S  +P+  T    + AC 
Sbjct: 173 AQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACA 232

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + AL++ + LHG V++ G      V  +L+  Y   G ++AA  +F+ MP R LVSWNS
Sbjct: 233 DMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNS 292

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  +    +  + + L+  M+   +  D  T+V LL +C   G       +H      G
Sbjct: 293 MVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCG 352

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F   + +  AL+++YAK G L+++  +F  ++ RD ++W +M+ GY VH  G EAI  F 
Sbjct: 353 FNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFD 412

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            M+  G   D +TF  LL  CSH GLVEEG +YF +M   Y ++P + HY C+VDL GR+
Sbjct: 413 LMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRS 472

Query: 341 GKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G+LE A E+I  S P +P   +W  LLG+C+++ NVE+G+   + L+ L+ +   +Y++L
Sbjct: 473 GRLEDAYELIK-SMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIML 531

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + IY+        ++ R L+K   +   PG S+IE GN++H+FVV D+ HP +D I+ KL
Sbjct: 532 SNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKL 591

Query: 459 EEIMHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
           EE++ + +  G       V   +      D + K    HSEKLAIAFGL  T  G  L I
Sbjct: 592 EELIRKIREAGCAPKTEFVLHDIDEEVKVDMINK----HSEKLAIAFGLLVTGSGVPLII 647

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            KNLR            S+   R +I+RD  R+HHF DGLCSC DYW
Sbjct: 648 TKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/523 (36%), Positives = 295/523 (56%), Gaps = 22/523 (4%)

Query: 44   LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
            +F  I+     +WN+LI  F ++  P +A+  +  M    L  PD+++   +L AC  + 
Sbjct: 557  VFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGL-MPDSYSLASSLSACGTIS 615

Query: 104  ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
                  ++HG++I++G      V   L+  YA  G + +A  +F+ + E+ LV+WNS+I 
Sbjct: 616  FSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMIC 674

Query: 164  CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
             ++Q  + +EA+ L+++M    V +D  T + ++ +C+H+G L  G ++H      G  +
Sbjct: 675  GFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRK 734

Query: 224  SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
              Y+  AL DMY+KCG L  A  VF RM +R ++SW+ MI GYG+HG+ +  IS F QML
Sbjct: 735  DSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQML 794

Query: 284  MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             +G  P+ ITF+ +L  CSH G VEEG  YF+ M S + ++P   H+ C+VDL  RAG L
Sbjct: 795  GSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDL 853

Query: 344  EKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
              A ++I +   P++  +W  LL  C+IH+ ++I +   KNL+ ++ A  G Y LL+ IY
Sbjct: 854  NGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIY 913

Query: 403  ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI- 461
            A     +   + R ++KS G++  PG+S IEI  ++++F   D SH     IYR LE   
Sbjct: 914  AEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFR 973

Query: 462  -MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
             +  A+      D S+V  S  + E+    +   HSEKLAIAFG+  T  GT+LRI KNL
Sbjct: 974  SLVHAQVYDSEPDNSIVGTSKFNKEN----NVVSHSEKLAIAFGIINTRPGTTLRISKNL 1029

Query: 521  R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R            S    R++I+RD  R+H FR+G CSC DYW
Sbjct: 1030 RVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 1072



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 157/374 (41%), Gaps = 67/374 (17%)

Query: 94  FTLKACERVKALNKC------QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           FTL +   + +  +C       +LH  +  +G  R    ST L+  YA  G+ E+++ VF
Sbjct: 344 FTLNSSRSLTSHKRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVF 403

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV--------------------- 186
           D  P+ D   W  +I CY    F  EA+ LY  M ++D                      
Sbjct: 404 DTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDL 463

Query: 187 -----------GLDGF-------------TLVCLLSSCAHVGALNMGIFLHRIA---CEM 219
                      GLD F             T++ +  +C+ +G+L +G  L R+       
Sbjct: 464 SVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGR-LGRVKEGRSVH 522

Query: 220 GFV-------ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           GFV       E  ++G AL+++YA  GNL     VF  ++++ +LSWN++I  +  +G+ 
Sbjct: 523 GFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQP 582

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           +EA+  F QM   G  PDS +    L  C      + G +    ++   N    +++   
Sbjct: 583 EEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQN--A 640

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRN-VEIGEIAMKNLVQLEAAS 391
           L+D+Y + G +  A ++         V W +++  C   +N   +  I + + + +    
Sbjct: 641 LIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMI--CGFSQNGYSVEAITLFDQMYMNCVK 698

Query: 392 AGDYVLLATIYACT 405
                 L+ I AC+
Sbjct: 699 MDKLTFLSVIQACS 712


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/514 (36%), Positives = 294/514 (57%), Gaps = 15/514 (2%)

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQE 110
           P   A+N+ I   +++    +A+  ++ M  A     D +TF   L +   ++       
Sbjct: 4   PPGVAYNAAISRCSRAGLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAAADA 63

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
           LH  ++R+G    + V+  L+  YA      AAR++FD MP RD+V+W S+++   ++  
Sbjct: 64  LHALLLRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGS 123

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
           H  AL++Y  M    V  D + +   LSSCA    L +G  +H  A  +G    + VGN+
Sbjct: 124 HDAALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNS 183

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           LV MYAK G+L  A  VF   R R  ++W ++IVGY  +GRG+E++  + +M+ +G  PD
Sbjct: 184 LVSMYAKTGSLREARKVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPD 243

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
            +TF+GLL  CSH GLV+ G  +F  M + + + PG  HY C+VD+ GRAG+L++A+E++
Sbjct: 244 YVTFIGLLFACSHAGLVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELL 303

Query: 351 NTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409
           + S+   D  +W+ LLG+C+ HRN E+ E A + + +L+   A  Y++L+ +Y+  +   
Sbjct: 304 DQSTMKLDATVWKALLGACRTHRNAELAERAAEMVWRLDPTDAVPYIMLSNLYSRERRWS 363

Query: 410 GVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIG 469
            VAR R L+KS GI   PG SW+      H F V+D+ HP  D IYRK+EE+M + +  G
Sbjct: 364 DVARIRTLMKSRGIAKEPGCSWVVASGVTHLFYVEDRGHPRTDEIYRKVEEMMEKVRAEG 423

Query: 470 YTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-------- 521
           +  D    A+   + E   EK  A+HSE+LA+AFGL   P G  +R+ KNLR        
Sbjct: 424 FVADTDW-ALQDEAPEG-REKGLAHHSERLAVAFGLLALPAGAPVRVFKNLRVCGDCHVA 481

Query: 522 ----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               +  Y R++I+RD   +HH RDG+CSCGDYW
Sbjct: 482 IKMVAKVYGREIILRDSNCFHHMRDGVCSCGDYW 515



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 3/225 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+++       W SL+   A+S S   A+  Y  M+ AS   PD +     L +C 
Sbjct: 96  ARALFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRDMV-ASGVEPDEYVVAAALSSCA 154

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               L   Q +H   +R G E  + V  +L+  YA  G +  AR VFD    R  V+W +
Sbjct: 155 GSTTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREARKVFDATRLRCPVTWTA 214

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIACEM 219
           +I  Y Q     E+L++Y  M       D  T + LL +C+H G ++ G      +  + 
Sbjct: 215 LIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAGLVDAGRAHFKSMQADH 274

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSR-MRKRDVLSWNSMI 263
           G          +VD+  + G LD A  +  +   K D   W +++
Sbjct: 275 GITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKALL 319


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 198/566 (34%), Positives = 296/566 (52%), Gaps = 53/566 (9%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           +  L+ A+ +F  +      AWN++I  +       +A+     M    + + D  T+T 
Sbjct: 236 NDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGI-QFDDITYTT 294

Query: 95  TLKACERVKALNKCQELHGFVIRS----GYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
            + AC  V +    +++H +++++     +  C+ VS  L+  Y  N  ++ AR +F  M
Sbjct: 295 IISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAM 354

Query: 151 PERDLVSWNSIISCYT-------------------------------QASFHLEALKLYE 179
           P R++++WN+I+S Y                                Q  F  E LKL++
Sbjct: 355 PVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFK 414

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           +MR +      F     L++C+ +GAL  G  LH     +G+  S+ VGNA++ MYAKCG
Sbjct: 415 QMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCG 474

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            +++A  VF  M   D++SWNSMI   G HG G +AI  F QML  G  PD ITFL +L 
Sbjct: 475 VVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLT 534

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT--SSPSD 357
            CSH GLVE+G  YF+ M+  Y + P   HY  +VDL+ RAG    A  VI++  S P  
Sbjct: 535 ACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGA 594

Query: 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
           PV W  LL  C+IH N+++G  A + L +L   + G YVLL+ IYA       VA+ RKL
Sbjct: 595 PV-WEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKL 653

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV 477
           ++   ++  P  SWIE+ N+VH F+VDD  HP+   +YR LE++    K +GY  D   V
Sbjct: 654 MRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFV 713

Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
                  +   E + + HSEKLA+ FG+   P   ++R+ KN+R            S   
Sbjct: 714 LHDMEYEQK--EHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVA 771

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R++IVRDR R+HHF++G CSC DYW
Sbjct: 772 RREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 126/504 (25%), Positives = 200/504 (39%), Gaps = 115/504 (22%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ--SLSPLQAIF-----------YYNHMLM 81
           SS++ YA+ LF +I NP   A  +LI A+    +L   + IF           +YN M+ 
Sbjct: 61  SSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMIT 120

Query: 82  ASLS-------------------RPDTFTFTFTLKACER-VKALNKCQELHGFVIRSGY- 120
                                  RPD FTFT  L A    V    +C ++H  V+++G  
Sbjct: 121 GYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMG 180

Query: 121 ---------------------------------------ERCVVVSTNLMRGYAANGVIE 141
                                                  +R  +  T ++ GY  N  + 
Sbjct: 181 CVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLN 240

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            AR VF+ M E    +WN++IS Y       EAL L  +MRF  +  D  T   ++S+CA
Sbjct: 241 GAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACA 300

Query: 202 HVGALNMGIFLHR--IACEMGFVES--VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           +VG+  MG  +H   +  E+    S  + V NAL+ +Y K   +D A  +F  M  R+++
Sbjct: 301 NVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNII 360

Query: 258 SWNSMIVGYGVHGR-------------------------------GDEAISFFKQMLMAG 286
           +WN+++ GY   GR                               GDE +  FKQM + G
Sbjct: 361 TWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDG 420

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
           F P    F G L  CS  G +E G +  H  +     +  +     ++ +Y + G +E A
Sbjct: 421 FEPCDFAFAGALTACSVLGALENGRQ-LHAQLVHLGYESSLSVGNAMISMYAKCGVVEAA 479

Query: 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
             V  T    D V W +++ +   H +  +  I + + +  E         L  + AC+ 
Sbjct: 480 ESVFVTMPSVDLVSWNSMIAALGQHGH-GVKAIELFDQMLKEGVFPDRITFLTVLTACSH 538

Query: 407 D---EEGVARTRKLIKSNGIKTTP 427
               E+G      +++S GI  TP
Sbjct: 539 AGLVEKGRHYFNSMLESYGI--TP 560



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 37/248 (14%)

Query: 231 LVDMYAKCGNLDSAFCVF--SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           L+  Y   GNL+    +F  + +  RD + +N+MI GY  +G G  A+  F+ M    F 
Sbjct: 85  LITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFR 144

Query: 289 PDSITFLGLL------------CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           PD  TF  +L            CG  H  +V+ G+      V    L   +K      +L
Sbjct: 145 PDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRAS---EL 201

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNV----EIGEIAMKNLVQLEAASA 392
                 +  A ++ +     D + W T++     + ++    E+ E  ++NL     A  
Sbjct: 202 GIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMI 261

Query: 393 GDYVLLATIYACTKDEEGVARTRKL----IKSNGIKTTPGWSW------IEIGNQVHKFV 442
             YV       C   +E +   RK+    I+ + I  T   S        ++G Q+H ++
Sbjct: 262 SGYV------HCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYI 315

Query: 443 VDDKSHPD 450
           + ++ +P+
Sbjct: 316 LKNELNPN 323


>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
          Length = 613

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/568 (33%), Positives = 310/568 (54%), Gaps = 23/568 (4%)

Query: 4   KKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           K HAR+V L   R            + A     S++YA  +F  + +P+   +N+L+R +
Sbjct: 49  KAHARHVKLGLDRSPRHARPLLAACALAADWPGSMAYAASIFAALDDPEAFDYNTLMRGY 108

Query: 64  AQSLSPLQAIFYYNHMLMASLS----RPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
             +             L   +      PD++TF F  KAC ++ AL + ++L G +++ G
Sbjct: 109 VAAAGGGGRDPAAALRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQEGRQLQGHLVKLG 168

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEALKL 177
           ++R      +L+  Y   G  + AR  F+ M   E+   SW+++++ YT+A    E ++ 
Sbjct: 169 FQRDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVES 228

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
           +  M       D  ++V  LS+CAH+GA ++G  +H          + ++  +LVDMYAK
Sbjct: 229 FGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAK 288

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
           CG +++A  VF  M  ++  ++++M+ G  +HG G +A+  F  M+  G  PD+  ++G+
Sbjct: 289 CGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGV 348

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           L  CS  GL+EEG+  F  M   + L P  +HYGC+VDL  RAG+L+ A  +I  S P+ 
Sbjct: 349 LNACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIG-SMPTG 407

Query: 358 P--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415
           P    WR+LL +C+IH N+E+ E A++ L +L A +AGDY++L+ ++A   + +  A  R
Sbjct: 408 PTDTAWRSLLNACRIHGNLELAERALQELERLGATNAGDYIILSDMHARAHNRDAAAARR 467

Query: 416 KLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES 475
                 G+   PG+S +E+    H+FV  D+SHP AD IY  L ++  + +F GYT D S
Sbjct: 468 TEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSHPRADDIYEMLHQMEWQLRFEGYTPDTS 527

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
            +A+     E    +  A HS+KLA+AFGL +TP+G  +R+V NLR            S 
Sbjct: 528 ELALDAGEEEK--RRVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRMSKECHAYSALISE 585

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + R+++VRDR R+H F+ G CSC +YW
Sbjct: 586 IFGREIVVRDRNRFHRFKRGACSCRNYW 613


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 177/445 (39%), Positives = 265/445 (59%), Gaps = 18/445 (4%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           + VVV   ++ G+  NG ++ AR VF  M ERD  +W+++I  Y +  + LEAL L+ RM
Sbjct: 270 KPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRM 329

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           + E + L+  +L+ +LS C  + +L+ G  +H       F + +YV + L+ MY KCGNL
Sbjct: 330 QREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNL 389

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
             A  VF+R   +DV+ WNSMI GY  HG G+EA++ F  M  +G  PD +TF+G+L  C
Sbjct: 390 VRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSAC 449

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--V 359
           S+ G V+EG+E F  M  +Y ++PGI+HY CLVDL GRA ++ +A++++    P +P  +
Sbjct: 450 SYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVE-KMPMEPDAI 508

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
           +W  LLG+C+ H  +++ E+A++ L QLE  +AG YVLL+ +YA       V   R+ IK
Sbjct: 509 VWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIK 568

Query: 420 SNGIKTTPGWSWIEIGNQVHKFV-VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
           +  +   PG SWIE+  +VH F   D K HP+  +I + LE++    +  GY  D S V 
Sbjct: 569 ARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVL 628

Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
                 E     S  YHSEKLA+A+GL   P+G  +R++KNLR            +    
Sbjct: 629 HDVDEEEK--THSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTG 686

Query: 527 RDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++I+RD  R+HHF+DG CSC DYW
Sbjct: 687 REIILRDANRFHHFKDGHCSCKDYW 711



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 165/370 (44%), Gaps = 23/370 (6%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           LS A+ +F+ + +    +W S++R + ++    +A   + HM        +  ++T  L 
Sbjct: 102 LSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHM-----PHKNVVSWTVMLG 156

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
              +   ++  ++L   +     E+ VV  TN++ GY   G ++ AR++FD MP+R++V+
Sbjct: 157 GLLQEGRVDDARKLFDMMP----EKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVT 212

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W +++S Y +      A KL+E M       +  +   +L    H G +     L     
Sbjct: 213 WTAMVSGYARNGKVDVARKLFEVMPER----NEVSWTAMLLGYTHSGRMREASSLF---- 264

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +   V+ V V N ++  +   G +D A  VF  M++RD  +W++MI  Y   G   EA+ 
Sbjct: 265 DAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALG 324

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++M   G   +  + + +L  C     ++ G +  H  + R      +     L+ +Y
Sbjct: 325 LFRRMQREGLALNFPSLISVLSVCVSLASLDHG-KQVHAQLVRSEFDQDLYVASVLITMY 383

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDY 395
            + G L +A +V N     D V+W +++     H    +GE A+     +        D 
Sbjct: 384 VKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQH---GLGEEALNVFHDMCSSGVPPDDV 440

Query: 396 VLLATIYACT 405
             +  + AC+
Sbjct: 441 TFIGVLSACS 450



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 146/343 (42%), Gaps = 62/343 (18%)

Query: 28  NSYAISV---SSSLSYAQLLFNQIQNPQ--TQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           +SYAI+    +  L +A+ +F++   P     +WN+++ A+ ++  P +A+  +  M   
Sbjct: 25  SSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM--- 81

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
                                                 +R  V    L+ G+  NG++  
Sbjct: 82  -------------------------------------PQRNTVSWNGLISGHIKNGMLSE 104

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR VFD MP+R++VSW S++  Y +     EA +L+  M  ++V     +   +L     
Sbjct: 105 ARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV----VSWTVMLGGLLQ 160

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
            G ++    L  +  E    + V     ++  Y + G LD A  +F  M KR+V++W +M
Sbjct: 161 EGRVDDARKLFDMMPE----KDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAM 216

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           + GY  +G+ D A   F+ M       + +++  +L G +H G + E    F  M     
Sbjct: 217 VSGYARNGKVDVARKLFEVMP----ERNEVSWTAMLLGYTHSGRMREASSLFDAM----P 268

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +KP +     ++  +G  G+++KA  V       D   W  ++
Sbjct: 269 VKPVVVCNEMIMG-FGLNGEVDKARRVFKGMKERDNGTWSAMI 310



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 120/244 (49%), Gaps = 3/244 (1%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93
           ++  +  A+ +F  ++      W+++I+ + +    L+A+  +  M    L+  +  +  
Sbjct: 284 LNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLAL-NFPSLI 342

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
             L  C  + +L+  +++H  ++RS +++ + V++ L+  Y   G +  A+ VF+  P +
Sbjct: 343 SVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLK 402

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL- 212
           D+V WNS+I+ Y+Q     EAL ++  M    V  D  T + +LS+C++ G +  G+ L 
Sbjct: 403 DVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELF 462

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGR 271
             + C+      +     LVD+  +   ++ A  +  +M  + D + W +++     H +
Sbjct: 463 ETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMK 522

Query: 272 GDEA 275
            D A
Sbjct: 523 LDLA 526



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 21/247 (8%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDN--MPERDLVSWNSIISCYTQASFHLEALKLYE 179
           +C   S+  +  YA NG ++ AR VFD   +P R + SWN++++ Y +A    EAL L+E
Sbjct: 20  QCTTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFE 79

Query: 180 RM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
           +M +   V  +G     L+S     G L+      R   +     +V    ++V  Y + 
Sbjct: 80  KMPQRNTVSWNG-----LISGHIKNGMLSEA----RRVFDTMPDRNVVSWTSMVRGYVRN 130

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G++  A  +F  M  ++V+SW  M+ G    GR D+A   F  M       D +    ++
Sbjct: 131 GDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMP----EKDVVAVTNMI 186

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
            G   +G ++E    F  M  R      +  +  +V  Y R GK++ A ++       + 
Sbjct: 187 GGYCEEGRLDEARALFDEMPKR-----NVVTWTAMVSGYARNGKVDVARKLFEVMPERNE 241

Query: 359 VLWRTLL 365
           V W  +L
Sbjct: 242 VSWTAML 248


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/515 (37%), Positives = 296/515 (57%), Gaps = 30/515 (5%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
            +N++IR  A   +P  A+  ++HM   ++   D FTF   LK+ +    LN    +H  
Sbjct: 66  PYNAVIRHVALH-APSLALALFSHMHRTNVPF-DHFTFPLILKSSK----LNP-HCIHTL 118

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           V++ G+   + V   L+  Y  +G + A+  +FD MP RDL+SW+S+ISC+ +     EA
Sbjct: 119 VLKLGFHSNIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEA 178

Query: 175 LKLYERMRFE--DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           L L+++M+ +  D+  DG  ++ ++S+ + +GAL +GI++H     +G   +V +G+AL+
Sbjct: 179 LTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALI 238

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           DMY++CG++D +  VF  M  R+V++W ++I G  VHGRG EA+  F  M+ +G  PD I
Sbjct: 239 DMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRI 298

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN- 351
            F+G+L  CSH GLVEEG   F  M S Y ++P ++HYGC+VDL GRAG + +A + +  
Sbjct: 299 AFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEG 358

Query: 352 TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---E 408
                + V+WRTLLG+C  H  + + E A + + +L+    GDYVLL+  Y    +   +
Sbjct: 359 MRVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKK 418

Query: 409 EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFI 468
           EGV   R  ++ + I   PG S + I    H+FV  D SHP  + I R L  ++   K  
Sbjct: 419 EGV---RNSMRESKIVKEPGLSLVHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDTVKLG 475

Query: 469 GYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------- 521
           GYT   S   V     E+  E S  YHSEKLA+AF L    D  ++R++KNLR       
Sbjct: 476 GYTP--STKNVLHDIQEEEKEHSLGYHSEKLAVAFVLLYHRDRKTIRVIKNLRICYDCHS 533

Query: 522 -----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                S  + RD+++RDR R+HHFR G CSC D+W
Sbjct: 534 FMKHVSGFFDRDIVIRDRSRFHHFRKGSCSCRDFW 568



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 5/241 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM-LMASL 84
           L+NSY    S SL  +  LF+++      +W+SLI  FA+   P +A+  +  M L  S 
Sbjct: 134 LINSYG--TSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESD 191

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
             PD       + A   + AL     +H F+ R G    V + + L+  Y+  G I+ + 
Sbjct: 192 ILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSV 251

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VFD MP R++V+W ++I+         EAL+ +  M    +  D    + +L +C+H G
Sbjct: 252 KVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGG 311

Query: 205 ALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR-DVLSWNSM 262
            +  G      +  E G   ++     +VD+  + G +  AF     MR R + + W ++
Sbjct: 312 LVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTL 371

Query: 263 I 263
           +
Sbjct: 372 L 372


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/566 (35%), Positives = 304/566 (53%), Gaps = 31/566 (5%)

Query: 12  LNKARQAHEIHG-------EWLLNSYAISVSS-----SLSYAQLLFNQIQNPQTQAWNSL 59
           L   R    IHG       E+++N     + +     S+  A+L+F  + +    +WN++
Sbjct: 256 LKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTM 315

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           I  +AQ+    +A   +  ML   +  P   +    L AC  +  L + + +H  +    
Sbjct: 316 IDGYAQNGESEEAFATFLKMLDEGVE-PTNVSMMGALHACANLGDLERGRYVHRLLDEKK 374

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
               V V  +L+  Y+    ++ A SVF N+  + +V+WN++I  Y Q     EAL L+ 
Sbjct: 375 IGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFC 434

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
            M+  D+  D FTLV ++++ A +       ++H +A      ++V+V  AL+D +AKCG
Sbjct: 435 EMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCG 494

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            + +A  +F  M++R V++WN+MI GYG +G G EA+  F +M      P+ ITFL ++ 
Sbjct: 495 AIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIA 554

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP- 358
            CSH GLVEEG+ YF  M   Y L+P + HYG +VDL GRAG+L+ A + I    P  P 
Sbjct: 555 ACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQ-DMPVKPG 613

Query: 359 -VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
             +   +LG+C+IH+NVE+GE     L  L+    G +VLLA +YA     + VAR R  
Sbjct: 614 ITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTA 673

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV 477
           ++  GI+ TPG S +E+ N+VH F     +HP +  IY  LE +    K  GY  D + +
Sbjct: 674 MEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSI 733

Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
                  ED  E+  + HSE+LAIAFGL  T  GT++ I KNLR            S+  
Sbjct: 734 H---DVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVT 790

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R++IVRD  R+HHF++G+CSCGDYW
Sbjct: 791 GREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 175/330 (53%), Gaps = 2/330 (0%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           +S++ A  +F  +++     ++++++ +A++ +   A+ +Y  M    +  P  + FT+ 
Sbjct: 90  NSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEV-MPVVYDFTYL 148

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+       L + +E+HG VI +G++  +   T ++  YA    IE A  +F+ MP+RDL
Sbjct: 149 LQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDL 208

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSWN++++ Y Q  F   A+++  +M+      D  TLV +L + A + AL +G  +H  
Sbjct: 209 VSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGY 268

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A   GF   V V  A++D Y KCG++ SA  VF  M  R+V+SWN+MI GY  +G  +EA
Sbjct: 269 AFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEA 328

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
            + F +ML  G  P +++ +G L  C++ G +E G  Y H ++    +   +     L+ 
Sbjct: 329 FATFLKMLDEGVEPTNVSMMGALHACANLGDLERG-RYVHRLLDEKKIGFDVSVMNSLIS 387

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y +  +++ A  V         V W  ++
Sbjct: 388 MYSKCKRVDIAASVFGNLKHKTVVTWNAMI 417



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 206/428 (48%), Gaps = 22/428 (5%)

Query: 16  RQAHEIHGEWLLNSYAISVSSSLSYAQL------------LFNQIQNPQTQAWNSLIRAF 63
           R+  EIHG  + N +  ++ +  +   L            +F ++      +WN+++  +
Sbjct: 159 RRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGY 218

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           AQ+    +A+     M  A   +PD+ T    L A   +KAL   + +HG+  R+G+E  
Sbjct: 219 AQNGFARRAVQVVLQMQEAG-QKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYM 277

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V V+T ++  Y   G + +AR VF  M  R++VSWN++I  Y Q     EA   + +M  
Sbjct: 278 VNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLD 337

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           E V     +++  L +CA++G L  G ++HR+  E      V V N+L+ MY+KC  +D 
Sbjct: 338 EGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDI 397

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  VF  ++ + V++WN+MI+GY  +G  +EA++ F +M      PDS T + ++   + 
Sbjct: 398 AASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALAD 457

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
             +  +  ++ H +  R  +   +     L+D + + G ++ A ++ +       + W  
Sbjct: 458 LSVTRQA-KWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNA 516

Query: 364 LLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLI 418
           ++     + +   G  A+   N +Q  +    +   L+ I AC+     EEG+     + 
Sbjct: 517 MIDGYGTNGH---GREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMK 573

Query: 419 KSNGIKTT 426
           ++ G++ T
Sbjct: 574 ENYGLEPT 581



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 134/271 (49%), Gaps = 6/271 (2%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA-NGVIEAARSVFDNMPERD 154
           L+ C  +K L++   L   +I++G+    +  T L+  +   N + EAAR VF+ +  + 
Sbjct: 51  LELCTSLKELHQILPL---IIKNGFYNEHLFQTKLISLFCKFNSITEAAR-VFEPVEHKL 106

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            V +++++  Y + S   +A++ YERMR ++V    +    LL        L  G  +H 
Sbjct: 107 DVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHG 166

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
           +    GF  +++   A+V++YAKC  ++ A+ +F RM +RD++SWN+++ GY  +G    
Sbjct: 167 MVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARR 226

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+    QM  AG  PDSIT + +L   +    +  G    H    R   +  +     ++
Sbjct: 227 AVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIG-RSIHGYAFRAGFEYMVNVATAML 285

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           D Y + G +  A  V    S  + V W T++
Sbjct: 286 DTYFKCGSVRSARLVFKGMSSRNVVSWNTMI 316


>gi|296089328|emb|CBI39100.3| unnamed protein product [Vitis vinifera]
          Length = 483

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 197/531 (37%), Positives = 291/531 (54%), Gaps = 77/531 (14%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           S + YA  +F+QIQNP    +N++IR  + S +P QA  +Y       L  PD  TF F 
Sbjct: 15  SLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGL-LPDNLTFPFL 73

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR-GYAANGVIEAARSVFDNMPERD 154
           +K+C ++  ++   + HG +I+ G+E+ V V  +L+  G+   G +E+AR +FD MPE++
Sbjct: 74  VKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMGFNKCGDVESARKLFDQMPEKN 133

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           LV+W+++IS Y Q +   +A++L++ ++ + V  +   +V                    
Sbjct: 134 LVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMV-------------------- 173

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              + G   ++ +G ALVDMYA+CG++D A  VF  + +RD LSW ++I G  +HG  + 
Sbjct: 174 --IKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSER 231

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           ++ +F  M+ AG  P  ITF  +L  CSH GL+EE          R+ LK  +K      
Sbjct: 232 SLKYFATMVEAGLTPRDITFTAVLSACSHGGLLEEA--------ERFVLKMPVK------ 277

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
                               P+ PV W  LLG+C+IH+N EIGE   K L+QL    +G 
Sbjct: 278 --------------------PNAPV-WGALLGACRIHKNAEIGERVGKILIQLLPQHSGY 316

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ IYA  K+ E V   R+++K+ G+K  PG S IE+  +VHKF + D SHP+ D I
Sbjct: 317 YVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKI 376

Query: 455 YRKLEEIMHRAKFIGYTKD--ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            R  EEI+ R +  GY  +  ++L  +     E  L +    HSEKLAIAFG+  +  GT
Sbjct: 377 ERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHR----HSEKLAIAFGMMRSEAGT 432

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +RIVKNLR            S  + R+LIVRDR R+HHFR GLCSC DYW
Sbjct: 433 PIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 483


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 197/538 (36%), Positives = 294/538 (54%), Gaps = 41/538 (7%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF-----TFTFT 95
           A+++F+++      +WN+++  F ++     A   +  M      R D F     T    
Sbjct: 178 ARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDM------RRDGFVGDRTTLLAL 231

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE---------AARSV 146
           L AC  V  L   +E+HG+V+R+G       S  +  G+  N +I+          AR +
Sbjct: 232 LSACGDVMDLKVGKEIHGYVVRNGE------SGRVCNGFLMNSIIDMYCNCESVSCARKL 285

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           F+ +  +D+VSWNS+IS Y +     +AL+L+ RM       D  T++ +L++C  + AL
Sbjct: 286 FEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISAL 345

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            +G  +     + G+V +V VG AL+ MYA CG+L  A  VF  M ++++ +   M+ G+
Sbjct: 346 RLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGF 405

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
           G+HGRG EAIS F +ML  G  PD   F  +L  CSH GLV+EG E F+ M   Y+++P 
Sbjct: 406 GIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPR 465

Query: 327 IKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
             HY CLVDL GRAG L++A  VI N     +  +W  LL +C++HRNV++  I+ + L 
Sbjct: 466 PTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLF 525

Query: 386 QLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDD 445
           +L       YV L+ IYA  +  E V   R L+    ++  P +S++E+   VH+F V D
Sbjct: 526 ELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGD 585

Query: 446 KSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGL 505
            SH  +D IY KL+++  + K  GY  D SLV       E+  EK    HSE+LA+AF L
Sbjct: 586 TSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLY--DVEEEIKEKMLWDHSERLALAFAL 643

Query: 506 ATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             T  GT++RI KNLR            S   +R++I+RD  R+HHFRDGLCSCG YW
Sbjct: 644 INTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 169/325 (52%), Gaps = 11/325 (3%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           +V   + YAQ +F+QI    +  WNS+IR +A + SP +A+F Y  ML     +PD FT+
Sbjct: 69  AVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFG-QKPDNFTY 127

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
            F LKAC  +      +++H  V+  G E  V V  +++  Y   G +EAAR VFD M  
Sbjct: 128 PFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLV 187

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           RDL SWN+++S + +      A +++  MR +    D  TL+ LLS+C  V  L +G  +
Sbjct: 188 RDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEI 247

Query: 213 HRIAC---EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
           H       E G V + ++ N+++DMY  C ++  A  +F  +R +DV+SWNS+I GY   
Sbjct: 248 HGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKC 307

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR---YNLKPG 326
           G   +A+  F +M++ G  PD +T + +L  C+    +  G      +V R    N+  G
Sbjct: 308 GDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVG 367

Query: 327 IKHYGCLVDLYGRAGKLEKALEVIN 351
                 L+ +Y   G L  A  V +
Sbjct: 368 TA----LIGMYANCGSLVCACRVFD 388



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 133/289 (46%), Gaps = 7/289 (2%)

Query: 82  ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG-YERCVVVSTNLMRGYAANGVI 140
           +S S  D+      L++    K+L +  +LH  V   G   R   ++T L   YA  G +
Sbjct: 15  SSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHM 74

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
             A+ +FD +  ++   WNS+I  Y   +    AL LY +M       D FT   +L +C
Sbjct: 75  PYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKAC 134

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
             +    MG  +H +    G  E VYVGN+++ MY K G++++A  VF RM  RD+ SWN
Sbjct: 135 GDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWN 194

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           +M+ G+  +G    A   F  M   GF  D  T L LL  C     ++ G E  H  V R
Sbjct: 195 TMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKE-IHGYVVR 253

Query: 321 YNLKPGIKHYGCL----VDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            N + G    G L    +D+Y     +  A ++       D V W +L+
Sbjct: 254 -NGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLI 301


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/510 (35%), Positives = 287/510 (56%), Gaps = 16/510 (3%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W+++I+  AQ+    +AI  +  M +  L + D + F   L AC  + A+N  +++H  
Sbjct: 234 SWSAMIKGLAQNGMEKEAIECFREMKIEGL-KMDQYPFGSVLPACGGLGAINDGRQIHAC 292

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           +IR+  +  + V + L+  Y     +  A++VFD M ++++VSW +++  Y Q     EA
Sbjct: 293 IIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEA 352

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           +K++  M+   +  D +TL   +S+CA++ +L  G   H  A   G +  + V N+LV +
Sbjct: 353 VKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTL 412

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y KCG++D +  +F+ M  RD +SW +M+  Y   GR  EAI  F +M+  G  PD +T 
Sbjct: 413 YGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTL 472

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
            G++  CS  GLVE+G  YF +M++ Y + P   HY C++DL+ R+G++E+A+  IN   
Sbjct: 473 TGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMP 532

Query: 355 -PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
              D + W TLL +C+   N+EIG+ A ++L++L+      Y LL++IYA     + VA+
Sbjct: 533 FRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQ 592

Query: 414 TRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD 473
            R+ +K   ++  PG SWI+   ++H F  DD+S P +D IY KLEE+  +    GY  D
Sbjct: 593 LRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPD 652

Query: 474 ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------ 521
            S   V     E    K    HSE+LAIAFGL   P G  +R+ KNLR            
Sbjct: 653 TSF--VHHDVEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHI 710

Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           S    R+++VRD VR+H F+DG CSCGD+W
Sbjct: 711 SSVTGREILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/437 (28%), Positives = 199/437 (45%), Gaps = 47/437 (10%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A S S  LS  +  F ++ +     WN LI  ++ S     A+  YN M+    S     
Sbjct: 78  AYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRV 137

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYE----------------------------- 121
           T    LK       ++  +++HG VI+ G+E                             
Sbjct: 138 TLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGL 197

Query: 122 --RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
             R  V+   LM G  A G+IE A  +F  M E+D VSW+++I    Q     EA++ + 
Sbjct: 198 DDRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNGMEKEAIECFR 256

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
            M+ E + +D +    +L +C  +GA+N G  +H         + +YVG+AL+DMY KC 
Sbjct: 257 EMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCK 316

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            L  A  VF RM++++V+SW +M+VGYG  GR  EA+  F  M  +G  PD  T    + 
Sbjct: 317 CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAIS 376

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY----GCLVDLYGRAGKLEKALEVINTSSP 355
            C++   +EEG ++    ++      G+ HY      LV LYG+ G ++ +  + N  + 
Sbjct: 377 ACANISSLEEGSQFHGKAIT-----AGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNV 431

Query: 356 SDPVLWRTLLGS-CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGV 411
            D V W  ++ +  +  R VE  ++  K +VQL     G   L   I AC++    E+G 
Sbjct: 432 RDEVSWTAMVSAYAQFGRAVEAIQLFDK-MVQLGLKPDG-VTLTGVISACSRAGLVEKGQ 489

Query: 412 ARTRKLIKSNGIKTTPG 428
                +I   GI  + G
Sbjct: 490 RYFELMINEYGIVPSNG 506



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 68/377 (18%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           ++  +K C  + A    + +HG +IR+       +  N++  YA       AR VFD +P
Sbjct: 6   YSAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIP 65

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFED-----VGLDGF--------------- 191
           + +L SWN+++  Y+++    E  + +E++   D     V ++G+               
Sbjct: 66  QPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNT 125

Query: 192 ------------TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK-- 237
                       TL+ +L   +  G +++G  +H    ++GF   + VG+ L+DMY+K  
Sbjct: 126 MMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVG 185

Query: 238 -----------------------------CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
                                        CG ++ A  +F  M K D +SW++MI G   
Sbjct: 186 CISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEK-DSVSWSAMIKGLAQ 244

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +G   EAI  F++M + G   D   F  +L  C   G + +G +  H  + R NL+  I 
Sbjct: 245 NGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQ-IHACIIRTNLQDHIY 303

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL-LGSCKIHRNVEIGEIAMKNLVQL 387
               L+D+Y +   L  A  V +     + V W  + +G  +  R  E  +I +   +Q 
Sbjct: 304 VGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLD--MQR 361

Query: 388 EAASAGDYVLLATIYAC 404
                  Y L   I AC
Sbjct: 362 SGIDPDHYTLGQAISAC 378


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 209/574 (36%), Positives = 306/574 (53%), Gaps = 61/574 (10%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQ-AWNSLIRAFAQSLSP---LQAIFYYNHMLMASLSR 86
           A+  S  + YA LL  +   P T   +N+ IR F+++  P   L ++  +  M + SL+ 
Sbjct: 31  ALDPSGDIDYALLLLLRTSTPPTVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLA- 89

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P+ FTFTF  + C    A +  ++ HG VI++ +E  V V  +++R Y+  G +  AR V
Sbjct: 90  PNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWV 149

Query: 147 FDNMPERDLVSWNSII-------------------------------SCYTQASFHLEAL 175
           FD   E D+VSWNS+I                               S Y Q     EAL
Sbjct: 150 FDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEAL 209

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG----FVESVYVGNAL 231
            L+  M+  D   +   LV +LS+C+ +GAL+ G ++H   C +G     V+S+ +  AL
Sbjct: 210 ALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVH---CYIGKKCVRVDSI-LSAAL 265

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           +DMYAKCG++D A   FS  RKRDV ++ + I G  ++G  +EA+  F+QM   G  PD 
Sbjct: 266 IDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDG 325

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
           ++++ +LC CSH G VE+G  YF  M   + ++P + HY C+VDL GRAG LE+A E   
Sbjct: 326 VSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEA-EKFV 384

Query: 352 TSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409
            S P  P  V+W  LLG+C+++ N E+G+     LV+ +    G Y+LL+ IYA +   E
Sbjct: 385 ASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGE 444

Query: 410 GVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIG 469
              + RK ++   +   PG S IE+   VH+F   D+SH   + IY   EEI+   K  G
Sbjct: 445 DAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFG 504

Query: 470 YTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-------- 521
           Y   E   AV     E+  E    +HSEKLA+AFG   T  G++LRIVKN+R        
Sbjct: 505 YR--EETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSGSTLRIVKNIRICSDCHYA 562

Query: 522 ----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               S  + R + +RDR  +HHF +GLCSC DYW
Sbjct: 563 IKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 195/544 (35%), Positives = 303/544 (55%), Gaps = 24/544 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+  YA +   +L     +F  I+     +WN+LI  F ++  P +A+  +  M   
Sbjct: 341 GPALMELYADT--GNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQ 398

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            L  PD+++   +L AC  +       ++HG++I++G      V   L+  YA  G + +
Sbjct: 399 GL-MPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFN-DFVQNALIDMYAKCGFVHS 456

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  +F+ + E+ LV+WNS+I  ++Q  + +EA+ L+++M    V +D  T + ++ +C+H
Sbjct: 457 ANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSH 516

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +G L  G ++H      G  +  Y+  AL DMY+KCG L  A  VF RM +R ++SW+ M
Sbjct: 517 LGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVM 576

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I GYG+HG+ +  IS F QML +G  P+ ITF+ +L  CSH G VEEG  YF+ M S + 
Sbjct: 577 IAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM-SEFG 635

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           ++P   H+ C+VDL  RAG L  A ++I +   P++  +W  LL  C+IH+ ++I +   
Sbjct: 636 VEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIE 695

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           KNL+ ++ A  G Y LL+ IYA     +   + R ++KS G++  PG+S IEI  ++++F
Sbjct: 696 KNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRF 755

Query: 442 VVDDKSHPDADMIYRKLEEI--MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
              D SH     IYR LE    +  A+      D S+V  S  + E+    +   HSEKL
Sbjct: 756 GPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKEN----NVVSHSEKL 811

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           AIAFG+  T  GT+LRI KNLR            S    R++I+RD  R+H FR+G CSC
Sbjct: 812 AIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSC 871

Query: 548 GDYW 551
            DYW
Sbjct: 872 NDYW 875



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 172/365 (47%), Gaps = 10/365 (2%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLNSYA-ISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           L  H    GL++    H      L+ SYA I +  S   ++ +F+    P +  W  LI+
Sbjct: 20  LHAHLFITGLHR----HPPASTKLIESYAQIGIFES---SKRVFDTFPKPDSFMWGVLIK 72

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
            +       +A+  Y+ M+    ++   F F   LKAC     L+   ++HG VI+ G+E
Sbjct: 73  CYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFE 132

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
              VV T+L+  Y     ++ A   FD MP RD+V+W+SI+  + Q     E L ++ +M
Sbjct: 133 SDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQM 192

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
             E V  D  T++ +  +C+ +G+L +G  +H          +  + N+L+ MY K G+L
Sbjct: 193 ISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDL 252

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
            SA  +F  +  R    W  MI  Y   G   EA++ F +M      P+ +T +G+LC C
Sbjct: 253 YSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCAC 312

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYG-CLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           +  G V+EG    H  V R  + P +   G  L++LY   G L    +V  T      + 
Sbjct: 313 ARLGRVKEG-RSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILS 371

Query: 361 WRTLL 365
           W TL+
Sbjct: 372 WNTLI 376



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 180/378 (47%), Gaps = 19/378 (5%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           S L  A   F+ +      AW+S++  F Q+    + +  ++ M+  ++  PD+ T    
Sbjct: 149 SCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAV-EPDSVTMLSV 207

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
            +AC  + +L   + +HG+V+R   E    ++ +L+  Y   G + +A  +F+N+P R  
Sbjct: 208 TEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMT 267

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
             W  +ISCY Q+    EAL ++ +M+   +  +  T+V +L +CA +G +  G  +H  
Sbjct: 268 APWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVH-- 325

Query: 216 ACEMGFV-------ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
               GFV       E  ++G AL+++YA  GNL     VF  ++++ +LSWN++I  +  
Sbjct: 326 ----GFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTR 381

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +G+ +EA+  F QM   G  PDS +    L  C      + G +    ++   N    ++
Sbjct: 382 NGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQ 441

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRN-VEIGEIAMKNLVQL 387
           +   L+D+Y + G +  A ++         V W +++  C   +N   +  I + + + +
Sbjct: 442 N--ALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMI--CGFSQNGYSVEAITLFDQMYM 497

Query: 388 EAASAGDYVLLATIYACT 405
                     L+ I AC+
Sbjct: 498 NCVKMDKLTFLSVIQACS 515



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 116/238 (48%), Gaps = 2/238 (0%)

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           +LH  +  +G  R    ST L+  YA  G+ E+++ VFD  P+ D   W  +I CY    
Sbjct: 19  QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 78

Query: 170 FHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
           F  EA+ LY  M ++D   +  F    +L +C+  G L++G  +H    + GF     V 
Sbjct: 79  FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVE 138

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
            +L+ MY +   LD A   F  M  RDV++W+S+++ +  +G+  E +  F QM+     
Sbjct: 139 TSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVE 198

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
           PDS+T L +   CS  G +  G    H  V R  ++        L+ +YG+ G L  A
Sbjct: 199 PDSVTMLSVTEACSELGSLRLG-RSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSA 255


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 193/529 (36%), Positives = 291/529 (55%), Gaps = 19/529 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+S A+++F+ + +    +WNS+I  + QS     A+  +  ML   + +P   T    L
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGV-QPTNVTVMGAL 239

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  +  L + + +H  V +   +  V V  +L+  Y+    ++ A  +F N+  + LV
Sbjct: 240 HACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I  Y Q     EAL  +  M+  ++  D FT+V ++ + A +       ++H + 
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                 ++V+V  ALVDMYAKCG + +A  +F  M  R V++WN+MI GYG HG G  ++
Sbjct: 360 IRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSV 419

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             FK+M      P+ ITFL  L  CSH GLVEEG+ +F  M   Y ++P + HYG +VDL
Sbjct: 420 ELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDL 479

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG+L +A + I    P  P   ++  +LG+CKIH+NV++GE A   + +L     G 
Sbjct: 480 LGRAGRLNQAWDFIQ-KMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGY 538

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           +VLLA IYA       VA+ R +++ +G++ TPG S +EIGN+VH F     SHP +  I
Sbjct: 539 HVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKI 598

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y  LE ++   +  GY  D + +       +D   +    HSEKLAIAFGL  T  GT +
Sbjct: 599 YSYLETLVDEIRAAGYVPDTNSIH---DVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPI 655

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            I KNLR            S+   R++IVRD  R+H F+DG+CSCGDYW
Sbjct: 656 HIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 162/307 (52%), Gaps = 2/307 (0%)

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           +++ +A+S S   A+ +++ M   S+ RP  + FT+ LK C     L + +E+HG VI S
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSV-RPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITS 59

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G+   +   T ++  YA    I  A ++FD MPERDLV WN++IS Y Q  F   AL L 
Sbjct: 60  GFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLV 119

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
            RM  E    D  T+V +L + A    L +G+ +H      GF   V V  ALVDMY+KC
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC 179

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G++  A  +F  M  R V+SWNSMI GY   G  + A+  F++ML  G  P ++T +G L
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C+  G +E G ++ H +V +  L   +     L+ +Y +  +++ A ++         
Sbjct: 240 HACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTL 298

Query: 359 VLWRTLL 365
           V W  ++
Sbjct: 299 VSWNAMI 305



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 214/432 (49%), Gaps = 30/432 (6%)

Query: 16  RQAHEIHGEWLLNSYAISVSS------------SLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           ++  EIHG  + + ++ ++ +             ++ A  +F+++       WN++I  +
Sbjct: 47  KRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGY 106

Query: 64  AQSLSPLQAIFYYNHMLMASLS----RPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           AQ+     A+     ML+  +S    RPD+ T    L A    + L     +HG+V+R+G
Sbjct: 107 AQNGFAKVAL-----MLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAG 161

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
           +E  V VST L+  Y+  G +  AR +FD M  R +VSWNS+I  Y Q+     A+ +++
Sbjct: 162 FESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQ 221

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           +M  E V     T++  L +CA +G L  G F+H++  ++     V V N+L+ MY+KC 
Sbjct: 222 KMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCK 281

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            +D A  +F  +R + ++SWN+MI+GY  +G  +EA++ F +M      PDS T + ++ 
Sbjct: 282 RVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIP 341

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
             +   +  +  ++ H +V R  L   +     LVD+Y + G +  A ++ +  +    +
Sbjct: 342 ALAELSIPRQA-KWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVI 400

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACTKD---EEGVART 414
            W  ++     H    +G+ +++   +++  +    D   L  + AC+     EEG+   
Sbjct: 401 TWNAMIDGYGTH---GLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFF 457

Query: 415 RKLIKSNGIKTT 426
             + K  GI+ T
Sbjct: 458 ESMKKDYGIEPT 469


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 188/524 (35%), Positives = 291/524 (55%), Gaps = 16/524 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF  + +  +  W +++    Q+   L+A+  +  M    +   D +TF   L AC 
Sbjct: 231 AKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVG-IDQYTFGSILTACG 289

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + A  + +++H ++ R+ YE  V V + L+  Y+    I  A +VF  M  R+++SW +
Sbjct: 290 ALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTA 349

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I  Y Q +   EA++ +  M+ + +  D FTL  ++SSCA++ +L  G   H +A   G
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            +  + V NALV +Y KCG+++ A  +F  M   D +SW +++ GY   G+  E I  F+
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFE 469

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML+ G  PD +TF+G+L  CS  GLVE+G +YF  M   +++ P   HY C++DLY R+
Sbjct: 470 KMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRS 529

Query: 341 GKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+ ++A E I     S D   W TLL SC++  N+EIG+ A +NL++ +  +   YVLL 
Sbjct: 530 GRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLC 589

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
           +++A       VA  R+ ++   +K  PG SWI+  N+VH F  DD+SHP +  IY KLE
Sbjct: 590 SMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLE 649

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
            +  +    GY  D S V    + ++     S  +HSEKLAIAFGL   P    +RIVKN
Sbjct: 650 WLNSKMAEEGYKPDVSSVLHDVADADKVHMIS--HHSEKLAIAFGLIFVPQEMPIRIVKN 707

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S    RD++VRD VR+H F DG CSCGD+W
Sbjct: 708 LRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 185/389 (47%), Gaps = 39/389 (10%)

Query: 36  SSLSYAQL------LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
           S+L++++L      LF  +      ++N+LI  F+ + SP +++  Y  +L     RP  
Sbjct: 87  SALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTR 146

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
            T +  +     +        +H  V+R G+     V + L+  YA  G+I  AR VF  
Sbjct: 147 ITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQE 206

Query: 150 MP-------------------------------ERDLVSWNSIISCYTQASFHLEALKLY 178
           M                                +RD ++W ++++  TQ    LEAL ++
Sbjct: 207 MEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVF 266

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
            RMR E VG+D +T   +L++C  + A   G  +H       + ++V+VG+ALVDMY+KC
Sbjct: 267 RRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKC 326

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
            ++  A  VF RM  R+++SW +MIVGYG +   +EA+  F +M M G  PD  T   ++
Sbjct: 327 RSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVI 386

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C++   +EEG + FH +     L   I     LV LYG+ G +E A  + +  S  D 
Sbjct: 387 SSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445

Query: 359 VLWRTLL-GSCKIHRNVEIGEIAMKNLVQ 386
           V W  L+ G  +  +  E  ++  K LV 
Sbjct: 446 VSWTALVTGYAQFGKAKETIDLFEKMLVN 474



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 143/358 (39%), Gaps = 38/358 (10%)

Query: 79  MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
           +L   L  P TF     L A  +   L + +     V     +  +     L+   A + 
Sbjct: 38  ILKTFLQAPPTFLLNHLLTAYAKSGRLARARR----VFDEMPDPNLFTRNALLSALAHSR 93

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLL 197
           ++     +F +MPERD VS+N++I+ ++       +++LY  + R E V     TL  ++
Sbjct: 94  LVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMI 153

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK-------------------- 237
              + +    +G  +H     +GF    +VG+ LVDMYAK                    
Sbjct: 154 MVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVV 213

Query: 238 -----------CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
                      C  ++ A  +F  M  RD ++W +M+ G   +G   EA+  F++M   G
Sbjct: 214 MYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEG 273

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
              D  TF  +L  C      EEG +  H  ++R   +  +     LVD+Y +   +  A
Sbjct: 274 VGIDQYTFGSILTACGALAASEEGKQ-IHAYITRTWYEDNVFVGSALVDMYSKCRSIRLA 332

Query: 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
             V    +  + + W  ++     +   E    A   + Q++     D+ L + I +C
Sbjct: 333 EAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEM-QMDGIKPDDFTLGSVISSC 389



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 15/135 (11%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A  LF+++      +W +L+  +AQ     + I  +  ML+  L +PD  TF   L
Sbjct: 429 SIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGL-KPDGVTFIGVL 487

Query: 97  KACERVKALNK-------CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
            AC R   + K        Q+ H  V    +  C++   +L   Y+ +G  + A      
Sbjct: 488 SACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMI---DL---YSRSGRFKEAEEFIKQ 541

Query: 150 MPER-DLVSWNSIIS 163
           MP   D   W +++S
Sbjct: 542 MPHSPDAFGWATLLS 556


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/599 (33%), Positives = 309/599 (51%), Gaps = 61/599 (10%)

Query: 11  GLNKARQAHEIHGEWLLNSYAISVSS---------SLSYAQLLFNQIQNPQTQAWNSLIR 61
            LN+ R+ H    E  L +  I  ++         S+  A+ +F+++      +W+++I 
Sbjct: 273 ALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIA 332

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSR----PDTFTFTFTLKACERVKALNKCQELHGFVIR 117
            +AQS    +        L+  + R    P+  TF   L+AC    AL + +++H  + +
Sbjct: 333 GYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSK 392

Query: 118 SGYE--------------RC-----------------VVVSTNLMRGYAANGVIEAARSV 146
            G+E              +C                 VV  T+ +  Y   G + +A  V
Sbjct: 393 VGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKV 452

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           F  MP R++VSWN +I+ Y Q    ++  +L   M+ E    D  T++ +L +C  +  L
Sbjct: 453 FSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGL 512

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
             G  +H  A ++G      V  +L+ MY+KCG +  A  VF +M  RD ++WN+M+ GY
Sbjct: 513 ERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGY 572

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
           G HG G EA+  FK+ML     P+ IT   ++  CS  GLV+EG E F MM   + + P 
Sbjct: 573 GQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPR 632

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNL 384
            +HYGC+VDL GRAG+L++A E I  S P +P   +W  LLG+CK H NV++ E A  ++
Sbjct: 633 KQHYGCMVDLLGRAGRLQEAEEFIQ-SMPCEPDISVWHALLGACKSHNNVQLAERAAHHI 691

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           ++LE + A  Y+ L+ IYA     +   + R+++   G+K   G S IEI  ++H FV +
Sbjct: 692 LELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAE 751

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D +HP+ D I+ +LE +    K  GYT D   V       +   EK+  +HSEKLAIA+G
Sbjct: 752 DCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQK--EKALCHHSEKLAIAYG 809

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L  TP GT +RI+KNLR            S    R+++ RD  R+H+F +G CSCGD+W
Sbjct: 810 LLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 174/348 (50%), Gaps = 9/348 (2%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+N Y  S    ++ A+ +F ++       W+S+I A+A +  P +A   +  M  A
Sbjct: 94  GNSLINFY--SKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDA 151

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
           ++  P+  TF   LKAC     L K +++H  V   G E  V V+T L+  Y+  G I  
Sbjct: 152 NIE-PNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISV 210

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VF  M ER++VSW +II    Q     EA +LYE+M    +  +  T V LL+SC  
Sbjct: 211 ACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNT 270

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
             ALN G  +H    E G    + V NAL+ MY KC ++  A  +F RM KRDV+SW++M
Sbjct: 271 PEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAM 330

Query: 263 IVGYGVHGRG-----DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           I GY   G       DE     ++M   G  P+ +TF+ +L  C+  G +E+G +  H  
Sbjct: 331 IAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQ-IHAE 389

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +S+   +        + ++Y + G + +A +V +  +  + V W + L
Sbjct: 390 LSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFL 437



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 140/279 (50%), Gaps = 1/279 (0%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           ++ T+   ++ C + +     + +H  +   G E  + +  +L+  Y+    + +A  VF
Sbjct: 55  NSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVF 114

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
             M  RD+V+W+S+I+ Y   +   +A   +ERM   ++  +  T + +L +C +   L 
Sbjct: 115 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILE 174

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  +H I   MG    V V  AL+ MY+KCG +  A  VF +M +R+V+SW ++I    
Sbjct: 175 KGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANA 234

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            H + +EA   ++QML AG  P+++TF+ LL  C+    +  G    H  +S   L+  +
Sbjct: 235 QHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRG-RRIHSHISERGLETDM 293

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
                L+ +Y +   +++A E+ +  S  D + W  ++ 
Sbjct: 294 IVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIA 332



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 129/257 (50%), Gaps = 8/257 (3%)

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           EA++L   ++   + ++  T  C++  CA       G  +H+   E+G    +Y+GN+L+
Sbjct: 39  EAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLI 98

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           + Y+K  ++ SA  VF RM  RDV++W+SMI  Y  +    +A   F++M  A   P+ I
Sbjct: 99  NFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRI 158

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TFL +L  C++  ++E+G    H +V    ++  +     L+ +Y + G++  A EV + 
Sbjct: 159 TFLSILKACNNYSILEKG-RKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHK 217

Query: 353 SSPSDPVLWRTLLGSCKIHRNV-EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
            +  + V W  ++ +   HR + E  E+  +    L+A  + + V   ++       E +
Sbjct: 218 MTERNVVSWTAIIQANAQHRKLNEAFELYEQ---MLQAGISPNAVTFVSLLNSCNTPEAL 274

Query: 412 ARTRKL---IKSNGIKT 425
            R R++   I   G++T
Sbjct: 275 NRGRRIHSHISERGLET 291


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 197/539 (36%), Positives = 297/539 (55%), Gaps = 19/539 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ Y  S S +L+ A  +F  +      +W S+I  +A+      ++  ++ M    +S
Sbjct: 292 LLDMY--SKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGIS 349

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD FT T  L AC     L   +++H ++  +  +  + VS  LM  YA  G +  A S
Sbjct: 350 -PDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHS 408

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF  M  +D+VSWN++I  Y++ S   EAL L+  M++ +   +  T+ C+L +CA + A
Sbjct: 409 VFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQY-NSKPNSITMACILPACASLAA 467

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H      GF    +V NALVDMY KCG L  A  +F  + ++D++SW  MI G
Sbjct: 468 LERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAG 527

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           YG+HG G EAI+ F +M  +G  PD ++F+ +L  CSH GL++EG  +F+MM +   ++P
Sbjct: 528 YGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEP 587

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
             +HY C+VDL  RAG L KA + I       D  +W  LL  C+I+ +V++ E   +++
Sbjct: 588 KSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHV 647

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
            +LE  + G YVLLA IYA  +  E V + R+ I   G++  PG SWIEI  +VH FV  
Sbjct: 648 FELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTG 707

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D SHP A+ I   L++   R K  G+        +    +E   E +   HSEK+A+AFG
Sbjct: 708 DSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEK--EMALCGHSEKIAMAFG 765

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + + P G ++R+ KNLR            S    RD+I+RD  R+HHF+DG CSC  +W
Sbjct: 766 ILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 187/366 (51%), Gaps = 6/366 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+++ +    +WNS+I  +  +    + +  +  ML+  ++  D  T    +  C 
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN-TDLATMVSVVAGCS 262

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               L   + LHG+ I++ + + + ++  L+  Y+ +G + +A  VF+ M ER +VSW S
Sbjct: 263 NTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTS 322

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+ Y +      +++L+  M  E +  D FT+  +L +CA  G L  G  +H    E  
Sbjct: 323 MIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENK 382

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               ++V NAL+DMYAKCG++  A  VFS M+ +D++SWN+MI GY  +   +EA++ F 
Sbjct: 383 MQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFV 442

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           +M      P+SIT   +L  C+    +E G E + H++ + ++L   + +   LVD+Y +
Sbjct: 443 EM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN--ALVDMYLK 499

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            G L  A  + +     D V W  ++    +H       IA  N ++       +   ++
Sbjct: 500 CGALGLARLLFDMIPEKDLVSWTVMIAGYGMH-GYGSEAIAAFNEMRNSGIEPDEVSFIS 558

Query: 400 TIYACT 405
            +YAC+
Sbjct: 559 ILYACS 564



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 143/278 (51%), Gaps = 4/278 (1%)

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           +E+AR +FD + +RD++SWNS+IS Y       + L L+E+M    +  D  T+V +++ 
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAG 260

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           C++ G L +G  LH  A +  F + + + N L+DMY+K GNL+SA  VF  M +R V+SW
Sbjct: 261 CSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 320

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
            SMI GY   G  D ++  F +M   G  PD  T   +L  C+  GL+E G +  H  + 
Sbjct: 321 TSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKD-VHNYIK 379

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEI 379
              ++  +     L+D+Y + G +  A  V +     D V W T++G    +    +   
Sbjct: 380 ENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGG---YSKNSLPNE 436

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
           A+   V+++  S  + + +A I         + R +++
Sbjct: 437 ALNLFVEMQYNSKPNSITMACILPACASLAALERGQEI 474


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/558 (35%), Positives = 308/558 (55%), Gaps = 35/558 (6%)

Query: 15  ARQAHEIHGEWLLNSYAISVS-----SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSP 69
           ARQ  +   E  + SY I ++     + +  A+L F+Q+    T +WN++I  F+Q+   
Sbjct: 56  ARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMM 115

Query: 70  LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN 129
            QA       L   +   ++ ++   +        L+  ++L          R VV  T 
Sbjct: 116 DQA-----RELFLVMPVRNSVSWNAMISGYVESGDLDLAKQL----FEVAPVRSVVAWTA 166

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           ++ G+   G IE A   F+ MP ++LV+WN++I+ Y +       LKL++RM       +
Sbjct: 167 MITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPN 226

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
             +L  +L  C+++ AL +G  +H++ C+     ++  G +L+ MY KCG+L+ A+ +F 
Sbjct: 227 PSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFL 286

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            M ++DV++WN+MI GY  HG G++A+  F +M   G  PD ITF+ +L  C+H G V+ 
Sbjct: 287 VMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDL 346

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGS 367
           G+EYF+ MV  Y ++    HY C+VDL GR GKL +A+++I    P  P   ++ TLLG+
Sbjct: 347 GIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIK-KMPFKPHSAIFGTLLGA 405

Query: 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTP 427
           C+IH+N+E+ E A KNL+ L+  SA  YV LA +YA     + VA  R+ +K N +  TP
Sbjct: 406 CRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTP 465

Query: 428 GWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD--ESLVAVSGSSSE 485
           G+SWIE+ + VH+F   D+ HP+   I+ KL E+  + +  GY  D   +L  V     +
Sbjct: 466 GYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKK 525

Query: 486 DFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRD 533
             L +    HSEKLAIA+GL   P GT +R+ KNLR            S    R +IVRD
Sbjct: 526 QILLR----HSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRD 581

Query: 534 RVRYHHFRDGLCSCGDYW 551
             R+HHFR G CSCGDYW
Sbjct: 582 TTRFHHFRQGECSCGDYW 599



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/364 (19%), Positives = 152/364 (41%), Gaps = 64/364 (17%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE-ALKLYERMR 182
           V+ S  ++  +  +G + +A  VF++M  +  V+WNS+++ Y+     ++ A +L++R+ 
Sbjct: 5   VISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIP 64

Query: 183 FEDVGLDGFTLVC---------------------------LLSSCAHVGALNMGIFLHRI 215
             D+      L C                           ++S  +  G ++    L  +
Sbjct: 65  EPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLV 124

Query: 216 ----------ACEMGFVE-----------------SVYVGNALVDMYAKCGNLDSAFCVF 248
                     A   G+VE                 SV    A++  + K G ++ A   F
Sbjct: 125 MPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYF 184

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
             M  +++++WN+MI GY  + + +  +  FK+M+ +GF P+  +   +L GCS+   ++
Sbjct: 185 EEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALK 244

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            G +  H ++ +  +   I     L+ +Y + G LE A ++       D V W  ++   
Sbjct: 245 LGKQ-VHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGY 303

Query: 369 KIHRNVEIGEIAMKNLVQL-EAASAGDYV-LLATIYACTKD---EEGVARTRKLIKSNGI 423
             H     GE A+    ++ +     D++  +A + AC      + G+     +++  G+
Sbjct: 304 AQH---GAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGV 360

Query: 424 KTTP 427
           +  P
Sbjct: 361 EAKP 364



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 110/268 (41%), Gaps = 67/268 (25%)

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG----------- 272
           +V   N ++  + + G+L+SA  VF  M  +  ++WNSM+ GY  + RG           
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYS-NRRGKIKVARQLFDR 62

Query: 273 ----------------------DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
                                 + A  FF QM +     D+ ++  ++ G S  G++++ 
Sbjct: 63  IPEPDIFSYNIMLACYLHNADVESARLFFDQMPVK----DTASWNTMISGFSQNGMMDQA 118

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI 370
            E F +M  R ++      +  ++  Y  +G L+ A ++   +     V W  ++     
Sbjct: 119 RELFLVMPVRNSVS-----WNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMK 173

Query: 371 HRNVEIG-----EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
              +E+      E+ MKNLV   A  AG       I  C + E G+   +++++S G + 
Sbjct: 174 FGKIELAEKYFEEMPMKNLVTWNAMIAG------YIENC-QAENGLKLFKRMVES-GFRP 225

Query: 426 TP-----------GWSWIEIGNQVHKFV 442
            P             S +++G QVH+ +
Sbjct: 226 NPSSLSSVLLGCSNLSALKLGKQVHQLI 253


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/599 (33%), Positives = 310/599 (51%), Gaps = 61/599 (10%)

Query: 11  GLNKARQAHEIHGEWLLNSYAISVSSSLSY---------AQLLFNQIQNPQTQAWNSLIR 61
            LN+ R+ H    E  L +  +  ++ ++          A+  F+++      +W+++I 
Sbjct: 295 ALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIA 354

Query: 62  AFAQS----LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
            +AQS       L  +F     +      P+  TF   LKAC    AL + +++H  + +
Sbjct: 355 GYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISK 414

Query: 118 SGYE--------------RC-----------------VVVSTNLMRGYAANGVIEAARSV 146
            G+E              +C                 VV   +L+  Y   G + +A  V
Sbjct: 415 VGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKV 474

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           F  M  R++VSWN +I+ Y Q+    +  +L   M+ E    D  T++ +L +C  + AL
Sbjct: 475 FSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSAL 534

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
             G  +H  A ++G      V  +L+ MY+KCG +  A  VF ++  RD ++WN+M+ GY
Sbjct: 535 ERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGY 594

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
           G HG G EA+  FK+ML     P+ ITF  ++  C   GLV+EG E F +M   + +KPG
Sbjct: 595 GQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPG 654

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNL 384
            +HYGC+VDL GRAG+L++A E I    P +P   +W  LLG+CK H NV++ E A  ++
Sbjct: 655 KQHYGCMVDLLGRAGRLQEAEEFIQ-RMPCEPDISVWHALLGACKSHDNVQLAEWAAHHI 713

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           ++LE ++A  YV L+ IYA     +   + RK++   G+K   G S IEI  ++H FV +
Sbjct: 714 LRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAE 773

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D +HP+ D I+ +LE +    K  GYT D   V       E   E++  +HSEKLAIA+G
Sbjct: 774 DCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVL--HDVDEVQKERALCHHSEKLAIAYG 831

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L  TP GT +RI+KNLR            S    R+++ RD  R+H+F++G CSCGD+W
Sbjct: 832 LLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 172/348 (49%), Gaps = 9/348 (2%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+N Y  S    ++  + +F ++       W+S+I A+A +  P +A   +  M  A
Sbjct: 116 GNSLINFY--SKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDA 173

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
           ++  P+  TF   LKAC     L K +E+H  V  SG E  V V+T L+  Y+  G I  
Sbjct: 174 NIE-PNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISL 232

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  +F  M ER++VSW +II    Q     EA +LYE+M    +  +  T V LL+SC  
Sbjct: 233 ACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNT 292

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
             ALN G  +H    E G    V V NAL+ MY KC  +  A   F RM KRDV+SW++M
Sbjct: 293 PEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAM 352

Query: 263 IVGYGVHGRG-----DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           I GY   G       DE     ++M   G  P+ +TF+ +L  CS  G +E+G +  H  
Sbjct: 353 IAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQ-IHAE 411

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +S+   +        + ++Y + G + +A +V +     + V W +LL
Sbjct: 412 ISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLL 459



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 138/279 (49%), Gaps = 1/279 (0%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           ++ T+   ++ C +++     + +H  +   G    + +  +L+  Y+  G + +   VF
Sbjct: 77  NSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVF 136

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
             M  RD+V+W+S+I+ Y   +   +A   +ERM+  ++  +  T + +L +C +   L 
Sbjct: 137 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLE 196

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
               +H +    G    V V  AL+ MY+KCG +  A  +F +M++R+V+SW ++I    
Sbjct: 197 KAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANA 256

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            H + +EA   +++ML AG  P+++TF+ LL  C+    +  G    H  +S   L+  +
Sbjct: 257 QHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRG-RRIHSHISERGLETDV 315

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
                L+ +Y +   ++ A E  +  S  D + W  ++ 
Sbjct: 316 VVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIA 354



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 8/257 (3%)

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           EA++L   ++   + ++  T  C++  CA +     G  +H+   E+G    +Y+GN+L+
Sbjct: 61  EAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLI 120

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           + Y+K G++ S   VF RM  RDV++W+SMI  Y  +    +A   F++M  A   P+ I
Sbjct: 121 NFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRI 180

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TFL +L  C++  ++E+  E  H +V    ++  +     L+ +Y + G++  A E+   
Sbjct: 181 TFLSILKACNNYSMLEKARE-IHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQK 239

Query: 353 SSPSDPVLWRTLLGSCKIHRNV-EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
               + V W  ++ +   HR + E  E+  K    L+A  + + V   ++       E +
Sbjct: 240 MKERNVVSWTAIIQANAQHRKLNEAFELYEK---MLQAGISPNAVTFVSLLNSCNTPEAL 296

Query: 412 ARTRKL---IKSNGIKT 425
            R R++   I   G++T
Sbjct: 297 NRGRRIHSHISERGLET 313


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/442 (41%), Positives = 263/442 (59%), Gaps = 16/442 (3%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           VV  T ++  YA  G ++ AR +FD MP +D + WN++I  YTQ     EAL+L+  M  
Sbjct: 196 VVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLR 255

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLD 242
             V  D   ++  LS+ A +G    G +LH        V+ +  VG AL+DMY KCG+L+
Sbjct: 256 SGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLE 315

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A  VF+ +  +D++ WN+MI GY +HG   +A+  F Q+   G  P  ITF+GLL  CS
Sbjct: 316 DAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACS 375

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLW 361
           H GLV+EG ++F  M   Y + P I+HYGC+VDL GRAG +E+A  ++ + +   D V+W
Sbjct: 376 HSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMW 435

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
            +LL +C++H+N+ +G+     LV    A++G Y+LL+ IYA   + E VAR R ++K++
Sbjct: 436 VSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKAS 495

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
           GI+  PG S IE+G +V++FV  D SHP  D IY  LE++    K  G+     LV    
Sbjct: 496 GIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVL--H 553

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIA------------YSRDL 529
              E   EK+ A HSEKLA+AFGL +T  G +++IVKNLR+ A              R +
Sbjct: 554 DLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKI 613

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           + RDR R+HHF DG C+CGDYW
Sbjct: 614 VFRDRNRFHHFVDGSCTCGDYW 635



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 127/303 (41%), Gaps = 44/303 (14%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L +  ELH   +R+G +    V   L R YAA+  ++   ++    P+   V + S I  
Sbjct: 48  LRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHA 107

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
           ++    HL AL L   M    +     TL   L +C     L +G  LH  A ++     
Sbjct: 108 HSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACH---GLALGRALHAYAFKLALAGD 164

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSR-------------------------------MRK 253
            YV  AL+ MYA+ G+ D+A  +F                                 M  
Sbjct: 165 SYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPS 224

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           +D + WN+MI GY  HGR +EA+  F+ ML +G  PD +  +  L   +  G  E G  +
Sbjct: 225 KDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESG-RW 283

Query: 314 FHMMVS-----RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            H  V      + N + G      L+D+Y + G LE A+ V N+    D V+W  ++   
Sbjct: 284 LHSYVKNSRRVQLNARVGT----ALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGY 339

Query: 369 KIH 371
            +H
Sbjct: 340 AMH 342


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/442 (41%), Positives = 263/442 (59%), Gaps = 16/442 (3%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           VV  T ++  YA  G ++ AR +FD MP +D + WN++I  YTQ     EAL+L+  M  
Sbjct: 195 VVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLR 254

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLD 242
             V  D   ++  LS+ A +G    G +LH        V+ +  VG AL+DMY KCG+L+
Sbjct: 255 SGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLE 314

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A  VF+ +  +D++ WN+MI GY +HG   +A+  F Q+   G  P  ITF+GLL  CS
Sbjct: 315 DAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACS 374

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLW 361
           H GLV+EG ++F  M   Y + P I+HYGC+VDL GRAG +E+A  ++ + +   D V+W
Sbjct: 375 HSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMW 434

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
            +LL +C++H+N+ +G+     LV    A++G Y+LL+ IYA   + E VAR R ++K++
Sbjct: 435 VSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKAS 494

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
           GI+  PG S IE+G +V++FV  D SHP  D IY  LE++    K  G+     LV    
Sbjct: 495 GIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVL--H 552

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIA------------YSRDL 529
              E   EK+ A HSEKLA+AFGL +T  G +++IVKNLR+ A              R +
Sbjct: 553 DLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKI 612

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           + RDR R+HHF DG C+CGDYW
Sbjct: 613 VFRDRNRFHHFVDGSCTCGDYW 634



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 127/303 (41%), Gaps = 44/303 (14%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L +  ELH   +R+G +    V   L R YAA+  ++   ++    P+   V + S I  
Sbjct: 47  LRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHA 106

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
           ++    HL AL L   M    +     TL   L +C     L +G  LH  A ++     
Sbjct: 107 HSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACH---GLALGRALHAYAFKLALAGD 163

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSR-------------------------------MRK 253
            YV  AL+ MYA+ G+ D+A  +F                                 M  
Sbjct: 164 SYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPS 223

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           +D + WN+MI GY  HGR +EA+  F+ ML +G  PD +  +  L   +  G  E G  +
Sbjct: 224 KDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESG-RW 282

Query: 314 FHMMVS-----RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            H  V      + N + G      L+D+Y + G LE A+ V N+    D V+W  ++   
Sbjct: 283 LHSYVKNSRRVQLNARVGT----ALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGY 338

Query: 369 KIH 371
            +H
Sbjct: 339 AMH 341


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 195/533 (36%), Positives = 296/533 (55%), Gaps = 25/533 (4%)

Query: 39  SYAQLLFNQIQ----NPQTQA--WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S +QL F+  +    +PQ  A  W+S+I  FAQ+  P  ++ +   M+  SL RPD    
Sbjct: 61  SKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSL-RPDDHVL 119

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
               K+C  +   +  + +H   +++GY+  V V ++L+  YA  G I  AR +FD MP 
Sbjct: 120 PSATKSCGILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPL 179

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           R++V+W+ ++  Y Q   + EAL L++   FE++ ++ ++   ++S CA+   L +G  +
Sbjct: 180 RNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQI 239

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
             +  +  F  S +VG++LV +Y+KCG+L+ A+ VF  +  R++  WN+M+     H   
Sbjct: 240 QGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHT 299

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            + I  FK+M ++G  P+ ITFL +L  CSH GLV+EG  YF +M     ++P  KHY  
Sbjct: 300 QKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKYYFDLM-KESRIEPTDKHYAS 358

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           LVD+ GRAGKLE+ALE++ T+ P DP   +W  LL SC IH+N E+   A   + +L   
Sbjct: 359 LVDMLGRAGKLEEALEIV-TNMPIDPTESVWGALLTSCTIHKNTELAAFAADKVFELGPV 417

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           S+G ++ L+  YA     E  A+ RKL++  G K   G SW+E  N+VH F   ++ H  
Sbjct: 418 SSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHER 477

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
           +  IY KL E+    +  GY  D S V       E    ++  YHSE+LAIAFGL T P 
Sbjct: 478 SKEIYEKLAELGEEMEKAGYVADTSYVLREVDGDEK--NQTIRYHSERLAIAFGLITFPA 535

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              +R++KNLR            SI   R +IVRD  R+H F DG CSC DYW
Sbjct: 536 DRPIRVMKNLRVCGDCHNAIKFMSICTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 155/306 (50%), Gaps = 4/306 (1%)

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R +++ K  +LHG++++SG     +V+ NL+  Y+ + +   +R  F++ P++   +W+S
Sbjct: 27  RSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSS 86

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           IISC+ Q      +L+   +M    +  D   L     SC  +   ++G  +H ++ + G
Sbjct: 87  IISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTG 146

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +   V+VG++LVDMYAKCG +  A  +F  M  R+V++W+ M+ GY   G  +EA+  FK
Sbjct: 147 YDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFK 206

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV-SRYNLKPGIKHYGCLVDLYGR 339
           + L      +  +F  ++  C++  L+E G +   + + S ++    +     LV LY +
Sbjct: 207 EALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVG--SSLVSLYSK 264

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            G LE A +V +     +  +W  +L +C  H + +   I +   ++L          L 
Sbjct: 265 CGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQ-KVIELFKRMKLSGMKPNFITFLN 323

Query: 400 TIYACT 405
            + AC+
Sbjct: 324 VLNACS 329


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 200/560 (35%), Positives = 302/560 (53%), Gaps = 53/560 (9%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+L+F  +      +W S+   +       +A+  +  M +    RP++ T +  L AC 
Sbjct: 132 ARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNG-ERPNSVTVSSILPACT 190

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +K L   +E+HGFV+R+G    V VS+ L+  YA+   I  A+ VFD+M  RD VSWN 
Sbjct: 191 DLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNV 250

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLD------------------------------G 190
           +I+ Y       + L ++ RM  E VGL+                              G
Sbjct: 251 LITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSG 310

Query: 191 F-----TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           F     T+  +L +C ++ +L  G  +H       F + +    ALV MYAKCG+L+ + 
Sbjct: 311 FKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSR 370

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VFS M KRD +SWN+MI+   +HG G+EA+  F++M+ +G  P+S+TF G+L GCSH  
Sbjct: 371 RVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSR 430

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRT 363
           LV+EG+  F  M   ++++P   H+ C+VD+  RAG+LE+A E I    P +P    W  
Sbjct: 431 LVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIK-KMPIEPTAGAWGA 489

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LLG C++++NVE+G IA   L ++E+ + G+YVLL+ I    K     + TRKL++  G+
Sbjct: 490 LLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGV 549

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
              PG SWI++ N+VH FVV DKS+  +D IYR L+ +  + +  GY  +   V      
Sbjct: 550 TKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQ 609

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIAYSRD------------LIV 531
            E   E+    HSEKLA+AFG+      +S+R+ KNLR      +            +IV
Sbjct: 610 EEK--EEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIV 667

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RD +R+HHFRDGLCSC D+W
Sbjct: 668 RDSLRFHHFRDGLCSCQDFW 687



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 170/389 (43%), Gaps = 36/389 (9%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S S  L  A+ LF++I  P    W  LI A  +    L+AI YYN     +   PD    
Sbjct: 22  SNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLL 81

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
               KAC  ++ +   + +H   IR G+   V++   L+  Y      E AR VF+ MP 
Sbjct: 82  LSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPF 141

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           RD++SW S+ SCY       EAL  + +M       +  T+  +L +C  +  L  G  +
Sbjct: 142 RDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREV 201

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY------ 266
           H      G   +V+V +ALV+MYA C ++  A  VF  M +RD +SWN +I  Y      
Sbjct: 202 HGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKEC 261

Query: 267 -------------GV----------------HGRGDEAISFFKQMLMAGFHPDSITFLGL 297
                        GV                +GR ++A+    +M  +GF P+ IT   +
Sbjct: 262 EKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSV 321

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           L  C++   +  G +  H  + R+     +     LV +Y + G LE +  V +  +  D
Sbjct: 322 LPACTNLESLRGG-KQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRD 380

Query: 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
            V W T++ +  +H N E   +  + +V 
Sbjct: 381 TVSWNTMIIATSMHGNGEEALLLFREMVD 409



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 128/253 (50%), Gaps = 2/253 (0%)

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           ++   ++ Y+ +G ++ AR +FD +P+ DL +W  +IS  T+    LEA++ Y   R ++
Sbjct: 13  LALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKN 72

Query: 186 -VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            V  D   L+ +  +CA +  +     +H  A   GF   V +GNAL+DMY KC   + A
Sbjct: 73  CVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGA 132

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             VF  M  RDV+SW SM   Y   G   EA+  F++M + G  P+S+T   +L  C+  
Sbjct: 133 RLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDL 192

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364
             ++ G E  H  V R  +   +     LV++Y     + +A  V ++ S  D V W  L
Sbjct: 193 KDLKSGRE-VHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVL 251

Query: 365 LGSCKIHRNVEIG 377
           + +  +++  E G
Sbjct: 252 ITAYFLNKECEKG 264


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 191/542 (35%), Positives = 294/542 (54%), Gaps = 17/542 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA      L YA  +F  +       W++L+  F      L+A   +  ML  
Sbjct: 271 GTALLDMYA--KCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQ 328

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            L      +    L+AC  +  L   ++LH  + +SG    +    +L+  YA  G+I+ 
Sbjct: 329 GLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQ 388

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A ++FD M  +D VS+++++S Y Q     EA +++ +M+  +V  D  T+V L+ +C+H
Sbjct: 389 ATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSH 448

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL  G   H      G      + NAL+DMYAKCG +D +  +F  M  RD++SWN+M
Sbjct: 449 LAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTM 508

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I GYG+HG G EA + F  M      PD +TF+ L+  CSH GLV EG  +FHMM  +Y 
Sbjct: 509 IAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYG 568

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           + P ++HY  +VDL  R G L++A + I      +D  +W  LLG+C++H+N+++G+   
Sbjct: 569 ITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVS 628

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
             + QL     G++VLL+ I++     +  A  R + K  G K +PG SWIEI   +H F
Sbjct: 629 SMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAF 688

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
           +  D+SH  +  IY++L+ I+     +GY  D S V       E+  EK+  YHSEKLAI
Sbjct: 689 IGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVL--QDVEEEEKEKALLYHSEKLAI 746

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           AFG+ T  +  ++ + KNLR            ++   R +IVRD  R+HHF++G CSCGD
Sbjct: 747 AFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGD 806

Query: 550 YW 551
           +W
Sbjct: 807 FW 808



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 172/339 (50%), Gaps = 12/339 (3%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93
           +   LS A+ LF+QI  P    +N+LIRA++    P  A+  Y  +    L +P+ +TF 
Sbjct: 75  ICGDLSLARHLFDQIPAPGIHDYNALIRAYSLR-GPALALRLYRSLRRRRLPQPNNYTFP 133

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
           F LKAC  +  L   + +H    R+G    + VST L+  YA       A +VF  MP R
Sbjct: 134 FVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR 193

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           D+V+WN++++ Y     + + +     M+ +D   +  TLV LL   A  GAL+ G  +H
Sbjct: 194 DVVAWNAMLAGYALHGKYSDTIACLLLMQ-DDHAPNASTLVALLPLLAQHGALSQGRAVH 252

Query: 214 RI---ACEM-GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
                AC +    + V VG AL+DMYAKCG+L  A  VF  M  R+ ++W++++ G+ + 
Sbjct: 253 AYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLC 312

Query: 270 GRGDEAISFFKQMLMAG---FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
           GR  EA S FK ML  G     P S+     L  C++   +  G +  H ++++  L   
Sbjct: 313 GRMLEAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLG-KQLHALLAKSGLHTD 369

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +     L+ +Y +AG +++A  + +     D V +  L+
Sbjct: 370 LTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALV 408



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 110/233 (47%), Gaps = 6/233 (2%)

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G +  AR +FD +P   +  +N++I  Y+     L         R      + +T   +L
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
            +C+ +  L     +H  A   G    ++V  ALVD+YAKC +   A  VF RM  RDV+
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFH-PDSITFLGLLCGCSHQGLVEEGV---EY 313
           +WN+M+ GY +HG+  + I+    +LM   H P++ T + LL   +  G + +G     Y
Sbjct: 197 AWNAMLAGYALHGKYSDTIACL--LLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
                S ++ K G+     L+D+Y + G L  A  V    +  + V W  L+G
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVG 307


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 197/561 (35%), Positives = 315/561 (56%), Gaps = 25/561 (4%)

Query: 12   LNKARQAHEIHGEWLLNSYAISVSSSL--SYAQL-----LFNQIQNPQTQAWNSLIRAFA 64
            L +    H I   + LN Y  SV   +   Y QL     +  ++      +W ++I  + 
Sbjct: 481  LGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYV 540

Query: 65   QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCV 124
            Q     +A+  +  M    + + D   F   + AC  ++AL + Q++H     +G+   +
Sbjct: 541  QHDMFSEALQLFEEMEYRGI-QFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599

Query: 125  VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
             ++  L+  YA  G I+ A   F+ + +++ +SWNS++S   Q+ +  EAL+++ RM   
Sbjct: 600  SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRT 659

Query: 185  DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            +  ++ FT    +S+ A +  +  G  +H +  + G+     V N+L+ +YAK G++  A
Sbjct: 660  EAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDA 719

Query: 245  FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
            +  F+ M +R+V+SWN+MI GY  HG G EA+  F++M + G  P+ +TF+G+L  CSH 
Sbjct: 720  WREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHI 779

Query: 305  GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRT 363
            GLV+EG++YF  M   ++L P  +HY C+VDL GRAG+L++A+E I     P+D ++WRT
Sbjct: 780  GLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRT 839

Query: 364  LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
            LL +C IH+N+EIGE A  +L++LE   +  YVL++ IYA ++       +RKL+K  G+
Sbjct: 840  LLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGV 899

Query: 424  KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE-SLVAVSGS 482
            K  PG SWIE+ N VH F   DK HP  + IY  +  +  R   IGY +D  SL+  S  
Sbjct: 900  KKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQ 959

Query: 483  SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
              +D +   +  HSEKLAIAFGL +  +   +R++KNLR            S   +R +I
Sbjct: 960  GQKDPI---THVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSII 1016

Query: 531  VRDRVRYHHFRDGLCSCGDYW 551
            VRD  R+HHF  G+CSC D+W
Sbjct: 1017 VRDAHRFHHFDGGVCSCKDFW 1037



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 159/323 (49%), Gaps = 3/323 (0%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F++  N    +WN +I  F    S  Q    +  ML   ++ P+ +TF   LKAC    
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT-PNGYTFAGVLKACVGGD 173

Query: 104 -ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
            A N  +++H      G++   +V+  L+  Y+ NG IE+A+ VF+ +  +D+V+W ++I
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           S  +Q     EA+ L+  M   ++    + L  +LS+   +    +G  LH +  + GF 
Sbjct: 234 SGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH 293

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
              YV N LV +Y++   L SA  +FS M  RD +S+NS+I G    G  D A+  F +M
Sbjct: 294 SETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKM 353

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
                 PD IT   LL  C+  G + +G++  H    +  +   I   G L+DLY +   
Sbjct: 354 QRDCLKPDCITVASLLSACASVGALHKGMQ-LHSHAIKAGMSADIILEGSLLDLYSKCAD 412

Query: 343 LEKALEVINTSSPSDPVLWRTLL 365
           +E A +   T+   + VLW  +L
Sbjct: 413 VETAHKFFLTTETENIVLWNVML 435



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 162/326 (49%), Gaps = 2/326 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +FN I       W ++I   +Q+    +AI  +  M  AS   P  +  +  L A  
Sbjct: 214 AKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDM-HASEIFPTPYVLSSVLSAST 272

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +++     ++LH  VI+ G+     V   L+  Y+ +  + +A  +F  M  RD VS+NS
Sbjct: 273 KIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNS 332

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS   Q  F   AL+L+ +M+ + +  D  T+  LLS+CA VGAL+ G+ LH  A + G
Sbjct: 333 LISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAG 392

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               + +  +L+D+Y+KC ++++A   F      +++ WN M+V YG      ++   F+
Sbjct: 393 MSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFR 452

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QM M G  P+  T+  +L  C+  G +  G E  H  V +   +  +     L+D+Y + 
Sbjct: 453 QMQMEGMIPNQFTYPSILRTCTSLGALYLG-EQIHTHVIKTGFQLNVYVCSVLIDMYAKY 511

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLG 366
           G+L  AL ++      D V W  ++ 
Sbjct: 512 GQLALALRILRRLPEDDVVSWTAMIA 537



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 163/340 (47%), Gaps = 4/340 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ Y  S  + +  A   F   +      WN ++ A+ Q  +   +   +  M M  + 
Sbjct: 403 LLDLY--SKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMI 460

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+ FT+   L+ C  + AL   +++H  VI++G++  V V + L+  YA  G +  A  
Sbjct: 461 -PNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALR 519

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +   +PE D+VSW ++I+ Y Q     EAL+L+E M +  +  D       +S+CA + A
Sbjct: 520 ILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRA 579

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H  +   GF   + + NAL+ +YA+CG +  A+  F ++  ++ +SWNS++ G
Sbjct: 580 LRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSG 639

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
               G  +EA+  F +ML      +  T+   +   +    +++G +  H MV +     
Sbjct: 640 LAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQG-QQIHSMVLKTGYDS 698

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             +    L+ LY ++G +  A    N  S  + + W  ++
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMI 738



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 159/333 (47%), Gaps = 2/333 (0%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S S  L  A+ +F+ + +    ++NSLI    Q     +A+  +  M    L +PD  T 
Sbjct: 307 SRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCL-KPDCITV 365

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              L AC  V AL+K  +LH   I++G    +++  +L+  Y+    +E A   F     
Sbjct: 366 ASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTET 425

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
            ++V WN ++  Y Q     ++ +++ +M+ E +  + FT   +L +C  +GAL +G  +
Sbjct: 426 ENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQI 485

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H    + GF  +VYV + L+DMYAK G L  A  +  R+ + DV+SW +MI GY  H   
Sbjct: 486 HTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMF 545

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EA+  F++M   G   D+I F   +  C+    + +G +  H           +     
Sbjct: 546 SEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQIHAQSYAAGFGADLSINNA 604

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           L+ LY R G++++A          + + W +L+
Sbjct: 605 LISLYARCGRIQEAYLAFEKIGDKNNISWNSLV 637



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 132/283 (46%), Gaps = 6/283 (2%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           R +   + + L+ C    +L +   LH  + +SG++   ++  +L+  Y  +G    A  
Sbjct: 55  RSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVK 114

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG- 204
           VFD    R + SWN +I  +     + +   L+ RM  E +  +G+T   +L +C  VG 
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC--VGG 172

Query: 205 --ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
             A N    +H      GF  S  V N L+D+Y+K G ++SA  VF+ +  +D+++W +M
Sbjct: 173 DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAM 232

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I G   +G  +EAI  F  M  +   P       +L   +   L E G E  H +V ++ 
Sbjct: 233 ISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELG-EQLHCLVIKWG 291

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                     LV LY R+ KL  A  + +T +  D V + +L+
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLI 334



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 84/206 (40%), Gaps = 5/206 (2%)

Query: 165 YTQASFHLEA-----LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           + Q + H+E      ++L   M    V  +    + LL  C   G+L   + LH    + 
Sbjct: 28  FDQTTLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKS 87

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           GF     + ++LVD Y + G+   A  VF     R V SWN MI  +       +    F
Sbjct: 88  GFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLF 147

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           ++ML  G  P+  TF G+L  C    +    V+  H     Y           L+DLY +
Sbjct: 148 RRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSK 207

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLL 365
            G +E A +V N     D V W  ++
Sbjct: 208 NGYIESAKKVFNCICMKDIVTWVAMI 233


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 192/553 (34%), Positives = 295/553 (53%), Gaps = 29/553 (5%)

Query: 21  IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           + G  LL +YA   S+ LS A+  F+ IQ+P   +WN++  A+ Q   P +A+  +  ML
Sbjct: 256 VLGTTLLTTYA--RSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERML 313

Query: 81  MASLSRPDTFTFTFTLKAC-----ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
           +  + RP   TF   L AC     +   A+ K   +   +  +G E    V+   +  YA
Sbjct: 314 LEGV-RPSVATFITALTACAAYPPQTASAIGK--RIQSLLEEAGLEGDTAVANATLNMYA 370

Query: 136 ANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFT 192
             G +  AR+VF+ +    RD ++WNS+++ Y       EA +L++ M  E  V  +  T
Sbjct: 371 KCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVT 430

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF--SR 250
            V +L +     ++  G  +H      GF     + NAL++MYAKCG+LD A  +F  S 
Sbjct: 431 FVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSS 490

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
             + DV++W S++ GY  +G+ + A+  F  M   G  P+ ITF+  L  C+H G +E+G
Sbjct: 491 SNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQG 550

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI 370
            E    M   + + P  KH+ C+VDL GR G+L++A +++  +S +D + W  LL +CK 
Sbjct: 551 CELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVITWMALLDACKN 610

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS 430
            + +E GE   + ++QL+   A  Y++LA++YA        A  RK +   GI+  PG S
Sbjct: 611 SKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCS 670

Query: 431 WIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEK 490
            +E+  ++H F   DKSHP ++ IY +LE +    K  GY  D  LV      S++  E+
Sbjct: 671 AVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVL--HDVSQEHKER 728

Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYH 538
               HSEKLAIAFGL +TP G+ LR++KNLR            S    RD+++RD  RYH
Sbjct: 729 LLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYH 788

Query: 539 HFRDGLCSCGDYW 551
           HF  G CSCGDYW
Sbjct: 789 HFTSGTCSCGDYW 801



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 191/428 (44%), Gaps = 24/428 (5%)

Query: 17  QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQ---AWNSLIRAFAQSLSPLQAI 73
           + + + G  L++ Y  S   SL  A+  F+++     +    WN++I AF ++ S  +A+
Sbjct: 39  EENSVLGNALISMY--SKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREAL 96

Query: 74  FYYNHMLMASLSRPDTFTFTFTLKACERVK--ALNKCQELHGFVIRSGYERCVVVSTNLM 131
             +  M       P++ TF   L +C      +L   + +HG ++ +G ER   V T L+
Sbjct: 97  QLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALV 156

Query: 132 RGYAANGVIEAARSVF----DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
             Y   G ++ A  VF    D  P   LV+ +++IS   Q  +  E+L+L+  M  E   
Sbjct: 157 DSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTK 216

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEM-GFVESVYVGNALVDMYAKCGNLDSAFC 246
             G TLV +L++C+ +   +   F+   A E+        +G  L+  YA+  +L  A  
Sbjct: 217 PSGVTLVSVLNACSMLPVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARA 276

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
            F  ++  DV+SWN+M   Y  H R  EA+  F++ML+ G  P   TF+  L  C+    
Sbjct: 277 TFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPP 336

Query: 307 VEEGV--EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWR 362
                  +    ++    L+         +++Y + G L  A  V    SP+  D + W 
Sbjct: 337 QTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWN 396

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACTKDEEGVARTRKL--- 417
           ++L +   H    +G+ A +    +EA      + V    +   +     +A+ R++   
Sbjct: 397 SMLAAYGHH---GLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHAR 453

Query: 418 IKSNGIKT 425
           + SNG ++
Sbjct: 454 VVSNGFES 461



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 5/171 (2%)

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL---DSAFCVFS 249
           L+ L+++C+ +G L  G  +H    +  F E+  +GNAL+ MY+KCG+L     AF    
Sbjct: 10  LIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLP 69

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF-HPDSITFLGLLCGCSHQGLVE 308
           R  KRDV++WN+MI  +  +G   EA+  F+ M   G   P+S+TF+ +L  C   GL+ 
Sbjct: 70  RASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLS 129

Query: 309 -EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
            E V   H  +    ++        LVD YG+ G L+ A EV    S  +P
Sbjct: 130 LEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEP 180



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 157/362 (43%), Gaps = 32/362 (8%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           RP+       + AC  +  L   + +H  +    +E   V+   L+  Y+  G +  A+ 
Sbjct: 4   RPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQ 63

Query: 146 VFDNMP---ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV-GLDGFTLVCLLSSCA 201
            FD +P   +RD+V+WN++IS + +     EAL+L+  M  +     +  T V +L SC 
Sbjct: 64  AFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCV 123

Query: 202 HVGALNMGIF--LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD---- 255
             G L++     +H      G     +V  ALVD Y K G+LD A+ VF  +RK D    
Sbjct: 124 EAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVF--LRKSDEEPS 181

Query: 256 --VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG-------L 306
             +++ ++MI     +G   E++  F  M + G  P  +T + +L  CS          +
Sbjct: 182 TSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFV 241

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           +E+ +E   +  +R N+         L+  Y R+  L +A    +     D V W  +  
Sbjct: 242 LEQAMEV--VSATRDNVLGTT-----LLTTYARSNDLSRARATFDAIQSPDVVSWNAMAA 294

Query: 367 S-CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA---RTRKLIKSNG 422
           +  + HR  E   +  + L++    S   ++   T  A    +   A   R + L++  G
Sbjct: 295 AYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAG 354

Query: 423 IK 424
           ++
Sbjct: 355 LE 356


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 191/535 (35%), Positives = 286/535 (53%), Gaps = 74/535 (13%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           RPD  +    L AC  + A    + +HG  +RSG    + V   L+  YA  G+++ A  
Sbjct: 10  RPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASK 69

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL----------------- 188
           VFD + E+D+VSWN++++ Y+Q     +AL L+E+MR E++ L                 
Sbjct: 70  VFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGL 129

Query: 189 -----------------------------DG------FTLVCLLSSCAHVGALNMGIFLH 213
                                        DG      FT+ C L +CA + AL +G  +H
Sbjct: 130 GCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIH 189

Query: 214 RIACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
                  F  + +YV N L+DMYAK G++D A  VF  +++++ +SW S++ GYG+HGRG
Sbjct: 190 AYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRG 249

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EA+  F +M   G  PD +T L +L  CSH G++++G+E+F+ M   + + PG +HY C
Sbjct: 250 KEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYAC 309

Query: 333 LVDLYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           +VDL GRAG+L +A+E+I      PS  ++W  LL  C+IH NVE+GE A K L++L + 
Sbjct: 310 MVDLLGRAGRLNEAMELIEGMQMEPS-SIVWVALLSGCRIHANVELGEHAAKQLLELNSE 368

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           + G Y LL+ IYA  +  + VAR R L+K++GI+  PG SW++       F V DK+HP 
Sbjct: 369 NDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQ 428

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDES--LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
           +  IY  L  +  R K +GY  + S  L  V      D L +    HSEKLA+A+G+  +
Sbjct: 429 SKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFE----HSEKLALAYGILIS 484

Query: 509 PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             G  +RI KNLR            S+    ++I+RD  R+HHF+ G CSC  YW
Sbjct: 485 APGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 132/263 (50%), Gaps = 23/263 (8%)

Query: 44  LFNQIQNPQTQ----AWNSLIRAFAQSLSPLQAIFYYNHMLMAS---------------- 83
           LF +++    +    +W+++I AFAQ     + +  +  M                    
Sbjct: 101 LFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDG 160

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN-LMRGYAANGVIEA 142
           L +P+ FT +  L AC R+ AL   +++H +++R+ ++   +   N L+  YA +G I+ 
Sbjct: 161 LVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDV 220

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR VFDN+ +++ VSW S+++ Y       EAL++++ MR   +  DG TL+ +L +C+H
Sbjct: 221 ARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSH 280

Query: 203 VGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWN 260
            G ++ GI F + ++ E G +        +VD+  + G L+ A  +   M+ +   + W 
Sbjct: 281 SGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWV 340

Query: 261 SMIVGYGVHGRGDEAISFFKQML 283
           +++ G  +H   +      KQ+L
Sbjct: 341 ALLSGCRIHANVELGEHAAKQLL 363



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 135/300 (45%), Gaps = 60/300 (20%)

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
           D+  D  +LV +L +CA +GA   G  +H IA   G  E ++VGNALVDMYAKCG +D A
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             VF R++++DV+SWN+M+ GY   GR ++A+  F++M       + +++  ++   + +
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 305 GL---------------VEEGVEYFHMMVSRYNL-KPGI--------------------- 327
           GL                 + +E F  M  +  L KP                       
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 328 -------KHY--------GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH- 371
                   H+         CL+D+Y ++G ++ A  V +     + V W +L+    +H 
Sbjct: 188 IHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHG 247

Query: 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTTPG 428
           R  E  E+    + ++     G   LL  +YAC+     ++G+     + K  G+   PG
Sbjct: 248 RGKEALEV-FDEMRRVGLQPDG-VTLLVVLYACSHSGMIDQGIEFFNSMSKEFGV--IPG 303


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 207/564 (36%), Positives = 312/564 (55%), Gaps = 43/564 (7%)

Query: 28  NSYAISVS---SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           NS  I +S   S +  A  LF++I  P T ++N ++  + ++++  +A  +++ M     
Sbjct: 96  NSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDA 155

Query: 85  SRPDTFTFTFTL-----KACERVKALNKCQELHGFVIRSGYERC---------------- 123
           +  +T    +       KA E   ++ +  E+    + SGY  C                
Sbjct: 156 ASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVR 215

Query: 124 -VVVSTNLMRGYAANGVIEAARSVFDNMP-ERDLVSWNSIISCYTQASFHLEALKLYERM 181
            VV  T ++ GY     +E A ++F +M   ++LV+WN++IS Y + S   + LKL+  M
Sbjct: 216 GVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAM 275

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
             E +  +   L   L  C+ + AL +G  +H+I  +      V    +L+ MY KCG L
Sbjct: 276 LEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGEL 335

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
             A+ +F  M+K+DV++WN+MI GY  HG  D+A+  F++M+     PD ITF+ +L  C
Sbjct: 336 GDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLAC 395

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--V 359
           +H GLV  G+ YF  MV  Y ++P   HY C+VDL GRAGKLE+AL++I  S P  P   
Sbjct: 396 NHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIR-SMPFRPHAA 454

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
           ++ TLLG+C++H+NVE+ E A + L+QL + +A  YV LA IYA     E VAR RK +K
Sbjct: 455 VFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMK 514

Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
            + +   PG+SWIEI N+VH F   D+ HP+ D I++KL+E+  + K  GY K E   A+
Sbjct: 515 ESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGY-KPELEFAL 573

Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
                E   EK   +HSEKLA+AFG    P G+ +++ KNLR            S    R
Sbjct: 574 HNVEEEQ-KEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKR 632

Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
           ++IVRD  R+HHF+DG CSCGDYW
Sbjct: 633 EIIVRDTTRFHHFKDGSCSCGDYW 656



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 114/299 (38%), Gaps = 65/299 (21%)

Query: 137 NGVIEAARSVFDNMPERDLVSWNSI--------------------------------ISC 164
           +G I+ A  VF  M  ++ ++WNS+                                +SC
Sbjct: 74  SGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSC 133

Query: 165 YTQASFHLEALKLYERMRFEDVG-----LDGF----------------------TLVCLL 197
           Y +     +A   ++RM F+D       + G+                      +   ++
Sbjct: 134 YVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMI 193

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDV 256
           S     G L       ++A     V  V    A++  Y K   ++ A  +F  M   +++
Sbjct: 194 SGYIECGDLEKASHFFKVAP----VRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNL 249

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           ++WN+MI GY  + R ++ +  F+ ML  G  P+S      L GCS    ++ G +  H 
Sbjct: 250 VTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQ-IHQ 308

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
           +VS+  L   +     L+ +Y + G+L  A ++       D V W  ++     H N +
Sbjct: 309 IVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNAD 367



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 106/268 (39%), Gaps = 64/268 (23%)

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG--------VHGRGDE 274
           + ++  N ++    + G++D A  VF  MR ++ ++WNS+++G           H   DE
Sbjct: 59  DQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDE 118

Query: 275 ------------------------AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
                                   A SFF +M       D+ ++  ++ G + +G +E+ 
Sbjct: 119 IPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK----DAASWNTMITGYARRGEMEKA 174

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI 370
            E F+ M+ +  +      +  ++  Y   G LEKA      +     V W  ++     
Sbjct: 175 RELFYSMMEKNEVS-----WNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMK 229

Query: 371 HRNVEIGEIAM------KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
            + VE+ E         KNLV   A  +G YV        ++ E+G+   R +++     
Sbjct: 230 AKKVELAEAMFKDMTVNKNLVTWNAMISG-YV------ENSRPEDGLKLFRAMLEEGIRP 282

Query: 425 TTPG----------WSWIEIGNQVHKFV 442
            + G           S +++G Q+H+ V
Sbjct: 283 NSSGLSSALLGCSELSALQLGRQIHQIV 310


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 199/519 (38%), Positives = 285/519 (54%), Gaps = 47/519 (9%)

Query: 79  MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
           M+  S   P+ +TF F  KAC     + + +++    I+ G E  + V+  ++R YA  G
Sbjct: 22  MVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWG 81

Query: 139 VIEAARSVFD-------------------------------NMPERDLVSWNSIISCYTQ 167
           +++ AR VFD                                M ERD+VSW +II+ Y Q
Sbjct: 82  LVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQ 141

Query: 168 ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227
                EAL L+  M       + FTL   L++CA++ AL+ G ++H    +     +  +
Sbjct: 142 VGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERL 201

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMR--KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
             +L+DMYAKCG +D A  VF      K  V  WN+MI GY +HG+  EAI  F+QM + 
Sbjct: 202 LASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVE 261

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
              P+ +TF+ LL  CSH  LVEEG  YF  M S Y ++P I+HYGC+VDL GR+G L++
Sbjct: 262 KVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKE 321

Query: 346 ALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
           A E V N     D  +W  LLG+C+IH+++E G+   K + +L++   G +VLLA +Y+ 
Sbjct: 322 AEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSA 381

Query: 405 TKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHR 464
           +   +     R+ I+ +G K TPG S IE+    H+F+V D+SHP    +Y  L+E+  +
Sbjct: 382 SGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTK 441

Query: 465 AKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--- 521
            K  GY  +   V +     ED  E + + HSEKLAIAFGL  TP GT++RIVKNLR   
Sbjct: 442 LKNAGYVPEFGEVLLDIDDEED-KETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCA 500

Query: 522 ---------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                    S  Y R++IVRDR+RYHHF+DG CSC DYW
Sbjct: 501 DCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 127/276 (46%), Gaps = 10/276 (3%)

Query: 3   LKKHARYVGLNKARQAHEIHGEWLLNSYAISV-----SSSLSYAQLLFNQIQNPQTQAWN 57
           ++ +A +  +++AR+  +   +  L S+ I +     S  +  A+ +F+++      +W 
Sbjct: 74  IRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWT 133

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
           ++I  + Q     +A+  ++ ML      P+ FT    L AC  + AL++ + +H ++ +
Sbjct: 134 TIIAGYVQVGCFKEALDLFHEMLQTG-PPPNEFTLASALAACANLVALDQGRWIHVYIDK 192

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV--SWNSIISCYTQASFHLEAL 175
           S  +    +  +L+  YA  G I+ A  VF +     L    WN++I  Y       EA+
Sbjct: 193 SEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAI 252

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEMGFVESVYVGNALVDM 234
            L+E+M+ E V  +  T V LL++C+H   +  G  +   +A   G    +     +VD+
Sbjct: 253 DLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDL 312

Query: 235 YAKCGNLDSA-FCVFSRMRKRDVLSWNSMIVGYGVH 269
             + G L  A   VF+     D   W +++    +H
Sbjct: 313 LGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIH 348


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 197/561 (35%), Positives = 315/561 (56%), Gaps = 25/561 (4%)

Query: 12   LNKARQAHEIHGEWLLNSYAISVSSSL--SYAQL-----LFNQIQNPQTQAWNSLIRAFA 64
            L +    H I   + LN Y  SV   +   Y QL     +  ++      +W ++I  + 
Sbjct: 481  LGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYV 540

Query: 65   QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCV 124
            Q     +A+  +  M    + + D   F   + AC  ++AL + Q++H     +G+   +
Sbjct: 541  QHDMFSEALQLFEEMEYRGI-QFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599

Query: 125  VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
             ++  L+  YA  G I+ A   F+ + +++ +SWNS++S   Q+ +  EAL+++ RM   
Sbjct: 600  SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRT 659

Query: 185  DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            +  ++ FT    +S+ A +  +  G  +H +  + G+     V N+L+ +YAK G++  A
Sbjct: 660  EAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDA 719

Query: 245  FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
            +  F+ M +R+V+SWN+MI GY  HG G EA+  F++M + G  P+ +TF+G+L  CSH 
Sbjct: 720  WREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHI 779

Query: 305  GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRT 363
            GLV+EG++YF  M   ++L P  +HY C+VDL GRAG+L++A+E I     P+D ++WRT
Sbjct: 780  GLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRT 839

Query: 364  LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
            LL +C IH+N+EIGE A  +L++LE   +  YVL++ IYA ++       +RKL+K  G+
Sbjct: 840  LLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGV 899

Query: 424  KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE-SLVAVSGS 482
            K  PG SWIE+ N VH F   DK HP  + IY  +  +  R   IGY +D  SL+  S  
Sbjct: 900  KKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQ 959

Query: 483  SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
              +D +   +  HSEKLAIAFGL +  +   +R++KNLR            S   +R +I
Sbjct: 960  GQKDPI---THVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSII 1016

Query: 531  VRDRVRYHHFRDGLCSCGDYW 551
            VRD  R+HHF  G+CSC D+W
Sbjct: 1017 VRDAHRFHHFDGGVCSCKDFW 1037



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 158/323 (48%), Gaps = 3/323 (0%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F++  N    +WN +I  F    S  Q    +  ML   ++ P+ +TF   LKAC    
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT-PNGYTFAGVLKACVGGD 173

Query: 104 -ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
            A N  +++H      G++   +V+  L+  Y+ NG IE+A+ VF+ +  +D+V+W ++I
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           S  +Q     EA+ L+  M   ++    + L  +LS+   +    +G  LH +  + GF 
Sbjct: 234 SGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH 293

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
              YV N LV +Y++   L SA  +FS M  RD +S+NS+I G    G  D A+  F +M
Sbjct: 294 SETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKM 353

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
                 PD IT   LL  C+  G + +G++  H    +  +   I   G L+DLY +   
Sbjct: 354 QRDCLKPDCITVASLLSACASVGALHKGMQ-LHSHAIKAGMSADIILEGSLLDLYSKCAD 412

Query: 343 LEKALEVINTSSPSDPVLWRTLL 365
           +E A +    +   + VLW  +L
Sbjct: 413 VETAHKFFLXTETENIVLWNVML 435



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 162/326 (49%), Gaps = 2/326 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +FN I       W ++I   +Q+    +AI  +  M  AS   P  +  +  L A  
Sbjct: 214 AKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDM-HASEIFPTPYVLSSVLSAST 272

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +++     ++LH  VI+ G+     V   L+  Y+ +  + +A  +F  M  RD VS+NS
Sbjct: 273 KIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNS 332

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS   Q  F   AL+L+ +M+ + +  D  T+  LLS+CA VGAL+ G+ LH  A + G
Sbjct: 333 LISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAG 392

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               + +  +L+D+Y+KC ++++A   F      +++ WN M+V YG      ++   F+
Sbjct: 393 MSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFR 452

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QM M G  P+  T+  +L  C+  G +  G E  H  V +   +  +     L+D+Y + 
Sbjct: 453 QMQMEGMIPNQFTYPSILRTCTSLGALYLG-EQIHTHVIKTGFQLNVYVCSVLIDMYAKY 511

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLG 366
           G+L  AL ++      D V W  ++ 
Sbjct: 512 GQLALALRILRRLPEDDVVSWTAMIA 537



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 163/340 (47%), Gaps = 4/340 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ Y  S  + +  A   F   +      WN ++ A+ Q  +   +   +  M M  + 
Sbjct: 403 LLDLY--SKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMI 460

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+ FT+   L+ C  + AL   +++H  VI++G++  V V + L+  YA  G +  A  
Sbjct: 461 -PNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALR 519

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +   +PE D+VSW ++I+ Y Q     EAL+L+E M +  +  D       +S+CA + A
Sbjct: 520 ILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRA 579

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H  +   GF   + + NAL+ +YA+CG +  A+  F ++  ++ +SWNS++ G
Sbjct: 580 LRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSG 639

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
               G  +EA+  F +ML      +  T+   +   +    +++G +  H MV +     
Sbjct: 640 LAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQG-QQIHSMVLKTGYDS 698

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             +    L+ LY ++G +  A    N  S  + + W  ++
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMI 738



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 159/333 (47%), Gaps = 2/333 (0%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S S  L  A+ +F+ + +    ++NSLI    Q     +A+  +  M    L +PD  T 
Sbjct: 307 SRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCL-KPDCITV 365

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              L AC  V AL+K  +LH   I++G    +++  +L+  Y+    +E A   F     
Sbjct: 366 ASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTET 425

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
            ++V WN ++  Y Q     ++ +++ +M+ E +  + FT   +L +C  +GAL +G  +
Sbjct: 426 ENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQI 485

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H    + GF  +VYV + L+DMYAK G L  A  +  R+ + DV+SW +MI GY  H   
Sbjct: 486 HTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMF 545

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EA+  F++M   G   D+I F   +  C+    + +G +  H           +     
Sbjct: 546 SEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQIHAQSYAAGFGADLSINNA 604

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           L+ LY R G++++A          + + W +L+
Sbjct: 605 LISLYARCGRIQEAYLAFEKIGDKNNISWNSLV 637



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 132/283 (46%), Gaps = 6/283 (2%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           R +   + + L+ C    +L +   LH  + +SG++   ++  +L+  Y  +G    A  
Sbjct: 55  RSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVK 114

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG- 204
           VFD    R + SWN +I  +     + +   L+ RM  E +  +G+T   +L +C  VG 
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC--VGG 172

Query: 205 --ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
             A N    +H      GF  S  V N L+D+Y+K G ++SA  VF+ +  +D+++W +M
Sbjct: 173 DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAM 232

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I G   +G  +EAI  F  M  +   P       +L   +   L E G E  H +V ++ 
Sbjct: 233 ISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELG-EQLHCLVIKWG 291

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                     LV LY R+ KL  A  + +T +  D V + +L+
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLI 334



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 84/206 (40%), Gaps = 5/206 (2%)

Query: 165 YTQASFHLEA-----LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           + Q + H+E      ++L   M    V  +    + LL  C   G+L   + LH    + 
Sbjct: 28  FDQTTLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKS 87

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           GF     + ++LVD Y + G+   A  VF     R V SWN MI  +       +    F
Sbjct: 88  GFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLF 147

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           ++ML  G  P+  TF G+L  C    +    V+  H     Y           L+DLY +
Sbjct: 148 RRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSK 207

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLL 365
            G +E A +V N     D V W  ++
Sbjct: 208 NGYIESAKKVFNCICMKDIVTWVAMI 233


>gi|293334801|ref|NP_001169361.1| uncharacterized protein LOC100383228 [Zea mays]
 gi|224028917|gb|ACN33534.1| unknown [Zea mays]
          Length = 596

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 210/571 (36%), Positives = 314/571 (54%), Gaps = 32/571 (5%)

Query: 6   HARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
           HAR   L        +   +L     +  + +L +A LL   + +P T  +N+ +R  A 
Sbjct: 33  HARLHALGTLHSYPSLRARFLDRLALLPHADALPHALLLLRSLPSPATNDFNAALRGLAA 92

Query: 66  SLSPLQAIFYYNHMLMASLSRP----DTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
           S  P +++      L+ + + P    D  + +F LKA  R        +LH  + R G  
Sbjct: 93  SPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSDAFATLQLHATLFRLGVA 152

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS--FHLEALKLYE 179
             V + T L+  YA  G + +AR VFD MP RD+ +WN++++   Q +       L    
Sbjct: 153 ADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLALLLFRRL 212

Query: 180 RMRFEDVGL----DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
              F ++      +  T+V  LS+CA +G L  G+ +H  A  +G V++V VGNAL+DMY
Sbjct: 213 AGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDMY 272

Query: 236 AKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           +KCG+L  A  VF   ++  R ++S+N+ I    +HG G++A+  F +M  A   PD IT
Sbjct: 273 SKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEM-PARIEPDEIT 331

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           +L ++ GC+H GLV++G   F  M     + P +KHYG +VDL GRAG+L +A ++I + 
Sbjct: 332 YLAVMGGCNHAGLVDDGRRVFDSM----RVPPNMKHYGTIVDLLGRAGRLAEAYDMIMSM 387

Query: 354 S-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
             P+D VLW+TLLG+ K+H NV++ E+A   L  L +   GDYVLL+ +YA       V 
Sbjct: 388 PFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVG 447

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           R R  ++SN +K  PG+S+ EI   +HKF+  DK H     IYR L+EI  R   +GY  
Sbjct: 448 RVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRWREIYRALDEIGSRICALGYEP 507

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           + S   V     E+  + + +YHSEKLAIAFGL +TP G ++R++KNLR           
Sbjct: 508 ETS--NVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRTCGDCHVVAKL 565

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S AY+R +I+RDR R+H F DG CSC DYW
Sbjct: 566 ISKAYNRVIIIRDRARFHRFEDGHCSCRDYW 596


>gi|413952609|gb|AFW85258.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952610|gb|AFW85259.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952611|gb|AFW85260.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
          Length = 630

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 210/571 (36%), Positives = 314/571 (54%), Gaps = 32/571 (5%)

Query: 6   HARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
           HAR   L        +   +L     +  + +L +A LL   + +P T  +N+ +R  A 
Sbjct: 67  HARLHALGTLHSYPSLRARFLDRLALLPHADALPHALLLLRSLPSPATNDFNAALRGLAA 126

Query: 66  SLSPLQAIFYYNHMLMASLSRP----DTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
           S  P +++      L+ + + P    D  + +F LKA  R        +LH  + R G  
Sbjct: 127 SPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSDAFATLQLHATLFRLGVA 186

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS--FHLEALKLYE 179
             V + T L+  YA  G + +AR VFD MP RD+ +WN++++   Q +       L    
Sbjct: 187 ADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLALLLFRRL 246

Query: 180 RMRFEDVGL----DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
              F ++      +  T+V  LS+CA +G L  G+ +H  A  +G V++V VGNAL+DMY
Sbjct: 247 AGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDMY 306

Query: 236 AKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           +KCG+L  A  VF   ++  R ++S+N+ I    +HG G++A+  F +M  A   PD IT
Sbjct: 307 SKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEM-PARIEPDEIT 365

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           +L ++ GC+H GLV++G   F  M     + P +KHYG +VDL GRAG+L +A ++I + 
Sbjct: 366 YLAVMGGCNHAGLVDDGRRVFDSM----RVPPNMKHYGTIVDLLGRAGRLAEAYDMIMSM 421

Query: 354 S-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
             P+D VLW+TLLG+ K+H NV++ E+A   L  L +   GDYVLL+ +YA       V 
Sbjct: 422 PFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVG 481

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           R R  ++SN +K  PG+S+ EI   +HKF+  DK H     IYR L+EI  R   +GY  
Sbjct: 482 RVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRWREIYRALDEIGSRICALGYEP 541

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           + S   V     E+  + + +YHSEKLAIAFGL +TP G ++R++KNLR           
Sbjct: 542 ETS--NVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRTCGDCHVVAKL 599

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S AY+R +I+RDR R+H F DG CSC DYW
Sbjct: 600 ISKAYNRVIIIRDRARFHRFEDGHCSCRDYW 630


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 202/562 (35%), Positives = 307/562 (54%), Gaps = 54/562 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ L  +        W  LI  ++++    +A+  +N ML   ++ PD  T    L 
Sbjct: 187 LDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIA-PDEVTVIGMLS 245

Query: 98  ACERVKALNKCQELHGFV--------------IRSGYERCVVVS---------------- 127
           AC ++K LN    LH  V              +   Y +C                    
Sbjct: 246 ACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQ 305

Query: 128 --TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
               ++ GY   G ++ ARS+FD M + D++++NS+I+ Y       EAL L+ +MR   
Sbjct: 306 PWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHG 365

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC-EMGFVE-SVYVGNALVDMYAKCGNLDS 243
           +G D FT+V LL++ A +GAL  G  LH  AC E   VE  VY+G AL+DMY KCG ++ 
Sbjct: 366 LGADNFTMVGLLTASASLGALPQGRALH--ACIEQRLVERDVYLGTALLDMYMKCGRVEE 423

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A   F +M  RDV +W++MI G   +G G  A+  F  M   GFH +S+T++ +L  CSH
Sbjct: 424 AMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSH 483

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
             L++EG  YF  M   +N++P I+HYGC++DL GR+G L++A++++ T  P  P  V+W
Sbjct: 484 SCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQT-MPMQPNAVIW 542

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
            ++L +C++H+NV++ + A  +L++LE A    YV +  IY  ++  E  ++ R+L++  
Sbjct: 543 ASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKR 602

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
           G+K T G+S I +  QVHKF+V D+SHP    I   +EEI  R K  GY+   S + V  
Sbjct: 603 GVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYSPITSQITVDV 662

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
              E   E++   HSEKLAIAFGL +      + I+KNLR            S  ++R++
Sbjct: 663 DEEEK--EQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLISRLWNREI 720

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           IVRDR R+HHFR G+CSC D+W
Sbjct: 721 IVRDRSRFHHFRGGVCSCNDFW 742



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 197/465 (42%), Gaps = 78/465 (16%)

Query: 13  NKARQAHEIHGEWLLNSYAISVSSS----LSYAQLLFNQIQNPQTQAWNSLIRA-FAQSL 67
              R  H      LLNS    +S S    L YA  LF+++    T  +++ +RA F  S 
Sbjct: 24  TSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRMPC-STFLFDTALRACFRASS 82

Query: 68  SPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA-LNKCQELHGFVIRS-------- 118
            P + I  Y  M    +  PD FTF F  K C R  A +   + LH    R+        
Sbjct: 83  GPDRPIILYRRMHGVDVP-PDAFTFHFLFKCCARGGAHVLLGRMLHAACFRTLLPSAVPL 141

Query: 119 ------------------------GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
                                      + VV  T ++ G A  G+++ AR +    P R+
Sbjct: 142 IASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRN 201

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +V+W  +IS Y++A    EA+  +  M  + +  D  T++ +LS+C  +  LN G  LH 
Sbjct: 202 VVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHM 261

Query: 215 IACEMGFVESVYVGNALVDMYAKCGN--------------------------------LD 242
           +  +   + S  +  AL+DMYAKCG+                                +D
Sbjct: 262 LVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVD 321

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A  +F +M   DV+++NS+I GY   GR  EA+  F +M   G   D+ T +GLL   +
Sbjct: 322 IARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASA 381

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
             G + +G    H  + +  ++  +     L+D+Y + G++E+A+      S  D   W 
Sbjct: 382 SLGALPQG-RALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWS 440

Query: 363 TLLGSCKIHRNVEIGEIAMKNL--VQLEAASAGDYVLLATIYACT 405
            ++G    +    +G+ A+++   ++ +   A     +A + AC+
Sbjct: 441 AMIGGLAFN---GMGKAALEHFFWMKCDGFHANSVTYIAVLTACS 482


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 191/514 (37%), Positives = 299/514 (58%), Gaps = 22/514 (4%)

Query: 57  NSLIRAFAQSLSP---LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK-ALNKCQELH 112
           N+LIR    S  P    +A  ++  ML A+++ P+ FTF F LK+C  +  + +   + H
Sbjct: 101 NTLIRTHVTSPFPSARRRAAAFFPLMLRAAVA-PNKFTFPFLLKSCAALPGSPDVGLQAH 159

Query: 113 GFVIRSGYERCVVVSTNLMRGYA--ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
              ++ G+     VS  L+  Y+    G +  AR+VF+ MP    V+W+++I  Y +A  
Sbjct: 160 AAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGL 219

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
             +A+ L+  M+   V  D  T++ +L++ A +GAL +  ++ R     G  +SV + NA
Sbjct: 220 SSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVTLCNA 279

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           L+D  AKCG++D A  VF  M +R V+SW S+I    + GRG EA+  F++M   G  PD
Sbjct: 280 LIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPD 339

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
            + F+G+L  CSH G+V+EG  YF  M + Y ++P I+HYGC+VD++GRAG +E+ LE +
Sbjct: 340 DVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFV 399

Query: 351 NT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409
                  +P++WRTL+ +C+ H  +E+GE   +NL+    A   +YV+L+ +YA T+  +
Sbjct: 400 RAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNVYALTQRWK 459

Query: 410 GVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIG 469
             +  R+ +   GIK  PG S +E+  +VH+F+  D+SHP    IYR +EE+    + IG
Sbjct: 460 EKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMVEEMSRELRRIG 519

Query: 470 YTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-------- 521
           +    S V +     E+  E +  +HSEKLAIAF L  TP GT +R+VKNLR        
Sbjct: 520 HIAATSEVLL--DLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAA 577

Query: 522 ----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               S  Y+R+++VRDR R+H F+DG CSC D+W
Sbjct: 578 IKCISQVYNREIVVRDRSRFHRFKDGSCSCKDFW 611


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 198/542 (36%), Positives = 297/542 (54%), Gaps = 48/542 (8%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS-----------LSPLQAIFYYNHMLMAS 83
           +S++  AQ  F  +    T +WN++I  FAQ+           + P + +  +N M+   
Sbjct: 51  NSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGY 110

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
           +              C  + +  K  E   F       + VV  T ++ GY   G I  A
Sbjct: 111 VE-------------CGDLDSALKLFEKAPF-------KSVVAWTAMITGYMKLGRIGLA 150

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
             +F+ MPE++LV+WN++I+ Y +     + +KL+  M    +  +  TL   L  C+ +
Sbjct: 151 ERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSEL 210

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
            AL +G  +H++ C+    +    G +L+ MY KCG L+  + +F ++ +RDV++WN+MI
Sbjct: 211 SALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMI 270

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            GY  HG G +A+  F +M+  G  PD ITF+ +L  C+H G  + GV+YFH M   Y L
Sbjct: 271 SGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGL 330

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAM 381
                HY C+VDL GRAGKL +A+++I    P  P   ++ TLLG+C+IH+N E+ E A 
Sbjct: 331 VAKPDHYTCMVDLLGRAGKLVEAVDLIE-KMPFKPHAAVFGTLLGACRIHKNTEMAEFAS 389

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           + L+ L+ ASA  YV LA +YA TK  + VAR RK +KS  +  TPG+SWIE+ +  H+F
Sbjct: 390 QKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQF 449

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
              DK HP+   I+ KL+E+  + K  GY  D  L        E+  E+   +HSEKLAI
Sbjct: 450 RSGDKFHPELASIHGKLKELEKKMKLAGYVPD--LEFALHDVGEEQKEQLLLWHSEKLAI 507

Query: 502 AFGLATTPDGTSLRIVKNL-------RSIAY-----SRDLIVRDRVRYHHFRDGLCSCGD 549
           A+GL   P GT +R+ KNL       R+I Y      R++IVRD  R+HHF+DG CSC D
Sbjct: 508 AYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCAD 567

Query: 550 YW 551
           YW
Sbjct: 568 YW 569



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 139/308 (45%), Gaps = 18/308 (5%)

Query: 126 VSTNLMRG-YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           VS N M   Y  N  +E A++ F++MP +D  SWN++I+ + Q     +A  L+  M  +
Sbjct: 39  VSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTK 98

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
           +V     T   ++S     G L+  + L     E    +SV    A++  Y K G +  A
Sbjct: 99  NV----VTWNAMISGYVECGDLDSALKLF----EKAPFKSVVAWTAMITGYMKLGRIGLA 150

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             +F +M ++++++WN+MI GY  + R ++ +  F+ M+  G  P+S T    L GCS  
Sbjct: 151 ERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSEL 210

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364
             ++ G +  H +V +  L         L+ +Y + G LE   ++       D V W  +
Sbjct: 211 SALQLGRQ-VHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAM 269

Query: 365 LGSCKIHRNVEIGEIAMKNLVQL-EAASAGDYV-LLATIYACTK---DEEGVARTRKLIK 419
           +     H     G+ A+    ++ E     D++  +A + AC      + GV     + K
Sbjct: 270 ISGYAQHGE---GKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAK 326

Query: 420 SNGIKTTP 427
             G+   P
Sbjct: 327 DYGLVAKP 334



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 105/240 (43%), Gaps = 33/240 (13%)

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
           M    +V   + L  M  K G L  A  +F ++ + D +S+N+M+  Y  +   + A +F
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAF 60

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F+ M +     D+ ++  ++ G +    +++  + F +M ++      +  +  ++  Y 
Sbjct: 61  FEDMPIK----DTPSWNTMITGFAQNQQMDKARDLFLIMPTK-----NVVTWNAMISGYV 111

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVEIGE-----IAMKNLVQLEAASA 392
             G L+ AL++   +     V W  ++ G  K+ R + + E     +  KNLV   A  A
Sbjct: 112 ECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGR-IGLAERLFEKMPEKNLVTWNAMIA 170

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIK----------SNGIKTTPGWSWIEIGNQVHKFV 442
           G Y+         + E+GV   R ++           S+ +      S +++G QVH+ V
Sbjct: 171 G-YI------ENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLV 223


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 182/534 (34%), Positives = 303/534 (56%), Gaps = 23/534 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPL------QAIFYYNHMLMASLSRPDTF 90
           +L+ A  LF  + +P    +N++I  F +  + +      +A+  Y+ M    + +P  F
Sbjct: 256 ALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGM-QPSEF 314

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           TF+  L+AC         +++HG V++  +     + + L+  Y+ +G +E     F ++
Sbjct: 315 TFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSL 374

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           P++D+V+W S+IS   Q     +AL+L++      +  D FT+  ++++CA +     G 
Sbjct: 375 PKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTGE 434

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +  +A + GF     +GN+ + M A+ G++D+    F  M  RDV+SW+++I  +  HG
Sbjct: 435 QIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESRDVVSWSAVISSHAQHG 494

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
              +A+  F +M+ A   P+ +TFL +L  CSH GLV++G+ Y+ +M + Y L P IKH 
Sbjct: 495 CARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYYEIMKNEYGLSPTIKHV 554

Query: 331 GCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
            C+VDL GRAG+L  A   I  S+   D V+WR+LL SC+IH ++E G++    ++ LE 
Sbjct: 555 TCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADQIMDLEP 614

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
            S+  YV+L  +Y    +    ++TR L+K  G+K  PG SWIE+ + VH FV  DKSHP
Sbjct: 615 TSSASYVILYNMYLDAGELSLASKTRDLMKERGVKKEPGLSWIELRSGVHSFVAGDKSHP 674

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
           +++ IY+KL E++ + + +  T + S  +   SSSE  L      HSEK+A+AFG+   P
Sbjct: 675 ESNAIYKKLAEMLSKIEKLANTDNASTGSDGISSSEQNL---VGCHSEKIAVAFGMIHLP 731

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               +R++KNLR            S + +R++I+RD +R+HHFR G CSCGDYW
Sbjct: 732 QSAPIRVMKNLRVCRDCHSTMKLISGSENREIILRDGIRFHHFRGGSCSCGDYW 785



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 212/453 (46%), Gaps = 28/453 (6%)

Query: 26  LLNSYA-ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           LL +Y  + V + L  A+L+ +++      ++N LI +++++  P +A+  +     A+ 
Sbjct: 40  LLAAYCRLGVGAPLHAARLI-DEMPRRNAVSYNLLISSYSRAGLPGRALETFARARAAAG 98

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
            R D FT+   L AC R   L   + +H   +  G    V +S +L   YA+ G +  AR
Sbjct: 99  LRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEAR 158

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VFD   E D VSWNS++S Y +A    E LK++  M    +G + F L  ++  CA   
Sbjct: 159 RVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGS 218

Query: 205 ALNMGI--FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
            +   I   +H    + G    +++ +A++DMYAK G L +A  +F  +   +V+ +N+M
Sbjct: 219 DVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAM 278

Query: 263 IVGY----GVHGR--GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           I G+       G+    EA+S + +M   G  P   TF  +L  C+  G    G +  H 
Sbjct: 279 IAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQ-IHG 337

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEI 376
            V +++          L+DLY  +G +E       +    D V W +++  C  +   E+
Sbjct: 338 QVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQN---EL 394

Query: 377 GEIAMKNLVQLEAASAG----DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS-W 431
            E A++ L Q E+   G     + + + + AC      VART + I+   IK   G++ +
Sbjct: 395 FEKALR-LFQ-ESICYGLKPDLFTMSSVMNACAS--LAVARTGEQIQCLAIKY--GFNRF 448

Query: 432 IEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHR 464
             +GN    F+       D D + R+ +E+  R
Sbjct: 449 TAMGNS---FIHMCARSGDVDAVTRRFQEMESR 478


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 204/588 (34%), Positives = 300/588 (51%), Gaps = 77/588 (13%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM------------------ 79
           ++ A++LF QI +P   +WN++I  + Q+    +A   ++ M                  
Sbjct: 337 ITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQN 396

Query: 80  --------LMASLSR----PDTFTFTFTLKACERVKALNKCQELHGFVIRSG-------- 119
                   L+ +L R    P   + T +  AC  + AL   +++H   +++G        
Sbjct: 397 GRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVC 456

Query: 120 ------YERC-----------------VVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
                 Y +C                  V   + +     N ++E AR +FDNM  RD+V
Sbjct: 457 NALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVV 516

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW +IIS Y QA    EA++ ++ M  E    +   L  LLS C  +G+  +G  +H +A
Sbjct: 517 SWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVA 576

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + G    + V NAL+ MY KCG  DS   VF  M +RD+ +WN+ I G   HG G EAI
Sbjct: 577 IKHGMDSELIVANALMSMYFKCGCADS-HKVFDSMEERDIFTWNTFITGCAQHGLGREAI 635

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             ++ M   G  P+ +TF+GLL  CSH GLV+EG ++F  M   Y L P ++HY C+VDL
Sbjct: 636 KMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDL 695

Query: 337 YGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GR G ++ A + I +     D V+W  LLG+CKIH+N EIG  A + L   E ++AG+Y
Sbjct: 696 LGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNY 755

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V+L+ IY+       VA  RK++K  G+   PG SW++I N+VH FV  DK H   + I 
Sbjct: 756 VMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEID 815

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
             L+++    +  GY  D   V       E+  E S  YHSEKLA+A+GL  TP G  ++
Sbjct: 816 YTLQDLYTLLRGTGYVPDTEFVL--HDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQ 873

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           I+KNLR            S    RD+ +RD  R+HHFR+G CSCGD+W
Sbjct: 874 IMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/466 (21%), Positives = 190/466 (40%), Gaps = 64/466 (13%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL---------- 84
           +  ++ A+ LF+ + +    +WNS++  +  S   + A   +  M   +L          
Sbjct: 139 NGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGY 198

Query: 85  --------------------SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCV 124
                               + PD   F   L A   ++ L   + L   V+++G+E  V
Sbjct: 199 VRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDV 258

Query: 125 VVSTNLMRGYAANG-VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V+ T+++  Y  +   ++ A   FD M ER+  +W+++I+  +       A+ +Y R   
Sbjct: 259 VIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPV 318

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           + +     +   LL+  A  G +       RI  E      V   NA++  Y + G +D 
Sbjct: 319 KSIP----SQTALLTGLARCGRITEA----RILFEQIPDPIVVSWNAMITGYMQNGMVDE 370

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F RM  R+ +SW  MI GY  +GR +EA+   + +   G  P   +       CSH
Sbjct: 371 AKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSH 430

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIK--HYGC--LVDLYGRAGKLEKALEVINTSSPSDPV 359
            G +E G +   + V     K G +   Y C  L+ +YG+   +E   +V N     D V
Sbjct: 431 IGALETGRQVHSLAV-----KAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTV 485

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA-CTKDEEGVARTRKLI 418
            W + + +   +  +E       N++  +  S   +  + + YA   + +E V   + ++
Sbjct: 486 SWNSFIAALVQNNMLEDARHIFDNMLSRDVVS---WTTIISAYAQAERGDEAVEFFKTML 542

Query: 419 KSNGIKTTP----------GWSWIEIGNQVHKFVVDDKSHPDADMI 454
             +    +P          G    ++G Q+H   +  K   D+++I
Sbjct: 543 HEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAI--KHGMDSELI 586



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 126/246 (51%), Gaps = 6/246 (2%)

Query: 28  NSY--AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           NS+  A+  ++ L  A+ +F+ + +    +W ++I A+AQ+    +A+ ++  ML     
Sbjct: 488 NSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEH-E 546

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +P++   T  L  C  + +    Q++H   I+ G +  ++V+  LM  Y   G  ++ + 
Sbjct: 547 KPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCADSHK- 605

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD+M ERD+ +WN+ I+   Q     EA+K+YE M    V  +  T V LL++C+H G 
Sbjct: 606 VFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGL 665

Query: 206 LNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA-FCVFSRMRKRDVLSWNSMI 263
           ++ G  F   ++ + G    +     +VD+  + G++  A   ++    + D + W++++
Sbjct: 666 VDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALL 725

Query: 264 VGYGVH 269
               +H
Sbjct: 726 GACKIH 731



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 147/374 (39%), Gaps = 75/374 (20%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F+ + +    AWNS+I A+  S      +     +L  ++S  +  T T  L 
Sbjct: 49  LREAREVFDAMPHRDIIAWNSMISAYCNS-----GMLEDARILFDAISGGNVRTATILLS 103

Query: 98  ACERV-KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD-- 154
              R+ + L+  +   G       ER  V    ++  Y  NG I  AR +FD MP RD  
Sbjct: 104 GYARLGRVLDARRVFDGMP-----ERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVT 158

Query: 155 -----------------------------LVSWNSIISCYTQASFHLEALKLYERMRFED 185
                                        LV+W  +IS Y +   H +   ++  M  E 
Sbjct: 159 SWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEG 218

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK-CGNLDSA 244
              D      +LS+   +  L +   L  +  + GF   V +G +++++Y +    LD A
Sbjct: 219 ASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIA 278

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF----------KQMLMAGFH------ 288
              F  M +R+  +W++MI      GR D AI+ +          +  L+ G        
Sbjct: 279 IKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRIT 338

Query: 289 ---------PDSI--TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
                    PD I  ++  ++ G    G+V+E  E F  M  R  +      +  ++  Y
Sbjct: 339 EARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTIS-----WAGMIAGY 393

Query: 338 GRAGKLEKALEVIN 351
            + G+ E+AL+++ 
Sbjct: 394 AQNGRSEEALDLLQ 407



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 8/152 (5%)

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190
           +R  A  G +  AR VFD MP RD+++WNS+IS Y  +    +A  L++ +   +V    
Sbjct: 40  IRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR--- 96

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
            T   LLS  A +G +   +   R+   M    +V   NA+V  Y + G++  A  +F  
Sbjct: 97  -TATILLSGYARLGRV---LDARRVFDGMPERNTV-AWNAMVSCYVQNGDITMARRLFDA 151

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
           M  RDV SWNSM+ GY    +  +A + FKQM
Sbjct: 152 MPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQM 183



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 14/170 (8%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           +A +   A+ G L  A  VF  M  RD+++WNSMI  Y   G  ++A   F  +      
Sbjct: 37  SARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR 96

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
             +I    LL G +  G V +    F  M  R  +      +  +V  Y + G +  A  
Sbjct: 97  TATI----LLSGYARLGRVLDARRVFDGMPERNTVA-----WNAMVSCYVQNGDITMARR 147

Query: 349 VINTSSPSDPVLWRTLL-GSCKIHRNVE----IGEIAMKNLVQLEAASAG 393
           + +     D   W +++ G C   + V+      ++  +NLV      +G
Sbjct: 148 LFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISG 197


>gi|357137130|ref|XP_003570154.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Brachypodium distachyon]
          Length = 622

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 200/567 (35%), Positives = 310/567 (54%), Gaps = 23/567 (4%)

Query: 4   KKHARYVGLNKARQAHEIHGEWLLNSYAI-SVSSSLSYAQLLFNQIQNPQTQAWNSLIRA 62
           K HAR+V L   R     H   LL + A+ S    + YA  +F  +  P+   +N+L+R 
Sbjct: 60  KAHARHVKLGLDRSPR--HARPLLAACALGSWPGGMEYAAAIFAALDEPEAFDYNTLMRG 117

Query: 63  FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY-E 121
                 P  A+  Y  ML   +  PD +TF F LKAC R+ A  + ++LHG V + G+ +
Sbjct: 118 HVAHDDPAAALRLYAAMLEQGVE-PDRYTFPFVLKACARLAASGQGRQLHGHVAKLGFSQ 176

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC---YTQASFHLEALKLY 178
               V  +L+  Y   G  E AR  F+ M   +  +  S  +    YT+A    + L  +
Sbjct: 177 HDEHVGNSLISFYGRCGEPELARRAFEQMEAEESTTAASWSALLAAYTRAGLWADCLDSF 236

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             M       +  ++V  LS+CAH+GA ++G  +H          + ++  +LVDMYAKC
Sbjct: 237 GAMARAGGRPEESSMVSALSACAHLGAYDVGRSIHCALLRNTVALNTFMETSLVDMYAKC 296

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G +D A  VF  M  ++  ++++M+ G  +HG G +A+  F  M   G  PD   ++G+L
Sbjct: 297 GCIDKASAVFDAMDGKNEWTYSAMVSGLALHGDGLKALQVFDAMAREGHKPDEAVYVGIL 356

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT--SSPS 356
             CS  GL+EEG+  F  M   + + P  +HYGC+VDL  RAG+L+ A  +I +  + P+
Sbjct: 357 NACSRSGLLEEGLRCFDRMRLEHKVAPNAQHYGCMVDLMARAGRLDDARALIGSMPTGPT 416

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
           D   WR+LL +C+IH NVE+ E A++ L  + A +AGDYV+LA ++A TK+ +  A  R 
Sbjct: 417 D-AAWRSLLNACRIHGNVELAERALQGLSGIGAVNAGDYVILADMHARTKNWDAAAALRT 475

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
              + G+   PG+S +E+  + H+F   D+SHP    IY  L ++  + +F GY  D S 
Sbjct: 476 EAANRGLAQAPGFSAVEVHGRAHRFASQDRSHPRTAEIYEMLHQMEWQLRFEGYEPDTSE 535

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
           VA++  + E+   ++ A HS+KLA+AFGL +TP+GT +R+V NLR            S  
Sbjct: 536 VALTRDAGEEEKRRAVAAHSQKLAMAFGLLSTPEGTPVRVVTNLRMSKECHAYSALISEI 595

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + R+++VRDR R+H FR G CSC +YW
Sbjct: 596 FGREVVVRDRNRFHRFRRGACSCRNYW 622


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 190/541 (35%), Positives = 298/541 (55%), Gaps = 24/541 (4%)

Query: 26  LLNSYA-ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS-LSPLQAIFYYNHMLMAS 83
           L++ YA + +  S+ +A+ +F  +      +W +LI  + QS +     +  +  ML  S
Sbjct: 287 LVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNES 346

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
           + RP+  T++  LKAC  +   +  +++H  V+++      VV   L+  YA +G +E A
Sbjct: 347 I-RPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEA 405

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           R  FD + E +++S +  +      +          ++   D G+  FT   LLS+ A V
Sbjct: 406 RKAFDQLYETNILSMSPDVETERNNA------SCSSKIEGMDDGVSTFTFASLLSAAASV 459

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           G L  G  LH ++ + GF     + N+LV MYA+CG L+ A   F  M+  +V+SW S+I
Sbjct: 460 GLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSII 519

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            G   HG   +A+S F  M++AG  P+ +T++ +L  CSH GLV+EG E+F  M   + L
Sbjct: 520 SGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGL 579

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
            P ++HY C+VDL  R+G +E+A + IN     +D ++W+TLL +C+ + N EIGEIA  
Sbjct: 580 LPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAAN 639

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
           +++ LE      YVLL+ +YA     + VAR R L++   +    G SW+++GN +H+F 
Sbjct: 640 HVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFR 699

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             D SHP A  IY KL  ++   K IGY  D S+V      SE+  E+    HSEK+A+A
Sbjct: 700 AGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVL--HDMSEELKEQYLLQHSEKIAVA 757

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           FGL TT     +RI KNLR            S +  R++I+RD  R+H  +DG+CSCG+Y
Sbjct: 758 FGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGICSCGEY 817

Query: 551 W 551
           W
Sbjct: 818 W 818



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 140/278 (50%), Gaps = 29/278 (10%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELH--------GFVIRSGYERC-VVVSTNLMRGYAA 136
           RP+ FT     +AC         QEL         GFV+++G+    V V   L+  +A 
Sbjct: 140 RPNAFTLCAAARACFP-------QELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFAR 192

Query: 137 NGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCL 196
           NG + AA+ VFD + ER  V W  +I+ Y QA    + ++L+  M  +    DG+++  +
Sbjct: 193 NGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSM 252

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG---NLDSAFCVFSRMRK 253
           +S+C  +G++ +G  LH +A  +G V    V   LVDMYAK     +++ A  VF  M +
Sbjct: 253 ISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPR 312

Query: 254 RDVLSWNSMIVGYGVHG-RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
            +V+SW ++I GY   G + +  ++ F++ML     P+ IT+  LL  C++    + G +
Sbjct: 313 HNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQ 372

Query: 313 YFHMMVSRYNLKPGIKHY----GCLVDLYGRAGKLEKA 346
                +  + LK  I H       LV +Y  +G +E+A
Sbjct: 373 -----IHAHVLKTSIAHVNVVGNALVSMYAESGCMEEA 405



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 142/307 (46%), Gaps = 18/307 (5%)

Query: 67  LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG-YERCVV 125
           L+PL A     H++++S    D       L +  R   L   + LH  ++RS   +   V
Sbjct: 26  LNPLTA-----HLVLSSDHSCDAAKL---LTSAARAGDLRLGRALHRRLLRSEILDTDAV 77

Query: 126 VSTNLMRGYAANGVIEAARSVFDNM-PERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           V+ +L+  Y+  G +EAAR VFD M   RDLVSW ++ SC  +     E+L+L   M   
Sbjct: 78  VANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLLGEMLEL 137

Query: 185 DVGLDGFTLVCLLSSC--AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
            +  + FTL     +C    +  L  G+ L  +     +   V VG AL+DM+A+ G+L 
Sbjct: 138 GLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLV 197

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
           +A  VF  + +R  + W  +I  Y   G   + +  F  ML  GF PD  +   ++  C+
Sbjct: 198 AAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACT 257

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE----VINTSSPSDP 358
             G V  G +  H +  R  L         LVD+Y +  K+E+++E    V  T    + 
Sbjct: 258 ELGSVRLG-QQLHSVALRLGLVSDSCVSCGLVDMYAKL-KMERSMEHARKVFKTMPRHNV 315

Query: 359 VLWRTLL 365
           + W  L+
Sbjct: 316 MSWTALI 322


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 187/539 (34%), Positives = 298/539 (55%), Gaps = 38/539 (7%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +S A+ +F+++      +W ++IR + Q     + +     +L   +   +  ++T  L 
Sbjct: 41  ISEARKVFDKMPERNVVSWTAMIRGYVQ-----EGLIEEAELLFWRMPERNVVSWTVMLG 95

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
                  +++ ++L   +      + VV STN++ G  + G +  AR +FD MP+R++V+
Sbjct: 96  GLIEDGRVDEARQLFDMM----PVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVA 151

Query: 158 WNSIIS-------------CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           W S+IS              Y +  F LEAL L+  M+ E V     +++ +LS C  + 
Sbjct: 152 WTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLA 211

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           +L+ G  +H       F   +YV + L+ MY KCG+L +A  VF R   +D++ WNS+I 
Sbjct: 212 SLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIA 271

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GY  HG G++A+  F  M  +   PD ITF+G+L  CS+ G V+EG+E F  M S+Y + 
Sbjct: 272 GYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVD 331

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
           P  +HY C+VDL GRAGKL +A+ +I N    +D ++W  LLG+C+ H+N+++ EIA K 
Sbjct: 332 PKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKK 391

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV- 442
           L+QLE  +AG Y+LL+ +Y+     + V   RK +++  ++ +PG SWIE+  +VH F  
Sbjct: 392 LLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSG 451

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
               SHP+ +MI +KL ++    +  GY  D S V       E     S   HSEKLA+A
Sbjct: 452 GGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKV--HSLRDHSEKLAVA 509

Query: 503 FGLATTPDGTSLRIVKNLRSIAYS------------RDLIVRDRVRYHHFRDGLCSCGD 549
           +GL   P+G  +R++KNLR    S            R++I+RD  R+HHF+DGLCSC D
Sbjct: 510 YGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 126/313 (40%), Gaps = 42/313 (13%)

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV---- 186
           M GY  N     AR +FD MPE + +SWN ++S Y Q     EA K++++M   +V    
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWT 60

Query: 187 -GLDGFTLVCLL----------------SSCAHVGAL--NMGIFLHRIACEMGFVESVYV 227
             + G+    L+                S    +G L  +  +   R   +M  V+ V  
Sbjct: 61  AMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVA 120

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG-------------YGVHGRGDE 274
              ++D     G L  A  +F  M +R+V++W SMI G             Y   G   E
Sbjct: 121 STNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELE 180

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A++ F  M   G  P   + + +L  C     ++ G +  H  + R      I     L+
Sbjct: 181 ALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQ-VHSQLVRSQFDIDIYVSSVLI 239

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--A 392
            +Y + G L  A  V +  S  D V+W +++     H     GE A++    + ++S   
Sbjct: 240 TMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHG---FGEKALEVFHDMFSSSIAP 296

Query: 393 GDYVLLATIYACT 405
            +   +  + AC+
Sbjct: 297 DEITFIGVLSACS 309


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  344 bits (882), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 298/528 (56%), Gaps = 38/528 (7%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           W ++I  ++Q     +A+  +  M+ +  S P+  T    L AC  + A ++  E+H + 
Sbjct: 331 WTAVIAGYSQRGCSHEALNVFRQMIFSG-SLPNCVTIISVLSACASLGAFSQGMEIHAYS 389

Query: 116 IRS----------GYERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIIS 163
           +++          G +  ++V   L+  Y+     +AARS+FD++P  ER++V+W  +I 
Sbjct: 390 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 449

Query: 164 CYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
            + Q     +ALKL+  M  E  G+  + +T+ C+L +CAH+ A+ +G  +H        
Sbjct: 450 GHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQ 509

Query: 222 VES--VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
            +S   +V N L++MY+KCG++D+A  VF  M ++  +SW SM+ GYG+HGRG EA+  F
Sbjct: 510 YDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIF 569

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
            +M  AGF PD ITFL +L  CSH G+V++G+ YF  M + Y L P  +HY   +DL  R
Sbjct: 570 DKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLAR 629

Query: 340 AGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
            G+L+KA + +    P +P  V+W  LL +C++H NVE+ E A+  LV++ A + G Y L
Sbjct: 630 FGRLDKAWKTVK-DMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 688

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           ++ IYA     + VAR R L+K +GIK  PG SW++       F V D+SHP +  IY  
Sbjct: 689 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYAL 748

Query: 458 LEEIMHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           LE ++ R K +GY  +   +L  V      + L +    HSEKLA+A+GL TT  G  +R
Sbjct: 749 LESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVE----HSEKLALAYGLLTTFPGCPIR 804

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           I KNLR            S     +++VRD  R+HHF++G CSCG YW
Sbjct: 805 ITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 141/288 (48%), Gaps = 10/288 (3%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           YA L+  ++       WN LIR   +      AI     ML A  +R D FT    LKAC
Sbjct: 69  YALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG-TRLDHFTLPHVLKAC 127

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER---DLV 156
             + +       HG +  +G+E  V +   L+  Y+  G +E A  +FD + +R   D++
Sbjct: 128 GELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 187

Query: 157 SWNSIISCYTQASFHLEALKLYERMRF------EDVGLDGFTLVCLLSSCAHVGALNMGI 210
           SWNSI+S + ++S    AL L+ +M         +   D  ++V +L +C  + A+    
Sbjct: 188 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 247

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H  A   G    V+VGNAL+D YAKCG +++A  VF+ M  +DV+SWN+M+ GY   G
Sbjct: 248 EVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 307

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
               A   FK M       D +T+  ++ G S +G   E +  F  M+
Sbjct: 308 NFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 355



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 113/250 (45%), Gaps = 10/250 (4%)

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           + T ++  Y A G  + A  V + +     V WN +I  + +      A+ +  RM    
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
             LD FTL  +L +C  + +   G   H + C  GF  +V++ NALV MY++CG+L+ A 
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 172

Query: 246 CVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQM-LMAGFHP-----DSITFLG 296
            +F  + +R   DV+SWNS++  +        A+  F +M L+    P     D I+ + 
Sbjct: 173 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 232

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
           +L  C     V +  E  H    R      +     L+D Y + G +E A++V N     
Sbjct: 233 ILPACGSLKAVPQTKE-VHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 357 DPVLWRTLLG 366
           D V W  ++ 
Sbjct: 292 DVVSWNAMVA 301



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 4/150 (2%)

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F+    +G  +V  Y  CG  D A  V  R+     + WN +I  +   GR D AI+   
Sbjct: 47  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 106

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML AG   D  T   +L  C        G   FH ++     +  +     LV +Y R 
Sbjct: 107 RMLRAGTRLDHFTLPHVLKACGELPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRC 165

Query: 341 GKLEKA---LEVINTSSPSDPVLWRTLLGS 367
           G LE+A    + I      D + W +++ +
Sbjct: 166 GSLEEASMIFDEITQRGIDDVISWNSIVSA 195


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  344 bits (882), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 184/511 (36%), Positives = 297/511 (58%), Gaps = 18/511 (3%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           ++N +I    ++  P +A+   + M+   +   D  T+      C  +K L    ++H  
Sbjct: 197 SYNIIINGLLENGYPSEALEVLDRMVDECIVW-DNVTYVTAFGLCSHLKDLRLGLQVHCR 255

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           + R+G E    VS+ ++  Y   G I  AR VF+ +  +++VSW +I++ Y+Q     EA
Sbjct: 256 MFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEA 315

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L  +  M  + +  + +T   LL+SCA + AL  G  LH    + GF + + VGNAL++M
Sbjct: 316 LNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINM 375

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y+K G++++A  VF  M  RD ++W++MI G   HG G EA+  F++ML A   P  +TF
Sbjct: 376 YSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTF 435

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           +G+L  C+H G V+EG  Y + ++ +  ++PG++HY C+V L  +AG+L++A E    S+
Sbjct: 436 VGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEA-ENFMKST 494

Query: 355 PS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           P   D V WRTLL +C +H+N  +G+   + ++Q++    G Y+LL+ +YA  K  +GV 
Sbjct: 495 PVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVV 554

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           + RKL++   +K  PG SWIEI N +H FV + K+HP+++ IY K++E++   + +GY  
Sbjct: 555 KIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVP 614

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           D  + AV     ++   +  +YHSEKLAIA+GL  TP G  +R++KNLR           
Sbjct: 615 D--IAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKL 672

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S   +R +IVRD  R+H F DG CSC DYW
Sbjct: 673 ISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 206/428 (48%), Gaps = 13/428 (3%)

Query: 6   HARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
           HA  +  N+A + + +    L+N YA      +  A++LF+ ++     +W +L+  +  
Sbjct: 48  HAHLIITNQATKDNIVQVNSLINLYA--KCDQIMVARILFDGMRKRNVVSWGALMAGYFH 105

Query: 66  SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV 125
           +   L+ +  +  M+     RP+ + F   + +C     + +  + HG+ ++SG      
Sbjct: 106 NGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQY 165

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           V   L+  Y+    ++ A SV+  +P  D+ S+N II+   +  +  EAL++ +RM  E 
Sbjct: 166 VKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDEC 225

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           +  D  T V     C+H+  L +G+ +H      G     +V +A++DMY KCGN+ +A 
Sbjct: 226 IVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNAR 285

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF+R++ ++V+SW +++  Y  +G  +EA++FF +M + G  P+  TF  LL  C+   
Sbjct: 286 KVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGIS 345

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +  G +  H  + +   +  I     L+++Y ++G +E A +V       D + W  ++
Sbjct: 346 ALGHG-KLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMI 404

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDY--VLLATIYACT---KDEEGVARTRKLIKS 420
                H    +G  A+    ++ AA    +    +  + AC      +EG     +L+K 
Sbjct: 405 CGLSHH---GLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQ 461

Query: 421 NGIKTTPG 428
            GI+  PG
Sbjct: 462 TGIE--PG 467



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 196 LLSSCAHVGALNMG--IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
           LL   A    L  G  I  H I       +++   N+L+++YAKC  +  A  +F  MRK
Sbjct: 31  LLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRK 90

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF-HPDSITFLGLLCGCSHQGLVEEGVE 312
           R+V+SW +++ GY  +G   E +  FK M+   +  P+   F  ++  CS  G V EG +
Sbjct: 91  RNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQ 150

Query: 313 YFHMMVSRYNLKPGIKHY----GCLVDLYGRAGKLEKALEV 349
                   Y LK G+  +      L+ +Y R   ++ A+ V
Sbjct: 151 -----CHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSV 186


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  343 bits (881), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 184/479 (38%), Positives = 275/479 (57%), Gaps = 17/479 (3%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           +  T+   L       +L + + +H  V  +G E  V+V T L+  Y     +E AR+ F
Sbjct: 9   NKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAF 68

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGA 205
           + +   ++VSW+++++ Y Q      AL+LY  M     G+  +  T + LL +C+ +GA
Sbjct: 69  EKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGA 128

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H    E GF   + V NALV+ Y +CG+L  A  VF  MR+RDV+SW+SMI  
Sbjct: 129 LAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISA 188

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           +   GR DEA+  + +ML  G  PD I F+ +L  CS+ G+VE   ++F  +V    ++P
Sbjct: 189 FAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEP 248

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            ++HY C+VD+ GRAGKL  A +++        P+L+ T+L +CK++ +VE GE A + +
Sbjct: 249 TLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVV 308

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
            +L+  ++  Y+ LA IY+  K  +  AR RKL++  GIK  PG SWIE+ ++VH+F+  
Sbjct: 309 FELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAG 368

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           DK HP  D IY +++ +  + K  GY +D  +V       ED  E    YHSEKLAIAFG
Sbjct: 369 DKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVL--QDVEEDEKENLLWYHSEKLAIAFG 426

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L +TP G  LRIVKNLR            S    R+++VRD  R+HHF DG+CSC DYW
Sbjct: 427 LISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCSCNDYW 485



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 116/245 (47%), Gaps = 6/245 (2%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           G + H+R  G     +   I G  L+N Y      S+  A+  F +I  P   +W++++ 
Sbjct: 29  GRRVHSRVAG--AGLEVDVIVGTALVNMYG--KCQSVEEARAAFEKISRPNVVSWSAMLA 84

Query: 62  AFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
           A+AQ+     A+  Y  M  A     P+  TF   L AC  + AL + +++H  V   G+
Sbjct: 85  AYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGF 144

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           +  +VV   L+  Y   G +  A+ VFD M  RD++SW+S+IS + Q     EA++LY R
Sbjct: 145 DTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHR 204

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNM-GIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           M  E    D    + +L +C++ G +   G F   I  +     ++     +VD+  + G
Sbjct: 205 MLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAG 264

Query: 240 NLDSA 244
            L  A
Sbjct: 265 KLRDA 269



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 6/228 (2%)

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M    V  +  T V +LS     G+L  G  +H      G    V VG ALV+MY KC +
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA--GFHPDSITFLGLL 298
           ++ A   F ++ + +V+SW++M+  Y  +G    A+  +++M  A  G  P+ +TF+ LL
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             CS  G + EG    H  V+       +     LV+ YGR G L  A  V +     D 
Sbjct: 121 DACSFLGALAEG-RKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDV 179

Query: 359 VLWRTLLGS-CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           + W +++ +  +  R  E  E+  + L   E     D + ++ ++AC+
Sbjct: 180 ISWSSMISAFAQRGRVDEAMELYHRMLS--EGTLPDDIIFISVLFACS 225


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 298/528 (56%), Gaps = 38/528 (7%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           W ++I  ++Q     +A+  +  M+ +  S P+  T    L AC  + A ++  E+H + 
Sbjct: 224 WTAVIAGYSQRGCSHEALNVFRQMIFSG-SLPNCVTIISVLSACASLGAFSQGMEIHAYS 282

Query: 116 IRS----------GYERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIIS 163
           +++          G +  ++V   L+  Y+     +AARS+FD++P  ER++V+W  +I 
Sbjct: 283 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 342

Query: 164 CYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
            + Q     +ALKL+  M  E  G+  + +T+ C+L +CAH+ A+ +G  +H        
Sbjct: 343 GHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQ 402

Query: 222 VES--VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
            +S   +V N L++MY+KCG++D+A  VF  M ++  +SW SM+ GYG+HGRG EA+  F
Sbjct: 403 YDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIF 462

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
            +M  AGF PD ITFL +L  CSH G+V++G+ YF  M + Y L P  +HY   +DL  R
Sbjct: 463 DKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLAR 522

Query: 340 AGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
            G+L+KA + +    P +P  V+W  LL +C++H NVE+ E A+  LV++ A + G Y L
Sbjct: 523 FGRLDKAWKTVK-DMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 581

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           ++ IYA     + VAR R L+K +GIK  PG SW++       F V D+SHP +  IY  
Sbjct: 582 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYAL 641

Query: 458 LEEIMHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           LE ++ R K +GY  +   +L  V      + L +    HSEKLA+A+GL TT  G  +R
Sbjct: 642 LESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVE----HSEKLALAYGLLTTFPGCPIR 697

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           I KNLR            S     +++VRD  R+HHF++G CSCG YW
Sbjct: 698 ITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 124/243 (51%), Gaps = 9/243 (3%)

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
           +R D FT    LKAC  + +       HG +  +G+E  V +   L+  Y+  G +E A 
Sbjct: 6   TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 65

Query: 145 SVFDNMPER---DLVSWNSIISCYTQASFHLEALKLYERMRF------EDVGLDGFTLVC 195
            +FD + +R   D++SWNSI+S + ++S    AL L+ +M         +   D  ++V 
Sbjct: 66  MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 125

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L +C  + A+     +H  A   G    V+VGNAL+D YAKCG +++A  VF+ M  +D
Sbjct: 126 ILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 185

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           V+SWN+M+ GY   G    A   FK M       D +T+  ++ G S +G   E +  F 
Sbjct: 186 VVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFR 245

Query: 316 MMV 318
            M+
Sbjct: 246 QMI 248


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 190/525 (36%), Positives = 301/525 (57%), Gaps = 19/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+++F+ + +    +W S+I  +AQ+   ++A+  ++ M    + +PD       L+A  
Sbjct: 208 AKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGV-KPDWIALVSILRAYT 266

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            V  L + + +HGFVI+ G E    +  +L   YA  G++  A+S FD M   +++ WN+
Sbjct: 267 DVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNA 326

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y +     EA+ L+  M   ++  D  T+   + + A VG+L +  ++     +  
Sbjct: 327 MISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSN 386

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +   ++V  +L+DMYAKCG+++ A  VF R   +DV+ W++MI+GYG+HG+G EAI+ + 
Sbjct: 387 YGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYH 446

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            M  AG  P+ +TF+GLL  C+H GLV+EG E FH M   + + P  +HY C+VDL GRA
Sbjct: 447 VMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLGRA 505

Query: 341 GKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G L +A   I    P +P   +W  LL +CKI+R V +GE A   L  L+  + G YV L
Sbjct: 506 GYLGEACAFI-MKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQL 564

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + +YA +   + VA  R L++  G+    G+S IEI  ++  F V DKSHP A  I+ +L
Sbjct: 565 SNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDEL 624

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           + +  R K +G+      V    +  E   E++ ++HSE++A+A+GL +T  GT+LRI K
Sbjct: 625 QRLERRLKEVGFVPYTESVLHDLNYEEK--EENLSFHSERIAVAYGLISTAPGTTLRITK 682

Query: 519 NLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR+                R++IVRD  R+HHF+DGLCSCGDYW
Sbjct: 683 NLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 167/334 (50%), Gaps = 2/334 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           + YA+ LF++   P    WN++IR+++++      +  Y  M    +  PD FTF + LK
Sbjct: 104 ICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGV-HPDGFTFPYVLK 162

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  +        +HG +I+ G+   V V   L+  YA  G I  A+ VFD +  R +VS
Sbjct: 163 ACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVS 222

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W SIIS Y Q    +EAL+++ +MR   V  D   LV +L +   V  L  G  +H    
Sbjct: 223 WTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVI 282

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +MG  +   +  +L   YAKCG +  A   F +M+  +V+ WN+MI GY  +G  +EA++
Sbjct: 283 KMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVN 342

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F  M+     PDS+T    +   +  G +E   ++    VS+ N    I     L+D+Y
Sbjct: 343 LFHYMISRNIKPDSVTVRSAVLASAQVGSLELA-QWMDDYVSKSNYGSDIFVNTSLIDMY 401

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            + G +E A  V + +S  D V+W  ++    +H
Sbjct: 402 AKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLH 435



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 125/257 (48%), Gaps = 1/257 (0%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
            ++H  ++ SG +    + T L+ G +  G I  AR +FD     D+  WN+II  Y++ 
Sbjct: 73  DQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRN 132

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
           + + + +++Y  MR+  V  DGFT   +L +C  +    +   +H    + GF   V+V 
Sbjct: 133 NMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQ 192

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N LV +YAKCG++  A  VF  +  R ++SW S+I GY  +G+  EA+  F QM   G  
Sbjct: 193 NGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVK 252

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           PD I  + +L   +    +E+G    H  V +  L+        L   Y + G +  A  
Sbjct: 253 PDWIALVSILRAYTDVDDLEQG-RSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKS 311

Query: 349 VINTSSPSDPVLWRTLL 365
             +    ++ ++W  ++
Sbjct: 312 FFDQMKTTNVIMWNAMI 328


>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Glycine max]
          Length = 569

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 179/439 (40%), Positives = 264/439 (60%), Gaps = 19/439 (4%)

Query: 127 STNL-MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           S NL +      G  + A+ VF  M  RD+V+WNS+I  Y +     +AL ++ RM    
Sbjct: 136 SMNLVIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRMLSAK 195

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           V  DGFT   ++++CA +GAL    ++H +  E     +  +  AL+DMYAKCG +D + 
Sbjct: 196 VEPDGFTFASVVTACARLGALGNAKWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSR 255

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  + +  V  WN+MI G  +HG   +A   F +M M    PDSITF+G+L  CSH G
Sbjct: 256 QVFEEVARDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVLPDSITFIGILTACSHCG 315

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTL 364
           LVEEG +YF MM +R+ ++P ++HYG +VDL GRAG +E+A  VI       D V+WR L
Sbjct: 316 LVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYAVIKEMRMEPDIVIWRAL 375

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
           L +C+IHR  E+GE+A+ N+ +LE   +GD+VLL+ +Y    + +G  R R+++K+ G++
Sbjct: 376 LSACRIHRKKELGEVAIANISRLE---SGDFVLLSNMYCSLNNWDGAERVRRMMKTRGVR 432

Query: 425 TTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSS 484
            + G SW+E+G+ +H+F    +SHP+   IYR LE ++ RAK  G+T    LV +  S  
Sbjct: 433 KSRGKSWVELGDGIHQFNAAYQSHPEMKSIYRVLEGLIQRAKLEGFTPLTDLVLMDVSEE 492

Query: 485 EDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVR 532
           E   E++  +HSEKLA+A+ +  T  GT +RI KNLR            S   +R +IVR
Sbjct: 493 EK--EENLMFHSEKLAMAYAVLKTSPGTKIRISKNLRICLDCHNWIKIVSKILNRKIIVR 550

Query: 533 DRVRYHHFRDGLCSCGDYW 551
           DR+R+H F  G+CSC DYW
Sbjct: 551 DRIRFHQFEGGVCSCKDYW 569



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 118/242 (48%), Gaps = 6/242 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F ++       WNS+I  + ++L    A+  +  ML A +  PD FTF   + AC 
Sbjct: 153 AKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRMLSAKVE-PDGFTFASVVTACA 211

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R+ AL   + +HG ++    E   ++S  L+  YA  G I+ +R VF+ +    +  WN+
Sbjct: 212 RLGALGNAKWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNA 271

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIACEM 219
           +IS        ++A  ++ RM  E V  D  T + +L++C+H G +  G  +   +    
Sbjct: 272 MISGLAIHGLAMDATLVFSRMEMEHVLPDSITFIGILTACSHCGLVEEGRKYFGMMQNRF 331

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGR---GDEA 275
                +     +VD+  + G ++ A+ V   MR + D++ W +++    +H +   G+ A
Sbjct: 332 MIQPQLEHYGTMVDLLGRAGLMEEAYAVIKEMRMEPDIVIWRALLSACRIHRKKELGEVA 391

Query: 276 IS 277
           I+
Sbjct: 392 IA 393


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 204/556 (36%), Positives = 307/556 (55%), Gaps = 59/556 (10%)

Query: 47  QIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALN 106
           Q +NP    W ++IR +       +AI  Y  M    ++ P +FTF+  LKAC  +  LN
Sbjct: 111 QFRNPFL--WTAVIRGYTIEGKFDEAIAMYGCMRKEEIT-PVSFTFSALLKACGSMGDLN 167

Query: 107 KCQELHGFVIR-SGY------------------------------ERCVVVSTNLMRGYA 135
             ++ H    R  G+                              ER V+  T L+  YA
Sbjct: 168 LGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYA 227

Query: 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
             G +E+A  +F+++P +D+V+W ++++ + Q +   EAL+ ++RM    +  D  T+  
Sbjct: 228 RVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAG 287

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVES--VYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
            +S+CA +GA        +IA + G+  S  V +G+AL+DMY+KCGN++ A  VF  M  
Sbjct: 288 YISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNN 347

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           ++V S++SMI+G   HGR  EA+  F  M+      P+++TF+G L  CSH GLV++G +
Sbjct: 348 KNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQ 407

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS--PSDPVLWRTLLGSCKI 370
            F  M   + ++P   HY C+VDL GRAG+L++ALE+I T S  P   V W  LLG+C+I
Sbjct: 408 VFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGV-WGALLGACRI 466

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS 430
           H N +I EIA ++L +LE    G+Y+LL+ +Y+   D  GV   RKLIK  G+K TP  S
Sbjct: 467 HNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVS 526

Query: 431 WIEIGN-QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA--VSGSSSEDF 487
           W+   N Q+HKF   + +HP +  I  KLEE++ R   +GY  D S V   VS ++    
Sbjct: 527 WVVDKNGQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLI 586

Query: 488 LEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRV 535
           L +    H+EKLA+AF L TT    +++I+KNLR            S    R +I+RD +
Sbjct: 587 LIQ----HTEKLALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNM 642

Query: 536 RYHHFRDGLCSCGDYW 551
           R+HHFR G CSCGD+W
Sbjct: 643 RFHHFRSGACSCGDFW 658



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 126/279 (45%), Gaps = 34/279 (12%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI--EAARSVFDNMPERDLVSWNSII 162
           LN+ +++HG V+R G ++   + T L+R     GV      R V + +  R+   W ++I
Sbjct: 63  LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVI 122

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
             YT      EA+ +Y  MR E++    FT   LL +C  +G LN+G   H     +   
Sbjct: 123 RGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGF 182

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS------------------------ 258
             VYVGN ++DMY KCG++  A  VF  M +RDV+S                        
Sbjct: 183 CFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESL 242

Query: 259 -------WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
                  W +M+ G+  + +  EA+ +F +M  +G   D +T  G +  C+  G  +   
Sbjct: 243 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYAD 302

Query: 312 EYFHM-MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
               +   S Y+    +     L+D+Y + G +E+A+ V
Sbjct: 303 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNV 341



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 5/219 (2%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++  A  LF  +      AW +++  FAQ+  P +A+ Y++ M  + + R D  T    +
Sbjct: 231 NMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI-RADEVTVAGYI 289

Query: 97  KACERVKALNKCQELHGFVIRSGYERC--VVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            AC ++ A            +SGY     VV+ + L+  Y+  G +E A +VF +M  ++
Sbjct: 290 SACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKN 349

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           + S++S+I          EAL L+  M  +  +  +  T V  L++C+H G ++ G  + 
Sbjct: 350 VFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVF 409

Query: 214 RIACEMGFVESVYVG-NALVDMYAKCGNLDSAFCVFSRM 251
               +   VE        +VD+  + G L  A  +   M
Sbjct: 410 ASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTM 448


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/528 (35%), Positives = 288/528 (54%), Gaps = 25/528 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++ A+ LF+++      +W ++I  +AQ+             L   +   +  ++T  L 
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQN-----GEVNLARKLFEVMPERNEVSWTAMLV 244

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
              +   +    EL      +  E  V     +M G+   G+++AA++VF+ M ERD  +
Sbjct: 245 GYIQAGHVEDAAEL----FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGT 300

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W+++I  Y Q  F +EAL  +  M +  V  +  +++ +L+ CA +  L+ G  +H    
Sbjct: 301 WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
              F   V+  +AL+ MY KCGNLD A  VF     +D++ WNSMI GY  HG G++A+ 
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F  M +AG  PD IT++G L  CS+ G V+EG E F+ M    +++PG +HY C+VDL 
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLL 480

Query: 338 GRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GR+G +E+A ++I N     D V+W  L+G+C++HRN EI E+A K L++LE  +AG YV
Sbjct: 481 GRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYV 540

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK-SHPDADMIY 455
           LL+ IY      E  ++ RK I S  +  +PG SWIE   +VH F   D  +HP+   I 
Sbjct: 541 LLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAIL 600

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           R LE++       GY+ D S V       E+    S  YHSE+ A+A+GL   P+G  +R
Sbjct: 601 RILEKLDGLLMESGYSADGSFVL--HDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIR 658

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++KNLR            +   SR++++RD  R+HHF+DG CSC DYW
Sbjct: 659 VMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 192/423 (45%), Gaps = 61/423 (14%)

Query: 44  LFNQIQNPQTQAWNSLIRAFA---QSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKAC 99
           LF ++ +    ++N+LI   +   Q+L    A        +AS+   P   +FT  L+  
Sbjct: 70  LFRRMPSRDLASYNALISGLSLRRQTLPDAAAA-------LASIPFPPSVVSFTSLLRGY 122

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
            R   L     L     +   ER  V  T L+ G    G +  AR +FD MP+RD+V+W 
Sbjct: 123 VRHGLLADAIRL----FQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWT 178

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE- 218
           +++S Y QA    EA  L++ M   +V     +   ++S  A  G +N+   L  +  E 
Sbjct: 179 AMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPER 234

Query: 219 ---------MGFVESVYVG-----------------NALVDMYAKCGNLDSAFCVFSRMR 252
                    +G++++ +V                  NA++  + + G +D+A  VF +MR
Sbjct: 235 NEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMR 294

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           +RD  +W++MI  Y  +    EA+S F++ML  G  P+  + + +L  C+   +++ G E
Sbjct: 295 ERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE 354

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372
             H  + R +    +     L+ +Y + G L+KA  V +T  P D V+W +++     H 
Sbjct: 355 -VHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQH- 412

Query: 373 NVEIGEIAMKNL--VQLEAASAGDYVLLATIYACT---KDEEGVARTRKLIKSNGIKTT- 426
              +GE A+     ++L   S      +  + AC+   K +EG    R++  S  + ++ 
Sbjct: 413 --GLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEG----REIFNSMTVNSSI 466

Query: 427 -PG 428
            PG
Sbjct: 467 RPG 469



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 44/229 (19%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM------ 282
           NA +   A+ GN++ A   F  M  R   S+N+++ GY  +   D A+  F++M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 283 ----LMAG-------------------FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
               L++G                   F P  ++F  LL G    GL+ + +  F  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVE--- 375
           R ++      Y  L+     AG++ +A  + +     D V W  +L G C+  R  E   
Sbjct: 141 RNHVS-----YTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARA 195

Query: 376 -IGEIAMKNLVQLEA-----ASAGDYVLLATIYACTKDEEGVARTRKLI 418
              E+  +N+V   A     A  G+  L   ++    +   V+ T  L+
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLV 244



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 11/132 (8%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L  A+ +F+  +      WNS+I  +AQ     QA+  ++ M +A +S PD  T+   L
Sbjct: 383 NLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMS-PDGITYIGAL 441

Query: 97  KACERVKALNKCQELHGFV-----IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
            AC     + + +E+   +     IR G E    +   L R    +G++E A  +  NMP
Sbjct: 442 TACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGR----SGLVEEAFDLIKNMP 497

Query: 152 -ERDLVSWNSII 162
            E D V W +++
Sbjct: 498 VEPDAVIWGALM 509


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/527 (35%), Positives = 295/527 (55%), Gaps = 16/527 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++ A+ LF  I+   +  W +++    Q+    +A+  +  M    +   D +TF   L 
Sbjct: 227 VAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVG-IDQYTFGSILT 285

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  + AL + +++H ++ R+ YE  V V + L+  Y+    +  A +VF  M  ++++S
Sbjct: 286 ACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIIS 345

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++I  Y Q     EA++++  M+ + +  D FTL  ++SSCA++ +L  G   H +A 
Sbjct: 346 WTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLAL 405

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             G    V V NALV +Y KCG+++ A  +F  M   D +SW ++++GY   G+  E I 
Sbjct: 406 VSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETID 465

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++ML  G  PD +TF+G+L  CS  GLV++G  YFH M   +++ P   HY C++DLY
Sbjct: 466 LFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLY 525

Query: 338 GRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            R+G L++A E I       D   W TLL +C++  ++EIG+ A +NL++L+  +   YV
Sbjct: 526 SRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYV 585

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL +++A   +   VA+ R+ ++   +K  PG SWI+  N+VH F  DD+SHP +  IY 
Sbjct: 586 LLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYE 645

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
           KL+ +  +    GY  D S V    + +E     S  +HSEKLAIAFGL   P    +RI
Sbjct: 646 KLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLS--HHSEKLAIAFGLIFVPPEMPIRI 703

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           VKNLR            S    RD++VRD VR+H F +G+CSCGD+W
Sbjct: 704 VKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 190/396 (47%), Gaps = 36/396 (9%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           GL  HAR V  +     + + G  LL+  A++ +  +   + LF  +      ++N+L+ 
Sbjct: 60  GLLPHARRV-FDAMPGRNLVTGNSLLS--ALARAGLVRDMERLFTSLPQRDAVSYNALLA 116

Query: 62  AFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
            F+++ +  +A   Y  +L      RP   T +  +     +      +++H  ++R G+
Sbjct: 117 GFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGF 176

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMP----------------------------- 151
                  + L+  YA  G I  AR VFD M                              
Sbjct: 177 GAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEA 236

Query: 152 --ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
             ERD ++W ++++  TQ     EAL ++ RMR E VG+D +T   +L++C  + AL  G
Sbjct: 237 IEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEG 296

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H       + ++V+VG+ALVDMY+KC ++  A  VF RM  ++++SW +MIVGYG +
Sbjct: 297 KQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQN 356

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G G+EA+  F +M   G  PD  T   ++  C++   +EEG + FH +     L+P +  
Sbjct: 357 GCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTV 415

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
              LV LYG+ G +E A  + +  S  D V W  L+
Sbjct: 416 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALV 451



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 143/361 (39%), Gaps = 71/361 (19%)

Query: 111 LHGFVIRS-GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           +H  ++R+  +     +   L+  YA++G++  AR VFD MP R+LV+ NS++S   +A 
Sbjct: 32  VHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAG 91

Query: 170 FHLEALKLYERMRFEDVG-----LDGFTL-----------VCLLSSCAHV---------- 203
              +  +L+  +   D       L GF+            V LL   A V          
Sbjct: 92  LVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGV 151

Query: 204 -------GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---- 252
                  G   +G  +H     +GF    + G+ LVDMYAK G +  A  VF  M     
Sbjct: 152 VMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNV 211

Query: 253 ---------------------------KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
                                      +RD ++W +M+ G   +G   EA+  F++M   
Sbjct: 212 VMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAE 271

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
           G   D  TF  +L  C     +EEG +  H  ++R   +  +     LVD+Y +   +  
Sbjct: 272 GVGIDQYTFGSILTACGALAALEEGKQ-IHAYITRTCYEDNVFVGSALVDMYSKCRSVRL 330

Query: 346 ALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIYA 403
           A  V       + + W  ++     +     GE A++  + +Q +     D+ L + I +
Sbjct: 331 AEAVFRRMMWKNIISWTAMIVG---YGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISS 387

Query: 404 C 404
           C
Sbjct: 388 C 388



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 16/168 (9%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  A  LF+++      +W +L+  +AQ     + I  +  ML   + +PD  TF   L
Sbjct: 428 SIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGV-KPDGVTFIGVL 486

Query: 97  KACERVKALNK-------CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
            AC R   ++K        Q+ H  V    +  C++   +L   Y+ +G ++ A      
Sbjct: 487 SACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMI---DL---YSRSGWLKQAEEFIKQ 540

Query: 150 MPE-RDLVSWNSIIS-CYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
           MP   D   W +++S C  +    +        ++ +      + L+C
Sbjct: 541 MPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLC 588


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/529 (36%), Positives = 296/529 (55%), Gaps = 26/529 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F  I +     W+ LI  +AQS    QA   +  M+ +S+  P+ F+ +  L+AC 
Sbjct: 305 ARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVV-PNEFSLSGVLQACA 363

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            V  L+  Q++H  VI+ GYE  + V   LM  YA    +E +  +F ++ + + VSWN+
Sbjct: 364 NVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNT 423

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           II  Y Q+ F  +AL +++ MR   V     T   +L +CA+  ++   + +H +  +  
Sbjct: 424 IIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKST 483

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F     V N+L+D YAKCG +  A  VF  + + DV+SWN++I GY +HGR  +A+  F 
Sbjct: 484 FNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFN 543

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M  +   P+ +TF+ LL  C   GLV +G+  F+ M   + +KP + HY C+V L GRA
Sbjct: 544 RMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRA 603

Query: 341 GKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G+L  AL+ I    S+PS P++WR LL SC +H+NV +G+ + + ++++E      YVLL
Sbjct: 604 GRLNDALKFIGDIPSTPS-PMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLL 662

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + +YA     + VA  RK +++ G+K   G SW+EI  +VH F V    HPD  +I   L
Sbjct: 663 SNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAML 722

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA----YHSEKLAIAFGLATTPDGTSL 514
           E +  +A   GY  D ++V        D  E+  A     HSE+LA+A+GL+ TP G  +
Sbjct: 723 EWLNLKASREGYVPDINVVL------HDVDEEEKARMLWVHSERLALAYGLSMTPPGHPI 776

Query: 515 RIVKNLRSI------------AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI+KNLRS                R+++VRD  R+HHF +G+CSCGDYW
Sbjct: 777 RIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 120/485 (24%), Positives = 242/485 (49%), Gaps = 19/485 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+++Y  S+  ++S+A+ +F+ I       W +++  ++++  P  A+  ++ M MA
Sbjct: 188 GSSLIDAY--SLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMA 245

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
             ++P+ F  T  LKA   + +    + +HG  +++  +    V   L+  YA  G IE 
Sbjct: 246 G-AKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIED 304

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR+VF+ +P  D++ W+ +IS Y Q+  + +A +++ RM    V  + F+L  +L +CA+
Sbjct: 305 ARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACAN 364

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           V  L++G  +H +  ++G+   ++VGNAL+D+YAKC N++++  +F  +R  + +SWN++
Sbjct: 365 VAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTI 424

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           IVGY   G  ++A+S F++M  A      +TF  +L  C++   ++  V+  H ++ +  
Sbjct: 425 IVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQ-IHSLIEKST 483

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
                     L+D Y + G +  AL+V  +    D V W  ++    +H       + + 
Sbjct: 484 FNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRAT-DALELF 542

Query: 383 NLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTTPG-WSWIE--IG- 435
           N +        D   +A +  C       +G++    +   + IK +   ++ I   +G 
Sbjct: 543 NRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGR 602

Query: 436 ----NQVHKFVVDDKSHPDADMIYRKLEE--IMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
               N   KF+ D  S P + M++R L    ++H+   +G    E ++ +       ++ 
Sbjct: 603 AGRLNDALKFIGDIPSTP-SPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVL 661

Query: 490 KSSAY 494
            S+ Y
Sbjct: 662 LSNMY 666



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 174/373 (46%), Gaps = 13/373 (3%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           G   HAR V      Q        LLN YA      L+ A+ LF+ +      ++ +L++
Sbjct: 66  GRAVHARVVQRGGVAQLDTFCANVLLNLYA--KLGPLAAARRLFDGMPERNMVSFVTLVQ 123

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRP----DTFTFTFTLKACERVKALNKCQELHGFVIR 117
            +A     L+  F     L   L R     + F  T  LK    + A      +H    +
Sbjct: 124 GYA-----LRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACK 178

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177
            G++R   V ++L+  Y+  G +  AR VFD +  +D V+W +++SCY++     +AL  
Sbjct: 179 LGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNT 238

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
           + +MR      + F L  +L +   + +  +G  +H  A +       +VG AL+DMYAK
Sbjct: 239 FSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAK 298

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
           CG ++ A  VF  +   DV+ W+ +I  Y    + ++A   F +M+ +   P+  +  G+
Sbjct: 299 CGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGV 358

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           L  C++   ++ G +  H +V +   +  +     L+D+Y +   +E +LE+  +   ++
Sbjct: 359 LQACANVAFLDLG-QQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDAN 417

Query: 358 PVLWRTLL-GSCK 369
            V W T++ G C+
Sbjct: 418 EVSWNTIIVGYCQ 430


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/553 (34%), Positives = 297/553 (53%), Gaps = 21/553 (3%)

Query: 14  KARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAI 73
           + R+ + +    L+N Y    +  L  A+ +F+++ + +   WN++I    Q     + +
Sbjct: 19  RMRKKNFMSSNILINGYV--RAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGL 76

Query: 74  FYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRG 133
             +  M     S PD +T          +++++  Q++HG+ I+ G E  +VV+++L   
Sbjct: 77  SLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHM 135

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           Y  NG ++    V  +MP R+LV+WN++I    Q       L LY+ M+      +  T 
Sbjct: 136 YMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITF 195

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
           V +LSSC+ +     G  +H  A ++G    V V ++L+ MY+KCG L  A   FS    
Sbjct: 196 VTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERED 255

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
            D + W+SMI  YG HG+GDEAI  F  M        + + FL LL  CSH GL ++G+E
Sbjct: 256 EDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLE 315

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKI 370
            F MMV +Y  KPG+KHY C+VDL GRAG L++A E I  S P   DPV+W+TLL +C I
Sbjct: 316 LFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQA-EAIIKSMPIKPDPVIWKTLLSACNI 374

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS 430
           H+N E+ +   K +++++   +  YVLLA ++A  K    V+  RK ++   +K   G S
Sbjct: 375 HKNAEMAQKVFKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGIS 434

Query: 431 WIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEK 490
           W E   +VH+F + D+S   +  IY  L+E+    K  GY  D +  +V     E+  E 
Sbjct: 435 WFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTA--SVLHDMDEEEKES 492

Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYH 538
               HSEKLA+AF L   P+G  +RI+KNLR            S+  +R++ +RD  R+H
Sbjct: 493 DLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFH 552

Query: 539 HFRDGLCSCGDYW 551
           HF +G CSCGDYW
Sbjct: 553 HFINGKCSCGDYW 565



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 32/165 (19%)

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLS-------------------------------WN 260
           + MY+K G+L SA  ++ RMRK++ +S                               WN
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWN 60

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           +MI G       +E +S F++M   GF PD  T   +  G +    V  G +  H    +
Sbjct: 61  AMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIG-QQIHGYAIK 119

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           Y L+  +     L  +Y R GKL+    VI +    + V W TL+
Sbjct: 120 YGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 164


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 198/570 (34%), Positives = 307/570 (53%), Gaps = 37/570 (6%)

Query: 11  GLNKARQAHEIHGEWLLNSYA--ISVSSSL----------SYAQLLFNQIQNPQTQAWNS 58
            L   R   E+HG  +   +   +SV++SL            A+++F++++     +W +
Sbjct: 308 ALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTA 367

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           +I  + ++  P +A+  Y  M    +  PD  T    L AC  +  L+K   LH F  R+
Sbjct: 368 MISGYEKNGLPEKAVETYTIMEHEGVV-PDEITIASVLSACAGLGLLDKGIMLHEFADRT 426

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G    V+V+ +L+  Y+    I+ A  VF  +P ++++SW SII          EAL  +
Sbjct: 427 GLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFF 486

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
           ++M    +  +  TLV +LS+CA +GAL+ G  +H  A   G     ++ NAL+DMY +C
Sbjct: 487 QQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRC 545

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G ++ A+  F+   K DV SWN ++ GY   G+G  A+  F +M+ +  +PD ITF  LL
Sbjct: 546 GRMEPAWNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLL 604

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSD 357
           C CS  G+V +G+EYF  M  ++++ P +KHY  +VDL GRAG+LE A E I       D
Sbjct: 605 CACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPD 664

Query: 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
           P +W  LL +C+I++NVE+GE+A +++ +++  S G Y+LL  +YA +   + VAR RK+
Sbjct: 665 PAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKI 724

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDES 475
           ++ N +   PG SW+E+  QVH F+  D  HP    I   LE    + +  G   +KD  
Sbjct: 725 MRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSR 784

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
              +  S +E F       HSE+LAIAFGL  T  GT + + KNL             S 
Sbjct: 785 RDDIDASKAEIF-----CGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISK 839

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGD--YW 551
              R + VRD  ++HHF+DG+CSCGD  YW
Sbjct: 840 VVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 204/393 (51%), Gaps = 8/393 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F ++      +WN L+  +A++    +A+  Y+ ML   + RPD +TF   L+
Sbjct: 145 LVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGI-RPDVYTFPCVLR 203

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C  +  L + +E+H  VIR G+E  V V   L+  Y   G I +AR VFD MP RD +S
Sbjct: 204 TCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRIS 263

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++IS Y +    LE L+L+  MR   V  D  T+  ++S+C  +G   +G  +H    
Sbjct: 264 WNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVI 323

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + GFV  V V N+L+ M++  G  D A  VFS+M  +D++SW +MI GY  +G  ++A+ 
Sbjct: 324 KTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVE 383

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            +  M   G  PD IT   +L  C+  GL+++G+   H    R  L   +     L+D+Y
Sbjct: 384 TYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI-MLHEFADRTGLTSYVIVANSLIDMY 442

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI-HRNVEIGEIAMKNLVQLEAASAGDYV 396
            +   ++KALEV +     + + W +++   ++ +R+ E      + ++ L+  S     
Sbjct: 443 SKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSV---T 499

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           L++ + AC +   G     K I ++ ++T  G+
Sbjct: 500 LVSVLSACARI--GALSCGKEIHAHALRTGLGF 530



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 145/317 (45%), Gaps = 7/317 (2%)

Query: 49  QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKC 108
           QNP     NSLI          +A+ + + M    +S  +  T+   L+ CE  +A ++ 
Sbjct: 60  QNP-----NSLILELCLKGDLEKALIHLDSMQELQVSVEEE-TYIALLRLCEWKRAASEG 113

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
             +H +V ++     V +   L+  +   G +  A  VF  M ERDL SWN ++  Y +A
Sbjct: 114 SRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKA 173

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
            +  EAL LY RM +  +  D +T  C+L +C  +  L  G  +H      GF   V V 
Sbjct: 174 GYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVV 233

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           NAL+ MY KCG++ SA  VF RM +RD +SWN+MI GY  +    E +  F  M      
Sbjct: 234 NALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVD 293

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           PD +T   ++  C   G    G E  H  V +      +     L+ ++   G  ++A  
Sbjct: 294 PDLMTMTSVISACEALGDERLGRE-VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEM 352

Query: 349 VINTSSPSDPVLWRTLL 365
           V +     D V W  ++
Sbjct: 353 VFSKMEFKDLVSWTAMI 369


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 210/598 (35%), Positives = 318/598 (53%), Gaps = 64/598 (10%)

Query: 11  GLNKARQAHEIHGEWLLNSYAISVSSSLSYAQL--------------LFNQIQNPQTQ-- 54
           G N  R+   +HG  L+  Y   VS+ L  + +              +FN I   Q    
Sbjct: 177 GSNCLRRGSAVHG--LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVV 234

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLS--RPDTFTFTFTLKACERVKALNKCQELH 112
           +WNSLI  F  +    +A+  +  M+    S   P+  T    LK+C  +  +     +H
Sbjct: 235 SWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVH 294

Query: 113 GFVIRSG----YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
            ++          + VVV T L+  +A  G +  AR +FD +  +++V W+++I+ Y Q 
Sbjct: 295 EYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQG 354

Query: 169 SFHLEALKLYERMRFE------DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           S   EAL+L+ +M  E      +V  +  TLV ++++C+ +GA      +H+ A   G  
Sbjct: 355 SCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLD 414

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +   + +AL+DM AKCG+++    VFS M +  R V+SW+SMI   G+HG G  A+  F 
Sbjct: 415 QDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFS 474

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M   G+ P+ IT++ +L  CSH GLVE+G   F+ M   Y + P  KHY CLVDL GRA
Sbjct: 475 EMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRA 534

Query: 341 GKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G L++A  VI N    +D  LW +LL +C +H N ++GEI  K ++ L++ S G +VLLA
Sbjct: 535 GHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLA 594

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            +Y      + V R R  ++ +G++  PG S+IEIGN+V+ F+ +D+SHP+++MIY++L+
Sbjct: 595 NMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELD 654

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSED----FLEKSSAYHSEKLAIAFGL---------- 505
            +  R +     K    V  +G + ED     L     YHSE+LAIAFGL          
Sbjct: 655 GLDERVR-----KAAKYVTETGLNVEDGDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCS 709

Query: 506 ATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +    T +RI KNLR            S    R+LIVRD  R+HHFRDG CSCGDYW
Sbjct: 710 CSLRTATPIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 195/406 (48%), Gaps = 33/406 (8%)

Query: 47  QIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALN 106
            I +  T  WNSLI   A   +P  A+ ++  M  A     + FTF   LKAC  ++ L 
Sbjct: 12  SISHKDTFHWNSLIAKNATQ-NPQTALTFFTRM-QAHAVPSNNFTFPALLKACAALRRLL 69

Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER--DLVSWNSIISC 164
              ++H ++ R G       +  L+  Y   G    A  VFD MPE   D+VSW ++IS 
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 165 YTQASFHLEALKLYERMRF-------EDVGLDGFTLVCLLSSCAHVG----ALNMGIFLH 213
           Y+      EA   + RMR+       E  G+D  +L  L+S+CA VG     L  G  +H
Sbjct: 130 YSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACA-VGCGSNCLRRGSAVH 188

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHGR 271
            +  + GF  S ++GN++V MY+ C ++  A+ VF+   + +RDV+SWNS+I G+ ++G 
Sbjct: 189 GLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGE 248

Query: 272 GDEAISFFKQMLMAG---FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN---LKP 325
            + A+  F+ M+  G     P+ +T + LL  C+  G VE        + SR++   +  
Sbjct: 249 AERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAK 308

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-----GSCKIHRNVEIGEIA 380
            +     L+D++ R G L  A E+ +     + V W  ++     GSC         ++ 
Sbjct: 309 DVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQML 368

Query: 381 MK-NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
           M+ N+V +E        L++ I AC++   G +R+  +I    + T
Sbjct: 369 MEGNMVGVE-VKPNAVTLVSVIAACSR--LGASRSASMIHKYAVAT 411


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 191/544 (35%), Positives = 301/544 (55%), Gaps = 33/544 (6%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ Y +  S+ +  A   F  I +P   +W SLI  F++     ++I  +  M   
Sbjct: 355 GNSLVDMY-MKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGV 413

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            + RP++FT +  L AC  +K+L + ++LHG++I++  +  VVV   L+  YA  G+++ 
Sbjct: 414 GV-RPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDD 472

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  V   M  RD++++ S+ +   Q   H  AL +   M  +DV +DGF+L   LS+ A 
Sbjct: 473 AWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAG 532

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +  +  G  LH  + + G    + V N LVD+Y KCG +  A   F  + + D +SWN +
Sbjct: 533 IPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGL 592

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I G   +G    A+S F+ M +AG  PD IT L +L  CSH GLV+ G++YF  M  ++ 
Sbjct: 593 IFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHG 652

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           ++P + HY CLVDL GRAG+LE+A+ VI T     D ++++TLLG+CK+H N+ +GE   
Sbjct: 653 IRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMA 712

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           +  ++L+ +    YVLLA +Y  +   E   +TR++++  G++  PG SW+E  N VH F
Sbjct: 713 RQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLF 772

Query: 442 VVDDKSHPDADMIYRKLEEIM--HRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
              D SHP    I+ K+E ++   R + I Y ++ +L                A+HSEKL
Sbjct: 773 TAGDTSHPQIGKIHEKIESLIAQFRNQGIWYQENRAL----------------AHHSEKL 816

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           A+AFGL +TP    +RI+KN+R            +    R++IVRD  R+H F+ G CSC
Sbjct: 817 AVAFGLISTPPKAPIRIIKNIRICRDCHDFIMNVTRLVDREIIVRDGNRFHSFKKGECSC 876

Query: 548 GDYW 551
             YW
Sbjct: 877 RGYW 880



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 130/255 (50%), Gaps = 2/255 (0%)

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
           +H  +I+ G++  + +S NL+  Y     +  AR +FD MP RD+ SW  ++S Y +   
Sbjct: 37  IHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGN 96

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
           H EAL+L++ M       + FTL   L SC+ +   N G     +  + GF  +  +G+A
Sbjct: 97  HEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSA 156

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           L+D Y+KCG    A+ VF  M   D++SW  M+  +   G   +A+  + +M+  G  P+
Sbjct: 157 LIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPN 216

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
             TF+ LL   S  GL    + + H+M+ R  L   +K    LVD+Y +   +E A++V 
Sbjct: 217 EFTFVKLLAASSFLGLNYGKLVHAHLMMWRIELNLVLK--TALVDMYCKCQSIEDAVKVS 274

Query: 351 NTSSPSDPVLWRTLL 365
             +   D  LW  ++
Sbjct: 275 KLTLEYDVFLWTAII 289



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 186/387 (48%), Gaps = 10/387 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+++      +W  L+ A+ +  +  +A+  ++ ML++    P+ FT +  L++C 
Sbjct: 69  ARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISG-EYPNEFTLSTALRSCS 127

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            ++  N        V +SG++   V+ + L+  Y+  G  + A  VF+ M   D+VSW  
Sbjct: 128 ALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTM 187

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++S + +A    +AL+LY RM    V  + FT V LL++ + +G LN G  +H       
Sbjct: 188 MVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMWR 246

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              ++ +  ALVDMY KC +++ A  V     + DV  W ++I G+    +  EAI+ F 
Sbjct: 247 IELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFH 306

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M  +G  P++ T+ G+L  CS    ++ G +  H  V    L+  +     LVD+Y + 
Sbjct: 307 EMETSGVVPNNFTYSGILNACSSILALDLGKQ-IHSRVVMAGLENDVSVGNSLVDMYMKC 365

Query: 341 GKL-EKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
             + E A+      +  + + W +L+     H  +E   I +   +Q        + L  
Sbjct: 366 SNMIEDAVRAFRGIASPNVISWTSLIAGFSEH-GLEEESIKVFGAMQGVGVRPNSFTLST 424

Query: 400 TIYACTKDEEGVARTRKL----IKSNG 422
            + AC   +  + +TRKL    IK+N 
Sbjct: 425 ILGACGTIKS-LTQTRKLHGYIIKNNA 450



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 4/322 (1%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F  + N    +W  ++ +F ++ S  QA+  Y+ M+   ++ P+ FTF   L A     
Sbjct: 173 VFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVA-PNEFTFV-KLLAASSFL 230

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            LN  + +H  ++    E  +V+ T L+  Y     IE A  V     E D+  W +IIS
Sbjct: 231 GLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIIS 290

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            +TQ+    EA+  +  M    V  + FT   +L++C+ + AL++G  +H      G   
Sbjct: 291 GFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLEN 350

Query: 224 SVYVGNALVDMYAKCGNL-DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
            V VGN+LVDMY KC N+ + A   F  +   +V+SW S+I G+  HG  +E+I  F  M
Sbjct: 351 DVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAM 410

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
              G  P+S T   +L  C     + +     H  + + N    +     LVD Y   G 
Sbjct: 411 QGVGVRPNSFTLSTILGACGTIKSLTQ-TRKLHGYIIKNNADNDVVVGNALVDAYAGLGM 469

Query: 343 LEKALEVINTSSPSDPVLWRTL 364
           ++ A  V +     D + + +L
Sbjct: 470 VDDAWHVTSMMKHRDVITYTSL 491



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 1/159 (0%)

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           GI +H    +MGF E +++ N L+ +Y KC  +  A  +F  M  RDV SW  ++  YG 
Sbjct: 34  GICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGK 93

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
            G  +EA+  F  ML++G +P+  T    L  CS       G   F  +V++        
Sbjct: 94  IGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTR-FQALVTKSGFDSNPV 152

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
               L+D Y + G  ++A  V    +  D V W  ++ S
Sbjct: 153 LGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSS 191


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 181/543 (33%), Positives = 303/543 (55%), Gaps = 17/543 (3%)

Query: 26  LLNSYA-ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMAS 83
           L++ YA  S   S+   + +F+++++    +W +LI  + ++ +   +AI  ++ M+   
Sbjct: 308 LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQG 367

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
              P+ FTF+   KAC  +      +++ G   + G      V+ +++  +  +  +E A
Sbjct: 368 HVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDA 427

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           +  F+++ E++LVS+N+ +    +     +A KL   +   ++G+  FT   LLS  A+V
Sbjct: 428 QRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANV 487

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           G++  G  +H    ++G   +  V NAL+ MY+KCG++D+A  VF+ M  R+V+SW SMI
Sbjct: 488 GSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMI 547

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            G+  HG     +  F QM+  G  P+ +T++ +L  CSH GLV EG  +F+ M   + +
Sbjct: 548 TGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKI 607

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           KP ++HY C+VDL  RAG L  A E INT    +D ++WRT LG+C++H N E+G++A +
Sbjct: 608 KPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAAR 667

Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
            +++L+      Y+ L+ IYAC    E     R+ +K   +    G SWIE+G+++HKF 
Sbjct: 668 KILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFY 727

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLA 500
           V D +HP+A  IY +L+ ++   K  GY  D  LV   +   + E   E+    HSEK+A
Sbjct: 728 VGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIA 787

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           +AFGL +T     +R+ KNLR            S    R++++RD  R+HHF+DG CSC 
Sbjct: 788 VAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCN 847

Query: 549 DYW 551
           DYW
Sbjct: 848 DYW 850



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W++++  +  +   L AI  +   L   L  P+ + +T  ++AC     +   +   GF
Sbjct: 133 SWSAMMACYGNNGRELDAIKVFVEFLELGLV-PNDYCYTAVIRACSNSDFVGVGRVTLGF 191

Query: 115 VIRSG-YERCVVVSTNLMRGYA-ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
           ++++G +E  V V  +L+  +       E A  VFD M E ++V+W  +I+   Q  F  
Sbjct: 192 LMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPR 251

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           EA++ +  M       D FTL  + S+CA +  L++G  LH  A   G V+ V    +LV
Sbjct: 252 EAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLV 309

Query: 233 DMYAKC---GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH-GRGDEAISFFKQMLMAG-F 287
           DMYAKC   G++D    VF RM    V+SW ++I GY  +     EAI+ F +M+  G  
Sbjct: 310 DMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHV 369

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            P+  TF      C +      G +       R  L         ++ ++ ++ ++E A 
Sbjct: 370 EPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVISMFVKSDRMEDAQ 428

Query: 348 EVINTSSPSDPVLWRTLL-GSCK 369
               + S  + V + T L G+C+
Sbjct: 429 RAFESLSEKNLVSYNTFLDGTCR 451



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 146/296 (49%), Gaps = 26/296 (8%)

Query: 86  RP-DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
           RP D+ TF+  LK+C R +     + +H  +I    E   V+  +L+  Y+ +G    A 
Sbjct: 58  RPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAE 117

Query: 145 SVFDNMP---ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSS 199
            VF+ M    +RD+VSW+++++CY      L+A+K++  + F ++GL  + +    ++ +
Sbjct: 118 DVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVF--VEFLELGLVPNDYCYTAVIRA 175

Query: 200 CAH-----VGALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKCGN-LDSAFCVFSRMR 252
           C++     VG + +G  +     + G  ES V VG +L+DM+ K  N  ++A+ VF +M 
Sbjct: 176 CSNSDFVGVGRVTLGFLM-----KTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMS 230

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           + +V++W  MI      G   EAI FF  M+++GF  D  T   +   C+    +  G +
Sbjct: 231 ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG-K 289

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRA---GKLEKALEVINTSSPSDPVLWRTLL 365
             H    R  L   ++    LVD+Y +    G ++   +V +       + W  L+
Sbjct: 290 QLHSWAIRSGLVDDVE--CSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALI 343



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 6/186 (3%)

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
           +D  T   LL SC       +G  +H    E        + N+L+ +Y+K G+   A  V
Sbjct: 60  MDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDV 119

Query: 248 FSRMR---KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
           F  MR   KRDV+SW++M+  YG +GR  +AI  F + L  G  P+   +  ++  CS+ 
Sbjct: 120 FETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNS 179

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGC-LVDLYGRA-GKLEKALEVINTSSPSDPVLWR 362
             V  G      ++   + +  +   GC L+D++ +     E A +V +  S  + V W 
Sbjct: 180 DFVGVGRVTLGFLMKTGHFESDV-CVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWT 238

Query: 363 TLLGSC 368
            ++  C
Sbjct: 239 LMITRC 244


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 194/531 (36%), Positives = 293/531 (55%), Gaps = 24/531 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           + Y+  +F++++     +W ++I  +AQS   ++A+  +       + + D       L+
Sbjct: 417 IEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGI-KVDPMMIGSILE 475

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  ++ +   ++LH + IR+G    +VV   ++  Y   G +  +  +F+ + ++D+V+
Sbjct: 476 ACSGLETILLAKQLHCYAIRNGLLD-LVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVT 534

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W S+I+CY  +    EAL L+  M+  DV  D   LV +L +   + +L  G  +H    
Sbjct: 535 WTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLI 594

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
              F     + ++LVDMY+ CG+L  A  VF+ ++ +D++ W +MI   G+HG G +AI 
Sbjct: 595 RRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAID 654

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            FK+ML  G  PD ++FL LL  CSH  LV EG  Y  MM+S Y L+P  +HY C+VDL 
Sbjct: 655 LFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLL 714

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GR+G+ E+A E I  S P  P  V+W +LLG+C++H+N E+  +A   L++LE  + G+Y
Sbjct: 715 GRSGQTEEAYEFIK-SMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNY 773

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VL++ ++A           R  I   G++  P  SWIEIGN VH F   D SH DA+ I 
Sbjct: 774 VLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERIN 833

Query: 456 RKLEEIMHR-AKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            KL EI  R  K  GYT+D   V   VS     D L +    HSE+LAI+FGL  T  G 
Sbjct: 834 LKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHR----HSERLAISFGLINTRPGM 889

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            LRI KNLR            S  + RD++VRD  R+HHF  G CSCGD+W
Sbjct: 890 PLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 195/389 (50%), Gaps = 22/389 (5%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS--RPDTFTFTFTLKA 98
           A+LLF+ + +    +WN+LI A+  S S  +A+  Y  M +++ S   PD  T    LKA
Sbjct: 114 ARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKA 173

Query: 99  CERVKALNKCQ-ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLV 156
              V+   +C  E+HG  ++ G +R   V+  L+  YA  G++++A  VF+ M + RD+ 
Sbjct: 174 -SGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVA 232

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWNS+IS   Q    L+AL L+  M+   + ++ +T V +L  C  +  LN+G  LH   
Sbjct: 233 SWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAAL 292

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + G   ++   NAL+ MY KCG +DSA  VF  + ++D +SWNSM+  Y  +G   EAI
Sbjct: 293 LKSGSEVNIQC-NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAI 351

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
            F  +ML  GF PD    + L     H G +  G E  H    +  L    +    L+D+
Sbjct: 352 EFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKE-VHAYAIKQRLDSDTQVGNTLMDM 410

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSC--KIHRNVEIGEI---AMKNLVQ----- 386
           Y +   +E +  V +     D + W T++ +C  +  R++E  EI   A K  ++     
Sbjct: 411 YMKCRYIEYSAHVFDRMRIKDHISWTTII-TCYAQSSRHIEALEIFREAQKEGIKVDPMM 469

Query: 387 ----LEAASAGDYVLLATIYACTKDEEGV 411
               LEA S  + +LLA    C     G+
Sbjct: 470 IGSILEACSGLETILLAKQLHCYAIRNGL 498



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 154/312 (49%), Gaps = 6/312 (1%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WNS+I    Q+   LQA+  +  M  A LS  +++T    L+ C  +  LN  +ELH  
Sbjct: 233 SWNSMISGCLQNGMFLQALDLFRGMQRAVLSM-NSYTTVGVLQVCTELAQLNLGRELHAA 291

Query: 115 VIRSGYERCVVVSTN-LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
           +++SG E  V +  N L+  Y   G +++A  VF  + E+D +SWNS++SCY Q   + E
Sbjct: 292 LLKSGSE--VNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAE 349

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           A++    M       D   +V L S+  H+G L  G  +H  A +        VGN L+D
Sbjct: 350 AIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMD 409

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY KC  ++ +  VF RMR +D +SW ++I  Y    R  EA+  F++    G   D + 
Sbjct: 410 MYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMM 469

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
              +L  CS    +    +     +    L   +K+   ++D+YG  G++  +L++  T 
Sbjct: 470 IGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNR--IIDIYGECGEVYHSLKMFETV 527

Query: 354 SPSDPVLWRTLL 365
              D V W +++
Sbjct: 528 EQKDIVTWTSMI 539



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 126/253 (49%), Gaps = 7/253 (2%)

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE- 184
           ++T L+  Y   G +  AR +FD M  R + SWN++I  Y  +    EAL +Y  MR   
Sbjct: 97  LATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSA 156

Query: 185 --DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
              V  DG TL  +L +    G    G  +H +A + G   S +V NAL+ MYAKCG LD
Sbjct: 157 ASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILD 216

Query: 243 SAFCVFSRMRK-RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           SA  VF  M   RDV SWNSMI G   +G   +A+  F+ M  A    +S T +G+L  C
Sbjct: 217 SAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVC 276

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
           +    +  G E  H  + +   +  I+    LV +Y + G+++ AL V       D + W
Sbjct: 277 TELAQLNLGRE-LHAALLKSGSEVNIQCNALLV-MYTKCGRVDSALRVFREIDEKDYISW 334

Query: 362 RTLLGSCKIHRNV 374
            ++L SC +   +
Sbjct: 335 NSML-SCYVQNGL 346



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 8/208 (3%)

Query: 205 ALNMGIFLHRIACEMGFVE--SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           A+  G+ +H  A   G +E    ++   L+ MY KCG +  A  +F  M  R V SWN++
Sbjct: 73  AVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNAL 132

Query: 263 IVGYGVHGRGDEAISFFKQMLM---AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           I  Y   G   EA+  ++ M +   +G  PD  T   +L     +G    G E  H +  
Sbjct: 133 IGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCE-VHGLAV 191

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGE 378
           ++ L         L+ +Y + G L+ A+ V        D   W +++  C +   + +  
Sbjct: 192 KHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGC-LQNGMFLQA 250

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTK 406
           + +   +Q    S   Y  +  +  CT+
Sbjct: 251 LDLFRGMQRAVLSMNSYTTVGVLQVCTE 278


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 190/527 (36%), Positives = 289/527 (54%), Gaps = 15/527 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF+++      +WN+ I  +     P +A+  +  M     S  + FT +  L 
Sbjct: 169 LEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALA 228

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A   +  L   +E+HG++IR+      VV + L+  Y   G ++ AR +FD M +RD+VS
Sbjct: 229 ASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVS 288

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++I    +     E   L+  +    V  + +T   +L++CA   A ++G  +H    
Sbjct: 289 WTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMM 348

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             G+    +  +ALV MY+KCGN   A  VF+ M + D++SW S+IVGY  +G+ DEA+ 
Sbjct: 349 HAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALH 408

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
           FF+ +L +G  PD +T++G+L  C+H GLV++G+EYFH +  ++ L     HY C++DL 
Sbjct: 409 FFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLL 468

Query: 338 GRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            R+G+ ++A  +I N     D  LW +LLG C+IH N+E+ + A K L ++E  +   Y+
Sbjct: 469 ARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYI 528

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
            LA IYA       VA  RK + + GI   PG SWIEI  QVH F+V D SHP    I+ 
Sbjct: 529 TLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHE 588

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            L E+  + K  GY  D + V       E+  E++  YHSEKLA+ FG+ +TP GT +++
Sbjct: 589 FLGELSKKIKEEGYVPDTNFVL--HDVEEEQKEQNLVYHSEKLAVVFGIISTPPGTPIKV 646

Query: 517 VKNLRS-------IAY-----SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            KNLR+       I Y      R + VRD  R+H F DG CSC DYW
Sbjct: 647 FKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 150/322 (46%), Gaps = 39/322 (12%)

Query: 79  MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR------ 132
           +L  +  RP    ++  + AC R +AL   + +H     S +   V +S  L+       
Sbjct: 77  LLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCG 136

Query: 133 -------------------------GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ 167
                                    GYA  G +E AR +FD MP+RD  SWN+ IS Y  
Sbjct: 137 SLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVT 196

Query: 168 ASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH--RIACEMGFVES 224
            +   EAL+L+  M R E    + FTL   L++ A +  L +G  +H   I  E+   E 
Sbjct: 197 HNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEV 256

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           V+  +AL+D+Y KCG+LD A  +F +M+ RDV+SW +MI      GR +E    F+ ++ 
Sbjct: 257 VW--SALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQ 314

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
           +G  P+  TF G+L  C+       G E + +MM + Y+  PG      LV +Y + G  
Sbjct: 315 SGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYD--PGSFAISALVHMYSKCGNT 372

Query: 344 EKALEVINTSSPSDPVLWRTLL 365
             A  V N     D V W +L+
Sbjct: 373 RVARRVFNEMHQPDLVSWTSLI 394



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 40/244 (16%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           L+++C    AL +G  +H       FV  V++ N L+DMYAKCG+L  A  +F  M  RD
Sbjct: 93  LIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRD 152

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           + SWN+MIVGY   GR ++A   F +M       D+ ++   + G        E +E F 
Sbjct: 153 LCSWNTMIVGYAKLGRLEQARKLFDEMPQR----DNFSWNAAISGYVTHNQPREALELFR 208

Query: 316 MMVSRYN--------------------LKPGIKHYG---------------CLVDLYGRA 340
           +M                         L+ G + +G                L+DLYG+ 
Sbjct: 209 VMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKC 268

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
           G L++A  + +     D V W T++  C      E G +  ++L+Q       +Y     
Sbjct: 269 GSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQ-SGVRPNEYTFAGV 327

Query: 401 IYAC 404
           + AC
Sbjct: 328 LNAC 331


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 191/531 (35%), Positives = 292/531 (54%), Gaps = 78/531 (14%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGY-------ERCVVVSTNLMRGYAANGV 139
           P+  +   TL+  E+ K L+  +++H  +I +G         R +++S+ +        V
Sbjct: 4   PNPSSNHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTI--------V 55

Query: 140 IEAARSVFDNMPERDLVSWNSIISC------YTQASFHL--------------------- 172
              A S+F+++P   +  +N++IS       +T  +F L                     
Sbjct: 56  FTHALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLF 115

Query: 173 -----------------EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
                              L L+  M+   +  +  TLV L+S+CA +GAL+ G + H  
Sbjct: 116 KACGSQPWLRHDIFLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVY 175

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             +     + +VG AL+DMY+KCG LD A  +F ++  RD L +N+MI G+ +HG G +A
Sbjct: 176 VLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQA 235

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  FK+M + G  PD +T +  +C CSH GLVEEG + F  M   Y ++P ++HYGCLVD
Sbjct: 236 LDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVD 295

Query: 336 LYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           L GRAG+L +A E V+N     + V+WR+LLG+ ++H N+EIGE+ +K+L+QLE  ++G+
Sbjct: 296 LLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGN 355

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ +YA     + V R RKL+K +GI   PG S +E+G  +H+F++ DK+HP +  I
Sbjct: 356 YVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEI 415

Query: 455 YRKLEEIMHRAKFIGYTKD--ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
           Y KLEE+  R    G+     E L  +     ED L    +YHSE+LAIAF L  +    
Sbjct: 416 YLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDAL----SYHSERLAIAFALIASHHCA 471

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +RI+KNLR            S  Y R++IVRDR R+HHF++G CSC DYW
Sbjct: 472 PIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 136/309 (44%), Gaps = 53/309 (17%)

Query: 14  KARQAHEIHGEWLLNSYAIS----VSSSLSYAQLL--FNQIQNPQTQAWNSLIRAFAQSL 67
           K   AH I    + ++Y +S    +SS++ +   L  FN I NP    +N+LI + A ++
Sbjct: 26  KQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIFNHIPNPTIFLYNTLISSLA-NI 84

Query: 68  SPLQAIFY--YNHMLMASLSRPDTFTFTFTLKAC---------------------ERVKA 104
            P   I +  Y+ +L  +  +P+ FTF    KAC                     E  K+
Sbjct: 85  KPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHDIFLIKSVLTLFIEMQKS 144

Query: 105 LNK------------CQEL---------HGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
           L K            C EL         H +V++   +    V T L+  Y+  G ++ A
Sbjct: 145 LIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLA 204

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
             +FD +P RD + +N++I  +    +  +AL L+++M  E +  D  TLV  + SC+HV
Sbjct: 205 CQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHV 264

Query: 204 GALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKCGNLDSA-FCVFSRMRKRDVLSWNS 261
           G +  G  +     E+  VE  +     LVD+  + G L  A   V +   K + + W S
Sbjct: 265 GLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRS 324

Query: 262 MIVGYGVHG 270
           ++    VHG
Sbjct: 325 LLGAARVHG 333


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 201/549 (36%), Positives = 309/549 (56%), Gaps = 24/549 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQ-AWNSLIRAFAQSLSPLQAIFYYNHMLM 81
           G  L+ SY  S +  L  A+ +F+ +   + + +WNS++ A+ Q     +A+  Y  M +
Sbjct: 176 GNALITSY--SKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTV 233

Query: 82  ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA-ANGVI 140
             L   D FT    L A   V+ L    + H  +I+SGY +   V + L+  Y+   G +
Sbjct: 234 RGLI-VDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCM 292

Query: 141 EAARSVFDNMPERDLVSWNSIISCYT-QASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
              R VFD +   DLV WN++IS Y+       EAL+ + +++      D  +LVC++S+
Sbjct: 293 LDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISA 352

Query: 200 CAHVGALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           C+++ + + G  +H +A ++    + + V NAL+ MY+KCGNL  A  +F  M + + +S
Sbjct: 353 CSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVS 412

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           +NSMI GY  HG G +++  F++ML  GF P +ITF+ +L  C+H G VE+G  YF+MM 
Sbjct: 413 YNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMK 472

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEI 376
            ++ ++P   H+ C++DL GRAGKL +A  +I T  P DP    W  LLG+C+IH NVE+
Sbjct: 473 QKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIET-IPFDPGFFFWSALLGACRIHGNVEL 531

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
              A   L+QL+  +A  YV+LA IY+     +  A  RKL++  G+K  PG SWIE+  
Sbjct: 532 AIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNR 591

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSS--EDFLEKSSAY 494
           ++H FV +D  HP    I   LEE+M + K +GYT +     V G     +   E    +
Sbjct: 592 RIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGH 651

Query: 495 HSEKLAIAFGLATTPDGTSLRIVKNLR-------SIAY-----SRDLIVRDRVRYHHFRD 542
           HSEKLA++FGL +T +G  + + KNLR       +I Y      R++ VRD  R+H F+D
Sbjct: 652 HSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKD 711

Query: 543 GLCSCGDYW 551
           G CSCG YW
Sbjct: 712 GQCSCGGYW 720



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 178/351 (50%), Gaps = 12/351 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+++YA    S +  A  LF+++  P + ++N+LI A+A+      A   +  M  A L 
Sbjct: 80  LISAYA--KESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLD 137

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
             D FT +  + AC     L   ++LH   + +G +  V V   L+  Y+ NG ++ AR 
Sbjct: 138 M-DGFTLSGIITACGINVGL--IRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARR 194

Query: 146 VFDNMPE-RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           +F  + E RD VSWNS++  Y Q     +AL+LY  M    + +D FTL  +L++  +V 
Sbjct: 195 IFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQ 254

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN--LDSAFCVFSRMRKRDVLSWNSM 262
            L  G+  H    + G+ ++ +VG+ L+D+Y+KCG   LD    VF  +   D++ WN+M
Sbjct: 255 DLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCR-KVFDEISNPDLVLWNTM 313

Query: 263 IVGYGVH-GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           I GY ++    DEA+  F+Q+ + G  PD  + + ++  CS+     +G +  H +  + 
Sbjct: 314 ISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQ-VHGLALKL 372

Query: 322 NLKPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           ++    I     L+ +Y + G L  A  + +T    + V + +++     H
Sbjct: 373 DIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQH 423



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 146/290 (50%), Gaps = 14/290 (4%)

Query: 123 CVVVSTN-LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           C V S N L+  YA    +E A  +FD MP+ D VS+N++I+ Y +      A +L+  M
Sbjct: 72  CNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEM 131

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIF--LHRIACEMGFVESVYVGNALVDMYAKCG 239
           R   + +DGFTL  ++++C     +N+G+   LH ++   G    V VGNAL+  Y+K G
Sbjct: 132 REAFLDMDGFTLSGIITAC----GINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNG 187

Query: 240 NLDSAFCVFSRMRK-RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
            L  A  +F  + + RD +SWNSM+V Y  H  G +A+  + +M + G   D  T   +L
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 299 CGCSHQGLVEEGVEYFHMMV-SRYNLKPGIKHYGC-LVDLYGRAGK-LEKALEVINTSSP 355
              ++   +  G+++   ++ S Y+      H G  L+DLY + G  +    +V +  S 
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKSGYHQN---SHVGSGLIDLYSKCGGCMLDCRKVFDEISN 304

Query: 356 SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
            D VLW T++    ++ ++    +     +Q+      D  L+  I AC+
Sbjct: 305 PDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACS 354



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 4/119 (3%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
            L +C     L  G  LH +  +     S Y+ N  + +Y+KC  L +A  VF      +
Sbjct: 14  FLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCN 73

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           V S+N++I  Y      + A   F +M      PDS+++  L+   + +G  +   + F
Sbjct: 74  VFSFNTLISAYAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAFQLF 128


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 194/529 (36%), Positives = 295/529 (55%), Gaps = 18/529 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L  A+ LF+++ +     WN+++    +     +A+  ++ M   S   PD ++    L
Sbjct: 150 NLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSF-MPDEYSLGSVL 208

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           + C  + AL   Q++H +V++ G+E  +VV  +L   Y   G +     V + MP+  LV
Sbjct: 209 RGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLV 268

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           +WN+++S   Q  +    L  Y  M+      D  T V ++SSC+ +  L  G  +H  A
Sbjct: 269 AWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEA 328

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + G    V V ++LV MY++CG L  +   F   ++RDV+ W+SMI  YG HG+G+EAI
Sbjct: 329 VKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAI 388

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F +M       + ITFL LL  CSH GL ++G+  F MMV +Y LK  ++HY CLVDL
Sbjct: 389 KLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDL 448

Query: 337 YGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GR+G LE+A E +  S P  +D ++W+TLL +CKIH+N EI       +++++   +  
Sbjct: 449 LGRSGCLEEA-EAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSAS 507

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLLA IY+     + V+  R+ +K   +K  PG SW+E+ NQVH+F + D+ HP    I
Sbjct: 508 YVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEI 567

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
            + LEE+    K  GY  D S V     + E   E+   +HSEKLAIAF L  TP+G  +
Sbjct: 568 NQYLEELTSEIKRQGYVPDTSSVLHDMDNEEK--EQILRHHSEKLAIAFALMNTPEGVPI 625

Query: 515 RIVKNLR-------SIAY-----SRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++KNLR       +I Y       ++IVRD  R+HHF++G CSCGDYW
Sbjct: 626 RVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 177/370 (47%), Gaps = 40/370 (10%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSG------------------------------YE 121
           F+  L+AC  +K+++  ++LH  +  SG                                
Sbjct: 72  FSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMP 131

Query: 122 RCVVVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           R  ++S N+M + Y   G +E+A+++FD MP+R++ +WN++++  T+   + EAL L+ R
Sbjct: 132 RRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSR 191

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M       D ++L  +L  CAH+GAL  G  +H    + GF  ++ VG +L  MY K G+
Sbjct: 192 MNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGS 251

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           +     V + M    +++WN+++ G    G  +  +  +  M MAGF PD ITF+ ++  
Sbjct: 252 MHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISS 311

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           CS   ++ +G +  H    +      +     LV +Y R G L+ +++        D VL
Sbjct: 312 CSELAILCQGKQ-IHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVL 370

Query: 361 WRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIYACTK---DEEGVARTR 415
           W +++ +   H     GE A+K  N ++ E     +   L+ +YAC+     ++G+    
Sbjct: 371 WSSMIAAYGFHGQ---GEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFD 427

Query: 416 KLIKSNGIKT 425
            ++K  G+K 
Sbjct: 428 MMVKKYGLKA 437


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 209/595 (35%), Positives = 316/595 (53%), Gaps = 58/595 (9%)

Query: 11  GLNKARQAHEIHGEWLLNSYAISVSSSLSYAQL--------------LFNQIQNPQTQ-- 54
           G N  R+   +HG  L+  Y   VS+ L  + +              +FN I   Q    
Sbjct: 177 GSNCLRRGSAVHG--LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVV 234

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLS--RPDTFTFTFTLKACERVKALNKCQELH 112
           +WNSLI  F  +    +A+  +  M+    S   P+  T    LK+C  +  +     +H
Sbjct: 235 SWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVH 294

Query: 113 GFVIRSG----YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
            ++          + VVV T L+  +A  G +  AR +FD +  +++V W+++I+ Y Q 
Sbjct: 295 EYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQG 354

Query: 169 SFHLEALKLYERMRFE------DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           S   EAL+L+ +M  E      +V  +  TLV ++++C+ +GA      +H+ A   G  
Sbjct: 355 SCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLD 414

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +   + +AL+DM AKCG+++    VFS M +  R V+SW+SMI   G+HG G  A+  F 
Sbjct: 415 QDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFS 474

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M   G+ P+ IT++ +L  CSH GLVE+G   F+ M   Y + P  KHY CLVDL GRA
Sbjct: 475 EMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRA 534

Query: 341 GKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G L++A  VI N    +D  LW +LL +C +H N ++GEI  K ++ L++ S G +VLLA
Sbjct: 535 GHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLA 594

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            +Y      + V R R  ++ +G++  PG S+IEIGN+V+ F+ +D+SHP+++MIY++L+
Sbjct: 595 NMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELD 654

Query: 460 EIMHRA-KFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGL----------ATT 508
            +  R  K   Y  +  L    G  +   L     YHSE+LAIAFGL           + 
Sbjct: 655 GLDERVRKAAKYVTETGLNVEDGDIAGLILR--CKYHSERLAIAFGLIMIDRHSTCSCSL 712

Query: 509 PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              T +RI KNLR            S    R+LIVRD  R+HHFRDG CSCGDYW
Sbjct: 713 RTATPIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 119/406 (29%), Positives = 197/406 (48%), Gaps = 33/406 (8%)

Query: 47  QIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALN 106
            I +  T  WNSLI A   + +P  A+ ++  M  A     + FTF   LKAC  ++ L 
Sbjct: 12  SISHKDTFHWNSLI-AKNATQNPQTALTFFTRM-QAHAVPSNNFTFPALLKACAALRRLL 69

Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER--DLVSWNSIISC 164
              ++H ++ R G       +  L+  Y   G    A  VFD MPE   D+VSW ++IS 
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 165 YTQASFHLEALKLYERMRF-------EDVGLDGFTLVCLLSSCAHVG----ALNMGIFLH 213
           Y+      EA K + RMR+       E  G+D  +L  L+S+CA VG     L  G  +H
Sbjct: 130 YSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACA-VGCGSNCLRRGSAVH 188

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHGR 271
            +  + GF  S ++GN++V MY+ C ++  A+ VF+   + +RDV+SWNS+I G+ ++G 
Sbjct: 189 GLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGE 248

Query: 272 GDEAISFFKQMLMAG---FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN---LKP 325
            + A+  F+ M+  G     P+ +T + LL  C+  G VE        + SR++   +  
Sbjct: 249 AERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAK 308

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-----GSCKIHRNVEIGEIA 380
            +     L+D++ R G L  A E+ +     + V W  ++     GSC         ++ 
Sbjct: 309 DVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQML 368

Query: 381 MK-NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
           M+ N+V +E        L++ I AC++   G +R+  +I    + T
Sbjct: 369 MEGNMVGVE-VKPNAVTLVSVIAACSR--LGASRSASMIHKYAVAT 411


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 183/511 (35%), Positives = 287/511 (56%), Gaps = 19/511 (3%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           W ++   ++++  P +A+  Y  M+     +   F F+  LKAC  +  L   + +H  V
Sbjct: 146 WVAMGIGYSRNGYPKEALLLYYEMV-CQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQV 204

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
           +++  +   VV+  L+R Y+ +G  + A  VFD MP R++VSWNS+I+   +     EA+
Sbjct: 205 LKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAI 264

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           + +  M+ + +G    TL  +L  CA V AL  G  +H +  +        V N+LVDMY
Sbjct: 265 EAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMY 324

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           AKCG +D    VF+ M+ +D+ SWN++I GY ++GR  EA+  F++M+ +GF PD ITF+
Sbjct: 325 AKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFI 384

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
            LL GCSH GL ++G   F MM   Y + P ++HY CLVD+ GRAG++++ALE++  + P
Sbjct: 385 ALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVK-NMP 443

Query: 356 SDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
             P   +W +LL SC++H NV + E   K L +LE  +AG+YV+L+ IYA     E V  
Sbjct: 444 FKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWESVKV 503

Query: 414 TRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL-EEIMHRAKFIGYTK 472
            R+ ++  G+    G SW++I +++H FV    +     + Y+K+ + +M   + +GY  
Sbjct: 504 VREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVP 563

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           D  +V      SE+        HSE+LA  F L  T  G  +RI KNLR           
Sbjct: 564 DTGVVL--HDVSEEMRAMWVCGHSERLATMFALINTASGMPIRITKNLRVCVDCHSWVKT 621

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S    R +++RD  R+HHF+DG+CSC DYW
Sbjct: 622 LSKVTGRVIVLRDTNRFHHFKDGVCSCKDYW 652



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 7/149 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++ Y + +FN +Q     +WN+LI  +A +    +A+  +  M+ +  S PD  TF   L
Sbjct: 329 AMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFS-PDGITFIALL 387

Query: 97  KACERVK-ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
             C     A + C+      +  G    V     L+      G I+ A  +  NMP +  
Sbjct: 388 SGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPT 447

Query: 156 VS-WNSII-SCYTQASFHLE---ALKLYE 179
            S W S++ SC    +  L    A +L+E
Sbjct: 448 GSIWGSLLNSCRLHGNVPLAEAVAKRLFE 476


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 194/560 (34%), Positives = 303/560 (54%), Gaps = 26/560 (4%)

Query: 14  KARQAHEIHGEWLLNSYAISVSSSLSYAQL-----LFNQIQNPQTQAWNSLIRAFAQSLS 68
           +AR+A     +    S+ I + + L    L     LF++       +WN+++    +   
Sbjct: 179 RARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGH 238

Query: 69  PLQAIFYYNHMLMASLSRPD-TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
             +A+     M+ A ++  + T++  F L      + L +  +LHG V+ +  E    V 
Sbjct: 239 TTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGR--QLHGRVVVAVLEEDAFVG 296

Query: 128 TNLMRGYAANGVIEAARSVFD---NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
            +LM  Y   G +E+A S+FD   +  E    +W+++++ Y Q     EAL+ + RM  E
Sbjct: 297 CSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLRE 356

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            V    F L  + S+CA+ G +  G  +H    ++G      + +A+VDMY+K G+L+ A
Sbjct: 357 GVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDA 416

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             +F   + ++V  W +M+  Y  HG+G  A+  F +M      P+ IT + +L  CSH 
Sbjct: 417 CRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHS 476

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRT 363
           GLV +G  YF++M   Y + P  +HY C+VDLYGRAG L+KA   I  +  S + V+W+T
Sbjct: 477 GLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKT 536

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LL +C++H+++E  ++A + LVQLE   AG YVL++ +YA         + R  +K   +
Sbjct: 537 LLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRV 596

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
           +  PG SWI + N VH+FV  D SHP +  IY  LE++M R K +GYT    LV      
Sbjct: 597 RKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVV--HDI 654

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIV 531
            E+  E S  +HSEKLAIAFG+ +TP GT+LRI KNLR            + A  R+++V
Sbjct: 655 EEEQRETSLKFHSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVV 714

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RD  R+HHF+DG CSC D+W
Sbjct: 715 RDLYRFHHFKDGQCSCEDFW 734



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 178/409 (43%), Gaps = 41/409 (10%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML-MASLSRPDTFTF 92
           ++  L  A  +F+        AW S+I   A+       +  +  ML     + P+ F  
Sbjct: 70  IARGLHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVL 129

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG-------------- 138
              L+ C  +  +   + +HG+++RSG    VV+   ++  YA  G              
Sbjct: 130 AGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQ 189

Query: 139 --------VIEA---------ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
                   VI A         A  +FD    RD+ SWN+I+S   +     EAL   ++M
Sbjct: 190 KDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQM 249

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
               V    +T   + +    + + ++G  LH         E  +VG +L+DMY KCG +
Sbjct: 250 VRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEM 309

Query: 242 DSAFCVFSR---MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           +SA  +F R     +    +W++M+ GY  +GR +EA+ FF++ML  G          + 
Sbjct: 310 ESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVA 369

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             C++ G+VE+G +  H  V +   +        +VD+Y ++G LE A  +  ++   + 
Sbjct: 370 SACANAGMVEQGRQ-VHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNV 428

Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACT 405
            LW T+L S   H     G +A++   +++A      +  L+A + AC+
Sbjct: 429 ALWTTMLCSYASHGQ---GRMALEIFSRMKAEKIMPNEITLVAVLSACS 474



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 153/400 (38%), Gaps = 86/400 (21%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P TF F  + +      A    + +H   +R     CV  S+ + RG      +  A  V
Sbjct: 31  PQTFIFHSSARLLPEAGACAAKKAIHRQSVRG----CVPSSSVIARG------LHNAHRV 80

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE--DVGLDGFTLVCLLSSCAHVG 204
           FD  P R L +W SIIS   +   H + ++ +  M  E      + F L  +L  CA +G
Sbjct: 81  FDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLG 140

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK----------- 253
            +  G  +H      G    V + NA++DMYAKCG+   A   F  M +           
Sbjct: 141 DVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIR 200

Query: 254 --------------------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
                               RDV SWN+++ G   HG   EA+   +QM+ AG    + T
Sbjct: 201 ACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYT 260

Query: 294 F------LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-LVDLYGRAGKLEKA 346
           +       GLL   S + L  +     H  V    L+      GC L+D+Y + G++E A
Sbjct: 261 YSMVFALAGLL---SSRDLGRQ----LHGRVVVAVLEED-AFVGCSLMDMYCKCGEMESA 312

Query: 347 LEVINTSS---PSDPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
           L + +  S         W T++ G  +  R  E  E   + L   E   AG ++L +   
Sbjct: 313 LSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRML--REGVPAGQFILTSVAS 370

Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
           AC                           +E G QVH FV
Sbjct: 371 ACANA----------------------GMVEQGRQVHGFV 388


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 189/546 (34%), Positives = 295/546 (54%), Gaps = 25/546 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA      L YA  +F+ +       W++LI  F       +A   +  ML+ 
Sbjct: 242 GTALLDMYA--KCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVE 299

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +      +    L+ C  +  L    +LH  + +SG    +    +L+  YA  G+I  
Sbjct: 300 GMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINE 359

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  +FD +  +D +S+ +++S Y Q     EA  ++++M+  +V  D  T+V L+ +C+H
Sbjct: 360 ATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSH 419

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL  G   H      G      + N+L+DMYAKCG +D +  VF +M  RD++SWN+M
Sbjct: 420 LAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTM 479

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I GYG+HG G EA + F  M   GF PD +TF+ L+  CSH GLV EG  +F  M  +Y 
Sbjct: 480 IAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYG 539

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           + P ++HY C+VDL  R G L++A + I +    +D  +W  LLG+C+IH+N+++G+   
Sbjct: 540 ILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVS 599

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           + + +L     G++VLL+ I++     +  A  R + K  G K +PG SWIEI   +H F
Sbjct: 600 RMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAF 659

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA----YHSE 497
           V  D+SHP +  IY +L+ I+   K +GY  D S V       +D  E+       YHSE
Sbjct: 660 VGGDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVL------QDLEEEEKEKALLYHSE 713

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLAIAFG+ +  +  ++ + KNLR            ++  +R +IVRD  R+HHF++G C
Sbjct: 714 KLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQC 773

Query: 546 SCGDYW 551
           SCGD+W
Sbjct: 774 SCGDFW 779



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 173/358 (48%), Gaps = 15/358 (4%)

Query: 18  AHEI--HGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFY 75
           +HE+  + EW            L+ A+ +F++I  P  +A+N+LIRA++       AI  
Sbjct: 27  SHEVKDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDL 86

Query: 76  YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
           Y  ML   +  P+ +TF F LKAC  +  L   + +H      G    + VST L+  Y 
Sbjct: 87  YRSMLYFRVP-PNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYI 145

Query: 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG---LDGFT 192
                  A +VF  MP RD+V+WN++++ Y     +  A+     +  +D G    +  T
Sbjct: 146 RCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIA--HLLDMQDRGGLRPNAST 203

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFV----ESVYVGNALVDMYAKCGNLDSAFCVF 248
           LV LL   A  GAL  G  +H   C   ++    E V +G AL+DMYAKC +L  A  VF
Sbjct: 204 LVSLLPLLAQHGALFQGTSVHAY-CLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVF 262

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG-LLCGCSHQGLV 307
             M  R+ ++W+++I G+ +  R  EA + FK ML+ G    S T +   L  C+    +
Sbjct: 263 HGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADL 322

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             G +  H ++++  +   +     L+ +Y +AG + +A  + +  +  D + +  LL
Sbjct: 323 RMGTQ-LHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALL 379



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 116/241 (48%), Gaps = 7/241 (2%)

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT-QASFHLEALKLYERMRFEDVGLD 189
           +  + A G +  AR VFD +P  D  ++N++I  Y+ +  FH  A+ LY  M +  V  +
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFH-AAIDLYRSMLYFRVPPN 98

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
            +T   +L +C+ +  L  G  +H  A  +G    ++V  AL+D+Y +C     A  VF+
Sbjct: 99  KYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFA 158

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVE 308
           +M  RDV++WN+M+ GY  HG    AI+    M    G  P++ T + LL   +  G + 
Sbjct: 159 KMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALF 218

Query: 309 EGVEYFHMMVSRYNLKPGIKHY---GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +G    H    R  L    +       L+D+Y +   L  A  V +  +  + V W  L+
Sbjct: 219 QGTS-VHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALI 277

Query: 366 G 366
           G
Sbjct: 278 G 278



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 1/133 (0%)

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G L  A  VF R+   D  ++N++I  Y   G    AI  ++ ML     P+  TF  +L
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             CS    +  G    H   +   L   +     L+DLY R  +   A  V       D 
Sbjct: 107 KACSALADLCAG-RTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDV 165

Query: 359 VLWRTLLGSCKIH 371
           V W  +L     H
Sbjct: 166 VAWNAMLAGYANH 178


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 196/559 (35%), Positives = 283/559 (50%), Gaps = 51/559 (9%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F ++       WN++I  + QS     A   +  M+   +   D FTFT  L AC 
Sbjct: 253 ARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPL-DEFTFTSVLSACA 311

Query: 101 RVKALNKCQELHGFVIRSGY----ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
                   + +HG +IR       E  + V+  L+  Y+  G I  A+ +FD M  +D+V
Sbjct: 312 NAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVV 371

Query: 157 SWNSI-------------------------------ISCYTQASFHLEALKLYERMRFED 185
           SWN+I                               +S Y       +ALKL+ +MR ED
Sbjct: 372 SWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAED 431

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           V    +T    +++C  +GAL  G  LH    + GF  S   GNAL+ MYAKCG ++ A 
Sbjct: 432 VKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDAR 491

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  M   D +SWN+MI   G HG G EA+  F QM+  G  PD I+FL +L  C+H G
Sbjct: 492 LVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAG 551

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTL 364
           LV+EG  YF  M   + + PG  HY  L+DL GR+G++ +A ++I T      P +W  +
Sbjct: 552 LVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAI 611

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
           L  C+ + ++E G  A   L ++     G Y+LL+  Y+        AR RKL++  G+K
Sbjct: 612 LSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVK 671

Query: 425 TTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSS 484
             PG SWIE+G+++H F+V D  HP+A  +Y+ LE I  R + +GY  D   V       
Sbjct: 672 KEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPH 731

Query: 485 EDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVR 532
           E   E     HSEKLA+ FGL   P G ++ ++KNLR            S A  R+++VR
Sbjct: 732 EK--EYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVR 789

Query: 533 DRVRYHHFRDGLCSCGDYW 551
           D  R+HHF+DG CSCG+YW
Sbjct: 790 DVRRFHHFKDGECSCGNYW 808



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 161/328 (49%), Gaps = 45/328 (13%)

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK--ALNKCQELHGF 114
           N+++ AFA++     A+  ++ +L +   RPD ++FT  + A  ++   A   C +LH  
Sbjct: 131 NAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCS 190

Query: 115 VIRSGYERCVVVS----------------------------------TNLMRGYAANGVI 140
           V++SG    + VS                                  T ++ GY   G +
Sbjct: 191 VLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDV 250

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
            AARSVF+ +  +  V WN++IS Y Q+    +A +L+ RM  E V LD FT   +LS+C
Sbjct: 251 NAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSAC 310

Query: 201 AHVGALNMGIFLHR--IACEMGFVE--SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           A+ G    G  +H   I  +  FV   ++ V NALV +Y+K G +  A  +F  M  +DV
Sbjct: 311 ANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDV 370

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           +SWN+++ GY   G  D+A+  FK M     + + ++++ ++ G  H GL E+ ++ F+ 
Sbjct: 371 VSWNTILSGYIDSGCLDKAVEVFKVMP----YKNDLSWMVMVSGYVHGGLSEDALKLFNQ 426

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
           M +  ++KP    Y   +   G  G L+
Sbjct: 427 MRAE-DVKPCDYTYAGAIAACGELGALK 453



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 106/238 (44%), Gaps = 3/238 (1%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  L  A  +F  +      +W  ++  +        A+  +N M  A   +P  +T+  
Sbjct: 383 SGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM-RAEDVKPCDYTYAG 441

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            + AC  + AL   ++LH  +++ G+E        L+  YA  G +  AR VF  MP  D
Sbjct: 442 AIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLD 501

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLH 213
            VSWN++IS   Q     EAL+L+++M  E +  D  + + +L++C H G ++ G  +  
Sbjct: 502 SVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFE 561

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSMIVGYGVHG 270
            +  + G          L+D+  + G +  A  +   M      S W +++ G   +G
Sbjct: 562 SMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNG 619



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 126/294 (42%), Gaps = 44/294 (14%)

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYTQASFHL 172
           + RS  +   V +T+L+  +AA G +  A + FD +P   RD V  N+++S + +AS   
Sbjct: 85  LFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAA 144

Query: 173 EALKLYERMRFE-DVGLDGFTLVCLLSSCA--HVGALNMGIFLHRIACEMGFVESVYVGN 229
            A+ ++  +     +  D ++   L+S+    H  A      LH    + G    + V N
Sbjct: 145 PAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSN 204

Query: 230 ALVDMYAKCGNLDSAF---CVFSRMRKRDVLSWNSMIVGY--------------GVHGRG 272
           AL+ +Y KC   ++++    V   M  +D L+W +M+VGY               V G+ 
Sbjct: 205 ALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKF 264

Query: 273 D-----------------EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           D                 +A   F++M+      D  TF  +L  C++ G    G +  H
Sbjct: 265 DVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHG-KSVH 323

Query: 316 MMVSRY--NLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             + R   N  P   +     LV LY + GK+  A  + +T +  D V W T+L
Sbjct: 324 GQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTIL 377


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 199/552 (36%), Positives = 286/552 (51%), Gaps = 57/552 (10%)

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQE 110
           P    WN L+    +S     A+     M       PD    +  L A   V  +   ++
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVLALVRMHGEGF-LPDATGVSCALSAVGDVGDVAVGEQ 177

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL--------------- 155
           LHG+V+++G      V+T L+  Y   G  +    VFD     D+               
Sbjct: 178 LHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQ 237

Query: 156 --------------------VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
                               VSW SI++C  Q    LEA+ L+  M+ E +  +  T+ C
Sbjct: 238 VSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPC 297

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L + A++ AL  G   H  +   GF   +YVG+ALVDMYAKCG +  A  +F  M  R+
Sbjct: 298 VLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRN 357

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           V+SWN+MI GY +HG  + A+  F+ M  +   PD +TF  +L  CS  G  EEG  YF+
Sbjct: 358 VVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFN 417

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRN 373
            M  ++ + P ++HY C+V L GRAGKL+ A ++IN   P +P   +W +LLGSC++H N
Sbjct: 418 EMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIIN-QMPFEPDGCIWGSLLGSCRVHGN 476

Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIE 433
           V + E+A +NL QLE  +AG+YVLL+ IYA  K  +GV R R ++K+ G+K   G SWIE
Sbjct: 477 VVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIE 536

Query: 434 IGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKS 491
           I N+VH  +  D SHP    I  KL+ +    + +G+  + D  L  V     +D L   
Sbjct: 537 IKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDIL--- 593

Query: 492 SAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHH 539
            + HSEKLA+A GL +T  GT L+++KNLR            S    R++ VRD  R+HH
Sbjct: 594 -SVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHH 652

Query: 540 FRDGLCSCGDYW 551
           F+DG CSC DYW
Sbjct: 653 FKDGKCSCADYW 664



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 123/326 (37%), Gaps = 69/326 (21%)

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G  R   V+++L+  Y   G    ARSV D MP R +V W+++I+ +        A  L 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 179 ERMRFEDV------------GL-----------------------DGFTLVCLLSSCAHV 203
           ERMR + V            GL                       D   + C LS+   V
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           G + +G  LH    + G      V  AL+DMY KCG  D    VF      DV S N+++
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR--- 320
            G   + +  EA+  F++ +  G   + +++  ++  C   G   E V+ F  M S    
Sbjct: 230 AGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIE 289

Query: 321 ---------------------------YNLKPGIKHY----GCLVDLYGRAGKLEKALEV 349
                                      ++L+ G  H       LVD+Y + G++  A  +
Sbjct: 290 PNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMI 349

Query: 350 INTSSPSDPVLWRTLLGSCKIHRNVE 375
                  + V W  ++G   +H   E
Sbjct: 350 FEAMPYRNVVSWNAMIGGYAMHGEAE 375



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 20/170 (11%)

Query: 220 GFVESVYVG-NALVDMYAKCGNLDSAFCVFSRMR----KRDVLSWNSMIVGYGVHGRGDE 274
           G      VG +AL+  +A  G+ + A+ +  RMR    + +V++WN ++ G    GR  +
Sbjct: 80  GMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARD 139

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV--EYFHMMVSRYNLKPGIKHYGC 332
           A+    +M   GF PD+    G+ C  S  G V +    E  H     Y +K G +   C
Sbjct: 140 AVLALVRMHGEGFLPDAT---GVSCALSAVGDVGDVAVGEQLH----GYVVKAGCRLDAC 192

Query: 333 ----LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
               L+D+YG+ G+ ++ + V + SS  D      L+    + RN ++ E
Sbjct: 193 VATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAG--LSRNAQVSE 240


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 187/528 (35%), Positives = 287/528 (54%), Gaps = 25/528 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++ A+ LF+++      +W ++I  +AQ+             L   +   +  ++T  L 
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQN-----GEVNLARKLFEVMPERNEVSWTAMLV 244

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
              +   +    EL      +  E  V     +M G+   G+++AA++VF+ M ERD  +
Sbjct: 245 GYIQAGHVEDAAEL----FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGT 300

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W+++I  Y Q  F +EAL  +  M +  V  +  +++ +L+ CA +  L+ G  +H    
Sbjct: 301 WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
              F   V+  +AL+ MY KCGNLD A  VF     +D++ WNSMI GY  HG G++A+ 
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F  M +AG  PD IT++G L  CS+ G V+EG E F+ M    +++PG +HY C+VDL 
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLL 480

Query: 338 GRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GR+G +E+A ++I N     D V+W  L+G+C++HRN EI E A K L++LE  +AG YV
Sbjct: 481 GRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYV 540

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK-SHPDADMIY 455
           LL+ IY      E  ++ RK I S  +  +PG SWIE   +VH F   D  +HP+   I 
Sbjct: 541 LLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAIL 600

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           R LE++       GY+ D S V       E+    S  YHSE+ A+A+GL   P+G  +R
Sbjct: 601 RILEKLDGLLMESGYSADGSFVL--HDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIR 658

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++KNLR            +   SR++I+RD  R+HHF+DG CSC DYW
Sbjct: 659 VMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 189/420 (45%), Gaps = 55/420 (13%)

Query: 44  LFNQIQNPQTQAWNSLIRAFA---QSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKAC 99
           LF ++ +    ++N+LI   +   Q+L    A        +AS+   P   +FT  L+  
Sbjct: 70  LFRRMPSRDLASYNALISGLSLRRQTLPDAAAA-------LASIPFPPSVVSFTSLLRGY 122

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
            R   L     L     +   ER  V  T L+ G    G +  AR +FD MP+RD+V+W 
Sbjct: 123 VRHGLLADAIRL----FQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWT 178

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE- 218
           +++S Y QA    EA  L++ M   +V     +   ++S  A  G +N+   L  +  E 
Sbjct: 179 AMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPER 234

Query: 219 ---------MGFVESVYVG-----------------NALVDMYAKCGNLDSAFCVFSRMR 252
                    +G++++ +V                  NA++  + + G +D+A  VF +M 
Sbjct: 235 NEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMC 294

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           +RD  +W++MI  Y  +    EA+S F++ML  G  P+  + + +L  C+   +++ G E
Sbjct: 295 ERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE 354

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372
             H  + R +    +     L+ +Y + G L+KA  V +T  P D V+W +++     H 
Sbjct: 355 -VHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQH- 412

Query: 373 NVEIGEIAMKNL--VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTT--PG 428
              +GE A+     ++L   S      +  + AC+   + V   R++  S  + ++  PG
Sbjct: 413 --GLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGK-VKEGREIFNSMTVNSSIRPG 469



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 39/199 (19%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM------ 282
           NA +   A+ GN++ A   F  M  R   S+N+++ GY  +   D A+  F++M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 283 ----LMAG-------------------FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
               L++G                   F P  ++F  LL G    GL+ + +  F  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVE--- 375
           R ++   +   G L+D    AG++ +A  + +     D V W  +L G C+  R  E   
Sbjct: 141 RNHVSYTVL-LGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARA 195

Query: 376 -IGEIAMKNLVQLEAASAG 393
              E+  +N+V   A  +G
Sbjct: 196 LFDEMPKRNVVSWTAMISG 214



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 11/132 (8%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L  A+ +F+  +      WNS+I  +AQ     QA+  ++ M +A +S PD  T+   L
Sbjct: 383 NLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMS-PDGITYIGAL 441

Query: 97  KACERVKALNKCQELHGFV-----IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
            AC     + + +E+   +     IR G E    +   L R    +G++E A  +  NMP
Sbjct: 442 TACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGR----SGLVEEAFDLIKNMP 497

Query: 152 -ERDLVSWNSII 162
            E D V W +++
Sbjct: 498 VEPDAVIWGALM 509


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 195/526 (37%), Positives = 293/526 (55%), Gaps = 20/526 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F ++      +WN++I    ++   +   F   H L+ S    D  T    L+ C 
Sbjct: 285 ARWVFYKMPTRNLVSWNAMISGCVRN-GLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCS 343

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +  +L   + LHG  IRS +E  +++ST ++  Y+  G ++ A  VF+ M +R++++W +
Sbjct: 344 QTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTA 402

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++    Q     +AL+L+ +M+ E +  +  T V L+ SCAH+G+L  G  +H     +G
Sbjct: 403 MLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLG 462

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFF 279
           F   +    ALVDMYAKCG ++ A  +FS     +DV+ WNSMI GYG+HG G +A+  +
Sbjct: 463 FAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIY 522

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
            +M+  G  P+  TFL LL  CSH  LVE+G+  F+ M   +N++P  KHY CLVDL  R
Sbjct: 523 HKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSR 582

Query: 340 AGKLEKALEVINTS--SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
           AG+ E+A  +I      P   VL   LL  C+ H+N+ +G      L+ L+A + G Y++
Sbjct: 583 AGRFEEAQALIEKMPFQPGTAVL-EALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIM 641

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ IYA  +  + V   R L+++ G+K TPG+S +E GN VH F   D SHP+ + IY  
Sbjct: 642 LSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHF 701

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           LE +    +  GY  D S V       E+   +    HSE+LAIAFGL TTP G+ +RI 
Sbjct: 702 LESLRSAVETSGYVPDTSCVLR--DVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRIT 759

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S    R++IVRD  R+HHF +G CSCGDYW
Sbjct: 760 KNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 174/368 (47%), Gaps = 4/368 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A+ +F+Q   P+    N+++  + QS    + +  +  M   +L   D+ + TF L
Sbjct: 79  SLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNL-EVDSCSCTFAL 137

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           KAC          E+    +  G E+   V ++++      G I  A+ VFD MP +D+V
Sbjct: 138 KACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVV 197

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            WNSII  Y QA     A +L+  M    +     T+  L+ +C  +G L +G  +H   
Sbjct: 198 CWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYV 257

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
             +G    + V  + VDMY+K G+++SA  VF +M  R+++SWN+MI G   +G   E+ 
Sbjct: 258 LGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESF 317

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F +++ +    D  T + LL GCS    +  G +  H    R + +  +     +VDL
Sbjct: 318 DLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATG-KILHGCAIR-SFESNLILSTAIVDL 375

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           Y + G L++A  V N     + + W  +L     + + E   + +   +Q E  +A    
Sbjct: 376 YSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAE-DALRLFAQMQEEGIAANSVT 434

Query: 397 LLATIYAC 404
            ++ +++C
Sbjct: 435 FVSLVHSC 442



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 128/279 (45%), Gaps = 3/279 (1%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
           E  K L   +  H  +I +       V+T L++ Y+    +EAAR VFD   +   +  N
Sbjct: 40  ESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCN 99

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           +++  Y Q+  + E L+L+  MR  ++ +D  +    L +CA      MG+ +   A E 
Sbjct: 100 AMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEK 159

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G  ++ +VG++++    K G +  A  VF  M  +DV+ WNS+I GY   G  D A   F
Sbjct: 160 GMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLF 219

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
            +M  +G  P  IT   L+  C   G ++ G +  H  V    L   I      VD+Y +
Sbjct: 220 FEMHGSGIKPSPITMTSLIQACGGIGNLKLG-KCMHGYVLGLGLGNDILVLTSFVDMYSK 278

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
            G +E A  V       + V W  ++  C   RN  +GE
Sbjct: 279 MGDIESARWVFYKMPTRNLVSWNAMISGCV--RNGLVGE 315


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 187/528 (35%), Positives = 287/528 (54%), Gaps = 25/528 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++ A+ LF+++      +W ++I  +AQ+             L   +   +  ++T  L 
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQN-----GEVNLARKLFEVMPERNEVSWTAMLV 244

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
              +   +    EL      +  E  V     +M G+   G+++AA++VF+ M ERD  +
Sbjct: 245 GYIQAGHVEDAAEL----FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGT 300

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W+++I  Y Q  F +EAL  +  M +  V  +  +++ +L+ CA +  L+ G  +H    
Sbjct: 301 WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
              F   V+  +AL+ MY KCGNLD A  VF     +D++ WNSMI GY  HG G++A+ 
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F  M +AG  PD IT++G L  CS+ G V+EG E F+ M    +++PG +HY C+VDL 
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLL 480

Query: 338 GRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GR+G +E+A ++I N     D V+W  L+G+C++HRN EI E A K L++LE  +AG YV
Sbjct: 481 GRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYV 540

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK-SHPDADMIY 455
           LL+ IY      E  ++ RK I S  +  +PG SWIE   +VH F   D  +HP+   I 
Sbjct: 541 LLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAIL 600

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           R LE++       GY+ D S V       E+    S  YHSE+ A+A+GL   P+G  +R
Sbjct: 601 RILEKLDGLLMESGYSADGSFVL--HDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIR 658

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++KNLR            +   SR++I+RD  R+HHF+DG CSC DYW
Sbjct: 659 VMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 191/423 (45%), Gaps = 61/423 (14%)

Query: 44  LFNQIQNPQTQAWNSLIRAFA---QSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKAC 99
           LF ++ +    ++N+LI   +   Q+L    A        +AS+   P   +FT  L+  
Sbjct: 70  LFRRMPSRDLASYNALISGLSLRRQTLPDAAAA-------LASIPFPPSVVSFTSLLRGY 122

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
            R   L     L     +   ER  V  T L+ G    G +  AR +FD MP+RD+V+W 
Sbjct: 123 VRHGLLADAIRL----FQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWT 178

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE- 218
           +++S Y QA    EA  L++ M   +V     +   ++S  A  G +N+   L  +  E 
Sbjct: 179 AMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPER 234

Query: 219 ---------MGFVESVYVG-----------------NALVDMYAKCGNLDSAFCVFSRMR 252
                    +G++++ +V                  NA++  + + G +D+A  VF +M 
Sbjct: 235 NEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMC 294

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           +RD  +W++MI  Y  +    EA+S F++ML  G  P+  + + +L  C+   +++ G E
Sbjct: 295 ERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE 354

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372
             H  + R +    +     L+ +Y + G L+KA  V +T  P D V+W +++     H 
Sbjct: 355 -VHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQH- 412

Query: 373 NVEIGEIAMKNL--VQLEAASAGDYVLLATIYACT---KDEEGVARTRKLIKSNGIKTT- 426
              +GE A+     ++L   S      +  + AC+   K +EG    R++  S  + ++ 
Sbjct: 413 --GLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEG----REIFNSMTVNSSI 466

Query: 427 -PG 428
            PG
Sbjct: 467 RPG 469



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 44/229 (19%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM------ 282
           NA +   A+ GN++ A   F  M  R   S+N+++ GY  +   D A+  F++M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 283 ----LMAG-------------------FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
               L++G                   F P  ++F  LL G    GL+ + +  F  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVE--- 375
           R ++      Y  L+     AG++ +A  + +     D V W  +L G C+  R  E   
Sbjct: 141 RNHVS-----YTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARA 195

Query: 376 -IGEIAMKNLVQLEA-----ASAGDYVLLATIYACTKDEEGVARTRKLI 418
              E+  +N+V   A     A  G+  L   ++    +   V+ T  L+
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLV 244



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 11/132 (8%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L  A+ +F+  +      WNS+I  +AQ     QA+  ++ M +A +S PD  T+   L
Sbjct: 383 NLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMS-PDGITYIGAL 441

Query: 97  KACERVKALNKCQELHGFV-----IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
            AC     + + +E+   +     IR G E    +   L R    +G++E A  +  NMP
Sbjct: 442 TACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGR----SGLVEEAFDLIKNMP 497

Query: 152 -ERDLVSWNSII 162
            E D V W +++
Sbjct: 498 VEPDAVIWGALM 509


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 202/636 (31%), Positives = 323/636 (50%), Gaps = 119/636 (18%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ--SLSPLQAIFY--------------- 75
           S +  L  A+ +F+ ++N  T +WNS+I ++A    L+   ++FY               
Sbjct: 280 SKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWN 339

Query: 76  ----------YNHMLMASLSR-------PDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
                     Y   ++  L R       P++ + T  L+A   +  LN  +E HG+V+R+
Sbjct: 340 CLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRN 399

Query: 119 GYERCVVVSTNLM-------------------------------RGYAANGVIEAARSVF 147
           G++  V V T+L+                                GY+  G+ E A  + 
Sbjct: 400 GFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLL 459

Query: 148 DNMPER----DLVSWNSIISCY-----------------------------------TQA 168
           + M +     DLV+WN +IS Y                                   +QA
Sbjct: 460 NQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQA 519

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
             + ++LK + +M+ E V  +  ++ CLL +CA +  L  G  +H ++   GF+E V+V 
Sbjct: 520 GNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVA 579

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
            AL+DMY+K  +L +A  VF R++ + + SWN MI+G+ + G G EAIS F +M   G  
Sbjct: 580 TALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG 639

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           PD+ITF  LL  C + GL+ EG +YF  M++ Y + P ++HY C+VDL GRAG L++A +
Sbjct: 640 PDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWD 699

Query: 349 VINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407
           +I+T     D  +W  LLGSC+IH+N++  E A KNL +LE  ++ +Y+L+  +Y+    
Sbjct: 700 LIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNR 759

Query: 408 EEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF 467
            E +   R+L+ + G++    WSWI+I  +VH F  D+K HPDA  IY +L +++   K 
Sbjct: 760 WEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKK 819

Query: 468 IGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------ 521
           +GY  D + V  +    E   +K    H+EKLAI +GL     G  +R++KN R      
Sbjct: 820 LGYVPDVNCVYQNMDEVEK--QKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCH 877

Query: 522 ------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                 S+  +R+L +RD VR+HHFR+G CSC D+W
Sbjct: 878 SAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 162/346 (46%), Gaps = 37/346 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F+++ NP+   WN  I    QS    + +  +  M  + L + +T T    L+
Sbjct: 184 LEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFL-KAETATIVRVLQ 242

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC ++ ALN  +++HG+V R G +  V +   L+  Y+ NG +E AR VFD+M  R+  S
Sbjct: 243 ACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSS 302

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS------------------- 198
           WNS+IS Y    F  +A  L+  +   D+  D  T  CLLS                   
Sbjct: 303 WNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ 362

Query: 199 ----------------SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
                           + + +G LNMG   H      GF   VYVG +L+DMY K  +L 
Sbjct: 363 GEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLT 422

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
           SA  VF  M+ R++ +WNS++ GY   G  ++A+    QM   G  PD +T+ G++ G +
Sbjct: 423 SAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYA 482

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
             G  +E +   H   S   L P +  +  L+    +AG    +L+
Sbjct: 483 MWGCGKEALAVLHQTKS-LGLTPNVVSWTALISGSSQAGNNRDSLK 527



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 121/262 (46%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WNS +  F  S   L  +      L       D+  ++  LK C RV  +    E+HG +
Sbjct: 100 WNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCL 159

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
           I+ G++  V +   LM  Y     +E A  VF  MP  + + WN  I    Q+    + +
Sbjct: 160 IKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGV 219

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           +L+ +M+F  +  +  T+V +L +C  +GALN    +H      G    V + N L+ MY
Sbjct: 220 ELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMY 279

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           +K G L+ A  VF  M  R+  SWNSMI  Y   G  ++A S F ++  +   PD +T+ 
Sbjct: 280 SKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWN 339

Query: 296 GLLCGCSHQGLVEEGVEYFHMM 317
            LL G    G  EE +     M
Sbjct: 340 CLLSGHFLHGYKEEVLNILQRM 361



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 4/243 (1%)

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCY--TQASFHLEALKLYERMRFE 184
           + NL+  Y   G   +A  VF     R+ + WNS +  +  +  S H+  L++++ +  +
Sbjct: 69  AKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHI-VLEVFKELHGK 127

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            V  D       L +C  V  + +G+ +H    + GF   VY+  AL++ Y +C  L+ A
Sbjct: 128 GVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKA 187

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             VF  M   + L WN  I+      +  + +  F++M  +    ++ T + +L  C   
Sbjct: 188 NQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKM 247

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364
           G +    +  H  V R+ L   +     L+ +Y + GKLE A  V ++    +   W ++
Sbjct: 248 GALN-AAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSM 306

Query: 365 LGS 367
           + S
Sbjct: 307 ISS 309


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 194/516 (37%), Positives = 298/516 (57%), Gaps = 22/516 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WNS+I A+ Q     +A+  +  M+   L+  D FT    L A   ++ L+   + HG 
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLN-VDMFTLASVLTAFTCLEDLSGGLQFHGQ 265

Query: 115 VIRSGYERCVVVSTNLMRGYA-ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
           +I++G+ +   V + L+  Y+   G +   R VF+ + E DLV WN+++S Y+Q    LE
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLE 325

Query: 174 -ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGNAL 231
            AL+ + +M+      +  + VC++S+C+++ + + G  +H +A +     + + V NAL
Sbjct: 326 DALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNAL 385

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           + MY+KCGNL  A  +F RM + + +S NSMI GY  HG   E++  F+ ML     P S
Sbjct: 386 IAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTS 445

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
           ITF+ +L  C+H G VEEG  YF+MM  ++N++P  +HY C++DL GRAGKL +A  +I 
Sbjct: 446 ITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLI- 504

Query: 352 TSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409
              P +P  + W +LLG+C+ H N+E+   A   ++QLE ++A  YV+L+ +YA     E
Sbjct: 505 ARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWE 564

Query: 410 GVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIG 469
            VA  RK ++  G+K  PG SWIE+  ++H FV +D SHP    IY  LEE+  + K  G
Sbjct: 565 EVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAG 624

Query: 470 YTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------ 521
           Y  D   +LV   G+   +  E    +HSEKLA+AFGL +T DG  + +VKNLR      
Sbjct: 625 YVPDVRWALVKDDGTRGGE-KEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCH 683

Query: 522 ------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                 S    R++ VRD  R+H F++G CSCGDYW
Sbjct: 684 NAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 165/334 (49%), Gaps = 6/334 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  LF+QI  P   ++N+LI A+A       A+  ++ M    L   D FT +  + AC 
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDM-DXFTLSAVITAC- 150

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVSWN 159
               +    +LH   + SG++  V V+  L+  Y  NG ++ A+ VF  M   RD VSWN
Sbjct: 151 -CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWN 209

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           S+I  Y Q     +AL L++ M    + +D FTL  +L++   +  L+ G+  H    + 
Sbjct: 210 SMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT 269

Query: 220 GFVESVYVGNALVDMYAKC-GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG-DEAIS 277
           GF ++ +VG+ L+D+Y+KC G +     VF  + + D++ WN+M+ GY  +    ++A+ 
Sbjct: 270 GFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALE 329

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+QM   G+ P+  +F+ ++  CS+     +G +   + +        I     L+ +Y
Sbjct: 330 CFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMY 389

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            + G L+ A  + +  +  + V   +++     H
Sbjct: 390 SKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQH 423



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 135/282 (47%), Gaps = 11/282 (3%)

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           ++  YA       A  +FD +PE DLVS+N++IS Y        AL L+  MR   + +D
Sbjct: 80  IIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMD 139

Query: 190 GFTLVCLLSSCA-HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
            FTL  ++++C   VG +     LH +A   GF   V V NAL+  Y K G+LD A  VF
Sbjct: 140 XFTLSAVITACCDDVGLIGQ---LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVF 196

Query: 249 SRMRK-RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
             M   RD +SWNSMIV YG H  G +A+  F++M+  G + D  T   +L   +    +
Sbjct: 197 YGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDL 256

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR-AGKLEKALEVINTSSPSDPVLWRTLLG 366
             G++ FH  + +            L+DLY +  G +    +V    +  D VLW T++ 
Sbjct: 257 SGGLQ-FHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVS 315

Query: 367 SCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACTK 406
                +N E  E A++   Q++       D   +  I AC+ 
Sbjct: 316 G--YSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSN 355



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL +C     L+ G  LH +  +     S Y  N  + +Y+KCG L  A   F  +   +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           V S+N++I  Y    R   A   F Q+      PD +++  L+   +  G     +  F 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIP----EPDLVSYNTLISAYADCGETAPALGLFS 129

Query: 316 MM 317
            M
Sbjct: 130 GM 131


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 185/513 (36%), Positives = 287/513 (55%), Gaps = 22/513 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W ++I  +AQ+   L A+     + +  +   D       L AC  +K+    +E+HG+
Sbjct: 420 SWTTIIAGYAQNECHLDALNLLRKVQLEKMD-VDPMMIGSILLACSGLKSEKLIKEIHGY 478

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           V++ G    +++   ++  Y    +++ AR VF+++  +D+VSW S+I+C       +EA
Sbjct: 479 VLKGGLAD-ILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEA 537

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L+L+  +   ++  D  TLV +L + A + +L  G  +H      GF     + N+LVDM
Sbjct: 538 LELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDM 597

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YA+CG +++A  +F+ +++RD++ W SMI   G+HG G +AI  F +M      PD ITF
Sbjct: 598 YARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITF 657

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           L LL  CSH GLV EG ++F +M + Y L+P  +HY CLVDL  R+  LE+A   +  + 
Sbjct: 658 LALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVR-NM 716

Query: 355 PSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           P +P   +W  LLG+C+IH N ++GE+A K L+QL   ++G+YVL++  +A       V 
Sbjct: 717 PIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVE 776

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
             R ++K N +K  PG SWIE+ N++H F+  DKSHP  + IY KL +     K  G  +
Sbjct: 777 EVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYR 836

Query: 473 DESLVAVSGSSSEDFLEKSSAY--HSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
            ++ +       E   EK+     HSE+LA+ +GL  T  GT LRI KNLR         
Sbjct: 837 AQTKLVFHDVCEE---EKTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFF 893

Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              S    R L+VRD  R+HHF  GLCSCGD+W
Sbjct: 894 KIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 180/382 (47%), Gaps = 18/382 (4%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+++       WN++I A   +   ++AI  Y  M +  +S  D FTF   LKAC   K
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSL-DAFTFPCVLKACGAFK 162

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN--MPERDLVSWNSI 161
                 E+HG  ++ GY   V V   L+  YA  G +  AR +FD+  M + D VSWNSI
Sbjct: 163 ERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSI 222

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           IS +      LEAL L+ RM+   V  + +T V  L +C     + +G  +H +  +   
Sbjct: 223 ISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNH 282

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
              VYV NAL+ MYA CG ++ A  VF  M  +D +SWN+++ G   +    +AI+ F+ 
Sbjct: 283 FTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQD 342

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK---HYG-CLVDLY 337
           M  +G  PD ++ L ++        +  G+E     V  Y +K GI    H G  L+D+Y
Sbjct: 343 MQDSGQKPDQVSVLNMIAASGRSANLLAGME-----VHAYAIKHGIDSNMHIGNSLIDMY 397

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
           G+   ++            D + W T++          +  + +   VQLE       ++
Sbjct: 398 GKCCCVKYMGSAFEYMPEKDLISWTTIIAG-YAQNECHLDALNLLRKVQLEKMDVDPMMI 456

Query: 398 LATIYACTKDEEGVARTRKLIK 419
            + + AC+       ++ KLIK
Sbjct: 457 GSILLACSG-----LKSEKLIK 473



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 152/311 (48%), Gaps = 10/311 (3%)

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG-FVI 116
           SL  AF QSL+      ++   L  +   P    ++  L+ C   KAL + Q+LH  F+ 
Sbjct: 21  SLKEAF-QSLT-----HFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLK 74

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
              Y   V + T  +  Y   G    A  VFD M ER + +WN++I     A  ++EA++
Sbjct: 75  TQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIE 134

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           LY+ MR   V LD FT  C+L +C       +G  +H +A + G+   V+V NAL+ MYA
Sbjct: 135 LYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYA 194

Query: 237 KCGNLDSAFCVFSR--MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           KCG+L  A  +F    M K D +SWNS+I  +   G   EA+S F++M   G   ++ TF
Sbjct: 195 KCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTF 254

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           +  L  C     ++ G    H ++ + N    +     L+ +Y   G++E A  V  +  
Sbjct: 255 VSALQACEGPTFIKIG-RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSML 313

Query: 355 PSDPVLWRTLL 365
             D V W TLL
Sbjct: 314 FKDCVSWNTLL 324



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 182/372 (48%), Gaps = 19/372 (5%)

Query: 38  LSYAQLLFNQ--IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           L  A++LF+   ++     +WNS+I A       L+A+  +  M    +   +T+TF   
Sbjct: 199 LGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGV-ESNTYTFVSA 257

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+ACE    +   + +H  +++S +   V VS  L+  YA  G +E A  VF +M  +D 
Sbjct: 258 LQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDC 317

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSWN+++S   Q   + +A+  ++ M+      D  +++ ++++      L  G+ +H  
Sbjct: 318 VSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAY 377

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A + G   ++++GN+L+DMY KC  +      F  M ++D++SW ++I GY  +    +A
Sbjct: 378 AIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDA 437

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCS---HQGLVEEGVEYFHMMVSRYNLKPGIKHY-- 330
           ++  +++ +     D +    +L  CS    + L++E        +  Y LK G+     
Sbjct: 438 LNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKE--------IHGYVLKGGLADILI 489

Query: 331 -GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
              +V++YG    ++ A  V  + +  D V W +++ +C +H  + I  + + N + +E 
Sbjct: 490 QNAIVNVYGELALVDYARHVFESINSKDIVSWTSMI-TCCVHNGLAIEALELFNSL-IET 547

Query: 390 ASAGDYVLLATI 401
               D + L ++
Sbjct: 548 NIEPDLITLVSV 559


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 194/516 (37%), Positives = 298/516 (57%), Gaps = 22/516 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WNS+I A+ Q     +A+  +  M+   L+  D FT    L A   ++ L+   + HG 
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLN-VDMFTLASVLTAFTCLEDLSGGLQFHGQ 265

Query: 115 VIRSGYERCVVVSTNLMRGYA-ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
           +I++G+ +   V + L+  Y+   G +   R VF+ + E DLV WN+++S Y+Q    LE
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLE 325

Query: 174 -ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGNAL 231
            AL+ + +M+      +  + VC++S+C+++ + + G  +H +A +     + + V NAL
Sbjct: 326 DALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNAL 385

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           + MY+KCGNL  A  +F RM + + +S NSMI GY  HG   E++  F+ ML     P S
Sbjct: 386 IAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTS 445

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
           ITF+ +L  C+H G VEEG  YF+MM  ++N++P  +HY C++DL GRAGKL +A  +I 
Sbjct: 446 ITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLI- 504

Query: 352 TSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409
              P +P  + W +LLG+C+ H N+E+   A   ++QLE ++A  YV+L+ +YA     E
Sbjct: 505 ARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWE 564

Query: 410 GVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIG 469
            VA  RK ++  G+K  PG SWIE+  ++H FV +D SHP    IY  LEE+  + K  G
Sbjct: 565 EVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAG 624

Query: 470 YTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------ 521
           Y  D   +LV   G+   +  E    +HSEKLA+AFGL +T DG  + +VKNLR      
Sbjct: 625 YVPDVRWALVKDDGTRGGE-KEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCH 683

Query: 522 ------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                 S    R++ VRD  R+H F++G CSCGDYW
Sbjct: 684 NAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 165/334 (49%), Gaps = 6/334 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  LF+QI  P   ++N+LI A+A       A+  ++ M    L   D FT +  + AC 
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDM-DGFTLSAVITAC- 150

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVSWN 159
               +    +LH   + SG++  V V+  L+  Y  NG ++ A+ VF  M   RD VSWN
Sbjct: 151 -CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWN 209

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           S+I  Y Q     +AL L++ M    + +D FTL  +L++   +  L+ G+  H    + 
Sbjct: 210 SMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT 269

Query: 220 GFVESVYVGNALVDMYAKC-GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG-DEAIS 277
           GF ++ +VG+ L+D+Y+KC G +     VF  + + D++ WN+M+ GY  +    ++A+ 
Sbjct: 270 GFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALE 329

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+QM   G+ P+  +F+ ++  CS+     +G +   + +        I     L+ +Y
Sbjct: 330 CFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMY 389

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            + G L+ A  + +  +  + V   +++     H
Sbjct: 390 SKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQH 423



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 136/282 (48%), Gaps = 11/282 (3%)

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           ++  YA       A  +FD +PE DLVS+N++IS Y        AL L+  MR   + +D
Sbjct: 80  IIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMD 139

Query: 190 GFTLVCLLSSCA-HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
           GFTL  ++++C   VG +     LH +A   GF   V V NAL+  Y K G+LD A  VF
Sbjct: 140 GFTLSAVITACCDDVGLIGQ---LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVF 196

Query: 249 SRMRK-RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
             M   RD +SWNSMIV YG H  G +A+  F++M+  G + D  T   +L   +    +
Sbjct: 197 YGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDL 256

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR-AGKLEKALEVINTSSPSDPVLWRTLLG 366
             G++ FH  + +            L+DLY +  G +    +V    +  D VLW T++ 
Sbjct: 257 SGGLQ-FHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVS 315

Query: 367 SCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACTK 406
                +N E  E A++   Q++       D   +  I AC+ 
Sbjct: 316 G--YSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSN 355



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 72/203 (35%), Gaps = 37/203 (18%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL +C     L+ G  LH +  +     S Y  N  + +Y+KCG L  A   F  +   +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF----------------LGLLC 299
           V S+N++I  Y    R   A   F Q+      PD +++                LGL  
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIP----EPDLVSYNTLISAYADCGETAPALGLFS 129

Query: 300 GCSHQGLVEEG----------------VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
           G    GL  +G                +   H +         +     L+  YG+ G L
Sbjct: 130 GMREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDL 189

Query: 344 EKALEVI-NTSSPSDPVLWRTLL 365
           + A  V        D V W +++
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMI 212


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 189/529 (35%), Positives = 294/529 (55%), Gaps = 17/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM--ASLSRPDTFTFTFT 95
           L+ A+ LF+++      +W++++ A A+   P  A+  Y  ML    S    + FT +  
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSA 168

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L A    +     +ELH  V+R G +   VV + L   YA  G ++ ARSVFD MP RD+
Sbjct: 169 LAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDV 228

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW +++  Y  A    E  +L+ RM    +  + FT   +L +CA   +  +G  +H  
Sbjct: 229 VSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGR 288

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             +    +S +  +ALV MY+K G++ +A  VF  M K D++SW +MI GY  +G+ DEA
Sbjct: 289 MTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEA 348

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           + +F  +L +G  PD +TF+G+L  C+H GLV++G+  FH +   Y ++    HY C++D
Sbjct: 349 LRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVID 408

Query: 336 LYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           L  R+G  E+A E+INT S   +  LW +LLG C+IH+NV +   A + L ++E  +   
Sbjct: 409 LLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPAT 468

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YV LA IYA     + V  TR++++  GI   P  SWIE+G ++H F+V DK HP A+ +
Sbjct: 469 YVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQV 528

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y  L+++  + +  GY  D   V       +   ++   YHSE+LA+AFG+  TP G  +
Sbjct: 529 YALLKKLYVKMREEGYVADTGFVLHDVEDEQK--QQDIGYHSERLAVAFGIIATPKGAPI 586

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++ KNLR            S    R++IVRD  R+HHF++G CSC DYW
Sbjct: 587 KVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 199/568 (35%), Positives = 308/568 (54%), Gaps = 28/568 (4%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQL-LFNQIQNPQTQAWNSLI 60
           GL+ HA  + L    Q   +    L+N Y+    + L Y+ L +F+   +     W+S+I
Sbjct: 39  GLQLHAHIIKL--GLQTIPLLSHHLINFYS---KTHLPYSSLQIFHDSPHKSATTWSSVI 93

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
            +FAQ+  PL ++ Y+  ML   +  PD   F    K+C  + +L   + LH F +++ Y
Sbjct: 94  SSFAQNDLPLLSLNYFRLMLRQGVP-PDDHIFPSATKSCGILSSLPVAKMLHCFALKTAY 152

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
              + V ++++  YA  G I  A +VFD MP R++VSW+ +I  Y Q     E+L+L++R
Sbjct: 153 HLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKR 212

Query: 181 --MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
             +  E+ G++ FTL  +L  C     L MG  +H ++ +  F  S +V ++L+ +Y+KC
Sbjct: 213 FLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKC 272

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGL 297
           G ++ A+ VF  +  R++  WN+M++    H   D+    F +M  + G   + ITFL +
Sbjct: 273 GVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFLCV 332

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           L  CSH GLVE+G  YF +M   Y ++PG +HY  +VDL GRAGKL  A+++I    P +
Sbjct: 333 LYACSHAGLVEKGKYYFELM-KDYGIEPGTQHYSTMVDLLGRAGKLNDAVKLIE-EMPME 390

Query: 358 PV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415
           P   +W  LL  C++H N ++       + +L + S+G +V+L+  YA     E  A+ R
Sbjct: 391 PTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAAAGRWEEAAKAR 450

Query: 416 KLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES 475
           K+++  GIK   G SW+E GN++H F   D+SH  +  IY KL+E+       GY  D S
Sbjct: 451 KMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEEMDKAGYVADTS 510

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
            V       E    +S  YHSE+LAIAFG  T P G  +R++KNLR            S 
Sbjct: 511 FVLKEVDGEEK--SRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVCGDCHTAIKFISK 568

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              R +IVRD  R+H F DG C+CGDYW
Sbjct: 569 CTGRVIIVRDNNRFHRFEDGKCTCGDYW 596



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 158/340 (46%), Gaps = 11/340 (3%)

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           TL +    ++L K  +LH  +I+ G +   ++S +L+  Y+   +  ++  +F + P + 
Sbjct: 26  TLLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKS 85

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
             +W+S+IS + Q    L +L  +  M  + V  D         SC  + +L +   LH 
Sbjct: 86  ATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHC 145

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            A +  +   ++VG++++DMYAKCG++  A  VF  M  R+V+SW+ +I GY   G  DE
Sbjct: 146 FALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDE 205

Query: 275 AISFFKQMLMAGFHP--DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           ++  FK+ L+   +   +  T   +L  C    L++ G    H +  + +          
Sbjct: 206 SLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMG-RLIHGLSFKTSFDSSCFVASS 264

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           L+ LY + G +E+A +V    +  +  +W  +L +C  H + +        +  +    A
Sbjct: 265 LISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKA 324

Query: 393 GDYVLLATIYACTKDEEGVARTRK----LIKSNGIKTTPG 428
                L  +YAC+    G+    K    L+K  GI+  PG
Sbjct: 325 NFITFLCVLYACS--HAGLVEKGKYYFELMKDYGIE--PG 360


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 204/553 (36%), Positives = 300/553 (54%), Gaps = 41/553 (7%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQ----AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD 88
           S +  L +A  LF ++     +     W ++I  +AQ     +A+  +  M     SRP+
Sbjct: 441 SQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCG-SRPN 499

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIR---------SGYERCVVVSTNLMRGYAANGV 139
             T    L AC  V AL   +E H + I+          G +   V++  L+  YA    
Sbjct: 500 VVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVIN-GLIDMYAKCQS 558

Query: 140 IEAARSVFDNM--PERDLVSWNSIISCYTQASFHLEALKLYERMRFED--VGLDGFTLVC 195
            E AR +FD++   +RD+V+W  +I  Y Q      AL+L+  M   D  +  + FTL C
Sbjct: 559 TEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSC 618

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESV--YVGNALVDMYAKCGNLDSAFCVFSRMRK 253
            L +CA + AL  G  +H       F  SV  +V N L+DMY+K G++D+A  VF  M +
Sbjct: 619 ALVACARLAALRFGRQVHAYVLR-NFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQ 677

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           R+ +SW S++ GYG+HGRG++A+  F +M      PD ITFL +L  CSH G+V+ G+ +
Sbjct: 678 RNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINF 737

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHR 372
           F+ M   + + PG +HY C+VDL+GRAG+L +A+++IN       PV+W  LL +C++H 
Sbjct: 738 FNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHS 797

Query: 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWI 432
           NVE+GE A   L++LE+ + G Y LL+ IYA  +  + VAR R  +K  GIK  PG SWI
Sbjct: 798 NVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWI 857

Query: 433 EIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES--LVAVSGSSSEDFLEK 490
           +    V  F V D+SHP +  IY  L +++ R K IGY    S  L  V      D L +
Sbjct: 858 QGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFE 917

Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-------SIAY-----SRDLIVRDRVRYH 538
               HSEKLA+A+G+ T      +RI KNLR       +I Y       ++I+RD  R+H
Sbjct: 918 ----HSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFH 973

Query: 539 HFRDGLCSCGDYW 551
           HF++G CSC  YW
Sbjct: 974 HFKNGSCSCKGYW 986



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 194/424 (45%), Gaps = 54/424 (12%)

Query: 35  SSSLSYAQLLFNQIQNPQTQA--WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S+S +YA LL  ++    +    WN LIR      SP      Y  M     + PD +TF
Sbjct: 204 SNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWT-PDHYTF 262

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
            F  KAC  + +L+    LH  V RSG+   V V   ++  Y   G +  A ++FD++  
Sbjct: 263 PFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCH 322

Query: 153 R---DLVSWNSIISCYTQASFHLEALKLYERMRFEDV-GLDGFTLVCLLSSCAHVGALNM 208
           R   DLVSWNS++S Y  AS    AL L+ +M    +   D  +LV +L +CA + A   
Sbjct: 323 RGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLR 382

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G  +H  +   G V+ V+VGNA+VDMYAKCG ++ A  VF RM+ +DV+SWN+M+ GY  
Sbjct: 383 GRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQ 442

Query: 269 HGR-----------------------------------GDEAISFFKQMLMAGFHPDSIT 293
            GR                                   G EA+  F+QM   G  P+ +T
Sbjct: 443 AGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVT 502

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK-----PG---IKHYGCLVDLYGRAGKLEK 345
            + LL  C   G +  G E  H    ++ L      PG   +K    L+D+Y +    E 
Sbjct: 503 LVSLLSACVSVGALLHGKET-HCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEV 561

Query: 346 ALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA-SAGDYVLLATIY 402
           A ++ ++ SP D   V W  ++G    H +          + +++ +    D+ L   + 
Sbjct: 562 ARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALV 621

Query: 403 ACTK 406
           AC +
Sbjct: 622 ACAR 625



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 135/313 (43%), Gaps = 18/313 (5%)

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           L+R F      LQ+ F    +L  +         T  + A +   +L   + LH   I  
Sbjct: 137 LLRCFPIKSKLLQSQFTNTRLLSCA---------TIPITALKECNSLAHAKLLHQQSIMQ 187

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER--DLVSWNSIISCYTQASFHLEALK 176
           G      ++TNL+  Y A+     A  + + +P     +  WN +I          +   
Sbjct: 188 GL--LFHLATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFT 245

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           LY +M+      D +T   +  +CA++ +L++G  LH      GF  +V+V NA+V MY 
Sbjct: 246 LYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYG 305

Query: 237 KCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF-HPDSI 292
           KCG L  A  +F  +  R   D++SWNS++  Y      + A++ F +M       PD I
Sbjct: 306 KCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVI 365

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           + + +L  C+       G +  H    R  L   +     +VD+Y + GK+E+A +V   
Sbjct: 366 SLVNILPACASLAASLRGRQ-VHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQR 424

Query: 353 SSPSDPVLWRTLL 365
               D V W  ++
Sbjct: 425 MKFKDVVSWNAMV 437


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 204/535 (38%), Positives = 289/535 (54%), Gaps = 46/535 (8%)

Query: 50  NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ 109
           +P  Q WN +I ++ +   P  A+  Y  +        D F     LKAC +V      +
Sbjct: 122 SPSAQ-WNFVITSYTKRNQPRNALNVYAQLRKMDFEV-DNFMAPSVLKACGQVSWTQLGK 179

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW----NSIISCY 165
           E+HGFV++ G +R V V   LM  Y     +E AR VFD M ERD+VSW     +++  Y
Sbjct: 180 EIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMY 239

Query: 166 TQASFHLEALKLYERMRFEDVGLDGFTLV---CLLSSCAHVGALNMGIFLH-RIACEMGF 221
            +      A +L+        GL   T+V    +++ C     L  G  L  R+  E  F
Sbjct: 240 AKCGHLGLARQLFN-------GLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIF 292

Query: 222 VESVYVGN------------ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
              + + N            ALVDMYAKCG++++A  +F     RD+  WN++I G+ +H
Sbjct: 293 PNEITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMH 352

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G G+EA+  F +M   G  P+ ITF+GLL  CSH GLV EG + F  MV  + L P I+H
Sbjct: 353 GYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEH 412

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
           YGC+VDL GRAG L++A E+I  S P  P  ++W  L+ +C++H+N ++GE+A   L+++
Sbjct: 413 YGCMVDLLGRAGLLDEAHEMIK-SMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEI 471

Query: 388 EAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKS 447
           E  + G  VL++ IYA        A  RK +K+ G+K  PG S IE+   VH+F++ D+S
Sbjct: 472 EPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQS 531

Query: 448 HPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLAT 507
           HP    I   L E+  +    GY  D S V ++    E   E +  YHSEKLA+AFGL +
Sbjct: 532 HPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEK--ETALTYHSEKLAMAFGLIS 589

Query: 508 TPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           T   T +RIVKNLR            S  Y R +IVRDR R+HHFR+G CSCGDY
Sbjct: 590 TAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644


>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Brachypodium distachyon]
          Length = 580

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 191/511 (37%), Positives = 290/511 (56%), Gaps = 18/511 (3%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           ++SL RA      PL A+ +Y  +L A+L    +F FT   KAC  + AL     +H   
Sbjct: 73  FSSLARAATHQGLPLAALAFYRCLLSAALPF-SSFAFTAVAKACADLSALRTGMTVHAHS 131

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
           I  G+     V T L+  Y+  G +  AR +FD + ++++V+WN++IS Y Q     + +
Sbjct: 132 ILLGFGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGI 191

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           ++Y+ M+      D  T V  LS+CA  GAL++G  + R         SV++G+ALV+MY
Sbjct: 192 EVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLGSALVNMY 251

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           A+CG +D A   F  +++R+V++W SMI GYG+HG G EAI  +  M   G  P+ +TF+
Sbjct: 252 ARCGVVDKARQWFDVLQERNVVTWTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFV 311

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
            +L  C+H GL+ EG + F  M   Y L P ++HY  +VD+YGRAG+LE+A++ I  S P
Sbjct: 312 AVLSACAHAGLITEGRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQFIRDSMP 371

Query: 356 SD--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
            D  P +W  +LG+CK+H+N  +G    + L++LE  +   +VLL+ IYA +     V +
Sbjct: 372 GDPGPEVWTAILGACKMHKNFSLGVEVAERLIRLEPENPSYHVLLSNIYALSGKMYHVEK 431

Query: 414 TRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD 473
            R  +    +K   G+S IE+G   H F + +KSH     IY+ LEE++HR    GY  +
Sbjct: 432 VRNTMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQKTREIYQYLEELVHRISAAGYMPE 491

Query: 474 ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS-LRIVKNLR----------- 521
              V       E   E +  YHSEKLA+A+GL  +   T+ LR++KNLR           
Sbjct: 492 TESVLHELEEEE--REGALRYHSEKLAVAYGLMMSAGSTTPLRVIKNLRICSDCHLAIKF 549

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S   +R++IVRD+ R+HHF+DG CSC +YW
Sbjct: 550 MSAVENREIIVRDKHRFHHFKDGKCSCLEYW 580



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 146/303 (48%), Gaps = 6/303 (1%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           +   ++ H  ++ +G+ RC+ + T L     A G    A  V  + P  D   ++S+   
Sbjct: 20  IGPLKQAHARLVVTGHSRCLPLITKLANLAVAAGAAPYAHLVATSHPASDSFLFSSLARA 79

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
            T     L AL  Y  +    +    F    +  +CA + AL  G+ +H  +  +GF   
Sbjct: 80  ATHQGLPLAALAFYRCLLSAALPFSSFAFTAVAKACADLSALRTGMTVHAHSILLGFGSD 139

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
            +V  ALV +Y+KCG L  A  +F  +R ++V++WN+MI GY  +G  ++ I  +K+M +
Sbjct: 140 RFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGIEVYKEMKV 199

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
           A   PDS+TF+  L  C+  G ++ G E    +VS   +   +     LV++Y R G ++
Sbjct: 200 AKAVPDSMTFVATLSACAQAGALDLGREVERRIVSE-RMDISVFLGSALVNMYARCGVVD 258

Query: 345 KALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIY 402
           KA +  +     + V W +++    +H +   G  A+K  +L++ +     D   +A + 
Sbjct: 259 KARQWFDVLQERNVVTWTSMIAGYGMHGH---GHEAIKLYHLMRCKGPPPNDVTFVAVLS 315

Query: 403 ACT 405
           AC 
Sbjct: 316 ACA 318



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 145/316 (45%), Gaps = 37/316 (11%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF+ I++    AWN++I  + Q+    Q I  Y  M +A  + PD+ TF  TL 
Sbjct: 156 LPVARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGIEVYKEMKVAK-AVPDSMTFVATLS 214

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC +  AL+  +E+   ++    +  V + + L+  YA  GV++ AR  FD + ER++V+
Sbjct: 215 ACAQAGALDLGREVERRIVSERMDISVFLGSALVNMYARCGVVDKARQWFDVLQERNVVT 274

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W S+I+ Y       EA+KLY  MR +    +  T V +LS+CAH G +  G      AC
Sbjct: 275 WTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVAVLSACAHAGLITEG--RDAFAC 332

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
               ++ VY     V+ Y                         SM+  YG  GR +EA+ 
Sbjct: 333 ----MKRVYGLAPRVEHYC------------------------SMVDMYGRAGRLEEAMQ 364

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV-DL 336
           F +  +     P+  T   +L  C        GVE    ++    L+P    Y  L+ ++
Sbjct: 365 FIRDSMPGDPGPEVWT--AILGACKMHKNFSLGVEVAERLI---RLEPENPSYHVLLSNI 419

Query: 337 YGRAGKLEKALEVINT 352
           Y  +GK+    +V NT
Sbjct: 420 YALSGKMYHVEKVRNT 435


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 190/546 (34%), Positives = 296/546 (54%), Gaps = 25/546 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA      L YA  +F+ +       W++LI  F       +A   +  ML+ 
Sbjct: 243 GTALLDMYA--KCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVE 300

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            L      +    L+ C  +  L+   +LH  + +SG    +  S +L+  YA  G+I  
Sbjct: 301 GLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINE 360

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A   FD +  +D +S+ +++S   Q     EA  ++++M+  ++  D  T+V L+ +C+H
Sbjct: 361 ATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSH 420

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL  G   H      G      + N+L+DMYAKCG +D +  VF +M  RDV+SWN+M
Sbjct: 421 LAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTM 480

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I GYG+HG G EA + F  M   GF PD +TF+ L+  CSH GLV EG  +F  M  +Y 
Sbjct: 481 IAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYG 540

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           + P ++HY C+VDL  R G L++A + I +    +D  +W  LLG+C+IH+N+++G+   
Sbjct: 541 ILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVS 600

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           + + +L     G++VLL+ I++     +  A  R + K  G K +PG+SWIEI   +H F
Sbjct: 601 RIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAF 660

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA----YHSE 497
           V  D+SHP +  IY +L+ IM   K +GY  D S V       +D  E+       YHSE
Sbjct: 661 VGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVL------QDLEEEEKEKALLYHSE 714

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLAIAFG+ +  +  ++ + KNLR            ++  +R +IVRD  R+HHF++G C
Sbjct: 715 KLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQC 774

Query: 546 SCGDYW 551
           SCG++W
Sbjct: 775 SCGNFW 780



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 167/337 (49%), Gaps = 9/337 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQA-IFYYNHMLMASLSRPDTFTFTFTL 96
           L+ A+ +F++I  P  +A+N+LIRA++  L P  A I  Y  ML   ++ P+ +TF F L
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSW-LGPFHAAIDLYRSMLRFRVA-PNKYTFPFVL 107

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           KAC  +  L   + +H     +G    + VST L+  Y        AR+VF  MP RD+V
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 157 SWNSIISCY-TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           +WN++++ Y     +H     L +      +  +  TLV LL   A  GAL  G  +H  
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAY 227

Query: 216 ---ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
              AC     E V +G AL+DMYAKC  L  A  VF  M  R+ ++W+++I G+ +  R 
Sbjct: 228 CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRM 287

Query: 273 DEAISFFKQMLMAGFHPDSITFLG-LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
            EA + FK ML+ G    S T +   L  C+    +  G +  H ++++  +   +    
Sbjct: 288 TEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASN 346

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            L+ +Y +AG + +A    +  +  D + +  LL  C
Sbjct: 347 SLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGC 383



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 7/241 (2%)

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT-QASFHLEALKLYERMRFEDVGLD 189
           +  + + G +  AR VFD +P  D  ++N++I  Y+    FH  A+ LY  M    V  +
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFH-AAIDLYRSMLRFRVAPN 99

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
            +T   +L +C+ +  L  G  +H  A   G    ++V  AL+D+Y +C     A  VF+
Sbjct: 100 KYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFA 159

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVE 308
           +M  RDV++WN+M+ GY  HG    AI+    M    G  P++ T + LL   +  G + 
Sbjct: 160 KMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALF 219

Query: 309 EGVEYFHMMVSRYNLKPGIKHY---GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +G    H    R  L+   +       L+D+Y +  +L  A  V +     + V W  L+
Sbjct: 220 QGTS-IHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALI 278

Query: 366 G 366
           G
Sbjct: 279 G 279


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 174/477 (36%), Positives = 278/477 (58%), Gaps = 15/477 (3%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D  T+   L+ C  ++ LN  +++H  ++R G+   V  S  ++  Y   G +  A+ VF
Sbjct: 236 DNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLYAQRVF 295

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           DN   +++V   +I+  Y Q     EAL L+ +M  ++V  + +T    L+S A +  L 
Sbjct: 296 DNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLK 355

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  LH +  + G+   V VGNALV+MYAK G+++ A   FS M  RD+++WN+MI G+ 
Sbjct: 356 HGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFS 415

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            HG G E +  F +M++AG  P+ ITF+G+L  CSH G VE+G+ YF+ ++ ++N++P +
Sbjct: 416 HHGLGREGLEAFDRMMIAGEIPNRITFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQPDL 475

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           +HY C+V L  +AG  + A + + T+    D V WR LL +C + RN  +G+   +  + 
Sbjct: 476 QHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRALLNACYVRRNFRLGKKVAEYAIY 535

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
                +G YVLL+ I+A +++ EGVA  R L+   G+K  PG SWI I NQ H F+ ++ 
Sbjct: 536 KYPNDSGVYVLLSNIHAKSREWEGVAEVRSLMNKRGVKKEPGVSWIGIRNQTHVFLAEEN 595

Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLA 506
            HP+  +IY K++E++ + + +GY+ D  +  V     E+  E + +YHSEKLA+A+GL 
Sbjct: 596 QHPEITLIYAKIKEVLSKIRPLGYSPD--VAGVFHDVDEEQREDNLSYHSEKLAVAYGLM 653

Query: 507 TTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            TP+ + L + KN+R            S    R +++RD  R+HHFRDG CSC DYW
Sbjct: 654 KTPENSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFRDGQCSCCDYW 710



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 172/362 (47%), Gaps = 6/362 (1%)

Query: 6   HARYVGLNKARQAHEIHG-EWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFA 64
           H   +  N++ +A +++    L+N Y +    ++  A+ +F+ +      +W ++++ + 
Sbjct: 54  HGHLIVTNQSSRAKDVYQINSLINLY-VKCGETVR-ARKVFDLMPERNVVSWCAMMKGYQ 111

Query: 65  QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCV 124
            S    + +  +  M+ +  SRP+ F  T   K+C     + + ++ HG  ++SG     
Sbjct: 112 NSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHE 171

Query: 125 VVSTNLMRGYA-ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
            V   L+  Y+  +G  EA R V D++P  DL  ++S +S Y +     E  ++  RM  
Sbjct: 172 FVRNTLVYMYSLCSGNGEAIR-VLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAK 230

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           ED+ LD  T +  L  C+++  LN+   +H     +GF   V    A+++MY KCG +  
Sbjct: 231 EDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLY 290

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  VF     ++++   +++  Y      +EA++ F +M      P+  TF   L   + 
Sbjct: 291 AQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAE 350

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
             L++ G +  H +V +   +  +     LV++Y ++G +E A +  +  +  D V W T
Sbjct: 351 LSLLKHG-DLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNT 409

Query: 364 LL 365
           ++
Sbjct: 410 MI 411


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 185/525 (35%), Positives = 285/525 (54%), Gaps = 19/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+++      +W ++I  F  S +  +A   +  M     +   + TFT  ++A  
Sbjct: 171 ARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMW-EEFNDGRSRTFTTMIRASA 229

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +  +   +++H   ++ G      VS  L+  Y+  G IE A  VFD MPE+  V WNS
Sbjct: 230 GLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNS 289

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           II+ Y    +  EAL  Y  MR     +D FT+  ++  CA + +L      H      G
Sbjct: 290 IIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRG 349

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +   +    ALVD Y+K G ++ A+ VF+RMR+++V+SWN++I GYG HG+G+EA+  F+
Sbjct: 350 YDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFE 409

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QML  G  P+ +TFL +L  CS+ GL E G E F+ M   + +KP   HY C+V+L GR 
Sbjct: 410 QMLREGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGRE 469

Query: 341 GKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G L++A E+I  S+P  P   +W TLL +C++H N+E+G++A +NL  +E     +Y++L
Sbjct: 470 GLLDEAYELIR-SAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVL 528

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
             +Y  +   +  A   + +K  G++  P  +WIE+  Q + F+  DKSH     IY K+
Sbjct: 529 LNLYNSSGKLKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKV 588

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
             +M      GY ++   +       E  + K   YHSEKLAIAFGL  TP  T L+I +
Sbjct: 589 NNMMVEISRHGYVEENKALLPDVDEEEQRILK---YHSEKLAIAFGLINTPHWTPLQITQ 645

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             R            ++   R+++VRD  R+HHFRDG CSCGDYW
Sbjct: 646 GHRVCGDCHSAIKFIAMVTGREIVVRDASRFHHFRDGSCSCGDYW 690



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 155/317 (48%), Gaps = 6/317 (1%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T+   + AC  ++++   + +  +++ SG+E  + V   ++  +   G++  AR +FD M
Sbjct: 119 TYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEM 178

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           PE+D+ SW ++I  +  +    EA  L+  M  E       T   ++ + A +G + +G 
Sbjct: 179 PEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGR 238

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H  A + G  +  +V  AL+DMY+KCG+++ A CVF +M ++  + WNS+I  Y +HG
Sbjct: 239 QIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHG 298

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
             +EA+SF+ +M  +G   D  T   ++  C+    +E   +  H  + R      I   
Sbjct: 299 YSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQA-HAALVRRGYDTDIVAN 357

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--E 388
             LVD Y + G++E A  V N     + + W  L+     H     GE A++   Q+  E
Sbjct: 358 TALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQ---GEEAVEMFEQMLRE 414

Query: 389 AASAGDYVLLATIYACT 405
                    LA + AC+
Sbjct: 415 GMIPNHVTFLAVLSACS 431



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 148/324 (45%), Gaps = 44/324 (13%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S   S+  A  +F+Q+    T  WNS+I ++A      +A+ +Y  M   S ++ D FT 
Sbjct: 264 SKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEM-RDSGAKIDHFTI 322

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
           +  ++ C R+ +L   ++ H  ++R GY+  +V +T L+  Y+  G +E A  VF+ M  
Sbjct: 323 SIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRR 382

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           ++++SWN++I+ Y       EA++++E+M  E +  +  T + +LS+C++ G    G  +
Sbjct: 383 KNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEI 442

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR--KRDVLSWNSMIVGYGVHG 270
                                           F   SR    K   + +  M+   G  G
Sbjct: 443 --------------------------------FYSMSRDHKVKPRAMHYACMVELLGREG 470

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR-YNLKP-GIK 328
             DEA    +    A F P +  +  LL  C     + E +E   +     Y ++P  + 
Sbjct: 471 LLDEAYELIRS---APFKPTTNMWATLLTACR----MHENLELGKLAAENLYGMEPEKLC 523

Query: 329 HYGCLVDLYGRAGKLEKALEVINT 352
           +Y  L++LY  +GKL++A  V+ T
Sbjct: 524 NYIVLLNLYNSSGKLKEAAGVLQT 547


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 190/569 (33%), Positives = 299/569 (52%), Gaps = 55/569 (9%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           +  L  A+ L + +  P   AWN++I  + +     +A   +  M    + + D +T+T 
Sbjct: 230 NDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGI-QEDEYTYTS 288

Query: 95  TLKAC----ERVKALNKCQELHGFVIRS---------------------GYERCV----- 124
            + AC    E++   N  +++HG+++R+                      Y+R +     
Sbjct: 289 LISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRV 348

Query: 125 --------VVSTN-LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
                   ++S N ++ GY     IE A S+F  MPER++++W  +IS   Q  F  E L
Sbjct: 349 FDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGL 408

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           KL+ +M+ E +    +     +++C+ +G+L+ G  +H     +G    +  GNAL+ MY
Sbjct: 409 KLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMY 468

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           ++CG ++SA  VF  M   D +SWN+MI     HG G +AI  F+QM+     PD ITFL
Sbjct: 469 SRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFL 528

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS- 354
            +L  C+H GL++EG  YF  M +RY + PG  HY  L+DL  RAG   KA  VI +   
Sbjct: 529 TILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPF 588

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
            +   +W  LL  C+IH N+E+G  A   L++L     G Y++L+ +YA     + VAR 
Sbjct: 589 EAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARV 648

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
           R L++  G+K  PG SW+E+ N VH F+VDD  HP+   +Y  L+++++  K +GY  D 
Sbjct: 649 RLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDT 708

Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
             V     S     E S + HSEKLA+ +G+   P G ++R+ KNLR            S
Sbjct: 709 KFVLHDMESEHK--EHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYIS 766

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               R+++VRDR R+HHF++G CSCG+YW
Sbjct: 767 KVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 183/475 (38%), Gaps = 121/475 (25%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS-----------LSPL--QA 72
           L+N Y    SS+++YA+ LF++I  P   A  +L+ A++ S            +PL  + 
Sbjct: 46  LINIYC--KSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRD 103

Query: 73  IFYYNHMLMA---------------SLSR----PDTFTFTFTLKACERVKALNK-CQELH 112
              YN M+ A                + R    PD FTF+  L A   +    + CQ LH
Sbjct: 104 TVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLH 163

Query: 113 GFVIRSGYERCVVVSTNLMRGYA---------ANGVIEAARSVFDNMPERDL-------- 155
             VI+ G      V+  L+  Y          ++ ++ +AR VFD  P+  +        
Sbjct: 164 CEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTM 223

Query: 156 -------------------------VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190
                                    V+WN++IS Y +   + EA   + RM    +  D 
Sbjct: 224 IAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDE 283

Query: 191 FTLVCLLSSCA----HVGALNMGIFLH----RIACEMGFVESVYVGNALVDMYAKCGNLD 242
           +T   L+S+C      +G  N G  +H    R   E      + V NAL+  Y K   + 
Sbjct: 284 YTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMI 343

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGY-------------------------------GVHGR 271
            A  VF +M  RD++SWN+++ GY                                 +G 
Sbjct: 344 EARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGF 403

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           G+E +  F QM   G  P    F G +  CS  G ++ G +  H  V R     G+    
Sbjct: 404 GEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNG-QQIHSQVIRLGHDSGLSAGN 462

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH----RNVEIGEIAMK 382
            L+ +Y R G +E A  V  T    D V W  ++ +   H    + +E+ E  MK
Sbjct: 463 ALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMK 517



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 49/254 (19%)

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE------------------ 152
           +H  ++ SG++    +   L+  Y  +  I  AR +FD +P+                  
Sbjct: 27  VHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGN 86

Query: 153 ---------------RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
                          RD VS+N++I+ Y+  +    AL L+ +M+      D FT   +L
Sbjct: 87  VKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVL 146

Query: 198 SSCAHVGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGN---------LDSAFCV 247
           S+ + +         LH    ++G +    V NAL+  Y  C +         + SA  V
Sbjct: 147 SALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKV 206

Query: 248 FSRMRKRDVL--SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
           F    K  +   SW +MI GY    R D+ ++  +++L    +P  + +  ++ G   +G
Sbjct: 207 FDETPKNQIYEPSWTTMIAGY---VRNDDLVA-ARELLDGLTYPIDVAWNAMISGYVRRG 262

Query: 306 LVEEGVEYFHMMVS 319
           L EE  + F  M S
Sbjct: 263 LYEEAFDTFRRMHS 276


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 202/585 (34%), Positives = 292/585 (49%), Gaps = 77/585 (13%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM--------------------- 79
           A++LF QI  P   +WN+LI  + Q+    +A   ++ M                     
Sbjct: 341 ARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRS 400

Query: 80  -----LMASLSR----PDTFTFTFTLKACERVKALNKCQELHGFVIRSG----------- 119
                L+  L R    P   + T    AC  + AL    ++H   ++ G           
Sbjct: 401 EEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNAL 460

Query: 120 ---YERC-----------------VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
              Y +C                 +V   + +     N +++ AR+ FDNM  RD VSW 
Sbjct: 461 ITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWT 520

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           +IIS Y  A    EA+  ++ M  E    +   L  LL  C  +GA  +G  +H +A ++
Sbjct: 521 TIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKL 580

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G    + V NAL+ MY KCG  DS   +F  M +RD+ +WN++I GY  HG G EAI  +
Sbjct: 581 GMDSELIVANALISMYFKCGCADSRR-IFDLMEERDIFTWNTIITGYAQHGLGREAIKMY 639

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           + M  AG  P+ +TF+GLL  CSH GLV+EG ++F  M   Y L P  +HY C+VDL GR
Sbjct: 640 QHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGR 699

Query: 340 AGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
            G ++ A + I +     D V+W  LLG+CKIH+N EIG+ A + L ++E ++AG+YV+L
Sbjct: 700 TGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVML 759

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + IY+       VA  RK++K  G+   PG SW +I +++H FV  DK H   + I   L
Sbjct: 760 SNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATL 819

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           EE+    K  GY  D   V       E+  E S  YHSEKLA+A+ L  TP G  ++I+K
Sbjct: 820 EELYTLLKATGYVPDTEFVL--HDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILK 877

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S    R + +RD  R+HHFR+G CSC D+W
Sbjct: 878 NLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 162/367 (44%), Gaps = 46/367 (12%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM----------LMASL 84
           +  ++ A+ LF+ + +    +WNS++  +  SL  + A   +  M          +++  
Sbjct: 140 NGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGY 199

Query: 85  SR--------------------PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCV 124
            R                    PD   F   L A + +  L+  + L    +++G+ER V
Sbjct: 200 GRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDV 259

Query: 125 VVSTNLMRGYAAN-GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V+ T ++  Y+ +  V++ A   F++M ER+  +W+++I+  +       A+ +YER   
Sbjct: 260 VIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPV 319

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG-NALVDMYAKCGNLD 242
           + +      L+  L+ C  +   +  I   +I       E + V  NAL+  Y + G ++
Sbjct: 320 KSIACRT-ALITGLAQCGRID--DARILFEQIP------EPIVVSWNALITGYMQNGMVN 370

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A  +F +M  R+ +SW  MI GY  +GR +EA+   +++  +G  P   +   +   CS
Sbjct: 371 EAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACS 430

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGC--LVDLYGRAGKLEKALEVINTSSPSDPVL 360
           +   +E G +   + V    +      + C  L+ +YG+   +E A +V +     D V 
Sbjct: 431 NIVALETGTQVHSLAV---KVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVS 487

Query: 361 WRTLLGS 367
           W + L +
Sbjct: 488 WNSFLAA 494



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 153/370 (41%), Gaps = 73/370 (19%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +      AWNS+I A+  +  P  A   Y+     ++S  +  T    L    
Sbjct: 53  AREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYD-----AISGGNMRTGAILLSGYG 107

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R+  + + +     V     ER  V    ++  Y  NG I  AR +FD MP RD+ SWNS
Sbjct: 108 RLGRVLEARR----VFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNS 163

Query: 161 IISCYTQASFHLEALKLYERM----------------RFEDVG---------------LD 189
           +++ Y  +   ++A  L+E+M                R E+ G                D
Sbjct: 164 MLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPD 223

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK-CGNLDSAFCVF 248
                  LS+   +G L++   L  +A + GF   V +G A++++Y++    LD+A   F
Sbjct: 224 QSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFF 283

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ----------MLMAGF----------- 287
             M +R+  +W++MI      GR D AI+ +++           L+ G            
Sbjct: 284 ESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARI 343

Query: 288 ------HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
                  P  +++  L+ G    G+V E  E F  M  R  +      +  ++  Y + G
Sbjct: 344 LFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTIS-----WAGMIAGYAQNG 398

Query: 342 KLEKALEVIN 351
           + E+AL ++ 
Sbjct: 399 RSEEALGLLQ 408



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 10/146 (6%)

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G +  AR VFD MP RD+++WNS+IS Y        A  LY+ +     G +  T   LL
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS----GGNMRTGAILL 103

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVG-NALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           S     G   +G  L       G +E   V  NA++  Y + G++  A  +F  M  RDV
Sbjct: 104 S-----GYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQM 282
            SWNSM+ GY    +  +A + F++M
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKM 184



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 95/239 (39%), Gaps = 41/239 (17%)

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           L+ GY   G +  AR VFD M ER+ V+WN++ISCY Q      A +L++ M   DV   
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVS-- 159

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
                                                  N+++  Y     +  A  +F 
Sbjct: 160 -------------------------------------SWNSMLTGYCHSLQMVDARNLFE 182

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
           +M +R+++SW  MI GYG      +A   F +M   G  PD   F   L      G ++ 
Sbjct: 183 KMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDV 242

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGR-AGKLEKALEVINTSSPSDPVLWRTLLGS 367
            +E   ++  +   +  +     ++++Y R    L+ A++   +    +   W T++ +
Sbjct: 243 -LESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAA 300



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 10/134 (7%)

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
            + G +  A  VF  M +RD+++WNSMI  Y  +G  D A   +  +        +I   
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI--- 101

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
            LL G    G V E    F  M+ R  +      +  ++  Y + G +  A  + +    
Sbjct: 102 -LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGDITMARRLFDAMPS 155

Query: 356 SDPVLWRTLL-GSC 368
            D   W ++L G C
Sbjct: 156 RDVSSWNSMLTGYC 169


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 194/550 (35%), Positives = 307/550 (55%), Gaps = 21/550 (3%)

Query: 19  HEIHGEWLLNSYAISVSS---SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFY 75
           H    + L+N+  I+  +   SL +A+ +F  +      +WN++I   AQ+  P++A+ +
Sbjct: 445 HSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDF 504

Query: 76  YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
           Y  M    +  PD F+    L AC R+  L   +E+HGFV+R+G E    V+ +L+  Y 
Sbjct: 505 YFEMTRLGI-LPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYF 563

Query: 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
                   R+ F+ M +++ V WN+++S Y+Q     EAL L+ +M  + +  D   +  
Sbjct: 564 HCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIAS 623

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L +C+ + AL +G  +H  A +   +E  +V  +L+DMYAK G L  +  +F+R+  ++
Sbjct: 624 ILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKE 683

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           V SWN MI G+GVHG+G++A+  F+ M  +   PD  TFLG+L  C H GLV EG+ Y  
Sbjct: 684 VASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLA 743

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRN 373
            M + Y L+P ++HY C++D+ GRAG+L +AL  IN   P +P   +W +LL S   + +
Sbjct: 744 QMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFIN-EMPEEPDAKIWSSLLSSSITYVD 802

Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIE 433
           +E+GE   + L+ LEA  A  Y+LL+ +YA     + V   R+ +K   ++   G SWIE
Sbjct: 803 LEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIE 862

Query: 434 IGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA 493
           +  +V+ F+  + S+P +D I +    +  +   IGYT D S V       E    K   
Sbjct: 863 LRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEK--RKILK 920

Query: 494 YHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFR 541
            HSEK+AI FG   T +GT+LRI KNLR            S A  R++++RD  R+HHF+
Sbjct: 921 GHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFK 980

Query: 542 DGLCSCGDYW 551
            G+CSCGDYW
Sbjct: 981 KGICSCGDYW 990



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 167/315 (53%), Gaps = 14/315 (4%)

Query: 1   MGLKKHARYVGLNKARQAHEI-------HGEWLLNSYAISVSSSLSY---AQLLFNQIQN 50
           M L+K  +Y  +   R+  E+        G+++LN+  I++ S   Y   ++L+F+++ N
Sbjct: 112 MLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLN 171

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQE 110
                WN+L+  + ++    +AI  +  ++  +  +PD FTF   +KAC     ++  + 
Sbjct: 172 KNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKS 231

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
           +HG  ++ G    + V   ++  Y   G ++ A  +FD MPE++L+SWNS+I  +++  F
Sbjct: 232 VHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGF 291

Query: 171 HLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
            LEA + +  +     GL  D  T+V LL  C+  G +++G+ +H +A ++G V  + V 
Sbjct: 292 WLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVC 351

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-- 286
           NAL+DMY+KCG L  A  +F ++  + V+SWNSMI  Y   G   E     ++M M    
Sbjct: 352 NALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEEL 411

Query: 287 FHPDSITFLGLLCGC 301
              + +T L LL  C
Sbjct: 412 MEVNEVTILNLLPAC 426



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 164/319 (51%), Gaps = 6/319 (1%)

Query: 96  LKACERVKALNKCQELHGFV-IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           L+ C + K +   ++L   + + S +    V++T L+  Y+  G    +R VFD +  ++
Sbjct: 114 LQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKN 173

Query: 155 LVSWNSIISCYTQASFHLEALKLY-ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           L  WN+++S Y +   + EA+  + E +   +   D FT  CL+ +C     +++G  +H
Sbjct: 174 LFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVH 233

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            +A +MG +  ++VGNA++ +Y KCG LD A  +F +M +++++SWNS+I G+  +G   
Sbjct: 234 GMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWL 293

Query: 274 EAISFFKQMLMA--GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           EA   F+ +L +  G  PD  T + LL  CS +G V+ G+   H M  +  L   +    
Sbjct: 294 EAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCN 352

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNV-EIGEIAMKNLVQLEAA 390
            L+D+Y + G L +A  +         V W +++G+      V E  ++  K  ++ E  
Sbjct: 353 ALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELM 412

Query: 391 SAGDYVLLATIYACTKDEE 409
              +  +L  + AC ++ E
Sbjct: 413 EVNEVTILNLLPACLEESE 431



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 150/335 (44%), Gaps = 2/335 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS-LSRPDTFTFTFTL 96
           LS A +LF +I+N    +WNS+I A+++     +       M M   L   +  T    L
Sbjct: 364 LSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLL 423

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC     L   + LHG+ +R  ++   +++   +  YA  G +  A  VF  M  + + 
Sbjct: 424 PACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVS 483

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I  + Q    ++AL  Y  M    +  D F++V LL +C  +G L  G  +H   
Sbjct: 484 SWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFV 543

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              G   + +V  +L+ +Y  C         F  M  ++ + WN+M+ GY  +   +EA+
Sbjct: 544 LRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEAL 603

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           S F+QML  G  PD I    +L  CS    +  G E  H    + +L         L+D+
Sbjct: 604 SLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKE-VHCFALKNSLMEDNFVACSLMDM 662

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           Y ++G L  +  + N  +  +   W  ++    +H
Sbjct: 663 YAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVH 697


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 185/528 (35%), Positives = 289/528 (54%), Gaps = 31/528 (5%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L +A  +F +++     +W ++I  + Q     +A+  +  M    + + D   F   + 
Sbjct: 489 LDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGI-KSDNIGFASAIS 547

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  ++AL++ +++H     SGY   + +   L+  YA  G +  A + FD +  +D VS
Sbjct: 548 ACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVS 607

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNS++S + Q+ +  EAL ++ +M    + ++ FT    +S+ A++  + +G  +H +  
Sbjct: 608 WNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIR 667

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G+     V NAL+ +YAKCG +D              +SWNSMI GY  HG G EA+ 
Sbjct: 668 KTGYDSETEVSNALITLYAKCGTIDD-------------ISWNSMITGYSQHGCGFEALK 714

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F+ M      P+ +TF+G+L  CSH GLV+EG+ YF  M   +NL P  +HY C+VDL 
Sbjct: 715 LFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLL 774

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GR+G L +A   +       D ++WRTLL +C +H+N++IGE A  +L++LE   +  YV
Sbjct: 775 GRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYV 834

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           L++ +YA +   +   RTR+++K  G+K  PG SW+E+ N VH F   D++HP ADMIY 
Sbjct: 835 LVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYE 894

Query: 457 KLEEIMHRAKFIGYT-KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
            L  +  RA   GY  +  SL++ +    +D  E     HSE+LAIAFGL +    T L 
Sbjct: 895 YLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTE---IIHSERLAIAFGLLSLTSSTPLY 951

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + KNLR            S    R +IVRD  R+HHF+ G CSC DYW
Sbjct: 952 VFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 143/258 (55%), Gaps = 1/258 (0%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P+ FT+   LK C  + A +  +++H  V+++G++  V VS+ L+  YA +G ++ A  +
Sbjct: 436 PNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKI 495

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           F  + E D+VSW ++I+ YTQ     EAL L++ M+ + +  D       +S+CA + AL
Sbjct: 496 FRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQAL 555

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
           + G  +H  +C  G+ + + +GNALV +YA+CG +  A+  F ++  +D +SWNS++ G+
Sbjct: 556 DQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGF 615

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
              G  +EA++ F QM  AG   +S TF   +   ++   V  G +  H M+ +      
Sbjct: 616 AQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQ-IHGMIRKTGYDSE 674

Query: 327 IKHYGCLVDLYGRAGKLE 344
            +    L+ LY + G ++
Sbjct: 675 TEVSNALITLYAKCGTID 692



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 159/333 (47%), Gaps = 17/333 (5%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S S +LS A+ +F+ +      ++NSLI   AQ     +A+  +  M +    +PD  T 
Sbjct: 297 SRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNL-DCQKPDCVTV 355

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              L AC  V AL   ++ H + I++G    +VV  +L+  Y     I+ A   F     
Sbjct: 356 ASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF----- 410

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
                      CY Q     ++ +++ +M+ E +  + FT   +L +C  +GA ++G  +
Sbjct: 411 ----------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQI 460

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H    + GF  +VYV + L+DMYAK G LD A  +F R+++ DV+SW +MI GY  H + 
Sbjct: 461 HTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKF 520

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EA++ FK+M   G   D+I F   +  C+    +++G +  H           +     
Sbjct: 521 TEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQ-IHAQSCLSGYSDDLSIGNA 579

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           LV LY R GK+ +A    +     D V W +L+
Sbjct: 580 LVSLYARCGKVREAYAAFDQIYAKDNVSWNSLV 612



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 155/334 (46%), Gaps = 31/334 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           LS A+ +F  ++   + +W ++I   +Q+    +A+  +  ++               L 
Sbjct: 215 LSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIV---------------LS 259

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC +V+     ++LHG V++ G+     V   L+  Y+ +G + +A  +F  M +RD VS
Sbjct: 260 ACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVS 319

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           +NS+IS   Q  +   AL L+++M  +    D  T+  LLS+CA VGAL  G   H  A 
Sbjct: 320 YNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAI 379

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G    + V  +L+D+Y KC ++ +A               +   + YG     +++  
Sbjct: 380 KAGMTSDIVVEGSLLDLYVKCSDIKTA---------------HEFFLCYGQLDNLNKSFQ 424

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM + G  P+  T+  +L  C+  G  + G E  H  V +   +  +     L+D+Y
Sbjct: 425 IFTQMQIEGIVPNQFTYPSILKTCTTLGATDLG-EQIHTQVLKTGFQFNVYVSSVLIDMY 483

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            + GKL+ AL++      +D V W  ++     H
Sbjct: 484 AKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQH 517



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 124/291 (42%), Gaps = 35/291 (12%)

Query: 76  YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
           Y H++     R ++ TF + L+ C     LN          RS Y+        L+  Y 
Sbjct: 68  YLHLMEQHGVRANSQTFLWLLEGC-----LNS---------RSFYD-----GLKLIDFYL 108

Query: 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
           A G +  A +VFD MP R L  WN I + +           L+ RM  ++V  D      
Sbjct: 109 AFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAV 168

Query: 196 LLSSCA-HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
           +L  C+ +  +      +H      GF  S ++ N L+D+Y K G L SA  VF  ++ R
Sbjct: 169 VLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKAR 228

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           D +SW +MI G   +G  +EA+  F Q++++               C+     E G +  
Sbjct: 229 DSVSWVAMISGLSQNGYEEEAMLLFCQIVLS--------------ACTKVEFFEFGKQ-L 273

Query: 315 HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           H +V +            LV LY R+G L  A ++ +  S  D V + +L+
Sbjct: 274 HGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLI 324


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 190/546 (34%), Positives = 296/546 (54%), Gaps = 25/546 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA      L YA  +F+ +       W++LI  F       +A   +  ML+ 
Sbjct: 243 GTALLDMYA--KCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVE 300

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            L      +    L+ C  +  L+   +LH  + +SG    +  S +L+  YA  G+I  
Sbjct: 301 GLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINE 360

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A   FD +  +D +S+ +++S   Q     EA  ++++M+  ++  D  T+V L+ +C+H
Sbjct: 361 ATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSH 420

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL  G   H      G      + N+L+DMYAKCG +D +  VF +M  RDV+SWN+M
Sbjct: 421 LAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTM 480

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I GYG+HG G EA + F  M   GF PD +TF+ L+  CSH GLV EG  +F  M  +Y 
Sbjct: 481 IAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYG 540

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           + P ++HY C+VDL  R G L++A + I +    +D  +W  LLG+C+IH+N+++G+   
Sbjct: 541 ILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVS 600

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           + + +L     G++VLL+ I++     +  A  R + K  G K +PG+SWIEI   +H F
Sbjct: 601 RIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAF 660

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA----YHSE 497
           V  D+SHP +  IY +L+ IM   K +GY  D S V       +D  E+       YHSE
Sbjct: 661 VGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVL------QDLEEEEKEKALLYHSE 714

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLAIAFG+ +  +  ++ + KNLR            ++  +R +IVRD  R+HHF++G C
Sbjct: 715 KLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQC 774

Query: 546 SCGDYW 551
           SCG++W
Sbjct: 775 SCGNFW 780



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 167/337 (49%), Gaps = 9/337 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQA-IFYYNHMLMASLSRPDTFTFTFTL 96
           L+ A+ +F++I  P  +A+N+LIRA++  L P  A I  Y  ML   ++ P+ +TF F L
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSW-LGPFHAAIDLYRSMLRFRVA-PNKYTFPFVL 107

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           KAC  +  L   + +H     +G    + VST L+  Y        AR+VF  MP RD+V
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 157 SWNSIISCY-TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           +WN++++ Y     +H     L +      +  +  TLV LL   A  GAL  G  +H  
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAY 227

Query: 216 ---ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
              AC     E V +G AL+DMYAKC  L  A  VF  M  R+ ++W+++I G+ +  R 
Sbjct: 228 CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRM 287

Query: 273 DEAISFFKQMLMAGFHPDSITFLG-LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
            EA + FK ML+ G    S T +   L  C+    +  G +  H ++++  +   +    
Sbjct: 288 TEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASN 346

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
            L+ +Y +AG + +A    +  +  D + +  LL  C
Sbjct: 347 SLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGC 383



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 5/240 (2%)

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190
           +  + + G +  AR VFD +P  D  ++N++I  Y+       A+ LY  M    V  + 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
           +T   +L +C+ +  L  G  +H  A   G    ++V  AL+D+Y +C     A  VF++
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEE 309
           M  RDV++WN+M+ GY  HG    AI+    M    G  P++ T + LL   +  G + +
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 310 GVEYFHMMVSRYNLKPGIKHY---GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           G    H    R  L+   +       L+D+Y +  +L  A  V +     + V W  L+G
Sbjct: 221 GTS-IHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIG 279


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 187/529 (35%), Positives = 290/529 (54%), Gaps = 24/529 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F+ +       W +++ A A +    Q    +   +      P+ +TF+  L 
Sbjct: 120 LDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLG 179

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC     L     +H   +++G +  V V ++L+  Y   G ++  R VFD M  RDLV 
Sbjct: 180 ACTTPGMLTA---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVV 236

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNSII+ + Q+   + A++L+ RM+      +  TL  +L +C  +  L  G  +H  A 
Sbjct: 237 WNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVH--AH 294

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            + +   + + NAL+DMY KCG+L+ A  +F RM +RDV+SW++M+ G   +G+  EA+ 
Sbjct: 295 VLKYDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALR 354

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F  M   G  P+ +T +G+L  CSH GLVE+G  YF  M   + ++P  +H+ C+VDL 
Sbjct: 355 VFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLL 414

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAGKL++A+E I+  S   D V+WRTLLG+C++H+N  +   A + +++LE    G  V
Sbjct: 415 GRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARV 474

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+  YA  +      +  K ++  G++  PG SWIE+  +VH F+  D SHP +D I +
Sbjct: 475 LLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQ 534

Query: 457 KLEEIMHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           +L  ++ R K +GY      V   +     ED L+    YHSEK+AI FG     DG  +
Sbjct: 535 ELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLK----YHSEKMAIVFGTMHAVDGKPI 590

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI+KNLR            S +  R +++RD VR+HHF+DG CSCGDYW
Sbjct: 591 RIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 161/328 (49%), Gaps = 17/328 (5%)

Query: 86  RPDTFTFTFTLKACER------VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           R D  + T  +K C R       + +++  E HG +   G    + VS +L   YA  G+
Sbjct: 61  RADPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAG-GLFVSNSLASMYAKFGL 119

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFH-LEALKLYERMRFEDVGLDGFTLVCLLS 198
           ++ A  +FD MP R++V+W ++++    A     EAL+    MR + V  + +T   +L 
Sbjct: 120 LDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLG 179

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           +C   G L     +H    + G    V+V ++L+D Y K G+LD    VF  M  RD++ 
Sbjct: 180 ACTTPGMLTA---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVV 236

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WNS+I G+   G G  AI  F +M  AGF  +  T   +L  C+   ++E G +  H  V
Sbjct: 237 WNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQ-VHAHV 295

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVEIG 377
            +Y+    +  +  L+D+Y + G LE A  + +     D + W T++ G  +  ++VE  
Sbjct: 296 LKYDRD--LILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVE-- 351

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACT 405
            + + +L++ +  +     ++  ++AC+
Sbjct: 352 ALRVFDLMKSQGVAPNHVTMVGVLFACS 379



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 33/261 (12%)

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE-----SVYVGNALVDMYAKCGNLDS 243
           D  +L  L+  C   G  + G  +HR     G +       ++V N+L  MYAK G LD 
Sbjct: 63  DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDD 122

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYG-VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
           A  +F  M  R+V++W +++       GR  EA+ F   M   G  P++ TF  +L  C+
Sbjct: 123 ALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACT 182

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
             G++       H    +  L   +     L+D Y + G L+    V +     D V+W 
Sbjct: 183 TPGMLTA----VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWN 238

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
           +++          +G I +   ++    S+    L + + ACT                 
Sbjct: 239 SIIAGFA-QSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACT----------------- 280

Query: 423 IKTTPGWSWIEIGNQVHKFVV 443
                G   +E G QVH  V+
Sbjct: 281 -----GMVMLEAGRQVHAHVL 296


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 202/585 (34%), Positives = 292/585 (49%), Gaps = 77/585 (13%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM--------------------- 79
           A++LF QI  P   +WN+LI  + Q+    +A   ++ M                     
Sbjct: 341 ARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRS 400

Query: 80  -----LMASLSR----PDTFTFTFTLKACERVKALNKCQELHGFVIRSG----------- 119
                L+  L R    P   + T    AC  + AL    ++H   ++ G           
Sbjct: 401 EEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNAL 460

Query: 120 ---YERC-----------------VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
              Y +C                 +V   + +     N +++ AR+ FDNM  RD VSW 
Sbjct: 461 ITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWT 520

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           +IIS Y  A    EA+  ++ M  E    +   L  LL  C  +GA  +G  +H +A ++
Sbjct: 521 TIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKL 580

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           G    + V NAL+ MY KCG  DS   +F  M +RD+ +WN++I GY  HG G EAI  +
Sbjct: 581 GMDSELIVANALISMYFKCGCADSRR-IFDLMEERDIFTWNTIITGYAQHGLGREAIKMY 639

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           + M  AG  P+ +TF+GLL  CSH GLV+EG ++F  M   Y L P  +HY C+VDL GR
Sbjct: 640 QHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGR 699

Query: 340 AGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
            G ++ A + I +     D V+W  LLG+CKIH+N EIG+ A + L ++E ++AG+YV+L
Sbjct: 700 TGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVML 759

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           + IY+       VA  RK++K  G+   PG SW +I +++H FV  DK H   + I   L
Sbjct: 760 SNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATL 819

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           EE+    K  GY  D   V       E+  E S  YHSEKLA+A+ L  TP G  ++I+K
Sbjct: 820 EELYTLLKATGYVPDTEFVL--HDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILK 877

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S    R + +RD  R+HHFR+G CSC D+W
Sbjct: 878 NLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 162/367 (44%), Gaps = 46/367 (12%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM----------LMASL 84
           +  ++ A+ LF+ + +    +WNS++  +  SL  + A   +  M          +++  
Sbjct: 140 NGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGY 199

Query: 85  SR--------------------PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCV 124
            R                    PD   F   L A + +  L+  + L    +++G+ER V
Sbjct: 200 GRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDV 259

Query: 125 VVSTNLMRGYAAN-GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           V+ T ++  Y+ +  V++ A   F++M ER+  +W+++I+  +       A+ +YER   
Sbjct: 260 VIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPV 319

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG-NALVDMYAKCGNLD 242
           + +      L+  L+ C  +   +  I   +I       E + V  NAL+  Y + G ++
Sbjct: 320 KSIACRT-ALITGLAQCGRID--DARILFEQIP------EPIVVSWNALITGYMQNGMVN 370

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A  +F +M  R+ +SW  MI GY  +GR +EA+   +++  +G  P   +   +   CS
Sbjct: 371 EAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACS 430

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGC--LVDLYGRAGKLEKALEVINTSSPSDPVL 360
           +   +E G +   + V    +      + C  L+ +YG+   +E A +V +     D V 
Sbjct: 431 NIVALETGTQVHSLAV---KVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVS 487

Query: 361 WRTLLGS 367
           W + L +
Sbjct: 488 WNSFLAA 494



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 153/370 (41%), Gaps = 73/370 (19%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +      AWNS+I A+  +  P  A   Y+     ++S  +  T    L    
Sbjct: 53  AREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYD-----AISGGNMRTGAILLSGYG 107

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R+  + + +     V     ER  V    ++  Y  NG I  AR +FD MP RD+ SWNS
Sbjct: 108 RLGRVLEARR----VFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNS 163

Query: 161 IISCYTQASFHLEALKLYERM----------------RFEDVG---------------LD 189
           +++ Y  +   ++A  L+E+M                R E+ G                D
Sbjct: 164 MLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPD 223

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK-CGNLDSAFCVF 248
                  LS+   +G L++   L  +A + GF   V +G A++++Y++    LD+A   F
Sbjct: 224 QSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFF 283

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ----------MLMAGF----------- 287
             M +R+  +W++MI      GR D AI+ +++           L+ G            
Sbjct: 284 ESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARI 343

Query: 288 ------HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
                  P  +++  L+ G    G+V E  E F  M  R  +      +  ++  Y + G
Sbjct: 344 LFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTIS-----WAGMIAGYAQNG 398

Query: 342 KLEKALEVIN 351
           + E+AL ++ 
Sbjct: 399 RSEEALGLLQ 408



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 10/146 (6%)

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G +  AR VFD MP RD+++WNS+IS Y        A  LY+ +     G +  T   LL
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS----GGNMRTGAILL 103

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVG-NALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           S     G   +G  L       G +E   V  NA++  Y + G++  A  +F  M  RDV
Sbjct: 104 S-----GYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQM 282
            SWNSM+ GY    +  +A + F++M
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKM 184



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 95/239 (39%), Gaps = 41/239 (17%)

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           L+ GY   G +  AR VFD M ER+ V+WN++ISCY Q      A +L++ M   DV   
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVS-- 159

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
                                                  N+++  Y     +  A  +F 
Sbjct: 160 -------------------------------------SWNSMLTGYCHSLQMVDARNLFE 182

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
           +M +R+++SW  MI GYG      +A   F +M   G  PD   F   L      G ++ 
Sbjct: 183 KMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDV 242

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGR-AGKLEKALEVINTSSPSDPVLWRTLLGS 367
            +E   ++  +   +  +     ++++Y R    L+ A++   +    +   W T++ +
Sbjct: 243 -LESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAA 300



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 10/134 (7%)

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
            + G +  A  VF  M +RD+++WNSMI  Y  +G  D A   +  +        +I   
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI--- 101

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
            LL G    G V E    F  M+ R  +      +  ++  Y + G +  A  + +    
Sbjct: 102 -LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGDITMARRLFDAMPS 155

Query: 356 SDPVLWRTLL-GSC 368
            D   W ++L G C
Sbjct: 156 RDVSSWNSMLTGYC 169


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 186/521 (35%), Positives = 299/521 (57%), Gaps = 18/521 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           + YA+ +F+++  P+   WN+L + + ++  P +++  Y  M    + RPD FT+ F +K
Sbjct: 59  MCYARQVFDEMPKPRIFLWNTLFKGYVRNQLPFESVLLYKKMRDLGV-RPDEFTYPFVVK 117

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A  ++  L     LH  V+++G+E   +V+T L+  Y   G + +A  +F++M  +DLV+
Sbjct: 118 AISQLGVLPCGVSLHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVA 177

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN+ I+   Q      AL+ + +M  + V  D FT+V +LS+C  +G+L++G  ++  A 
Sbjct: 178 WNAFIAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRAR 237

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +     ++ V NA +DM+ KCG+ ++A  +F  M++R+V+SW++MIVGY ++G   EA++
Sbjct: 238 KEEIECNIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALA 297

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV--SRYNLKPGIKHYGCLVD 335
            F  M   G  P+ +TFLG+L  CSH GLV EG  YF +MV  +  NL+P  +HY C+VD
Sbjct: 298 LFTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVD 357

Query: 336 LYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           L GR+G LE+A E I       D  +W  LLG+C +HR++ +G+     LV+        
Sbjct: 358 LLGRSGLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSY 417

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           +VLL+ IYA     + V + R  ++  G K    +S +E   ++H F   D SHP +  I
Sbjct: 418 HVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDGKIHFFNRGDISHPQSKAI 477

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y KL+EI+ + + +GY  D   V       E   E S ++HSEKLAIAFGL     G  +
Sbjct: 478 YEKLDEILKKIRNMGYVPDTGSVFHDVEMEEK--ESSLSHHSEKLAIAFGLINGRAGHPI 535

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDG 543
           R++KNLR            S   SR++I+RD+ R+HHFR+G
Sbjct: 536 RVMKNLRTCDDCHVFSKFVSRLTSREIIMRDKNRFHHFRNG 576



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 139/300 (46%), Gaps = 4/300 (1%)

Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
           + +++H  VIR+G+     + T L+      G +  AR VFD MP+  +  WN++   Y 
Sbjct: 26  QLKKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYV 85

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
           +     E++ LY++MR   V  D FT   ++ + + +G L  G+ LH    + GF     
Sbjct: 86  RNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGI 145

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           V   LV MY K G L SA  +F  M+ +D+++WN+ I      G    A+ +F +M    
Sbjct: 146 VATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADA 205

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
              DS T + +L  C   G ++ G E +     +  ++  I      +D++ + G  E A
Sbjct: 206 VQFDSFTVVSMLSACGQLGSLDIGEEIYD-RARKEEIECNIIVENARLDMHLKCGSTEAA 264

Query: 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE-IAMKNLVQLEAASAGDYVLLATIYACT 405
             + +     + V W T++    +  N + GE +A+  ++Q E         L  + AC+
Sbjct: 265 RVLFDDMKQRNVVSWSTMIVGYAM--NGDSGEALALFTMMQNEGLRPNYVTFLGVLSACS 322


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 204/595 (34%), Positives = 307/595 (51%), Gaps = 63/595 (10%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           G   HAR + +  +     + G  L++ YA      L  A+ +F  ++     +WNSLI 
Sbjct: 297 GAHLHARILRMEHSLDL--VFGNGLIDMYA--KCGCLDLAKRVFKSLREHDHISWNSLIT 352

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG-- 119
                     A+  +N M  +S+   D F     L  C      +  + LHG+ I+SG  
Sbjct: 353 GVVHFGLGEDALILFNQMRRSSVVL-DEFILPTILGVCSGPDYASTGELLHGYTIKSGMG 411

Query: 120 ------------YERC-----------------VVVSTNLMRGYAANGVIEAARSVFDNM 150
                       Y +C                  +  T ++  ++ +G I  AR  FD M
Sbjct: 412 SSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMM 471

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           PER++V+WNS++S Y Q  F  E LKLY  MR   V  D  T    + +CA +  + +G+
Sbjct: 472 PERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGM 531

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +   A + G   +V V N++V MY++CG +  A   F  +  +D++SWN+M+  +  +G
Sbjct: 532 QVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNG 591

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
            G + I  F+ ML     P+ I+++ +L GCSH GLV EG  YF  M   + + P  +H+
Sbjct: 592 LGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHF 651

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
            C+VDL GRAG LE+A ++I    P  P   +W  LLGSC++H ++ + E A K L++L+
Sbjct: 652 SCMVDLLGRAGLLEQAKDLIE-GMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELD 710

Query: 389 AASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSH 448
              +  YVLL+ +Y+ + + + VA  RKL+K  GI+T+ G SWIE+ N+VH F VD+ SH
Sbjct: 711 VEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSH 770

Query: 449 PDADMIYRKLEEIMHRAKFIG-YTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLAT 507
           P    +Y KLEE+M   +  G Y   ES V            +S  YHSEKLA AFGL  
Sbjct: 771 PQIKEVYLKLEEMMKMIEDTGKYITVESSV-----------HRSKKYHSEKLAFAFGLLN 819

Query: 508 TPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
            P    + ++KNLR            S+  SR+LI+RD  R+HHF+DG+CSC DY
Sbjct: 820 LPSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 160/355 (45%), Gaps = 33/355 (9%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +FN++      +WN+LI  F+Q    +Q +  +  M     S P+  T+   L AC    
Sbjct: 234 IFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFS-PNFMTYGSVLSACASTS 292

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L     LH  ++R  +   +V    L+  YA  G ++ A+ VF ++ E D +SWNS+I+
Sbjct: 293 DLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLIT 352

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
                    +AL L+ +MR   V LD F L  +L  C+     + G  LH    + G   
Sbjct: 353 GVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGS 412

Query: 224 SVYVGNALVDMYAKCGNLDSAFCV------------------FSR-------------MR 252
           S  VGNA++ MYAKCG+ D A  V                  FSR             M 
Sbjct: 413 SAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMP 472

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           +R++++WNSM+  Y  +G  +E +  +  M   G  PD ITF   +  C+   +V+ G++
Sbjct: 473 ERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQ 532

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
                 +++ L   +     +V +Y R G +++A    ++    D + W  +L +
Sbjct: 533 VV-THATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAA 586



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 205/480 (42%), Gaps = 65/480 (13%)

Query: 31  AISVSSSLSYAQLLFNQ--IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS--- 85
           A+  SS +S A+ LF++  ++   + +W ++I  ++Q+    ++   ++ M+  +     
Sbjct: 83  ALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGK 142

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
             D F+FT  +KAC  +       +LH  V + G+     +  +++  Y   G ++ A +
Sbjct: 143 NYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAET 202

Query: 146 V-------------------------------FDNMPERDLVSWNSIISCYTQASFHLEA 174
           V                               F+ MPERD VSWN++IS ++Q  F ++ 
Sbjct: 203 VFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQC 262

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L ++  M  +    +  T   +LS+CA    L  G  LH     M     +  GN L+DM
Sbjct: 263 LAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDM 322

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAKCG LD A  VF  +R+ D +SWNS+I G    G G++A+  F QM  +    D    
Sbjct: 323 YAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFIL 382

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
             +L  CS       G E  H    +  +         ++ +Y + G  +KA  V     
Sbjct: 383 PTILGVCSGPDYASTG-ELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMP 441

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGE-------IAMKNLVQLEAASAGDYVLLATIYACTKD 407
             + + W  ++ +    R+ +IG+       +  +N+V   +       +L+T       
Sbjct: 442 LRNTISWTAMITA--FSRSGDIGKARGYFDMMPERNIVTWNS-------MLSTYVQNGFS 492

Query: 408 EEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF 467
           EEG+ +    ++SNG++  P W           F    ++  D  ++   ++ + H  KF
Sbjct: 493 EEGL-KLYVSMRSNGVQ--PDWI---------TFTTSIRACADLAIVKLGMQVVTHATKF 540



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 171/379 (45%), Gaps = 42/379 (11%)

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER--DLVSWNSIISCYTQASFHL 172
           V +  + R +     ++R   ++  +  A  +FD MP R  D VSW ++IS Y+Q  FH 
Sbjct: 65  VFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHS 124

Query: 173 EALKLYERM-RFEDVG---LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
            + + +  M R  + G    D F+   ++ +C  +G   + I LH +  ++GF     + 
Sbjct: 125 RSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQ 184

Query: 229 NALVDMYAKCGNLD------------SAFC-------------------VFSRMRKRDVL 257
           N++V MY KCG++D            S FC                   +F+RM +RD +
Sbjct: 185 NSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEV 244

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           SWN++I  +  HG G + ++ F +M   GF P+ +T+  +L  C+    ++ G  + H  
Sbjct: 245 SWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGA-HLHAR 303

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIG 377
           + R      +     L+D+Y + G L+ A  V  +    D + W +L+    +H  +   
Sbjct: 304 ILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGV-VHFGLGED 362

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
            + + N ++  +    +++L   +  C+  +   A T +L+    IK+  G S   +GN 
Sbjct: 363 ALILFNQMRRSSVVLDEFILPTILGVCSGPD--YASTGELLHGYTIKSGMG-SSAPVGNA 419

Query: 438 VHKFVVDDKSHPDADMIYR 456
           +            AD+++R
Sbjct: 420 IITMYAKCGDTDKADLVFR 438



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY+ CG    AF VF     R++ +WN+MI       R  +A   F +M +     DS++
Sbjct: 52  MYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRV--KDSVS 109

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
           +  ++ G S  G      E F +M+   N   G K+Y
Sbjct: 110 WTTMISGYSQNGFHSRSFETFSLMIRDTN--DGGKNY 144


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 194/550 (35%), Positives = 307/550 (55%), Gaps = 21/550 (3%)

Query: 19  HEIHGEWLLNSYAISVSS---SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFY 75
           H    + L+N+  I+  +   SL +A+ +F  +      +WN++I   AQ+  P++A+ +
Sbjct: 445 HSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDF 504

Query: 76  YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
           Y  M    +  PD F+    L AC R+  L   +E+HGFV+R+G E    V+ +L+  Y 
Sbjct: 505 YFEMTRLGI-LPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYF 563

Query: 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
                   R+ F+ M +++ V WN+++S Y+Q     EAL L+ +M  + +  D   +  
Sbjct: 564 HCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIAS 623

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L +C+ + AL +G  +H  A +   +E  +V  +L+DMYAK G L  +  +F+R+  ++
Sbjct: 624 ILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKE 683

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           V SWN MI G+GVHG+G++A+  F+ M  +   PD  TFLG+L  C H GLV EG+ Y  
Sbjct: 684 VASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLA 743

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRN 373
            M + Y L+P ++HY C++D+ GRAG+L +AL  IN   P +P   +W +LL S   + +
Sbjct: 744 QMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFIN-EMPEEPDAKIWSSLLSSSITYVD 802

Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIE 433
           +E+GE   + L+ LEA  A  Y+LL+ +YA     + V   R+ +K   ++   G SWIE
Sbjct: 803 LEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIE 862

Query: 434 IGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA 493
           +  +V+ F+  + S+P +D I +    +  +   IGYT D S V       E    K   
Sbjct: 863 LRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEK--RKILK 920

Query: 494 YHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFR 541
            HSEK+AI FG   T +GT+LRI KNLR            S A  R++++RD  R+HHF+
Sbjct: 921 GHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFK 980

Query: 542 DGLCSCGDYW 551
            G+CSCGDYW
Sbjct: 981 KGICSCGDYW 990



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 167/315 (53%), Gaps = 14/315 (4%)

Query: 1   MGLKKHARYVGLNKARQAHEI-------HGEWLLNSYAISVSSSLSY---AQLLFNQIQN 50
           M L+K  +Y  +   R+  E+        G+++LN+  I++ S   Y   ++L+F+++ N
Sbjct: 112 MLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLN 171

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQE 110
                WN+L+  + ++    +AI  +  ++  +  +PD FTF   +KAC     ++  + 
Sbjct: 172 KNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKS 231

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
           +HG  ++ G    + V   ++  Y   G ++ A  +FD MPE++L+SWNS+I  +++  F
Sbjct: 232 VHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGF 291

Query: 171 HLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
            LEA + +  +     GL  D  T+V LL  C+  G +++G+ +H +A ++G V  + V 
Sbjct: 292 WLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVC 351

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-- 286
           NAL+DMY+KCG L  A  +F ++  + V+SWNSMI  Y   G   E     ++M M    
Sbjct: 352 NALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEEL 411

Query: 287 FHPDSITFLGLLCGC 301
              + +T L LL  C
Sbjct: 412 MEVNEVTILNLLPAC 426



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 151/335 (45%), Gaps = 2/335 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS-LSRPDTFTFTFTL 96
           LS A +LF +I+N    +WNS+I A+++     +       M M   L   +  T    L
Sbjct: 364 LSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLL 423

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC     L   + LHG+ +R  ++   +++   +  YA  G +  A  VF  M  + + 
Sbjct: 424 PACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVS 483

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN++I  + Q    ++AL  Y  M    +  D F++V LL +C  +G L  G  +H   
Sbjct: 484 SWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFV 543

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              G   + +V  +L+ +Y  C         F RM  ++ + WN+M+ GY  +   +EA+
Sbjct: 544 LRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEAL 603

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           S F+QML  G  PD I    +L  CS    +  G E  H    + +L         L+D+
Sbjct: 604 SLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKE-VHCFALKNSLMEDNFVACSLMDM 662

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           Y ++G L  +  + N  +  +   W  ++    +H
Sbjct: 663 YAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVH 697



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 164/319 (51%), Gaps = 6/319 (1%)

Query: 96  LKACERVKALNKCQELHGFV-IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
           L+ C + K +   ++L   + + S +    V++T L+  Y+  G    +R VFD +  ++
Sbjct: 114 LQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKN 173

Query: 155 LVSWNSIISCYTQASFHLEALKLY-ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           L  WN+++S Y +   + EA+  + E +   +   D FT  CL+ +C     +++G  +H
Sbjct: 174 LFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVH 233

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            +A +MG +  ++VGNA++ +Y KCG LD A  +F +M +++++SWNS+I G+  +G   
Sbjct: 234 GMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWL 293

Query: 274 EAISFFKQMLMA--GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
           EA   F+ +L +  G  PD  T + LL  CS +G V+ G+   H M  +  L   +    
Sbjct: 294 EAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCN 352

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNV-EIGEIAMKNLVQLEAA 390
            L+D+Y + G L +A  +         V W +++G+      V E  ++  K  ++ E  
Sbjct: 353 ALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELM 412

Query: 391 SAGDYVLLATIYACTKDEE 409
              +  +L  + AC ++ E
Sbjct: 413 EVNEVTILNLLPACLEESE 431


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 187/515 (36%), Positives = 288/515 (55%), Gaps = 26/515 (5%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +W ++I  +AQ+   L+AI  +  + +  +   D       L+AC  +K+ N  +E+HG+
Sbjct: 417 SWTTIIAGYAQNECHLEAINLFRKVQVKGMD-VDPMMIGSVLRACSGLKSRNFIREIHGY 475

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           V +      +++   ++  Y   G  + AR  F+++  +D+VSW S+I+C       +EA
Sbjct: 476 VFKRDLAD-IMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEA 534

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L+L+  ++  ++  D   ++  LS+ A++ +L  G  +H      GF     + ++LVDM
Sbjct: 535 LELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDM 594

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YA CG ++++  +F  +++RD++ W SMI   G+HG G+EAI+ FK+M      PD ITF
Sbjct: 595 YACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITF 654

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           L LL  CSH GL+ EG  +F +M   Y L+P  +HY C+VDL  R+  LE+A + +  S 
Sbjct: 655 LALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVR-SM 713

Query: 355 PSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           P  P   +W  LLG+C IH N E+GE+A K L+Q +  ++G Y L++ I+A       V 
Sbjct: 714 PIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVE 773

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM----HRAKFI 468
             R  +K NG+K  PG SWIE+ N++H F+  DKSHP  D IY KL +       +  +I
Sbjct: 774 EVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYI 833

Query: 469 GYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------- 521
             TK      V  + SE+   +    HSE+LA+ +GL  TP GTS+RI KNLR       
Sbjct: 834 AQTK-----FVFHNVSEEEKTQMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHT 888

Query: 522 -----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                S    R L+VRD  R+HHF  GLCSCGD+W
Sbjct: 889 FFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 158/303 (52%), Gaps = 7/303 (2%)

Query: 66  SLSP-LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCV 124
           +L+P  Q++   +   +A+ SR +    +  L  C  VKAL + Q+LH  +++S      
Sbjct: 23  TLNPAFQSLTLLSTHPLATPSRLE-HAHSLLLDLCVAVKALPQGQQLHARLLKSHLS--A 79

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
            ++T L+  Y   G ++ A  VFD M ER + +WN+++  +  +  +LEA++LY+ MR  
Sbjct: 80  FLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVL 139

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            V +D  T   +L +C  +G   +G  +H +A + GF E V+V NAL+ MY KCG+L  A
Sbjct: 140 GVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGA 199

Query: 245 FCVFS--RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
             +F    M K D +SWNS+I  +   G+  EA+S F++M   G   ++ TF+  L G  
Sbjct: 200 RVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVE 259

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
               V+ G+   H    + N    +     L+ +Y + G++E A  V  +    D V W 
Sbjct: 260 DPSFVKLGMG-IHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWN 318

Query: 363 TLL 365
           TLL
Sbjct: 319 TLL 321



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 172/371 (46%), Gaps = 5/371 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A  +F+++       WN+++ AF  S   L+AI  Y  M +  ++  D  TF   L
Sbjct: 94  SLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVA-IDACTFPSVL 152

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN--MPERD 154
           KAC  +       E+HG  ++ G+   V V   L+  Y   G +  AR +FD   M + D
Sbjct: 153 KACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKED 212

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            VSWNSIIS +      LEAL L+ RM+   V  + +T V  L        + +G+ +H 
Sbjct: 213 TVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHG 272

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            A +      VYV NAL+ MYAKCG ++ A  VF+ M  RD +SWN+++ G   +    +
Sbjct: 273 AALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRD 332

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+++F+ M  +   PD ++ L L+      G +  G E  H    R  L   ++    L+
Sbjct: 333 ALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKE-VHAYAIRNGLDSNMQIGNTLI 391

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           D+Y +   ++            D + W T++          +  I +   VQ++      
Sbjct: 392 DMYAKCCCVKHMGYAFECMHEKDLISWTTIIAG-YAQNECHLEAINLFRKVQVKGMDVDP 450

Query: 395 YVLLATIYACT 405
            ++ + + AC+
Sbjct: 451 MMIGSVLRACS 461



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 165/342 (48%), Gaps = 8/342 (2%)

Query: 38  LSYAQLLFNQI--QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           L  A++LF+ I  +   T +WNS+I A       L+A+  +  M    ++  +T+TF   
Sbjct: 196 LGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVA-SNTYTFVAA 254

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+  E    +     +HG  ++S +   V V+  L+  YA  G +E A  VF +M  RD 
Sbjct: 255 LQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDY 314

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSWN+++S   Q   + +AL  +  M+      D  +++ L+++    G L  G  +H  
Sbjct: 315 VSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAY 374

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A   G   ++ +GN L+DMYAKC  +      F  M ++D++SW ++I GY  +    EA
Sbjct: 375 AIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEA 434

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG-VEYFHMMVSRYNLKPGIKHYGCLV 334
           I+ F+++ + G   D +    +L  CS  GL     +   H  V + +L   I     +V
Sbjct: 435 INLFRKVQVKGMDVDPMMIGSVLRACS--GLKSRNFIREIHGYVFKRDL-ADIMLQNAIV 491

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEI 376
           ++YG  G  + A     +    D V W +++ +C +H  + +
Sbjct: 492 NVYGEVGHRDYARRAFESIRSKDIVSWTSMI-TCCVHNGLPV 532


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 193/573 (33%), Positives = 305/573 (53%), Gaps = 29/573 (5%)

Query: 3    LKKHARYVGLNKARQAHE--IHGEWLLNSYAISVSSSLSYAQL--------LFNQIQNPQ 52
            LK   R   L    Q H   I   + LN+Y  SV   + YA+L        +  +     
Sbjct: 480  LKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDM-YAKLGKLDTAWDILIRFAGKD 538

Query: 53   TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
              +W ++I  + Q     +A+  +  ML   + R D    T  + AC  ++AL + Q++H
Sbjct: 539  VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI-RSDEVGLTNAVSACAGLQALKEGQQIH 597

Query: 113  GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
                 SG+   +     L+  Y+  G IE A   F+     D ++WN+++S + Q+  + 
Sbjct: 598  AQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNE 657

Query: 173  EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
            EAL+++ RM  E +  + FT    + + +    +  G  +H +  + G+     V NA++
Sbjct: 658  EALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAII 717

Query: 233  DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
             MYAKCG++  A   F  +  ++ +SWN+MI  Y  HG G EA+  F QM+ +   P+ +
Sbjct: 718  SMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHV 777

Query: 293  TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE-VIN 351
            T +G+L  CSH GLV++G+EYF  M + Y L P  +HY C+VD+  RAG L +A + ++ 
Sbjct: 778  TLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILE 837

Query: 352  TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
                 D ++WRTLL +C +H+N+EIGE A  +L++LE   +  YVLL+ +YA  +  +  
Sbjct: 838  MPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDAR 897

Query: 412  ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
              TR+ +K  G+K  PG SWIE+ N +H F V D++HP AD I+   +++  RA  IGY 
Sbjct: 898  DLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYV 957

Query: 472  KD-ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
            +D  SL++      +D    +   HSEKLAI+FGL + P    + ++KNLR         
Sbjct: 958  QDCFSLLSELQQEQKD---PTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDWI 1014

Query: 522  ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               S   +R++IVRD  R+HHF  G CSC DYW
Sbjct: 1015 KFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 180/367 (49%), Gaps = 15/367 (4%)

Query: 24  EWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS 83
           E LL+ Y       L  A  +F+++       WN +I+  A      +    +  M+  +
Sbjct: 107 EKLLDFYLFK--GDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNEN 164

Query: 84  LSRPDTFTFTFTLKACERVK-ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
           ++ P+  TF+  L+AC     A +  +++H  +I  G  +  +V   L+  Y+ NG ++ 
Sbjct: 165 VT-PNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDR 223

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR VFD +  +D  SW ++IS  ++    +EA++L+  M    +    +    +LS+C  
Sbjct: 224 ARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKK 283

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + +L +G  LH +  ++GF    YV NALV +Y   G+L SA  +FS M +RD +++N++
Sbjct: 284 IESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTL 343

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I G    G G++A+  FK+M + G  PDS T   L+  CS  G +  G +  H   ++  
Sbjct: 344 INGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSG-QQLHAYTTKLG 402

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL----------GSCKIHR 372
                K  G L++LY +   +E AL     +   + VLW  +L           S +I R
Sbjct: 403 FASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR 462

Query: 373 NVEIGEI 379
            ++I EI
Sbjct: 463 QMQIEEI 469



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 172/326 (52%), Gaps = 2/326 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +      +W ++I   +++   ++AI  +  M +  +  P  + F+  L AC+
Sbjct: 224 ARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGI-MPTPYAFSSVLSACK 282

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++++L   ++LHG V++ G+     V   L+  Y   G + +A  +F NM +RD V++N+
Sbjct: 283 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNT 342

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+  +Q  +  +A++L++RM+ + +  D  TL  L+ +C+  G L  G  LH    ++G
Sbjct: 343 LINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLG 402

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F  +  +  AL+++YAKC ++++A   F      +V+ WN M+V YG+      +   F+
Sbjct: 403 FASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR 462

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QM +    P+  T+  +L  C   G +E G E  H  + + + +        L+D+Y + 
Sbjct: 463 QMQIEEIVPNQYTYPSILKTCIRLGDLELG-EQIHSQIIKTSFQLNAYVCSVLIDMYAKL 521

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLG 366
           GKL+ A +++   +  D V W T++ 
Sbjct: 522 GKLDTAWDILIRFAGKDVVSWTTMIA 547



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 169/348 (48%), Gaps = 8/348 (2%)

Query: 26  LLNSYA--ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS 83
           LLN YA    + ++L+Y   L  +++N     WN ++ A+   L  L+  F     +   
Sbjct: 413 LLNLYAKCSDIETALNY--FLETEVEN--VVLWNVMLVAYGL-LDDLRNSFRIFRQMQIE 467

Query: 84  LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
              P+ +T+   LK C R+  L   +++H  +I++ ++    V + L+  YA  G ++ A
Sbjct: 468 EIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTA 527

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
             +      +D+VSW ++I+ YTQ +F  +AL  + +M    +  D   L   +S+CA +
Sbjct: 528 WDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGL 587

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
            AL  G  +H  AC  GF   +   NALV +Y+KCGN++ A+  F +    D ++WN+++
Sbjct: 588 QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALV 647

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            G+   G  +EA+  F +M   G   ++ TF   +   S    +++G +  H ++++   
Sbjct: 648 SGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGY 706

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
               +    ++ +Y + G +  A +     S  + V W  ++ +   H
Sbjct: 707 DSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKH 754



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 146/327 (44%), Gaps = 10/327 (3%)

Query: 86  RPDTFTFTFTLKACERVK-ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
           RP+  T  + L+ C +   +L++ ++LH  +++ G++    +S  L+  Y   G ++ A 
Sbjct: 64  RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGAL 123

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VFD MPER + +WN +I      S   +   L+ RM  E+V  +  T   +L +C   G
Sbjct: 124 KVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC-RGG 182

Query: 205 ALNMGIF--LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           ++   +   +H      G  +S  V N L+D+Y++ G +D A  VF  +  +D  SW +M
Sbjct: 183 SVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAM 242

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I G   +    EAI  F  M + G  P    F  +L  C     +E G E  H +V +  
Sbjct: 243 ISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHGLVLKLG 301

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
                     LV LY   G L  A  + +  S  D V + TL+           GE AM+
Sbjct: 302 FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLS---QCGYGEKAME 358

Query: 383 --NLVQLEAASAGDYVLLATIYACTKD 407
               +QL+        L + + AC+ D
Sbjct: 359 LFKRMQLDGLEPDSNTLASLVVACSSD 385



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 11/210 (5%)

Query: 167 QASFHLEALKLYERMRFEDVGLDGF----------TLVCLLSSCAHV-GALNMGIFLHRI 215
           +ASF   ++ + E   F++ G+D            TL  LL  C    G+L+ G  LH  
Sbjct: 34  RASFTAISVSISEDESFQENGIDSVENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQ 93

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             ++GF  +  +   L+D Y   G+LD A  VF  M +R + +WN MI          + 
Sbjct: 94  ILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKV 153

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
              F +M+     P+  TF G+L  C    +  + VE  H  +    L         L+D
Sbjct: 154 FCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLID 213

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           LY R G +++A  V +     D   W  ++
Sbjct: 214 LYSRNGFVDRARRVFDGLYLKDHSSWVAMI 243


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 197/542 (36%), Positives = 304/542 (56%), Gaps = 29/542 (5%)

Query: 26   LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
            LL+ Y  S   +L+ A  +F ++ +    +W S I A+ +      AI  ++ M    + 
Sbjct: 612  LLDMY--SKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGV- 668

Query: 86   RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            RPD +T T  + AC    +L+K +++H +VI++G    + V+  L+  YA  G +E AR 
Sbjct: 669  RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARL 728

Query: 146  VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
            VF  +P +D+VSWN++I  Y+Q S   EAL+L+  M+ +    D  T+ C+L +CA + A
Sbjct: 729  VFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAA 787

Query: 206  LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
            L+ G  +H      G+   ++V  ALVDMYAKCG L  A  +F  + K+D++SW  MI G
Sbjct: 788  LDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAG 847

Query: 266  YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
            YG+HG G+EAIS F +M +AG  PD  +F  +L  CSH GL+ EG ++F+ M +   ++P
Sbjct: 848  YGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEP 907

Query: 326  GIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
             ++HY C+VDL  R G L KA + I +     D  +W  LL  C+IH +V++ E   +++
Sbjct: 908  KLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHI 967

Query: 385  VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
             +LE  +   YV+LA +YA  +  E V + RK ++  G K  PG SWIE+G + + FV  
Sbjct: 968  FELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAG 1027

Query: 445  DKSHPDA---DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKS--SAYHSEKL 499
            +  HP A   D++ RKL   M    +    +    V +    +ED +EK      HSEK 
Sbjct: 1028 NSKHPQAKRIDVLLRKLTMQMQNEDYFSMFR---YVLI----NEDDMEKEMIQCGHSEKS 1080

Query: 500  AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
            A+AFG+   P G ++R+ KN R            S    R++++RD  R+HHF+DGLCSC
Sbjct: 1081 AMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSC 1140

Query: 548  GD 549
             D
Sbjct: 1141 RD 1142



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 170/329 (51%), Gaps = 2/329 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L   + +F++I N +   WN L+  +A+  +  +++  +  M    +   + +TFT  LK
Sbjct: 420 LVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG-NCYTFTCVLK 478

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
               +  + +C+ +HG+V++ G+     V  +L+  Y   G +E+A ++FD + E D+VS
Sbjct: 479 CFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVS 538

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNS+I+      F    L+++ +M    V +D  TLV +L + A++G L++G  LH    
Sbjct: 539 WNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGV 598

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +  F E V   N L+DMY+KCGNL+ A  VF +M    ++SW S I  Y   G   +AI 
Sbjct: 599 KACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIG 658

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M   G  PD  T   ++  C+    +++G +  H  V +  +   +     L+++Y
Sbjct: 659 LFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD-VHSYVIKNGMGSNLPVTNALINMY 717

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            + G +E+A  V +     D V W T++G
Sbjct: 718 AKCGSVEEARLVFSKIPVKDIVSWNTMIG 746



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 181/376 (48%), Gaps = 17/376 (4%)

Query: 9   YVGLNKARQAHEIHGEWLLNSYA--ISVSSSL----------SYAQLLFNQIQNPQTQAW 56
           +  L K ++   +HG  L   +    +V +SL            A  LF+++  P   +W
Sbjct: 480 FAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSW 539

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
           NS+I     +      +  +  ML+  +   D  T    L A   +  L+  + LHGF +
Sbjct: 540 NSMINGCVVNGFSGNGLEIFIQMLILGV-EVDLTTLVSVLVAWANIGNLSLGRALHGFGV 598

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
           ++ +   VV S  L+  Y+  G +  A  VF  M +  +VSW S I+ Y +   + +A+ 
Sbjct: 599 KACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIG 658

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           L++ M+ + V  D +T+  ++ +CA   +L+ G  +H    + G   ++ V NAL++MYA
Sbjct: 659 LFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYA 718

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           KCG+++ A  VFS++  +D++SWN+MI GY  +   +EA+  F  M    F PD IT   
Sbjct: 719 KCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMAC 777

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-LVDLYGRAGKLEKALEVINTSSP 355
           +L  C+    +++G E    ++ R        H  C LVD+Y + G L  A  + +    
Sbjct: 778 VLPACAGLAALDKGREIHGHILRRGYFSD--LHVACALVDMYAKCGLLVLAQLLFDMIPK 835

Query: 356 SDPVLWRTLLGSCKIH 371
            D + W  ++    +H
Sbjct: 836 KDLISWTVMIAGYGMH 851



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 171/402 (42%), Gaps = 21/402 (5%)

Query: 4   KKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           K H R++   + R+   +H         + VS S       F    +  TQ  N+ I  F
Sbjct: 301 KSHNRFIFFKQPRRTCLLHS-------TVCVSPS-------FTNTTHSVTQNQNAKINKF 346

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTF-TFTFTLKACERVKALNKCQELHGFVIRSGYER 122
            +      AI     +L  S S      ++   L+ C   K+L   + +H  +I +G   
Sbjct: 347 CEMGDLRNAI----ELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISI 402

Query: 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182
              +   L+  Y   G +   R +FD +    +  WN ++S Y +     E++ L+++M+
Sbjct: 403 DEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQ 462

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
              V  + +T  C+L   A +G +     +H    ++GF  +  V N+L+  Y K G ++
Sbjct: 463 KLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVE 522

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
           SA  +F  + + DV+SWNSMI G  V+G     +  F QML+ G   D  T + +L   +
Sbjct: 523 SAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWA 582

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           + G +  G    H    +      +     L+D+Y + G L  A EV      +  V W 
Sbjct: 583 NIGNLSLG-RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWT 641

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
           + + +  +   +    I + + +Q +      Y + + ++AC
Sbjct: 642 STIAA-YVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHAC 682


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 311/562 (55%), Gaps = 64/562 (11%)

Query: 16  RQAHEIHGEWLL-----NSYAISVSSSL-------SYAQLLFNQIQNPQTQAWNSLIRAF 63
           R+  +IHG  ++     N +  +  + L         A+ LF+++       WN +I  +
Sbjct: 172 RRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGY 231

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
            ++  P + I  ++ M +++L +PD  T +  L                G  I++GY   
Sbjct: 232 LKNRQPEKCIDLFHEMQVSNL-KPDQVTASSVL----------------GAYIQAGY--- 271

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
                           I+ AR VF  + E+D V W  +I    Q     +AL L+  M  
Sbjct: 272 ----------------IDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLL 315

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           E+   DG+T+  ++SSCA + +L  G  +H  A  MG  + + V +ALVDMY KCG    
Sbjct: 316 ENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRD 375

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A+ +FS M+ R+V+SWNSMI GY ++G+  EA+S ++ ML     PDS+TF+G+L  C H
Sbjct: 376 AWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVH 435

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWR 362
            GLVEEG EYF  M  ++ L+P   HY C+V+L+GR+G ++KA+++I++ S   + ++W 
Sbjct: 436 AGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWT 495

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
           T+L  C +  +++ GE+A + L++L   +A  Y++L+ +YA     + VA  R L+KS  
Sbjct: 496 TVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKH 555

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           +K    +SWIEI N+VHKFV DD++HPDA +I+ +L  ++ + +  G++ + +LV     
Sbjct: 556 VKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGFSPNTNLVLHDFG 615

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDG-TSLRIVKNLRSIA------------YSRDL 529
             E    +S  YHSEKLA+A+GL   P G T +RI+KN+R+ A              R +
Sbjct: 616 EDEKL--ESINYHSEKLALAYGLIKKPHGVTPIRIIKNIRTCADCHIFMKFVSNITRRPV 673

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           I+RD  R+HHF +G CSC DYW
Sbjct: 674 ILRDSNRFHHFVEGKCSCKDYW 695



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 128/241 (53%), Gaps = 13/241 (5%)

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           YA +G++E  R +FDNMP RD VS+N++IS +        AL ++ RM+ E +    +T 
Sbjct: 99  YAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTH 158

Query: 194 VCLLSSCAHVGALNMGIFLHR--IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           V +L++C  +  L  G  +H   I C +G   +V+V NAL D+YA+CG +D A  +F RM
Sbjct: 159 VSVLNACTQLLDLRRGKQIHGRIIICNLG--GNVFVCNALTDLYARCGEIDQARRLFDRM 216

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
             R+V++WN MI GY  + + ++ I  F +M ++   PD +T   +L      G ++E  
Sbjct: 217 VIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEAR 276

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL----EVINTSSPSDPVLWRTLLGS 367
           + F  +  +  +   I   GC      + GK E AL    E++  ++  D     +++ S
Sbjct: 277 KVFGEIREKDEVCWTIMIVGC-----AQNGKEEDALLLFSEMLLENARPDGYTISSVVSS 331

Query: 368 C 368
           C
Sbjct: 332 C 332



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           NA++ +YAK G ++    +F  M  RD +S+N++I G+  +GRG  A+  F +M   G  
Sbjct: 93  NAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLK 152

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           P   T + +L  C+    +  G +  H  +   NL   +     L DLY R G++++A  
Sbjct: 153 PTEYTHVSVLNACTQLLDLRRGKQ-IHGRIIICNLGGNVFVCNALTDLYARCGEIDQARR 211

Query: 349 VINTSSPSDPVLWRTLLGSCKIHRNVE-----IGEIAMKNLVQLEAASAGDYVLLATIYA 403
           + +     + V W  ++     +R  E       E+ + NL   +  ++   VL A I A
Sbjct: 212 LFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASS--VLGAYIQA 269

Query: 404 CTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMH 463
              DE      RK+      K    W+ + +G         +    DA +++   E ++ 
Sbjct: 270 GYIDE-----ARKVFGEIREKDEVCWTIMIVG------CAQNGKEEDALLLFS--EMLLE 316

Query: 464 RAKFIGYT 471
            A+  GYT
Sbjct: 317 NARPDGYT 324


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 202/537 (37%), Positives = 292/537 (54%), Gaps = 27/537 (5%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPL-QAIFYYNHMLMASLSRPDTFTFT 93
           +S L+  Q +F+ +      +WN++I A A S + + +AI  +  M+ A  S P+  TF 
Sbjct: 252 TSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWS-PNRVTFI 310

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
             L     +       ++H  +++   +    +   L+  Y  +G +E    +F  M ER
Sbjct: 311 NLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSER 370

Query: 154 -DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
            D VSWNS+IS Y       +A+ L   M      LD FT   +LS+CA V  L  G+ +
Sbjct: 371 RDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEV 430

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H  A        V +G+ALVDMY+KCG +D A   F+ M  R++ SWNSMI GY  HG G
Sbjct: 431 HACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHG 490

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           D A+  F +M ++G  PD ITF+G+L  CSH GLV+EG EYF  M   Y L P ++HY C
Sbjct: 491 DNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSC 550

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSC--KIHRNVEIGEIAMKNLVQLE 388
           +VDL GRAG+L+K    IN   P  P  ++WRT+LG+C     R  E+G  A + L  ++
Sbjct: 551 MVDLLGRAGELDKIENFIN-KMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMD 609

Query: 389 AASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSH 448
             +A +YVLL+ +YA     E +ARTR+ ++   +K   G SW+ + + VH FV  D SH
Sbjct: 610 PQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSH 669

Query: 449 PDADMIYRKLEEIMHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLA 506
           P+  +IY KL+E+  + +  GY      +L  +   + E+ L    +YHSEKLA+AF L 
Sbjct: 670 PEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELL----SYHSEKLAVAFVL- 724

Query: 507 TTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           T   G  +RI+KNLR            S    R +++RD  R+HHF DG CSC DYW
Sbjct: 725 TRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 172/344 (50%), Gaps = 8/344 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y + +   +S A+ LF+++ +     W  LI  + Q+  P  A      M+     
Sbjct: 41  LINVY-VRIGDCVS-ARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGF- 97

Query: 86  RPDTFTFTFTLKAC-ERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGVIEAA 143
            P+ F F   ++AC E +    K +++HG+ IR+G     V V   L+  YA  G I+ A
Sbjct: 98  LPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHA 157

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           RSVF  M ++D VSWNS+I+   Q     +A+K Y  MR   +    F L+  LSSCA +
Sbjct: 158 RSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASL 217

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           G + +G   H    ++G    V V N L+ +YA+   L     VFS M +RD +SWN++I
Sbjct: 218 GCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVI 277

Query: 264 VGYGVHGRG-DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
                 G    EAI  F +M+ AG+ P+ +TF+ LL   S      +     H ++ +YN
Sbjct: 278 GALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLS-TSKLSHQIHALILKYN 336

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLL 365
           +K        L+  YG++G++E   E+ +  S   D V W +++
Sbjct: 337 VKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMI 380



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 122/259 (47%), Gaps = 3/259 (1%)

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
            H  V++ G++  + +   L+  Y   G   +AR +FD MP+R+ V+W  +IS YTQ   
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL-NMGIFLHRIACEMGFVES-VYVG 228
             +A  + + M FE    + F     + +C         G  +H  A   G  ++ V VG
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVG 141

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N L++MYAKCG++D A  VF  M  +D +SWNSMI G   +   ++A+  +  M   G  
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLM 201

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           P +   +  L  C+  G +  G +  H    +  L   +     L+ LY    +L +  +
Sbjct: 202 PSNFALISALSSCASLGCILLG-QQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQK 260

Query: 349 VINTSSPSDPVLWRTLLGS 367
           V +     D V W T++G+
Sbjct: 261 VFSWMLERDQVSWNTVIGA 279



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 2/187 (1%)

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           GF   +++ N L+++Y + G+  SA  +F  M  R+ ++W  +I GY  +G  ++A    
Sbjct: 30  GFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVL 89

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG-CLVDLYG 338
           K+M+  GF P+   F   +  C    L        H    R  L       G  L+++Y 
Sbjct: 90  KEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYA 149

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           + G ++ A  V       D V W +++     ++  E   +   N ++       ++ L+
Sbjct: 150 KCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFE-DAVKSYNSMRKTGLMPSNFALI 208

Query: 399 ATIYACT 405
           + + +C 
Sbjct: 209 SALSSCA 215


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 199/584 (34%), Positives = 311/584 (53%), Gaps = 51/584 (8%)

Query: 16  RQAHEIHGEWLLNSYAISV------------SSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           R+   +H   +   Y  SV              SL  A  +F+++      +W ++I A+
Sbjct: 260 REGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAY 319

Query: 64  AQSLSPLQAIFYYNHMLMASLS--------------------RPDTFTFTFTLKACERVK 103
           +Q     QA+  +   +  SL+                     P+ FTF   L +C    
Sbjct: 320 SQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSL 379

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
                +++H  +I+  YE  V V ++L+  YA +G I  AR+VF+ +PERD+VS  +IIS
Sbjct: 380 GFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIIS 439

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y Q     EAL+L+ R++ E +  +  T   +L++ + + AL++G  +H          
Sbjct: 440 GYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPS 499

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            V + N+L+DMY+KCGNL  +  +F  M +R V+SWN+M+VGY  HG G E +  F  M 
Sbjct: 500 FVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMR 559

Query: 284 -MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS-RYNLKPGIKHYGCLVDLYGRAG 341
                 PDS+T L +L GCSH GL ++G+  F+ M S +  ++P ++HYGC+VDL GR+G
Sbjct: 560 EETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSG 619

Query: 342 KLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           ++E+A E I    P +P   +W +LLG+C++H NV+IGE A + L+++E  +AG+YV+L+
Sbjct: 620 RVEEAFEFIK-KMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILS 678

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            +YA     E V+  R L+    +   PG S IE+   +H F   D+SHP  + I  K++
Sbjct: 679 NLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVK 738

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           E+    K +GY  D  L  V     E+  EK    HSEKLA++FGL  +P    +R++KN
Sbjct: 739 ELSTSFKEVGYVPD--LSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKN 796

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S  Y R++ +RD+ R+H    G CSC DYW
Sbjct: 797 LRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 159/337 (47%), Gaps = 34/337 (10%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L  C   +A  + Q +H  +I++ Y   V + T L+  Y     +  A +VFD MPER++
Sbjct: 250 LNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNV 309

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGL-------------------------DG 190
           VSW ++IS Y+Q  +  +AL L+    F DV +                         + 
Sbjct: 310 VSWTAMISAYSQRGYASQALNLF----FADVKISLTGVYAIDKLKLSNPNRPWVCTEPNE 365

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
           FT   +L+SC       +G  +H +  ++ + + V+VG++L+DMYAK G +  A  VF  
Sbjct: 366 FTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFEC 425

Query: 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
           + +RDV+S  ++I GY   G  +EA+  F+++   G   + +T+ G+L   S    ++ G
Sbjct: 426 LPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLG 485

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCK 369
            +  H  V R  +   +     L+D+Y + G L  +  + +T      + W  +L G  K
Sbjct: 486 KQ-VHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSK 544

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYV-LLATIYACT 405
                E+  + +  L++ E     D V +LA +  C+
Sbjct: 545 HGEGREV--LKLFTLMREETKVKPDSVTILAVLSGCS 579



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 29/200 (14%)

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M+FE+          +L+ C +  A   G  +H    +  ++ SV++   L+ +Y KC +
Sbjct: 241 MKFENYN-------AILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDS 293

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF---KQMLMAGFH--------- 288
           L  A  VF  M +R+V+SW +MI  Y   G   +A++ F    ++ + G +         
Sbjct: 294 LGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSN 353

Query: 289 ---------PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
                    P+  TF  +L  C+       G +  H ++ + N +  +     L+D+Y +
Sbjct: 354 PNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQ-IHSLIIKLNYEDHVFVGSSLLDMYAK 412

Query: 340 AGKLEKALEVINTSSPSDPV 359
            GK+ +A  V       D V
Sbjct: 413 DGKIHEARTVFECLPERDVV 432


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 196/566 (34%), Positives = 305/566 (53%), Gaps = 35/566 (6%)

Query: 11  GLNKARQAHEIHGEWLLNSYA--ISVSSSL----------SYAQLLFNQIQNPQTQAWNS 58
            L   R   E+HG  +   +   +SV++SL            A+++F++++     +W +
Sbjct: 308 ALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTA 367

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           +I  + ++  P +A+  Y  M    +  PD  T    L AC  +  L+K   LH F  R+
Sbjct: 368 MISGYEKNGLPEKAVETYTIMEHEGVV-PDEITIASVLSACAGLGLLDKGIMLHEFADRT 426

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G    V+V+ +L+  Y+    I+ A  VF  +P ++++SW SII          EAL  +
Sbjct: 427 GLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFF 486

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
           ++M    +  +  TLV +LS+CA +GAL+ G  +H  A   G     ++ NAL+DMY +C
Sbjct: 487 QQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRC 545

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G ++ A+  F+   K DV SWN ++ GY   G+G  A+  F +M+ +  +PD ITF  LL
Sbjct: 546 GRMEPAWNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLL 604

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSD 357
           C CS  G+V +G+EYF  M  ++++ P +KHY  +VDL GRAG+LE A E I       D
Sbjct: 605 CACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPD 664

Query: 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
           P +W  LL +C+I++NVE+GE+A +++ +++  S G Y+LL  +YA +   + VAR RK+
Sbjct: 665 PAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKI 724

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDES 475
           ++ N +   PG SW+E+  QVH F+  D  HP    I   LE    + +  G   +KD  
Sbjct: 725 MRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSR 784

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
              +  S +E F       HSE+LAIAFGL  T  GT + + KNL             S 
Sbjct: 785 RDDIDASKAEIF-----CGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISK 839

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGD 549
              R + VRD  ++HHF+DG+CSCGD
Sbjct: 840 VVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 204/393 (51%), Gaps = 8/393 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F ++      +WN L+  +A++    +A+  Y+ ML   + RPD +TF   L+
Sbjct: 145 LVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGI-RPDVYTFPCVLR 203

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C  +  L + +E+H  VIR G+E  V V   L+  Y   G I +AR VFD MP RD +S
Sbjct: 204 TCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRIS 263

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++IS Y +    LE L+L+  MR   V  D  T+  ++S+C  +G   +G  +H    
Sbjct: 264 WNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVI 323

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + GFV  V V N+L+ M++  G  D A  VFS+M  +D++SW +MI GY  +G  ++A+ 
Sbjct: 324 KTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVE 383

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            +  M   G  PD IT   +L  C+  GL+++G+   H    R  L   +     L+D+Y
Sbjct: 384 TYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI-MLHEFADRTGLTSYVIVANSLIDMY 442

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI-HRNVEIGEIAMKNLVQLEAASAGDYV 396
            +   ++KALEV +     + + W +++   ++ +R+ E      + ++ L+  S     
Sbjct: 443 SKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSV---T 499

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           L++ + AC +   G     K I ++ ++T  G+
Sbjct: 500 LVSVLSACARI--GALSCGKEIHAHALRTGLGF 530



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 145/317 (45%), Gaps = 7/317 (2%)

Query: 49  QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKC 108
           QNP     NSLI          +A+ + + M    +S  +  T+   L+ CE  +A ++ 
Sbjct: 60  QNP-----NSLILELCLKGDLEKALIHLDSMQELQVSVEEE-TYIALLRLCEWKRAASEG 113

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
             +H +V ++     V +   L+  +   G +  A  VF  M ERDL SWN ++  Y +A
Sbjct: 114 SRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKA 173

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
            +  EAL LY RM +  +  D +T  C+L +C  +  L  G  +H      GF   V V 
Sbjct: 174 GYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVV 233

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           NAL+ MY KCG++ SA  VF RM +RD +SWN+MI GY  +    E +  F  M      
Sbjct: 234 NALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVD 293

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           PD +T   ++  C   G    G E  H  V +      +     L+ ++   G  ++A  
Sbjct: 294 PDLMTMTSVISACEALGDERLGRE-VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEM 352

Query: 349 VINTSSPSDPVLWRTLL 365
           V +     D V W  ++
Sbjct: 353 VFSKMEFKDLVSWTAMI 369


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 190/551 (34%), Positives = 292/551 (52%), Gaps = 29/551 (5%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL +YA   S+ L  A+  F+ IQ+P   +WN++  A+ Q     +A+  +  ML+ 
Sbjct: 392 GTTLLTTYA--RSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLE 449

Query: 83  SLSRPDTFTFTFTLKAC-----ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
            + RP   TF   L AC     +   A+ K   +   +  +G E    V+   +  YA  
Sbjct: 450 GV-RPSVATFITALTACAAYPPQTASAIGK--RIQSLLEEAGLEGDTAVANATLNMYAKC 506

Query: 138 GVIEAARSVFDNM--PERDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLV 194
           G +  AR+VF+ +    RD ++WNS+++ Y       EA +L++ M  E  V  +  T V
Sbjct: 507 GSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFV 566

Query: 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF--SRMR 252
            +L +     ++  G  +H      GF     + NAL++MYAKCG+LD A  +F  S   
Sbjct: 567 AVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSN 626

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           + DV++W S+I GY  +G+ + A+  F  M   G  P+ +TF+  L  C+H G +E+G E
Sbjct: 627 QEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCE 686

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372
               M   + + P  KH+ C+VDL GR G+L++A +++  +S +D + W  LL +CK  +
Sbjct: 687 LLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVITWMALLDACKNSK 746

Query: 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWI 432
            +E GE   + ++QL+   A  Y++LA++YA        A  RK +   GI+  PG S +
Sbjct: 747 ELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAV 806

Query: 433 EIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSS 492
           E+  ++H F   DKSHP ++ IY +LE +    K  GY  D  LV      S++  E+  
Sbjct: 807 EVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVL--HDVSQEHKERLL 864

Query: 493 AYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHF 540
             HSEKLAIAFGL +TP G+ LR++KNLR            S    RD+++RD  RYHHF
Sbjct: 865 MRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHF 924

Query: 541 RDGLCSCGDYW 551
             G CSCGDYW
Sbjct: 925 TSGTCSCGDYW 935



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 191/428 (44%), Gaps = 24/428 (5%)

Query: 17  QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQ---AWNSLIRAFAQSLSPLQAI 73
           + + + G  L++ Y  S   SL  A+  F+++     +    WN++I AF ++ S  +A+
Sbjct: 173 EENSVLGNALISMY--SKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREAL 230

Query: 74  FYYNHMLMASLSRPDTFTFTFTLKACERVK--ALNKCQELHGFVIRSGYERCVVVSTNLM 131
             +  M       P++ TF   L +C      +L   + +HG ++ +G ER   V T L+
Sbjct: 231 QLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALV 290

Query: 132 RGYAANGVIEAARSVF----DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
             Y   G ++ A  VF    D  P   LV+ +++IS   Q  +  E+L+L+  M  E   
Sbjct: 291 DSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTK 350

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEM-GFVESVYVGNALVDMYAKCGNLDSAFC 246
             G TLV +L++C+ +   +   F+   A E+        +G  L+  YA+  +L  A  
Sbjct: 351 PSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARA 410

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
            F  ++  DV+SWN+M   Y  H R  EA+  F++ML+ G  P   TF+  L  C+    
Sbjct: 411 TFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPP 470

Query: 307 VEEGV--EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWR 362
                  +    ++    L+         +++Y + G L  A  V    SP+  D + W 
Sbjct: 471 QTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWN 530

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACTKDEEGVARTRKL--- 417
           ++L +   H    +G+ A +    +EA      + V    +   +     +A+ R++   
Sbjct: 531 SMLAAYGHH---GLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHAR 587

Query: 418 IKSNGIKT 425
           + SNG ++
Sbjct: 588 VVSNGFES 595



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 140/275 (50%), Gaps = 12/275 (4%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVI--RSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
           T+   L+AC R++AL + Q LH  ++  R        ++++L+  +A  G +  A ++ D
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALAD 104

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
                 + S  ++I  + +     +A++L++RM   +V  +   L+ L+++C+ +G L  
Sbjct: 105 RFAS--VYSCTAMIRAWMEHGRPDKAMELFDRM---EVRPNCHALIALVNACSCLGNLAA 159

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNL---DSAFCVFSRMRKRDVLSWNSMIVG 265
           G  +H    +  F E+  +GNAL+ MY+KCG+L     AF    R  KRDV++WN+MI  
Sbjct: 160 GRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISA 219

Query: 266 YGVHGRGDEAISFFKQMLMAGF-HPDSITFLGLLCGCSHQGLVE-EGVEYFHMMVSRYNL 323
           +  +G   EA+  F+ M   G   P+S+TF+ +L  C   GL+  E V   H  +    +
Sbjct: 220 FLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGI 279

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
           +        LVD YG+ G L+ A EV       +P
Sbjct: 280 EREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEP 314


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 176/438 (40%), Positives = 270/438 (61%), Gaps = 10/438 (2%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR----PDTFTFTFT 95
           YA LLF  + +P    +N++IRA+  +   + AI  Y  ML          PD FTF F 
Sbjct: 109 YANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFV 168

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD- 154
           +K+C  +   +  +++HG V + G +   VV  +L+  Y     ++ A  VF+ M ERD 
Sbjct: 169 VKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDA 228

Query: 155 -LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
            + SW +I+S Y +   + +AL+ + RM+   +  D  +LV +L  CA +GAL +G ++H
Sbjct: 229 TIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIH 288

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
             A + GF+ ++ V NAL++MYAKCG++D    +F +M++RDV+SW++MIVG   HGR  
Sbjct: 289 IYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAR 348

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           EAI  F++M  A   P  ITF+GLL  C+H GL+ EG+ YF  M   YN++PG++HYGCL
Sbjct: 349 EAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCL 408

Query: 334 VDLYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           V+L G +G+L++ALE++      P  P+ W +LL SC+ H N++I  IAM++L++LE A 
Sbjct: 409 VNLLGLSGRLDQALELVKKMPRKPDSPI-WGSLLSSCRSHGNLKIAVIAMEHLLELEPAD 467

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
            G+YVLL+ +YA     +GV+R RKL++S  +K TPG S IE+ N V +F   D S P +
Sbjct: 468 TGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFS 527

Query: 452 DMIYRKLE-EIMHRAKFI 468
             I R L+  +MH++K I
Sbjct: 528 KAICRVLKLLVMHQSKII 545


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 193/553 (34%), Positives = 297/553 (53%), Gaps = 21/553 (3%)

Query: 14  KARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAI 73
           + R+ + +    L+N Y    +  L  A+ +F+++ + +   WN++I    Q     + +
Sbjct: 19  RMRKKNYMSSNILINGYV--RAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGL 76

Query: 74  FYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRG 133
             +  M     S PD +T          +++++  Q++HG+ I+ G E  +VV+++L   
Sbjct: 77  SLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHM 135

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           Y  NG ++    V  +MP R+LV+WN++I    Q       L LY+ M+      +  T 
Sbjct: 136 YMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITF 195

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
           V +LSSC+ +     G  +H  A ++G    V V ++L+ MY+KCG L  A   FS    
Sbjct: 196 VTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERED 255

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
            D + W+SMI  YG HG+GDEAI  F  M        + + FL LL  CSH GL ++G+E
Sbjct: 256 EDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLE 315

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKI 370
            F MMV +Y  KPG+KHY C+VDL GRAG L++A E I  S P  +D V+W+TLL +C I
Sbjct: 316 LFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQA-EAIIRSMPIKTDIVIWKTLLSACNI 374

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS 430
           H+N E+ +   K ++Q++   +  YVLLA ++A  K    V+  RK ++   +K   G S
Sbjct: 375 HKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGIS 434

Query: 431 WIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEK 490
           W E   +VH+F + D+S   +  IY  L+E+    K  GY  D +  +V     E+  E 
Sbjct: 435 WFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTA--SVLHDMDEEEKES 492

Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYH 538
               HSEKLA+AF L   P+G  +RI+KNLR            S+  +R++ +RD  R+H
Sbjct: 493 DLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFH 552

Query: 539 HFRDGLCSCGDYW 551
           HF +G CSCGDYW
Sbjct: 553 HFINGKCSCGDYW 565



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 32/165 (19%)

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLS-------------------------------WN 260
           + MY+K G+  SA  V+ RMRK++ +S                               WN
Sbjct: 1   MSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWN 60

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           +MI G       +E +S F++M   GF PD  T   +  G +    V  G +  H    +
Sbjct: 61  AMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIG-QQIHGYTIK 119

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           Y L+  +     L  +Y R GKL+    VI +    + V W TL+
Sbjct: 120 YGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 164


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 194/570 (34%), Positives = 298/570 (52%), Gaps = 33/570 (5%)

Query: 12  LNKARQAHEIHGEWLLNSYAISV------------SSSLSYAQLLFNQIQNPQTQ-AWNS 58
           +N  R   EIHG  +   +   V               + YA+ +F+ +   + +  W++
Sbjct: 233 VNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSA 292

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMA--SLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
           ++ A+       +A+  +  +LM    +      T    ++ C  +  L+    LH + I
Sbjct: 293 MVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAI 352

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
           +SG+   ++V   L+  YA  G+I  A   F+ M  RD VS+ +IIS Y Q     E L+
Sbjct: 353 KSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLR 412

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           ++  M+   +  +  TL  +L +CAH+  L+ G   H  A   GF     + NAL+DMYA
Sbjct: 413 MFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYA 472

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           KCG +D+A  VF RM KR ++SWN+MI+ YG+HG G EA+  F  M   G  PD +TF+ 
Sbjct: 473 KCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFIC 532

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
           L+  CSH GLV EG  +F+ M   + + P ++HY C+VDL  RAG  ++    I    P 
Sbjct: 533 LISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIE-KMPL 591

Query: 357 DP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
           +P   +W  LL +C++++NVE+GE   K + +L   S G++VLL+ +Y+     +  A+ 
Sbjct: 592 EPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQV 651

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDD-KSHPDADMIYRKLEEIMHRAKFIGYTKD 473
           R   K  G + +PG SWIEI   VH F+    +SHP    I  KL+E++   K +GY  +
Sbjct: 652 RFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAE 711

Query: 474 ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------ 521
            S V       E   E+   YHSEKLAIAFG+ +      + + KNLR            
Sbjct: 712 SSYVFQDVEEEEK--ERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFI 769

Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           S+   RD+ VRD  R+HHF+DG+C+CGD+W
Sbjct: 770 SLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 187/377 (49%), Gaps = 13/377 (3%)

Query: 36  SSLSYAQLLFNQIQN-PQTQA-WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93
           S L  A+ +F+++ + P+    WN LIRA+A +    +AI  Y  ML   ++ P+ FTF 
Sbjct: 65  SELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT-PNRFTFP 123

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
           F LKAC  +K  ++ +E+H  + R   E  V VST L+  YA  G ++ A+ VFD M +R
Sbjct: 124 FVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKR 183

Query: 154 DLVSWNSIISCYT--QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           D+V+WNS+IS ++  + S+  E  +L  +M+  DV  +  T+V +L + A V +L  G  
Sbjct: 184 DVVAWNSMISGFSLHEGSYD-EVARLLVQMQ-NDVSPNSSTIVGVLPAVAQVNSLRHGKE 241

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHG 270
           +H      GFV  V VG  ++D+Y KC  +D A  +F  M   ++ ++W++M+  Y V  
Sbjct: 242 IHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCD 301

Query: 271 RGDEAISFFKQMLMAG---FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
              EA+  F Q+LM         ++T   ++  C++   +  G    H    +      +
Sbjct: 302 FMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGT-CLHCYAIKSGFVLDL 360

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
                L+ +Y + G +  A+   N     D V +  ++     + N E G + M   +QL
Sbjct: 361 MVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEG-LRMFLEMQL 419

Query: 388 EAASAGDYVLLATIYAC 404
              +     L + + AC
Sbjct: 420 SGINPEKATLASVLPAC 436



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 140/286 (48%), Gaps = 13/286 (4%)

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN-------LMRGYAANGVIEAARS 145
           T  L++C + K+L + + +H  +++  +       TN       L+  Y A   ++ AR 
Sbjct: 13  TVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARH 72

Query: 146 VFDNMPER--DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           VFD MP R  ++V WN +I  Y     + EA+ LY +M    +  + FT   +L +C+ +
Sbjct: 73  VFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSAL 132

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
              + G  +H     +    +VYV  ALVD YAKCG LD A  VF +M KRDV++WNSMI
Sbjct: 133 KEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMI 192

Query: 264 VGYGVH-GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
            G+ +H G  DE      QM      P+S T +G+L   +    +  G E     V R  
Sbjct: 193 SGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGF 251

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGS 367
           +   +   G ++D+YG+   ++ A  + +      + V W  ++G+
Sbjct: 252 VGDVVVGTG-ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 201/581 (34%), Positives = 311/581 (53%), Gaps = 70/581 (12%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQ-AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
           +++ S+ LSYA+L+  Q   P T  A N+ IRA A+   P  A   +  + +     PD 
Sbjct: 47  SLASSNHLSYARLVLPQ--RPATLLAHNAFIRALARGPRPCLAFAAFRDLPLP----PDH 100

Query: 90  FTFTFTLK--------------ACERVKALNKCQELHGFVIRSGYER------------- 122
           ++  F ++                  V A  +    HG  +R G+               
Sbjct: 101 YSLNFLVRAATALVASAAEEKHVSAEVNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYA 160

Query: 123 ----------------C--VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
                           C  VV  T ++   AA G ++AAR +FD MP+RD V+W+++I+ 
Sbjct: 161 ALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAG 220

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
           Y       EAL L++ M      +   TLV +L++CA +G L+ G ++H      G   S
Sbjct: 221 YMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMS 280

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           + +G ALVDMY+KCG + +A  VF  M +R+V +W S + G  ++G G E +  FK+M  
Sbjct: 281 IKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEG 340

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
           AG  P+ ++F+ +L GCS  GLV+EG   F  M  +Y + P  +HYGC+VDLYGRAG+L+
Sbjct: 341 AGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEHYGCMVDLYGRAGRLD 399

Query: 345 KALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
            A+  IN   P +P   +W  LL + +IH +V++G+ A+  L+ +E+ +   +V L+ IY
Sbjct: 400 DAISFIN-DMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIY 458

Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
           A +++ +GV+R R ++K+ G+K  PGWS IE+  +VH+F V  + HP  + I   L E+ 
Sbjct: 459 AESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEMD 518

Query: 463 HRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR- 521
            R +  GYT +   V       E   E + + HSEKLA+AFGL   P+   +RIVKNLR 
Sbjct: 519 RRLRLQGYTANTREVLFDIEEEEK--EGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRV 576

Query: 522 -----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                      S  ++R++++RDR R+HHF+ G CSC DYW
Sbjct: 577 CMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 193/553 (34%), Positives = 297/553 (53%), Gaps = 21/553 (3%)

Query: 14  KARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAI 73
           + R+ + +    L+N Y    +  L  A+ +F+++ + +   WN++I    Q     + +
Sbjct: 17  RMRKKNYMSSNILINGYV--RAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGL 74

Query: 74  FYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRG 133
             +  M     S PD +T          +++++  Q++HG+ I+ G E  +VV+++L   
Sbjct: 75  SLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHM 133

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           Y  NG ++    V  +MP R+LV+WN++I    Q       L LY+ M+      +  T 
Sbjct: 134 YMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITF 193

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
           V +LSSC+ +     G  +H  A ++G    V V ++L+ MY+KCG L  A   FS    
Sbjct: 194 VTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERED 253

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
            D + W+SMI  YG HG+GDEAI  F  M        + + FL LL  CSH GL ++G+E
Sbjct: 254 EDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLE 313

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKI 370
            F MMV +Y  KPG+KHY C+VDL GRAG L++A E I  S P  +D V+W+TLL +C I
Sbjct: 314 LFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQA-EAIIRSMPIKTDIVIWKTLLSACNI 372

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS 430
           H+N E+ +   K ++Q++   +  YVLLA ++A  K    V+  RK ++   +K   G S
Sbjct: 373 HKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGIS 432

Query: 431 WIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEK 490
           W E   +VH+F + D+S   +  IY  L+E+    K  GY  D +  +V     E+  E 
Sbjct: 433 WFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTA--SVLHDMDEEEKES 490

Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYH 538
               HSEKLA+AF L   P+G  +RI+KNLR            S+  +R++ +RD  R+H
Sbjct: 491 DLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFH 550

Query: 539 HFRDGLCSCGDYW 551
           HF +G CSCGDYW
Sbjct: 551 HFINGKCSCGDYW 563



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 32/163 (19%)

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLS-------------------------------WNSM 262
           MY+K G+  SA  V+ RMRK++ +S                               WN+M
Sbjct: 1   MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAM 60

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I G       +E +S F++M   GF PD  T   +  G +    V  G +  H    +Y 
Sbjct: 61  IAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIG-QQIHGYTIKYG 119

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           L+  +     L  +Y R GKL+    VI +    + V W TL+
Sbjct: 120 LELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 162


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 194/536 (36%), Positives = 293/536 (54%), Gaps = 27/536 (5%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA     SL YA+ +F+ +       W++LI  F       QA   +  ML  
Sbjct: 161 GTALLDMYA--KCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ 218

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            L      +    L+AC  +  L   ++LH  + +SG    +    +L+  YA  G+I+ 
Sbjct: 219 GLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQ 278

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A ++FD M  +D VS+++++S Y Q     EA  ++++M+  +V  D  T+V L+ +C+H
Sbjct: 279 AIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSH 338

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL  G   H      G      + NAL+DMYAKCG +D +  VF+ M  RD++SWN+M
Sbjct: 339 LAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTM 398

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I GYG+HG G EA + F +M   GF PD +TF+ LL  CSH GLV EG  +FH+M   Y 
Sbjct: 399 IAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYG 458

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIA 380
           L P ++HY C+VDL  R G L++A E I  S P  +D  +W  LLG+C++++N+++G+  
Sbjct: 459 LTPRMEHYICMVDLLSRGGFLDEAYEFIQ-SMPLRADVRVWVALLGACRVYKNIDLGKKV 517

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + + +L     G++VLL+ IY+     +  A  R + K  G K +PG SWIEI   +H 
Sbjct: 518 SRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHA 577

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY----HS 496
           FV  D+SHP +  IYR+L+ I+   K +GY  D S V       +D  E+        HS
Sbjct: 578 FVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVL------QDLEEEEKEKALICHS 631

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHF 540
           EKLAIA+G+ +  +  ++ + KNLR            S+   R +IVRD  R+HHF
Sbjct: 632 EKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 143/294 (48%), Gaps = 18/294 (6%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P+ +TF F LKAC  +   +  + +H   I +G +  + VST L+  Y     +  A  +
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 147 FDNMPERDLVSWNSIISCYTQASF--HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           F  MP RDLV+WN++++ Y       H  A  L  +M+   +  +  TLV LL   A  G
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127

Query: 205 ALNMGIFLHRI---AC-------EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
           AL  G  +H     AC       +    + V +G AL+DMYAKCG+L  A  VF  M  R
Sbjct: 128 ALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR 187

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG---FHPDSITFLGLLCGCSHQGLVEEGV 311
           + ++W+++I G+ +  R  +A   FK ML  G     P SI     L  C+    +  G 
Sbjct: 188 NEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMG- 244

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           E  H ++++  +   +     L+ +Y +AG +++A+ + +  +  D V +  L+
Sbjct: 245 EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 298



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 11/192 (5%)

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           V  + +T    L +C+ +   + G  +HR A   G    ++V  AL+DMY KC  L  A 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF--KQMLMAGFHPDSITFLGLLCGCSH 303
            +F+ M  RD+++WN+M+ GY  HG    A++     QM M    P++ T + LL   + 
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 304 QGLVEEGVEYFHMMV---------SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           QG + +G       +         S+  L  G+     L+D+Y + G L  A  V +   
Sbjct: 126 QGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 185

Query: 355 PSDPVLWRTLLG 366
             + V W  L+G
Sbjct: 186 ARNEVTWSALIG 197


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/530 (36%), Positives = 294/530 (55%), Gaps = 19/530 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM--ASLSRPDTFTFTFT 95
           L+ A+ LF+++      +W++++ A  +   P  A+  Y  ML         + FT +  
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSA 168

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L A    +     +ELH  V+R G +   VV + L   YA  G ++ ARSVFD MP RD+
Sbjct: 169 LAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDV 228

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW +++  Y  A    E  +L+ RM    +  + FT   +L +CA   +  +G  +H  
Sbjct: 229 VSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGR 288

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             +    +S + G+ALV MY+K G++ +A  VF  M K D++SW +MI GY  +G+ DEA
Sbjct: 289 MAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEA 348

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F  +L +GF PD +TF+G+L  C+H GLV++G+  FH +  +Y ++    HY C++D
Sbjct: 349 LHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVID 408

Query: 336 LYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L  R+G  E+A ++INT  P  P   LW +LLG C+IH+NV +   A + L ++E  +  
Sbjct: 409 LLSRSGLFERAEDMINT-MPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPA 467

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            YV LA IYA     + V   R+ ++  GI   P  SWIE+G +VH F+V DKSHP A+ 
Sbjct: 468 TYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEE 527

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           IY  L+++  + +  GY  D   V       +   ++   YHSE+LA+AFG+  TP G+ 
Sbjct: 528 IYALLKKLYVKMREEGYVADTGFVLHDVEDEQK--QQDIGYHSERLAVAFGIIATPKGSP 585

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +++ KNLR            S    R++IVRD  R+HHF++G CSC DYW
Sbjct: 586 IKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/529 (35%), Positives = 296/529 (55%), Gaps = 20/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F+ +      +W  +I    +     +A+  +  +L + L RPD F     L+
Sbjct: 155 LRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGL-RPDGFVIVRVLR 213

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC R+  L   + +   +   G  R V V+T+L+  Y   G +E AR VFD M E+D+V 
Sbjct: 214 ACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVC 273

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W+++I  Y       EA++L+  MR  +V  D + +V  LSSCA +GAL +G +   +  
Sbjct: 274 WSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMN 333

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
              F+ +  +G +L+D YAKCG+++ A  V+  M+++D + +N++I G  ++G+   A  
Sbjct: 334 YEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFG 393

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM   G  P+  TF+GLLCGC+H GLV++G  YF+ M   +++ P I+HYGC+VDL 
Sbjct: 394 VFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLL 453

Query: 338 GRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            RAG L++A  +I      ++ ++W +LLG C++HR  ++ E  +K L++LE  ++G YV
Sbjct: 454 ARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYV 513

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+ IY+ ++  +   + R  +   G++  PG+SW+E+   VH+F+V D SHP +  IY 
Sbjct: 514 LLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYE 573

Query: 457 KLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           KLE +    K  GY  T +  L  V     E FL      HSEKLA+AF L +T     +
Sbjct: 574 KLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFL----GCHSEKLAVAFALISTGAKYVI 629

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R+VKNLR            S    R++++RD  R+H F DG CSC DYW
Sbjct: 630 RVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 177/355 (49%), Gaps = 23/355 (6%)

Query: 31  AISVSSSLSYAQLLFNQI-QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
            I+ S++  Y  L+F++   N  T  +N++IR          A+  Y  M  A++  PD+
Sbjct: 46  TINFSNNAQYPILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIV-PDS 104

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           FTF+F LKAC R+   +    +H  V ++G++  V V TN++  Y+  G +  A  VFD+
Sbjct: 105 FTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDD 164

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           M  +++VSW  +I    +     EA+ L+  +    +  DGF +V +L +CA +G L  G
Sbjct: 165 MVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESG 224

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
            ++ R   E G   +V+V  +LVDMY KCG+++ A  VF  M ++D++ W++MI GY  +
Sbjct: 225 RWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASN 284

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G   EAI  F +M      PD    +G L  C+  G +E G           N   G+ +
Sbjct: 285 GLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELG-----------NWAKGLMN 333

Query: 330 Y----------GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNV 374
           Y            L+D Y + G +E+AL V       D V++  ++    ++  V
Sbjct: 334 YEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQV 388


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 192/537 (35%), Positives = 295/537 (54%), Gaps = 27/537 (5%)

Query: 32  ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ-SLSPLQAIFYYNHMLMASLSRPDTF 90
           + +  S+  A+ +F ++      +W +LI  + Q       A+     ML  S+  P+  
Sbjct: 297 LQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESI-EPNHL 355

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T++  LKAC  +   +  +++H  V+++      VV   L+  YA +G +E AR  FD +
Sbjct: 356 TYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQL 415

Query: 151 PERDLVSWNSII--SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            ER+L+S +S I  +  + AS+         ++   DVG+  FT   LLS+ A VG    
Sbjct: 416 YERNLLSTSSDIGETGRSNASWS-------SQIESMDVGVSTFTFASLLSAAATVGLPTK 468

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-RDVLSWNSMIVGYG 267
           G  LH ++ + GF     + N+LV MY++CG LD A   F  M    +V+SW S+I    
Sbjct: 469 GQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALA 528

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            HG  + A+S F  M+++G  P+ +T++ +L  CSH GLV+EG EYF  M   + L P +
Sbjct: 529 KHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRM 588

Query: 328 KHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           +HY C+VDL  R+G +++ALE IN     +D ++W+TLLG+C+ + N+EIGEIA ++++ 
Sbjct: 589 EHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVID 648

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
           LE      YVLL+ +YA     + VAR R L++   +    G SW+ +GN +H+F   D 
Sbjct: 649 LEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDT 708

Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLA 506
           SHP A  IY KL  ++   K IGY  D S+V      S+   E+    HSEK+A+AFGL 
Sbjct: 709 SHPRAQEIYAKLAVLIREIKDIGYVPDTSIVL--HDMSDKLKEQCLLQHSEKIAVAFGLI 766

Query: 507 TTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           TT     +RI KNLR            S +  R++I+RD  R+H  +DG CSCG+YW
Sbjct: 767 TTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGKCSCGEYW 823



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 157/335 (46%), Gaps = 19/335 (5%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ-ELHG 113
           +W ++     ++ +  +A+     ML + L RP+ FT      AC   +        + G
Sbjct: 113 SWTAMAFCLTRNGAEQEALVLLGEMLESGL-RPNAFTLCAAAHACFPGELFRSSGGTVLG 171

Query: 114 FVIRSGYERC-VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
           F I++G+    V V   L+  +A NG + AAR VF+ + ER +V W  +I+ Y Q     
Sbjct: 172 FAIKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAG 231

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           +A++L+  M  +    DG+T+  ++S+CA  G+  +G  LH +   +G V    V   LV
Sbjct: 232 KAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLV 291

Query: 233 DMYAKCGNLDSAFC---VFSRMRKRDVLSWNSMIVGY-GVHGRGDEAISFFKQMLMAGFH 288
           DMY K     S  C   VF RM   +V+SW ++I GY    G+ + A+    +ML     
Sbjct: 292 DMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIE 351

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           P+ +T+  LL  C++    + G +  H  V + ++         LV +Y  +G +E+A +
Sbjct: 352 PNHLTYSSLLKACANLSDQDSGRQ-IHARVMKTSIGNVNVVGNALVSMYAESGCMEEARK 410

Query: 349 VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
                   D +  R LL +     + +IGE    N
Sbjct: 411 AF------DQLYERNLLST-----SSDIGETGRSN 434



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 116/228 (50%), Gaps = 7/228 (3%)

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           +V+ +L+  Y+  G + AAR VFD M   RDLVSW ++  C T+     EAL L   M  
Sbjct: 80  LVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEMLE 139

Query: 184 EDVGLDGFTLVCLLSSCAHVGAL--NMGIFLHRIACEMGFVES-VYVGNALVDMYAKCGN 240
             +  + FTL C  +     G L  + G  +   A + GF  + V VG AL+DM+A+ G+
Sbjct: 140 SGLRPNAFTL-CAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARNGD 198

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           L +A  VF+ + +R V+ W  MI  Y   G   +A+  F  ML  GF PD  T   ++  
Sbjct: 199 LVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSA 258

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           C+ QG    G +  H +V R  L         LVD+Y +  ++E+++E
Sbjct: 259 CAEQGSAGLG-QQLHSLVLRLGLVSDTCVSCGLVDMYTKL-QMEQSME 304


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/535 (35%), Positives = 293/535 (54%), Gaps = 25/535 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF+++      AW++L+  + +   P  A+  Y  M     +  D     FT  
Sbjct: 111 LPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGN--DGADNEFTAS 168

Query: 98  ACERVKALNKC----QELHGFVIRSGYERC---VVVSTNLMRGYAANGVIEAARSVFDNM 150
           +     A  +C    +ELH  V+R G +      V+ + L   YA  G ++ AR VFD M
Sbjct: 169 SALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRM 228

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           P RD VSW +++  Y       E  +L+  M R   V  + FT   +L +CA     + G
Sbjct: 229 PVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFG 288

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H    + G  +S +  +AL+ MY+KCG++ SA  VF  M K D++SW ++I GY  +
Sbjct: 289 RQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQN 348

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G+ +EA+ +F   L +G  PD +TF+G+L  C+H GLV++G+E FH +  +Y ++    H
Sbjct: 349 GQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADH 408

Query: 330 YGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
           Y C++DL  R+G+ E+A ++I N +   +  LW +LLG C+IH+NV +   A + L ++E
Sbjct: 409 YACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIE 468

Query: 389 AASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSH 448
             +   YV LA IYA     + V   R++++S GI   P  SWIE+G +VH F+V DKSH
Sbjct: 469 PENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSH 528

Query: 449 PDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
           P AD IY  L+++  +    GY  D   V       +   E+   YHSE+LA+AFG+  T
Sbjct: 529 PKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQK--EQDIGYHSERLAVAFGIIAT 586

Query: 509 PDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           P+G+ +++ KNLR            S    RD+IVRD  R+HHF+DG+CSC DYW
Sbjct: 587 PEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL  Y  S    +  A  +F  +  P   +W ++I  +AQ+  P +A+ Y++ M + S  
Sbjct: 310 LLRMY--SKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFD-MFLRSGI 366

Query: 86  RPDTFTFTFTLKACERVKALNKCQEL 111
           +PD  TF   L AC     ++K  E+
Sbjct: 367 KPDHVTFVGVLSACAHAGLVDKGLEI 392


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 193/525 (36%), Positives = 288/525 (54%), Gaps = 20/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+L+F  +++    +WN++I   AQ+    +A   +  ML      P   T    L AC 
Sbjct: 300 ARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEG-EVPTRVTMMGVLLACA 358

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +  L +   +H  + +   +  V V  +L+  Y+    ++ A S+F+N+ E+  V+WN+
Sbjct: 359 NLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNA 417

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I  Y Q     EAL L+  M+ + + LD FTLV ++++ A         ++H +A    
Sbjct: 418 MILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRAC 477

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
              +V+V  ALVDMYAKCG + +A  +F  M++R V++WN+MI GYG HG G E +  F 
Sbjct: 478 MDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFN 537

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M      P+ ITFL ++  CSH G VEEG+  F  M   Y L+P + HY  +VDL GRA
Sbjct: 538 EMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRA 597

Query: 341 GKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G+L+ A   I    P  P   +   +LG+CKIH+NVE+GE A + L +L+    G +VLL
Sbjct: 598 GQLDDAWNFIQ-EMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLL 656

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           A IYA     + VA+ R  ++  G+  TPG SW+E+ N++H F     +HP++  IY  L
Sbjct: 657 ANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFL 716

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           E +    K  GY  D   +       ED  ++  + HSE+LAIAFGL  T  GT+L I K
Sbjct: 717 ETLGDEIKAAGYVPDPDSIH---DVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRK 773

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S+   R++IVRD  R+HHF++G CSCGDYW
Sbjct: 774 NLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 176/347 (50%), Gaps = 6/347 (1%)

Query: 22  HGEWLLNSYAISVS---SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNH 78
           + E L  +  IS+     S S A  +F  ++      ++ +++ +A++ S   A+ ++  
Sbjct: 76  YNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLR 135

Query: 79  MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
           M M    R     +   L+ C     L K +E+HG +I +G+E  + V T +M  YA   
Sbjct: 136 M-MCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCR 194

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
            I+ A  +F+ M  +DLVSW ++++ Y Q      AL+L  +M+      D  TLV +L 
Sbjct: 195 QIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILP 254

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           + A + AL +G  +H  A   GF   V V NAL+DMY KCG+   A  VF  MR + V+S
Sbjct: 255 AVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVS 314

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WN+MI G   +G  +EA + F +ML  G  P  +T +G+L  C++ G +E G  + H ++
Sbjct: 315 WNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG-WFVHKLL 373

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +  L   +     L+ +Y +  +++ A  + N    ++ V W  ++
Sbjct: 374 DKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMI 419



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 120/255 (47%), Gaps = 1/255 (0%)

Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
           F+I++G+    +  T ++  +   G    A  VF+++  +  V ++ ++  Y + S   +
Sbjct: 69  FIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGD 128

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           AL  + RM  ++V L      CLL  C     L  G  +H +    GF  +++V  A++ 
Sbjct: 129 ALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMS 188

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           +YAKC  +D+A+ +F RM+ +D++SW +++ GY  +G    A+    QM  AG  PDS+T
Sbjct: 189 LYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVT 248

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
            + +L   +    +  G    H    R   +  +     L+D+Y + G    A  V    
Sbjct: 249 LVSILPAVADMKALRIG-RSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGM 307

Query: 354 SPSDPVLWRTLLGSC 368
                V W T++  C
Sbjct: 308 RSKTVVSWNTMIDGC 322


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 195/568 (34%), Positives = 308/568 (54%), Gaps = 28/568 (4%)

Query: 7   ARYVGLNKARQAH------EIHGEWLLNSYAISV---SSSLSYAQLLFNQIQNPQTQAWN 57
           A+   L  AR+ H         G+  L++  I +     S+  A+ +F++++     +W 
Sbjct: 62  AQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWT 121

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
           SLI  +AQ+  P +AI     ML     +P+ FTF   LKA          +++H   ++
Sbjct: 122 SLIAGYAQNDMPEEAIGLLPGMLKGRF-KPNGFTFASLLKAAGAHADSGIGRQIHALAVK 180

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177
             +   V V + L+  YA  G+++ A +VFD +  ++ VSWN++IS + +      AL  
Sbjct: 181 CDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMT 240

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
           +  M         FT   + SS A +GAL  G ++H    +     + + GN L+DMYAK
Sbjct: 241 FAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAK 300

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
            G++  A  VF R+  +D+++WN+M+  +  +G G EA+S F++M  +G + + +TFL +
Sbjct: 301 SGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCI 360

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           L  CSH GLV+EG  YF MM   Y+L+P I H+  +V L GRAG L  AL  I    P +
Sbjct: 361 LTACSHGGLVKEGKRYFEMM-KEYDLEPEIDHFVTVVALLGRAGLLNFALVFI-FKMPIE 418

Query: 358 PV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415
           P   +W  LL +C++H+N ++G+ A  ++ +L+   +G  VLL  IYA T   +  AR R
Sbjct: 419 PTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVR 478

Query: 416 KLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES 475
           +++K+ G+K  P  SW+E+ N VH FV +D +HP A+ IY+   +I  + +  GY  D  
Sbjct: 479 RIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMD 538

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SI 523
            V +     E   E +  YHSEKLA+AF L   P G ++RI+KN+R            S 
Sbjct: 539 YVLLRVDDQER--EANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISK 596

Query: 524 AYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + R+++VRD  R+HHF +G CSC DYW
Sbjct: 597 VFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 141/280 (50%), Gaps = 3/280 (1%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P    +   + AC + K L   +++H  +  S +     +  +L+  Y   G +  AR V
Sbjct: 49  PTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKV 108

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD M  +D+VSW S+I+ Y Q     EA+ L   M       +GFT   LL +       
Sbjct: 109 FDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADS 168

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            +G  +H +A +  + E VYVG+AL+DMYA+CG +D A  VF ++  ++ +SWN++I G+
Sbjct: 169 GIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV-EYFHMMVSRYNLKP 325
              G G+ A+  F +ML  GF     T+  +    +  G +E+G   + HM+ SR  +  
Sbjct: 229 ARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTA 288

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
              +   L+D+Y ++G +  A +V +     D V W T+L
Sbjct: 289 FAGN--TLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTML 326


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 193/553 (34%), Positives = 297/553 (53%), Gaps = 21/553 (3%)

Query: 14  KARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAI 73
           + R+ + +    L+N Y    +  L  A+ +F+++ + +   WN++I    Q     + +
Sbjct: 104 RMRKKNYMSSNILINGYV--RAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGL 161

Query: 74  FYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRG 133
             +  M     S PD +T          +++++  Q++HG+ I+ G E  +VV+++L   
Sbjct: 162 SLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHM 220

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           Y  NG ++    V  +MP R+LV+WN++I    Q       L LY+ M+      +  T 
Sbjct: 221 YMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITF 280

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
           V +LSSC+ +     G  +H  A ++G    V V ++L+ MY+KCG L  A   FS    
Sbjct: 281 VTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERED 340

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
            D + W+SMI  YG HG+GDEAI  F  M        + + FL LL  CSH GL ++G+E
Sbjct: 341 EDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLE 400

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKI 370
            F MMV +Y  KPG+KHY C+VDL GRAG L++A E I  S P  +D V+W+TLL +C I
Sbjct: 401 LFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQA-EAIIRSMPIKTDIVIWKTLLSACNI 459

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS 430
           H+N E+ +   K ++Q++   +  YVLLA ++A  K    V+  RK ++   +K   G S
Sbjct: 460 HKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGIS 519

Query: 431 WIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEK 490
           W E   +VH+F + D+S   +  IY  L+E+    K  GY  D +  +V     E+  E 
Sbjct: 520 WFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTA--SVLHDMDEEEKES 577

Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYH 538
               HSEKLA+AF L   P+G  +RI+KNLR            S+  +R++ +RD  R+H
Sbjct: 578 DLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFH 637

Query: 539 HFRDGLCSCGDYW 551
           HF +G CSCGDYW
Sbjct: 638 HFINGKCSCGDYW 650



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 152/345 (44%), Gaps = 48/345 (13%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA----------- 136
           +T  FT  +++C   ++L   ++LH  ++ SG+     +  +LM  Y+            
Sbjct: 43  NTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVY 102

Query: 137 ---------------NGVIEA-----ARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
                          NG + A     AR VFD MP+R L +WN++I+   Q  F+ E L 
Sbjct: 103 GRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLS 162

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           L+  M       D +TL  + S  A + ++++G  +H    + G    + V ++L  MY 
Sbjct: 163 LFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYM 222

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           + G L     V   M  R++++WN++I+G   +G  +  +  +K M ++G  P+ ITF+ 
Sbjct: 223 RNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVT 282

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
           +L  CS   +  +G +  H    +      +     L+ +Y + G L  A +  +     
Sbjct: 283 VLSSCSDLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDE 341

Query: 357 DPVLWRTLLGSCKIH----------------RNVEIGEIAMKNLV 385
           D V+W +++ +   H                 N+EI E+A  NL+
Sbjct: 342 DEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLL 386



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 90/221 (40%), Gaps = 36/221 (16%)

Query: 180 RMRFEDVGLDGFTLVCLLS----SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           R  F+   L+ FT   L +    SC    +L  G  LH +    GF    ++ N L+ MY
Sbjct: 30  REAFQRFRLNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMY 89

Query: 236 AKCGNLDSAFCVFSRMRKRDVLS-------------------------------WNSMIV 264
           +K G+  SA  V+ RMRK++ +S                               WN+MI 
Sbjct: 90  SKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIA 149

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           G       +E +S F++M   GF PD  T   +  G +    V  G +  H    +Y L+
Sbjct: 150 GLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIG-QQIHGYTIKYGLE 208

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             +     L  +Y R GKL+    VI +    + V W TL+
Sbjct: 209 LDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 249


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 187/529 (35%), Positives = 301/529 (56%), Gaps = 19/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A+ LF  +      +WN+++  ++      +AI  +N M    L   D +T    + 
Sbjct: 173 MGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGL-LVDFYTIMSLIP 231

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A   V  L     +HGF+IR+GYE    + T LM  Y ++  ++ A  VF  M  +D+ +
Sbjct: 232 ASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAA 291

Query: 158 WNSIISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           W  +++ ++       A+K + +M   +++ LD   L+ +LSSC+H GAL  G  +H +A
Sbjct: 292 WTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALA 351

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            +  F  +++VG+A++DMYA CGNL+ A   F  M ++DV+ WN+MI G G++G G +AI
Sbjct: 352 IKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAI 411

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F QM  +G  PD  TF+ +L  CSH G+V EG++ F+ MV   +  P ++HY C++D+
Sbjct: 412 DLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDI 471

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG+L+ A   IN + P  P   ++ TLLG+C+IH N+++G    + + ++E   AG 
Sbjct: 472 LGRAGQLDAAYSFIN-NMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGY 530

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ +YA   + EGV  TR  ++S  +K  PG+S IEI  +++ F+  +K HP    I
Sbjct: 531 YVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKI 590

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
              L+ ++ + K  GY  + +++      S+D  +    +HSEK+AIAFGL  T  GT +
Sbjct: 591 EGILKGLILKIKKAGYVPNTNVLL--QDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTII 648

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI KNLR            S  + R L+++D  R+H F+DG+CSC DYW
Sbjct: 649 RITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 186/383 (48%), Gaps = 10/383 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N+Y       L+ A+ +F+        +W  LI   A++   ++AI  +  M M +  
Sbjct: 62  LMNAYV--YCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNF- 118

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +P+  T +  L A   +  +   + +H F +R G+E  V V T L+  Y+  G +  AR 
Sbjct: 119 KPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQ 178

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F++M ER++VSWN+I+S Y+   F  EA+ L+  MR + + +D +T++ L+ +   VG 
Sbjct: 179 LFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGC 238

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L +G  +H      G+    ++  AL+D+Y     +D A  VFS M  +DV +W  M+ G
Sbjct: 239 LQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTG 298

Query: 266 YGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           +      D AI  F +ML +     DSI  +G+L  CSH G +++G    H +  +    
Sbjct: 299 FSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQG-RRVHALAIKTCFA 357

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
             I     ++D+Y   G LE A          D V W  ++    ++     G  A+   
Sbjct: 358 NNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMN---GYGTDAIDLF 414

Query: 385 VQLEAA--SAGDYVLLATIYACT 405
           +Q++ +     +   ++ +YAC+
Sbjct: 415 LQMKGSGLDPDESTFVSVLYACS 437



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 150/326 (46%), Gaps = 3/326 (0%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
            ++K L   Q++H  +I SG      +S +LM  Y   G++  A+ +F + P +++VSW 
Sbjct: 32  RKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWT 91

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
            +IS   +    +EA+ ++  M   +   +  T+  +L + A++G + +   +H      
Sbjct: 92  ILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRG 151

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           GF  +V+V  ALVDMY+K G +  A  +F  M +R+V+SWN+++ GY  HG  +EAI  F
Sbjct: 152 GFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLF 211

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
             M   G   D  T + L+      G ++ G    H  + R   +        L+D+Y  
Sbjct: 212 NLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTG-IHGFIIRTGYENDKHIKTALMDIYVS 270

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
              ++ A  V +     D   W  +L      R+ +        ++ ++       VL+ 
Sbjct: 271 HNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMG 330

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKT 425
            + +C+    G  +  + + +  IKT
Sbjct: 331 ILSSCS--HSGALQQGRRVHALAIKT 354


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 195/539 (36%), Positives = 294/539 (54%), Gaps = 36/539 (6%)

Query: 44  LFNQIQNPQTQ----AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           LF ++Q  + +     W++ I  +AQ     +A+     ML + + +P+  T    L  C
Sbjct: 317 LFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI-KPNEVTLISVLSGC 375

Query: 100 ERVKALNKCQELHGFVIR-------SGYERCVVVSTNLMRGYAANGVIEAARSVFDNM-- 150
             V AL   +E+H + I+       +G+    +V   L+  YA    ++ AR++FD++  
Sbjct: 376 ASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSP 435

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNM 208
            ERD+V+W  +I  Y+Q     +AL+L   M  ED     + FT+ C L +CA + AL +
Sbjct: 436 KERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRI 495

Query: 209 GIFLHRIAC-EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           G  +H  A         ++V N L+DMYAKCG++  A  VF  M  ++ ++W S++ GYG
Sbjct: 496 GKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYG 555

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           +HG G+EA+  F +M   GF  D +T L +L  CSH G++++G+EYF+ M + + + PG 
Sbjct: 556 MHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGP 615

Query: 328 KHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           +HY CLVDL GRAG+L  AL +I        PV+W   L  C+IH  VE+GE A + + +
Sbjct: 616 EHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITE 675

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
           L +   G Y LL+ +YA     + V R R L++  G+K  PG SW+E       F V DK
Sbjct: 676 LASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDK 735

Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           +HP A  IY+ L + M R K IGY  +   +L  V     +D L +    HSEKLA+A+G
Sbjct: 736 THPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFE----HSEKLALAYG 791

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + TTP G ++RI KNLR            S     D+I+RD  R+HHF++G CSC  YW
Sbjct: 792 ILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 192/396 (48%), Gaps = 57/396 (14%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQA----WNSLIRAFAQSLSPLQAIFYYNHMLM 81
           L+++Y ISV   LS+A  L  +   P + A    WNSLIR++  +    + ++ +   LM
Sbjct: 65  LISTY-ISVGC-LSHAVSLLRRF--PPSDAGVYHWNSLIRSYGDNGCANKCLYLFG--LM 118

Query: 82  ASLS-RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
            SLS  PD +TF F  KAC  + ++   +  H   + +G+   V V   L+  Y+    +
Sbjct: 119 HSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSL 178

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSS 199
             AR VFD M   D+VSWNSII  Y +      AL+++ RM  E     D  TLV +L  
Sbjct: 179 SDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPP 238

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           CA +G  ++G  LH  A     +++++VGN LVDMYAKCG +D A  VFS M  +DV+SW
Sbjct: 239 CASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSW 298

Query: 260 NSMIVGYGVHGRGDEAISFF-----------------------------------KQMLM 284
           N+M+ GY   GR ++A+  F                                   +QML 
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG-------CLVDLY 337
           +G  P+ +T + +L GC+  G +  G E  H    +Y +      +G        L+D+Y
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKE-IHCYAIKYPIDLRKNGHGDENMVINQLIDMY 417

Query: 338 GRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIH 371
            +  K++ A  + ++ SP   D V W  ++G    H
Sbjct: 418 AKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQH 453



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 136/288 (47%), Gaps = 12/288 (4%)

Query: 83  SLSRPD-TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
           S S P+ T  F    K   +VK ++  Q+L  F I +     + ++++L+  Y + G + 
Sbjct: 24  STSAPEITPPFIHKCKTISQVKLIH--QKLLSFGILT-----LNLTSHLISTYISVGCLS 76

Query: 142 AARSVFDNMPERD--LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
            A S+    P  D  +  WNS+I  Y       + L L+  M       D +T   +  +
Sbjct: 77  HAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKA 136

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           C  + ++  G   H ++   GF+ +V+VGNALV MY++C +L  A  VF  M   DV+SW
Sbjct: 137 CGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSW 196

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMA-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           NS+I  Y   G+   A+  F +M    G  PD+IT + +L  C+  G    G +  H   
Sbjct: 197 NSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQ-LHCFA 255

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
               +   +    CLVD+Y + G +++A  V +  S  D V W  ++ 
Sbjct: 256 VTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVA 303


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 201/581 (34%), Positives = 311/581 (53%), Gaps = 70/581 (12%)

Query: 31   AISVSSSLSYAQLLFNQIQNPQTQ-AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
            +++ S+ LSYA+L+  Q   P T  A N+ IRA A+   P  A   +  + +     PD 
Sbjct: 1252 SLASSNHLSYARLVLPQ--RPATLLAHNAFIRALARGPRPCLAFAAFRDLPLP----PDH 1305

Query: 90   FTFTFTLK--------------ACERVKALNKCQELHGFVIRSGYER------------- 122
            ++  F ++                  V A  +    HG  +R G+               
Sbjct: 1306 YSLNFLVRAATALVASAAEEKHVSAEVNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYA 1365

Query: 123  ----------------C--VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
                            C  VV  T ++   AA G ++AAR +FD MP+RD V+W+++I+ 
Sbjct: 1366 ALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAG 1425

Query: 165  YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
            Y       EAL L++ M      +   TLV +L++CA +G L+ G ++H      G   S
Sbjct: 1426 YMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMS 1485

Query: 225  VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
            + +G ALVDMY+KCG + +A  VF  M +R+V +W S + G  ++G G E +  FK+M  
Sbjct: 1486 IKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEG 1545

Query: 285  AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            AG  P+ ++F+ +L GCS  GLV+EG   F  M  +Y + P  +HYGC+VDLYGRAG+L+
Sbjct: 1546 AGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEHYGCMVDLYGRAGRLD 1604

Query: 345  KALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
             A+  IN   P +P   +W  LL + +IH +V++G+ A+  L+ +E+ +   +V L+ IY
Sbjct: 1605 DAISFIN-DMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIY 1663

Query: 403  ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
            A +++ +GV+R R ++K+ G+K  PGWS IE+  +VH+F V  + HP  + I   L E+ 
Sbjct: 1664 AESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEMD 1723

Query: 463  HRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR- 521
             R +  GYT +   V       E   E + + HSEKLA+AFGL   P+   +RIVKNLR 
Sbjct: 1724 RRLRLQGYTANTREVLFDIEEEEK--EGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRV 1781

Query: 522  -----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                       S  ++R++++RDR R+HHF+ G CSC DYW
Sbjct: 1782 CMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 198/552 (35%), Positives = 288/552 (52%), Gaps = 56/552 (10%)

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQE 110
           P    WN L+    +S     A+     M    L RPD    +  L A   V  ++  Q+
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQ 178

Query: 111 LHGFVIRSG--YERCVVVS-----------------------------TNLMRGYAANGV 139
           LHG+ +++G   + CVV +                               L+ G + N  
Sbjct: 179 LHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQ 238

Query: 140 IEAARSVFDNMPER----DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
           +  A  +F    +R    ++VSW SI++C  Q    LEA++ +  M+ +    +  T+ C
Sbjct: 239 VCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPC 298

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L + A+V AL  G   H  A   GF+  VYV +ALVDMYAKCG +  A  +F  M  R+
Sbjct: 299 VLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRN 358

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           V+SWN+MI GY ++G    A+  F  ML     PD +TF  LL  C+  GL EEG  YF 
Sbjct: 359 VVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFK 418

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRN 373
            M + Y + P ++HY C+V L GRAGKL++A ++I +  P +P   +W +LLGSC++H N
Sbjct: 419 EMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLI-SDMPFEPDAYIWGSLLGSCRVHGN 477

Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIE 433
           V++ E+A + L  LE  +AG+YVLL+ IYA  K  + V R R+++K  G+K   G SWIE
Sbjct: 478 VDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIE 537

Query: 434 IGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKS 491
           I N+VH  +  D SHP    I  K+ ++  + + +G+      V   V     +D L   
Sbjct: 538 IKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDIL--- 594

Query: 492 SAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHH 539
            A HSEKLA+A GL +T  GT+LR++KNLR            S    R++ VRD  R+HH
Sbjct: 595 -AVHSEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHH 653

Query: 540 FRDGLCSCGDYW 551
           F  G CSCGD+W
Sbjct: 654 FSGGKCSCGDFW 665



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 136/354 (38%), Gaps = 78/354 (22%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           PD        K+C     L   + LH     SG  R   V+++L+  Y   G    AR++
Sbjct: 18  PDPHLLPTAFKSC---PTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARAL 74

Query: 147 FDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL---------------- 188
           FD MP  +R +V W+++++ +        A +L E MR  D G+                
Sbjct: 75  FDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMR-RDGGVEPNVITWNGLVSGLNR 133

Query: 189 ----------------------DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
                                 D   + C LS+   VG +++G  LH  A + G      
Sbjct: 134 SGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADAC 193

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           V  AL+DMY KCG       VF      DV S N++I G   + +  EA+  FK+ +  G
Sbjct: 194 VVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRG 253

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR-------------------------- 320
              + +++  ++  C   G   E VE+F  M ++                          
Sbjct: 254 VELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGR 313

Query: 321 ----YNLKPGIKH----YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
               + L+ G  H       LVD+Y + G+++ A  + +T    + V W  ++G
Sbjct: 314 SAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIG 367



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 91/240 (37%), Gaps = 43/240 (17%)

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           L+  +R      D   L     SC     L +   LH +A   G     +V ++L+  Y 
Sbjct: 7   LHHFLRHVSFPPDPHLLPTAFKSCP---TLPLARALHAVAEVSGLARDPFVASSLLHAYL 63

Query: 237 KCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLM-AGFHPDSIT 293
           + G   +A  +F  M +  R V+ W++++  +   G  + A    ++M    G  P+ IT
Sbjct: 64  RLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVIT 123

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMM-------------------------------VSRYN 322
           + GL+ G +  G   + V     M                               +  Y 
Sbjct: 124 WNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYA 183

Query: 323 LKPGIKHYGC----LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
           +K G +   C    L+D+YG+ G+  + + V + SS  D      L+    + RN ++ E
Sbjct: 184 VKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAG--LSRNAQVCE 241


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 194/525 (36%), Positives = 293/525 (55%), Gaps = 20/525 (3%)

Query: 43  LLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
           LL     +P +  + SL RA A+   P  A+ +Y  +L A+L    +F FT   KAC  +
Sbjct: 63  LLAASHPSPDSFLFCSLTRAAARRGLPAAALAFYRRLLAAALPF-SSFAFTSVAKACADL 121

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
            AL     +H   +  G+     V T L+  Y+  G ++ AR +FD + +R +V+WN++I
Sbjct: 122 SALRAGMGVHAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMI 181

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           S Y Q      A+++Y  MR      D  T V  LS+CA  GAL++G  + R+       
Sbjct: 182 SGYEQNGLAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERME 241

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
            +V +G ALV+MYA+CG ++ A   F  +++R+V++W SMI GYG+HG G EA+  F  M
Sbjct: 242 MNVVLGAALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLM 301

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
              G  P+ +TF+ +L  C+H GLV +G + F  M S Y L P  +HY  +VD+YGRAG 
Sbjct: 302 RQQGPPPNDVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGL 361

Query: 343 LEKALEVINTSSPSD--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
           L+ A++ I+ S P +  P +W  +LG+CK+H+N  +G    + L+ LE  +    VLL+ 
Sbjct: 362 LDDAMQFIHDSIPGEPGPEVWTAMLGACKMHKNFSLGVEVAERLIALEPENPSHRVLLSN 421

Query: 401 IYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE 460
           IYA +     V + R  +    +K   G+S IEIG   H F + +KSHP    IY+ LE+
Sbjct: 422 IYALSGKMNHVEKVRNTMIKRRLKKPIGYSLIEIGGVAHVFRMGEKSHPKTPEIYQYLEK 481

Query: 461 IMHRAKFIGYTKD-ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS-LRIVK 518
           ++HR    GY  + +S++        +F  +   YH EKLA+AFGL  T   T+ +RI+K
Sbjct: 482 LIHRITDAGYMPETDSVLHELEEEEREFALR---YHGEKLAVAFGLMMTSGCTAPIRIIK 538

Query: 519 NLR-------SIAY-----SRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR       +I Y     +R++IVRD  R+HHF+ G CSC +YW
Sbjct: 539 NLRICGDCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 583



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 144/302 (47%), Gaps = 4/302 (1%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L   ++ H  ++ SG+   + ++T L     A G    A  +  + P  D   + S+   
Sbjct: 23  LGPLKQAHARLVVSGHAHSLPLTTKLATLAVAAGAASYAGLLAASHPSPDSFLFCSLTRA 82

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
             +      AL  Y R+    +    F    +  +CA + AL  G+ +H  A  +GF   
Sbjct: 83  AARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKACADLSALRAGMGVHAHAVLLGFGSD 142

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
            +V  ALV +Y+KCG LD A  +F  +R R V++WN+MI GY  +G    AI  +++M +
Sbjct: 143 RFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQNGLAGRAIEVYREMRV 202

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
           AG  PDS TF+  L  C+  G ++ G E   ++VS   ++  +     LV++Y R G + 
Sbjct: 203 AGEAPDSATFVATLSACAQAGALDLGHEVERLIVSE-RMEMNVVLGAALVNMYARCGLVN 261

Query: 345 KALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE-IAMKNLVQLEAASAGDYVLLATIYA 403
           KA E  +     + V W +++    +H +   GE + + +L++ +     D   +A + A
Sbjct: 262 KAREWFDMLQERNVVTWTSMIAGYGMHGHG--GEAVKLFDLMRQQGPPPNDVTFVAVLSA 319

Query: 404 CT 405
           C 
Sbjct: 320 CA 321


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 182/509 (35%), Positives = 284/509 (55%), Gaps = 16/509 (3%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           +NS++ A  +S    +A+     M+   +   D+ T+   +  C +++ L    ++H  +
Sbjct: 195 YNSVLNALVESGRLGEAVEVLGRMVDEGVVW-DSVTYVSVMGLCGQIRDLGLGLQVHAQL 253

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
           ++ G    V V + L+  +   G + +AR VFD +  R++V W S+++ Y Q     E L
Sbjct: 254 LKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETL 313

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
            L   M  E    + FT   LL++ A + AL  G  LH    ++G    V VGNAL++MY
Sbjct: 314 NLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMY 373

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           +KCG +DS++ VF  MR RD+++WN+MI GY  HG G +A+  F+ ML AG  P+ +TF+
Sbjct: 374 SKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFV 433

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
           G+L  C+H  LV EG  Y + ++  + ++PG++HY C+V +  RAG LE+A   + T+  
Sbjct: 434 GVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQV 493

Query: 356 S-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
             D V WR LL +C IHRN  +G    + ++Q++    G Y LL+ +YA  +  + V   
Sbjct: 494 KWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAKARSWDSVTMI 553

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
           RK+++   +K  PG SWIEI N VH F  D  +HP+   IY K++ ++   K +GY  + 
Sbjct: 554 RKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKVQLLLEMIKQLGYVPN- 612

Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
            + AV     ++  E    YHSEKLAIA+GL   P    +R++KNLR            S
Sbjct: 613 -IEAVLHDVEDEQKESYLNYHSEKLAIAYGLMKIPSPAPIRVIKNLRICEDCHTAVKLIS 671

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              +R +IVRD  R+HHFRDG C+C D+W
Sbjct: 672 KVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 170/357 (47%), Gaps = 13/357 (3%)

Query: 16  RQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFY 75
           R+ + I    L+N Y     S L  A+ LF+++      ++N L+  +  S   L+ +  
Sbjct: 51  REFNIIQLNSLINLYV--KCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKL 108

Query: 76  YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
           + +M+ +SL +P+ + FT  L AC     + +  + HGF+ + G      V ++L+  Y+
Sbjct: 109 FKNMV-SSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYS 167

Query: 136 -------ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188
                  A  V+E+     DN  + D   +NS+++   ++    EA+++  RM  E V  
Sbjct: 168 KCFHVDLALQVLESEHGNIDN--DNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVW 225

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
           D  T V ++  C  +  L +G+ +H    + G    V+VG+ LVDM+ KCG++ SA  VF
Sbjct: 226 DSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVF 285

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
             ++ R+V+ W S++  Y  +G  +E ++    M   G   +  TF  LL   +    + 
Sbjct: 286 DGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALR 345

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            G +  H  V +  +K  +     L+++Y + G ++ + +V       D + W  ++
Sbjct: 346 HG-DLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMI 401



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 10/146 (6%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N+L+++Y KC  L  A  +F  M  R V+S+N ++ GY   G   E +  FK M+ + + 
Sbjct: 59  NSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQ 118

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY--GCLVDLYGRAGKLEKA 346
           P+   F  +L  C+H G V EG++  H  + ++ L     H+    LV +Y +   ++ A
Sbjct: 119 PNEYVFTTVLSACAHSGRVFEGMQ-CHGFLFKFGLV--FHHFVKSSLVHMYSKCFHVDLA 175

Query: 347 LEVI-----NTSSPSDPVLWRTLLGS 367
           L+V+     N  + +D   + ++L +
Sbjct: 176 LQVLESEHGNIDNDNDAFCYNSVLNA 201



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 16/174 (9%)

Query: 6   HARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
           HAR   L    +   I G  L+N Y+       SY   +F  ++N     WN++I  ++Q
Sbjct: 351 HARVEKLGIKNRV--IVGNALINMYSKCGCIDSSYD--VFFDMRNRDIITWNAMICGYSQ 406

Query: 66  SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNK-----CQELHGFVIRSGY 120
                QA+  +  ML A    P+  TF   L AC  +  +N+      Q +  F +  G 
Sbjct: 407 HGLGKQALLLFQDMLSAG-ECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGL 465

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPER-DLVSWNSII-SCYTQASFHL 172
           E    V   L R     G++E A +       + D+V+W  ++ +C    +++L
Sbjct: 466 EHYTCVVAVLCRA----GMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNL 515


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 186/532 (34%), Positives = 300/532 (56%), Gaps = 24/532 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ + +++      +W ++I  ++Q+    +A+  +  M M S  +P+ FTF   L 
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEM-MRSDGKPNEFTFATVLT 161

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +C R   L   +++HG +++  Y+  + V ++L+  YA  G I+ AR +F+ +PERD+VS
Sbjct: 162 SCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVS 221

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG--IFLHRI 215
             +II+ Y Q     EAL+++ R+  E +  +  T   LL++ + +  L+ G     H +
Sbjct: 222 CTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVL 281

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             E+ F     + N+L+DMY+KCGNL  A  +F  M +R  +SWN+M+VGY  HG G E 
Sbjct: 282 RRELPFY--AVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREV 339

Query: 276 ISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS-RYNLKPGIKHYGCL 333
           +  F+ M       PD++T L +L GCSH  + + G+  F  MV+  Y  KPG +HYGC+
Sbjct: 340 LELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCI 399

Query: 334 VDLYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           VD+ GRAG++++A E I    S P+  VL  +LLG+C++H +V+IGE   + L+++E  +
Sbjct: 400 VDMLGRAGRIDEAFEFIKRMPSKPTAGVLG-SLLGACRVHLSVDIGESVGRRLIEIEPEN 458

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
           AG+YV+L+ +YA       V   R ++    +   PG SWI+    +H F  +D++HP  
Sbjct: 459 AGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRR 518

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
           + +  K++EI  + K  GY  D S V       E+  EK    HSEKLA+ FGL  T +G
Sbjct: 519 EEVLAKMKEISIKMKQAGYVPDLSCVLY--DVDEEQKEKMLLGHSEKLALTFGLIATGEG 576

Query: 512 TSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             +R+ KNLR            S  + R++ +RD+ R+H   DG+CSCGDYW
Sbjct: 577 IPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 153/312 (49%), Gaps = 5/312 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L AC   +AL   Q +H  +I++ Y     + T L+  Y     +E AR V D MPE+++
Sbjct: 59  LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 118

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW ++IS Y+Q     EAL ++  M   D   + FT   +L+SC     L +G  +H +
Sbjct: 119 VSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGL 178

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             +  +   ++VG++L+DMYAK G +  A  +F  + +RDV+S  ++I GY   G  +EA
Sbjct: 179 IVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEA 238

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F ++   G  P+ +T+  LL   S   L++ G +  H  V R  L         L+D
Sbjct: 239 LEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQA-HCHVLRRELPFYAVLQNSLID 297

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           +Y + G L  A  + +       + W  +L G  K     E+ E+    L++ E     D
Sbjct: 298 MYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELF--RLMRDEKRVKPD 355

Query: 395 YV-LLATIYACT 405
            V LLA +  C+
Sbjct: 356 AVTLLAVLSGCS 367



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 3/175 (1%)

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
           ++G  G+    LL++C    AL  G  +H    +  ++ + Y+   L+  Y KC  L+ A
Sbjct: 49  EMGFHGYD--ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDA 106

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             V   M +++V+SW +MI  Y   G   EA++ F +M+ +   P+  TF  +L  C   
Sbjct: 107 RKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRA 166

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
             +  G +  H ++ ++N    I     L+D+Y +AG++++A E+       D V
Sbjct: 167 SGLGLGKQ-IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVV 220


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 200/549 (36%), Positives = 309/549 (56%), Gaps = 24/549 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQ-AWNSLIRAFAQSLSPLQAIFYYNHMLM 81
           G  L+ SY  S +  L  A+ +F+ +   + + +WNS++ A+ Q     +A+  Y  M +
Sbjct: 176 GNALITSY--SKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTV 233

Query: 82  ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA-ANGVI 140
             L   D FT    L A   V+ L    + H  +I+SGY +   V + L+  Y+   G +
Sbjct: 234 RGLI-VDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCM 292

Query: 141 EAARSVFDNMPERDLVSWNSIISCYT-QASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
              R VFD +   DLV WN++IS Y+       EAL+ + +++      D  +LVC++S+
Sbjct: 293 LDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISA 352

Query: 200 CAHVGALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
           C+++ + + G  +H +A ++    + + V NAL+ MY+KCGNL  A  +F  M + + +S
Sbjct: 353 CSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVS 412

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           +NSMI GY  HG G +++  F++ML   F P +ITF+ +L  C+H G VE+G  YF+MM 
Sbjct: 413 YNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMK 472

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEI 376
            ++ ++P   H+ C++DL GRAGKL +A  +I T  P DP    W  LLG+C+IH NVE+
Sbjct: 473 QKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIET-IPFDPGFFXWSALLGACRIHGNVEL 531

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
              A   L+QL+  +A  YV+LA IY+     +  A  RKL++  G+K  PG SWIE+  
Sbjct: 532 AIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNR 591

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSS--EDFLEKSSAY 494
           ++H FV +D  HP    I   LEE+M + K +GYT +    +V G     +   E    +
Sbjct: 592 RIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRVWQREEELRLGH 651

Query: 495 HSEKLAIAFGLATTPDGTSLRIVKNLR-------SIAY-----SRDLIVRDRVRYHHFRD 542
           HSEKLA++FGL +T +G  + + KNLR       +I Y      R++ VRD  R+H F+D
Sbjct: 652 HSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKD 711

Query: 543 GLCSCGDYW 551
           G CSCG YW
Sbjct: 712 GQCSCGGYW 720



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 177/351 (50%), Gaps = 12/351 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+++YA    S +  A  LF+++  P + ++N+LI A+A+      A   +  M  A L 
Sbjct: 80  LISAYA--KESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLD 137

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
             D FT +  + AC     L   ++LH   + +G +  V V   L+  Y+ NG ++ AR 
Sbjct: 138 M-DGFTLSGIITACGINVGL--IRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARR 194

Query: 146 VFDNMPE-RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           +F  + E RD VSWNS++  Y Q     +AL+LY  M    + +D FTL  +L++  +V 
Sbjct: 195 IFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQ 254

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN--LDSAFCVFSRMRKRDVLSWNSM 262
            L  G+  H    + G+ ++ +VG+ L+D+Y+KCG   LD    VF  +   D++ WN+M
Sbjct: 255 DLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCR-KVFDEISNPDLVLWNTM 313

Query: 263 IVGYGVH-GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           I GY ++    DEA+  F+Q+   G  PD  + + ++  CS+     +G +  H +  + 
Sbjct: 314 ISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQ-VHGLALKL 372

Query: 322 NLKPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           ++    I     L+ +Y + G L  A  + +T    + V + +++     H
Sbjct: 373 DIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQH 423



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 149/292 (51%), Gaps = 18/292 (6%)

Query: 123 CVVVSTN-LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           C V S N L+  YA    +E A  +FD MP+ D VS+N++I+ Y +      A +L+  M
Sbjct: 72  CNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEM 131

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIF--LHRIACEMGFVESVYVGNALVDMYAKCG 239
           R   + +DGFTL  ++++C     +N+G+   LH ++   G    V VGNAL+  Y+K G
Sbjct: 132 REAFLDMDGFTLSGIITAC----GINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNG 187

Query: 240 NLDSAFCVFSRMRK-RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
            L  A  +F  + + RD +SWNSM+V Y  H  G +A+  + +M + G   D  T   +L
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 299 CGCSHQGLVEEGVEYFHMMV-SRYNLKPGIKHYGC-LVDLYGRAGK-LEKALEVINTSSP 355
              ++   +  G+++   ++ S Y+      H G  L+DLY + G  +    +V +  S 
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKSGYHQN---SHVGSGLIDLYSKCGGCMLDCRKVFDEISN 304

Query: 356 SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACT 405
            D VLW T++    ++   ++ + A++   QL+       D  L+  I AC+
Sbjct: 305 PDLVLWNTMISGYSLYE--DLSDEALECFRQLQGVGHRPDDCSLVCVISACS 354



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 4/119 (3%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
            L +C     L  G  LH +  +     S Y+ N  + +Y+KC  L +A  VF      +
Sbjct: 14  FLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCN 73

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           V S+N++I  Y      + A   F +M      PDS+++  L+   + +G  +   + F
Sbjct: 74  VFSFNTLISAYAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAFQLF 128


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 186/532 (34%), Positives = 302/532 (56%), Gaps = 24/532 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ + +++      +W ++I  ++Q+    +A+  +  M M S  +P+ FTF   L 
Sbjct: 102 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEM-MRSDGKPNEFTFATVLT 160

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +C R   L   +++HG +++  Y+  + V ++L+  YA  G IE AR +F+ +PERD+VS
Sbjct: 161 SCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVS 220

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG--IFLHRI 215
             +II+ Y Q     EAL++++R++ E +  +  T   LL++ + +  L+ G     H +
Sbjct: 221 CTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVL 280

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             E+ F     + N+L+DMY+KCGNL  A  +F  M +R  +SWN+M+VGY  HG G E 
Sbjct: 281 RRELPFY--AVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREV 338

Query: 276 ISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS-RYNLKPGIKHYGCL 333
           +  F+ M       PD++T L +L GCSH  + + G+  +  MV+  Y +KP  +HYGC+
Sbjct: 339 LELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCI 398

Query: 334 VDLYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           VD+ GRAG++++A E I    S P+  VL  +LLG+C++H +V+IGE     L+++E  +
Sbjct: 399 VDMLGRAGRIDEAFEFIKRMPSKPTAGVLG-SLLGACRVHLSVDIGEYVGHRLIEIEPEN 457

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
           AG+YV+L+ +YA     E V   R ++    +   PG SWI+    +H F  +D++HP  
Sbjct: 458 AGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRR 517

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
           + +  K++EI  + K  GY  D S V       E+  EK    HSEKLA+ FGL TT +G
Sbjct: 518 EEVLAKMKEISIKMKQAGYVPDISCVLY--DVDEEQKEKMLLGHSEKLALTFGLITTGEG 575

Query: 512 TSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             +R+ KNLR            S  + R++ +RD+ R+H    G+CSCGDYW
Sbjct: 576 IPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 156/312 (50%), Gaps = 5/312 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L AC   +AL + Q +H  +I++ Y     + T L+  Y     +E AR V D MPE+++
Sbjct: 58  LNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 117

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW ++IS Y+Q     EAL ++  M   D   + FT   +L+SC     L +G  +H +
Sbjct: 118 VSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGL 177

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             +  +   ++VG++L+DMYAK G ++ A  +F  + +RDV+S  ++I GY   G  +EA
Sbjct: 178 IVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEA 237

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F+++   G  P+ +T+  LL   S   L++ G +  H  V R  L         L+D
Sbjct: 238 LEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQA-HCHVLRRELPFYAVLQNSLID 296

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           +Y + G L  A  + +       + W  +L G  K     E+ E+    L++ E     D
Sbjct: 297 MYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELF--RLMRDEKRVKPD 354

Query: 395 YV-LLATIYACT 405
            V LLA +  C+
Sbjct: 355 AVTLLAVLSGCS 366



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 1/164 (0%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL++C    AL  G  +H    +  ++ + Y+   L+  Y KC  L+ A  V   M +++
Sbjct: 57  LLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 116

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           V+SW +MI  Y   G   EA+S F +M+ +   P+  TF  +L  C     +  G +  H
Sbjct: 117 VVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQ-IH 175

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
            ++ ++N    I     L+D+Y +AG++E+A E+       D V
Sbjct: 176 GLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVV 219


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 186/529 (35%), Positives = 300/529 (56%), Gaps = 19/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A+ LF  +       WN+++  ++      +AI  +N M    L   D +T    + 
Sbjct: 173 MGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGL-LVDFYTIMSLIP 231

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A   V  L     +HGF+IR+GYE    + T LM  Y ++  ++ A  VF  M  +D+ +
Sbjct: 232 ASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAA 291

Query: 158 WNSIISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           W  +++ ++       A+K + +M   +++ LD   L+ +LSSC+H GAL  G  +H +A
Sbjct: 292 WTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALA 351

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            +  F  +++VG+A++DMYA CGNL+ A   F  M ++DV+ WN+MI G G++G G +AI
Sbjct: 352 IKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAI 411

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F QM  +G  PD  TF+ +L  CSH G+V EG++ F+ MV   ++ P ++HY C++D+
Sbjct: 412 DLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDI 471

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GRAG+L+ A   IN + P  P   ++ TLLG+C+IH N+++G    + + ++E   AG 
Sbjct: 472 LGRAGQLDAAYSFIN-NMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGY 530

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ +YA   + EGV  TR  ++S  +K  PG+S IEI  +++ F+  +K HP    I
Sbjct: 531 YVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKI 590

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
              L+ ++ + K  GY  + +++      S+D  +    +HSEK+AIAFGL  T   T +
Sbjct: 591 EGILKGLILKIKKAGYVPNTNVLL--QDVSDDMKKDILYHHSEKMAIAFGLMRTKPETII 648

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI KNLR            S  + R L+++D  R+H F+DG+CSC DYW
Sbjct: 649 RITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 187/383 (48%), Gaps = 10/383 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N+Y       L+ A+ +F+        +W  LI   A++   ++AI  +  M+M +  
Sbjct: 62  LMNAYV--YCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNF- 118

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +P+  T +  L A   +  +   + +H F +R G+E  V V T L+  Y+  G +  AR 
Sbjct: 119 KPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQ 178

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F++M ER++V+WN+I+S Y+   F  EA+ L+  MR + + +D +T++ L+ +   VG 
Sbjct: 179 LFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGC 238

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L +G  +H      G+    ++  AL+D+Y     +D A  VFS M  +DV +W  M+ G
Sbjct: 239 LQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTG 298

Query: 266 YGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           +      D AI  F +ML +     DSI  +G+L  CSH G +++G    H +  +    
Sbjct: 299 FSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQG-RRVHALAIKTCFA 357

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
             I     ++D+Y   G LE A          D V W  ++    ++     G  A+   
Sbjct: 358 NNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMN---GYGTDAIDLF 414

Query: 385 VQLEAA--SAGDYVLLATIYACT 405
           +Q++ +     +   ++ +YAC+
Sbjct: 415 LQMKGSGLDPDESTFVSVLYACS 437



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 150/326 (46%), Gaps = 3/326 (0%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
            ++K L   Q++H  +I SG      +S +LM  Y   G++  A+ +F + P +++VSW 
Sbjct: 32  RKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWT 91

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
            +IS   +    +EA+ ++  M   +   +  T+  +L + A++G + +   +H      
Sbjct: 92  ILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRG 151

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           GF  +V+V  ALVDMY+K G +  A  +F  M +R+V++WN+++ GY  HG  +EAI  F
Sbjct: 152 GFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLF 211

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
             M   G   D  T + L+      G ++ G    H  + R   +        L+D+Y  
Sbjct: 212 NLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTG-IHGFIIRTGYENDKHIKTALMDIYVS 270

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
              ++ A  V +  S  D   W  +L      R+ +        ++ ++        L+ 
Sbjct: 271 HNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMG 330

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKT 425
            + +C+    G  +  + + +  IKT
Sbjct: 331 ILSSCS--HSGALQQGRRVHALAIKT 354


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 185/538 (34%), Positives = 295/538 (54%), Gaps = 32/538 (5%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S++    + +F+++      +WN+L+   A+     +A+ +   M      RPD+FT + 
Sbjct: 117 STAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGF-RPDSFTLST 175

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L        + +  E+HGF  R+G++  V V ++L+  YA     + +  VFDN+P RD
Sbjct: 176 VLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRD 235

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            + WNS+++   Q     EAL ++ RM    V     T   L+  C ++ +L  G  LH 
Sbjct: 236 HILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHA 295

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                GF ++V++ ++L+DMY KCG +  A C+F +M   DV+SW +MI+GY +HG   E
Sbjct: 296 YVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPARE 355

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F++M +    P+ ITFL +L  CSH GLV++G +YF  M + Y + P ++H+  L 
Sbjct: 356 ALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALA 415

Query: 335 DLYGRAGKLEKALEVINTSS--PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           D  GRAG+L++A   I+     P+  V W TLL +C++H+N  + E   K +++LE  S 
Sbjct: 416 DTLGRAGELDEAYNFISKMQIKPTASV-WSTLLRACRVHKNTMLAEEVAKKIMELEPRSI 474

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
           G +V+L+ +Y+ +      A  R+ ++  G+K  P  SWIE+ +++H FV  D+SHP  D
Sbjct: 475 GSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYD 534

Query: 453 MIYRKLE---EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY----HSEKLAIAFGL 505
            I   L    E M R   +  T+D           +D  E+  +Y    HSEKLAI FG+
Sbjct: 535 RIIDALNAFSEQMAREGHVPNTED---------VFQDIEEEHKSYVLCGHSEKLAIVFGI 585

Query: 506 ATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +TP GT +R++KNLR            S    R+++VRD  R+HHF+DG CSCGD+W
Sbjct: 586 ISTPAGTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 106/239 (44%), Gaps = 22/239 (9%)

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGF--TLVCLLSSCAHVGALNMGIFLHRI 215
           W   I          +A+ L+ RMR           +L   L SCA +G   +G  LH +
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 216 ACEMGFVESVYVGNALVDMYAK--CGNLDS-------------AF----CVFSRMRKRDV 256
           A   G     +  NAL+++Y K  C  LDS             AF     VF  M +RDV
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           +SWN++++G    GR  EA+ F ++M   GF PDS T   +L   +    V+ G+E  H 
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLE-VHG 194

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
              R      +     L+D+Y    + + +++V +     D +LW +LL  C  + +VE
Sbjct: 195 FAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVE 253


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 186/556 (33%), Positives = 294/556 (52%), Gaps = 51/556 (9%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LF  + +    +WN++I  + Q+    +A+++++ ML  S   PD FT T  L AC  + 
Sbjct: 250 LFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLG 309

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV----------------- 146
            ++  +++H +++RS       V+  L+  YA +G +E AR V                 
Sbjct: 310 MVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTAL 369

Query: 147 ----------------FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190
                           FD M  RD+V+W ++I  Y Q   + EA++L+  M       + 
Sbjct: 370 LEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNS 429

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
           +T+  +LS CA +  L  G  +H  A      +S  V N++V MYA+ G+L  A  VF R
Sbjct: 430 YTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDR 489

Query: 251 MR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
           +  +++ ++W SMIV    HG G++A+  F++ML  G  PD ITF+G+L  C+H G V+E
Sbjct: 490 VHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDE 549

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGS 367
           G  YF  +  ++ + P + HY C+VDL  RAG   +A E I    P +P  + W +LL +
Sbjct: 550 GKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQ-QMPVEPDAIAWGSLLSA 608

Query: 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTP 427
           C++H+N ++ E+A + L+ ++  ++G Y  L+ +Y+        A+  K  K   +K   
Sbjct: 609 CRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKET 668

Query: 428 GWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDF 487
           G+SW  IGN+VH F  DD  HP  D +YR   ++    K  G+  D  L +V     ++ 
Sbjct: 669 GFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPD--LQSVLHDVDDEL 726

Query: 488 LEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRV 535
            E+  + HSEKLAIAFGL +TP+ T+LRI+KNLR            S    R++I+RD  
Sbjct: 727 KEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDAT 786

Query: 536 RYHHFRDGLCSCGDYW 551
           R+HHF+DG CSC DYW
Sbjct: 787 RFHHFKDGFCSCKDYW 802



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 180/404 (44%), Gaps = 79/404 (19%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ YA   S  L+ A+ +F ++      +W  ++    +     +AI  +  M+   LS
Sbjct: 102 LLSLYA--KSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLS 159

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P  FT T  L +C   +A    +++H FV++ G   CV V+ +++  Y   G  E AR+
Sbjct: 160 -PTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARA 218

Query: 146 VFD-------------------------------NMPERDLVSWNSIISCYTQASFHLEA 174
           VF+                               NMP+R +VSWN++I+ Y Q   + +A
Sbjct: 219 VFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKA 278

Query: 175 LKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR--IACEMGFVESVYVGNAL 231
           L  + RM  +  +  D FT+  +LS+CA++G +++G  +H   +   M ++  V   NAL
Sbjct: 279 LWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVT--NAL 336

Query: 232 VDMYAKCGNLDSAFCV---------------------------------FSRMRKRDVLS 258
           + MYAK G++++A  V                                 F  M  RDV++
Sbjct: 337 ISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVA 396

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           W +MIVGY  +G  DEA+  F+ M+ +G  P+S T   +L  C+    +E G +  H   
Sbjct: 397 WTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYG-KQIHCKA 455

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
            R   +        +V +Y R+G L  A  V       D V WR
Sbjct: 456 IRSLQEQSSSVSNSIVTMYARSGSLPWARRVF------DRVHWR 493



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 130/273 (47%), Gaps = 41/273 (15%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           +R V    +L+  YA +G +  AR+VF  MPERD VSW  ++    +     EA+K++  
Sbjct: 93  QRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLD 152

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M  + +    FTL  +LSSCA   A  +G  +H    ++G    V V N++++MY KCG+
Sbjct: 153 MVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGD 212

Query: 241 LDSAFCVFSRMRKRDVLSWNSM-------------------------------IVGYGVH 269
            ++A  VF RM +R V SWN+M                               I GY  +
Sbjct: 213 AETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQN 272

Query: 270 GRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           G   +A+ FF +ML  +   PD  T   +L  C++ G+V  G +     V  Y L+  + 
Sbjct: 273 GLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQ-----VHAYILRSRMP 327

Query: 329 HYG----CLVDLYGRAGKLEKALEVINTSSPSD 357
           + G     L+ +Y ++G +E A  V+  +  +D
Sbjct: 328 YIGQVTNALISMYAKSGSVENARGVMQQAVMAD 360



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 1/142 (0%)

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           +V+  N+L+ +YAK G L  A  VF+ M +RD +SW  M+VG    GR  EAI  F  M+
Sbjct: 95  NVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMV 154

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  P   T   +L  C+       G    H  V +  L   +     ++++YG+ G  
Sbjct: 155 TDGLSPTQFTLTNVLSSCAATEARGVG-RKVHSFVVKLGLSSCVPVANSVLNMYGKCGDA 213

Query: 344 EKALEVINTSSPSDPVLWRTLL 365
           E A  V           W  ++
Sbjct: 214 ETARAVFERMPERSVSSWNAMV 235



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 110/284 (38%), Gaps = 74/284 (26%)

Query: 35  SSSLSYAQLLFNQIQ-NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93
           S SL +A+ +F+++    +T  W S+I A AQ      A+  +  ML   + +PD  TF 
Sbjct: 477 SGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGV-KPDRITFV 535

Query: 94  FTLKACERV-------KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
             L AC  V       +   + Q+ HG V    +  C+V   +L+   A  G+   A+  
Sbjct: 536 GVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMV---DLL---ARAGLFSEAQEF 589

Query: 147 FDNMP-ERDLVSWNSIIS-CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
              MP E D ++W S++S C    +  L  L   E++   D G                 
Sbjct: 590 IQQMPVEPDAIAWGSLLSACRVHKNADLAELAA-EKLLSIDPG----------------- 631

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV-----LSW 259
             N G +                 +AL ++Y+ CG  + A  ++ R + + V      SW
Sbjct: 632 --NSGAY-----------------SALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSW 672

Query: 260 NSMIVGYGVHGRGDE-------------AISFFKQMLMAGFHPD 290
               +G  VH  G +             A   +  +  AGF PD
Sbjct: 673 TH--IGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPD 714


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 199/554 (35%), Positives = 291/554 (52%), Gaps = 47/554 (8%)

Query: 42  QLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101
           +LL     N +  A+N++I  +       +A+     M+ + +   D FT+   ++AC  
Sbjct: 240 ELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIEL-DEFTYPSVIRACAT 298

Query: 102 VKALNKCQELHGFVIR-------------SGYERC-----------------VVVSTNLM 131
              L   +++H +V+R             S Y +C                 +V    L+
Sbjct: 299 AGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALL 358

Query: 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191
            GY ++G I  A+ +F  M E++++SW  +IS   +  F  E LKL+  M+ E      +
Sbjct: 359 SGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDY 418

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
                + SCA +GA   G   H    ++GF  S+  GNAL+ MYAKCG ++ A  VF  M
Sbjct: 419 AFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTM 478

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
              D +SWN++I   G HG G EA+  +++ML  G  PD IT L +L  CSH GLV++G 
Sbjct: 479 PCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGR 538

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCK 369
           +YF  M + Y + PG  HY  L+DL  R+GK   A  VI  S P  P   +W  LL  C+
Sbjct: 539 KYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIE-SLPFKPTAEIWEALLSGCR 597

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           +H N+E+G IA   L  L     G Y+LL+ ++A T   E VAR RKL++  G+K     
Sbjct: 598 VHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVAC 657

Query: 430 SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
           SWIE+  QVH F+VDD SHP+A+ +Y  L+++    + +GY  D S V +    S+   E
Sbjct: 658 SWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFV-LHDVESDGHKE 716

Query: 490 KSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRY 537
                HSEK+A+AFGL   P GT++RI KNLR            S    RD+I+RDR R+
Sbjct: 717 DMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRF 776

Query: 538 HHFRDGLCSCGDYW 551
           HHFR+G CSCG++W
Sbjct: 777 HHFRNGECSCGNFW 790



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 185/476 (38%), Gaps = 113/476 (23%)

Query: 35  SSSLSYAQLLFNQIQNPQ---------------------------------TQAWNSLIR 61
           SS L+YA+ LF++I  P                                  T  +N++I 
Sbjct: 62  SSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMIT 121

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNK-CQELHGFVIRSGY 120
            F+ +     AI  +  M      +PD FTF   L     V    K C + H   ++SG 
Sbjct: 122 GFSHNNDGYSAINLFCKMKHEGF-KPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGA 180

Query: 121 ERCVVVSTNLMRGYA----ANGVIEAARSVFDNMPERD---------------------- 154
                VS  L+  Y+    +  ++ +AR VFD + E+D                      
Sbjct: 181 GYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEE 240

Query: 155 ----------LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
                     LV++N++IS Y    F+ EAL++  RM    + LD FT   ++ +CA  G
Sbjct: 241 LLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAG 300

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
            L +G  +H          S +  N+LV +Y KCG  D A  +F +M  +D++SWN+++ 
Sbjct: 301 LLQLGKQVHAYVLRREDF-SFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLS 359

Query: 265 GY-------------------------------GVHGRGDEAISFFKQMLMAGFHPDSIT 293
           GY                                 +G G+E +  F  M   GF P    
Sbjct: 360 GYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYA 419

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F G +  C+  G    G +Y H  + +      +     L+ +Y + G +E+A +V  T 
Sbjct: 420 FSGAIKSCAVLGAYCNGQQY-HAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTM 478

Query: 354 SPSDPVLWRTLLGSCKIH----RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
              D V W  L+ +   H      V++ E  +K  ++ +  +     LL  + AC+
Sbjct: 479 PCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRIT-----LLTVLTACS 529



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 31/238 (13%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMR--KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
             +V  Y   G++  A  VF +     RD + +N+MI G+  +  G  AI+ F +M   G
Sbjct: 84  TTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY----GCLVDLYGRAGK 342
           F PD+ TF  +L G +     E+    FH       LK G  +       LV +Y +   
Sbjct: 144 FKPDNFTFASVLAGLALVADDEKQCVQFHAAA----LKSGAGYITSVSNALVSVYSKCAS 199

Query: 343 ----LEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE---IAMKNLVQLEAASAGDY 395
               L  A +V +     D   W T++     +   ++GE     M + ++L A +A   
Sbjct: 200 SPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNA--- 256

Query: 396 VLLATIYACTKDEEGVARTRKLIKS----------NGIKTTPGWSWIEIGNQVHKFVV 443
            +++        +E +   R+++ S          + I+       +++G QVH +V+
Sbjct: 257 -MISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVL 313


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 189/561 (33%), Positives = 298/561 (53%), Gaps = 49/561 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A  +F  +      +WN++I  + Q+     A+ +++ ML AS   PD FT T  L 
Sbjct: 429 MELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLS 488

Query: 98  ACERVKALNKCQELHGFVIRSGY---------------------------ERCVVVSTN- 129
           AC  ++ L   +++H +++R+G                            ++ VV   N 
Sbjct: 489 ACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNV 548

Query: 130 -----LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
                L+ GY   G  + AR +FD M  RD+++W ++I  Y Q   + EA++L+  M   
Sbjct: 549 ISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILI 608

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
               +  TL  +LS+CA +  L+ G  +H  A      +SV V NA++ +YA+ G++  A
Sbjct: 609 GPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLA 668

Query: 245 FCVFSRM-RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
             VF ++  +++ ++W SMIV    HG G++A+  F++M+  G  PD IT++G+L  C+H
Sbjct: 669 RRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAH 728

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWR 362
            G V++G  Y+  M + + + P + HY C+VDL+ RAG L +A E I       D V+W 
Sbjct: 729 AGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWG 788

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
           +LL +C++ +N ++ E+A   L+ ++  ++G Y  LA +Y+        AR  KL K  G
Sbjct: 789 SLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKG 848

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           +K   G+SW  +  +VH F  DD  HP  D IYRK  E+    K  G+  D  L +V   
Sbjct: 849 VKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPD--LNSVLHD 906

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
             ++  E+  + HSEKLAIAFGL +TP+ T+LRI+KNLR            S    R++I
Sbjct: 907 VDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKFVDREII 966

Query: 531 VRDRVRYHHFRDGLCSCGDYW 551
           VRD  R+HHFRDG CSC DYW
Sbjct: 967 VRDATRFHHFRDGYCSCKDYW 987



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 174/402 (43%), Gaps = 75/402 (18%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ YA   S  L  A ++F ++ +    +W  +I    +S     A+  +  M+    +
Sbjct: 287 LLSLYA--KSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFA 344

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P  FT T  L +C  ++A    +++H FV++ G   CV V+ +++  Y   G  E AR+
Sbjct: 345 -PSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARA 403

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-------------RFEDVGLDG-- 190
           VF+ M  R + SWN ++S YT       A+ ++E M              +   GLDG  
Sbjct: 404 VFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMA 463

Query: 191 -----------------FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
                            FT+  +LS+CA++  L MG  +H      G   S  + NAL+ 
Sbjct: 464 LKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALIS 523

Query: 234 MYAKCGNLDSA----------------FC-----------------VFSRMRKRDVLSWN 260
            YAK G++++A                F                  +F  M  RDV++W 
Sbjct: 524 TYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWT 583

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           +MIVGY  +G+ DEA+  F+ M++ G  P+S T   +L  C+    ++ G +  H    R
Sbjct: 584 AMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYG-KQIHCKAIR 642

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
              +  +     ++ +Y R+G +  A  V       D + WR
Sbjct: 643 SLQEQSVSVSNAIITVYARSGSVPLARRVF------DQICWR 678



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 124/261 (47%), Gaps = 33/261 (12%)

Query: 129 NLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188
           +L+  YA +G +  A  VF  MP+RD VSW  +I    ++    +A+K +  M  E    
Sbjct: 286 SLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAP 345

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
             FTL  +LSSCA + A  +G  +H    ++G    V V N+++ MY KCG+ ++A  VF
Sbjct: 346 SQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVF 405

Query: 249 SRMR-------------------------------KRDVLSWNSMIVGYGVHGRGDEAIS 277
            RM+                               +R ++SWN++I GY  +G    A+ 
Sbjct: 406 ERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALK 465

Query: 278 FFKQMLMA-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           FF +ML A    PD+ T   +L  C++  +++ G +  H  + R  +    +    L+  
Sbjct: 466 FFSRMLSASSMEPDAFTVTSVLSACANLRMLKMG-KQMHSYILRTGMPCSSQIMNALIST 524

Query: 337 YGRAGKLEKALEVINTSSPSD 357
           Y ++G +E A  +++ +  +D
Sbjct: 525 YAKSGSVETARRIMDQAVVAD 545



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 1/163 (0%)

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           + +  N+L+ +YAK G L  A  VF+ M  RD +SW  MIVG    GR  +A+  F  M+
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             GF P   T   +L  C+       G    H  V +  L   +     ++ +YG+ G  
Sbjct: 340 SEGFAPSQFTLTNVLSSCAAMEACGVG-RKVHPFVVKLGLSSCVPVANSVLYMYGKCGDA 398

Query: 344 EKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           E A  V           W  ++        +E+     +N+V+
Sbjct: 399 ETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVE 441


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 188/522 (36%), Positives = 294/522 (56%), Gaps = 18/522 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+ + +    A+NS+I  F      +         ++ ++ + D  ++   L  C   K
Sbjct: 170 VFDNVSSFNVFAFNSMINGFLDR-GQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTK 228

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            +    ++H   ++   E  V V + L+  Y        A  VF+ +PE+++VSW +I++
Sbjct: 229 EVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMT 288

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            YTQ     +AL+L+  M  E V  + FT    L+SCA +  L  G  L     + G   
Sbjct: 289 AYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWG 348

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            + V NAL++MY+K G+++ A  VF  M  RDV+SWNS+I+GY  HGR  EA+  F  ML
Sbjct: 349 LLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDML 408

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
            A   P  +TF+G+L  C+  GLV+EG  Y ++M+    +KPG +HY C+V L  R G+L
Sbjct: 409 FAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRL 468

Query: 344 EKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
           ++A   I ++   +D V WR+LL SC+++RN  +G    + + QL+    G YVLL+ +Y
Sbjct: 469 DEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMY 528

Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
           A     +GV + R+L++  G++  PG SWI++G++VH F  +DK HP  + I +KL+E++
Sbjct: 529 AKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELI 588

Query: 463 HRAKFIGYTKDESLVAVSGSSSEDFL-EKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
            + K IGY  +   +AV+    ED   E+   YHSEKLA+AFGL  TP G ++RI+KN+R
Sbjct: 589 DKIKVIGYVPN---IAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVR 645

Query: 522 ------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                       S+A  R ++VRD VR+H   DG+CSC DYW
Sbjct: 646 ICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 687



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 138/280 (49%), Gaps = 8/280 (2%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           + +H  V+R+     VV   NL+  Y   G +  AR VFD MP R+ VS N ++S Y  +
Sbjct: 36  KAVHARVVRAARFD-VVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASS 94

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
             H +AL L   +R  D GL+ + L   +++ AHV + +MG   H  A + G  E  YV 
Sbjct: 95  GRHRDALAL---LRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVC 151

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           +A++ MY +C ++D A  VF  +   +V ++NSMI G+   G+ D + S  + M+     
Sbjct: 152 SAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQ 211

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
            D ++++ +L  C+    V  G +  H    +  L+  +     LVD+YG+     +A  
Sbjct: 212 WDHVSYVAVLGHCASTKEVVLGSQ-VHTQALKRRLELNVYVGSALVDMYGKCDFPHEANR 270

Query: 349 VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
           V       + V W  ++ +   +   E+ E A++  + +E
Sbjct: 271 VFEVLPEKNIVSWTAIMTA---YTQNELFEDALQLFLDME 307



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 177/398 (44%), Gaps = 19/398 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F+ + +    + N L+  +A S     A+     +L  +    + +  +  + 
Sbjct: 66  LGLARQVFDAMPSRNPVSGNLLMSGYASSGRHRDAL----ALLRVADFGLNEYVLSSAVA 121

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A   V++ +  ++ HG+ I++G      V + ++  Y     ++ A  VFDN+   ++ +
Sbjct: 122 ATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFA 181

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVG-LDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           +NS+I+ +      ++      R    +VG  D  + V +L  CA    + +G  +H  A
Sbjct: 182 FNSMINGFLDRG-QMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQA 240

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            +     +VYVG+ALVDMY KC     A  VF  + +++++SW +++  Y  +   ++A+
Sbjct: 241 LKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDAL 300

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG--VEYFHMMVSRYNLKPGIKHYGCLV 334
             F  M M G  P+  T+   L  C+    ++ G  +    M    + L P       L+
Sbjct: 301 QLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCN---ALM 357

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           ++Y ++G +E A  V  +    D V W +++     H        A  ++  L A     
Sbjct: 358 NMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDM--LFAEEVPS 415

Query: 395 YV-LLATIYACTK---DEEGVARTRKLIKSNGIKTTPG 428
           YV  +  + AC +    +EG      ++K  G+K  PG
Sbjct: 416 YVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVK--PG 451


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 195/579 (33%), Positives = 305/579 (52%), Gaps = 61/579 (10%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L++ YA      ++YA+ +F+++       WN++I  + +    L   F     +  S  
Sbjct: 155 LMDMYA--ACGRINYARNVFDEMSQRDVVTWNTMIERYCR-FGLLDEAFKLFEEMKDSNV 211

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVI----------------------------- 116
            PD       + AC R   +   + ++ F+I                             
Sbjct: 212 MPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAME 271

Query: 117 --RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
             R    R + VST ++ GY+  G ++ AR +FD    +DLV W ++IS Y ++    EA
Sbjct: 272 FFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEA 331

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L+++E M    +  D  T++ ++S+C ++G L+   ++HR     G    + + NAL++M
Sbjct: 332 LRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINM 391

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAKCG LD+A  VF +M  R+V+SW+SMI  + +HG   +++S F QM      P+ +TF
Sbjct: 392 YAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTF 451

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           +G+L GCSH GLVEEG + F  M   YN+ P I+HYGC+VDL+GRA  L +ALEVI  S 
Sbjct: 452 VGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIE-SM 510

Query: 355 PSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           P  P  V+W +L+ +C++H  +E+GE+A K +++LE    G  VL++ IYA     + V 
Sbjct: 511 PMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVR 570

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
             R +++   +    G S I++  + H+F++ DK H  ++ IY KL E++ + K  GY  
Sbjct: 571 IIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVP 630

Query: 473 D--ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS------LRIVKNLR--- 521
           D    LV V     +D +     +HSEKLA+ FGL              +RIVKNLR   
Sbjct: 631 DGGSVLVDVEEEEKKDLV----LWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRVCE 686

Query: 522 ---------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                    S  Y  ++IVRDR R+H ++DGLCSC DYW
Sbjct: 687 DCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 185/406 (45%), Gaps = 38/406 (9%)

Query: 40  YAQLLFNQIQN-PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           YA  LF+ I   P++  +NSL+R  ++S  P   I +Y  +      R D  +F   LKA
Sbjct: 65  YALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVG-GRFDRISFPPILKA 123

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
             +V AL +  ELHGF  +        V T LM  YAA G I  AR+VFD M +RD+V+W
Sbjct: 124 VSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTW 183

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218
           N++I  Y +     EA KL+E M+  +V  D   L  ++S+C   G +     ++    E
Sbjct: 184 NTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIE 243

Query: 219 --------------------------MGF-----VESVYVGNALVDMYAKCGNLDSAFCV 247
                                     M F     V +++V  A+V  Y+K G LD A  +
Sbjct: 244 NDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVI 303

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F +   +D++ W +MI  Y       EA+  F++M  +G  PD +T L ++  C + G +
Sbjct: 304 FDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTL 363

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
           ++  ++ H       L+  +     L+++Y + G L+ A +V       + V W +++ +
Sbjct: 364 DKA-KWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINA 422

Query: 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEG 410
             +H       +++   ++ E     +   +  +Y C+     EEG
Sbjct: 423 FAMHGEAS-DSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEG 467


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 212/631 (33%), Positives = 330/631 (52%), Gaps = 96/631 (15%)

Query: 13  NKARQAHEIHGEW----------LLNSYAISVSS--SLSYAQLLFNQIQNPQTQAWNSLI 60
           N   +  +IHG+           ++  +  S SS  S+ YA  +F + +   +  +N+LI
Sbjct: 53  NSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALI 112

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
           R  A++     +I ++  ML   +S PD  TF F LK+   +      + LH  +++ G 
Sbjct: 113 RGLAENSRFESSISFFVLMLKWKIS-PDRLTFPFVLKSAAALSNGGVGRALHCGILKFGL 171

Query: 121 E-----------------------------------RCVVVSTNLMRGYAANGVIEAARS 145
           E                                     V++   L+ GY   G +  A  
Sbjct: 172 EFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATE 231

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV-----GLDGF--------- 191
           +FD+MP++D  SWNS+I+ + +      A +L+ +M  ++V      ++GF         
Sbjct: 232 LFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKA 291

Query: 192 -----------------TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
                            T+V  LS+CA +GAL+ G+ +H      GF  ++ +G ALVDM
Sbjct: 292 LETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDM 351

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAKCGN++ A  VF   +++ +L W+ MI G+ +HG   +A+ +F+ M   G  PDS+ F
Sbjct: 352 YAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVF 411

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           L +L  CSH G V EG+++F  M   Y ++P +KHY  +VD+ GRAG+L++AL+ I  + 
Sbjct: 412 LAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIR-AM 470

Query: 355 PSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
           P  P  V+W  L  +C+ H+NVE+ E+A K L+QLE    G YV L+  YA     +   
Sbjct: 471 PITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAE 530

Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
           R R  ++ +G    PGWS+IE+ +++H+FV  D +H  A  IY KL+EI   A+  GYTK
Sbjct: 531 RVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTK 590

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           +  +  V  +  E+  E++  YHSEKLA+AFG+ +T  GT++RIVKNLR           
Sbjct: 591 E--IECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKY 648

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S    R++I+RD  R+HHF DG+CSCGDYW
Sbjct: 649 ASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 202/531 (38%), Positives = 282/531 (53%), Gaps = 27/531 (5%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPL-QAIFYYNHMLMAS--LSRPDTFTFTFTLK 97
           A  +F+ +      +WNS+I A + S + + QA+ Y+  M+     LSR    TF   L 
Sbjct: 390 AAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSR---VTFINILS 446

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLV 156
           A   +       ++H  V++        +   L+  Y   G +     +F  M E RD V
Sbjct: 447 AVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEV 506

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWNS+IS Y       +A+ L   M  +   LD FT   +LS+CA V  L  G+ +H   
Sbjct: 507 SWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACG 566

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                   V VG+ALVDMY+KCG +D A   F  M  R+V SWNSMI GY  HG G++A+
Sbjct: 567 IRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKAL 626

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F +M++ G  PD +TF+G+L  CSH G VEEG E+F  M   Y L P ++H+ C+VDL
Sbjct: 627 KLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDL 686

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSC--KIHRNVEIGEIAMKNLVQLEAASA 392
            GRAGKL++  + IN S P  P  ++WRT+LG+C     RN E+G  A + L++LE  +A
Sbjct: 687 LGRAGKLDEVGDFIN-SMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNA 745

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
            +YVLLA +YA  +  E VA+ R  +K   +K   G SW+ + + VH FV  DK HP+ D
Sbjct: 746 VNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKD 805

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
           +IY KL E+  + +  GY                    S  YHSEK+A+AF L T     
Sbjct: 806 LIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLS--YHSEKIAVAFVL-TRQSAL 862

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +RI+KNLR            S    R +++RD  R+HHF DG CSCGDYW
Sbjct: 863 PIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 913



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 178/413 (43%), Gaps = 63/413 (15%)

Query: 8   RYVGLNKARQAHEIH---------GEWLLNSYAISVS---SSLSYAQLLFNQIQNPQTQA 55
           RY G   + +A E+H         G   L++  I++      L  AQ LF+++ N     
Sbjct: 108 RYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVT 167

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ---ELH 112
           W  LI  + Q+  P +A   +  M+ A    P+ + F   L+AC+     + C+   ++H
Sbjct: 168 WACLISGYTQNGKPDEACARFRDMVRAGFI-PNHYAFGSALRACQE-SGPSGCKLGVQIH 225

Query: 113 GFVIRSGYERCVVVSTNLMRGYAAN-GVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           G + ++ Y   VVV   L+  Y +       ARSVFD +  R+ +SWNSIIS Y++    
Sbjct: 226 GLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDA 285

Query: 172 LEALKLYERMRFEDVGL-----DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-V 225
           + A  L+  M+ E +G      D F+   +L           G  +H      G  ++ V
Sbjct: 286 VSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEE-----GRRKGREVHAHVIRTGLNDNKV 340

Query: 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD------------ 273
            +GN LV+MYAK G +  A  VF  M ++D +SWNS+I G   +   +            
Sbjct: 341 AIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEY 400

Query: 274 --------------------EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
                               +A+ +F QM+  G+    +TF+ +L   S   L  E    
Sbjct: 401 DQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSL-HEVSHQ 459

Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLL 365
            H +V +Y L         L+  YG+ G++ +  ++    S   D V W +++
Sbjct: 460 IHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMI 512


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 199/564 (35%), Positives = 300/564 (53%), Gaps = 57/564 (10%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++  A+ +F++  +     +N+++  + +     + +     ML     RPD  T    +
Sbjct: 290 AIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHG-PRPDRITMLSAV 348

Query: 97  KACERVKALNKCQELHGFVIRSG--------------YERC----------------VVV 126
            AC  +  ++  +  HG+V+R+G              Y +C                  V
Sbjct: 349 SACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRV 408

Query: 127 STN-LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           S N L+ G+  NG +E+A  +F  MP+ DLVSWN++I    Q S   EA++L+  M+ E 
Sbjct: 409 SWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEG 468

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           +  D  T+V + S+C ++GAL++  ++H    +      +++G ALVDM+A+CG+  SA 
Sbjct: 469 ITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAM 528

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF++M KRDV +W + I    + G G  AI  F +ML  G  PD + F+ LL   SH G
Sbjct: 529 QVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGG 588

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS--PSDPVLWRT 363
           LVE+G   F  M   Y + P   HYGC+VDL GRAG L +AL +IN+    P+D V+W +
Sbjct: 589 LVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPND-VIWGS 647

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LL +C++H+NV+I   A + + +L+    G +VLL+ IYA     + VA+ R  +K  G 
Sbjct: 648 LLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGA 707

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
              PG S IEI  ++ +F   D+SHP+   I   L+EI  R + IGY  D + V +    
Sbjct: 708 HKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLL---- 763

Query: 484 SEDFLEKSSAY----HSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
             D  EK   Y    HSEKLAIAF L +T  G  +R+ KNLR            S +YSR
Sbjct: 764 --DVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSR 821

Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
           ++IVRD  R+H F+ G CSCGDYW
Sbjct: 822 EIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 159/311 (51%), Gaps = 2/311 (0%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           ++SLIR F+      +AI  +   LM   + PD FTF F L AC +  AL +  ++HG +
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQ-LMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAI 165

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
           ++ G+ER + V  +L+  Y   G I+  R VFD M ER++VSW S+I  Y +   + EA+
Sbjct: 166 VKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAV 225

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
            L+  M    +  +  T+V ++S+CA +  L +G  +     E+    +  + NALVDMY
Sbjct: 226 SLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMY 285

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
            KCG +D A  +F     ++++ +N+++  Y   G   E ++   +ML  G  PD IT L
Sbjct: 286 MKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITML 345

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
             +  CS    V  G ++ H  V R  L+        ++++Y + GK E A  V +    
Sbjct: 346 SAVSACSELDDVSCG-KWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLN 404

Query: 356 SDPVLWRTLLG 366
              V W +L+ 
Sbjct: 405 KTRVSWNSLIA 415



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 159/361 (44%), Gaps = 33/361 (9%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+++      +W SLI  +A+     +A+  +  M+   + RP++ T    + AC +++
Sbjct: 196 VFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGI-RPNSVTMVGVISACAKLQ 254

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L   +++   +     E   ++   L+  Y   G I+ AR +FD   +++LV +N+I+S
Sbjct: 255 DLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMS 314

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y +     E L +   M       D  T++  +S+C+ +  ++ G + H      G   
Sbjct: 315 NYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEG 374

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD---------- 273
              V NA+++MY KCG  + A  VF RM  +  +SWNS+I G+  +G  +          
Sbjct: 375 WDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMP 434

Query: 274 ---------------------EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
                                EAI  F+ M   G   D +T +G+   C + G ++   +
Sbjct: 435 DSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLA-K 493

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372
           + H  + + ++   +     LVD++ R G  + A++V N     D   W   +G+  +  
Sbjct: 494 WIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEG 553

Query: 373 N 373
           N
Sbjct: 554 N 554



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 136/276 (49%), Gaps = 9/276 (3%)

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA------ARSVF--DNMP 151
           ++ K + + ++LH  + ++G     +  TNL+      G  E+      A  +F  DN  
Sbjct: 41  KKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGI 100

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
                 ++S+I  ++      +A+ ++ ++       D FT   +LS+C    AL  G  
Sbjct: 101 MGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQ 160

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H    +MGF   ++V N+L+  Y +CG +D    VF +M +R+V+SW S+I GY   G 
Sbjct: 161 VHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGC 220

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
             EA+S F +M+  G  P+S+T +G++  C+    ++ G E     +    L+       
Sbjct: 221 YKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLG-EQVCTCIGELELEVNALMVN 279

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
            LVD+Y + G ++KA ++ +     + VL+ T++ +
Sbjct: 280 ALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSN 315


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 188/529 (35%), Positives = 294/529 (55%), Gaps = 29/529 (5%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM---ASLSRPDTFTFTFTLKACE 100
           LF++I +    +W S+I    Q+     A+  +  +L+    S+   D       L  C 
Sbjct: 35  LFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVLLGC- 93

Query: 101 RVKALNK------CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            V A +K       + +HG VI+ G+ERCV V   LM  YA  G +  A+ VFD M E D
Sbjct: 94  VVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVAK-VFDGMNESD 152

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
              WNS+I+ Y Q     EA  ++  M    V    F    ++      GAL +G  +H 
Sbjct: 153 HYFWNSVIAEYAQNGLSAEAFSVFGDM----VKSGNFRYNAVIMDXGLSGALQLGKCIHH 208

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              +M   +SV+VG ++VD+Y KC  ++ A   F  M+ ++V SW +M+ GYG+HGR  E
Sbjct: 209 QVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRAKE 268

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F +M+ +G  P+ ITF+ +L  CSH G+++EG  +F+ M   + ++PGI+HY C+V
Sbjct: 269 AMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYLCMV 328

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           DL GRAG L     +   ++  D ++W +LLG+C+IH+NVE+GEI+ + L +L+ ++ G 
Sbjct: 329 DLLGRAGYLXCYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELDXSNCGY 388

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ IYA     + V R R L+KS G+   PG+S +E+  ++H  +V DK HP  + I
Sbjct: 389 YVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDKEHPQHEKI 448

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           Y  L++   + + +GY  + ++V       E  +      HSEKLA+AFG+  +  G+ +
Sbjct: 449 YEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGM--VLRVHSEKLAVAFGIMNSVPGSII 506

Query: 515 RIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            I+KNLR                +R+++VRD  R+HHF++G CSCGDYW
Sbjct: 507 HIIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 127/272 (46%), Gaps = 21/272 (7%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG---------LDGFTL 193
           +R +FD +P+R +VSW SII+   Q     +A+++++ +  E+ G         +D   L
Sbjct: 32  SRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVLL 91

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
            C++S+ + +G   +   +H +  + GF   V VGN L+D YAK G +  A  VF  M +
Sbjct: 92  GCVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVAK-VFDGMNE 150

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVE 312
            D   WNS+I  Y  +G   EA S F  M+ +G F  +++     L G    G      +
Sbjct: 151 SDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLSGALQLG------K 204

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH- 371
             H  V + +L+  +     +VD+Y +  ++E A +  +     +   W  ++    +H 
Sbjct: 205 CIHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHG 264

Query: 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403
           R  E  EI  K    + +    +Y+   ++ A
Sbjct: 265 RAKEAMEIFYK---MIRSGVKPNYITFVSVLA 293


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 191/527 (36%), Positives = 296/527 (56%), Gaps = 29/527 (5%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+++       W++++  F  +  PL AI  Y  M    + + D       ++AC   +
Sbjct: 165 VFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGV-KGDEVVMIGVIQACTAAR 223

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            +     +HG ++R G    VV +T+L+  YA NG+++ A  VF  M  R+ VSW+++IS
Sbjct: 224 NVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMIS 283

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            + Q     EAL+L+  M+   +  D   LV  L +C+++G L +G  +H      GF+ 
Sbjct: 284 GFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVH------GFIV 337

Query: 224 SVY-----VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
             +     +G A +DMY+KCG+L SA  +F+ +  RD++ WN+MI   G HGRG +A++ 
Sbjct: 338 RRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTL 397

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F++M   G  PD  TF  LL   SH GLVEEG  +F  MV+ + + P  KHY CLVDL  
Sbjct: 398 FQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLA 457

Query: 339 RAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           R+G +E+A +++ TS  ++P   +W  LL  C  ++ +E+GE    N+++L+    G   
Sbjct: 458 RSGLVEEASDLL-TSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLA 516

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           L++ +YA TK  + V + RKL+K +G K  PG S IEI    H F+++D+SHP  + I  
Sbjct: 517 LVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVS 576

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
           K+ ++    + +GY        V     E+  E+  +YHSEKLAIAFGL  T  GT L I
Sbjct: 577 KVAKLDLEMRKMGYIPRTEF--VYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVI 634

Query: 517 VKNLR-------SIAY-----SRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +KNLR       +I Y      R+++VRD  R+HHF+DG+CSC DYW
Sbjct: 635 IKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 158/309 (51%), Gaps = 14/309 (4%)

Query: 68  SPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
           SP  A+  +  +  A+  RPD+ TFT  L AC R+  L   + +      +GY+  V V 
Sbjct: 89  SPASALRVFRALPPAA--RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           ++L+  YA  G +  A  VFD MP RD V+W+++++ +  A   L+A+++Y RMR + V 
Sbjct: 147 SSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVK 206

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
            D   ++ ++ +C     + MG  +H      G    V    +LVDMYAK G LD A  V
Sbjct: 207 GDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRV 266

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F  M  R+ +SW++MI G+  +G+ DEA+  F+ M  +G  PDS   +  L  CS+ G +
Sbjct: 267 FGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFL 326

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCL-----VDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           + G      +V R++       + C+     +D+Y + G L  A  + N  S  D +LW 
Sbjct: 327 KLGRSVHGFIVRRFD-------FNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWN 379

Query: 363 TLLGSCKIH 371
            ++  C  H
Sbjct: 380 AMIACCGAH 388



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 4/257 (1%)

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF-DNMPERDLVSWNSIISCYTQA 168
            LH  +I S      ++S+ L   YA  G + AA S          + +WN+II+ +++ 
Sbjct: 29  RLHALLIVSSSATHTLISS-LAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRR 87

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
                AL+++ R        D  T    LS+CA +G L  G  +   A + G+ + V+V 
Sbjct: 88  GSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           ++L+ +YA+ G +  A  VF RM +RD ++W++M+ G+   G+  +AI  +++M   G  
Sbjct: 147 SSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVK 206

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
            D +  +G++  C+    V  G    H  + R+ ++  +     LVD+Y + G L+ A  
Sbjct: 207 GDEVVMIGVIQACTAARNVRMGAS-VHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACR 265

Query: 349 VINTSSPSDPVLWRTLL 365
           V       + V W  ++
Sbjct: 266 VFGLMVHRNDVSWSAMI 282



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 137/301 (45%), Gaps = 26/301 (8%)

Query: 16  RQAHEIHGEWLLNSYAISVSSSLSYAQL------------LFNQIQNPQTQAWNSLIRAF 63
           R    +HG  L +   + V ++ S   +            +F  + +    +W+++I  F
Sbjct: 226 RMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGF 285

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           AQ+    +A+  + +M  AS  +PD+      L AC  +  L   + +HGF++R     C
Sbjct: 286 AQNGQSDEALRLFRNM-QASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC 344

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
            ++ T  +  Y+  G + +A+ +F+ + +RDL+ WN++I+C        +AL L++ M  
Sbjct: 345 -ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC-----EMGFVESVYVGNALVDMYAKC 238
             +  D  T   LLS+ +H G +  G       C     ++   E  YV   LVD+ A+ 
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLW--FGCMVNHFKITPAEKHYV--CLVDLLARS 459

Query: 239 GNLDSAFCVFSRMRKRDVLS-WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
           G ++ A  + + M+    ++ W +++ G   + + +   S    +L     PD +  L L
Sbjct: 460 GLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNIL--ELQPDDVGVLAL 517

Query: 298 L 298
           +
Sbjct: 518 V 518


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 179/465 (38%), Positives = 272/465 (58%), Gaps = 37/465 (7%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR----PDTFTFTFT 95
           YA LLF ++ +P    +N++IRA+  +   + AI  Y  ML  S       PD FTF F 
Sbjct: 64  YANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFV 123

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           +K+C  +   +  +++HG V + G +   VV  +L+  Y     ++ A  VF+ M ERD 
Sbjct: 124 VKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDA 183

Query: 156 VSWNS-------------------------------IISCYTQASFHLEALKLYERMRFE 184
           VSWN+                               I+S Y +   + +AL+ + RM+  
Sbjct: 184 VSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMV 243

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            +  D  +LV +L +CA +GAL +G ++H  A + GF+ ++ V NAL++MYAKCG++D  
Sbjct: 244 GIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEG 303

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             +F +M +RDV+SW++MIVG   HGR  EAI  F++M  A   P+ ITF+GLL  C+H 
Sbjct: 304 RRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHA 363

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRT 363
           GL+ EG+ YF  M   YN++PG++HYGCLV+L G +G+L++ALE+I       D  +W +
Sbjct: 364 GLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGS 423

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LL SC+ H N+EI  IAM++L++LE A  G+YVLL+ +YA     +GV+R RKL++S  +
Sbjct: 424 LLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSM 483

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE-EIMHRAKF 467
           K TPG S IE+ N V +F   D S P +  IYR L+  +MH+ + 
Sbjct: 484 KKTPGCSSIEVDNMVQEFASGDDSKPFSKAIYRVLKLLVMHQRRM 528



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 18/199 (9%)

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
           L ALK+ E    ED+       V +L +C ++  L     +H    +    +S ++   +
Sbjct: 5   LRALKIRE---MEDI------FVPILKNCPNIVELKK---IHAHIVKFSLSQSSFLVTKM 52

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-----MAG 286
           VD+       + A  +F R+   +   +N+MI  Y  +     AI+ +KQML        
Sbjct: 53  VDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENP 112

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
             PD  TF  ++  C+     + G +  H  V ++  K        LV++Y +   L+ A
Sbjct: 113 IFPDKFTFPFVVKSCAGLMCYDLGKQ-VHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDA 171

Query: 347 LEVINTSSPSDPVLWRTLL 365
            +V    +  D V W TL+
Sbjct: 172 HKVFEEMTERDAVSWNTLI 190


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 188/455 (41%), Positives = 264/455 (58%), Gaps = 21/455 (4%)

Query: 115 VIRSGYERCVVVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
           V+ SG     VVS N M  GY   G + AAR VF  MPER+LVSW++++    +A    E
Sbjct: 135 VLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGE 194

Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR---IACEMGFVESVYVGNA 230
           AL +++RM  E+   D   LV +L +CAH+GA+  G ++HR        G   ++ +  A
Sbjct: 195 ALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETA 254

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           LVDMY KCG ++ A+ VF  + +RDV+ WN+MI G  ++G G+ A+  F++ML  GF P+
Sbjct: 255 LVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPN 314

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
             TF+ +LC C+H G V+EG   F  M   Y +KP  +HYGCL DL GRAG +E+A E +
Sbjct: 315 ESTFIAVLCACTHTGRVDEGKRVFKSM-QDYGIKPQREHYGCLADLLGRAGNVEEA-EAL 372

Query: 351 NTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408
               P +P    W  L+ SC++H ++ +GE   K L++LE    G YV+L  +YA     
Sbjct: 373 LLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRW 432

Query: 409 EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFI 468
           E     R++++  G K   G S+IE+   VH+F+  D  HP    IY  LE+I  R + I
Sbjct: 433 EEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYALLEDIERRLQLI 492

Query: 469 GYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------- 521
           GY KD S V +     ED    + +YHSE+LA+AFG+   P G  +RIVKNLR       
Sbjct: 493 GYVKDTSQVIMDMDDEED-KGIALSYHSERLALAFGILNIPQGVPIRIVKNLRVCRDCHV 551

Query: 522 -----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                S  Y R++IVRDR R+H FRDG+CSC DYW
Sbjct: 552 HSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW 586



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 4/213 (1%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
              L  A+ +F ++      +W++++ A  ++    +A++ ++ M+     RPD      
Sbjct: 158 GGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEF-RPDVVVLVS 216

Query: 95  TLKACERVKALNKCQELHGFVIR---SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
            LKAC  + A+ + + +H ++      G    +++ T L+  Y   G +E A  VFD + 
Sbjct: 217 VLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVH 276

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
            RD+V WN++I       +   AL+L+ RM  +    +  T + +L +C H G ++ G  
Sbjct: 277 RRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKR 336

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
           + +   + G          L D+  + GN++ A
Sbjct: 337 VFKSMQDYGIKPQREHYGCLADLLGRAGNVEEA 369


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 190/540 (35%), Positives = 290/540 (53%), Gaps = 19/540 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ Y  S    L  A+++F ++      ++ S+I  +A+     +A+  +  M    +S
Sbjct: 337 LLDMY--SKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD +T T  L  C R + L++ + +H ++  +     + VS  LM  YA  G +  A  
Sbjct: 395 -PDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAEL 453

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVG 204
           VF  M  +D++SWN++I  Y++  +  EAL L+  +  E     D  T+ C+L +CA + 
Sbjct: 454 VFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLS 513

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           A + G  +H      G+    +V N+LVDMYAKCG L  A  +F  +  +D++SW  MI 
Sbjct: 514 AFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIA 573

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GYG+HG G EAI+ F QM  AG  PD I+F+ LL  CSH GLV+EG  +F++M     ++
Sbjct: 574 GYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIE 633

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
           P ++HY C+VD+  R G L KA   I N   P D  +W  LL  C+IH +V++ E   + 
Sbjct: 634 PTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEK 693

Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           + +LE  + G YVL+A IYA  +  E V R RK I   G++  PG SWIEI  +V+ FV 
Sbjct: 694 VFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVA 753

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
            D S+P+ + I   L  +  R    GY+       +     E   E++   HSEKLA+A 
Sbjct: 754 GDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEK--EEALCGHSEKLAMAL 811

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G+ ++  G  +R+ KNLR            S    R++++RD  R+H F+DG CSC  +W
Sbjct: 812 GIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 175/329 (53%), Gaps = 2/329 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F+Q++  +   WN L+   A+S     +I  +  M M+S    D++TF+   K
Sbjct: 145 LKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKM-MSSGVEMDSYTFSCVSK 203

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +   ++++N  ++LHG++++SG+     V  +L+  Y  N  +++AR VFD M ERD++S
Sbjct: 204 SFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVIS 263

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNSII+ Y       + L ++ +M F  + +D  T+V + + CA    +++G  +H    
Sbjct: 264 WNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGV 323

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +  F       N L+DMY+KCG+LDSA  VF  M  R V+S+ SMI GY   G   EA+ 
Sbjct: 324 KACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVK 383

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++M   G  PD  T   +L  C+   L++EG +  H  +   ++   I     L+D+Y
Sbjct: 384 LFEEMEEEGISPDVYTVTAVLNCCARNRLLDEG-KRVHEWIKENDMGFDIFVSNALMDMY 442

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            + G + +A  V +     D + W T++G
Sbjct: 443 AKCGSMREAELVFSEMRVKDIISWNTVIG 471



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 158/340 (46%), Gaps = 8/340 (2%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D  T    L+ C   K+L   +E+  F+  +G+     + + L   Y   G ++ A  VF
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVF 152

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D +     + WN +++   ++     ++ L+++M    V +D +T  C+  S + + ++N
Sbjct: 153 DQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVN 212

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  LH    + GF E   VGN+LV  Y K   +DSA  VF  M +RDV+SWNS+I GY 
Sbjct: 213 GGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +G  ++ +S F QML +G   D  T + +  GC+   L+  G    H    +       
Sbjct: 273 SNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLG-RAVHCFGVKACFSRED 331

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE-IAMKNLVQ 386
           +    L+D+Y + G L+ A  V    S    V + +++      R    GE + +   ++
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAG--YAREGLAGEAVKLFEEME 389

Query: 387 LEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGI 423
            E  S   Y + A +  C ++   +EG  R  + IK N +
Sbjct: 390 EEGISPDVYTVTAVLNCCARNRLLDEG-KRVHEWIKENDM 428



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 9/182 (4%)

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
           +D  TL  +L  CA   +L  G  +       GFV    +G+ L  MY  CG+L  A  V
Sbjct: 92  IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRV 151

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F +++    L WN ++      G    +I  FK+M+ +G   DS TF  +    S    V
Sbjct: 152 FDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 211

Query: 308 EEGVEYFHMMVSRYNLKPGIKHY----GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
             G E  H     Y LK G          LV  Y +  +++ A +V +  +  D + W +
Sbjct: 212 NGG-EQLH----GYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNS 266

Query: 364 LL 365
           ++
Sbjct: 267 II 268


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 195/573 (34%), Positives = 303/573 (52%), Gaps = 29/573 (5%)

Query: 3    LKKHARYVGLNKARQAHE--IHGEWLLNSYAISVSSSLSYAQL--------LFNQIQNPQ 52
            LK   R   L    Q H   I   + LN+Y  SV   + YA+L        +  +     
Sbjct: 457  LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDM-YAKLGKLDTAWDILIRFAGKD 515

Query: 53   TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
              +W ++I  + Q     +A+  +  ML   + R D    T  + AC  ++AL + Q++H
Sbjct: 516  VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI-RSDEVGLTNAVSACAGLQALKEGQQIH 574

Query: 113  GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
                 SG+   +     L+  Y+  G IE +   F+     D ++WN+++S + Q+  + 
Sbjct: 575  AQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNE 634

Query: 173  EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
            EAL+++ RM  E +  + FT    + + +    +  G  +H +  + G+     V NAL+
Sbjct: 635  EALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALI 694

Query: 233  DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
             MYAKCG++  A   F  +  ++ +SWN++I  Y  HG G EA+  F QM+ +   P+ +
Sbjct: 695  SMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHV 754

Query: 293  TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
            T +G+L  CSH GLV++G+ YF  M S Y L P  +HY C+VD+  RAG L +A E I  
Sbjct: 755  TLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQE 814

Query: 353  SS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
                 D ++WRTLL +C +H+N+EIGE A  +L++LE   +  YVLL+ +YA +K  +  
Sbjct: 815  MPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDAR 874

Query: 412  ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
              TR+ +K  G+K  PG SWIE+ N +H F V D++HP AD I+   +++  RA  IGY 
Sbjct: 875  DLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYV 934

Query: 472  KD-ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
            +D  SL+       +D +      HSEKLAI+FGL + P    + ++KNLR         
Sbjct: 935  QDCFSLLNELQHEQKDPI---IFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWI 991

Query: 522  ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               S   +R++IVRD  R+HHF  G CSC DYW
Sbjct: 992  KFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 173/347 (49%), Gaps = 13/347 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+++       WN +I+  A S + +  +F     +++    P+  TF+  L+AC    
Sbjct: 102 VFDEMPERTIFTWNKMIKELA-SRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 160

Query: 104 -ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
            A +  +++H  ++  G     VV   L+  Y+ NG ++ AR VFD +  +D  SW ++I
Sbjct: 161 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 220

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           S  ++     EA++L+  M    +    +    +LS+C  + +L +G  LH +  ++GF 
Sbjct: 221 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS 280

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
              YV NALV +Y   GNL SA  +FS M +RD +++N++I G    G G++A+  FK+M
Sbjct: 281 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 340

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
            + G  PDS T   L+  CS  G +  G +  H   ++       K  G L++LY +   
Sbjct: 341 HLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKCAD 399

Query: 343 LEKALEVINTSSPSDPVLWRTLL----------GSCKIHRNVEIGEI 379
           +E AL+    +   + VLW  +L           S +I R ++I EI
Sbjct: 400 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEI 446



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 171/326 (52%), Gaps = 2/326 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ ++     +W ++I   +++    +AI  +  M +  +  P  + F+  L AC+
Sbjct: 201 ARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGI-MPTPYAFSSVLSACK 259

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++++L   ++LHG V++ G+     V   L+  Y   G + +A  +F NM +RD V++N+
Sbjct: 260 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNT 319

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+  +Q  +  +A++L++RM  + +  D  TL  L+ +C+  G L  G  LH    ++G
Sbjct: 320 LINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG 379

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F  +  +  AL+++YAKC ++++A   F      +V+ WN M+V YG+      +   F+
Sbjct: 380 FASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR 439

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QM +    P+  T+  +L  C   G +E G E  H  + + N +        L+D+Y + 
Sbjct: 440 QMQIEEIVPNQYTYPSILKTCIRLGDLELG-EQIHSQIIKTNFQLNAYVCSVLIDMYAKL 498

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLG 366
           GKL+ A +++   +  D V W T++ 
Sbjct: 499 GKLDTAWDILIRFAGKDVVSWTTMIA 524



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/514 (22%), Positives = 230/514 (44%), Gaps = 29/514 (5%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYA--ISVSSSLSYAQLLFNQIQNPQTQAWNSL 59
           G + HA    L  A   ++I G  LLN YA    + ++L Y   L  +++N     WN +
Sbjct: 368 GQQLHAYTTKLGFASN-NKIEGA-LLNLYAKCADIETALDY--FLETEVEN--VVLWNVM 421

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           + A+   L  L+  F     +      P+ +T+   LK C R+  L   +++H  +I++ 
Sbjct: 422 LVAYGL-LDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTN 480

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
           ++    V + L+  YA  G ++ A  +      +D+VSW ++I+ YTQ +F  +AL  + 
Sbjct: 481 FQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFR 540

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           +M    +  D   L   +S+CA + AL  G  +H  AC  GF   +   NALV +Y++CG
Sbjct: 541 QMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG 600

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            ++ ++  F +    D ++WN+++ G+   G  +EA+  F +M   G   ++ TF   + 
Sbjct: 601 KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 660

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
             S    +++G +  H ++++       +    L+ +Y + G +  A +     S  + V
Sbjct: 661 AASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEV 719

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLATIYACTKD---EEGVART 414
            W  ++ +   H     G  A+ +  Q+           L+  + AC+     ++G+A  
Sbjct: 720 SWNAIINAYSKHG---FGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYF 776

Query: 415 RKLIKSNGIKTTPG--------WSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE--IMHR 464
             +    G+   P          +   + ++  +F+ +    PDA +++R L    ++H+
Sbjct: 777 ESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA-LVWRTLLSACVVHK 835

Query: 465 AKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
              IG      L+ +    S  ++  S+ Y   K
Sbjct: 836 NMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSK 869



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 143/327 (43%), Gaps = 10/327 (3%)

Query: 86  RPDTFTFTFTLKACERVK-ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
           RP+  T  + L+ C +   +L++ ++LH  +++ G +    +S  L   Y   G +  A 
Sbjct: 41  RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAF 100

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VFD MPER + +WN +I      +   E   L+ RM  E+V  +  T   +L +C   G
Sbjct: 101 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-RGG 159

Query: 205 ALNMGIF--LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           ++   +   +H      G  +S  V N L+D+Y++ G +D A  VF  +R +D  SW +M
Sbjct: 160 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 219

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I G   +    EAI  F  M + G  P    F  +L  C     +E G E  H +V +  
Sbjct: 220 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHGLVLKLG 278

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
                     LV LY   G L  A  + +  S  D V + TL+           GE AM+
Sbjct: 279 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLS---QCGYGEKAME 335

Query: 383 --NLVQLEAASAGDYVLLATIYACTKD 407
               + L+        L + + AC+ D
Sbjct: 336 LFKRMHLDGLEPDSNTLASLVVACSAD 362


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 213/607 (35%), Positives = 306/607 (50%), Gaps = 70/607 (11%)

Query: 3   LKKHARY--VGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           L+ HAR   +GL  AR   ++       + A +   S SY  LLF         A N L+
Sbjct: 43  LQAHARLAVLGLATARALPQLLAALPRLTLA-AADVSHSYPLLLFRCSNCTSAFASNHLL 101

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK-----------ACERVKALNKCQ 109
           R     L PL+        L   L R +  +FTF L            A   + +     
Sbjct: 102 RVLPHPL-PLR--------LFPRLPRRNPHSFTFLLASLSNHLDTEPAAAGSIASRFMGT 152

Query: 110 ELHGFVIRSG--------------YERC------------------VVVSTNLMRGYAAN 137
            +H   +++G              Y  C                  VV    ++ GY   
Sbjct: 153 HVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRA 212

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G++  AR VFD MP RD VSW+++I  Y +      AL +++ M  + V  +   +V  L
Sbjct: 213 GMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTAL 272

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           S+ A +G L  G F+H +   +G   SV +G AL+DMY+KCG++ +A  VF  M +RDV 
Sbjct: 273 SAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVF 332

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +WNSMI G   HG G +A+  F++ +  GF P SITF+G+L  CS  GLV+EG  YF +M
Sbjct: 333 AWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLM 392

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEI 376
             +Y+++  ++HYGC+VDL  RAG +++A+E+I     P DPVLW T+L +CK H  V++
Sbjct: 393 AEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDL 452

Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
           G      L++L+ A  G YVLLA+IYA  K  + V + RKL+ + G   + GWS +E   
Sbjct: 453 GITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHG 512

Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHS 496
            VHKF+V D +H D+  IY  L  I  R    GY  D S V       E     +   HS
Sbjct: 513 IVHKFLVGDMNHKDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKV--HAIKVHS 570

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           E+LAIA+G      G+ +RIVKNL             +  + R+++VRD  R+HH +DG 
Sbjct: 571 ERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGK 630

Query: 545 CSCGDYW 551
           CSC DYW
Sbjct: 631 CSCHDYW 637


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 189/529 (35%), Positives = 295/529 (55%), Gaps = 25/529 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQ--SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           AQ LF+++ +  + +WNSL+  F++   L     +FY     MA     +  T    + A
Sbjct: 105 AQKLFDEMPHKDSISWNSLVSGFSRIGDLGNCLRVFYTMRYEMAF--EWNELTLLSVISA 162

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
           C   KA ++   LH   ++ G E  V V    +  Y   G +++A  +F  +PE+++VSW
Sbjct: 163 CAFAKARDEGWCLHCCAVKLGMELEVKVVNAFINMYGKFGCVDSAFKLFWALPEQNMVSW 222

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218
           NS+++ +TQ     EA+  +  MR   +  D  T++ LL +C  +    +   +H +   
Sbjct: 223 NSMLAVWTQNGIPNEAVNYFNMMRVNGLFPDEATILSLLQACEKLPLGRLVEAIHGVIFT 282

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
            G  E++ +   L+++Y+K G L+ +  VF+ + K D ++  +M+ GY +HG G EAI F
Sbjct: 283 CGLNENITIATTLLNLYSKLGRLNVSHKVFAEISKPDKVALTAMLAGYAMHGHGKEAIEF 342

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           FK  +  G  PD +TF  LL  CSH GLV +G  YF +M   Y ++P + HY C+VDL G
Sbjct: 343 FKWTVREGMKPDHVTFTHLLSACSHSGLVMDGKYYFQIMSDFYRVQPQLDHYSCMVDLLG 402

Query: 339 RAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           R G L  A  +I  S P +P   +W  LLG+C+++RN+ +G+ A +NL+ L  +   +Y+
Sbjct: 403 RCGMLNDAYRLIK-SMPLEPNSGVWGALLGACRVYRNINLGKEAAENLIALNPSDPRNYI 461

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           +L+ IY+        ++ R L+K+       G S+IE GN++H+FVVDD SHPD+D I+R
Sbjct: 462 MLSNIYSAAGLWSDASKVRALMKTKVFIRNAGCSFIEHGNKIHRFVVDDYSHPDSDKIHR 521

Query: 457 KLEEIMHRAKFIGYTKD-ESLV-AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           KLEEIM + K +G+  + ES++  V      D + K    HSEK+A+AFGL  +     L
Sbjct: 522 KLEEIMRKIKEVGFVSETESILHDVDEEVKTDMINK----HSEKIALAFGLLVSNADMPL 577

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            I+KNLR            S+   R +I+RD  R+HHF DGLCSC DYW
Sbjct: 578 VIIKNLRICLDCHNTAKFVSLIEKRTIIIRDSKRFHHFSDGLCSCADYW 626



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 137/265 (51%), Gaps = 2/265 (0%)

Query: 108 CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ 167
           C+ +H  VI+S   R   +   L+  Y   G    A+ +FD MP +D +SWNS++S +++
Sbjct: 70  CRVIHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSR 129

Query: 168 ASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
                  L+++  MR+E     +  TL+ ++S+CA   A + G  LH  A ++G    V 
Sbjct: 130 IGDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVK 189

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           V NA ++MY K G +DSAF +F  + +++++SWNSM+  +  +G  +EA+++F  M + G
Sbjct: 190 VVNAFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNG 249

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
             PD  T L LL  C    L    VE  H ++    L   I     L++LY + G+L  +
Sbjct: 250 LFPDEATILSLLQACEKLPL-GRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVS 308

Query: 347 LEVINTSSPSDPVLWRTLLGSCKIH 371
            +V    S  D V    +L    +H
Sbjct: 309 HKVFAEISKPDKVALTAMLAGYAMH 333


>gi|414879360|tpg|DAA56491.1| TPA: hypothetical protein ZEAMMB73_164599 [Zea mays]
          Length = 520

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 170/419 (40%), Positives = 249/419 (59%), Gaps = 15/419 (3%)

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD MP RD+V+W S+++   +A  H  A++ Y  M    V  D F +   LSSCA   A
Sbjct: 104 VFDEMPRRDVVTWTSLLTGLARAGAHGAAVRAYHGMVASGVQPDEFAVPAALSSCAASTA 163

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L++G  +H  A  +G      V N+LV MYAK G L  A  VF  M  R  ++W ++IVG
Sbjct: 164 LDLGRSVHAAAVRLGLRPFRSVENSLVSMYAKTGALRDARAVFDAMPARCTITWTALIVG 223

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y  +GRG +++  +  M+ +G  PD +TF+GLL  CSH GLV+ G  +F  MV  Y + P
Sbjct: 224 YAQNGRGRQSLEVYADMVRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMVPVYGIAP 283

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
           G  HY C+VDL GRAG+L++A++++N SS   D  +W++LLG+C++H+N E+ E A + +
Sbjct: 284 GPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSLLGACRVHQNAELAERAAEMV 343

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
            +L+ A A  YV+L+ +Y+  +    VAR R L+K+ G+   PG SW+ +    H F V+
Sbjct: 344 WRLDPADAVPYVMLSNLYSRARRWGDVARIRALMKARGVTKEPGCSWVGVNGITHLFHVE 403

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D+ HP A  IYRK+EE+  R +  GY  D    A+     E + ++  AYHSE+LA+AFG
Sbjct: 404 DRDHPRAAEIYRKVEEMTERIRVEGYVPDTDW-ALQDEVPE-WRQRGLAYHSERLAVAFG 461

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L   P    +R+ KNLR            +  Y R++I+RD   +HH +DG CSCGDYW
Sbjct: 462 LLAVPAAAPIRVFKNLRVCGDCHTAIKMVAKVYGREIILRDANCFHHMKDGECSCGDYW 520



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 116/249 (46%), Gaps = 9/249 (3%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+++YA    +  + A+ +F+++       W SL+   A++ +   A+  Y H ++AS  
Sbjct: 86  LVDAYARLPHAGAAAARAVFDEMPRRDVVTWTSLLTGLARAGAHGAAVRAY-HGMVASGV 144

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +PD F     L +C    AL+  + +H   +R G      V  +L+  YA  G +  AR+
Sbjct: 145 QPDEFAVPAALSSCAASTALDLGRSVHAAAVRLGLRPFRSVENSLVSMYAKTGALRDARA 204

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD MP R  ++W ++I  Y Q     ++L++Y  M       D  T + LL +C+H G 
Sbjct: 205 VFDAMPARCTITWTALIVGYAQNGRGRQSLEVYADMVRSGCRPDYVTFIGLLFACSHAGL 264

Query: 206 LNMGIFLHRIACEMGFVESVYVGN----ALVDMYAKCGNLDSAFCVFSRMRKR-DVLSWN 260
           ++ G    R    M  V  +  G      +VD+  + G LD A  + +R     D   W 
Sbjct: 265 VDAGRAHFR---SMVPVYGIAPGPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVWK 321

Query: 261 SMIVGYGVH 269
           S++    VH
Sbjct: 322 SLLGACRVH 330


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 190/532 (35%), Positives = 299/532 (56%), Gaps = 24/532 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+  +  +F++++     +W ++I  +AQS    +AI  +       + + D       L
Sbjct: 415 SVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGI-KVDPMMMGSIL 473

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           +AC  +K+++  +++H + IR+G    +++   ++  Y   G +  A ++F+ + ++D+V
Sbjct: 474 EACSGLKSISLLKQVHSYAIRNGLLD-LILKNRIIDIYGECGEVCYALNIFEMLDKKDIV 532

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           +W S+++C+ +     EA+ L+ +M    +  D   LV +L + A + +L  G  +H   
Sbjct: 533 TWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFL 592

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
               F     V ++LVDMY+ CG+++ A  VF   + +DV+ W +MI   G+HG G +AI
Sbjct: 593 IRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAI 652

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             FK+ML  G  PD ++FL LL  CSH  LV+EG  Y  MMVS+Y L+P  +HY C+VDL
Sbjct: 653 YIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDL 712

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            GR+G+ E+A + I  S P +P  V+W  LLG+C+IH+N E+  IA   L++LE  + G+
Sbjct: 713 LGRSGQTEEAYKFIK-SMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGN 771

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVL++ ++A       V   R  +   G++  P  SWIEIGN VH F   D SH D+  I
Sbjct: 772 YVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAI 831

Query: 455 YRKLEEIMHRAKFIG-YTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
           + KL EI  + +  G Y +D S V   VS     D L +    HSE+LAI+FGL +T  G
Sbjct: 832 HLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHR----HSERLAISFGLISTASG 887

Query: 512 TSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           T LRI KNLR            S  + R+++VRD  R+HHF  G CSCGD+W
Sbjct: 888 TPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 153/316 (48%), Gaps = 14/316 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WNS I    Q+   L+A+  +  M     S  +++T    L+ C  +  LN  +ELH  
Sbjct: 232 SWNSAISGCVQNGMFLEALDLFRRMQSDGFSM-NSYTTVGVLQVCAELAQLNHGRELHAA 290

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           +++ G E  +  +  L+  YA  G +++A  VF  + ++D +SWNS++SCY Q   + EA
Sbjct: 291 LLKCGTEFNIQCNA-LLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEA 349

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           +  +  M       D   +V LLS+  H+G L  G  +H  A +      + + N L+DM
Sbjct: 350 IDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDM 409

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y KC +++ +  VF RMR +D +SW ++I  Y    R  EAI  F+     G   D +  
Sbjct: 410 YIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMM 469

Query: 295 LGLLCGCSHQGLVEEGVEYFHMM--VSRYNLKPGIKHY---GCLVDLYGRAGKLEKALEV 349
             +L  CS       G++   ++  V  Y ++ G+        ++D+YG  G++  AL +
Sbjct: 470 GSILEACS-------GLKSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNI 522

Query: 350 INTSSPSDPVLWRTLL 365
                  D V W +++
Sbjct: 523 FEMLDKKDIVTWTSMV 538



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 144/296 (48%), Gaps = 11/296 (3%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGY---ERCVVVSTNLMRGYAANGVIEAA 143
           P T  + + L      +A+++ ++LH   + +G    +    ++T L+  Y   G +  A
Sbjct: 53  PPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDA 112

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED----VGLDGFTLVCLLSS 199
             +FD MP R + SWN++I     +    EA+ +Y  MR  +       DG TL  +L +
Sbjct: 113 HRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKA 172

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-RDVLS 258
           C   G    G  +H +A + G   S  V NALV MYAKCG LDSA  VF  MR  RDV S
Sbjct: 173 CGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVAS 232

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WNS I G   +G   EA+  F++M   GF  +S T +G+L  C+    +  G E  H  +
Sbjct: 233 WNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRE-LHAAL 291

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNV 374
            +   +  I+    LV +Y R G ++ AL V       D + W ++L SC +   +
Sbjct: 292 LKCGTEFNIQCNALLV-MYARCGWVDSALRVFREIGDKDYISWNSML-SCYVQNRL 345


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 215/595 (36%), Positives = 320/595 (53%), Gaps = 70/595 (11%)

Query: 15  ARQA-HEIHGE----WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSP 69
           AR+A  EIH +    W +    ++    L   QLL +Q       +W SLI A++++   
Sbjct: 161 ARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRA 220

Query: 70  LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY---ERCVVV 126
            +A+  +  ML   ++ PD  T    L AC ++K L   + LH  V   G    E  VV 
Sbjct: 221 REAVGCFKTMLSHGIA-PDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVA 279

Query: 127 STNL-----------------------------MRGYAANGVIEAARSVFDNMPERDLVS 157
             ++                             + GY  +G ++ ARS+FD M  RD+++
Sbjct: 280 LIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIIT 339

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           +NS+++ Y  +    EAL L+  MR  D+ +D FT+V LL++CA +GAL  G  LH  AC
Sbjct: 340 FNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALH--AC 397

Query: 218 -EMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
            E   VE+ +Y+G AL+DMY KCG +D A  VF RM KRDV +W +MI G   +G G  A
Sbjct: 398 IEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAA 457

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F QM   GF P+S++++ +L  CSH  L+ EG  YF  M   YN+ P I+HYGC++D
Sbjct: 458 LEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMID 517

Query: 336 LYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L GR+G L++A++++ T  P  P  V+W ++L +C++H+++++ + A ++L++LE    G
Sbjct: 518 LLGRSGLLDEAMDLVKT-MPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDG 576

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            YV L  IY  ++  E  ++ R L++   +K T G+S I +  QVHKFVV DKSHP    
Sbjct: 577 VYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILE 636

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           I   LEEI HR K +GY+   S + V     E   E++   HSEKLAIAFGL        
Sbjct: 637 IIAMLEEISHRLKSLGYSPLTSQITVDVDEEEK--EQALLAHSEKLAIAFGLINLAPNLP 694

Query: 514 LRIVKNLR------------SIAYSRDLIVRDR---VRYHH--------FRDGLC 545
           + I KNLR            S  ++R++IVRDR   V +H+          DGLC
Sbjct: 695 VHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRSSCVEHHNALRSSSRLVVDGLC 749



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 194/460 (42%), Gaps = 79/460 (17%)

Query: 19  HEIHGEWLLNSYAISVSSS---LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIF 74
           H      LLNS    +      L YA  LF+++  P T  +++ +RA +++ S P +   
Sbjct: 31  HPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PSTFLFDTALRACSRAGSDPHRPFL 89

Query: 75  YYNHMLMASLSRPDTFTFTFTLK---ACERVKALNKCQELHGFVIRSGYERCV-VVSTNL 130
            +  M  A + RPD FTF F  K   +  R  +L  C  LH   +R+        VS +L
Sbjct: 90  LFRRMRRAGV-RPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSL 148

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSW-------------------------------N 159
           +  Y   G+   AR  FD +  +D V+W                                
Sbjct: 149 IHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWT 208

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           S+I+ Y++A+   EA+  ++ M    +  D  T++ +LS+CA +  L +G  LH +  E 
Sbjct: 209 SLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEK 268

Query: 220 GFVESVYVGNALVDMYAKCGN--------------------------------LDSAFCV 247
           G   S  +  AL+DMYAKCG+                                +D A  +
Sbjct: 269 GMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSL 328

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F  M  RD++++NSM+ GY   G+  EA+  F  M       D+ T + LL  C+  G +
Sbjct: 329 FDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGAL 388

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
           ++G    H  + +  ++  I     L+D+Y + G++++A  V       D   W  ++  
Sbjct: 389 QQG-RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAG 447

Query: 368 CKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLATIYACT 405
              +    +G+ A+++  Q+  +         +A + AC+
Sbjct: 448 LAFN---GMGKAALEHFYQMRCDGFQPNSVSYIAVLTACS 484


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 203/532 (38%), Positives = 293/532 (55%), Gaps = 27/532 (5%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLS-----PLQAIFYYNHMLMASLSRPDTFTFTF 94
           YA+ LF+QI  P    +NSLIRA + S S            Y  ML A    P++FT  F
Sbjct: 76  YARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAF 135

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-R 153
            LKAC    AL + Q+LH      G E    V T L+  YA    +  AR+VFD M E +
Sbjct: 136 VLKAC---TALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDK 192

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           +LV+W+S+I  Y++     EAL L+  M+   V  D  T+V ++S+CA  GAL++G ++H
Sbjct: 193 NLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVH 252

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
                 G    + +  AL+DMYAKCG ++ A  VF  M +RD  +W++MIVG  +HG  +
Sbjct: 253 AFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAE 312

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           +A+  F +ML     P+++TF+G+L  C+H GLV++G  Y+  M     ++  +++YGC+
Sbjct: 313 DALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTM-QELGIEASMENYGCM 371

Query: 334 VDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           VDL  R+G L++A   + T  P  P  V+WR LL + K    ++I E+A + L +LE  +
Sbjct: 372 VDLLCRSGLLDEAFSFV-TGMPISPNSVIWRNLLVASKSSNRIDIVELASRRLFELEPQN 430

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
             +YVLL+ +YA     + V   RK +K N +    G S IEI   +HKFVV D SHP+ 
Sbjct: 431 PENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFVVSDGSHPEI 490

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
             I   L EI  R    G+    +  AV     E+  E +   HSE+LAIA+GL  T   
Sbjct: 491 KKIRLVLREIADRVLCAGHKPWTA--AVLHDVVEEEKEVALCEHSERLAIAYGLLKTKAP 548

Query: 512 TSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             +R+VKNLR            S +Y R++IVRDRVR+H F  G CSC D+W
Sbjct: 549 HVIRVVKNLRFCPDCHEVTKIISKSYGREIIVRDRVRFHRFIGGSCSCNDFW 600


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 189/531 (35%), Positives = 298/531 (56%), Gaps = 22/531 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++  A+ +F+ +    + +WN++I  +A + +  +A+  +  M+   +   D       L
Sbjct: 169 AVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLA-AL 227

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL- 155
           +AC  +  L++ + +H  ++R G    V V+  L+  YA     + A  VF+ +  +   
Sbjct: 228 QACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTR 287

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           +SWN++I  +TQ     +A +L+ RM+ E+V  D FTLV ++ + A +       ++H  
Sbjct: 288 ISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGY 347

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           +      + VYV  AL+DMY+KCG +  A  +F   R R V++WN+MI GYG HG G  A
Sbjct: 348 SIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAA 407

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F++M   G  P+  TFL +L  CSH GLV+EG +YF  M   Y L+PG++HYG +VD
Sbjct: 408 VELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVD 467

Query: 336 LYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L GRAGKL++A   I  + P +P   ++  +LG+CK+H+NVE+ E + + + +L      
Sbjct: 468 LLGRAGKLDEAWSFIK-NMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGV 526

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            +VLLA IYA     + VAR R  ++  G++ TPGWS I++ N+VH F     +H  A  
Sbjct: 527 YHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKD 586

Query: 454 IYRKLEEIMHRAKFIGYTKD-ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
           IY +L +++   K +GY  D +S+  V        L      HSEKLAIA+GL  T  GT
Sbjct: 587 IYARLAKLIEEIKDMGYVPDTDSIHDVEDDVKAQLLNT----HSEKLAIAYGLIRTAPGT 642

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +++I KNLR            S+   R++I+RD  R+HHF+DG CSCGDYW
Sbjct: 643 TIQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 172/329 (52%), Gaps = 7/329 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML-MASLSRPDTFTFTFTLKAC 99
           A+ +F+++ +    AWN+++  +A++  P  A+     M       RPD+ T    L AC
Sbjct: 70  ARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPAC 129

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
              +AL+ C+E+H F +R+G +  V VST ++  Y   G +EAAR+VFD MP R+ VSWN
Sbjct: 130 ADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWN 189

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++I  Y       EA+ L+ RM  E V +   +++  L +C  +G L+    +H +   +
Sbjct: 190 AMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRV 249

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDVLSWNSMIVGYGVHGRGDEAISF 278
           G   +V V NAL+  YAKC   D A  VF+ +  K+  +SWN+MI+G+  +   ++A   
Sbjct: 250 GLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERL 309

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE--YFHMMVSRYNLKPGIKHYGCLVDL 336
           F +M +    PDS T + ++   +    + + ++  + H    R+ L   +     L+D+
Sbjct: 310 FARMQLENVRPDSFTLVSVIPAVAD---ISDPLQARWIHGYSIRHQLDQDVYVLTALIDM 366

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           Y + G++  A  + +++     + W  ++
Sbjct: 367 YSKCGRVSIARRLFDSARDRHVITWNAMI 395



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 115/293 (39%), Gaps = 19/293 (6%)

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           T   LL  CA    L  G  +H      G         AL +MY KC     A  VF RM
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQML--MAGFHPDSITFLGLLCGCSHQGLVEE 309
             RD ++WN+++ GY  +G    A+    +M     G  PDS+T + +L  C+    +  
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCK 369
             E  H    R  L   +     ++D Y + G +E A  V +     + V W  ++    
Sbjct: 138 CRE-VHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYA 196

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK----DEEGVARTRKLIKSNGIKT 425
            + N          +VQ E     D  +LA + AC +    DE  V R  +L+   G+ +
Sbjct: 197 DNGNATEAMALFWRMVQ-EGVDVTDASVLAALQACGELGYLDE--VRRVHELLVRVGLSS 253

Query: 426 TPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL----EEIMHRAKFIGYTKDE 474
                 + + N +       K    A  ++ +L      I   A  +G+T++E
Sbjct: 254 N-----VSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNE 301


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 185/555 (33%), Positives = 295/555 (53%), Gaps = 49/555 (8%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F  ++     +WN++I  + Q+     A+ +++ ML AS   PD FT T  L AC  ++
Sbjct: 251 MFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLR 310

Query: 104 ALNKCQELHGFVIRSGY---------------------------ERCVVVSTN------L 130
            L   +++H +++R+G                            ++ VV   N      L
Sbjct: 311 MLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTAL 370

Query: 131 MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190
           + GY   G  + AR VFD M  RD+++W ++I  Y Q   + EA++L+  M       + 
Sbjct: 371 LEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNS 430

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
            TL  +LS+CA +  L  G  +H  A      +SV V NA++ +YA+ G++  A  VF +
Sbjct: 431 HTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQ 490

Query: 251 M-RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
           +  +++ ++W SMIV    HG G++AI  F++ML  G  PD +T++G+   C+H G +++
Sbjct: 491 ICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDK 550

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSC 368
           G  Y+  M++ + + P + HY C+VDL  RAG L +A E I       D V+W +LL +C
Sbjct: 551 GKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAAC 610

Query: 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPG 428
           ++ +N ++ E+A + L+ ++  ++G Y  LA +Y+        AR  KL K   +K   G
Sbjct: 611 RVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETG 670

Query: 429 WSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFL 488
           +SW  + ++VH F  DD  HP  D I +K  E+    K  G+  D  L +V     ++  
Sbjct: 671 FSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFVPD--LNSVLHDVDDELK 728

Query: 489 EKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVR 536
           E+  + HSEKLAIAFGL +TP+ T+LRI+KNLR            S    R++IVRD  R
Sbjct: 729 EELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATR 788

Query: 537 YHHFRDGLCSCGDYW 551
           +HHFRDG CSC DYW
Sbjct: 789 FHHFRDGYCSCKDYW 803



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 173/402 (43%), Gaps = 75/402 (18%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ YA   S  L+ A+++F Q+      +W  ++    ++     A+  +  M+   L+
Sbjct: 103 LLSMYA--KSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLA 160

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P  F  T  L +C   +A    +++H FVI+ G   CV V+ +++  Y   G  E AR+
Sbjct: 161 -PSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARA 219

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR------------------FEDVG 187
           VF+ M  R   SWN+++S YT       AL ++E M                    +D+ 
Sbjct: 220 VFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMA 279

Query: 188 L--------------DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
           L              D FT+  +LS+CA++  L MG  +H      G   S  + NAL+ 
Sbjct: 280 LKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALIS 339

Query: 234 MYAKCGNLDSA----------------FC-----------------VFSRMRKRDVLSWN 260
            YAK G++++A                F                  VF  M  RDV++W 
Sbjct: 340 TYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWT 399

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           +MIVGY  +G+ DEA+  F+ M+ +G  P+S T   +L  C+    +  G +  H    R
Sbjct: 400 AMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQ-IHCRAIR 458

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
              +  +     ++ +Y R+G +  A  V       D + WR
Sbjct: 459 SLQEQSVSVSNAIITVYARSGSVPLARRVF------DQICWR 494



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 124/262 (47%), Gaps = 33/262 (12%)

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
            +L+  YA +G +  AR VF  MPERD VSW  ++    +A    +A+K +  M  E + 
Sbjct: 101 NSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLA 160

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
              F L  +LSSCA   A  +G  +H    ++G    V V N+++ MY KCG+ ++A  V
Sbjct: 161 PSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAV 220

Query: 248 FSRMR-------------------------------KRDVLSWNSMIVGYGVHGRGDEAI 276
           F RM+                               +R ++SWN++I GY  +G  D A+
Sbjct: 221 FERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMAL 280

Query: 277 SFFKQMLMA-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
            FF +ML A    PD  T   +L  C++  +++ G +  H  + R  +    +    L+ 
Sbjct: 281 KFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQ-MHSYILRTGMPYSSQIMNALIS 339

Query: 336 LYGRAGKLEKALEVINTSSPSD 357
            Y ++G +E A  +++ +  +D
Sbjct: 340 TYAKSGSVETARRIMDKAVVAD 361



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 1/142 (0%)

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           + +  N+L+ MYAK G L  A  VF++M +RD +SW  M+VG    GR  +A+  F  M+
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  P       +L  C+       G    H  V +  L   +     ++ +YG+ G  
Sbjct: 156 GEGLAPSQFMLTNVLSSCAATEARGIG-RKVHSFVIKLGLSSCVPVANSVLYMYGKCGDA 214

Query: 344 EKALEVINTSSPSDPVLWRTLL 365
           E A  V           W  ++
Sbjct: 215 ETARAVFERMKVRSESSWNAMV 236



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 10/116 (8%)

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM------RKRDVLSWNSM 262
           G  +H  A + G + S Y+ N L+  YA+ G     F    R+       +R+  +WNS+
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           +  Y   GR  +A   F QM       D++++  ++ G +  G   + V+ F  MV
Sbjct: 104 LSMYAKSGRLADARVVFAQMP----ERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  337 bits (864), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 185/554 (33%), Positives = 305/554 (55%), Gaps = 35/554 (6%)

Query: 18  AHEIHGEWLLNSYAISVSSSLSYAQL--LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFY 75
           A E+  E    + ++   S LS   +  +F  +      +WN++I   A++    + +  
Sbjct: 167 AGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRM 226

Query: 76  YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135
              M  A+L +PD+FT +  L        +++ +E+HG  IR G +  + V+++L+  YA
Sbjct: 227 IREMGGANL-KPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYA 285

Query: 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
               +  +  VF  + ERD +SWNSII+   Q     E L+ + +M    +    ++   
Sbjct: 286 KCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSS 345

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           ++ +CAH+  L++G  LH      GF E++++ ++LVDMYAKCGN+ +A  +F RMR RD
Sbjct: 346 IMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRD 405

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           ++SW +MI+G  +HG+  +AI  F+QM   G          +L  CSH GLV+E  +YF+
Sbjct: 406 MVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFN 458

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS--SPSDPVLWRTLLGSCKIHRN 373
            M   + + PG++HY  + DL GRAG+LE+A + I      P+  + W TLL +C++H+N
Sbjct: 459 SMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSI-WATLLSACRVHKN 517

Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIE 433
           +++ E     +++++  + G Y+LLA IY+  +  +  A+ R  ++  GI+ TP  SWIE
Sbjct: 518 IDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIE 577

Query: 434 IGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA 493
           + N+V+ F+  D+SHP  + I   +E ++   +  GY  D S V        D  E+   
Sbjct: 578 VKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEV------HHDVEEEQKK 631

Query: 494 Y----HSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRY 537
           Y    HSE+LAI FG+  TP G ++R+ KNLR            S    R+++VRD  R+
Sbjct: 632 YLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRF 691

Query: 538 HHFRDGLCSCGDYW 551
           HHF++G CSCGDYW
Sbjct: 692 HHFKNGTCSCGDYW 705



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 170/360 (47%), Gaps = 34/360 (9%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LFN I  P   AW S+IR +     P Q++  +  ML + L  PD   F   LK+C  + 
Sbjct: 62  LFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLY-PDHNVFPSVLKSCALLM 120

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE---------------------- 141
            LN  + LHG++IR G +  +     LM  Y+    +E                      
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 142 ----------AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191
                     + R +F+ MPE+DLVSWN+II+   +   + E L++   M   ++  D F
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           TL  +L   A    ++ G  +H  +   G    +YV ++L+DMYAKC  +  +  VF+ +
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
            +RD +SWNS+I G   +G  DE + FF+QMLMA   P S +F  ++  C+H   +  G 
Sbjct: 301 TERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 360

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +  H  ++R      I     LVD+Y + G +  A ++ +     D V W  ++  C +H
Sbjct: 361 Q-LHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALH 419



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 126/299 (42%), Gaps = 34/299 (11%)

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161
           +K+ ++ Q+LH  V++      +   + L+  Y+   ++  +  +F+ +     ++W S+
Sbjct: 19  IKSRSQAQQLHAQVLKF-QASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSV 77

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           I CYT      ++L  +  M    +  D      +L SCA +  LN+G  LH     +G 
Sbjct: 78  IRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGL 137

Query: 222 VESVYVGNALVDMYAKCGNL--------------------------------DSAFCVFS 249
              +Y GNAL++MY+K   L                                DS   +F 
Sbjct: 138 DFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFE 197

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            M ++D++SWN++I G   +G  +E +   ++M  A   PDS T   +L   +    +  
Sbjct: 198 MMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISR 257

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
           G E  H    R  L   I     L+D+Y +  ++  +  V    +  D + W +++  C
Sbjct: 258 GKE-IHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGC 315


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  337 bits (864), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 195/573 (34%), Positives = 303/573 (52%), Gaps = 29/573 (5%)

Query: 3    LKKHARYVGLNKARQAHE--IHGEWLLNSYAISVSSSLSYAQL--------LFNQIQNPQ 52
            LK   R   L    Q H   I   + LN+Y  SV   + YA+L        +  +     
Sbjct: 497  LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDM-YAKLGKLDTAWDILIRFAGKD 555

Query: 53   TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
              +W ++I  + Q     +A+  +  ML   + R D    T  + AC  ++AL + Q++H
Sbjct: 556  VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI-RSDEVGLTNAVSACAGLQALKEGQQIH 614

Query: 113  GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
                 SG+   +     L+  Y+  G IE +   F+     D ++WN+++S + Q+  + 
Sbjct: 615  AQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNE 674

Query: 173  EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
            EAL+++ RM  E +  + FT    + + +    +  G  +H +  + G+     V NAL+
Sbjct: 675  EALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALI 734

Query: 233  DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
             MYAKCG++  A   F  +  ++ +SWN++I  Y  HG G EA+  F QM+ +   P+ +
Sbjct: 735  SMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHV 794

Query: 293  TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
            T +G+L  CSH GLV++G+ YF  M S Y L P  +HY C+VD+  RAG L +A E I  
Sbjct: 795  TLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQE 854

Query: 353  SS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
                 D ++WRTLL +C +H+N+EIGE A  +L++LE   +  YVLL+ +YA +K  +  
Sbjct: 855  MPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDAR 914

Query: 412  ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
              TR+ +K  G+K  PG SWIE+ N +H F V D++HP AD I+   +++  RA  IGY 
Sbjct: 915  DLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYV 974

Query: 472  KD-ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
            +D  SL+       +D +      HSEKLAI+FGL + P    + ++KNLR         
Sbjct: 975  QDCFSLLNELQHEQKDPI---IFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWI 1031

Query: 522  ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               S   +R++IVRD  R+HHF  G CSC DYW
Sbjct: 1032 KFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 173/347 (49%), Gaps = 13/347 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+++       WN +I+  A S + +  +F     +++    P+  TF+  L+AC    
Sbjct: 142 VFDEMPERTIFTWNKMIKELA-SRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 200

Query: 104 -ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
            A +  +++H  ++  G     VV   L+  Y+ NG ++ AR VFD +  +D  SW ++I
Sbjct: 201 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 260

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           S  ++     EA++L+  M    +    +    +LS+C  + +L +G  LH +  ++GF 
Sbjct: 261 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS 320

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
              YV NALV +Y   GNL SA  +FS M +RD +++N++I G    G G++A+  FK+M
Sbjct: 321 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 380

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
            + G  PDS T   L+  CS  G +  G +  H   ++       K  G L++LY +   
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKCAD 439

Query: 343 LEKALEVINTSSPSDPVLWRTLL----------GSCKIHRNVEIGEI 379
           +E AL+    +   + VLW  +L           S +I R ++I EI
Sbjct: 440 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEI 486



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 171/326 (52%), Gaps = 2/326 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ ++     +W ++I   +++    +AI  +  M +  +  P  + F+  L AC+
Sbjct: 241 ARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGI-MPTPYAFSSVLSACK 299

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++++L   ++LHG V++ G+     V   L+  Y   G + +A  +F NM +RD V++N+
Sbjct: 300 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNT 359

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+  +Q  +  +A++L++RM  + +  D  TL  L+ +C+  G L  G  LH    ++G
Sbjct: 360 LINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG 419

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F  +  +  AL+++YAKC ++++A   F      +V+ WN M+V YG+      +   F+
Sbjct: 420 FASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR 479

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           QM +    P+  T+  +L  C   G +E G E  H  + + N +        L+D+Y + 
Sbjct: 480 QMQIEEIVPNQYTYPSILKTCIRLGDLELG-EQIHSQIIKTNFQLNAYVCSVLIDMYAKL 538

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLG 366
           GKL+ A +++   +  D V W T++ 
Sbjct: 539 GKLDTAWDILIRFAGKDVVSWTTMIA 564



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/514 (22%), Positives = 230/514 (44%), Gaps = 29/514 (5%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYA--ISVSSSLSYAQLLFNQIQNPQTQAWNSL 59
           G + HA    L  A   ++I G  LLN YA    + ++L Y   L  +++N     WN +
Sbjct: 408 GQQLHAYTTKLGFASN-NKIEGA-LLNLYAKCADIETALDY--FLETEVEN--VVLWNVM 461

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           + A+   L  L+  F     +      P+ +T+   LK C R+  L   +++H  +I++ 
Sbjct: 462 LVAYGL-LDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTN 520

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
           ++    V + L+  YA  G ++ A  +      +D+VSW ++I+ YTQ +F  +AL  + 
Sbjct: 521 FQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFR 580

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           +M    +  D   L   +S+CA + AL  G  +H  AC  GF   +   NALV +Y++CG
Sbjct: 581 QMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG 640

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            ++ ++  F +    D ++WN+++ G+   G  +EA+  F +M   G   ++ TF   + 
Sbjct: 641 KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 700

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
             S    +++G +  H ++++       +    L+ +Y + G +  A +     S  + V
Sbjct: 701 AASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEV 759

Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLATIYACTKD---EEGVART 414
            W  ++ +   H     G  A+ +  Q+           L+  + AC+     ++G+A  
Sbjct: 760 SWNAIINAYSKHG---FGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYF 816

Query: 415 RKLIKSNGIKTTPG--------WSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE--IMHR 464
             +    G+   P          +   + ++  +F+ +    PDA +++R L    ++H+
Sbjct: 817 ESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA-LVWRTLLSACVVHK 875

Query: 465 AKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
              IG      L+ +    S  ++  S+ Y   K
Sbjct: 876 NMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSK 909



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 143/327 (43%), Gaps = 10/327 (3%)

Query: 86  RPDTFTFTFTLKACERVK-ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
           RP+  T  + L+ C +   +L++ ++LH  +++ G +    +S  L   Y   G +  A 
Sbjct: 81  RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAF 140

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VFD MPER + +WN +I      +   E   L+ RM  E+V  +  T   +L +C   G
Sbjct: 141 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-RGG 199

Query: 205 ALNMGIF--LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           ++   +   +H      G  +S  V N L+D+Y++ G +D A  VF  +R +D  SW +M
Sbjct: 200 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 259

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I G   +    EAI  F  M + G  P    F  +L  C     +E G E  H +V +  
Sbjct: 260 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHGLVLKLG 318

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
                     LV LY   G L  A  + +  S  D V + TL+           GE AM+
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLS---QCGYGEKAME 375

Query: 383 --NLVQLEAASAGDYVLLATIYACTKD 407
               + L+        L + + AC+ D
Sbjct: 376 LFKRMHLDGLEPDSNTLASLVVACSAD 402


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  337 bits (864), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 188/530 (35%), Positives = 290/530 (54%), Gaps = 21/530 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F ++      +W+++I AFA++    +AI +Y+ M +  + RP+ +TF   L 
Sbjct: 271 LDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGV-RPNYYTFASVLL 329

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  V  L   + +H  ++ +GY+  +V  T L+  Y + G ++ ARS+FD +  RD   
Sbjct: 330 ACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGL 389

Query: 158 WNSIISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           W  +I  Y++       L+LY  M+    V        C++S+CA +GA       H   
Sbjct: 390 WTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDI 449

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              G +    +  +LV+MY++ GNL+SA  VF +M  RD L+W ++I GY  HG    A+
Sbjct: 450 EADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLAL 509

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             +K+M + G  P  +TF+ +L  CSH GL E+G + F  + S Y + P I HY C++DL
Sbjct: 510 GLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDL 569

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
             RAG+L  A E+IN + P +P  V W +LLG+ +IH++V+    A   + +L+      
Sbjct: 570 LSRAGRLSDAEELIN-AMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPAS 628

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ ++A T +  G+A  R  + + G+K   G SWIE+ +Q+H+F V D SHP    I
Sbjct: 629 YVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEI 688

Query: 455 YRKLEEIMHRAKFIGYTKD-ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           + +L+ +  + K  GY  + E ++   G   ++ L +    HSEKLAIAFGL  T  GT+
Sbjct: 689 FAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLR---LHSEKLAIAFGLIATAPGTT 745

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LRI   LR            S    R++IVRD  R+H FRDG CSCGDYW
Sbjct: 746 LRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 173/331 (52%), Gaps = 9/331 (2%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S++ A+  F+ I      +W S++ A+AQ+     A+  Y  M +    +P+   +T  L
Sbjct: 73  SVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMDL----QPNPVVYTTVL 128

Query: 97  KACERVKALNKCQELHGFVIRS-GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
            AC  +KAL + + +H  +  + G +  V++  +L+  YA  G +E A+ +F+ M  R +
Sbjct: 129 GACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSV 188

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
            SWN++I+ Y Q+    EA++LYE M   DV     T   +LS+C+++G L+ G  +H +
Sbjct: 189 SSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHAL 245

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
               G    + + NAL+ MYA+C  LD A  +F R+ +RDV+SW++MI  +      DEA
Sbjct: 246 ISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEA 305

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           I F+ +M + G  P+  TF  +L  C+  G +  G    H  +     K  + +   LVD
Sbjct: 306 IEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAG-RAVHDQILGNGYKITLVNGTALVD 364

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           LY   G L++A  + +     D  LW  L+G
Sbjct: 365 LYTSYGSLDEARSLFDQIENRDEGLWTVLIG 395



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 176/370 (47%), Gaps = 7/370 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A+ LF ++      +WN++I A+AQS    +AI  Y  M +     P   TFT  L
Sbjct: 172 SLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDV----EPSVRTFTSVL 227

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  +  L++ +++H  +   G E  + +   L+  YA    ++ A  +F  +P RD+V
Sbjct: 228 SACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVV 287

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW+++I+ + +     EA++ Y +M+ E V  + +T   +L +CA VG L  G  +H   
Sbjct: 288 SWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQI 347

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              G+  ++  G ALVD+Y   G+LD A  +F ++  RD   W  +I GY   G     +
Sbjct: 348 LGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVL 407

Query: 277 SFFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
             +++M      P + I +  ++  C+  G   +  +  H  +    +         LV+
Sbjct: 408 ELYREMKNTTKVPATKIIYSCVISACASLGAFADARQA-HSDIEADGMISDFVLATSLVN 466

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           +Y R G LE A +V +  S  D + W TL+     H    +  + +   ++LE A   + 
Sbjct: 467 MYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLA-LGLYKEMELEGAEPSEL 525

Query: 396 VLLATIYACT 405
             +  +YAC+
Sbjct: 526 TFMVVLYACS 535



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 156/333 (46%), Gaps = 20/333 (6%)

Query: 104 ALNKCQELHGFVIRSGYERC-------VVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           AL +CQ+L    +R  ++R        V +   ++R Y   G + +AR+ FD +  ++  
Sbjct: 33  ALRQCQDLES--VRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDY 90

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH-RI 215
           SW S+++ Y Q   +  AL LY+RM   D+  +      +L +CA + AL  G  +H RI
Sbjct: 91  SWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIHSRI 147

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           +   G    V + N+L+ MYAKCG+L+ A  +F RM  R V SWN+MI  Y   G  +EA
Sbjct: 148 SGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEA 207

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           I  ++ M      P   TF  +L  CS+ GL+++G +  H ++S    +  +     L+ 
Sbjct: 208 IRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRK-IHALISSRGTELDLSLQNALLT 263

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           +Y R   L+ A ++       D V W  ++ +     ++    I   + +QLE      Y
Sbjct: 264 MYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFA-ETDLFDEAIEFYSKMQLEGVRPNYY 322

Query: 396 VLLATIYACTK--DEEGVARTRKLIKSNGIKTT 426
              + + AC    D          I  NG K T
Sbjct: 323 TFASVLLACASVGDLRAGRAVHDQILGNGYKIT 355



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 123/269 (45%), Gaps = 16/269 (5%)

Query: 16  RQAHEIHGEWLLNSYAISVSS------------SLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           R    +H + L N Y I++ +            SL  A+ LF+QI+N     W  LI  +
Sbjct: 338 RAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGY 397

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           ++       +  Y  M   +        ++  + AC  + A    ++ H  +   G    
Sbjct: 398 SKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISD 457

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
            V++T+L+  Y+  G +E+AR VFD M  RD ++W ++I+ Y +   H  AL LY+ M  
Sbjct: 458 FVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMEL 517

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMG--IFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           E       T + +L +C+H G    G  +F+  I  +     ++   + ++D+ ++ G L
Sbjct: 518 EGAEPSELTFMVVLYACSHAGLQEQGKQLFIS-IQSDYAMHPNIAHYSCIIDLLSRAGRL 576

Query: 242 DSAFCVFSRMR-KRDVLSWNSMIVGYGVH 269
             A  + + M  + + ++W+S++    +H
Sbjct: 577 SDAEELINAMPVEPNDVTWSSLLGASRIH 605


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 194/551 (35%), Positives = 298/551 (54%), Gaps = 26/551 (4%)

Query: 20  EIHGEWLLNSYAISVSSSLSY---AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYY 76
           E  G+  +N+  I + SSL     A+ +F+++++    +W ++I +      P +A+  Y
Sbjct: 329 EFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETY 388

Query: 77  NHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136
             M +  +  PD  T    L AC  +  L+    LH   I++G    V+VS +L+  Y+ 
Sbjct: 389 KMMELEGI-LPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSK 447

Query: 137 NGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCL 196
              ++ A  VF N+  +++VSW S+I      +   EAL  + +M+ E +  +  TL+ +
Sbjct: 448 CKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISV 506

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           LS+CA +GAL  G  +H  A   G     ++ NA++DMY +CG    A   F+  +K+DV
Sbjct: 507 LSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDV 565

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
            +WN ++ GY   G+   A+  F +ML    HPD ITF+ LLC CS  G+V EG+EYF++
Sbjct: 566 TAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNI 625

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVE 375
           M ++YNL P +KHY C+VD+ GRAG+L+ A + I +     D  +W  LL +C+IHRNVE
Sbjct: 626 MKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVE 685

Query: 376 IGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIG 435
           +GEIA K + + +  S G Y+LL  +YA   + + V++ R L++  G+   PG SW+EI 
Sbjct: 686 LGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIK 745

Query: 436 NQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK-DESLVAVSGSSSEDFLEKSSAY 494
            +VH F+  D SH  +  I   L+    + K  G+     S  +   SS  D        
Sbjct: 746 GKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSRADIF----CG 801

Query: 495 HSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRD 542
           HSE+ AIAFGL  T  G  + + KNL             S    R++ VRD   YHHF+D
Sbjct: 802 HSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKD 861

Query: 543 GLCSCGD--YW 551
           G+CSCGD  YW
Sbjct: 862 GVCSCGDEGYW 872



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 199/373 (53%), Gaps = 13/373 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +S A++LF+++      +WN++I  + ++   L+ +  ++ M   S+  PD  T T    
Sbjct: 249 ISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVD-PDLITMTTVAS 307

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           ACE +      + +HG+V++S +   + ++ +L++ Y++ G +E A +VF  M  +D+VS
Sbjct: 308 ACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVS 367

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++I+         +A++ Y+ M  E +  D  TLV +LS+CA +G L++GI LH IA 
Sbjct: 368 WTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAI 427

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G V  V V N+L+DMY+KC  +D+A  VF  +  ++V+SW S+I+G  ++ R  EA+ 
Sbjct: 428 KTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALL 487

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL---- 333
           FF+QM      P+S+T + +L  C+  G +  G E     +  + L+ G+   G L    
Sbjct: 488 FFRQM-KESMKPNSVTLISVLSACARIGALMRGKE-----IHAHALRTGVGFDGFLPNAI 541

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           +D+Y R G+   AL   N S   D   W  LL         ++       +++LE     
Sbjct: 542 LDMYVRCGRKVPALNQFN-SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE-IHPD 599

Query: 394 DYVLLATIYACTK 406
           +   ++ + AC+K
Sbjct: 600 EITFISLLCACSK 612



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 198/391 (50%), Gaps = 10/391 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  +F ++      +WN L+  +A++    +A+  Y+ ML A + RP+ +TF   LK C 
Sbjct: 151 AWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEI-RPNVYTFPSVLKTCA 209

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            V  + + +E+H  VIR G+E  V V   L+  Y   G I  AR +FD MP+RD +SWN+
Sbjct: 210 GVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNA 269

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y +    LE L+L+  MR   V  D  T+  + S+C  +    +G  +H    +  
Sbjct: 270 MISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSE 329

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F   + + N+L+ MY+  G L+ A  VFSRM  +DV+SW +MI     H    +A+  +K
Sbjct: 330 FGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYK 389

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            M + G  PD IT + +L  C+  G ++ G+   H +  +  L   +     L+D+Y + 
Sbjct: 390 MMELEGILPDEITLVSVLSACACIGHLDLGIR-LHEIAIKTGLVSHVIVSNSLIDMYSKC 448

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKI-HRNVEIGEIAMKNLVQL-EAASAGDYVLL 398
             ++ ALEV    S  + V W +L+   +I +R+ E    A+    Q+ E+       L+
Sbjct: 449 KCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFE----ALLFFRQMKESMKPNSVTLI 504

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           + + AC +   G     K I ++ ++T  G+
Sbjct: 505 SVLSACARI--GALMRGKEIHAHALRTGVGF 533



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 147/312 (47%), Gaps = 6/312 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+ CE  +A ++   ++  V  S    CV +   L+  +   G +  A  VF  M ERD+
Sbjct: 104 LRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDV 163

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
            SWN ++  Y +A    EAL LY RM + ++  + +T   +L +CA V  +  G  +H  
Sbjct: 164 FSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAH 223

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
               GF   V VGNAL+ MY KCG++ +A  +F +M KRD +SWN+MI GY  +G G E 
Sbjct: 224 VIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEG 283

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCS--HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           +  F  M      PD IT   +   C       +  GV   H  V +      I     L
Sbjct: 284 LELFSMMRELSVDPDLITMTTVASACELLDNERLGRGV---HGYVVKSEFGGDISMNNSL 340

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           + +Y   G+LE+A  V +     D V W  ++ S   H+ +    +    +++LE     
Sbjct: 341 IQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHK-LPFKAVETYKMMELEGILPD 399

Query: 394 DYVLLATIYACT 405
           +  L++ + AC 
Sbjct: 400 EITLVSVLSACA 411



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           +A+K  E M    + ++    + LL  C    A + G  ++ +         V +GNAL+
Sbjct: 80  QAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALL 139

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
            M+ + GNL  A+ VF +M +RDV SWN ++ GY   G  DEA++ + +ML A   P+  
Sbjct: 140 SMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVY 199

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TF  +L  C+    +  G E  H  V R+  +  +     L+ +Y + G +  A  + + 
Sbjct: 200 TFPSVLKTCAGVSDIARGKE-IHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDK 258

Query: 353 SSPSDPVLWRTLL 365
               D + W  ++
Sbjct: 259 MPKRDRISWNAMI 271


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 190/546 (34%), Positives = 296/546 (54%), Gaps = 26/546 (4%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA      + Y    F  +      +W ++I  +AQ+   L+AI  +  + + 
Sbjct: 387 GNTLVDMYA--KCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVK 444

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +   D       L+AC  +K+ N  +E+HG+V +      +++   ++  Y   G I+ 
Sbjct: 445 GMD-VDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLAD-IMLQNAIVNVYGEVGHIDY 502

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR  F+++  +D+VSW S+I+C       +EAL+L+  ++  ++  D   ++  LS+ A+
Sbjct: 503 ARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATAN 562

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + +L  G  +H      GF     + ++LVDMYA CG ++++  +F  +++RD++ W SM
Sbjct: 563 LSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSM 622

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I   G+HG G++AI+ FK+M      PD ITFL LL  CSH GL+ EG  +F +M   Y 
Sbjct: 623 INANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQ 682

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           L+P  +HY C+VDL  R+  LE+A   + N        +W  LLG+C IH N E+GE+A 
Sbjct: 683 LEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAA 742

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           K L+Q +  ++G Y L++ I+A       V   R  +K NG+K  PG SWIE+ N++H F
Sbjct: 743 KELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTF 802

Query: 442 VVDDKSHPDADMIYRKLEE----IMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSE 497
           +  DKSHP  D IY KL +    +  +  +I  TK      V  + SE+   +    HSE
Sbjct: 803 MARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTK-----FVFHNVSEEEKTQMLYGHSE 857

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           +LA+ +GL  TP GT +RI KNLR            S    R L+VRD  R+HHF  GLC
Sbjct: 858 RLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLC 917

Query: 546 SCGDYW 551
           SCGD+W
Sbjct: 918 SCGDFW 923



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 173/371 (46%), Gaps = 5/371 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL  A  +F+++      +WN+L+ AF  S   L+AI  Y  M +  ++  D  TF   L
Sbjct: 94  SLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVA-IDACTFPSVL 152

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN--MPERD 154
           KAC  +       E+HG  ++ GY   V V   L+  Y   G +  AR +FD   M + D
Sbjct: 153 KACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKED 212

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            VSWNSIIS +      LEAL L+ RM+   V  + +T V  L        + +G+ +H 
Sbjct: 213 TVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHG 272

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              +      VYV NAL+ MYAKCG ++ A  VF  M  RD +SWN+++ G   +    +
Sbjct: 273 AVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSD 332

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+++F+ M  +G  PD ++ L L+      G + +G E  H    R  L   ++    LV
Sbjct: 333 ALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKE-VHAYAIRNGLDSNMQIGNTLV 391

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           D+Y +   ++            D + W T++          +  I +   VQ++      
Sbjct: 392 DMYAKCCCVKYMGHAFECMHEKDLISWTTIIAG-YAQNEFHLEAINLFRKVQVKGMDVDP 450

Query: 395 YVLLATIYACT 405
            ++ + + AC+
Sbjct: 451 MMIGSVLRACS 461



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 142/275 (51%), Gaps = 5/275 (1%)

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
           +  L  C   KAL + Q+LH  +++S       ++T L+  Y   G +  A  VFD M E
Sbjct: 50  SLLLDLCVAAKALPQGQQLHALLLKSHLS--AFLATKLVLMYGKCGSLRDAVKVFDEMSE 107

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           R + SWN+++  +  +  +LEA++LY+ MR   V +D  T   +L +C  +G   +G  +
Sbjct: 108 RTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEI 167

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHG 270
           H +A + G+ E V+V NAL+ MY KCG+L  A  +F    M K D +SWNS+I  +   G
Sbjct: 168 HGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEG 227

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
              EA+S F++M   G   ++ TF+  L G      V+ G+   H  V + N    +   
Sbjct: 228 NCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMG-IHGAVLKSNHFADVYVA 286

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             L+ +Y + G++E A  V  +    D V W TLL
Sbjct: 287 NALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLL 321



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 180/381 (47%), Gaps = 20/381 (5%)

Query: 11  GLNKARQAHEIHGEWLLNSYAISV------------SSSLSYAQLLFNQI--QNPQTQAW 56
            L ++R   EIHG  +   Y   V               L  A++LF+ I  +   T +W
Sbjct: 157 ALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSW 216

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
           NS+I A     + L+A+  +  M    ++  +T+TF   L+  E    +     +HG V+
Sbjct: 217 NSIISAHVAEGNCLEALSLFRRMQEVGVA-SNTYTFVAALQGVEDPSFVKLGMGIHGAVL 275

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
           +S +   V V+  L+  YA  G +E A  VF++M  RD VSWN+++S   Q   + +AL 
Sbjct: 276 KSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALN 335

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
            +  M+      D  +++ L+++    G L  G  +H  A   G   ++ +GN LVDMYA
Sbjct: 336 YFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYA 395

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           KC  +      F  M ++D++SW ++I GY  +    EAI+ F+++ + G   D +    
Sbjct: 396 KCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGS 455

Query: 297 LLCGCSHQGLVEEG-VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
           +L  CS  GL     +   H  V + +L   I     +V++YG  G ++ A     +   
Sbjct: 456 VLRACS--GLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHIDYARRAFESIRS 512

Query: 356 SDPVLWRTLLGSCKIHRNVEI 376
            D V W +++ +C +H  + +
Sbjct: 513 KDIVSWTSMI-TCCVHNGLPV 532


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 188/551 (34%), Positives = 293/551 (53%), Gaps = 55/551 (9%)

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQE 110
           P   +WN ++  F +S    +A+  +  M       PD  T +  L +    + LN  ++
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFC-PDQVTVSSVLPSVGDSENLNMGRQ 273

Query: 111 LHGFVIRSGY--ERCVV-----------------------------VSTNLMRGYAANGV 139
           +HG+VI+ G   ++CV+                             V    + G + NG+
Sbjct: 274 IHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGL 333

Query: 140 IEAARSVF----DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
           ++ A  +F    +   E ++VSW SII+   Q    +EAL+L+  M+   V  +  T+  
Sbjct: 334 VDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPS 393

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L +C ++ AL  G   H  A  +  ++ V+VG+AL+DMYAKCG +  +  VF+ M  ++
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKN 453

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           ++ WNS++ GY +HG+  E +S F+ ++     PD I+F  LL  C   GL +EG +YF+
Sbjct: 454 LVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFN 513

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNV 374
           MM   Y +KP ++HY C+V+L GRAGKL++A ++I       D  +W  LL SC++  NV
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNV 573

Query: 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEI 434
           ++ EIA + L  LE  + G YVL++ IYA       V   R  ++S G+K  PG SWI++
Sbjct: 574 DLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 435 GNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK--DESLVAVSGSSSEDFLEKSS 492
            N+V+  +  DKSHP  D I  K++EI    +  G+    D +L  V     E  L    
Sbjct: 634 KNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWG-- 691

Query: 493 AYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHF 540
             HSEKLA+ FGL  TPDGT L+++KNLR            S    R++ +RD  R+HHF
Sbjct: 692 --HSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHF 749

Query: 541 RDGLCSCGDYW 551
           +DG+CSCGD+W
Sbjct: 750 KDGICSCGDFW 760



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 165/401 (41%), Gaps = 72/401 (17%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A L+   I +P   +++SLI A  ++    Q+I  ++ M    L  PDT       K C 
Sbjct: 69  ADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLI-PDTHVLPNLFKVCA 127

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD------ 154
            + A    +++H     SG +    V  +L   Y   G +  AR VFD M E+D      
Sbjct: 128 ELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSA 187

Query: 155 -----------------------------LVSWNSIISCYTQASFHLEALKLYERMRFED 185
                                        +VSWN I+S + ++ +H EA+ ++++M    
Sbjct: 188 LLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLG 247

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN----- 240
              D  T+  +L S      LNMG  +H    + G ++   V +A++DMY K G+     
Sbjct: 248 FCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGII 307

Query: 241 --------------------------LDSAFCVFSRMRKR----DVLSWNSMIVGYGVHG 270
                                     +D A  +F   +++    +V+SW S+I G   +G
Sbjct: 308 KLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNG 367

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
           +  EA+  F++M +AG  P+ +T   +L  C +   +  G    H    R +L   +   
Sbjct: 368 KDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHG-RSTHGFAVRVHLLDDVHVG 426

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
             L+D+Y + G+++ +  V N     + V W +L+    +H
Sbjct: 427 SALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMH 467



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 104/211 (49%)

Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
           K  + H  +++SG +    +S  L+  Y+       A  +  ++P+  + S++S+I   T
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALT 92

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
           +A    +++ ++ RM    +  D   L  L   CA + A   G  +H +AC  G     +
Sbjct: 93  KAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAF 152

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           V  +L  MY +CG +  A  VF RM ++DV++ ++++ GY   G  +E +    +M  +G
Sbjct: 153 VQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSG 212

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
             P+ +++ G+L G +  G  +E V  F  M
Sbjct: 213 IEPNIVSWNGILSGFNRSGYHKEAVIMFQKM 243



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 110/232 (47%), Gaps = 3/232 (1%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93
           V  +L    L   Q       +W S+I   AQ+   ++A+  +  M +A + +P+  T  
Sbjct: 334 VDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGV-KPNRVTIP 392

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
             L AC  + AL   +  HGF +R      V V + L+  YA  G I+ ++ VF+ MP +
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTK 452

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFL 212
           +LV WNS+++ Y+      E + ++E +    +  D  +   LLS+C  VG  + G  + 
Sbjct: 453 NLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
           + ++ E G    +   + +V++  + G L  A+ +   +  + D   W +++
Sbjct: 513 NMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALL 564


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 188/530 (35%), Positives = 290/530 (54%), Gaps = 21/530 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F ++      +W+++I AFA++    +AI +Y+ M +  + RP+ +TF   L 
Sbjct: 272 LDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGV-RPNYYTFASVLL 330

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  V  L   + +H  ++ +GY+  +V  T L+  Y + G ++ ARS+FD +  RD   
Sbjct: 331 ACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGL 390

Query: 158 WNSIISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           W  +I  Y++       L+LY  M+    V        C++S+CA +GA       H   
Sbjct: 391 WTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDI 450

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
              G +    +  +LV+MY++ GNL+SA  VF +M  RD L+W ++I GY  HG    A+
Sbjct: 451 EADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLAL 510

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             +K+M + G  P  +TF+ +L  CSH GL E+G + F  + S Y + P I HY C++DL
Sbjct: 511 GLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDL 570

Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
             RAG+L  A E+IN + P +P  V W +LLG+ +IH++V+    A   + +L+      
Sbjct: 571 LSRAGRLSDAEELIN-AMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPAS 629

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           YVLL+ ++A T +  G+A  R  + + G+K   G SWIE+ +Q+H+F V D SHP    I
Sbjct: 630 YVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEI 689

Query: 455 YRKLEEIMHRAKFIGYTKD-ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           + +L+ +  + K  GY  + E ++   G   ++ L +    HSEKLAIAFGL  T  GT+
Sbjct: 690 FAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLR---LHSEKLAIAFGLIATAPGTT 746

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LRI   LR            S    R++IVRD  R+H FRDG CSCGDYW
Sbjct: 747 LRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 174/332 (52%), Gaps = 10/332 (3%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S++ A++ F+ I      +W S++ A+AQ+     A+  Y  M +    +P+   +T  L
Sbjct: 73  SVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMDL----QPNPVVYTTVL 128

Query: 97  KACERVKALNKCQELHGFVIRS-GYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-ERD 154
            AC  ++AL + + +H  +  + G +  V++  +L+  YA  G +E A+ +F+ M   R 
Sbjct: 129 GACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRS 188

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           + SWN++I+ Y Q+    EA++LYE M   DV     T   +LS+C+++G L+ G  +H 
Sbjct: 189 VSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHA 245

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
           +    G    + + NAL+ MYA+C  LD A  +F R+ +RDV+SW++MI  +      DE
Sbjct: 246 LISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDE 305

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           AI F+ +M + G  P+  TF  +L  C+  G +  G    H  +     K  + +   LV
Sbjct: 306 AIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAG-RAVHDQILGNGYKITLVNGTALV 364

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           DLY   G L++A  + +     D  LW  L+G
Sbjct: 365 DLYTSYGSLDEARSLFDQIENRDEGLWTVLIG 396



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 178/371 (47%), Gaps = 8/371 (2%)

Query: 37  SLSYAQLLFNQIQNPQT-QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           SL  A+ LF ++   ++  +WN++I A+AQS    +AI  Y  M +     P   TFT  
Sbjct: 172 SLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDV----EPSVRTFTSV 227

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L AC  +  L++ +++H  +   G E  + +   L+  YA    ++ A  +F  +P RD+
Sbjct: 228 LSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDV 287

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW+++I+ + +     EA++ Y +M+ E V  + +T   +L +CA VG L  G  +H  
Sbjct: 288 VSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQ 347

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
               G+  ++  G ALVD+Y   G+LD A  +F ++  RD   W  +I GY   G     
Sbjct: 348 ILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGV 407

Query: 276 ISFFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           +  +++M      P + I +  ++  C+  G   +  +  H  +    +         LV
Sbjct: 408 LELYREMKNTTKVPATKIIYSCVISACASLGAFADARQA-HSDIEADGMISDFVLATSLV 466

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           ++Y R G LE A +V +  S  D + W TL+     H    +  + +   ++LE A   +
Sbjct: 467 NMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLA-LGLYKEMELEGAEPSE 525

Query: 395 YVLLATIYACT 405
              +  +YAC+
Sbjct: 526 LTFMVVLYACS 536



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 156/334 (46%), Gaps = 21/334 (6%)

Query: 104 ALNKCQELHGFVIRSGYERC-------VVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           AL +CQ+L    +R  ++R        V +   ++R Y   G + +AR  FD +  ++  
Sbjct: 33  ALRQCQDLES--VRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDY 90

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH-RI 215
           SW S+++ Y Q   +  AL LY+RM   D+  +      +L +CA + AL  G  +H RI
Sbjct: 91  SWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHSRI 147

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDE 274
           +   G    V + N+L+ MYAKCG+L+ A  +F RM  +R V SWN+MI  Y   G  +E
Sbjct: 148 SGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEE 207

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           AI  ++ M      P   TF  +L  CS+ GL+++G +  H ++S    +  +     L+
Sbjct: 208 AIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRK-IHALISSRGTELDLSLQNALL 263

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
            +Y R   L+ A ++       D V W  ++ +     ++    I   + +QLE      
Sbjct: 264 TMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFA-ETDLFDEAIEFYSKMQLEGVRPNY 322

Query: 395 YVLLATIYACTK--DEEGVARTRKLIKSNGIKTT 426
           Y   + + AC    D          I  NG K T
Sbjct: 323 YTFASVLLACASVGDLRAGRAVHDQILGNGYKIT 356



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 123/269 (45%), Gaps = 16/269 (5%)

Query: 16  RQAHEIHGEWLLNSYAISVSS------------SLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           R    +H + L N Y I++ +            SL  A+ LF+QI+N     W  LI  +
Sbjct: 339 RAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGY 398

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           ++       +  Y  M   +        ++  + AC  + A    ++ H  +   G    
Sbjct: 399 SKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISD 458

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
            V++T+L+  Y+  G +E+AR VFD M  RD ++W ++I+ Y +   H  AL LY+ M  
Sbjct: 459 FVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMEL 518

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMG--IFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           E       T + +L +C+H G    G  +F+  I  +     ++   + ++D+ ++ G L
Sbjct: 519 EGAEPSELTFMVVLYACSHAGLQEQGKQLFIS-IQSDYAMHPNIAHYSCIIDLLSRAGRL 577

Query: 242 DSAFCVFSRMR-KRDVLSWNSMIVGYGVH 269
             A  + + M  + + ++W+S++    +H
Sbjct: 578 SDAEELINAMPVEPNDVTWSSLLGASRIH 606


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 189/526 (35%), Positives = 292/526 (55%), Gaps = 15/526 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A+ LF+++ +    +WN++I  +      ++A+  +  M     S  + FT +  L 
Sbjct: 145 IEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALA 204

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A   + +L + +E+HG++IRSG E   VV T L+  Y   G +  AR +FD M ++D+VS
Sbjct: 205 AAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVS 264

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++I    +     E   L+  +    V  + +T   +L++CA + A  MG  +H    
Sbjct: 265 WTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMT 324

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            +G+    +  +ALV +Y+KCGN ++A  VF++M + D++SW S+IVGY  +G+ D A+ 
Sbjct: 325 RVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQ 384

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
           FF+ +L +G  PD ITF+G+L  C+H GLV+ G+EYFH +  ++ L     HY C++DL 
Sbjct: 385 FFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLL 444

Query: 338 GRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            R+G+ ++A  +I N     D  LW +LLG C+IH N+E+ E A K L +LE  +   Y+
Sbjct: 445 ARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYI 504

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
            L+ IYA         + R  + + GI   PG SWIEI  QVH F+V D SHP    I+ 
Sbjct: 505 TLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHE 564

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            L E+  + K  GY  D + V       E+  E++  YHSEKLA+AFG+ +T  GT +++
Sbjct: 565 YLGELSKKMKEEGYVADTNFVL--HDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKV 622

Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
            KNLR            S    R +IVRD  R+H F DG CSC DY
Sbjct: 623 FKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 151/342 (44%), Gaps = 38/342 (11%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           +  +I  F Q     +A+ Y     +  + +P    ++  + AC R + L   + +H   
Sbjct: 35  FEEIIELFCQQNRLKEAVDY-----LHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHT 89

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS--------------- 160
             S +   +V+S  L+  YA  G +  A+ +FD +P++DL SWN+               
Sbjct: 90  KASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQAR 149

Query: 161 ----------------IISCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHV 203
                           +IS Y    +++EAL L+  M+  E    + FTL   L++ A +
Sbjct: 150 KLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAI 209

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
            +L  G  +H      G      V  AL+D+Y KCG+L+ A  +F +M  +D++SW +MI
Sbjct: 210 SSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMI 269

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
                 GR  E  S F+ ++ +G  P+  TF G+L  C+     + G E  H  ++R   
Sbjct: 270 HRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKE-VHGYMTRVGY 328

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            P       LV +Y + G  E A  V N     D V W +L+
Sbjct: 329 DPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLI 370



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 39/208 (18%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           L+++C     L +G  +H       F+  + + N L+ MYAKCG+L  A  +F  + ++D
Sbjct: 69  LIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKD 128

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           + SWN+MI GY   GR ++A   F +M     H D+ ++  ++ G   QG   E ++ F 
Sbjct: 129 LCSWNTMISGYANVGRIEQARKLFDEMP----HRDNFSWNAVISGYVSQGWYMEALDLFR 184

Query: 316 MM-------------------------------VSRYNLKPGIKH----YGCLVDLYGRA 340
           MM                               +  Y ++ G++     +  L+DLYG+ 
Sbjct: 185 MMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKC 244

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSC 368
           G L +A  + +  +  D V W T++  C
Sbjct: 245 GSLNEARGIFDQMADKDIVSWTTMIHRC 272


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 189/529 (35%), Positives = 290/529 (54%), Gaps = 24/529 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  LF+++       W +++ A A +    +    +   +      P+ +TF+  L 
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLG 190

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC     L     LH   ++ G +  V V ++L+  Y   G ++  R VFD M  RDLV 
Sbjct: 191 ACGTPGVL---AALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVV 247

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNSII+ + Q+   + A++L+ RM+      +  TL  +L +C  +  L  G  +H  A 
Sbjct: 248 WNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVH--AH 305

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            + +   + + NAL+DMY KCG+L+ A  +F RM +RDV+SW++MI G   +G+  EA+ 
Sbjct: 306 VLKYERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALR 365

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F  M   G  P+ IT +G+L  CSH GLVE+G  YF  M   + ++P  +H+ C+VDL 
Sbjct: 366 VFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLL 425

Query: 338 GRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAGKL++A+E I + +   D V+WRTLLG+C++H++  +   A + +++LE    G  V
Sbjct: 426 GRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARV 485

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+  YA  +      ++ K ++  G+K  PG SWIE+   VH F+  D SHP +D I +
Sbjct: 486 LLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQ 545

Query: 457 KLEEIMHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           +L  ++ R   +GY      V   ++    ED L+    YHSEK+AIAFG      G  +
Sbjct: 546 ELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLK----YHSEKMAIAFGTMHAVGGKPI 601

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI+KNLR            S +  R +I+RD VR+HHF+DG CSCGDYW
Sbjct: 602 RIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 170/352 (48%), Gaps = 21/352 (5%)

Query: 86  RPDTFTFTFTLKACER------VKALNKCQELHGFV--IRSGYERCVVVSTNLMRGYAAN 137
           R D  + T  +K C R       + +++  E HG +     G    + VS +L+  YA  
Sbjct: 69  RADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKF 128

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL-EALKLYERMRFEDVGLDGFTLVCL 196
           G+++ A  +FD MPER++V+W ++++    A     EAL+    M  + V  + +T   +
Sbjct: 129 GLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSV 188

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           L +C   G L     LH    ++G    V+V ++L+D Y K G+LD    VF  M  RD+
Sbjct: 189 LGACGTPGVLAA---LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDL 245

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           + WNS+I G+   G G  AI  F +M  AGF  +  T   +L  C+   ++E G +  H 
Sbjct: 246 VVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQ-VHA 304

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEI 376
            V +Y     +  +  L+D+Y + G LE A  + +     D + W T++    + +N + 
Sbjct: 305 HVLKYERD--LILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISG--LAQNGKS 360

Query: 377 GE-IAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGIK 424
            E + + +L++ E  +     ++  ++AC+     E+G    R + K  GI+
Sbjct: 361 AEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQ 412


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 177/463 (38%), Positives = 268/463 (57%), Gaps = 17/463 (3%)

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
           +AL+   E+    I+  +   V +    +  YA  G++++A  VF+ +P +D++SWN++I
Sbjct: 199 QALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLI 258

Query: 163 SCYTQASFHLEALKLYERMR-FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           + Y Q     EA+++Y+ M   +++  +  T V +L + AHVGAL  G+ +H    +   
Sbjct: 259 TGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNL 318

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
              V+V   L+D+Y KCG L  A  +F ++ +   ++WN++I  +G+HG  ++ +  F +
Sbjct: 319 HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGE 378

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           ML  G  PD +TF+ LL  CSH G VEEG   F +M   Y +KP +KHYGC+VDL GRAG
Sbjct: 379 MLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAG 437

Query: 342 KLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
            LE A + I +     D  +W  LLG+C+IH N+E+G+ A   L ++++ + G YVLL+ 
Sbjct: 438 YLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSN 497

Query: 401 IYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE 460
           IYA     EGV + R L +  G+K TPGWS IE+  +V  F   ++SHP    IY +L  
Sbjct: 498 IYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRV 557

Query: 461 IMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
           +  + K +GY  D S V       ED  E     HSE+LAIAFG+ +TP  + +RI KNL
Sbjct: 558 LTAKMKSLGYIPDYSFVL--QDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNL 615

Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R            S    R+++VRD  R+HHF+DG+CSCGDYW
Sbjct: 616 RVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 196/411 (47%), Gaps = 55/411 (13%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA     SLS  +  F+QI      AWNS+I A+  +    +AI  +  +L+ S  
Sbjct: 57  LVNLYANLGDVSLS--RCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEI 114

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           RPD +TF   LKAC     L   +++H +  + G++  V V+ +L+  Y+  G    ARS
Sbjct: 115 RPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARS 171

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD+MP RD+ SWN++IS   Q     +AL + + MR E +                   
Sbjct: 172 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI------------------- 212

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
                       +M FV  V +    VDMYAK G LDSA  VF  +  +DV+SWN++I G
Sbjct: 213 ------------KMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITG 260

Query: 266 YGVHGRGDEAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           Y  +G   EAI  +K M       P+  T++ +L   +H G +++G++  H  V + NL 
Sbjct: 261 YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMK-IHGRVIKTNLH 319

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE-----IGEI 379
             +    CL+D+YG+ G+L  A+ +         V W  ++    IH + E      GE+
Sbjct: 320 LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEM 379

Query: 380 AMKNLVQLEAASAGDYVLLATIY-ACTKD---EEGVARTRKLIKSNGIKTT 426
                  L+     D+V   ++  AC+     EEG    R L++  GIK +
Sbjct: 380 -------LDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFR-LMQEYGIKPS 422



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 1/234 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F  I      +WN+LI  +AQ+    +AI  Y  M       P+  T+   L 
Sbjct: 236 LDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 295

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A   V AL +  ++HG VI++     V V+T L+  Y   G +  A S+F  +P+   V+
Sbjct: 296 AYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT 355

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN+IISC+       + LKL+  M  E V  D  T V LLS+C+H G +  G +  R+  
Sbjct: 356 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ 415

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHG 270
           E G   S+     +VD+  + G L+ A+     M  + D   W +++    +HG
Sbjct: 416 EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHG 469



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 5/131 (3%)

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           LH +    G V+S+++   LV++YA  G++  + C F ++ ++DV +WNSMI  Y  +G 
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97

Query: 272 GDEAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
             EAI  F Q+L+     PD  TF  +L  C   G + +G +  H    +   +  +   
Sbjct: 98  FHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRK-IHCWAFKLGFQWNVFVA 153

Query: 331 GCLVDLYGRAG 341
             L+ +Y R G
Sbjct: 154 ASLIHMYSRFG 164


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 177/510 (34%), Positives = 296/510 (58%), Gaps = 16/510 (3%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           ++NS++ A  +S    +A+     M+   ++  D  T+   +  C +++ L     +H  
Sbjct: 188 SYNSVLNALVESGRGEEAVEVLRRMVDECVAW-DHVTYVGVMGLCAQIRDLQLGLRVHAR 246

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           ++R G      V + L+  Y   G +  AR+VFD +  R++V W ++++ Y Q  +  E+
Sbjct: 247 LLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEES 306

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L L+  M  E    + +T   LL++CA + AL  G  LH    ++GF   V V NAL++M
Sbjct: 307 LNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINM 366

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           Y+K G++DS++ VF+ M  RD+++WN+MI GY  HG G +A+  F+ M+ A   P+ +TF
Sbjct: 367 YSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTF 426

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           +G+L   SH GLV+EG  Y + ++  + ++PG++HY C+V L  RAG L++A   + T+ 
Sbjct: 427 IGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQ 486

Query: 355 PS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
              D V WRTLL +C +HRN ++G    ++++Q++    G Y LL+ +YA  +  +GV  
Sbjct: 487 VKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVT 546

Query: 414 TRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD 473
            RKL++   IK  PG SW++I N +H F+ +  +HP++  IY+K+++++   K +GY  +
Sbjct: 547 IRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVPN 606

Query: 474 ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------ 521
             + +V     ++  E   +YHSEKLA+A+GL   P    +RI+KNLR            
Sbjct: 607 --IASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIRIIKNLRMCDDCHTAVKLI 664

Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           S   +R +IVRD  R+HHFRDG C+C D+W
Sbjct: 665 SKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 174/368 (47%), Gaps = 7/368 (1%)

Query: 2   GLKKHARYVGLNK-ARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           G   HA+++  N+ +  +H  H   L++ Y       L  A+ LF+ +      +WN L+
Sbjct: 31  GKAMHAQFLIRNQTSNHSHISHLNSLVHLYV--KCGQLGLARNLFDAMPLRNVVSWNVLM 88

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             +    + L+ +  + +M+    + P+ + FT  L AC     + +  + HG + + G 
Sbjct: 89  AGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGL 148

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPER---DLVSWNSIISCYTQASFHLEALKL 177
                V + L+  Y+    +E A  V D +P     D+ S+NS+++   ++    EA+++
Sbjct: 149 VCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEV 208

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
             RM  E V  D  T V ++  CA +  L +G+ +H      G +   +VG+ L+DMY K
Sbjct: 209 LRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGK 268

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
           CG + +A  VF  ++ R+V+ W +++  Y  +G  +E+++ F  M   G  P+  TF  L
Sbjct: 269 CGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVL 328

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           L  C+    +  G +  H  V +   K  +     L+++Y ++G ++ +  V       D
Sbjct: 329 LNACAGIAALRHG-DLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRD 387

Query: 358 PVLWRTLL 365
            + W  ++
Sbjct: 388 IITWNAMI 395


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 193/525 (36%), Positives = 290/525 (55%), Gaps = 18/525 (3%)

Query: 42  QLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101
            LL      P +  ++SL R  A    P+ AI +Y  +L A+L    +FTFT   KAC  
Sbjct: 59  HLLATSHPAPDSFLFSSLTRTAAHHGLPVAAIAFYRGLLSAALPF-SSFTFTAVAKACAD 117

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161
           + AL     +H   I  G+     V T L+  Y+  G +  AR +FD + +R +V+WN++
Sbjct: 118 LSALRTGAAIHAHSILLGFGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAM 177

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           IS Y Q       + +Y+ M+      D  T V  LS+CA  GAL++G  + R       
Sbjct: 178 ISGYEQNGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDLGREVERRVVSERM 237

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
             SV++G+ALV+MYA+CG +D A   F  +++R+V++W SMI GYG+HG G EAI  F  
Sbjct: 238 DISVFLGSALVNMYARCGVVDKARRWFDALQERNVVTWTSMIAGYGMHGHGREAIKLFHL 297

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           M   G  P+ +TF+ +L  C+H GLV EG + F  M   Y L P ++HY  +VD++GRAG
Sbjct: 298 MRCEGPPPNHVTFVAVLSACAHAGLVMEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRAG 357

Query: 342 KLEKALEVINTSSPSD--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            L++A++ I+   P +  P +W  +LG+CK+H+N  +G    + L+ LE  +   +VLL+
Sbjct: 358 LLDEAMQFISDYMPGEPGPEVWTAVLGACKMHKNFNLGVEVAERLIALEPENPSYHVLLS 417

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            IYA +     V + R  +    +K   G+S IE+G   H F + +KSHP    IY  LE
Sbjct: 418 NIYALSGKMHHVEKVRNTMIKRRLKKQIGFSLIELGGTSHLFRMGEKSHPQTTEIYHYLE 477

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS-LRIVK 518
           E++HR    GY  +   V       E   E +  YHSEKLA+A+GL  +   T+ +R++K
Sbjct: 478 ELIHRITAAGYMPETESVLHELEEEE--REGALRYHSEKLAVAYGLMMSVGSTTPIRVIK 535

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           NLR            S   +R+++VRD+ R+HHF+DG CSC +YW
Sbjct: 536 NLRICGDCHLAIKFMSAVENREIVVRDKHRFHHFKDGKCSCLEYW 580



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           ++ H  ++ +G+ R + + T L     A G    A  +  + P  D   ++S+       
Sbjct: 24  KQAHARLVVTGHGRSLPLITKLATLAVAAGAAPYAHLLATSHPAPDSFLFSSLTRTAAHH 83

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
              + A+  Y  +    +    FT   +  +CA + AL  G  +H  +  +GF    +V 
Sbjct: 84  GLPVAAIAFYRGLLSAALPFSSFTFTAVAKACADLSALRTGAAIHAHSILLGFGSDRFVL 143

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
            ALV +Y+KCG L  A  +F  +R R V++WN+MI GY  +G  +  I  +K+M  A   
Sbjct: 144 TALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNGLAERGIGVYKEMQAAKAV 203

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           PDS+TF+  L  C+  G ++ G E    +VS   +   +     LV++Y R G ++KA  
Sbjct: 204 PDSMTFVATLSACAQAGALDLGREVERRVVSE-RMDISVFLGSALVNMYARCGVVDKARR 262

Query: 349 VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIYACT 405
             +     + V W +++    +H +   G  A+K  +L++ E         +A + AC 
Sbjct: 263 WFDALQERNVVTWTSMIAGYGMHGH---GREAIKLFHLMRCEGPPPNHVTFVAVLSACA 318



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 111/215 (51%), Gaps = 6/215 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF+ I++    AWN++I  + Q+    + I  Y  M  A+ + PD+ TF  TL 
Sbjct: 156 LGVARKLFDAIRDRSVVAWNAMISGYEQNGLAERGIGVYKEM-QAAKAVPDSMTFVATLS 214

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC +  AL+  +E+   V+    +  V + + L+  YA  GV++ AR  FD + ER++V+
Sbjct: 215 ACAQAGALDLGREVERRVVSERMDISVFLGSALVNMYARCGVVDKARRWFDALQERNVVT 274

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W S+I+ Y       EA+KL+  MR E    +  T V +LS+CAH G +  G      AC
Sbjct: 275 WTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNHVTFVAVLSACAHAGLVMEG--RDAFAC 332

Query: 218 EM---GFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
                G V  V    ++VDM+ + G LD A    S
Sbjct: 333 MKRVYGLVPRVEHYCSMVDMFGRAGLLDEAMQFIS 367


>gi|242055215|ref|XP_002456753.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
 gi|241928728|gb|EES01873.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
          Length = 521

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/442 (40%), Positives = 259/442 (58%), Gaps = 18/442 (4%)

Query: 126 VSTNLMRGYA---ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182
           V+  L+  YA     G    AR+VFD MP RD+V+W S+++   +A  H  A++ Y  M 
Sbjct: 82  VANALVDAYARLPCAGGAATARAVFDEMPRRDVVTWTSLLTGLARAGAHAAAVRAYHGMV 141

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
              V  D F +  +LSSCA   AL++G  +H  A  +G      VGN+LV MYAK G L 
Sbjct: 142 AAGVQTDEFAVAAVLSSCAGSTALDVGRSVHAAAVHLGLCPFRSVGNSLVSMYAKTGALH 201

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A  VF  M  R  ++W ++IVGY  +GRG  ++  +  M+ +G  PD +TF+GLL  CS
Sbjct: 202 DARAVFDAMPARCTITWTALIVGYAQNGRGRRSLEVYTDMVRSGCRPDYVTFIGLLFACS 261

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLW 361
           H GLV+ G ++F  M   Y + PG  HY C+VDL GRAG+L++A++++N SS   D  +W
Sbjct: 262 HAGLVDAGRDHFRSMAVDYGIAPGPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVW 321

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
           ++LLG+C++HRN E+ E A + + +L+   A  YV+L+ +Y+  +    VAR R L+K+ 
Sbjct: 322 KSLLGACRVHRNAELAERAAEMVWRLDPTDAVPYVMLSNLYSRARRWGDVARIRALMKAR 381

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
           GI   PG SW+ +    H F V+D+ HP A  IYRK+EE+  R +  GY  D    A+  
Sbjct: 382 GITKEPGCSWVGVNGVTHLFHVEDRGHPRAAEIYRKVEEMTERIRAEGYVPDTDW-ALQD 440

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
            + E   E+  AYHSE+LA+AFGL   P    +R+ KNLR            + AY R +
Sbjct: 441 EAPEG-RERGLAYHSERLAVAFGLLAVPAAAPIRVFKNLRVCGDCHTAIKMVAKAYGRVI 499

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           I+RD   +HH +DG CSCGDYW
Sbjct: 500 ILRDANCFHHMKDGECSCGDYW 521


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 193/539 (35%), Positives = 302/539 (56%), Gaps = 23/539 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ Y  S   +L+ A  +F ++ +    +W S+I A+ +      AI  ++ M    + 
Sbjct: 337 LLDMY--SKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGV- 393

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           RPD +T T  + AC    +L+K +++H +VI++G    + V+  L+  YA  G +E AR 
Sbjct: 394 RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARL 453

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF  +P +D+VSWN++I  Y+Q     EAL+L+  M+ +    D  T+ C+L +CA + A
Sbjct: 454 VFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAA 512

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L+ G  +H      G+   ++V  ALVDMYAKCG L  A  +F  + K+D++SW  MI G
Sbjct: 513 LDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAG 572

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           YG+HG G+EAIS F +M +AG  PD  +F  +L  CSH GL+ EG ++F+ M +   ++P
Sbjct: 573 YGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEP 632

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
            ++HY C+VDL  R G L KA + I +     D  +W  LL  C+IH +V++ E   +++
Sbjct: 633 KLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHI 692

Query: 385 VQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
            +LE  +   YV+LA +YA  +  E V + RK ++  G K  PG SWIE+G + + FV  
Sbjct: 693 FELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAG 752

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKS--SAYHSEKLAIA 502
           +  HP A  I   L ++  + +   Y+     V +    +ED +EK      HSEK A+A
Sbjct: 753 NSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLI----NEDDMEKEMIQCGHSEKSAMA 808

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           FG+   P G ++R+ KN R            S     ++++RD  R+HHF+DGLCSC D
Sbjct: 809 FGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 170/323 (52%), Gaps = 2/323 (0%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F++I N +   WN L+  +A+  +  +++  +  M    +   + +TFT  LK    + 
Sbjct: 151 IFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVV-GNCYTFTCVLKCFAALG 209

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            + +C+ +HG+V++ G+     V  +L+  Y   G +E+A ++FD + E D+VSWNS+I+
Sbjct: 210 KVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 269

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
                 F    L+++ +M    V +D  TLV +L +CA++G L++G  LH    +  F E
Sbjct: 270 GCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSE 329

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            V   N L+DMY+KCGNL+ A  VF +M    ++SW S+I  Y   G   +AI  F +M 
Sbjct: 330 EVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQ 389

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  PD  T   ++  C+    +++G +  H  V +  +   +     L+++Y + G +
Sbjct: 390 SKGVRPDIYTVTSIVHACACSSSLDKGRD-VHSYVIKNGMGSNLPVTNALINMYAKCGSV 448

Query: 344 EKALEVINTSSPSDPVLWRTLLG 366
           E+A  V +     D V W T++G
Sbjct: 449 EEARLVFSKIPVKDIVSWNTMIG 471



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 183/376 (48%), Gaps = 17/376 (4%)

Query: 9   YVGLNKARQAHEIHGEWLLNSYA--ISVSSSL----------SYAQLLFNQIQNPQTQAW 56
           +  L K ++   +HG  L   +    +V +SL            A  LF+++  P   +W
Sbjct: 205 FAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSW 264

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
           NS+I     +      +  +  ML+  +   D  T    L AC  +  L+  + LHGF +
Sbjct: 265 NSMINGCVVNGFSGNGLEIFIQMLILGV-EVDLTTLVSVLVACANIGNLSLGRALHGFGV 323

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
           ++ +   VV S  L+  Y+  G +  A  VF  M +  +VSW SII+ Y +   + +A+ 
Sbjct: 324 KACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIG 383

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           L++ M+ + V  D +T+  ++ +CA   +L+ G  +H    + G   ++ V NAL++MYA
Sbjct: 384 LFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYA 443

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           KCG+++ A  VFS++  +D++SWN+MI GY  +   +EA+  F  M    F PD IT   
Sbjct: 444 KCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMAC 502

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-LVDLYGRAGKLEKALEVINTSSP 355
           +L  C+    +++G E    ++ R        H  C LVD+Y + G L  A  + +    
Sbjct: 503 VLPACAGLAALDKGREIHGHILRRGYFSD--LHVACALVDMYAKCGLLVLAQLLFDMIPK 560

Query: 356 SDPVLWRTLLGSCKIH 371
            D + W  ++    +H
Sbjct: 561 KDLISWTVMIAGYGMH 576



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 173/402 (43%), Gaps = 21/402 (5%)

Query: 4   KKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           K H R++   + R+   +H         + VS S       F    +  TQ  N+ I  F
Sbjct: 26  KSHNRFIFFKQPRRTCLLHS-------TVCVSPS-------FTNTTHSVTQNQNAKINKF 71

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTF-TFTFTLKACERVKALNKCQELHGFVIRSGYER 122
            +      AI     +L  S S      ++   L+ C   K+L   + +H  +I +G   
Sbjct: 72  CEMGDLRNAI----ELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISV 127

Query: 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182
              +   L+  Y   G +   R +FD +    +  WN ++S Y +     E++ L+++M+
Sbjct: 128 DEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQ 187

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
              V  + +T  C+L   A +G +     +H    ++GF  +  V N+L+  Y K G ++
Sbjct: 188 KLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVE 247

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
           SA  +F  + + DV+SWNSMI G  V+G     +  F QML+ G   D  T + +L  C+
Sbjct: 248 SAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACA 307

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           + G +  G    H    +      +     L+D+Y + G L  A EV      +  V W 
Sbjct: 308 NIGNLSLG-RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWT 366

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
           +++ +  +   +    I + + +Q +      Y + + ++AC
Sbjct: 367 SIIAA-YVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHAC 407


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/521 (33%), Positives = 290/521 (55%), Gaps = 19/521 (3%)

Query: 44   LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
            +F  +      +W ++I ++ ++    +       M++  + RPD F  T  L A    +
Sbjct: 575  IFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGI-RPDVFAVTSALHAFAGDE 633

Query: 104  ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            +L + + +HG+ IR+G E+ + V+  LM  Y     +E AR +FD +  +D++SWN++I 
Sbjct: 634  SLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIG 693

Query: 164  CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
             Y++ +F  E+  L+  M  +    +  T+ C+L + A + +L  G  +H  A   GF+E
Sbjct: 694  GYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLE 752

Query: 224  SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
              Y  NALVDMY KCG L  A  +F R+ K++++SW  MI GYG+HG G  AI+ F+QM 
Sbjct: 753  DSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMR 812

Query: 284  MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             +G  PD+ +F  +L  C H GL  EG  +F  M   Y ++P +KHY C+VDL  R G L
Sbjct: 813  GSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDL 872

Query: 344  EKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
            ++ALE I  S P +P   +W +LL  C+IH+NV++ E     + +LE  + G YVLLA I
Sbjct: 873  KEALEFIE-SMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANI 931

Query: 402  YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
            YA  +  E V + +  I   G++   G+SWIE+ ++VH F+ D+++HPD + I   L+++
Sbjct: 932  YAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDV 991

Query: 462  MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
              R +  G+   +    +   + +   +++   HS KLA+AFG+   P+G  +R+ KN +
Sbjct: 992  ARRMRQEGHDPKKKYALM--GADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKNSK 1049

Query: 522  SIAY------------SRDLIVRDRVRYHHFRDGLCSCGDY 550
              ++            +R++I+RD  R+H F  G CSC  Y
Sbjct: 1050 VCSHCHEAAKFISKMCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 177/388 (45%), Gaps = 28/388 (7%)

Query: 38  LSYAQLLFNQI--QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           L  A+ +F+ +  Q    + W SL+ A+A++    +A+  +  M    +S PD    +  
Sbjct: 152 LGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS-PDAHAVSCV 210

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           LK    + +L + + +HG + + G  +   V+  L+  Y+  G +E A  VFD+M  RD 
Sbjct: 211 LKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDA 270

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           +SWNS+I       +H  A+ L+ +M  +   +   T++ +L +CA +G   +G  +H  
Sbjct: 271 ISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGY 330

Query: 216 ACEMGF----------VESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIV 264
           + + G           ++   +G+ LV MY KCG++ SA  VF  M  K +V  WN ++ 
Sbjct: 331 SVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMG 390

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL-----CGCSHQGLVEEGVEYFHMMVS 319
           GY   G  +E++S F QM   G  PD      LL       C+  GLV  G       + 
Sbjct: 391 GYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHG------YIV 444

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR-NVEIGE 378
           +            L+  Y ++  +  A+ V N     D + W +++  C  +  N E  E
Sbjct: 445 KLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIE 504

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTK 406
           + ++   Q +   +    LL+ + AC +
Sbjct: 505 LFIRMWTQGQELDS--VTLLSVLPACAQ 530



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 158/330 (47%), Gaps = 3/330 (0%)

Query: 38  LSYAQLLFNQIQNP-QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++ A+ +F+ + +      WN ++  +A+     +++  +  M    ++ PD    +  L
Sbjct: 366 MASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIA-PDEHAISCLL 424

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           K    +         HG++++ G+     V   L+  YA + +I  A  VF+ MP +D +
Sbjct: 425 KCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTI 484

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWNS+IS  +    + EA++L+ RM  +   LD  TL+ +L +CA       G  +H  +
Sbjct: 485 SWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYS 544

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + G +    + NAL+DMY+ C +  S   +F  M +++V+SW +MI  Y   G  D+  
Sbjct: 545 VKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVA 604

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
              ++M++ G  PD       L   +    +++G +  H    R  ++  +     L+++
Sbjct: 605 GLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQG-KSVHGYTIRNGMEKLLPVANALMEM 663

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           Y +   +E+A  + +  +  D + W TL+G
Sbjct: 664 YVKCRNVEEARLIFDRVTNKDVISWNTLIG 693



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 175/374 (46%), Gaps = 12/374 (3%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S+ +  A L+FN++    T +WNS+I   + +    +AI  +  M        D+ T   
Sbjct: 465 SNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQG-QELDSVTLLS 523

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L AC + +     + +HG+ +++G      ++  L+  Y+     ++   +F +M +++
Sbjct: 524 VLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKN 583

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +VSW ++I+ Y +A    +   L + M  + +  D F +   L + A   +L  G  +H 
Sbjct: 584 VVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHG 643

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                G  + + V NAL++MY KC N++ A  +F R+  +DV+SWN++I GY  +   +E
Sbjct: 644 YTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNE 703

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           + S F  ML+  F P+++T   +L   +    +E G E  H    R            LV
Sbjct: 704 SFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGRE-IHAYALRRGFLEDSYASNALV 761

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH----RNVEIGEIAMKNLVQLEAA 390
           D+Y + G L  A  + +  +  + + W  ++    +H      + + E    + ++ +AA
Sbjct: 762 DMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAA 821

Query: 391 SAGDYVLLATIYAC 404
           S       A +YAC
Sbjct: 822 S-----FSAILYAC 830



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 159/335 (47%), Gaps = 19/335 (5%)

Query: 49  QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM-LMASLSRPDTFTFTFTLKACERVKALNK 107
           +NP ++A +S +    Q L   QA      + L+ S    D  ++   ++ C   ++L  
Sbjct: 58  KNPPSRALSSDVNLRIQRLC--QAGDLAGALRLLGSDGGVDVRSYCMVVQLCGEERSLEA 115

Query: 108 CQELHGFVIRSGYE----RCVVVSTNLMRGYAANGVIEAARSVFDNMPER--DLVSWNSI 161
            +  H  +  S       +  V+   L+  Y   G +  AR+VFD MP +  D+  W S+
Sbjct: 116 AKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSL 175

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           +S Y +A    EA+ L+ +M+   V  D   + C+L   + +G+L  G  +H +  ++G 
Sbjct: 176 MSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGL 235

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
            ++  V NAL+ +Y++CG ++ A  VF  M  RD +SWNSMI G   +G    A+  F +
Sbjct: 236 GQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSK 295

Query: 282 MLMAGFHPDSITFLGLLCGCS--HQGLVEEGVEYFH----MMVSRYNLKPGIKHYGC--- 332
           M   G    S+T L +L  C+    GL+ + V  +     ++    +++ GI        
Sbjct: 296 MWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSK 355

Query: 333 LVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLG 366
           LV +Y + G +  A  V +  SS  +  +W  ++G
Sbjct: 356 LVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMG 390



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 109/255 (42%), Gaps = 15/255 (5%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS-WNSIISCYTQASFHLEALKLYER 180
           RC V++    R   A     ++ S   N P R L S  N  I    QA     AL+L   
Sbjct: 33  RCSVLAAPAGRVLEAPTAAPSSWST-KNPPSRALSSDVNLRIQRLCQAGDLAGALRLLG- 90

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI-----ACEMGFVESVYVGNALVDMY 235
               D G+D  +   ++  C    +L      H +     A   G   SV +G  LV  Y
Sbjct: 91  ---SDGGVDVRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSV-LGKRLVLAY 146

Query: 236 AKCGNLDSAFCVFSRMRKR--DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
            KCG+L  A  VF  M  +  DV  W S++  Y   G   EA+S F+QM   G  PD+  
Sbjct: 147 LKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHA 206

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
              +L   S  G + EG E  H ++ +  L         L+ +Y R G++E A  V ++ 
Sbjct: 207 VSCVLKCVSSLGSLTEG-EVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSM 265

Query: 354 SPSDPVLWRTLLGSC 368
            P D + W +++G C
Sbjct: 266 HPRDAISWNSMIGGC 280


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 203/558 (36%), Positives = 301/558 (53%), Gaps = 34/558 (6%)

Query: 18  AHEIHGEWLLNSYAISVSSSLSYAQL------------LFNQIQNPQTQAWNSLIRAFAQ 65
           A EIH   +   +A  V+   S  Q+            +F++++     +W ++I  + +
Sbjct: 315 AKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEK 374

Query: 66  SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV 125
           +  P +A+  Y  M + ++S PD  T    L AC  +  L+   +LH      G+ R +V
Sbjct: 375 NGFPDKALEVYALMEVNNVS-PDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIV 433

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS--CYTQASFHLEALKLYERMRF 183
           V+  L+  YA + +IE A  VF  MP++D++SW+S+I+  C+   +F  EAL  +  M  
Sbjct: 434 VANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNF--EALYYFRHM-L 490

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
            DV  +  T +  L++CA  G+L  G  +H      G     YV NAL+D+Y KCG    
Sbjct: 491 ADVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGY 550

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A+  F     +DV+SWN M+ G+  HG GD A+SFF +ML  G HPD +TF+ LLCGCS 
Sbjct: 551 AWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSR 610

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWR 362
            G+V +G E FH M  +Y++ P +KHY C+VDL  R G+L +    IN      D  +W 
Sbjct: 611 AGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWG 670

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
            LL  C+IHRN+E+GE+A K +++LE   AG +VLL+ +YA       V++ RK ++  G
Sbjct: 671 ALLNGCRIHRNIELGELAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKG 730

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           ++   G SW+E+   +H F+ DD+SHP    I   L+ I  R K  G+   ES       
Sbjct: 731 LEHDYGCSWVEVKGAIHAFLTDDESHPQIKEINDVLDGIYERMKASGFAPVESYSLEDKE 790

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN----------LRSIA--YSRDLI 530
            S+D        HSE+LA+AFGL  T  GTS+ + KN          LR I+    R++ 
Sbjct: 791 VSKD---DVLCGHSERLAVAFGLINTTPGTSICVTKNQYTCESCHGILRMISKIVRREIT 847

Query: 531 VRDRVRYHHFRDGLCSCG 548
           VRD   +HHFRDG CSCG
Sbjct: 848 VRDTKEFHHFRDGSCSCG 865



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 173/337 (51%), Gaps = 3/337 (0%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           +A  +F ++      +WN ++  + ++    +A+  Y+ ML A  +RPD +TF   L++C
Sbjct: 147 HAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAG-ARPDVYTFPCVLRSC 205

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
             V  L   +E+H  V+R G    V V   L+  YA  G +EAAR VFD M   D +SWN
Sbjct: 206 GGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWN 265

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++I+ + +       L+L+  M  ++V  +  T+  +  +   +  L+    +H +A + 
Sbjct: 266 AMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKR 325

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           GF   V   N+L+ MY+  G +  A  VFSRM  RD +SW +MI GY  +G  D+A+  +
Sbjct: 326 GFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVY 385

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
             M +    PD +T    L  C+  G ++ G++   +  S+  ++  I     LV++Y +
Sbjct: 386 ALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIR-YIVVANALVEMYAK 444

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVE 375
           +  +EKA+EV       D + W +++ G C  H+N E
Sbjct: 445 SKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFE 481



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 187/372 (50%), Gaps = 16/372 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +      +WN++I    ++      +  + HML   +  P+  T T    A  
Sbjct: 249 ARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEV-EPNLMTITSVTVASG 307

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +  L+  +E+H   ++ G+   V    +L++ Y++ G +  A +VF  M  RD +SW +
Sbjct: 308 LLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTA 367

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y +  F  +AL++Y  M   +V  D  T+   L++CA +G L++GI LH +A   G
Sbjct: 368 MISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKG 427

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F+  + V NALV+MYAK   ++ A  VF  M  +DV+SW+SMI G+  + +  EA+ +F+
Sbjct: 428 FIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFR 487

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG----CLVDL 336
            ML A   P+S+TF+  L  C+  G +  G E     +  + L+ GI   G     L+DL
Sbjct: 488 HML-ADVKPNSVTFIAALAACAATGSLRCGKE-----IHAHVLRQGIASEGYVPNALLDL 541

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ-LEAASAGDY 395
           Y + G+   A          D V W  +L     H +   G+IA+    + LE     D 
Sbjct: 542 YVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGH---GDIALSFFNEMLETGEHPDE 598

Query: 396 V-LLATIYACTK 406
           V  +A +  C++
Sbjct: 599 VTFVALLCGCSR 610


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 194/551 (35%), Positives = 298/551 (54%), Gaps = 26/551 (4%)

Query: 20  EIHGEWLLNSYAISVSSSLSY---AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYY 76
           E  G+  +N+  I + SSL     A+ +F+++++    +W ++I +      P +A+  Y
Sbjct: 329 EFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETY 388

Query: 77  NHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136
             M +  +  PD  T    L AC  +  L+    LH   I++G    V+VS +L+  Y+ 
Sbjct: 389 KMMELEGI-LPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSK 447

Query: 137 NGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCL 196
              ++ A  VF N+  +++VSW S+I      +   EAL  + +M+ E +  +  TL+ +
Sbjct: 448 CKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISV 506

Query: 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           LS+CA +GAL  G  +H  A   G     ++ NA++DMY +CG    A   F+  +K+DV
Sbjct: 507 LSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDV 565

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
            +WN ++ GY   G+   A+  F +ML    HPD ITF+ LLC CS  G+V EG+EYF++
Sbjct: 566 TAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNI 625

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVE 375
           M ++YNL P +KHY C+VD+ GRAG+L+ A + I +     D  +W  LL +C+IHRNVE
Sbjct: 626 MKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVE 685

Query: 376 IGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIG 435
           +GEIA K + + +  S G Y+LL  +YA   + + V++ R L++  G+   PG SW+EI 
Sbjct: 686 LGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIK 745

Query: 436 NQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK-DESLVAVSGSSSEDFLEKSSAY 494
            +VH F+  D SH  +  I   L+    + K  G+     S  +   SS  D        
Sbjct: 746 GKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSRADIF----CG 801

Query: 495 HSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRD 542
           HSE+ AIAFGL  T  G  + + KNL             S    R++ VRD   YHHF+D
Sbjct: 802 HSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKD 861

Query: 543 GLCSCGD--YW 551
           G+CSCGD  YW
Sbjct: 862 GVCSCGDEGYW 872



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 199/373 (53%), Gaps = 13/373 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +S A++LF+++      +WN++I  + ++   L+ +  ++ M   S+  PD  T T    
Sbjct: 249 ISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVD-PDLITMTTVAS 307

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           ACE +      + +HG+V++S +   + ++ +L++ Y++ G +E A +VF  M  +D+VS
Sbjct: 308 ACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVS 367

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W ++I+         +A++ Y+ M  E +  D  TLV +LS+CA +G L++GI LH IA 
Sbjct: 368 WTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAI 427

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G V  V V N+L+DMY+KC  +D+A  VF  +  ++V+SW S+I+G  ++ R  EA+ 
Sbjct: 428 KTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALL 487

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL---- 333
           FF+QM      P+S+T + +L  C+  G +  G E     +  + L+ G+   G L    
Sbjct: 488 FFRQM-KESMKPNSVTLISVLSACARIGALMRGKE-----IHAHALRTGVGFDGFLPNAI 541

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           +D+Y R G+   AL   N S   D   W  LL         ++       +++LE     
Sbjct: 542 LDMYVRCGRKVPALNQFN-SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE-IHPD 599

Query: 394 DYVLLATIYACTK 406
           +   ++ + AC+K
Sbjct: 600 EITFISLLCACSK 612



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 198/391 (50%), Gaps = 10/391 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  +F ++      +WN L+  +A++    +A+  Y+ ML A + RP+ +TF   LK C 
Sbjct: 151 AWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEI-RPNVYTFPSVLKTCA 209

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            V  + + +E+H  VIR G+E  V V   L+  Y   G I  AR +FD MP+RD +SWN+
Sbjct: 210 GVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNA 269

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y +    LE L+L+  MR   V  D  T+  + S+C  +    +G  +H    +  
Sbjct: 270 MISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSE 329

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F   + + N+L+ MY+  G L+ A  VFSRM  +DV+SW +MI     H    +A+  +K
Sbjct: 330 FGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYK 389

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            M + G  PD IT + +L  C+  G ++ G+   H +  +  L   +     L+D+Y + 
Sbjct: 390 MMELEGILPDEITLVSVLSACACIGHLDLGIR-LHEIAIKTGLVSHVIVSNSLIDMYSKC 448

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKI-HRNVEIGEIAMKNLVQL-EAASAGDYVLL 398
             ++ ALEV    S  + V W +L+   +I +R+ E    A+    Q+ E+       L+
Sbjct: 449 KCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFE----ALLFFRQMKESMKPNSVTLI 504

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           + + AC +   G     K I ++ ++T  G+
Sbjct: 505 SVLSACARI--GALMRGKEIHAHALRTGVGF 533



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 147/312 (47%), Gaps = 6/312 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+ CE  +A ++   ++  V  S    CV +   L+  +   G +  A  VF  M ERD+
Sbjct: 104 LRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDV 163

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
            SWN ++  Y +A    EAL LY RM + ++  + +T   +L +CA V  +  G  +H  
Sbjct: 164 FSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAH 223

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
               GF   V VGNAL+ MY KCG++ +A  +F +M KRD +SWN+MI GY  +G G E 
Sbjct: 224 VIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEG 283

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCS--HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
           +  F  M      PD IT   +   C       +  GV   H  V +      I     L
Sbjct: 284 LELFSMMRELSVDPDLITMTTVASACELLDNERLGRGV---HGYVVKSEFGGDISMNNSL 340

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           + +Y   G+LE+A  V +     D V W  ++ S   H+ +    +    +++LE     
Sbjct: 341 IQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHK-LPFKAVETYKMMELEGILPD 399

Query: 394 DYVLLATIYACT 405
           +  L++ + AC 
Sbjct: 400 EITLVSVLSACA 411



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           +A+K  E M    + ++    + LL  C    A + G  ++ +         V +GNAL+
Sbjct: 80  QAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALL 139

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
            M+ + GNL  A+ VF +M +RDV SWN ++ GY   G  DEA++ + +ML A   P+  
Sbjct: 140 SMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVY 199

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
           TF  +L  C+    +  G E  H  V R+  +  +     L+ +Y + G +  A  + + 
Sbjct: 200 TFPSVLKTCAGVSDIARGKE-IHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDK 258

Query: 353 SSPSDPVLWRTLL 365
               D + W  ++
Sbjct: 259 MPKRDRISWNAMI 271


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 195/516 (37%), Positives = 290/516 (56%), Gaps = 22/516 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WN++I A  Q    L+A+  +  M+   L + D FT    L A   VK L    + HG 
Sbjct: 210 SWNAMIVACGQHREGLEAVELFREMVRRGL-KVDMFTMASVLTAFTCVKDLVGGMQFHGM 268

Query: 115 VIRSGYERCVVVSTNLMRGYA--ANGVIEAARSVFDNMPERDLVSWNSIISCYTQ-ASFH 171
           +I+SG+     V + L+  Y+  A G++E  R VF+ +   DLV WN++IS ++Q     
Sbjct: 269 MIKSGFHGNSHVGSGLIDLYSKCAGGMVEC-RKVFEEIAAPDLVLWNTMISGFSQYEDLS 327

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF-VESVYVGNA 230
            + +  +  M+      D  + VC+ S+C+++ + ++G  +H +A +       V V NA
Sbjct: 328 EDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNA 387

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           LV MY+KCGN+  A  VF  M + +++S NSMI GY  HG   E++  F+ ML     P+
Sbjct: 388 LVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPN 447

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
           +ITF+ +L  C H G VEEG +YF+MM  R+ ++P  +HY C++DL GRAGKL++A  +I
Sbjct: 448 TITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERII 507

Query: 351 NTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408
            T  P +P  + W TLLG+C+ H NVE+   A    +QLE  +A  YV+L+ +YA     
Sbjct: 508 ET-MPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARW 566

Query: 409 EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFI 468
           E  A  ++L++  G+K  PG SWIEI  +VH FV +D SHP    I+  + EI+ + K  
Sbjct: 567 EEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQA 626

Query: 469 GYTKDESLVAVSGSSSE-DFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------ 521
           GY  D     V     E D  E+   YHSEKLA+AFGL +T +   + +VKNLR      
Sbjct: 627 GYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCH 686

Query: 522 ------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                 S    R++ VRD  R+H F++G CSCGDYW
Sbjct: 687 NAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 189/426 (44%), Gaps = 43/426 (10%)

Query: 25  WLLNSYAI--SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ-----------SLSPLQ 71
           +L N + +  S   SL  AQ  F+  Q P   ++N+LI A+A+              P  
Sbjct: 45  YLSNHFTLLYSKCGSLHNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQP 104

Query: 72  AIFYYNHMLMASLSRP-------------------DTFTFTFTLKACERVKALNKCQELH 112
            I  YN ++ A   R                    D FT +  + AC     L   ++LH
Sbjct: 105 DIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGDDVGL--VRQLH 162

Query: 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQAS 169
            FV+  GY+    V+  ++  Y+  G +  AR VF  M E   RD VSWN++I    Q  
Sbjct: 163 CFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHR 222

Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
             LEA++L+  M    + +D FT+  +L++   V  L  G+  H +  + GF  + +VG+
Sbjct: 223 EGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGS 282

Query: 230 ALVDMYAKC-GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH-GRGDEAISFFKQMLMAGF 287
            L+D+Y+KC G +     VF  +   D++ WN+MI G+  +    ++ I  F++M   GF
Sbjct: 283 GLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGF 342

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
           HPD  +F+ +   CS+      G +   + +        +     LV +Y + G +  A 
Sbjct: 343 HPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDAR 402

Query: 348 EVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT-- 405
            V +T    + V   +++     H  VE+  + +  L+  +  +      +A + AC   
Sbjct: 403 RVFDTMPEHNMVSLNSMIAGYAQH-GVEVESLRLFELMLQKDIAPNTITFIAVLSACVHT 461

Query: 406 -KDEEG 410
            K EEG
Sbjct: 462 GKVEEG 467



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 99/254 (38%), Gaps = 46/254 (18%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC--------- 246
           LL +C     L  G  LH +  +     S Y+ N    +Y+KCG+L +A           
Sbjct: 15  LLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLTQYPN 74

Query: 247 ----------------------VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
                                 VF  + + D++S+N++I  Y   G    A+  F ++  
Sbjct: 75  VFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRE 134

Query: 285 AGFHPDSITFLGLLCGCSHQ-GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             F  D  T  G++  C    GLV +   +  ++V  Y+    + +   ++  Y R G L
Sbjct: 135 LRFGLDGFTLSGVIIACGDDVGLVRQ--LHCFVVVCGYDCYASVNN--AVLACYSRKGFL 190

Query: 344 EKALEV---INTSSPSDPVLWRTLLGSCKIHRN----VEIGEIAMKNLVQLEAASAGDYV 396
            +A  V   +      D V W  ++ +C  HR     VE+    ++  ++++  +    +
Sbjct: 191 NEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVL 250

Query: 397 LLATIYACTKDEEG 410
              T + C KD  G
Sbjct: 251 ---TAFTCVKDLVG 261


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/528 (34%), Positives = 291/528 (55%), Gaps = 17/528 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF+++    + +W +++  + +   P +A+  Y+ M     SRP+ FT +  + 
Sbjct: 167 LEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVA 226

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A   VK + + +E+HG ++R+G +   V+ ++LM  Y   G I+ AR++FD + E+D+VS
Sbjct: 227 AAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVS 286

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W S+I  Y ++S   E   L+  +       + +T   +L++CA +    +G  +H    
Sbjct: 287 WTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMT 346

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            +GF    +  ++LVDMY KCGN++SA  V     K D++SW S+I G   +G+ DEA+ 
Sbjct: 347 RVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALK 406

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
           +F  +L +G  PD +TF+ +L  C+H GLVE+G+E+F+ +  ++ L     HY CLVDL 
Sbjct: 407 YFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLL 466

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            R+G+ E+   VI +  P  P   LW ++LG C  + N+++ E A + L ++E  +   Y
Sbjct: 467 ARSGRFEQLKSVI-SEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTY 525

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V +A IYA     E   + RK ++  G+   PG SW EI  + H F+  D SHP  + I 
Sbjct: 526 VTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIV 585

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
             L E+  + K  GY    SLV       +   E++  YHSEKLA+AF + +T +GT+++
Sbjct: 586 EFLRELRKKMKEEGYVPATSLVLHDVEDEQK--EENLVYHSEKLAVAFAILSTEEGTAIK 643

Query: 516 IVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + KNLRS                R + VRD  R+H F +G CSCGDYW
Sbjct: 644 VFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 191/432 (44%), Gaps = 43/432 (9%)

Query: 13  NKARQAHEIHGEWLLNSYAISVSSSLSY--AQLLFNQIQNPQTQAWNSLIRA--FAQSLS 68
           + AR+   +HG ++L     S  +SL     +  FN            L RA  F +++ 
Sbjct: 4   SNARKLTTLHG-FILKRNLSSFHASLKRFSDKKFFNPNHEDGGVVVERLCRANRFGEAID 62

Query: 69  PL--QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV 126
            L  Q +      L+    +P   T+   ++ C + +AL + +++H  +  SG+   +V+
Sbjct: 63  VLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVI 122

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM----- 181
              L+R YA  G +  AR VFD MP RDL SWN +++ Y +     EA KL++ M     
Sbjct: 123 WNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDS 182

Query: 182 ---------------------------RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
                                      R  +   + FT+   +++ A V  +  G  +H 
Sbjct: 183 YSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHG 242

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                G      + ++L+DMY KCG +D A  +F ++ ++DV+SW SMI  Y    R  E
Sbjct: 243 HIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWRE 302

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
             S F +++ +   P+  TF G+L  C+     E G +  H  ++R    P       LV
Sbjct: 303 GFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQ-VHGYMTRVGFDPYSFASSSLV 361

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           D+Y + G +E A  V++     D V W +L+G C   +N +  E      + L++ +  D
Sbjct: 362 DMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCA--QNGQPDEALKYFDLLLKSGTKPD 419

Query: 395 YVLLATIY-ACT 405
           +V    +  ACT
Sbjct: 420 HVTFVNVLSACT 431


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 192/543 (35%), Positives = 292/543 (53%), Gaps = 25/543 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ Y  S    L  A+ +F ++ +    ++ S+I  +A+     +A+  +  M    +S
Sbjct: 186 LLDMY--SKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 243

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD +T T  L  C R + L++ + +H ++  +     + VS  LM  YA  G ++ A  
Sbjct: 244 -PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAEL 302

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLY----ERMRFEDVGLDGFTLVCLLSSCA 201
           VF  M  +D++SWN+II  Y++  +  EAL L+    E  RF     D  T+ C+L +CA
Sbjct: 303 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSP---DERTVACVLPACA 359

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
            + A + G  +H      G+    +V N+LVDMYAKCG L  A  +F  +  +D++SW  
Sbjct: 360 SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTV 419

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI GYG+HG G EAI+ F QM  AG   D I+F+ LL  CSH GLV+EG  +F++M    
Sbjct: 420 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 479

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIA 380
            ++P ++HY C+VD+  R G L KA   I N   P D  +W  LL  C+IH +V++ E  
Sbjct: 480 KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKV 539

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + + +LE  + G YVL+A IYA  +  E V R RK I   G++  PG SWIEI  +V+ 
Sbjct: 540 AEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNI 599

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           FV  D S+P+ + I   L ++  R    GY+       +     E   E++   HSEKLA
Sbjct: 600 FVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEK--EEALCGHSEKLA 657

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           +A G+ ++  G  +R+ KNLR            S    R++++RD  R+H F+DG CSC 
Sbjct: 658 MALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCR 717

Query: 549 DYW 551
            +W
Sbjct: 718 GFW 720



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 173/322 (53%), Gaps = 2/322 (0%)

Query: 45  FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
           F++++  +   WN L+   A+S     +I  +  M M+S    D++TF+   K+   +++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKM-MSSGVEMDSYTFSCVSKSFSSLRS 59

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           ++  ++LHGF+++SG+     V  +L+  Y  N  +++AR VFD M ERD++SWNSII+ 
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
           Y       + L ++ +M    + +D  T+V + + CA    +++G  +H I  +  F   
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 179

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
               N L+DMY+KCG+LDSA  VF  M  R V+S+ SMI GY   G   EA+  F++M  
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            G  PD  T   +L  C+   L++EG +  H  +   +L   I     L+D+Y + G ++
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEG-KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 298

Query: 345 KALEVINTSSPSDPVLWRTLLG 366
           +A  V +     D + W T++G
Sbjct: 299 EAELVFSEMRVKDIISWNTIIG 320



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 180/366 (49%), Gaps = 4/366 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+++      +WNS+I  +  +    + +  +  ML++ +   D  T       C 
Sbjct: 98  ARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGI-EIDLATIVSVFAGCA 156

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             + ++  + +H   +++ + R       L+  Y+  G +++A++VF  M +R +VS+ S
Sbjct: 157 DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTS 216

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+ Y +     EA+KL+E M  E +  D +T+  +L+ CA    L+ G  +H    E  
Sbjct: 217 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND 276

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               ++V NAL+DMYAKCG++  A  VFS MR +D++SWN++I GY  +   +EA+S F 
Sbjct: 277 LGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFN 336

Query: 281 QMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
            +L    F PD  T   +L  C+     ++G E  H  + R            LVD+Y +
Sbjct: 337 LLLEEKRFSPDERTVACVLPACASLSAFDKGRE-IHGYIMRNGYFSDRHVANSLVDMYAK 395

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            G L  A  + +  +  D V W  ++    +H       IA+ N ++     A +   ++
Sbjct: 396 CGALLLAHMLFDDIASKDLVSWTVMIAGYGMH-GFGKEAIALFNQMRQAGIEADEISFVS 454

Query: 400 TIYACT 405
            +YAC+
Sbjct: 455 LLYACS 460


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 191/527 (36%), Positives = 295/527 (55%), Gaps = 29/527 (5%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F ++       W++++  F  +  PL AI  Y  M    + + D       ++AC   +
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGV-KGDEVVMIGVIQACTAAR 223

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            +     +HG ++R G    VV +T+L+  YA NG+++ A  VF  M  R+ VSW+++IS
Sbjct: 224 NVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMIS 283

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            + Q     EAL+L+  M+   +  D   LV  L +C+++G L +G  +H      GF+ 
Sbjct: 284 GFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVH------GFIV 337

Query: 224 SVY-----VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
             +     +G A +DMY+KCG+L SA  +F+ +  RD++ WN+MI   G HGRG +A++ 
Sbjct: 338 RRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTL 397

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F++M   G  PD  TF  LL   SH GLVEEG  +F  MV+ + + P  KHY CLVDL  
Sbjct: 398 FQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLA 457

Query: 339 RAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           R+G +E+A +++ TS  ++P   +W  LL  C  ++ +E+GE    N+++L+    G   
Sbjct: 458 RSGLVEEASDLL-TSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLA 516

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           L++ +YA TK  + V + RKL+K +G K  PG S IEI    H FV++D+SHP  + I  
Sbjct: 517 LVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVS 576

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
           K+ ++    + +GY        V     E+  E+  +YHSE+LAIAFGL  T  GT L I
Sbjct: 577 KVAKLDLEMRKMGYIPRTEF--VYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVI 634

Query: 517 VKNLR-------SIAY-----SRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +KNLR       +I Y      R+++VRD  R+HHF+DG+CSC DYW
Sbjct: 635 IKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 157/309 (50%), Gaps = 14/309 (4%)

Query: 68  SPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
           SP  A+  +  +  A+  RPD+ TFT  L AC R+  L   + +      +GY+  V V 
Sbjct: 89  SPASALRVFRALPPAA--RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           ++L+  YA  G +  A  VF  MP RD V+W+++++ +  A   L+A+++Y RMR + V 
Sbjct: 147 SSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVK 206

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
            D   ++ ++ +C     + MG  +H      G    V    +LVDMYAK G LD A  V
Sbjct: 207 GDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRV 266

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F  M  R+ +SW++MI G+  +G+ DEA+  F+ M  +G  PDS   +  L  CS+ G +
Sbjct: 267 FGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFL 326

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCL-----VDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           + G      +V R++       + C+     +D+Y + G L  A  + N  S  D +LW 
Sbjct: 327 KLGRSVHGFIVRRFD-------FNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWN 379

Query: 363 TLLGSCKIH 371
            ++  C  H
Sbjct: 380 AMIACCGAH 388



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 4/257 (1%)

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF-DNMPERDLVSWNSIISCYTQA 168
            LH  +I S      ++S+ L   YA  G + AA S          + +WN+II+ +++ 
Sbjct: 29  RLHALLIVSSSASHTLISS-LAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRR 87

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
                AL+++ R        D  T    LS+CA +G L  G  +   A + G+ + V+V 
Sbjct: 88  GSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           ++L+ +YA+ G +  A  VF RM +RD ++W++M+ G+   G+  +AI  +++M   G  
Sbjct: 147 SSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVK 206

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
            D +  +G++  C+    V  G    H  + R+ ++  +     LVD+Y + G L+ A  
Sbjct: 207 GDEVVMIGVIQACTAARNVRMGAS-VHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACR 265

Query: 349 VINTSSPSDPVLWRTLL 365
           V       + V W  ++
Sbjct: 266 VFGLMVHRNDVSWSAMI 282



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 136/297 (45%), Gaps = 18/297 (6%)

Query: 16  RQAHEIHGEWLLNSYAISVSSSLSYAQL------------LFNQIQNPQTQAWNSLIRAF 63
           R    +HG  L +   + V ++ S   +            +F  + +    +W+++I  F
Sbjct: 226 RMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGF 285

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           AQ+    +A+  + +M  AS  +PD+      L AC  +  L   + +HGF++R     C
Sbjct: 286 AQNGQSDEALRLFRNM-QASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC 344

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
            ++ T  +  Y+  G + +A+ +F+ + +RDL+ WN++I+C        +AL L++ M  
Sbjct: 345 -ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
             +  D  T   LLS+ +H G +  G ++  R+        +      LVD+ A+ G ++
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 243 SAFCVFSRMRKRDVLS-WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
            A  + + M+    ++ W +++ G   + + +   S    +L     PD +  L L+
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNIL--ELQPDDVGVLALV 518


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 294/537 (54%), Gaps = 32/537 (5%)

Query: 44   LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
            +F ++      +WN+++    Q      A+     M+    +     TF+  L     + 
Sbjct: 478  MFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECG-TEFSAVTFSIALILASSLS 536

Query: 104  ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP------------ 151
             +   ++LHG V++ G++    + ++L+  Y   G ++ A  +  ++P            
Sbjct: 537  HVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVS 596

Query: 152  ----ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
                +  +VSW S++S Y     + + LK +  M  E V +D  T+  ++S+CA+ G L 
Sbjct: 597  YKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILE 656

Query: 208  MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
             G  +H    ++G     YVG++L+DMY+K G+LD A+ VF +  + +++ W SMI GY 
Sbjct: 657  FGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYA 716

Query: 268  VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +HG+G  AI  F++ML  G  P+ +TFLG+L  CSH GL+EEG  YF MM   Y + PG+
Sbjct: 717  LHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGV 776

Query: 328  KHYGCLVDLYGRAGKLEKALEVINTSSPSDPV-LWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
            +H   +VDLYGRAG L K    I  +  S    +W++ L SC++H+NVE+G+   + L+Q
Sbjct: 777  EHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQ 836

Query: 387  LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
            +  +  G YVLL+ + A     +  AR R L+   G+K  PG SWI++ +Q+H FV+ D+
Sbjct: 837  VAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDR 896

Query: 447  SHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLA 506
            SHP  D IY  L+ ++ R K IGY+ D  LV       E+  E   ++HSEKLA+ FG+ 
Sbjct: 897  SHPQDDEIYSYLDILIGRLKEIGYSFDVKLVM--QDVEEEQGEVLISHHSEKLAVVFGII 954

Query: 507  TTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             T + T +RI+KNLR            S    R++IVRD  R+HHF+ G CSCGDYW
Sbjct: 955  NTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 186/396 (46%), Gaps = 57/396 (14%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL  YA   S+++++AQ LF++I    TQ W  LI  FA++ S  + +F     + A  +
Sbjct: 330 LLTLYA--KSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSS-EMVFNLFREMQAKGA 386

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+ +T +  LK C     L   + +H +++R+G +  VV+  +++  Y    V E A  
Sbjct: 387 CPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAER 446

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG-----LDGF--------- 191
           +F+ M E D+VSWN +I  Y +A    ++L ++ R+ ++DV      +DG          
Sbjct: 447 LFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHA 506

Query: 192 --TLVCLL------------------SSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
              L C++                  SS +HV    +G  LH +  + GF    ++ ++L
Sbjct: 507 LEQLYCMVECGTEFSAVTFSIALILASSLSHV---ELGRQLHGMVLKFGFDSDGFIRSSL 563

Query: 232 VDMYAKCGNLDSAFCVFS----------------RMRKRDVLSWNSMIVGYGVHGRGDEA 275
           V+MY KCG +D A  +                  +  K  ++SW SM+ GY  +G+ ++ 
Sbjct: 564 VEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDG 623

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F+ M+      D  T   ++  C++ G++E G  + H  V +   +        L+D
Sbjct: 624 LKTFRLMVRELVVVDIRTVTTIISACANAGILEFG-RHVHAYVQKIGHRIDAYVGSSLID 682

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +Y ++G L+ A  V   S+  + V+W +++    +H
Sbjct: 683 MYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALH 718



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 122/277 (44%), Gaps = 31/277 (11%)

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
           LH   +++G  + +  + +L+  YA +  +  A+ +FD +P+R+  +W  +IS + +A  
Sbjct: 311 LHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGS 370

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
                 L+  M+ +    + +TL  +L  C+    L +G  +H      G    V +GN+
Sbjct: 371 SEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNS 430

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           ++D+Y KC   + A  +F  M + DV+SWN MI  Y   G  ++++  F+++        
Sbjct: 431 ILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSW 490

Query: 291 SITFLGLL-CGCSHQGL------VEEGVEY-----------------------FHMMVSR 320
           +    GLL CG     L      VE G E+                        H MV +
Sbjct: 491 NTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLK 550

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           +           LV++Y + G+++KA  +I    P D
Sbjct: 551 FGFDSDGFIRSSLVEMYCKCGRMDKA-SIILRDVPLD 586



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 16/171 (9%)

Query: 2   GLKKHARYVGLNKARQAHEIH---GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNS 58
           G+ +  R+V     +  H I    G  L++ Y  S S SL  A ++F Q   P    W S
Sbjct: 653 GILEFGRHVHAYVQKIGHRIDAYVGSSLIDMY--SKSGSLDDAWMVFRQSNEPNIVMWTS 710

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNK-CQELH----G 113
           +I  +A     + AI  +  ML   +  P+  TF   L AC     + + C+        
Sbjct: 711 MISGYALHGQGMHAIGLFEEMLNQGII-PNEVTFLGVLNACSHAGLIEEGCRYFRMMKDA 769

Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARS-VFDNMPERDLVSWNSIIS 163
           + I  G E C    T+++  Y   G +   ++ +F N        W S +S
Sbjct: 770 YCINPGVEHC----TSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLS 816


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 203/559 (36%), Positives = 314/559 (56%), Gaps = 48/559 (8%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA-SLSRPDTFTF 92
           VS  L YA  +F++IQ+P +  + +LI+ F+ + +P++++  Y  ML   + S    F+ 
Sbjct: 53  VSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSI 112

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              LKAC ++ A ++ +++HG V+++       V  +++R Y   G IE AR VFD MP 
Sbjct: 113 PSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPN 172

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDV-----------------GL--DGFTL 193
           RD+VSWNS+I+ Y +A     A +L++ M   D+                 GL  DG  +
Sbjct: 173 RDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAI 232

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVE--SVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           V +LS+ A +G +  G +LH     M  +E  S ++G+AL+DMY+KCG +++A+ VF  +
Sbjct: 233 VSVLSAIADLGFVEEGKWLHAYV-SMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSI 291

Query: 252 -RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
             +R++  WNSMI G  +HG   EA+  F +M      P+ ITFLGLL  CSH GLVEEG
Sbjct: 292 SHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEG 351

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCK 369
             YF  M  +Y + P I+HYGC++DL+GRAG+LE AL VI N    +D + W+ +L +  
Sbjct: 352 QFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASM 411

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
            H ++EIG+ A    ++L    +  YVLL+ IYA     + VA+ R +++  G+K   G 
Sbjct: 412 KHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGC 471

Query: 430 SWIEIGNQVHKFVVD---DKSHPDADMIYRKLEEIMHRAKFIGYTKD--ESLVAVSGSSS 484
           S + +  +VH+F++    D S+  +  +  K+ E++ R K  GY  D  + L+ +     
Sbjct: 472 SSMLVNGKVHEFLLGKELDSSY--SGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGK 529

Query: 485 EDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVR 532
           E  L      HSEK+AIAFGL        + IVKNLR            S  Y+R +I+R
Sbjct: 530 ESLLN----LHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMR 585

Query: 533 DRVRYHHFRDGLCSCGDYW 551
           D+ R+HHF +G CSC +YW
Sbjct: 586 DQNRFHHFENGCCSCNEYW 604


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/539 (33%), Positives = 299/539 (55%), Gaps = 33/539 (6%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPL------QAIFYYNHMLMASLSRPDTF 90
           +LS A  LF  + +P    +N++I    +  + +      +A+  Y+ +    +  P  F
Sbjct: 267 ALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGM-EPTEF 325

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           TF+  ++AC     +   +++HG V++  ++    + + L+  Y  +G +E     F ++
Sbjct: 326 TFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSV 385

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           P++D+V+W ++IS   Q      AL L+  +    +  D FT+  ++++CA +     G 
Sbjct: 386 PKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGE 445

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +   A + GF     +GN+ + MYA+ G++ +A   F  M   D++SW+++I  +  HG
Sbjct: 446 QIQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHG 505

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
              +A+ FF +M+ A   P+ ITFLG+L  CSH GLV+EG++Y+  M   Y L P IKH 
Sbjct: 506 CARDALRFFNEMVDAKVVPNEITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHC 565

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSD-PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
            C+VDL GRAG+L  A   I  S   D PV+WR+LL SC+IHR++E G++    +++L+ 
Sbjct: 566 TCVVDLLGRAGRLADAEAFIRDSIFHDEPVIWRSLLASCRIHRDMERGQLVADRIMELQP 625

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
           +S+  YV L  IY    +    ++ R ++K  G+K  PG SWIE+ + VH FV  DKSHP
Sbjct: 626 SSSASYVNLYNIYLDAGELSLASKIRDVMKERGVKKEPGLSWIELRSGVHSFVAGDKSHP 685

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS--SEDFLEKSSA---YHSEKLAIAFG 504
           +++ IY KL E++        +K + L A   SS  S+D +    +   +HSEKLA+A G
Sbjct: 686 ESNAIYSKLAEML--------SKIDKLTATDASSTKSDDTIRNEQSWMNWHSEKLAVALG 737

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L   P    +R++KNLR            S +  R++++RD +R+HHFRDG CSC DYW
Sbjct: 738 LIHLPQSAPIRVMKNLRVCRDCHLTMKLISKSEKREIVLRDAIRFHHFRDGSCSCADYW 796



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 206/455 (45%), Gaps = 19/455 (4%)

Query: 5   KHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFA 64
           +HA  V  +  R AH     +L N+   +      +A+ L +++      ++N LI A++
Sbjct: 31  RHAAAVHAHIVR-AHPSPSLFLRNTLLAAYCRLGGHARRLLDEMPRTNAVSFNLLIDAYS 89

Query: 65  QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCV 124
           ++  P  ++  +     ++  R D FT+   L AC R   L + + +H   +  G    V
Sbjct: 90  RAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALSVLEGIAGGV 149

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
            VS +L+  YA  G +  AR VFD   ERD VSWN+++S Y +A    + L+++  MR  
Sbjct: 150 FVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRS 209

Query: 185 DVGLDGFTLVCLLSSCAHVG--ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
            +GL+ F L  ++  CA      +++   +H    + GF   V++ +A+V MYAK G L 
Sbjct: 210 GIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALS 269

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRG------DEAISFFKQMLMAGFHPDSITFLG 296
            A  +F  +   +V+ +N+MI G              EA+S + ++   G  P   TF  
Sbjct: 270 EAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSS 329

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
           ++  C+  G +E G +  H  V ++  +        L+DLY  +G +E       +    
Sbjct: 330 VIRACNLAGDIEFG-KQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQ 388

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA--SAGDYVLLATIYACTKDEEGVART 414
           D V W  ++  C  +   E+ E A+    +L  A      + + + + AC      VART
Sbjct: 389 DVVTWTAMISGCVQN---ELFERALTLFHELLGAGLKPDPFTISSVMNACAS--LAVART 443

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQ-VHKFVVDDKSH 448
            + I+    K+  G  +  +GN  +H +      H
Sbjct: 444 GEQIQCFATKSGFG-RFTAMGNSCIHMYARSGDVH 477


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 201/570 (35%), Positives = 294/570 (51%), Gaps = 64/570 (11%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSY---AQLLFNQIQNPQTQAWN 57
           +GL+ H+    L   R  +  H        AIS+ S       A  +F+ + +    +WN
Sbjct: 141 LGLQIHSAVAKLRLDRNVYVAHS-------AISMYSRCGRPEDAYRVFDGMPHRDVVSWN 193

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
           ++I  FA+     +AI  +   ++   S PD  T    L A                   
Sbjct: 194 AMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPA------------------- 234

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177
                          G A    I   R VFDNM  ++L+SWN++++ Y    FH++A++L
Sbjct: 235 --------------MGNAKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVEL 280

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
           +  M  ++V  D  TL  +L  C  + A ++G  +H I        ++ + NAL+DMYA 
Sbjct: 281 FMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYAS 340

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
           CG L  A  +F  M  RDV+SW S+I  YG HG G EA+  F++ML  G  PDSI F+ +
Sbjct: 341 CGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAV 400

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS--SP 355
           L  CSH GL+ +G  YF  M SRY++ P  +HY C+VDL GRAG + +A + I T    P
Sbjct: 401 LAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEP 460

Query: 356 SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415
           ++ V W  LL +C+IH N++IG +A  NL  L     G YVLL+ +YA       V   R
Sbjct: 461 NERV-WGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVR 519

Query: 416 KLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK--D 473
            ++ + GIK  PG S +E+G+QVH F + D+ HP ++MIY KL+E++ + + +GY    +
Sbjct: 520 SVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEVE 579

Query: 474 ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------ 521
            +L  V     ED L    + HSEKLAIAF L  T  GT +R+  NLR            
Sbjct: 580 ATLHDVEEEDKEDHL----SVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLI 635

Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           SI   R+++++D  R HH   G+CSCGDYW
Sbjct: 636 SIITCREIVLKDTNRIHHIVQGVCSCGDYW 665



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 101/214 (47%), Gaps = 11/214 (5%)

Query: 96  LKACERVKALNKCQELHG---FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF----- 147
           L AC     L   +  H     ++   +      +  L++ YAA   +  A +V      
Sbjct: 19  LAACRAPAHLPSLRAAHARLLVLLHPSHPSAAHANVKLIQAYAACSALPLAHTVLESSSP 78

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGA 205
           D       V +N +I   T +S H +AL L+  MR        D +T    L SC+    
Sbjct: 79  DGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKD 138

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L +G+ +H    ++    +VYV ++ + MY++CG  + A+ VF  M  RDV+SWN+MI G
Sbjct: 139 LLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAG 198

Query: 266 YGVHGRGDEAISFFKQ-MLMAGFHPDSITFLGLL 298
           +   G  D AI  FKQ +++ G  PD+ T  G+L
Sbjct: 199 FARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGIL 232


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 192/543 (35%), Positives = 292/543 (53%), Gaps = 25/543 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL+ Y  S    L  A+ +F ++ +    ++ S+I  +A+     +A+  +  M    +S
Sbjct: 337 LLDMY--SKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD +T T  L  C R + L++ + +H ++  +     + VS  LM  YA  G ++ A  
Sbjct: 395 -PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAEL 453

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLY----ERMRFEDVGLDGFTLVCLLSSCA 201
           VF  M  +D++SWN+II  Y++  +  EAL L+    E  RF     D  T+ C+L +CA
Sbjct: 454 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSP---DERTVACVLPACA 510

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
            + A + G  +H      G+    +V N+LVDMYAKCG L  A  +F  +  +D++SW  
Sbjct: 511 SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTV 570

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI GYG+HG G EAI+ F QM  AG   D I+F+ LL  CSH GLV+EG  +F++M    
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIA 380
            ++P ++HY C+VD+  R G L KA   I N   P D  +W  LL  C+IH +V++ E  
Sbjct: 631 KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKV 690

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + + +LE  + G YVL+A IYA  +  E V R RK I   G++  PG SWIEI  +V+ 
Sbjct: 691 AEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNI 750

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           FV  D S+P+ + I   L ++  R    GY+       +     E   E++   HSEKLA
Sbjct: 751 FVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEK--EEALCGHSEKLA 808

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           +A G+ ++  G  +R+ KNLR            S    R++++RD  R+H F+DG CSC 
Sbjct: 809 MALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCR 868

Query: 549 DYW 551
            +W
Sbjct: 869 GFW 871



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 176/329 (53%), Gaps = 2/329 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F++++  +   WN L+   A+S     +I  +  M M+S    D++TF+   K
Sbjct: 145 LKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKM-MSSGVEMDSYTFSCVSK 203

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +   +++++  ++LHGF+++SG+     V  +L+  Y  N  +++AR VFD M ERD++S
Sbjct: 204 SFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVIS 263

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNSII+ Y       + L ++ +M    + +D  T+V + + CA    +++G  +H I  
Sbjct: 264 WNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGV 323

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +  F       N L+DMY+KCG+LDSA  VF  M  R V+S+ SMI GY   G   EA+ 
Sbjct: 324 KACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVK 383

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++M   G  PD  T   +L  C+   L++EG +  H  +   +L   I     L+D+Y
Sbjct: 384 LFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG-KRVHEWIKENDLGFDIFVSNALMDMY 442

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLG 366
            + G +++A  V +     D + W T++G
Sbjct: 443 AKCGSMQEAELVFSEMRVKDIISWNTIIG 471



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 180/366 (49%), Gaps = 4/366 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+++      +WNS+I  +  +    + +  +  ML++ +   D  T       C 
Sbjct: 249 ARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGI-EIDLATIVSVFAGCA 307

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             + ++  + +H   +++ + R       L+  Y+  G +++A++VF  M +R +VS+ S
Sbjct: 308 DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTS 367

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+ Y +     EA+KL+E M  E +  D +T+  +L+ CA    L+ G  +H    E  
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND 427

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
               ++V NAL+DMYAKCG++  A  VFS MR +D++SWN++I GY  +   +EA+S F 
Sbjct: 428 LGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFN 487

Query: 281 QMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
            +L    F PD  T   +L  C+     ++G E  H  + R            LVD+Y +
Sbjct: 488 LLLEEKRFSPDERTVACVLPACASLSAFDKGRE-IHGYIMRNGYFSDRHVANSLVDMYAK 546

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            G L  A  + +  +  D V W  ++    +H       IA+ N ++     A +   ++
Sbjct: 547 CGALLLAHMLFDDIASKDLVSWTVMIAGYGMH-GFGKEAIALFNQMRQAGIEADEISFVS 605

Query: 400 TIYACT 405
            +YAC+
Sbjct: 606 LLYACS 611



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 159/340 (46%), Gaps = 8/340 (2%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D  T    L+ C   K+L   +E+  F+  +G+     + + L   Y   G ++ A  VF
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D +     + WN +++   ++     ++ L+++M    V +D +T  C+  S + + +++
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  LH    + GF E   VGN+LV  Y K   +DSA  VF  M +RDV+SWNS+I GY 
Sbjct: 213 GGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +G  ++ +S F QML++G   D  T + +  GC+   L+  G    H +  +       
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-RAVHSIGVKACFSRED 331

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE-IAMKNLVQ 386
           +    L+D+Y + G L+ A  V    S    V + +++      R    GE + +   ++
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAG--YAREGLAGEAVKLFEEME 389

Query: 387 LEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGI 423
            E  S   Y + A +  C +    +EG  R  + IK N +
Sbjct: 390 EEGISPDVYTVTAVLNCCARYRLLDEG-KRVHEWIKENDL 428



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 1/178 (0%)

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
           +D  TL  +L  CA   +L  G  +       GFV    +G+ L  MY  CG+L  A  V
Sbjct: 92  IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F  ++    L WN ++      G    +I  FK+M+ +G   DS TF  +    S    V
Sbjct: 152 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 211

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             G E  H  + +            LV  Y +  +++ A +V +  +  D + W +++
Sbjct: 212 HGG-EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSII 268


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 193/517 (37%), Positives = 285/517 (55%), Gaps = 27/517 (5%)

Query: 55   AWNSLIRAFAQS-LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
            +WNSLI A A S  S L+A+  +  M+ A    P+  TF   L A   +      +++H 
Sbjct: 558  SWNSLIGALADSEPSMLEAVESFLVMMRAGWD-PNRVTFITILAAVSSLSLHELGKQIHA 616

Query: 114  FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER-DLVSWNSIISCYTQASFHL 172
             V++        +   L+  Y   G +    ++F  M +R D VSWNS+IS Y       
Sbjct: 617  LVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLP 676

Query: 173  EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
            +A+ +   M  +   LDGFT   +LS+CA V  L  G+ +H  +        + +G+ALV
Sbjct: 677  KAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALV 736

Query: 233  DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
            DMYAKCG +D A   F  M  R++ SWNSMI GY  HG G +++  F QM + G  PD +
Sbjct: 737  DMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHV 796

Query: 293  TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
            TF+G+L  CSH GLV EG  +F  M   Y L P ++H+ C+VDL GR G+L K  + +N 
Sbjct: 797  TFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLN- 855

Query: 353  SSPSDP--VLWRTLLGSC--KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408
              P  P  ++WRT+LG+C     RN  +G  A + L+++E  +A +Y+LL+ +YA     
Sbjct: 856  QMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKW 915

Query: 409  EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFI 468
            + VA+TR  ++   +K   G SW+ + + VH FV  DKSHP+ D+IY KL+E+  + +  
Sbjct: 916  DDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLA 975

Query: 469  GYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----- 521
            GY  +   +L  + G S E+ L    +YHSEK+A+AF L T P    +RI+KNLR     
Sbjct: 976  GYIPETRFALYDLEGESKEELL----SYHSEKIAVAFVL-TRPSKMPIRILKNLRVCGDC 1030

Query: 522  -------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                   S    R +++RD  R+HHF +G CSCGD+W
Sbjct: 1031 HSAFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 171/358 (47%), Gaps = 19/358 (5%)

Query: 19  HEIH-GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYN 77
           H+++ G  L++ +A   + S+ YA+ +F ++      + N LI    +     +A+  + 
Sbjct: 317 HDLYVGSALVSGFA--KAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFM 374

Query: 78  HMLMASLSRPDTFTFTFT----LKACERVKALNKCQELHGFVIRSGYERC-VVVSTNLMR 132
            M  +    P+++    T        E  K   K  E+H F+IRSG     + +   L+ 
Sbjct: 375 EMKDSVELNPNSYMIILTAFPEFHVLENGK--RKGSEVHAFLIRSGLLNAQIAIGNGLIN 432

Query: 133 GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192
            YA  G I  A  VF  M  +D V+WNS+I+   Q    LEA+K ++ MR  ++    FT
Sbjct: 433 MYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFT 492

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
           ++  LSSCA +G +++G  LH    ++G    V V NAL+ +Y +CG +      FS M 
Sbjct: 493 MISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLML 552

Query: 253 KRDVLSWNSMIVGYGVHGRGD----EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
             D +SWNS+I   G     +    EA+  F  M+ AG+ P+ +TF+ +L   S   L E
Sbjct: 553 DYDHVSWNSLI---GALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHE 609

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLL 365
            G +  H +V + N+         L+  YG+ G +     + +  S   D V W +++
Sbjct: 610 LGKQ-IHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMI 666



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 179/377 (47%), Gaps = 13/377 (3%)

Query: 2   GLKKHARYVGL-NKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           GLK   +  GL +K +  +++    +L S   +    + YA+  F+ I      + NS+I
Sbjct: 191 GLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMI 250

Query: 61  RAFAQSLSPLQAIFYYNHM---LMASLSRPDTFTFTFTLKA-CERVKA-LNKCQELHGFV 115
             + Q    + A   ++ M   +M    +P+ +TF   + A C    + L   ++L   V
Sbjct: 251 SVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRV 310

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
            +SG+   + V + L+ G+A  G I  A+++F  M  R++VS N +I    +     EA+
Sbjct: 311 EKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAV 370

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALN----MGIFLHRIACEMGFVES-VYVGNA 230
           +L+  M+ + V L+  + + +L++      L      G  +H      G + + + +GN 
Sbjct: 371 ELFMEMK-DSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNG 429

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           L++MYAKCG ++ A  VF  M  +D ++WNSMI G   + +  EA+  F++M     +P 
Sbjct: 430 LINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPS 489

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
           + T +  L  C+  G +  G E  H    +  L   +     L+ LYG  G +++  +  
Sbjct: 490 NFTMISALSSCASLGWISVG-EQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAF 548

Query: 351 NTSSPSDPVLWRTLLGS 367
           +     D V W +L+G+
Sbjct: 549 SLMLDYDHVSWNSLIGA 565



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 165/366 (45%), Gaps = 22/366 (6%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           +ELH  + ++G+   + +   L+  YA  G + + R VFD MP R+LVSW+ +IS YT+ 
Sbjct: 93  EELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRN 152

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG--ALNMGIFLHRIACEMGFVESVY 226
               EA +L+ +M  +    + +    ++ +C   G   L  G+ +H +  +  +V  V 
Sbjct: 153 RMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVT 212

Query: 227 VGNALVDMYAKC-GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF----KQ 281
             N L+ MY    G +D A   F  +  R+++S NSMI  Y   G    A   F    K+
Sbjct: 213 ASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKE 272

Query: 282 MLMAGFHPDSITFLGLLCG-CSHQGLVEEGVEYFHMMVSRYNLKPGIKHY----GCLVDL 336
           ++  G  P+  TF  L+   CS   L   G+     +++R   K G  H       LV  
Sbjct: 273 VMGDGLKPNEYTFGSLISATCS---LANSGLVLLEQLLTRVE-KSGFLHDLYVGSALVSG 328

Query: 337 YGRAGKLEKALEVINTSSPSDPV-LWRTLLGSCKIHRNVEIGEI--AMKNLVQLEAASAG 393
           + +AG +  A  +    S  + V L   ++G  +  R  E  E+   MK+ V+L   S  
Sbjct: 329 FAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNS-- 386

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            Y+++ T +      E   R    + +  I++    + I IGN +        +  DA +
Sbjct: 387 -YMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACV 445

Query: 454 IYRKLE 459
           ++R ++
Sbjct: 446 VFRLMD 451


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 176/435 (40%), Positives = 257/435 (59%), Gaps = 15/435 (3%)

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           ++ G+A +G +   + +FD MPERD++SWN+++  Y       EAL+ ++RMR   +  D
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
             TLV +LS+ A +  L  G  +H I   +    ++ +G AL+DMYAKCG ++ +  +F 
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            M +RDV +WN MI G   HG G +A++ F++ L  G HP ++TF+G+L  CS  GLV+E
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKE 180

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSC 368
           G  YF MM   Y ++P ++HYGC+VDL GRAG + +A++VI + + S DPVLW  +L +C
Sbjct: 181 GRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCAC 240

Query: 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPG 428
           +IH   E+GE     L++L+    G YV LA+IYA ++  E V R R+L+         G
Sbjct: 241 RIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAG 300

Query: 429 WSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFL 488
           WS IE   +VH+FV   + H  +  I + LE I  R    GY  + S   V     E+  
Sbjct: 301 WSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVS--PVLHDIGEEEK 358

Query: 489 EKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVR 536
           E +   HSE+LAIAFGL  T  G+ +RIVKNLR            S  + R++IVRD  R
Sbjct: 359 ENAIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSR 418

Query: 537 YHHFRDGLCSCGDYW 551
           +HHF++G CSC DYW
Sbjct: 419 FHHFKEGKCSCLDYW 433



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 140/342 (40%), Gaps = 41/342 (11%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
            +S  Q LF+++      +WN+++ A+  +    +A+  +  M  + L  PD  T    L
Sbjct: 10  QVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLV-PDEATLVTML 68

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            A  ++  L   Q +H  +        + + T L+  YA  G IE +R +F+NMP RD+ 
Sbjct: 69  SASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVS 128

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           +WN +I          +AL L+ER   E +     T V +L++C+  G +          
Sbjct: 129 TWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVK--------- 179

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                 E  +    + D Y     ++   C+       D+L    ++          EAI
Sbjct: 180 ------EGRHYFQMMTDSYGIEPEMEHYGCMV------DLLGRAGLVF---------EAI 218

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK-HYGCLVD 335
              + M ++   PD + +  +LC C   GL E G +  + ++    L P    HY  L  
Sbjct: 219 KVIESMAIS---PDPVLWAMVLCACRIHGLAELGEKIGNRLI---ELDPTYDGHYVQLAS 272

Query: 336 LYGRAGKLEKALEV---INTSSPSDPVLWRTLLGSCKIHRNV 374
           +Y  + K E  + V   +   + S    W  +    K+HR V
Sbjct: 273 IYANSRKWEDVVRVRRLMAERNTSKVAGWSLIEARGKVHRFV 314


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 201/551 (36%), Positives = 287/551 (52%), Gaps = 55/551 (9%)

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQE 110
           P    WN L+    +S   L A+     M       PD    +  L A   VK ++  ++
Sbjct: 116 PNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFF-PDATGVSCALSAVGDVKEVSVGKQ 174

Query: 111 LHGFVIRSG--YERCVVVS-----------------------------TNLMRGYAANGV 139
           +HG+V+++G   + CVV +                               L+ G + N  
Sbjct: 175 VHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQ 234

Query: 140 IEAARSVFDNM----PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195
           +  A  +F        E ++VSW SI++C  Q    LEA+ L+  M+   V  +  T+ C
Sbjct: 235 VSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPC 294

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L + A+V AL  G   H  +   GF+  VYVG+ALVDMYAKCG    A  +F  M  R+
Sbjct: 295 VLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRN 354

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           V+SWN+MI GY +HG    A+  F  M      PD +TF  +L  CS  GL EEG  YF+
Sbjct: 355 VVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFN 414

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNV 374
            M   + + P ++HY C+V L GR+GKL++A ++IN      D  +W +LLGSC+++ NV
Sbjct: 415 EMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNV 474

Query: 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEI 434
            + E+A + L QLE  +AG+YVLL+ IYA  K  +GV R R  +K+ G+K   G SWIEI
Sbjct: 475 LLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEI 534

Query: 435 GNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSS 492
            N+VH  +  D SHP    I  KL ++      +G+  ++D  L  V     ++ L    
Sbjct: 535 KNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNIL---- 590

Query: 493 AYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHF 540
           A HSEKLA+A GL +T  GT LR++KNLR            S    R++ VRD  R+HHF
Sbjct: 591 AVHSEKLAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHF 650

Query: 541 RDGLCSCGDYW 551
           +DG CSCGDYW
Sbjct: 651 KDGKCSCGDYW 661



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 144/370 (38%), Gaps = 79/370 (21%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           PD       LK+C    A    + LH   + SG      V+++L+  Y   G   AARSV
Sbjct: 18  PDPHLLPSALKSC---PAQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSV 74

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV-------------------G 187
           FD MPE+++V W+++I+ Y+       A  L E+MR   V                    
Sbjct: 75  FDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRA 134

Query: 188 LDGFTLV----------------CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
           LD  T +                C LS+   V  +++G  +H    + G      V  AL
Sbjct: 135 LDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTAL 194

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           +DMY KCG  D    VF      DV S N+++ G   + +  EA+  F++ +  G   + 
Sbjct: 195 IDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNV 254

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSR------------------------------Y 321
           +++  ++  C   G   E V+ F  M S                               +
Sbjct: 255 VSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCF 314

Query: 322 NLKPGIKHY----GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIG 377
           +L+ G  H       LVD+Y + GK   A  + +     + V W  ++G   +H     G
Sbjct: 315 SLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMH-----G 369

Query: 378 EIAMKNLVQL 387
           + A  N VQL
Sbjct: 370 DAA--NAVQL 377



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 7/246 (2%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQ----AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR 86
            +S ++ +S A LLF +      +    +W S++    Q+   L+A+  +  M    +  
Sbjct: 228 GLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGV-E 286

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P++ T    L A   V AL   +  H F +R G+   V V + L+  YA  G    AR++
Sbjct: 287 PNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTI 346

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD MP R++VSWN++I  Y        A++L+  M+      D  T  C+L +C+  G  
Sbjct: 347 FDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLT 406

Query: 207 NMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIV 264
             G  + + +    G    +     +V +  + G LD A+ + + M  + D   W S++ 
Sbjct: 407 EEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLG 466

Query: 265 GYGVHG 270
              V+G
Sbjct: 467 SCRVYG 472



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 97/236 (41%), Gaps = 39/236 (16%)

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           LY  +R      D   L   L SC    A  +   LH  A   G  E  +V ++L+  Y 
Sbjct: 7   LYHFLRHVSFPPDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYI 63

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           + G   +A  VF RM +++V+ W+++I GY   G  + A    +QM  AG  P+ IT+ G
Sbjct: 64  RLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNG 123

Query: 297 LLCGCSHQGLVEEGVEYFHMM------------------------------VSRYNLKPG 326
           L+ G +  G   + V     M                              V  Y +K G
Sbjct: 124 LVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAG 183

Query: 327 IKHYGC----LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
            +   C    L+D+YG+ G+ ++ + V + SS  D      L+    + RN ++ E
Sbjct: 184 CRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAG--LSRNAQVSE 237


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 191/527 (36%), Positives = 295/527 (55%), Gaps = 29/527 (5%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F ++       W++++  F  +  PL AI  Y  M    + + D       ++AC   +
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGV-KGDEVVMIGVIQACTAAR 223

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            +     +HG ++R G    VV +T+L+  YA NG+++ A  VF  M  R+ VSW+++IS
Sbjct: 224 NVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMIS 283

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            + Q     EAL+L+  M+   +  D   LV  L +C+++G L +G  +H      GF+ 
Sbjct: 284 GFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVH------GFIV 337

Query: 224 SVY-----VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
             +     +G A +DMY+KCG+L SA  +F+ +  RD++ WN+MI   G HGRG +A++ 
Sbjct: 338 RRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTL 397

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F++M   G  PD  TF  LL   SH GLVEEG  +F  MV+ + + P  KHY CLVDL  
Sbjct: 398 FQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLA 457

Query: 339 RAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           R+G +E+A +++ TS  ++P   +W  LL  C  ++ +E+GE    N+++L+    G   
Sbjct: 458 RSGLVEEASDLL-TSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLA 516

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           L++ +YA TK  + V + RKL+K +G K  PG S IEI    H FV++D+SHP  + I  
Sbjct: 517 LVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVS 576

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
           K+ ++    + +GY        V     E+  E+  +YHSE+LAIAFGL  T  GT L I
Sbjct: 577 KVAKLDLEMRKMGYIPRTEF--VYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVI 634

Query: 517 VKNLR-------SIAY-----SRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +KNLR       +I Y      R+++VRD  R+HHF+DG+CSC DYW
Sbjct: 635 IKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 157/309 (50%), Gaps = 14/309 (4%)

Query: 68  SPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
           SP  A+  +  +  A+  RPD+ TFT  L AC R+  L   + +      +GY+  V V 
Sbjct: 89  SPASALRVFRALPPAA--RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
           ++L+  YA  G +  A  VF  MP RD V+W+++++ +  A   L+A+++Y RMR + V 
Sbjct: 147 SSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVK 206

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
            D   ++ ++ +C     + MG  +H      G    V    +LVDMYAK G LD A  V
Sbjct: 207 GDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRV 266

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F  M  R+ +SW++MI G+  +G+ DEA+  F+ M  +G  PDS   +  L  CS+ G +
Sbjct: 267 FGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFL 326

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCL-----VDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           + G      +V R++       + C+     +D+Y + G L  A  + N  S  D +LW 
Sbjct: 327 KLGRSVHGFIVRRFD-------FNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWN 379

Query: 363 TLLGSCKIH 371
            ++  C  H
Sbjct: 380 AMIACCGAH 388



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 4/257 (1%)

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF-DNMPERDLVSWNSIISCYTQA 168
            LH  +I S      ++S+ L   YA  G + AA S          + +WN+II+ +++ 
Sbjct: 29  RLHALLIVSSSASHTLISS-LAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRR 87

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
                AL+++ R        D  T    LS+CA +G L  G  +   A + G+ + V+V 
Sbjct: 88  GSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           ++L+ +YA+ G +  A  VF RM +RD ++W++M+ G+   G+  +AI  +++M   G  
Sbjct: 147 SSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVK 206

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
            D +  +G++  C+    V  G    H  + R+ ++  +     LVD+Y + G L+ A  
Sbjct: 207 GDEVVMIGVIQACTAARNVRMGAS-VHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACR 265

Query: 349 VINTSSPSDPVLWRTLL 365
           V       + V W  ++
Sbjct: 266 VFGLMVHRNDVSWSAMI 282



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 136/297 (45%), Gaps = 18/297 (6%)

Query: 16  RQAHEIHGEWLLNSYAISVSSSLSYAQL------------LFNQIQNPQTQAWNSLIRAF 63
           R    +HG  L +   + V ++ S   +            +F  + +    +W+++I  F
Sbjct: 226 RMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGF 285

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           AQ+    +A+  + +M  AS  +PD+      L AC  +  L   + +HGF++R     C
Sbjct: 286 AQNGQSDEALRLFRNM-QASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC 344

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
            ++ T  +  Y+  G + +A+ +F+ + +RDL+ WN++I+C        +AL L++ M  
Sbjct: 345 -ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
             +  D  T   LLS+ +H G +  G ++  R+        +      LVD+ A+ G ++
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 243 SAFCVFSRMRKRDVLS-WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
            A  + + M+    ++ W +++ G   + + +   S    +L     PD +  L L+
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILE--LQPDDVGVLALV 518


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/527 (35%), Positives = 285/527 (54%), Gaps = 16/527 (3%)

Query: 38   LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
            L +A  +F +++     +W ++I  +AQ     +A+  +  M    +   D   F   + 
Sbjct: 524  LDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGI-HSDNIGFASAIS 582

Query: 98   ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            AC  ++ALN+ Q++H     SGY   + V   L+  YA  G +  A   FD +  +D +S
Sbjct: 583  ACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNIS 642

Query: 158  WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
            WNS+IS + Q+    EAL L+ +M      ++ FT    +S+ A+V  + +G  +H +  
Sbjct: 643  WNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMII 702

Query: 218  EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            + G      V N L+ +YAKCGN+D A   F  M +++ +SWN+M+ GY  HG G +A+S
Sbjct: 703  KTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALS 762

Query: 278  FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
             F+ M   G  P+ +TF+G+L  CSH GLV+EG++YF  M   + L P  +HY C+VDL 
Sbjct: 763  LFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLL 822

Query: 338  GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            GR+G L +A   +       D ++ RTLL +C +H+N++IGE A  +L++LE   +  YV
Sbjct: 823  GRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYV 882

Query: 397  LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
            LL+ +YA T       RTR+++K  G+K  PG SWIE+ N VH F   D+ HP+ D IY 
Sbjct: 883  LLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYE 942

Query: 457  KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
             L ++   A   GY    + +       +     +   HSEKLAIAFGL +    T + +
Sbjct: 943  YLRDLNELAAENGYIPQTNSLLNDAERRQK--GPTQIIHSEKLAIAFGLLSLSSSTPIHV 1000

Query: 517  VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             KNLR            S    R ++VRD  R+HHF+ G+CSC DYW
Sbjct: 1001 FKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 171/335 (51%), Gaps = 2/335 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ A+ +F+ +Q   + +W +++   +QS    +A+  +  M  + +  P  + F+  L 
Sbjct: 221 LNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGV-YPTPYIFSSVLS 279

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC +V+     ++LHG V++ G+     V   L+  Y+  G    A  VF+ M +RD VS
Sbjct: 280 ACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVS 339

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           +NS+IS  +Q  +  +AL+L+++M  + +  D  T+  LLS+C+ VGAL +G   H  A 
Sbjct: 340 YNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAI 399

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G    + +  AL+D+Y KC ++ +A   F      +V+ WN M+V YG+    +E+  
Sbjct: 400 KAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFK 459

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM M G  P+  T+  +L  CS    V+ G E  H  V +   +  +     L+D+Y
Sbjct: 460 IFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLG-EQIHTQVLKTGFQFNVYVSSVLIDMY 518

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372
            + GKL+ AL++       D V W  ++     H 
Sbjct: 519 AKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHE 553



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 221/472 (46%), Gaps = 17/472 (3%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           S +  A   F   +      WN ++ A+    +  ++   +  M M  +  P+ FT+   
Sbjct: 421 SDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGI-EPNQFTYPSI 479

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+ C  ++A++  +++H  V+++G++  V VS+ L+  YA  G ++ A  +F  + E+D+
Sbjct: 480 LRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDV 539

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSW ++I+ Y Q     EAL L++ M+ + +  D       +S+CA + ALN G  +H  
Sbjct: 540 VSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQ 599

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           AC  G+ + + VGNALV +YA+CG +  A+  F ++  +D +SWNS+I G+   G  +EA
Sbjct: 600 ACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEA 659

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +S F QM  AG   +S TF   +   ++   V+ G +  H M+ +       +    L+ 
Sbjct: 660 LSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQ-IHAMIIKTGHDSETEVSNVLIT 718

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           LY + G ++ A          + + W  +L     H +        +++ QL        
Sbjct: 719 LYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQL-GVLPNHV 777

Query: 396 VLLATIYACTK---DEEGVARTRKLIKSNGIKTTPGWSWIEIG--------NQVHKFVVD 444
             +  + AC+     +EG+   + + + +G+   P      +         ++  +FV +
Sbjct: 778 TFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEE 837

Query: 445 DKSHPDADMIYRKLEE--IMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY 494
               PDA M+ R L    I+H+   IG      L+ +    S  ++  S+ Y
Sbjct: 838 MPIQPDA-MVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMY 888



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 166/326 (50%), Gaps = 4/326 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +FN +      ++NSLI   +Q     +A+  +  M +  L +PD  T    L AC 
Sbjct: 325 AEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCL-KPDCVTVASLLSACS 383

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            V AL   ++ H + I++G    +++   L+  Y     I+ A   F +    ++V WN 
Sbjct: 384 SVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNV 443

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           ++  Y       E+ K++ +M+ E +  + FT   +L +C+ + A+++G  +H    + G
Sbjct: 444 MLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTG 503

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F  +VYV + L+DMYAK G LD A  +F R++++DV+SW +MI GY  H +  EA++ FK
Sbjct: 504 FQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFK 563

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKPGIKHYGCLVDLYGR 339
           +M   G H D+I F   +  C+    + +G + +    VS Y+    + +   LV LY R
Sbjct: 564 EMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGN--ALVSLYAR 621

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLL 365
            GK+  A    +     D + W +L+
Sbjct: 622 CGKVRDAYFAFDKIFSKDNISWNSLI 647



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 173/369 (46%), Gaps = 4/369 (1%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  +F+++       WN ++  F       + +  +  ML   + +PD  T+   L+
Sbjct: 119 LDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKV-KPDERTYAGVLR 177

Query: 98  ACERVKALNKCQE-LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            C        C E +H   I  GYE  + V   L+  Y  NG + +A+ VFD + +RD V
Sbjct: 178 GCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSV 237

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW +++S  +Q+    EA+ L+ +M    V    +    +LS+C  V    +G  LH + 
Sbjct: 238 SWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLV 297

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF    YV NALV +Y++ GN   A  VF+ M +RD +S+NS+I G    G  D+A+
Sbjct: 298 LKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKAL 357

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             FK+M +    PD +T   LL  CS  G +  G + FH    +  +   I   G L+DL
Sbjct: 358 ELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ-FHSYAIKAGMSSDIILEGALLDL 416

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           Y +   ++ A E   ++   + VLW  +L +  +  N+      +   +Q+E      + 
Sbjct: 417 YVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLN-ESFKIFTQMQMEGIEPNQFT 475

Query: 397 LLATIYACT 405
             + +  C+
Sbjct: 476 YPSILRTCS 484



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 140/296 (47%), Gaps = 16/296 (5%)

Query: 78  HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
           H++     R ++ T+ + L  C      +   +LHG +++ G+   VV+   LM  Y A 
Sbjct: 57  HLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAF 116

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G ++ A +VFD MP R L  WN ++  +         L L+ RM  E V  D  T   +L
Sbjct: 117 GDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVL 176

Query: 198 SSCAHVGALNMGIF----LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
             C   G  ++       +H      G+  S++V N L+D+Y K G L+SA  VF  ++K
Sbjct: 177 RGC---GGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQK 233

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           RD +SW +M+ G    G  +EA+  F QM  +G +P    F  +L  C+     + G E 
Sbjct: 234 RDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVG-EQ 292

Query: 314 FHMMVSRYNLKPG--IKHYGC--LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            H +V    LK G  ++ Y C  LV LY R G    A +V N     D V + +L+
Sbjct: 293 LHGLV----LKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLI 344



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 88/217 (40%), Gaps = 1/217 (0%)

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
           T + LL  C   G  + G  LH    +MGF   V +   L+D+Y   G+LD A  VF  M
Sbjct: 70  TYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEM 129

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
             R +  WN ++  +         +  F++ML     PD  T+ G+L GC    +    V
Sbjct: 130 PVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCV 189

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           E  H     +  +  +     L+DLY + G L  A +V +     D V W  +L      
Sbjct: 190 EKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLS-Q 248

Query: 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408
              E   + +   +         Y+  + + ACTK E
Sbjct: 249 SGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVE 285


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/531 (35%), Positives = 293/531 (55%), Gaps = 31/531 (5%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++ A+ LF+++      +W ++I  +AQ+   + A   +  M       PD    ++T  
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVM-------PDRNEVSWTAM 242

Query: 98  ACERVKA--LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
               ++A  +   ++L      +  +  V     +M G+  +G+++AA+++F+ M  RD 
Sbjct: 243 LVGYIQAGHVEDAEDL----FNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDD 298

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
            +W+++I  Y Q  F +EAL  +  M    +  +  + + +L+ CA +   + G  LH  
Sbjct: 299 GTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAA 358

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
                F   V+  +AL+ MY KCGNLD A  VF+    +DV+ WNSMI GY  HG G+EA
Sbjct: 359 MLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEA 418

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F  + +A   PD IT++G+L  CS+ G V+EG E F+ M    +++ G  HY C+VD
Sbjct: 419 LGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVD 478

Query: 336 LYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L GRAG +++AL++IN + P +P  ++W  L+G+C++H+N EI E+A K L++LE  SAG
Sbjct: 479 LLGRAGLVDEALDLIN-NMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAG 537

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK-SHPDAD 452
            YVLL+ IY  T   E  +  RK I S  +  +PG SWIE    VH F   D  SHP+  
Sbjct: 538 PYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEHA 597

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
           +I   LEE+       GY+ D S V       E+   +S  YHSE+ A+A+GL   P G 
Sbjct: 598 IILNMLEELDGLLMESGYSADGSFVL--HDVDEEQKAQSLRYHSERQAVAYGLLKVPAGM 655

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +R++KNLR            +   SR++I+RD  R+HHF+DGLCSC DYW
Sbjct: 656 PIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 101/464 (21%), Positives = 195/464 (42%), Gaps = 81/464 (17%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+  F+ +    T ++N+LI  + ++  P  A+  ++ M    L   +      +L+   
Sbjct: 36  ARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAGLSLR--- 92

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV--------------------- 139
           R    +    L    +       VV  T+L+RGY  +G+                     
Sbjct: 93  RHTLPDAAAALASIPLPPS----VVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTV 148

Query: 140 ----------IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
                     +  AR +FD MP++D+V+  +++S Y QA    EA  L++ M   +V   
Sbjct: 149 LLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNV--- 205

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRI----------ACEMGFVESVYVG----------- 228
             +   ++S  A  G + +   L  +          A  +G++++ +V            
Sbjct: 206 -VSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPD 264

Query: 229 ------NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
                 NA++  + + G +D+A  +F RM  RD  +W++MI  Y  +    EA+S F++M
Sbjct: 265 HPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREM 324

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
           L  G  P+  +F+ +L  C+     + G E  H  + R +    +     L+ +Y + G 
Sbjct: 325 LCRGIRPNYTSFISILTVCAALATADYGRE-LHAAMLRCSFDTDVFAVSALITMYIKCGN 383

Query: 343 LEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLAT 400
           L+KA  V N   P D V+W +++     H    +GE A+   + ++L   +      +  
Sbjct: 384 LDKAKRVFNMFEPKDVVMWNSMITGYAQH---GLGEEALGIFDDLRLARMAPDGITYIGV 440

Query: 401 IYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           + AC+   + V   R++  S G+ ++     I +G   +  +VD
Sbjct: 441 LTACSYTGK-VKEGREIFNSMGMNSS-----IRLGAAHYSCMVD 478



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 31/236 (13%)

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G IE AR+ FD MP R   S+N++I+ Y +      AL L+ RM   D+G          
Sbjct: 31  GNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLG---------- 80

Query: 198 SSCAHVGALNMGIFLHR--------IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
                  AL  G+ L R            +    SV    +L+  Y + G L  A  +F 
Sbjct: 81  ----SYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFH 136

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
           +M +R+ +++  ++ G+   GR +EA   F +M       D +    +L G    G + E
Sbjct: 137 QMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMP----DKDVVARTAMLSGYCQAGRITE 192

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
               F  M  R      +  +  ++  Y + GK+  A ++       + V W  +L
Sbjct: 193 ARALFDEMPKR-----NVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAML 243



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 46/235 (19%)

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM- 282
           +V   NA +    + GN++ A   F  M  R   S+N++I GY  +   D A+  F +M 
Sbjct: 16  AVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMP 75

Query: 283 ---------LMAGFH-------------------PDSITFLGLLCGCSHQGLVEEGVEYF 314
                    L+AG                     P  ++F  LL G    GL+ + +  F
Sbjct: 76  SRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLF 135

Query: 315 HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT--LLGSCKIHR 372
           H M  R ++      Y  L+  +  AG++ +A ++ +   P   V+ RT  L G C+  R
Sbjct: 136 HQMPERNHVT-----YTVLLGGFLDAGRVNEARKLFD-EMPDKDVVARTAMLSGYCQAGR 189

Query: 373 NVE----IGEIAMKNLVQLEA-----ASAGDYVLLATIYACTKDEEGVARTRKLI 418
             E      E+  +N+V   A     A  G  +L   ++    D   V+ T  L+
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLV 244



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 11/132 (8%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L  A+ +FN  +      WNS+I  +AQ     +A+  ++ + +A ++ PD  T+   L
Sbjct: 383 NLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMA-PDGITYIGVL 441

Query: 97  KACERVKALNKCQELHGFV-----IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
            AC     + + +E+   +     IR G      +   L R     G+++ A  + +NMP
Sbjct: 442 TACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRA----GLVDEALDLINNMP 497

Query: 152 -ERDLVSWNSII 162
            E D + W +++
Sbjct: 498 VEPDAIIWGALM 509


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 179/529 (33%), Positives = 284/529 (53%), Gaps = 21/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+L+F ++      AW  ++  + Q+   + A+  +  M+   +   D + F+  LK
Sbjct: 162 LEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVEL-DEYVFSIVLK 220

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  ++ LN  +++HG +++ G E  V V T L+  Y     +E+A   F+ + E + VS
Sbjct: 221 ACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVS 280

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W+++I+ Y Q     EALK +E +R   V ++ FT   +  +C+ +   N G   H  A 
Sbjct: 281 WSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAI 340

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +   V   +  +A++ MY++CG LD A  VF  +   D ++W ++I GY   G   EA+ 
Sbjct: 341 KSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALK 400

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++M   G  P+++TF+ +L  CSH GLV EG +Y   M S Y +   I HY C+VD+Y
Sbjct: 401 LFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIY 460

Query: 338 GRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            RAG L++ALE+I +   S D + W+ LLG C  +RN+EIGE+A +NL QL+      Y+
Sbjct: 461 SRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYI 520

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           L+  +YA     +  A  RK++    ++     SWI +  +VH+F+V DK HP  + IY 
Sbjct: 521 LMFNLYASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYS 580

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY--HSEKLAIAFGLATTPDGTSL 514
           KLE +          K+E+ +      S    E+      HSE+LA+AFGL +TP    +
Sbjct: 581 KLEALNDSV-----IKEETGLLTEEDVSNSLPERKEQLLVHSERLALAFGLISTPSSAPV 635

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + KNLR            S+   R+++VRD  R+HHF+ G CSC DYW
Sbjct: 636 VVFKNLRACKDCHDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 163/330 (49%), Gaps = 2/330 (0%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           SL+ A+ +F++++     +WN++I A+A++    +    +++ML    ++P+  T+   L
Sbjct: 60  SLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELE-TKPNGSTYIGFL 118

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           ++      L   +++H   IRSG      V+T +   Y   G +E A  VF+ M E++ V
Sbjct: 119 RSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAV 178

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           +W  I+  YTQA   ++AL L+ +M  E V LD +    +L +CA +  LN G  +H   
Sbjct: 179 AWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHI 238

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            ++G    V VG  LVD Y KC NL+SA   F  + + + +SW+++I GY   G  +EA+
Sbjct: 239 VKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEAL 298

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F+ +       +S T+  +   CS       G +  H    + +L         ++ +
Sbjct: 299 KTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQA-HADAIKSSLVAYQHGESAMITM 357

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           Y R G+L+ A  V  +    D V W  ++ 
Sbjct: 358 YSRCGRLDYATRVFESIDDPDAVAWTAIIA 387



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 132/277 (47%), Gaps = 4/277 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
            +AC ++K+L   +  H  + R+       +  ++++ Y   G +  AR VFD M ER+L
Sbjct: 17  FEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMRERNL 76

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSWN+IIS Y +     +   ++  M   +   +G T +  L S  +   L +G  +H  
Sbjct: 77  VSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSH 136

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A   G   +  V  A+ +MY KCG L+ A  VF +M +++ ++W  ++VGY    R  +A
Sbjct: 137 AIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDA 196

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV-EYFHMMVSRYNLKPGIKHYGCLV 334
           ++ F +M+  G   D   F  +L  C+  GL E       H  + +  L+  +     LV
Sbjct: 197 LALFAKMVNEGVELDEYVFSIVLKACA--GLEELNFGRQIHGHIVKLGLESEVSVGTPLV 254

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKI 370
           D Y +   LE A +     S  + V W  L+ G C++
Sbjct: 255 DFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQM 291


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 194/553 (35%), Positives = 299/553 (54%), Gaps = 49/553 (8%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LFN+++     +W++LI  + Q+    +A+  +  M  A+    D       L AC R+ 
Sbjct: 245 LFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEM-NANGIMVDEVVVLSVLSACSRLL 303

Query: 104 ALNKCQELHGFVIRSG--------------YERCVVVST-----------------NLMR 132
            +   + +HG V++ G              Y  C  V T                 +++ 
Sbjct: 304 VVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMIS 363

Query: 133 GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192
           GY   G IE AR++FD+MP++D VSW+++IS Y Q     E L L++ M+ E    D   
Sbjct: 364 GYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETI 423

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
           LV ++S+C H+ AL+ G ++H    + G   ++ +G  L++MY K G ++ A  VF  + 
Sbjct: 424 LVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLE 483

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           ++ V +WN++I+G  ++G  D+++  F +M   G  P+ ITF+ +L  C H GLV+EG  
Sbjct: 484 EKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHR 543

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL--WRTLLGSCKI 370
           +F+ M+  + + P IKHYGC+VDL GRAG L++A E+I  S P  P +  W  LLG+CK 
Sbjct: 544 HFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIE-SMPMAPDVSTWGALLGACKK 602

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS 430
           + + E GE   + LV+L     G  VLL+ IYA   +   V   R +++ +G+  TPG S
Sbjct: 603 YGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCS 662

Query: 431 WIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEK 490
            IE   +VH+F+  DK+HP  + I   L+E+  + K  GY  D   V++     E   E 
Sbjct: 663 MIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEK--ET 720

Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYH 538
           +   HSEKLAIAFGL      T +RIVKNLR            S A++R+++VRDR R+H
Sbjct: 721 TLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFH 780

Query: 539 HFRDGLCSCGDYW 551
           HF+ G CSC DYW
Sbjct: 781 HFKQGSCSCMDYW 793



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 180/417 (43%), Gaps = 99/417 (23%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE-RV 102
           +F+ I+NP     N++++ + Q  SP +AI+ Y  ML ++++  D +T+    ++C  R+
Sbjct: 82  IFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVA-ADNYTYPILFQSCSIRL 140

Query: 103 KALN-KCQELHGFVIRSGYERCVVVSTNLMR----------------------------- 132
              + KC + H  V++ G++  V +   L+                              
Sbjct: 141 AEFDGKCIQDH--VLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSM 198

Query: 133 --GYAANGVIEAARSVFDNMPER-------------------------------DLVSWN 159
             GY   G +E A+ V+D MPER                               DLVSW+
Sbjct: 199 LAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWS 258

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++ISCY Q   + EAL L++ M    + +D   ++ +LS+C+ +  +  G  +H +  ++
Sbjct: 259 ALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKV 318

Query: 220 GFVESVYVGNALVDMYA-------------------------------KCGNLDSAFCVF 248
           G    V + NAL+ MY+                               KCG ++ A  +F
Sbjct: 319 GIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALF 378

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
             M  +D +SW++MI GY    R  E +  F++M + G  PD    + ++  C+H   ++
Sbjct: 379 DSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALD 438

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +G ++ H  + +  LK  I     L+++Y + G +E ALEV           W  L+
Sbjct: 439 QG-KWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALI 494



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 123/266 (46%), Gaps = 11/266 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A+ LF+ + +    +W+++I  +AQ     + +  +  M +   ++PD       + 
Sbjct: 371 IEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEG-TKPDETILVSVIS 429

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  + AL++ + +H ++ ++G +  +++ T L+  Y   G +E A  VF  + E+ + +
Sbjct: 430 ACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVST 489

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR--- 214
           WN++I          ++LK +  M+   V  +  T V +L +C H+G ++ G   HR   
Sbjct: 490 WNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEG---HRHFN 546

Query: 215 -IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDVLSWNSMIVGYGVHGRG 272
            +  E     ++     +VD+  + G L  A  +   M    DV +W +++     +G  
Sbjct: 547 SMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDN 606

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLL 298
           +      ++++    HPD   F  LL
Sbjct: 607 ETGERIGRKLV--ELHPDHDGFNVLL 630



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 138/334 (41%), Gaps = 52/334 (15%)

Query: 84  LSRP---DTFTFTFTLKACERVKALNKCQELHGF------VIRSGYERCVVVSTNLMRGY 134
           LS+P    TFT   TL        L KCQ +  F      +I SG+ +    ++ L++  
Sbjct: 9   LSKPFKIPTFTLKPTLTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFS 68

Query: 135 AANGVIEAARS--VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192
                I   +S  +F ++   +    N+++  Y Q +   +A+ +Y+ M   +V  D +T
Sbjct: 69  TELPFININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYT 128

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
              L  SC+   A   G  +     ++GF   VY+ N L++MYA CGNL  A  VF    
Sbjct: 129 YPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSS 188

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
             D++SWNSM+ GY + G  +EA   + +M      P+                      
Sbjct: 189 VLDMVSWNSMLAGYVLVGNVEEAKDVYDRM------PER--------------------- 221

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372
                         +     ++ L+G+ G +E+A ++ N     D V W  L+   + + 
Sbjct: 222 -------------NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNE 268

Query: 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
             E   I  K +         + V+L+ + AC++
Sbjct: 269 MYEEALILFKEM-NANGIMVDEVVVLSVLSACSR 301


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 29/527 (5%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+ +      AW++++  F  +  P++A+  Y+ M    ++  D       ++AC    
Sbjct: 168 VFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAE-DEVVMVGVIQACTLTG 226

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
                  +HG  +R G    VV++T+L+  YA NG  + AR VF  MP R+ VSWN++IS
Sbjct: 227 NTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALIS 286

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            + Q     EAL L+  M    +  D   LV  L +CA VG L +G  +H      GF+ 
Sbjct: 287 GFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIH------GFIL 340

Query: 224 -----SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
                   +G A++DMY+KCG+L+SA  +F+++  RD++ WN+MI   G HG G +A++ 
Sbjct: 341 RRLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALAL 400

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F+++   G  PD  TF  LL   SH GLVEEG  +F  M++ + ++P  KH  C+VDL  
Sbjct: 401 FQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLA 460

Query: 339 RAGKLEKALEVINT--SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           R+G +E+A E++ +  + P+ P+ W  LL  C  ++ +E+GE   K +++ +    G   
Sbjct: 461 RSGLVEEANEMLASMHTEPTIPI-WVALLSGCLNNKKLELGETIAKKILESQPEDIGVLA 519

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           L++ +YA  K  + V   RKL+K +G K  PG+S IE+    H FV++D+SHP    I +
Sbjct: 520 LVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILK 579

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            + ++    + +GY        V     ED  E+  +YHSE+LAIAFGL  T  GT L I
Sbjct: 580 MISKLSFEMRKMGYVPRTEF--VYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVI 637

Query: 517 VKNLR-------SIAY-----SRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +KNLR       +I Y      R+++VRD  R+HHF+DG CSCGDYW
Sbjct: 638 IKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 166/317 (52%), Gaps = 4/317 (1%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           AWN+L+ A +++ SP  A+  +    + S +RPD+ TFT  L AC R+  L+  + +   
Sbjct: 79  AWNALLAARSRAGSPGAALRVFR--ALPSSARPDSTTFTLALTACARLGDLDAAEAVRVR 136

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
              +GY R V V + L+  Y+  G +  A  VFD MP +D V+W+++++ +  A   +EA
Sbjct: 137 AFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEA 196

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
           L +Y RMR   V  D   +V ++ +C   G   MG  +H      G    V +  +LVDM
Sbjct: 197 LGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDM 256

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAK G+ D A  VF  M  R+ +SWN++I G+  +G  DEA+  F++M  +G  PDS   
Sbjct: 257 YAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGAL 316

Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
           +  L  C+  G ++ G      ++ R   +  +     ++D+Y + G LE A ++ N  S
Sbjct: 317 VSALLACADVGFLKLGKSIHGFILRRLEFQCILG--TAVLDMYSKCGSLESARKLFNKLS 374

Query: 355 PSDPVLWRTLLGSCKIH 371
             D VLW  ++  C  H
Sbjct: 375 SRDLVLWNAMIACCGTH 391



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 142/300 (47%), Gaps = 10/300 (3%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           MG   H R+  L    +   +    L++ YA   +     A+ +F  +      +WN+LI
Sbjct: 230 MGASVHGRF--LRHGMRMDVVIATSLVDMYA--KNGHFDVARQVFRMMPYRNAVSWNALI 285

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             FAQ+    +A+  +  M  + L +PD+      L AC  V  L   + +HGF++R   
Sbjct: 286 SGFAQNGHADEALDLFREMSTSGL-QPDSGALVSALLACADVGFLKLGKSIHGFILRRLE 344

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
            +C ++ T ++  Y+  G +E+AR +F+ +  RDLV WN++I+C        +AL L++ 
Sbjct: 345 FQC-ILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQE 403

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIF-LHRIACEMGFVESVYVGNALVDMYAKCG 239
           +    +  D  T   LLS+ +H G +  G F   R+  E G   +      +VD+ A+ G
Sbjct: 404 LNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSG 463

Query: 240 NLDSAFCVFSRMRKRDVLS-WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
            ++ A  + + M     +  W +++ G   + + +   +  K++L +   P+ I  L L+
Sbjct: 464 LVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILES--QPEDIGVLALV 521


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 196/570 (34%), Positives = 306/570 (53%), Gaps = 63/570 (11%)

Query: 39  SYAQLLFNQIQNPQTQA--WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S+A+ LF++I +    +  + +LIR       PL A+ +Y  M   +L   D       L
Sbjct: 66  SHARKLFDRIPHSHKDSVDYTALIRCS----HPLDALRFYLQMRQRALPL-DGVALICAL 120

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI---------------- 140
            AC ++   N   ++H  V++ G+ R   V   +M GY   G++                
Sbjct: 121 GACSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVV 180

Query: 141 ---------------EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE- 184
                          E+ + VFD MPER+ V+W  +I  Y  + F  EA  L + M F  
Sbjct: 181 SWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGC 240

Query: 185 --DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE-MGFVESVYVGNALVDMYAKCGNL 241
               GL+  TL  +LS+C+  G +++G ++H  A + +G+   V VG +LVDMYAKCG +
Sbjct: 241 GFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRI 300

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
            +A  VF  M +R+V++WN+M+ G  +HG G   +  F  M+     PD++TF+ LL  C
Sbjct: 301 SAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACMV-EEVKPDAVTFMALLSSC 359

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVL 360
           SH GLVE+G +YFH +   Y ++P I+HY C+VDL GRAG+LE+A +++     P + V+
Sbjct: 360 SHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLEEAEDLVKKLPIPPNEVV 419

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
             +LLG+C  H  + +GE  M+ LVQ++  +   ++LL+ +YA     +     RK++K+
Sbjct: 420 LGSLLGACYAHGKLRLGEKIMRELVQMDPLNTEYHILLSNMYALCGKADKANSLRKVLKN 479

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
            GI+  PG S I +  Q+H+F+  DKSHP    IY KL++++ + +  GY  + +   + 
Sbjct: 480 RGIRKVPGMSSIYVDGQLHRFIAGDKSHPRTADIYMKLDDMICKLRLAGYVPNTNCQVLF 539

Query: 481 GSSSED-------FLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------ 521
           G S+ D        +E+    HSEKLA+ FGL +TP  + L I KNLR            
Sbjct: 540 GCSNGDDCMEAFEEVEQVLFTHSEKLALCFGLMSTPSSSPLCIFKNLRICQDCHSAIKIA 599

Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           S  Y R+++VRDR R+H F+ G CSC DYW
Sbjct: 600 SDIYKREIVVRDRYRFHSFKQGSCSCSDYW 629



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 157/378 (41%), Gaps = 49/378 (12%)

Query: 89  TFTFTFTLKACERVKALNKCQELHGFVIRSG--YERCVVVSTNLMRGYAANGVIEAARSV 146
              F   L+ C R  A+   ++LH     SG  +     +   L+  YA+  +   AR +
Sbjct: 12  ALIFRSLLRQCARASAVRPGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSHARKL 71

Query: 147 FDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
           FD +P   +D V + ++I C    S  L+AL+ Y +MR   + LDG  L+C L +C+ +G
Sbjct: 72  FDRIPHSHKDSVDYTALIRC----SHPLDALRFYLQMRQRALPLDGVALICALGACSKLG 127

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG------------------------- 239
             N+   +H    + GF+    V N ++D Y KCG                         
Sbjct: 128 DSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLE 187

Query: 240 ------NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA---GFHPD 290
                  ++S   VF  M +R+ ++W  +I GY   G   EA    K+M+     GF  +
Sbjct: 188 GVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLN 247

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
           SIT   +L  CS  G V  G       V       G+     LVD+Y + G++  AL V 
Sbjct: 248 SITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVF 307

Query: 351 NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV-QLEAASAGDYVLLATIYACTKD-- 407
                 + V W  +L    +H    +G++ ++     +E         +A + +C+    
Sbjct: 308 RHMPRRNVVAWNAMLCGLAMH---GMGKVVVEMFACMVEEVKPDAVTFMALLSSCSHSGL 364

Query: 408 -EEGVARTRKLIKSNGIK 424
            E+G      L ++ GI+
Sbjct: 365 VEQGWQYFHDLERAYGIR 382


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 306/562 (54%), Gaps = 50/562 (8%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           +++  A+ LF++         N++   + +     +A+  +N ++M S  RPD  +    
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFN-LMMDSGVRPDRISMLSA 343

Query: 96  LKACERVKALNKCQELHGFVIRSGYE-------------------------------RCV 124
           + +C +++ +   +  HG+V+R+G+E                               + V
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF- 183
           V   +++ GY  NG ++AA   F+ MPE+++VSWN+IIS   Q S   EA++++  M+  
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           E V  DG T++ + S+C H+GAL++  +++    + G    V +G  LVDM+++CG+ +S
Sbjct: 464 EGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPES 523

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F+ +  RDV +W + I    + G  + AI  F  M+  G  PD + F+G L  CSH
Sbjct: 524 AMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSH 583

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
            GLV++G E F+ M+  + + P   HYGC+VDL GRAG LE+A+++I    P +P  V+W
Sbjct: 584 GGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIE-DMPMEPNDVIW 642

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
            +LL +C++  NVE+   A + +  L     G YVLL+ +YA       +A+ R  +K  
Sbjct: 643 NSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEK 702

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
           G++  PG S I+I  + H+F   D+SHP+   I   L+E+  RA  +G+  D S V +  
Sbjct: 703 GLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDV 762

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
              E     S   HSEKLA+A+GL ++  GT++RIVKNLR            S  Y+R++
Sbjct: 763 DEKEKIFMLSR--HSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREI 820

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           I+RD  R+H+ R G CSCGD+W
Sbjct: 821 ILRDNNRFHYIRQGKCSCGDFW 842



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 179/353 (50%), Gaps = 9/353 (2%)

Query: 29  SYAISVSSSLSYAQLLFNQIQNPQTQ-AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP 87
           S  +    SLS+A+ +F   ++  T   +NSLIR +A S    +AI  +  M+ + +S P
Sbjct: 74  SCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGIS-P 132

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D +TF F L AC + +A     ++HG +++ GY + + V  +L+  YA  G +++AR VF
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGAL 206
           D M ER++VSW S+I  Y +  F  +A+ L+ RM R E+V  +  T+VC++S+CA +  L
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDL 252

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
             G  ++      G   +  + +ALVDMY KC  +D A  +F      ++   N+M   Y
Sbjct: 253 ETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNY 312

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
              G   EA+  F  M+ +G  PD I+ L  +  CS    +  G +  H  V R   +  
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWG-KSCHGYVLRNGFESW 371

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEI 379
                 L+D+Y +  + + A  + +  S    V W +++        VE GE+
Sbjct: 372 DNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAG-----YVENGEV 419



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 158/356 (44%), Gaps = 33/356 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F+++      +W S+I  +A+      A+  +  M+      P++ T    + 
Sbjct: 185 LDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVIS 244

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC +++ L   ++++ F+  SG E   ++ + L+  Y     I+ A+ +FD     +L  
Sbjct: 245 ACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDL 304

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
            N++ S Y +     EAL ++  M    V  D  +++  +SSC+ +  +  G   H    
Sbjct: 305 CNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVL 364

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD---- 273
             GF     + NAL+DMY KC   D+AF +F RM  + V++WNS++ GY  +G  D    
Sbjct: 365 RNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWE 424

Query: 274 ---------------------------EAISFFKQML-MAGFHPDSITFLGLLCGCSHQG 305
                                      EAI  F  M    G + D +T + +   C H G
Sbjct: 425 TFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
            ++   ++ +  + +  ++  ++    LVD++ R G  E A+ + N+ +  D   W
Sbjct: 485 ALDLA-KWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAW 539



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 149/317 (47%), Gaps = 10/317 (3%)

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA---ARSVFDNMP 151
           +LK C   K +++ +  H  + + G +  V   T L+      G  E+   A+ VF+N  
Sbjct: 38  SLKNC---KTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSE 94

Query: 152 ERDLV-SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
                  +NS+I  Y  +    EA+ L+ RM    +  D +T    LS+CA   A   GI
Sbjct: 95  SYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGI 154

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H +  +MG+ + ++V N+LV  YA+CG LDSA  VF  M +R+V+SW SMI GY    
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214

Query: 271 RGDEAIS-FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
              +A+  FF+ +      P+S+T + ++  C+    +E G E  +  +    ++     
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETG-EKVYAFIRNSGIEVNDLM 273

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
              LVD+Y +   ++ A  + +    S+  L    + S  + + +    + + NL+    
Sbjct: 274 VSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNA-MASNYVRQGLTREALGVFNLMMDSG 332

Query: 390 ASAGDYVLLATIYACTK 406
                  +L+ I +C++
Sbjct: 333 VRPDRISMLSAISSCSQ 349


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 214/564 (37%), Positives = 300/564 (53%), Gaps = 37/564 (6%)

Query: 19   HEIHGEWLLN--SYAISVSSSL-----------SYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
             +IHGE +       +SVS++L            Y ++ F   +  Q  +WNS I A A 
Sbjct: 476  QQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQV-SWNSFIGALAT 534

Query: 66   S-LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCV 124
            S  S LQAI Y+  M+ A   +P+  TF   L A   +  L   +++H  +++       
Sbjct: 535  SEASVLQAIKYFLEMMQAGW-KPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDN 593

Query: 125  VVSTNLMRGYAANGVIEAARSVFDNMPER-DLVSWNSIISCYTQASFHLEALKLYERMRF 183
             +   L+  Y     +E    +F  M ER D VSWN++IS Y       +A+ L   M  
Sbjct: 594  AIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQ 653

Query: 184  EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
            +   LD FTL  +LS+CA V  L  G+ +H  A        V VG+ALVDMYAKCG +D 
Sbjct: 654  KGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDY 713

Query: 244  AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
            A   F  M  R++ SWNSMI GY  HG G +A+  F QM   G  PD +TF+G+L  CSH
Sbjct: 714  ASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSH 773

Query: 304  QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
             GLV+EG E+F  M   Y L P I+H+ C+VDL GRAG ++K  E I T  P +P  ++W
Sbjct: 774  VGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKT-MPMNPNALIW 832

Query: 362  RTLLGSC--KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
            RT+LG+C     RN E+G  A K L++LE  +A +YVLL+ ++A     E V   R  ++
Sbjct: 833  RTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMR 892

Query: 420  SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
            +  +K   G SW+ + + VH FV  D++HP+ + IY KL+EIM++ + +GY  +      
Sbjct: 893  NAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALY 952

Query: 480  SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
                       S  YHSEKLAIAF L T      +RI+KNLR            S   +R
Sbjct: 953  DLELENKEELLS--YHSEKLAIAFVL-TRQSELPIRIIKNLRVCGDCHTAFKYISNIVNR 1009

Query: 528  DLIVRDRVRYHHFRDGLCSCGDYW 551
             +I+RD  R+HHF  G+CSC DYW
Sbjct: 1010 QIILRDSNRFHHFDGGICSCQDYW 1033



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 182/381 (47%), Gaps = 25/381 (6%)

Query: 10  VGLNKARQAHEIHG---------EWLLNSYAISV----SSSLSYAQLLFNQIQNPQTQAW 56
           +G N  +   EIHG         + +L++  +S+    S+S+  A+ +F +I+   + +W
Sbjct: 153 LGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASW 212

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLS---RPDTFTF-TFTLKACERVK-ALNKCQEL 111
           NS+I  + +    + A   ++ M   +     RP+ +TF +    AC  V   L   +++
Sbjct: 213 NSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQM 272

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
              + +S + + + V + L+ G+A  G+I++A+ +F+ M +R+ V+ N ++    +    
Sbjct: 273 LARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQG 332

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN----MGIFLHRIACEMGFVES-VY 226
            EA K+++ M+ + V ++  +   LLS+      L      G  +H        V+  + 
Sbjct: 333 EEAAKIFKEMK-DLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWIL 391

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           +GNALV++YAKC  +D+A  +F  M  +D +SWNS+I G   + R +EA++ F  M   G
Sbjct: 392 IGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNG 451

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
             P   + +  L  C+  G +  G +  H    +  L   +     L+ LY     +E+ 
Sbjct: 452 MVPSKFSVISTLSSCASLGWIMLG-QQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEY 510

Query: 347 LEVINTSSPSDPVLWRTLLGS 367
            +V       D V W + +G+
Sbjct: 511 QKVFFLMPEYDQVSWNSFIGA 531



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 166/348 (47%), Gaps = 23/348 (6%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           + +L  AQ LF+++      +W+ L+  +AQ+  P +A   +  ++ A L  P+ +    
Sbjct: 87  AGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGL-LPNHYAIGS 145

Query: 95  TLKACERV--KALNKCQELHGFVIRSGYERCVVVSTNLMRGYA-ANGVIEAARSVFDNMP 151
            L+AC+ +    L    E+HG + +S Y   +V+S  LM  Y+  +  I+ AR VF+ + 
Sbjct: 146 ALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIK 205

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG----------FTLVCLLSSCA 201
            +   SWNSIIS Y +    + A KL+  M+ E   L+            T+ C L  C 
Sbjct: 206 MKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDC- 264

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
             G   +   L RI  +  FV+ +YVG+ALV  +A+ G +DSA  +F +M  R+ ++ N 
Sbjct: 265 --GLTLLEQMLARIE-KSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNG 321

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE----GVEYFHMM 317
           ++VG     +G+EA   FK+M       ++ ++  LL   +    ++E    G E    +
Sbjct: 322 LMVGLARQHQGEEAAKIFKEM-KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYL 380

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +    +   I     LV+LY +   ++ A  +       D V W +++
Sbjct: 381 IRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSII 428



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 173/373 (46%), Gaps = 13/373 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+++F Q+ +      N L+   A+     +A   +  M    L   +  ++   L A  
Sbjct: 304 AKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEM--KDLVEINASSYAVLLSAFT 361

Query: 101 RVKALN----KCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
               L     K QE+H ++IR+   +  +++   L+  YA    I+ ARS+F  MP +D 
Sbjct: 362 EFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDT 421

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSWNSIIS         EA+  +  MR   +    F+++  LSSCA +G + +G  +H  
Sbjct: 422 VSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGE 481

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV-HGRGDE 274
             + G    V V NAL+ +YA+   ++    VF  M + D +SWNS I           +
Sbjct: 482 GIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQ 541

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           AI +F +M+ AG+ P+ +TF+ +L   S   L+E G +  H ++ ++++         L+
Sbjct: 542 AIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQ-IHALILKHSVADDNAIENTLL 600

Query: 335 DLYGRAGKLEKALEVI--NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
             YG+  ++E   E+I    S   D V W  ++ S  IH  +    + +  L+  +    
Sbjct: 601 AFYGKCEQMEDC-EIIFSRMSERRDEVSWNAMI-SGYIHNGILHKAMGLVWLMMQKGQRL 658

Query: 393 GDYVLLATIYACT 405
            D+ L   + AC 
Sbjct: 659 DDFTLATVLSACA 671



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 154/342 (45%), Gaps = 20/342 (5%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
            +LH  + ++G    V     L+  +   G + +A+ +FD MP+++LVSW+ ++S Y Q 
Sbjct: 59  HQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQN 118

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA--LNMGIFLHRIACEMGFVESVY 226
               EA  L+  +    +  + + +   L +C  +G   L +G+ +H +  +  +   + 
Sbjct: 119 GMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMV 178

Query: 227 VGNALVDMYAKC-GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
           + N L+ MY+ C  ++D A  VF  ++ +   SWNS+I  Y   G    A   F  M   
Sbjct: 179 LSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQRE 238

Query: 286 GFH----PDSITFLGLL-CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY---GCLVDLY 337
                  P+  TF  L+   CS   LV+ G+     M++R      +K       LV  +
Sbjct: 239 ATELNCRPNEYTFCSLVTVACS---LVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGF 295

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVEIGEI--AMKNLVQLEAASAGD 394
            R G ++ A  +       + V    L+ G  + H+  E  +I   MK+LV++ A+S   
Sbjct: 296 ARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYA- 354

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
            VLL+     +  +EG  R  + + +  I+      WI IGN
Sbjct: 355 -VLLSAFTEFSNLKEG-KRKGQEVHAYLIRNALVDVWILIGN 394


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 186/547 (34%), Positives = 293/547 (53%), Gaps = 55/547 (10%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WN ++  F +S    +A+  +  +       PD  T +  L +    + LN  + +HG+
Sbjct: 219 SWNGILSGFNRSGYHKEAVVMFQKIHHLGFC-PDQVTVSSVLPSVGDSEMLNMGRLIHGY 277

Query: 115 VIRSGY--ERCVV-----------------------------VSTNLMRGYAANGVIEAA 143
           VI+ G   ++CV+                             V    + G + NG+++ A
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337

Query: 144 RSVFDNMPER----DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
             +F+   E+    ++VSW SII+   Q    +EAL+L+  M+   V  +  T+  +L +
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           C ++ AL  G   H  A  +  +++V+VG+AL+DMYAKCG ++ +  VF+ M  ++++ W
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCW 457

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           NS++ G+ +HG+  E +S F+ ++     PD I+F  LL  C   GL +EG +YF MM  
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSE 517

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGE 378
            Y +KP ++HY C+V+L GRAGKL++A ++I       D  +W  LL SC++  NV++ E
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAE 577

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
           IA + L  LE  + G YVLL+ IYA       V   R  ++S G+K  PG SWI++ N+V
Sbjct: 578 IAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRV 637

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK--DESLVAVSGSSSEDFLEKSSAYHS 496
           +  +  DKSHP  D I  K++EI    +  G+    D +L  V     E  L      HS
Sbjct: 638 YTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWG----HS 693

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
           EKLA+ FGL  TPDGT L+++KNLR            S    R++ +RD  R+HHF+DG+
Sbjct: 694 EKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGI 753

Query: 545 CSCGDYW 551
           CSCGD+W
Sbjct: 754 CSCGDFW 760



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 164/401 (40%), Gaps = 72/401 (17%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A L+   I +P   +++SLI A  ++    Q+I  ++ M    L  PD+       K C 
Sbjct: 69  ADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLI-PDSHVLPNLFKVCA 127

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD------ 154
            + A    +++H     SG +    V  ++   Y   G +  AR VFD M ++D      
Sbjct: 128 ELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSA 187

Query: 155 -----------------------------LVSWNSIISCYTQASFHLEALKLYERMRFED 185
                                        +VSWN I+S + ++ +H EA+ +++++    
Sbjct: 188 LLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLG 247

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN----- 240
              D  T+  +L S      LNMG  +H    + G ++   V +A++DMY K G+     
Sbjct: 248 FCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGII 307

Query: 241 --------------------------LDSAFCVFSRMRKR----DVLSWNSMIVGYGVHG 270
                                     +D A  +F   +++    +V+SW S+I G   +G
Sbjct: 308 SLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNG 367

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
           +  EA+  F++M +AG  P+ +T   +L  C +   +  G    H    R +L   +   
Sbjct: 368 KDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHG-RSTHGFAVRVHLLDNVHVG 426

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
             L+D+Y + G++  +  V N     + V W +L+    +H
Sbjct: 427 SALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMH 467



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 101/209 (48%)

Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
           K  + H  +++SG +    +S  L+  Y+       A  V  ++P+  + S++S+I   T
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALT 92

Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
           +A    +++ ++ RM    +  D   L  L   CA + A  +G  +H ++C  G     +
Sbjct: 93  KAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           V  ++  MY +CG +  A  VF RM  +DV++ ++++  Y   G  +E +    +M  +G
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSG 212

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
              + +++ G+L G +  G  +E V  F 
Sbjct: 213 IEANIVSWNGILSGFNRSGYHKEAVVMFQ 241


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 204/577 (35%), Positives = 315/577 (54%), Gaps = 62/577 (10%)

Query: 32  ISVSSSLSYAQLLFNQIQNPQTQA--WNSLIRAFAQSLSPLQ---AIFYYNHMLMASLSR 86
           +S  + +SYA  +F+ I++ + ++  WN +IRA   ++SP Q    I  Y  M    +S 
Sbjct: 1   MSKEAIISYANPIFH-IRHLKLESFVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVS- 58

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR-------------- 132
           PD  TF F L +      L   Q  H  ++  G ++   V T+L+               
Sbjct: 59  PDFHTFPFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRI 118

Query: 133 -----------------GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
                             YA  G+I  AR +FD MPER+++SW+ +I+ Y     + EAL
Sbjct: 119 FDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEAL 178

Query: 176 KLYERMRFED-----VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
            L+  M+        V  + FT+  +LS+C  +GAL  G ++H    + G    + +G A
Sbjct: 179 DLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTA 238

Query: 231 LVDMYAKCGNLDSAFCVFSRM-RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FH 288
           L+DMYAKCG+L+ A  VF  +  K+DV ++++MI    ++G  DE    F +M  +   +
Sbjct: 239 LIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNIN 298

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           P+S+TF+G+L  C H+GL+ +G  YF MM   + + P I+HYGC+VDLYGR+G +++A  
Sbjct: 299 PNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAES 358

Query: 349 VINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
            I  S P +P  ++W +LL   ++  +++  E A+K L++L+  ++G YVLL+ +YA T 
Sbjct: 359 FI-ASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTG 417

Query: 407 DEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAK 466
               V R R  ++  GIK  PG S++E+   VH+FVV D+S  +++ IY  LEEIM R +
Sbjct: 418 RWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLR 477

Query: 467 FIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----- 521
             GY  D   V +     +   E + +YHSEKLAIAF L  T  GT +RI+KNLR     
Sbjct: 478 EAGYVSDTKEVLLDLEEKDK--EMALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDC 535

Query: 522 -------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                  S  +SR+++VRD  R+HHF DG CSC D+W
Sbjct: 536 HLVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRDFW 572



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 124/248 (50%), Gaps = 10/248 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           ++N+YA   +  +++A+ LF+++      +W+ LI  +       +A+  +  M +   +
Sbjct: 133 VVNAYA--KAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPN 190

Query: 86  R----PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
                P+ FT +  L AC R+ AL + + +H ++ + G E  +V+ T L+  YA  G +E
Sbjct: 191 EVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLE 250

Query: 142 AARSVFDNM-PERDLVSWNSIISCYTQASFHLEALKLYERMRF-EDVGLDGFTLVCLLSS 199
            A+ VFD +  ++D+ +++++I C        E  +++  M    ++  +  T V +L +
Sbjct: 251 RAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGA 310

Query: 200 CAHVGALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVL 257
           C H G +N G  +   +  E G   S+     +VD+Y + G +  A    + M  + DVL
Sbjct: 311 CVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVL 370

Query: 258 SWNSMIVG 265
            W S++ G
Sbjct: 371 IWGSLLSG 378


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 185/566 (32%), Positives = 306/566 (54%), Gaps = 57/566 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++YA+ +F+++ +     WN++I  + +     +A   +  M  +++  PD       + 
Sbjct: 162 INYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNV-MPDEMILCNIVS 220

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           AC R   +   + ++ F+I +                                  R + V
Sbjct: 221 ACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFV 280

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
           ST ++ GY+  G ++ A+ +FD   ++DLV W ++IS Y ++ +  EAL+++E M    +
Sbjct: 281 STAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGI 340

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  ++  ++S+CA++G L+   ++H      G    + + NAL++MYAKCG LD+   
Sbjct: 341 KPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRD 400

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF +M +R+V+SW+SMI    +HG   +A+S F +M      P+ +TF+G+L GCSH GL
Sbjct: 401 VFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGL 460

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLL 365
           VEEG + F  M   YN+ P ++HYGC+VDL+GRA  L +ALEVI +    S+ V+W +L+
Sbjct: 461 VEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLM 520

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
            +C+IH  +E+G+ A K +++LE    G  VL++ IYA  +  E V   R++++   +  
Sbjct: 521 SACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFK 580

Query: 426 TPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD--ESLVAVSGSS 483
             G S I+   + H+F++ DK H  ++ IY KL+E++ + K  GY  D    LV V    
Sbjct: 581 EKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEE 640

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTS------LRIVKNLR------------SIAY 525
            +D +     +HSEKLA+ FGL              +RIVKNLR            S  Y
Sbjct: 641 KKDLV----LWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVY 696

Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
            R++IVRDR R+H +++GLCSC DYW
Sbjct: 697 EREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 186/406 (45%), Gaps = 38/406 (9%)

Query: 40  YAQLLFNQIQNP-QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           YA  +F+ I +P ++  +N  +R  ++S  P   I +Y  +      R D F+F   LKA
Sbjct: 62  YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVG-GRLDQFSFLPILKA 120

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
             +V AL +  ELHG   +        V T  M  YA+ G I  AR+VFD M  RD+V+W
Sbjct: 121 VSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTW 180

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL--NMGIFLHRIA 216
           N++I  Y +     EA KL+E M+  +V  D   L  ++S+C   G +  N  I+   I 
Sbjct: 181 NTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIE 240

Query: 217 CEMGF-----------------------------VESVYVGNALVDMYAKCGNLDSAFCV 247
            ++                               V +++V  A+V  Y+KCG LD A  +
Sbjct: 241 NDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVI 300

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           F +  K+D++ W +MI  Y       EA+  F++M  +G  PD ++   ++  C++ G++
Sbjct: 301 FDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGIL 360

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
           ++  ++ H  +    L+  +     L+++Y + G L+   +V       + V W +++ +
Sbjct: 361 DKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINA 419

Query: 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEG 410
             +H       +++   ++ E     +   +  +Y C+     EEG
Sbjct: 420 LSMHGEAS-DALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEG 464


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 290/529 (54%), Gaps = 24/529 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A  LF  +      +W +++ A A +    +    +   +       +++TF+  L 
Sbjct: 123 LDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDGVAANSYTFSSVLG 182

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC     L     +H  +I+ G +  V V ++L+  Y   G +++ R VFD M   DLV 
Sbjct: 183 ACGTPGVL---AAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVV 239

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNSII+ + Q+   + A++L+ RM+      +  TL  +L +C  +  L +G  +H  A 
Sbjct: 240 WNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVH--AH 297

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            + +   + + NAL+DMY KCG L  A  +FSRM  RDV+SW++MI G   +GR  EA+ 
Sbjct: 298 VLKYDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALK 357

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F  M   G  P++IT +G+L  CSH GLVE+G  YF  M   + ++P  +H  C+VDL 
Sbjct: 358 VFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLL 417

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAGKL++A++ I       D V+WRTLLG+C++H+N  +   A   +++LE    G  +
Sbjct: 418 GRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKLEPEDQGARI 477

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+ IYA  +      ++ K ++  G+K  PG SWIE+G  VH F+  + SHP +D I +
Sbjct: 478 LLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIAGELSHPCSDRIVQ 537

Query: 457 KLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           +L  ++ RAK +GY      V   +     ED L+    YHSEKLAIAFG   + +G  +
Sbjct: 538 ELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLK----YHSEKLAIAFGTMNSMEGKPV 593

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI+KNLR            S    + +I+RD VR+HHF+ G+CSCGDYW
Sbjct: 594 RIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 184/523 (35%), Positives = 297/523 (56%), Gaps = 20/523 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F  +      A+NS+I  F   L            ++  + + D  ++   L  C   K
Sbjct: 165 VFENVSGFDIFAFNSMINGFLD-LGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTK 223

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L    ++H   ++   E+ V V + L+  Y        A S F+ +PE+++VSW ++++
Sbjct: 224 ELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMT 283

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            YTQ     +AL+L+  +  E V  + FT    L+SCA + AL  G  L   A + G   
Sbjct: 284 AYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWG 343

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           ++ V NAL++MY+K G++  A+ VF  M  RDV+SWNS+I+GY  HG   EA+  F  ML
Sbjct: 344 ALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDML 403

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
           +A   P  +TF+G+L  C+  GLV+EG+ Y ++M+    +KPG +HY C+V L  RAG+L
Sbjct: 404 LAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRL 463

Query: 344 EKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
           ++A + +++    +D V W++LL SC++++N  +G    + ++QL+    G YVLL+ +Y
Sbjct: 464 DEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVGTYVLLSNMY 523

Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
           A     +GV + RKL++  G++  PG SWI++G++VH F  +DK+H   + I  KL+E++
Sbjct: 524 AKANRWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNHKWINQITIKLKELI 583

Query: 463 HRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
            + K IGY  + ++V   V     E+ L     YHSEK+A+AFGL  +P+G ++RI+KNL
Sbjct: 584 GQIKVIGYVPNCAVVLHDVEAEQKEEHL----MYHSEKMALAFGLIHSPEGETIRIMKNL 639

Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R            S+   R ++VRD VR+H   DG+CSC DYW
Sbjct: 640 RICDDCHVAIKLISVVTRRKIVVRDTVRFHCIDDGVCSCDDYW 682



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 181/401 (45%), Gaps = 25/401 (6%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F+ + +    + N L+  +A +     A+     +L A+    + +  +  L 
Sbjct: 61  LGLARQMFDAMPSRNAVSGNLLMSGYASAGRHSDALA----LLKAADFSLNEYVLSTALS 116

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A   V++    ++ HG+ ++SG +    V   ++  Y     +E A  VF+N+   D+ +
Sbjct: 117 AAAHVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFA 176

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           +NS+I+ +        ++++   M  E    D  + V +L  CA    L +G  +H  A 
Sbjct: 177 FNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLLGCQVHAQAL 236

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +    ++VYVG+ALVDMY KC     A   F  + +++V+SW +++  Y  + R ++A+ 
Sbjct: 237 KRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQ 296

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG------ 331
            F  + + G  P+  T+   L  C+    ++ G       +S   +K G  H+G      
Sbjct: 297 LFLDLEIEGVRPNEFTYAVALNSCAGLAALKNG-----NALSASAMKTG--HWGALSVCN 349

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
            L+++Y ++G +  A  V  +    D V W +++     H           +++  E   
Sbjct: 350 ALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEIVP 409

Query: 392 AGDYV-LLATIYACTK---DEEGVARTRKLIKSNGIKTTPG 428
           +  YV  +  + AC +    +EG+     ++K  GIK  PG
Sbjct: 410 S--YVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIK--PG 446



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 123/257 (47%), Gaps = 5/257 (1%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           + +H  +IR+ +   V+   +L+  Y   G +  AR +FD MP R+ VS N ++S Y  A
Sbjct: 31  KAIHAQMIRAAHFD-VIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASA 89

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
             H +AL L   ++  D  L+ + L   LS+ AHV +  MG   H  A + G  E  YV 
Sbjct: 90  GRHSDALAL---LKAADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVC 146

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           NA++ MY +C +++ A  VF  +   D+ ++NSMI G+   G  D +I   + M+     
Sbjct: 147 NAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQ 206

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
            D ++++ +L  C+    +  G +  H    +  L+  +     LVD+YG+      A  
Sbjct: 207 WDHVSYVAVLGHCASTKELLLGCQ-VHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHS 265

Query: 349 VINTSSPSDPVLWRTLL 365
                   + V W  ++
Sbjct: 266 AFEVLPEKNVVSWTAVM 282


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 197/562 (35%), Positives = 301/562 (53%), Gaps = 64/562 (11%)

Query: 16  RQAHEIHGEWLLNSYAISV------------SSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           ++  +IHG  +  S   SV              +L  A+ LF+++ N    +WNS+I  +
Sbjct: 172 KRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGY 231

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
            Q+                   +P+T T  F    CE              +  SG    
Sbjct: 232 LQN------------------GQPETCTKLF----CE--------------MQSSGLMPD 255

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
            V  +N++  Y   G I+ A   F  + E+D V W +++    Q     +AL L+  M  
Sbjct: 256 QVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLL 315

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           E+V  D FT+  ++SSCA + +L  G  +H  A   G    + V +ALVDMY+KCG    
Sbjct: 316 ENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETAD 375

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A+ VF RM  R+V+SWNSMI+GY  +G+  EA++ +++ML     PD+ITF+G+L  C H
Sbjct: 376 AWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMH 435

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWR 362
            GLVE G  YF+ +   + + P   HY C+++L GRAG ++KA+++I + +   + ++W 
Sbjct: 436 AGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWS 495

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
           TLL  C+I+ +V  GE+A ++L +L+  +AG Y++L+ IYA     + VA  R L+K+N 
Sbjct: 496 TLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNK 555

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           IK    +SWIEI NQVHKFV +D++H + + IY +L  ++ + +  G+T D +LV     
Sbjct: 556 IKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVV 615

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDG-TSLRIVKNLR------------SIAYSRDL 529
             E F   S  YHSEKLA+AF L   P G T +RI+KN+R            S    R +
Sbjct: 616 EEEKF--DSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPI 673

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           I+RD  R+HHF +G CSC D W
Sbjct: 674 ILRDINRFHHFIEGRCSCKDSW 695



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 141/296 (47%), Gaps = 9/296 (3%)

Query: 52  QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111
            ++++  L+    +S   +QA     HM +      DTF     L    +   L+  ++L
Sbjct: 21  NSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDL 80

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
              + R    R V     ++  Y+ +G +E  R+VFD M   D VS+N++I+ ++     
Sbjct: 81  FDKMSR----RDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCS 136

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
            +AL+ + RM+ E      +T V +L +C+ +  +  G  +H         ESV+V NAL
Sbjct: 137 SQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNAL 196

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
            +MYAKCG LD A  +F RM  ++V+SWNSMI GY  +G+ +     F +M  +G  PD 
Sbjct: 197 TNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQ 256

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
           +T   +L      G ++E  + F  +  +  +       GC      + GK E AL
Sbjct: 257 VTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGC-----AQNGKEEDAL 307



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 149/335 (44%), Gaps = 37/335 (11%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A S S ++   + +F+Q+      ++N++I  F+ +    QA+ ++  M        D +
Sbjct: 98  AYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTD-Y 156

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T    L AC ++  + + +++HG ++ +     V V   L   YA  G ++ AR +FD M
Sbjct: 157 THVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRM 216

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
             +++VSWNS+IS Y Q        KL+  M+   +  D  T+  +LS+           
Sbjct: 217 VNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSA----------- 265

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
                                   Y +CG +D A   F  ++++D + W +M+VG   +G
Sbjct: 266 ------------------------YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNG 301

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
           + ++A+  F++ML+    PD+ T   ++  C+    + +G +  H     + +   +   
Sbjct: 302 KEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQG-QAVHGKAVIFGVDHDLLVS 360

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
             LVD+Y + G+   A  V       + + W +++
Sbjct: 361 SALVDMYSKCGETADAWIVFKRMLTRNVISWNSMI 395


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 180/534 (33%), Positives = 297/534 (55%), Gaps = 23/534 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPL------QAIFYYNHMLMASLSRPDTF 90
           +LS A  LF  + +P    +N++I    +  + +      +A+  Y+ +    +  P  F
Sbjct: 267 ALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGME-PTEF 325

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           TF+  ++AC     +   +++HG V++  ++    + + L+  Y  +  +E     F ++
Sbjct: 326 TFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSV 385

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           P++D+V+W ++IS   Q      AL L+  +    +  D FT+  ++++CA +  +  G 
Sbjct: 386 PKQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGE 445

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +   A + GF     +GN+ + MYA+ GN+++A   F  M   DV+SW+++I  +  HG
Sbjct: 446 QMQCFATKSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIISSHAQHG 505

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
              +A+ FF +M+ A   P+ ITFLG+L  CSH GLV+EG+ Y+ +M   Y L P +KH 
Sbjct: 506 CARQALQFFNEMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLCPTVKHC 565

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSD-PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
            C+VDL GRAG+L  A   I  S   D PV+W++LLGSC+IHR++E G++    +++L+ 
Sbjct: 566 TCVVDLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSCRIHRDMERGQLVADRIMELQP 625

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
           AS+G YV L  +Y    +    ++ R L+K  G+K  PG SWIE+ + +H FV  DKSHP
Sbjct: 626 ASSGCYVNLYNMYLDAGELSLGSKIRDLMKERGVKKEPGLSWIELRSGIHSFVAGDKSHP 685

Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
           + + IY KL E++ +   +  T    +  V  +  E   +     HSEKLA+A G+   P
Sbjct: 686 ECNAIYTKLAEMLSKIDKLTTTDTSCIEWVETTGRE---QNWMNCHSEKLAVALGIIHLP 742

Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               +R++KNLR            S +  R++I+RD +R+HHFRDG CSCGDYW
Sbjct: 743 QSAPIRVMKNLRVCRDCHSTMKLISKSECREIILRDVIRFHHFRDGSCSCGDYW 796



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 165/351 (47%), Gaps = 9/351 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL +Y    +     A+ L +++      ++N LI A++++    +++  + H   A+  
Sbjct: 51  LLAAYCRLGAGDTHQARRLLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAAEV 110

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           + D FT+   L AC R   L + + +H   +  G    V VS +L+  YA  G +  AR 
Sbjct: 111 KADRFTYAAALAACSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARR 170

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD   ERD VSWNS++S Y +   H E L+++  MR   +GL+ F L  ++  C+    
Sbjct: 171 VFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDG 230

Query: 206 LNMGI--FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
              GI   +H    + G    +++ +A+VDMYAK G L  A  +F  +   +V+ +N+MI
Sbjct: 231 SVRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMI 290

Query: 264 VGY-----GVHGR-GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
            G       VH     EA+S + ++   G  P   TF  ++  C+  G +E G +  H  
Sbjct: 291 AGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFG-KQIHGQ 349

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
           V ++  +        L+DLY  +  +E       +    D V W  ++  C
Sbjct: 350 VLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGC 400


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 206/598 (34%), Positives = 327/598 (54%), Gaps = 64/598 (10%)

Query: 12  LNKARQAH-------EIHGEWLLNSYAISVS-SSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           +N+ +Q H       +I    + N +  +V+ +SL+YA  LF+QI  P    +N++I++ 
Sbjct: 192 INQIKQTHANLITTAQITLPVIANKFLKNVALASLTYAHKLFDQIPQPDLFIYNTMIKS- 250

Query: 64  AQSLSP---LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
             S+SP   L +I  +  ++  S   P+ ++F F   AC     + + +++    ++ G 
Sbjct: 251 -HSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVGL 309

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDN------------------------------- 149
           +  V V   L+  +   G +E AR+VFD+                               
Sbjct: 310 DGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDE 369

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           M ERD+VSW++II+ Y Q    +EAL  + +M   +V  + +T+V  L++C+++ AL+ G
Sbjct: 370 MHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQG 429

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGV 268
            ++H          +  +  +L+DMYAKCG +DSA  VF   + KR V  WN+MI G+ +
Sbjct: 430 KWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAM 489

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           HG+ +EAI+ F++M +    P+ +TF+ LL  CSH  +V+EG  YF +M S Y + P I+
Sbjct: 490 HGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIE 549

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           HYGC+VDL  R+G L+ + E+I  S P  P   +W  LL +C+I++++E G    + + +
Sbjct: 550 HYGCMVDLLSRSGHLKDSEEMI-LSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKE 608

Query: 387 LEAASAGDYVLLATIYACTK--DEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVD 444
           ++    G  VLL  IY+ +   +E  + R +  I S+  K  PG+S IE+    H+F+V 
Sbjct: 609 IDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDR-KKIPGFSSIELNGVFHEFLVG 667

Query: 445 DKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           D+SHP +  IY  L+E++ + K  GY  +   V +     ED  E + + HSEKLAIAFG
Sbjct: 668 DRSHPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEED-KETALSVHSEKLAIAFG 726

Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           L  T  GT +RIVKNLR            S  Y R +IVRDR+RYHHF+DG+CSC DY
Sbjct: 727 LMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCKDY 784


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 302/565 (53%), Gaps = 36/565 (6%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVSSSLSYAQL------------LFNQIQNPQTQAWNSL 59
           L++   A E+HG  +   +AI V+   S  Q+            +F++++     +W ++
Sbjct: 311 LSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAM 370

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           I  + ++  P +A+  Y  M + ++S PD  T    L AC  +  L+   +LH      G
Sbjct: 371 ISGYEKNGFPDKALEVYALMELHNVS-PDDVTIASALAACACLGRLDVGIKLHELAQNKG 429

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS--CYTQASFHLEALKL 177
           + R VVV+  L+  YA +  I+ A  VF  M E+D+VSW+S+I+  C+   SF  EAL  
Sbjct: 430 FIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSF--EAL-Y 486

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
           Y R     V  +  T +  LS+CA  GAL  G  +H      G     YV NAL+D+Y K
Sbjct: 487 YFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVK 546

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
           CG    A+  FS   ++DV+SWN M+ G+  HG GD A+S F QM+  G HPD +TF+ L
Sbjct: 547 CGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVAL 606

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PS 356
           LC CS  G+V +G E FHMM  ++++ P +KHY C+VDL  R GKL +A  +IN      
Sbjct: 607 LCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKP 666

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
           D  +W  LL  C+IHR+VE+GE+A K +++LE      +VLL  +Y        VAR RK
Sbjct: 667 DAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRK 726

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
            ++  G++   G SW+E+    H F+ DD+SHP    I   L  I  R K  G+   ESL
Sbjct: 727 TMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYERMKACGFAPVESL 786

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN----------LRSIA-- 524
                 S +D L      HSE+LA+AFGL  T  GT++ + KN           ++I+  
Sbjct: 787 -EDKEVSEDDIL----CGHSERLAVAFGLINTTPGTTISVTKNRYTCQSCHVIFKAISEI 841

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGD 549
             R++ VRD  + H F+DG CSCGD
Sbjct: 842 VRREITVRDTKQLHCFKDGDCSCGD 866



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 190/372 (51%), Gaps = 16/372 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +      +WN++I    ++      +  +  ML   + +P+  T T    A  
Sbjct: 251 ARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEV-QPNLMTITSVTVASG 309

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +  +   +E+HGF ++ G+   V    +L++ Y + G +  A  +F  M  +D +SW +
Sbjct: 310 MLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTA 369

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y +  F  +AL++Y  M   +V  D  T+   L++CA +G L++GI LH +A   G
Sbjct: 370 MISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKG 429

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F+  V V NAL++MYAK  ++D A  VF  M ++DV+SW+SMI G+  + R  EA+ +F+
Sbjct: 430 FIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFR 489

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG----CLVDL 336
            ML     P+S+TF+  L  C+  G +  G E     +  Y L+ GI   G     L+DL
Sbjct: 490 YML-GHVKPNSVTFIAALSACAATGALRSGKE-----IHAYVLRCGIGSEGYVPNALLDL 543

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL-EAASAGDY 395
           Y + G+   A    +  S  D V W  +L     H    +G+IA+    Q+ E     D 
Sbjct: 544 YVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAH---GLGDIALSLFNQMVEMGEHPDE 600

Query: 396 V-LLATIYACTK 406
           V  +A + AC++
Sbjct: 601 VTFVALLCACSR 612



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 163/337 (48%), Gaps = 3/337 (0%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           +A  +F ++      +WN ++  + +     +A+  Y  ML A + RPD +TF   L+ C
Sbjct: 149 HAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGM-RPDVYTFPCVLRTC 207

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
             +      +E+H  V+R G+   V V   L+  YA  G I AAR VFD M   D +SWN
Sbjct: 208 GGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWN 267

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++I+ + +       L+L+  M   +V  +  T+  +  +   +  +     +H  A + 
Sbjct: 268 AMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKR 327

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           GF   V   N+L+ MY   G +  A  +FSRM  +D +SW +MI GY  +G  D+A+  +
Sbjct: 328 GFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVY 387

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
             M +    PD +T    L  C+  G ++ G++  H +         +     L+++Y +
Sbjct: 388 ALMELHNVSPDDVTIASALAACACLGRLDVGIK-LHELAQNKGFIRYVVVANALLEMYAK 446

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVE 375
           +  ++KA+EV    +  D V W +++ G C  HR+ E
Sbjct: 447 SKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFE 483



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 107/231 (46%), Gaps = 7/231 (3%)

Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
           G I  A  VF  MPERD+ SWN ++  Y +  F  EAL LY RM +  +  D +T  C+L
Sbjct: 145 GEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVL 204

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
            +C  +    MG  +H      GF + V V NALV MYAKCG++ +A  VF  M   D +
Sbjct: 205 RTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCI 264

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC---SHQGLVEEGVEYF 314
           SWN+MI G+  +   +  +  F  ML     P+ +T   +       S  G  +E     
Sbjct: 265 SWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKE----M 320

Query: 315 HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           H    +      +     L+ +Y   G++  A ++ +     D + W  ++
Sbjct: 321 HGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMI 371



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 1/140 (0%)

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           +GNA++ M  + G +  A+ VF++M +RDV SWN M+ GYG  G  +EA+  + +ML AG
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
             PD  TF  +L  C        G E  H  V R+     +     LV +Y + G +  A
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGRE-VHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251

Query: 347 LEVINTSSPSDPVLWRTLLG 366
            +V +  + +D + W  ++ 
Sbjct: 252 RKVFDGMAVTDCISWNAMIA 271


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 176/474 (37%), Positives = 281/474 (59%), Gaps = 36/474 (7%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           S + YA ++F Q++NP   ++N++IR +  +     AI  +N ML    + PD FTF F 
Sbjct: 53  SHVDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFV 112

Query: 96  LKACERVKALNKCQELHGFVIRSG--------------YERC-----------------V 124
           +K+C  +      Q++H  V + G              Y +C                  
Sbjct: 113 IKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDA 172

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           V   +L+ G+   G +++AR VFD MP R +VSW ++I+ Y +   + +AL ++  M+  
Sbjct: 173 VSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVV 232

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            +  D  +++ +L +CA +GAL +G ++H+ + + GF+++  V NALV+MYAKCG +D A
Sbjct: 233 GIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEA 292

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
           + +F++M ++DV+SW++MI G   HG+G  AI  F+ M  AG  P+ +TF+G+L  C+H 
Sbjct: 293 WGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHA 352

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRT 363
           GL  EG+ YF +M   Y+L+P I+HYGCLVDL GR+G++E+AL+ ++      D   W +
Sbjct: 353 GLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNS 412

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LL SC+IH N+EI  +AM+ L++LE   +G+YVLLA IYA     EGV+  RKLI+S  I
Sbjct: 413 LLSSCRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRI 472

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI-MHRAK---FIGYTKD 473
           K TPG S IE+ N V +FV  D S P +  ++  L+ + +H+ +   FI + +D
Sbjct: 473 KKTPGCSLIEVNNLVQEFVSGDDSKPFSQEVFWILKGLTLHQIRTKDFIEFVED 526



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 116/264 (43%), Gaps = 25/264 (9%)

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
            V  L +C  +  L     +H    ++   +S ++   ++D+     ++D A  +F ++ 
Sbjct: 10  FVTTLRNCPKIAELKK---IHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLE 66

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA-GFHPDSITFLGLLCGCSHQGLVEEGV 311
             +V S+N++I  Y  + +   AI+ F QML      PD  TF  ++  C+  GL+   +
Sbjct: 67  NPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCA--GLLCRRL 124

Query: 312 -EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI 370
            +  H  V ++  K        L+D+Y + G +  A +V    +  D V W +L+     
Sbjct: 125 GQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISG--- 181

Query: 371 HRNVEIGEI--AMKNLVQLEAASAGDYVLLATIYA---CTKDEEGVARTRKLI-----KS 420
             +V +G++  A +   ++   +   +  +   YA   C  D  G+ R  +++     + 
Sbjct: 182 --HVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEI 239

Query: 421 NGIKTTPGWSW---IEIGNQVHKF 441
           + I   P  +    +E+G  +HK+
Sbjct: 240 SVISVLPACAQLGALEVGKWIHKY 263


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 180/442 (40%), Positives = 266/442 (60%), Gaps = 21/442 (4%)

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           V  T+++ G+   G +E+AR VF+ MPERDLVSWN++IS        +EAL L+  M  E
Sbjct: 109 VTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEE 168

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
               +  T+V +LS+C   GAL  G ++H    +       ++G ALVDMYAKCG ++ A
Sbjct: 169 GFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELA 228

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDSITFLGLLCGCSH 303
             VF+ +R R+  +WN+MI G  ++G   +A+  F+QM + G   PD +TF+G+L  CSH
Sbjct: 229 LEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSH 288

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
            G V+ G E+F+ +  +Y ++  ++HY C+VDL  R+G L++A ++I T  P  P  V+W
Sbjct: 289 AGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLI-TEMPMKPDVVVW 347

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
           R LLG C++H+NV++ E  +    ++EA  +GD+VLL+ +YA      GV   R+ ++S 
Sbjct: 348 RALLGGCRLHKNVKMAENVIS---EMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSK 404

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
           GI+  PG S +E+   +H+F+  DKSHP  D I+ KL EI  R +  GY  + + V    
Sbjct: 405 GIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEVFYDI 464

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
              E   E++  YHSEKLAIAFGL   P   ++RIVKNLR            S  Y R++
Sbjct: 465 EDEEK--EQALGYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCHSFAKLVSKIYHREI 522

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           +VRDR R+HHFR G CSC D+W
Sbjct: 523 VVRDRARFHHFRGGACSCNDFW 544



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 128/296 (43%), Gaps = 42/296 (14%)

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
           LH    + G+  C   +   ++GY + G +  AR VFD MP RD VS+NS+I  Y  +  
Sbjct: 33  LHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGD 92

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
              A +L+ER+                                          +     +
Sbjct: 93  VGSAQRLFERV---------------------------------------LAPTPVTWTS 113

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           +V  + + G+++SA  VF  M +RD++SWN+MI G   +    EA+  F+ M+  GF P+
Sbjct: 114 MVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPN 173

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
             T + +L  C+  G +E G ++ H+ V +  L+        LVD+Y + G +E ALEV 
Sbjct: 174 RGTVVSVLSACTGAGALETG-KWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVF 232

Query: 351 NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV-LLATIYACT 405
                 +   W  ++    ++       + M   ++L    A D V  +  + AC+
Sbjct: 233 TGLRARNTCTWNAMINGLAMN-GYSAKALDMFRQMELNGTVAPDEVTFVGVLLACS 287



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 110/238 (46%), Gaps = 4/238 (1%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           +  +  A+ +F ++      +WN++I     +  P++A+  +  M+      P+  T   
Sbjct: 121 AGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFV-PNRGTVVS 179

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L AC    AL   + +H FV +        + T L+  YA  G +E A  VF  +  R+
Sbjct: 180 VLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARN 239

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGI-FL 212
             +WN++I+      +  +AL ++ +M     V  D  T V +L +C+H G ++ G    
Sbjct: 240 TCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHF 299

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVH 269
           + I  + G    +     +VD+ A+ G+L  A  + + M  K DV+ W +++ G  +H
Sbjct: 300 YTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLH 357


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 205/571 (35%), Positives = 315/571 (55%), Gaps = 60/571 (10%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA-SLSRPDTFTF 92
           VS  L YA  +F++IQ+P +  + +LI+ F+ + +P++++  Y  ML   + S    F+ 
Sbjct: 53  VSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSI 112

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              LKAC ++ A ++ +++HG V+++       V  +++R Y   G IE AR VFD MP 
Sbjct: 113 PSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPN 172

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDV-------------------------- 186
           RD+VSWNS+I+ Y +A     A K++E M  +DV                          
Sbjct: 173 RDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREM 232

Query: 187 ---GL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE--SVYVGNALVDMYAKCG 239
              GL  DG  +V +LS+ A +G +  G +LH     M  +E  S ++G+AL+DMY+KCG
Sbjct: 233 LSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYV-SMNKIELSSGFIGSALIDMYSKCG 291

Query: 240 NLDSAFCVFSRM-RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
            +++A+ VF  +  +R++  WNSMI G  +HG   EA+  F +M      P+ ITFLGLL
Sbjct: 292 YIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLL 351

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSD 357
             CSH GLVEEG  YF  M  +Y + P I+HYGC++DL+GRAG+LE AL VI N    +D
Sbjct: 352 STCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEAD 411

Query: 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
            + W+ +L +   H ++EIG+ A    ++L    +  YVLL+ IYA     + VA+ R +
Sbjct: 412 LLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLM 471

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVD---DKSHPDADMIYRKLEEIMHRAKFIGYTKD- 473
           ++  G+K   G S + +  +VH+F++    D S+  +  +  K+ E++ R K  GY  D 
Sbjct: 472 MRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSY--SGQVLAKIAEVVSRLKLQGYEPDL 529

Query: 474 -ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
            + L+ +     E  L      HSEK+AIAFGL        + IVKNLR           
Sbjct: 530 TQVLLDIEDEGKESLLN----LHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKL 585

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            S  Y+R +I+RD+ R+HHF +G CSC +YW
Sbjct: 586 VSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 172/490 (35%), Positives = 271/490 (55%), Gaps = 4/490 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +   ++     +W S+I  + Q      A+  +  M    +  PD       + 
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW-PDNIGLASAIS 454

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C  + A+ +  ++H  +  SGY   V +   L+  YA  G I  A S F+ +  +D ++
Sbjct: 455 GCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEIT 514

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN ++S + Q+  H EALK++ RM    V  + FT V  LS+ A++  +  G  +H    
Sbjct: 515 WNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI 574

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G      VGNAL+ +Y KCG+ + A   FS M +R+ +SWN++I     HGRG EA+ 
Sbjct: 575 KTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALD 634

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM   G  P+ +TF+G+L  CSH GLVEEG+ YF  M   Y ++P   HY C++D++
Sbjct: 635 LFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIF 694

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAG+L++A + I      +D ++WRTLL +CK+H+N+E+GE A K+L++LE   +  YV
Sbjct: 695 GRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYV 754

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+  YA T+      + RK+++  G++  PG SWIE+ N VH F V D+ HP A+ IY 
Sbjct: 755 LLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYN 814

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            L  I  R   +GY +++    +     ++  + +   HSEKLA+ FGL + P    LR+
Sbjct: 815 FLAVINDRVAKVGYKQEK--YHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRV 872

Query: 517 VKNLRSIAYS 526
           +KNLR   Y+
Sbjct: 873 IKNLRVEKYT 882



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 222/468 (47%), Gaps = 19/468 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A ++FN         WN ++ AF Q ++ L   F     + A+  RP+ FT+   L+ C 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQ-INDLAKSFELFCQMQAAGIRPNQFTYPCILRTCT 356

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             + ++  +++H   +++G+E  + VS  L+  Y+  G +E AR V + + E+D+VSW S
Sbjct: 357 CTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTS 416

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+ Y Q     +AL  ++ M+   +  D   L   +S CA + A+  G+ +H      G
Sbjct: 417 MIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSG 476

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +   V + NALV++YA+CG +  AF  F  +  +D ++WN ++ G+   G  +EA+  F 
Sbjct: 477 YSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFM 536

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M  +G   +  TF+  L   ++   +++G +  H  V +       +    L+ LYG+ 
Sbjct: 537 RMDQSGVKHNVFTFVSALSASANLAEIKQGKQ-IHARVIKTGHSFETEVGNALISLYGKC 595

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G  E A    +  S  + V W T++ SC  H R +E   + + + ++ E     D   + 
Sbjct: 596 GSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEA--LDLFDQMKKEGIKPNDVTFIG 653

Query: 400 TIYACTK---DEEGVARTRKLIKSNGIKTTPGWSWIEIG--------NQVHKFVVDDKSH 448
            + AC+     EEG++  + +    GI+  P      I         ++  KF+ +    
Sbjct: 654 VLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIA 713

Query: 449 PDADMIYRKLEEI--MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY 494
            DA M++R L     +H+   +G    + L+ +    S  ++  S+AY
Sbjct: 714 ADA-MVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAY 760



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 200/425 (47%), Gaps = 8/425 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S   A+ +F  + +  T  +N+LI   AQ      A+  +  M  + LS PD  T +  L
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS-PDCVTISSLL 251

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  +  L K  +LH ++ ++G     ++  +L+  Y   G +E A  +F++    ++V
Sbjct: 252 AACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVV 311

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            WN ++  + Q +   ++ +L+ +M+   +  + FT  C+L +C     +++G  +H ++
Sbjct: 312 LWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLS 371

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF   +YV   L+DMY+K G L+ A  V   ++++DV+SW SMI GY  H    +A+
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDAL 431

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKPGIKHYGCLVD 335
           + FK+M   G  PD+I     + GC+    + +G++ +  + VS Y+    I  +  LV+
Sbjct: 432 AAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSI--WNALVN 489

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           LY R G++ +A          D + W  L+          + E A+K  ++++ +     
Sbjct: 490 LYARCGRIREAFSSFEEIEHKDEITWNGLVSG---FAQSGLHEEALKVFMRMDQSGVKHN 546

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V                +  K I +  IKT   +   E+GN +        S  DA M +
Sbjct: 547 VFTFVSALSASANLAEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSFEDAKMEF 605

Query: 456 RKLEE 460
            ++ E
Sbjct: 606 SEMSE 610



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 2/275 (0%)

Query: 92  FTFTLKACE-RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           F   L+AC    +      E+H   +  G  +  +V   L+  Y+ NG++  AR VF+ +
Sbjct: 44  FACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL 103

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
             RD VSW +++S Y Q     EAL LY +M    V    + L  +LSSC        G 
Sbjct: 104 SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H    + GF   ++VGNA++ +Y +CG+   A  VF  M  RD +++N++I G+   G
Sbjct: 164 LIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCG 223

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
            G+ A+  F++M  +G  PD +T   LL  C+  G +++G +  H  + +  +       
Sbjct: 224 HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQ-LHSYLFKAGISSDYIME 282

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           G L+DLY + G +E AL + N+S  ++ VLW  +L
Sbjct: 283 GSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLML 317



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 178/363 (49%), Gaps = 10/363 (2%)

Query: 6   HARYV--GLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           HA+ V  GL K R    I G  L++ Y  S +  +  A+ +F ++      +W +++  +
Sbjct: 65  HAKAVTRGLGKYR----IVGNLLIDLY--SKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           AQ+    +A+  Y  M  A +  P  +  +  L +C + +   + + +H    + G+   
Sbjct: 119 AQNGLGEEALGLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           + V   ++  Y   G    A  VF +MP RD V++N++IS + Q      AL+++E M+F
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
             +  D  T+  LL++CA +G L  G  LH    + G      +  +L+D+Y KCG++++
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F+   + +V+ WN M+V +G      ++   F QM  AG  P+  T+  +L  C+ 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
              ++ G E  H +  +   +  +   G L+D+Y + G LEKA  V+      D V W +
Sbjct: 358 TREIDLG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTS 416

Query: 364 LLG 366
           ++ 
Sbjct: 417 MIA 419



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 130/273 (47%), Gaps = 15/273 (5%)

Query: 11  GLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLL------------FNQIQNPQTQAWNS 58
           G+N  RQ  +IH    ++ Y+  VS   +   L             F +I++     WN 
Sbjct: 458 GINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNG 517

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           L+  FAQS    +A+  +  M  + + + + FTF   L A   +  + + +++H  VI++
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGV-KHNVFTFVSALSASANLAEIKQGKQIHARVIKT 576

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G+     V   L+  Y   G  E A+  F  M ER+ VSWN+II+  +Q    LEAL L+
Sbjct: 577 GHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLF 636

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAK 237
           ++M+ E +  +  T + +L++C+HVG +  G+ +   ++ E G          ++D++ +
Sbjct: 637 DQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGR 696

Query: 238 CGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVH 269
            G LD A      M    D + W +++    VH
Sbjct: 697 AGQLDRAKKFIEEMPIAADAMVWRTLLSACKVH 729


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 172/490 (35%), Positives = 271/490 (55%), Gaps = 4/490 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +   ++     +W S+I  + Q      A+  +  M    +  PD       + 
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW-PDNIGLASAIS 454

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C  + A+ +  ++H  +  SGY   V +   L+  YA  G I  A S F+ +  +D ++
Sbjct: 455 GCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEIT 514

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN ++S + Q+  H EALK++ RM    V  + FT V  LS+ A++  +  G  +H    
Sbjct: 515 WNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI 574

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G      VGNAL+ +Y KCG+ + A   FS M +R+ +SWN++I     HGRG EA+ 
Sbjct: 575 KTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALD 634

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM   G  P+ +TF+G+L  CSH GLVEEG+ YF  M   Y ++P   HY C++D++
Sbjct: 635 LFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIF 694

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAG+L++A + I      +D ++WRTLL +CK+H+N+E+GE A K+L++LE   +  YV
Sbjct: 695 GRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYV 754

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+  YA T+      + RK+++  G++  PG SWIE+ N VH F V D+ HP A+ IY 
Sbjct: 755 LLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYN 814

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            L  I  R   +GY +++    +     ++  + +   HSEKLA+ FGL + P    LR+
Sbjct: 815 FLAVINDRVAKVGYKQEK--YHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRV 872

Query: 517 VKNLRSIAYS 526
           +KNLR   Y+
Sbjct: 873 IKNLRVEKYT 882



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 192/391 (49%), Gaps = 8/391 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A ++FN         WN ++ AF Q ++ L   F     + A+  RP+ FT+   L+ C 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQ-INDLAKSFELFCQMQAAGIRPNQFTYPCILRTCT 356

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
             + ++  +++H   +++G+E  + VS  L+  Y+  G +E AR V + + E+D+VSW S
Sbjct: 357 CTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTS 416

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+ Y Q     +AL  ++ M+   +  D   L   +S CA + A+  G+ +H      G
Sbjct: 417 MIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSG 476

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           +   V + NALV++YA+CG +  AF  F  +  +D ++WN ++ G+   G  +EA+  F 
Sbjct: 477 YSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFM 536

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M  +G   +  TF+  L   ++   +++G +  H  V +       +    L+ LYG+ 
Sbjct: 537 RMDQSGVKHNVFTFVSALSASANLAEIKQGKQ-IHARVIKTGHSFETEVGNALISLYGKC 595

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G  E A    +  S  + V W T++ SC  H R +E   + + + ++ E     D   + 
Sbjct: 596 GSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEA--LDLFDQMKKEGIKPNDVTFIG 653

Query: 400 TIYACTK---DEEGVARTRKLIKSNGIKTTP 427
            + AC+     EEG++  + +    GI+  P
Sbjct: 654 VLAACSHVGLVEEGLSYFKSMSDEYGIRPRP 684



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 200/425 (47%), Gaps = 8/425 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S   A+ +F  + +  T  +N+LI   AQ      A+  +  M  + LS PD  T +  L
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS-PDCVTISSLL 251

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  +  L K  +LH ++ ++G     ++  +L+  Y   G +E A  +F++    ++V
Sbjct: 252 AACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVV 311

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            WN ++  + Q +   ++ +L+ +M+   +  + FT  C+L +C     +++G  +H ++
Sbjct: 312 LWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLS 371

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF   +YV   L+DMY+K G L+ A  V   ++++DV+SW SMI GY  H    +A+
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDAL 431

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKPGIKHYGCLVD 335
           + FK+M   G  PD+I     + GC+    + +G++ +  + VS Y+    I  +  LV+
Sbjct: 432 AAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSI--WNALVN 489

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           LY R G++ +A          D + W  L+          + E A+K  ++++ +     
Sbjct: 490 LYARCGRIREAFSSFEEIEHKDEITWNGLVSG---FAQSGLHEEALKVFMRMDQSGVKHN 546

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V                +  K I +  IKT   +   E+GN +        S  DA M +
Sbjct: 547 VFTFVSALSASANLAEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSFEDAKMEF 605

Query: 456 RKLEE 460
            ++ E
Sbjct: 606 SEMSE 610



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 2/275 (0%)

Query: 92  FTFTLKACE-RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           F   L+AC    +      E+H   +  G  +  +V   L+  Y+ NG++  AR VF+ +
Sbjct: 44  FACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL 103

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
             RD VSW +++S Y Q     EAL LY +M    V    + L  +LSSC        G 
Sbjct: 104 SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H    + GF   ++VGNA++ +Y +CG+   A  VF  M  RD +++N++I G+   G
Sbjct: 164 LIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCG 223

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
            G+ A+  F++M  +G  PD +T   LL  C+  G +++G +  H  + +  +       
Sbjct: 224 HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQ-LHSYLFKAGISSDYIME 282

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           G L+DLY + G +E AL + N+S  ++ VLW  +L
Sbjct: 283 GSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLML 317



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 178/363 (49%), Gaps = 10/363 (2%)

Query: 6   HARYV--GLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           HA+ V  GL K R    I G  L++ Y  S +  +  A+ +F ++      +W +++  +
Sbjct: 65  HAKAVTRGLGKYR----IVGNLLIDLY--SKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           AQ+    +A+  Y  M  A +  P  +  +  L +C + +   + + +H    + G+   
Sbjct: 119 AQNGLGEEALGLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           + V   ++  Y   G    A  VF +MP RD V++N++IS + Q      AL+++E M+F
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
             +  D  T+  LL++CA +G L  G  LH    + G      +  +L+D+Y KCG++++
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F+   + +V+ WN M+V +G      ++   F QM  AG  P+  T+  +L  C+ 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
              ++ G E  H +  +   +  +   G L+D+Y + G LEKA  V+      D V W +
Sbjct: 358 TREIDLG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTS 416

Query: 364 LLG 366
           ++ 
Sbjct: 417 MIA 419



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 130/273 (47%), Gaps = 15/273 (5%)

Query: 11  GLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLL------------FNQIQNPQTQAWNS 58
           G+N  RQ  +IH    ++ Y+  VS   +   L             F +I++     WN 
Sbjct: 458 GINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNG 517

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           L+  FAQS    +A+  +  M  + + + + FTF   L A   +  + + +++H  VI++
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGV-KHNVFTFVSALSASANLAEIKQGKQIHARVIKT 576

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G+     V   L+  Y   G  E A+  F  M ER+ VSWN+II+  +Q    LEAL L+
Sbjct: 577 GHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLF 636

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAK 237
           ++M+ E +  +  T + +L++C+HVG +  G+ +   ++ E G          ++D++ +
Sbjct: 637 DQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGR 696

Query: 238 CGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVH 269
            G LD A      M    D + W +++    VH
Sbjct: 697 AGQLDRAKKFIEEMPIAADAMVWRTLLSACKVH 729


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 186/529 (35%), Positives = 284/529 (53%), Gaps = 20/529 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+L+F+ +       W  L+  + Q+     A+  +  M M  +   D F F+  LK
Sbjct: 239 LEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGV-ELDEFVFSIVLK 297

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C  ++  +  +++H  +++ G E  V V T L+  Y   G IE+A   F  + E + VS
Sbjct: 298 VCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVS 357

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W+++IS ++Q+    + +K++  +R E V L+ F    +  +CA    LNMG   H  A 
Sbjct: 358 WSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAI 417

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G V  +Y  +A+V MY+KCG LD A   F  + + D ++W ++I GY  HG   EA+ 
Sbjct: 418 KRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALG 477

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
           FF++M   G  P+++TF+ +L  CSH GLV E  +Y   M   Y +KP I HY C++D Y
Sbjct: 478 FFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTY 537

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            RAG L++ALE+IN      D + W++LLG C  H ++++G+IA +NL +L+      Y+
Sbjct: 538 SRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYI 597

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL  +Y+     E     RKL+    +K     SWI +  QVH+FVV D+ HP  + IY 
Sbjct: 598 LLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAIYS 657

Query: 457 KLEEIMHRA--KFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           KLEE         +    +E  V+ S S+ ++ L      HSEKLAIAFGL +T D   +
Sbjct: 658 KLEEFKCSVIDSPVRLLNEEDDVSCSLSARKEQLLD----HSEKLAIAFGLISTEDNAPI 713

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            + KNLR            S+   R ++VRD  R+HHF+ G CSC DYW
Sbjct: 714 LVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDYW 762



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 160/332 (48%), Gaps = 2/332 (0%)

Query: 42  QLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101
           Q +F+++      +W  +I A+A++    +AI  ++ M  AS  RP++  +   L++C  
Sbjct: 142 QKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDM-QASGIRPNSAVYMSLLQSCLG 200

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161
              L   +++H  VIR+     + V T +   Y   G +E A+ VFD M  ++ V+W  +
Sbjct: 201 PSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGL 260

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           +  YTQA     AL+L+ RM  E V LD F    +L  C  +   +MG  +H    ++G 
Sbjct: 261 MVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGA 320

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
              V VG  LVD Y KCG+++SA+  F R+ + + +SW+++I G+   GR ++ I  F  
Sbjct: 321 ESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTS 380

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           +   G   +S  +  +   C+ Q  +  G +     + R  L   +     +V +Y + G
Sbjct: 381 LRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKR-GLVSYLYGESAMVTMYSKCG 439

Query: 342 KLEKALEVINTSSPSDPVLWRTLLGSCKIHRN 373
           +L+ A     +    D V W  ++     H N
Sbjct: 440 RLDYARRAFESIDEPDAVAWTAIISGYAYHGN 471



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 124/282 (43%), Gaps = 9/282 (3%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
           P ++   F  +AC ++++L   + +H  + R+       +   L+R Y   G     + V
Sbjct: 87  PHSYQCLF--EACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKV 144

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           FD M  ++LVSW  +IS Y +     +A++L+  M+   +  +    + LL SC     L
Sbjct: 145 FDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFL 204

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            +G  +H          ++ V  A+ +MY +CG L+ A  VF  M  ++ ++W  ++VGY
Sbjct: 205 ELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGY 264

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITF---LGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
               + + A+  F +M M G   D   F   L + CG     +  +     H  + +   
Sbjct: 265 TQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQ----IHSHIVKLGA 320

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +  +     LVD Y + G +E A       S  + V W  L+
Sbjct: 321 ESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALI 362


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 184/531 (34%), Positives = 286/531 (53%), Gaps = 18/531 (3%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           +  L  A+ LF+++       WN+++          +++ ++  M    +  PD F    
Sbjct: 120 NGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGM-HPDEFGLGS 178

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
             + C  ++ +   +++H +V+RSG +R + V ++L   Y   G ++   +V   +P   
Sbjct: 179 VFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLS 238

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +VS N+II+  TQ      AL+ +  MR   V  D  T V  +SSC+ + AL  G  +H 
Sbjct: 239 IVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHG 298

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              + G  + V V   LV MY++CG L  +  VF      D    ++MI  YG HG G +
Sbjct: 299 QVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQK 358

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           AI  FKQM+  G  P  +TFL LL  CSH GL EEG++ F +M   Y ++P +KHY C+V
Sbjct: 359 AIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVV 418

Query: 335 DLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           DL GR+G L++A E +  S P  P  V+W+TLL +CK  +N ++ E   K +++L+   +
Sbjct: 419 DLLGRSGCLDEA-EALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDS 477

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
             YVLL+ I A ++    V+  RK ++ N ++  PG SW+E+   +H+F   D+SHP   
Sbjct: 478 ASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQK 537

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            I   LEE+M + +  GY+ D S+V       E   E S ++HSEKLAIAF   + P+G 
Sbjct: 538 EIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEK--EVSLSHHSEKLAIAFAFLSLPEGV 595

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +R++KNLR            S    R+++VRD  R+HHF+DG CSC DYW
Sbjct: 596 PIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 169/382 (44%), Gaps = 22/382 (5%)

Query: 56  WNSLIRAFA------QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ 109
           W+   R F+      ++L PL+ +  +      S +  D FT    + A   +  L   +
Sbjct: 40  WSDAARLFSHLFRACRALRPLRQLHAFA---ATSGAATDRFTANHLMLAYADLGDLTAAR 96

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           EL   + R    R V+    L  GY  NG +  AR +FD MPER++ +WN++++  T   
Sbjct: 97  ELFERIPR----RNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLG 152

Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
           F  E+L  +  MR E +  D F L  +   CA +  +  G  +H      G    + VG+
Sbjct: 153 FDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGS 212

Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
           +L  MY +CG L     V   +    ++S N++I G   +G  + A+ +F  M   G   
Sbjct: 213 SLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAA 272

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           D +TF+  +  CS    + +G +  H  V +  +   +    CLV +Y R G L  +  V
Sbjct: 273 DVVTFVSAISSCSDLAALAQG-QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERV 331

Query: 350 INTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLATIYACTKD 407
                 SD  L   ++ +   H +   G+ A++   Q+    A   D   LA +YAC+  
Sbjct: 332 FFGYCGSDTFLLSAMISAYGFHGH---GQKAIELFKQMMNGGAEPSDVTFLALLYACSHS 388

Query: 408 ---EEGVARTRKLIKSNGIKTT 426
              EEG+     + K+ G++ +
Sbjct: 389 GLKEEGMDCFELMTKTYGMQPS 410


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 184/531 (34%), Positives = 287/531 (54%), Gaps = 24/531 (4%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L   + +F+++      +WN+L+   A+S    +A+     M      +PD+FT +  L 
Sbjct: 123 LESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDG-CKPDSFTLSSVLP 181

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
                  + +  ELHGF  R+G+   V V ++L+  YA     + +  VFDN+P RD + 
Sbjct: 182 IFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAIL 241

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNS+++   Q     EAL L+ RM    +     T   L+ +C ++ +L +G  LH    
Sbjct: 242 WNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVI 301

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
             GF  +V++ ++L+DMY KCGN+  A  +F R++  D++SW +MI+G+ +HG   EA+ 
Sbjct: 302 RGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALV 361

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M +    P+ ITFL +L  CSH GLV++G +YF+ M   Y + P ++H+  L D  
Sbjct: 362 LFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTL 421

Query: 338 GRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GR GKLE+A   I+     P+  V W TLL +CK+H+N  + E   K +  LE  S G +
Sbjct: 422 GRPGKLEEAYNFISGMKIKPTASV-WSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSH 480

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           ++L+  Y+ +      A  RK ++  G++  P  SWIE+ N+ H FV  DKSHP  + I 
Sbjct: 481 IILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERII 540

Query: 456 RKLE---EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
             L    E M R  ++  T D     V     E+        HSEKLAI FG+ +TP GT
Sbjct: 541 DALNVFSEQMVRQGYVPNTDD-----VFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGT 595

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++R++KNLR            S    R++++RD  R+HHF+DG+CSCGD+W
Sbjct: 596 TIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 131/267 (49%), Gaps = 2/267 (0%)

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
           V+E+ R VFD MPE+D+VSWN+++    ++  H EAL L   M  +    D FTL  +L 
Sbjct: 122 VLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLP 181

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
             A    +  G+ LH  A   GF + V+VG++L+DMYA C   D +  VF  +  RD + 
Sbjct: 182 IFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAIL 241

Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
           WNSM+ G   +G  DEA+  F++ML +G  P  +TF  L+  C +   +  G +  H  V
Sbjct: 242 WNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLG-KQLHAYV 300

Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
            R      +     L+D+Y + G +  A  + +     D V W  ++    +H       
Sbjct: 301 IRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAR-EA 359

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACT 405
           + + + ++L          LA + AC+
Sbjct: 360 LVLFDRMELGNLKPNHITFLAVLTACS 386



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 21/238 (8%)

Query: 157 SW-NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC----LLSSCAHVGALNMGIF 211
           SW + I    +Q  FH  A+ L+ RMR  D      +++      L SCA +G   +G  
Sbjct: 21  SWAHQIRVAASQGDFH-HAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGAS 79

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGN--------------LDSAFCVFSRMRKRDVL 257
           LH +A   G     +  NAL+++Y K                 L+S   VF  M ++DV+
Sbjct: 80  LHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVV 139

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           SWN++++G    GR  EA+   ++M   G  PDS T   +L   +    V  G+E  H  
Sbjct: 140 SWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGME-LHGF 198

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
            +R      +     L+D+Y    + + +++V +     D +LW ++L  C  + +V+
Sbjct: 199 ATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVD 256


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 188/529 (35%), Positives = 290/529 (54%), Gaps = 27/529 (5%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A++LF+++      +W ++I  + Q+     A       L   +   +  ++T  LK
Sbjct: 269 LVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIA-----RKLFEVMPEKNEVSWTAMLK 323

Query: 98  ACERVKALNKCQEL-HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
                  L++  EL +   I+S     VV    ++  +  NG +  AR VFD M E+D  
Sbjct: 324 GYTNCGRLDEASELFNAMPIKS-----VVACNAMILCFGQNGEVPKARQVFDQMREKDEG 378

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           +W+++I  Y +    L+AL+L+  M+ E +  +  +L+ +LS CA +  L+ G  +H   
Sbjct: 379 TWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQL 438

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
               F   VYV + L+ MY KCGNL  A  VF R   +DV+ WNS+I GY  HG G EA+
Sbjct: 439 VRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEAL 498

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F  M  +G  PD +TF+G+L  CS+ G V++G+E F+ M ++Y ++  I+HY C+VDL
Sbjct: 499 RVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDL 558

Query: 337 YGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GRAGKL +A+++I      +D ++W  LLG+C+ H  +++ E+A K L+ LE  +AG +
Sbjct: 559 LGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPF 618

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKS-HPDADMI 454
           +LL+ IYA     + VA  R+ ++   +   PG SWI +  +VHKF   D S HP+   I
Sbjct: 619 ILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEI 678

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
            R LE +    +  GY  D+S V       E    +S  YHSEKLA+A+GL   P G  +
Sbjct: 679 NRILEWLSGLLREAGYYPDQSFVLHDVDEEEKV--QSLEYHSEKLAVAYGLLKIPIGMPI 736

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++KNLR            +    R++I+RD  R+HHF+DG CSC DYW
Sbjct: 737 RVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 157/369 (42%), Gaps = 58/369 (15%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
            +  A+++F+++++    +WNS++  + Q+  P +A   ++ M                 
Sbjct: 113 QIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----------------- 155

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
                                   ER  +    L+ GY  NG+I  AR VFD MPER++V
Sbjct: 156 -----------------------SERNTISWNGLVSGYINNGMINEAREVFDRMPERNVV 192

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW +++  Y +     EA  L+ +M  ++V     +   +L      G ++    L  + 
Sbjct: 193 SWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVMLGGLLQEGRIDEACRLFDMM 248

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            E    + V     ++  Y + G L  A  +F  M +R+V+SW +MI GY  + + D A 
Sbjct: 249 PE----KDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIAR 304

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F+ M       + +++  +L G ++ G ++E  E F+ M  +      +     ++  
Sbjct: 305 KLFEVMP----EKNEVSWTAMLKGYTNCGRLDEASELFNAMPIK-----SVVACNAMILC 355

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           +G+ G++ KA +V +     D   W  ++   +  + +E+  + +  ++Q E        
Sbjct: 356 FGQNGEVPKARQVFDQMREKDEGTWSAMIKVYE-RKGLELDALELFRMMQREGIRPNFPS 414

Query: 397 LLATIYACT 405
           L++ +  C 
Sbjct: 415 LISVLSVCA 423



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 110/259 (42%), Gaps = 58/259 (22%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           ++   +L+  Y+  G IE AR VFD M +++++SWNSI++ Y Q     EA  ++++M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS- 156

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
                                                   +    N LV  Y   G ++ 
Sbjct: 157 --------------------------------------ERNTISWNGLVSGYINNGMINE 178

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  VF RM +R+V+SW +M+ GY   G   EA + F QM       + +++  +L G   
Sbjct: 179 AREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMP----EKNVVSWTVMLGGLLQ 234

Query: 304 QGLVEEGVEYFHMM-----VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
           +G ++E    F MM     V+R N+  G          Y + G+L +A  + +     + 
Sbjct: 235 EGRIDEACRLFDMMPEKDVVTRTNMIGG----------YCQVGRLVEARMLFDEMPRRNV 284

Query: 359 VLWRTLLGSCKIHRNVEIG 377
           V W T++     ++ V+I 
Sbjct: 285 VSWTTMITGYVQNQQVDIA 303



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 81/199 (40%), Gaps = 16/199 (8%)

Query: 11  GLNKARQAHEIHGEWL-----LNSYAISV-------SSSLSYAQLLFNQIQNPQTQAWNS 58
           GL       EIH + +     L+ Y  SV         +L+ A+ +F++        WNS
Sbjct: 424 GLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNS 483

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL-HGFVIR 117
           +I  +AQ    ++A+  ++ M  + +  PD  TF   L AC     + K  E+ +    +
Sbjct: 484 IITGYAQHGLGVEALRVFHDMHFSGIM-PDDVTFVGVLSACSYTGNVKKGLEIFNSMETK 542

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-ERDLVSWNSII-SCYTQASFHLEAL 175
              E+ +     ++      G +  A  + + MP E D + W +++ +C T     L  +
Sbjct: 543 YQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEV 602

Query: 176 KLYERMRFEDVGLDGFTLV 194
              + +  E      F L+
Sbjct: 603 AAKKLLVLEPKNAGPFILL 621


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 184/523 (35%), Positives = 289/523 (55%), Gaps = 19/523 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F ++      +W ++I  +++     +A+  +  M+   ++  D      TL AC  +K
Sbjct: 98  VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT-IDQHVLCSTLGACGALK 156

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVSWNSII 162
           A    + +H  V++ G+E  + V   L   Y+  G +E+A +VF    E R++VS+  +I
Sbjct: 157 ACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLI 216

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
             Y +     + L ++  +R + +  + FT   L+ +CA+  AL  G  LH    ++ F 
Sbjct: 217 DGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFD 276

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
           E  +V + LVDMY KCG L+ A   F  +     ++WNS++  +G HG G +AI  F++M
Sbjct: 277 EDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERM 336

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
           +  G  P++ITF+ LL GCSH GLVEEG++YF+ M   Y + PG +HY C++DL GRAG+
Sbjct: 337 VDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGR 396

Query: 343 LEKALEVINTSSPSDPVL--WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
           L++A E IN   P +P    W + LG+C+IH + E+G++A + LV+LE  ++G  VLL+ 
Sbjct: 397 LKEAKEFIN-RMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSN 455

Query: 401 IYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE 460
           IYA  +  E V   R  ++   +K  PG+SW+++G + H F  +D SHP    IY KL+ 
Sbjct: 456 IYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDT 515

Query: 461 IMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
           ++ + K  GY      V +    S    EK    HSE++A+AF L + P G  + + KNL
Sbjct: 516 LLDQIKAAGYVPRTDSVPLDMDDS--MKEKLLHRHSERIAVAFALISMPIGKPIIVKKNL 573

Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R            S    R +IVRD  R+HHF DG CSCGDYW
Sbjct: 574 RVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 164/318 (51%), Gaps = 5/318 (1%)

Query: 51  PQTQ--AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKC 108
           PQ    +W ++I   +Q+    +AI  +  M +     P  F F+  ++AC  + ++   
Sbjct: 2   PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICG-EVPTQFAFSSAIRACASLGSIEMG 60

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           +++H   ++ G    + V +NL   Y+  G +  A  VF+ MP +D VSW ++I  Y++ 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
               EAL  +++M  E+V +D   L   L +C  + A   G  +H    ++GF   ++VG
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRK-RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
           NAL DMY+K G+++SA  VF    + R+V+S+  +I GY    + ++ +S F ++   G 
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            P+  TF  L+  C++Q  +E+G +  H  V + N          LVD+YG+ G LE+A+
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAI 299

Query: 348 EVINTSSPSDPVLWRTLL 365
           +  +       + W +L+
Sbjct: 300 QAFDEIGDPTEIAWNSLV 317



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 128/279 (45%), Gaps = 12/279 (4%)

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           MP+R+LVSW ++IS  +Q S   EA++ +  MR        F     + +CA +G++ MG
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H +A + G    ++VG+ L DMY+KCG +  A  VF  M  +D +SW +MI GY   
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G  +EA+  FK+M+      D       L  C      + G    H  V +   +  I  
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFG-RSVHSSVVKLGFESDIFV 179

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEI--AMKNLVQL 387
              L D+Y +AG +E A  V    S    V+  T    C I   VE  +I   +   V+L
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYT----CLIDGYVETEQIEKGLSVFVEL 235

Query: 388 --EAASAGDYVLLATIYACTKD---EEGVARTRKLIKSN 421
             +     ++   + I AC      E+G     +++K N
Sbjct: 236 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKIN 274


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 188/529 (35%), Positives = 290/529 (54%), Gaps = 27/529 (5%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A++LF+++      +W ++I  + Q+     A       L   +   +  ++T  LK
Sbjct: 269 LVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIA-----RKLFEVMPEKNEVSWTAMLK 323

Query: 98  ACERVKALNKCQEL-HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
                  L++  EL +   I+S     VV    ++  +  NG +  AR VFD M E+D  
Sbjct: 324 GYTNCGRLDEASELFNAMPIKS-----VVACNAMILCFGQNGEVPKARQVFDQMREKDEG 378

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           +W+++I  Y +    L+AL+L+  M+ E +  +  +L+ +LS CA +  L+ G  +H   
Sbjct: 379 TWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQL 438

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
               F   VYV + L+ MY KCGNL  A  VF R   +DV+ WNS+I GY  HG G EA+
Sbjct: 439 VRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEAL 498

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F  M  +G  PD +TF+G+L  CS+ G V++G+E F+ M ++Y ++  I+HY C+VDL
Sbjct: 499 RVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDL 558

Query: 337 YGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            GRAGKL +A+++I      +D ++W  LLG+C+ H  +++ E+A K L+ LE  +AG +
Sbjct: 559 LGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPF 618

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKS-HPDADMI 454
           +LL+ IYA     + VA  R+ ++   +   PG SWI +  +VHKF   D S HP+   I
Sbjct: 619 ILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEI 678

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
            R LE +    +  GY  D+S V       E    +S  YHSEKLA+A+GL   P G  +
Sbjct: 679 NRILEWLSGLLREAGYYPDQSFVLHDVDEEEKV--QSLEYHSEKLAVAYGLLKIPIGMPI 736

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++KNLR            +    R++I+RD  R+HHF+DG CSC DYW
Sbjct: 737 RVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 157/369 (42%), Gaps = 58/369 (15%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
            +  A+++F+++++    +WNS++  + Q+  P +A   ++ M                 
Sbjct: 113 QIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----------------- 155

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
                                   ER  +    L+ GY  NG+I  AR VFD MPER++V
Sbjct: 156 -----------------------SERNTISWNGLVSGYINNGMINEAREVFDRMPERNVV 192

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW +++  Y +     EA  L+ +M  ++V     +   +L      G ++    L  + 
Sbjct: 193 SWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVMLGGLLQEGRIDEACRLFDMM 248

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            E    + V     ++  Y + G L  A  +F  M +R+V+SW +MI GY  + + D A 
Sbjct: 249 PE----KDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIAR 304

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F+ M       + +++  +L G ++ G ++E  E F+ M  +      +     ++  
Sbjct: 305 KLFEVMP----EKNEVSWTAMLKGYTNCGRLDEASELFNAMPIK-----SVVACNAMILC 355

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           +G+ G++ KA +V +     D   W  ++   +  + +E+  + +  ++Q E        
Sbjct: 356 FGQNGEVPKARQVFDQMREKDEGTWSAMIKVYE-RKGLELDALELFRMMQREGIRPNFPS 414

Query: 397 LLATIYACT 405
           L++ +  C 
Sbjct: 415 LISVLSVCA 423



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 110/259 (42%), Gaps = 58/259 (22%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           ++   +L+  Y+  G IE AR VFD M +++++SWNSI++ Y Q     EA  ++++M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
            +                                           N LV  Y   G ++ 
Sbjct: 158 RN---------------------------------------TISWNGLVSGYINNGMINE 178

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  VF RM +R+V+SW +M+ GY   G   EA + F QM       + +++  +L G   
Sbjct: 179 AREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMP----EKNVVSWTVMLGGLLQ 234

Query: 304 QGLVEEGVEYFHMM-----VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
           +G ++E    F MM     V+R N+  G          Y + G+L +A  + +     + 
Sbjct: 235 EGRIDEACRLFDMMPEKDVVTRTNMIGG----------YCQVGRLVEARMLFDEMPRRNV 284

Query: 359 VLWRTLLGSCKIHRNVEIG 377
           V W T++     ++ V+I 
Sbjct: 285 VSWTTMITGYVQNQQVDIA 303



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 81/199 (40%), Gaps = 16/199 (8%)

Query: 11  GLNKARQAHEIHGEWL-----LNSYAISV-------SSSLSYAQLLFNQIQNPQTQAWNS 58
           GL       EIH + +     L+ Y  SV         +L+ A+ +F++        WNS
Sbjct: 424 GLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNS 483

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL-HGFVIR 117
           +I  +AQ    ++A+  ++ M  + +  PD  TF   L AC     + K  E+ +    +
Sbjct: 484 IITGYAQHGLGVEALRVFHDMHFSGIM-PDDVTFVGVLSACSYTGNVKKGLEIFNSMETK 542

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-ERDLVSWNSII-SCYTQASFHLEAL 175
              E+ +     ++      G +  A  + + MP E D + W +++ +C T     L  +
Sbjct: 543 YQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEV 602

Query: 176 KLYERMRFEDVGLDGFTLV 194
              + +  E      F L+
Sbjct: 603 AAKKLLVLEPKNAGPFILL 621


>gi|297846398|ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336922|gb|EFH67339.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 562

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 187/487 (38%), Positives = 275/487 (56%), Gaps = 10/487 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS-- 83
           LL   AIS    LS+A  +F  I  P T  WN++IR FA S  P  A  +Y  ML  S  
Sbjct: 41  LLERCAISPFGDLSFAVKIFRHIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQRSSS 100

Query: 84  --LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
             L R D  T +FTLKAC R    +   ++H  + R G+    ++ T L+  Y+ NG + 
Sbjct: 101 SALCRVDALTCSFTLKACARALCSSAMVQIHCQISRRGFSADALLCTTLLDAYSKNGDLI 160

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
           +A  +FD M  RD+ SWN++I+     +   EAL+LY+RM  E +     T+V  L +C+
Sbjct: 161 SALKLFDEMSVRDVASWNALIAGLVAGNRASEALELYKRMEMEGIRRSEVTVVAALGACS 220

Query: 202 HVGALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSW 259
           H+G +  G   LH    +     +V V NA++DMY+KCG +D AF VF +   K+ V++W
Sbjct: 221 HLGDVKEGEKILHGYIKDEKLDHNVIVSNAVIDMYSKCGFVDKAFQVFEQFTGKKSVVTW 280

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           N+MI G+ VHG    A+  F+++   G  PD +++L  L  C H GLVE G+  F+ M  
Sbjct: 281 NTMITGFSVHGEAHRALEIFEKLEHNGIKPDDVSYLAALTACRHTGLVEYGISIFNNMAC 340

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
              ++P +KHYGC+VDL  RAG+L +A ++I + S   DPVLW++LLG+ +IH NVE+ E
Sbjct: 341 N-GVEPNMKHYGCVVDLLSRAGRLREAHDIICSMSMVPDPVLWQSLLGASEIHNNVEMAE 399

Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
           IA + + ++   + GD+VLL+ +YA     + V   R  ++S  +K  PG S+IE    +
Sbjct: 400 IASRKIKEMGVNNDGDFVLLSNVYAAQGRWKDVGLVRDDMESKQVKKVPGISYIEAKGTI 459

Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           H+F   DKSH     IY K++EI  + +  GY     LV       E   E +  YHSEK
Sbjct: 460 HQFHNSDKSHEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEK--ENALCYHSEK 517

Query: 499 LAIAFGL 505
           LA+A+GL
Sbjct: 518 LAVAYGL 524


>gi|9758246|dbj|BAB08745.1| unnamed protein product [Arabidopsis thaliana]
          Length = 511

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 172/424 (40%), Positives = 262/424 (61%), Gaps = 21/424 (4%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCA 201
           A+ V  N  ++++++WN +I  Y +   + EALK  + M  F D+  + F+    L++CA
Sbjct: 94  AKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACA 153

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
            +G L+   ++H +  + G   +  + +ALVD+YAKCG++ ++  VF  +++ DV  WN+
Sbjct: 154 RLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNA 213

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI G+  HG   EAI  F +M      PDSITFLGLL  CSH GL+EEG EYF +M  R+
Sbjct: 214 MITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRF 273

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEI 379
           +++P ++HYG +VDL GRAG++++A E+I  S P +P  V+WR+LL S + ++N E+GEI
Sbjct: 274 SIQPKLEHYGAMVDLLGRAGRVKEAYELIE-SMPIEPDVVIWRSLLSSSRTYKNPELGEI 332

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
           A++NL +   A +GDYVLL+ IY+ TK  E   + R+L+   GI+   G SW+E G  +H
Sbjct: 333 AIQNLSK---AKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIH 389

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
           +F   D SH +   IY+ LE ++ + K  G+  D  LV +  S  E   E++  YHSEKL
Sbjct: 390 RFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEK--EENLNYHSEKL 447

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           A+A+ +  +  GT +RI KN+R            S   +R +I+RDR+R+H F DGLCSC
Sbjct: 448 ALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSC 507

Query: 548 GDYW 551
            DYW
Sbjct: 508 RDYW 511



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 112/225 (49%), Gaps = 2/225 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +     +     WN +I  + +++   +A+    +ML  +  +P+ F+F  +L AC 
Sbjct: 94  AKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACA 153

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R+  L+  + +H  +I SG E   ++S+ L+  YA  G I  +R VF ++   D+  WN+
Sbjct: 154 RLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNA 213

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEM 219
           +I+ +       EA++++  M  E V  D  T + LL++C+H G L  G  +   ++   
Sbjct: 214 MITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRF 273

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
                +    A+VD+  + G +  A+ +   M  + DV+ W S++
Sbjct: 274 SIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLL 318



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 10/188 (5%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGF 287
           N +++   K G    A  V      ++V++WN MI GY  + + +EA+   K ML     
Sbjct: 79  NLIIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDI 138

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            P+  +F   L  C+  G +    ++ H ++    ++        LVD+Y + G +  + 
Sbjct: 139 KPNKFSFASSLAACARLGDLHHA-KWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSR 197

Query: 348 EVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS-AGDYV----LLATIY 402
           EV  +   +D  +W  ++     H    +   A++   ++EA   + D +    LL T  
Sbjct: 198 EVFYSVKRNDVSIWNAMITGFATH---GLATEAIRVFSEMEAEHVSPDSITFLGLLTTCS 254

Query: 403 ACTKDEEG 410
            C   EEG
Sbjct: 255 HCGLLEEG 262


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 200/634 (31%), Positives = 323/634 (50%), Gaps = 113/634 (17%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LL  Y+    + L YA+ +F++IQ      WN++I+ + ++      I  ++ ++   L 
Sbjct: 51  LLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL- 109

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSG--------------YERC-------- 123
            PD FT    +K C R+  + + +++HG  ++ G              Y +C        
Sbjct: 110 -PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARK 168

Query: 124 ---------VVVSTNLMRGYAANGVI-------------------------------EAA 143
                    VV+  +L+ GYA  G I                               E+A
Sbjct: 169 VFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESA 228

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV----------GLDG--- 190
           R +FD MP R+LVSWN++I+ Y ++     AL+L+ +M   D+           L+G   
Sbjct: 229 RKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFM 288

Query: 191 ------------------FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
                              TLV +LS+ + +  L  G ++H    + GF     +G +L+
Sbjct: 289 DAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLI 348

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           +MYAKCG ++SA  VF  ++K+ V  W ++IVG G+HG  + A++ F +M   G  P++I
Sbjct: 349 EMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAI 408

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-N 351
            F+G+L  C+H GLV++G +YF MM++ Y ++P ++HYGCLVD+  RAG LE+A   I N
Sbjct: 409 IFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIEN 468

Query: 352 TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
                + V+W +LLG  + H  ++IGE A + ++++   + G Y+LL+ +YA +   E V
Sbjct: 469 MPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKV 528

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
           +  R+++   G +  PG S +E    +H+F+V D SHP    IY K+ E+  + K +G+ 
Sbjct: 529 SHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHV 588

Query: 472 KDES--LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-------- 521
            D +  L+ + G   +   E     HSE+LAIAFGL     G  +RI+KNLR        
Sbjct: 589 PDTTQVLLCIEGEKEK---EAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSV 645

Query: 522 ----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
               S  YSR++IVRD  R+HHF++G CSC DYW
Sbjct: 646 TKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 138/264 (52%), Gaps = 12/264 (4%)

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV--IEAARSVFDNMPERDLVSWNSI 161
           A  + ++LH F +++       VS+ L+  Y+   +  +  ARS+FD +  R L+ WN+I
Sbjct: 25  APQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTI 84

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           I CY +  F  + + L+  +  E +  D FTL C++  CA +G +  G  +H +A ++GF
Sbjct: 85  IKCYVENQFSHDGIVLFHELVHEYLP-DNFTLPCVIKGCARLGVVQEGKQIHGLALKIGF 143

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
              V+V  +LV+MY+KCG +D A  VF  M  +DV+ WNS+I GY   G  D A+  F++
Sbjct: 144 GSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEE 203

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           M       D+ ++  L+ G S  G VE   + F  M  R      +  +  +++ Y ++G
Sbjct: 204 MP----ERDAFSWTVLVDGLSKCGKVESARKLFDQMPCR-----NLVSWNAMINGYMKSG 254

Query: 342 KLEKALEVINTSSPSDPVLWRTLL 365
             + ALE+       D V W  ++
Sbjct: 255 DFDSALELFYQMPIWDLVTWNLMI 278


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 210/561 (37%), Positives = 303/561 (54%), Gaps = 39/561 (6%)

Query: 18  AHEIHGEWLLNSYAISVS------------SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
           A E+HG  +   +A  V+              +  A+ +F+++      +W ++I  + +
Sbjct: 315 AKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEK 374

Query: 66  SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV 125
           +  P +A+  Y  M + ++S PD  T    L AC  + +L+   +LH      G+   VV
Sbjct: 375 NGFPDKALEVYALMEVNNVS-PDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVV 433

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS--CYTQASFHLEALKLYERMRF 183
           V+  L+  YA +  I+ A  VF  MPE+D+VSW+S+I+  C+   +F  EAL  +  M  
Sbjct: 434 VTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNF--EALYYFRHM-L 490

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
            DV  +  T +  L++CA  GAL  G  +H      G     Y+ NAL+D+Y KCG    
Sbjct: 491 ADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGY 550

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A+  F     +DV+SWN MI G+  HG G+ A+SFF QM+  G  PD +TF+ LLC CS 
Sbjct: 551 AWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSR 610

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWR 362
            G+V EG E FH M  +Y++ P +KHY C+VDL  R G+L +A   IN      D  +W 
Sbjct: 611 GGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWG 670

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
            LL  C+IHR+VE+GE+A K +++LE   AG +VLL  +YA     + +AR RK ++  G
Sbjct: 671 ALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKG 730

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           +    G SW+E+   VH F+ DD+SHP    I   LE I  R K  G    ES       
Sbjct: 731 LDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYERMKASGCAPVES------H 784

Query: 483 SSEDFLEKSSAY--HSEKLAIAFGLATTPDGTSLRIVKN----------LRSIAY--SRD 528
           S ED + K   +  HSE+LA+AFGL  T  GTS+ + KN          L+ I+Y   RD
Sbjct: 785 SPEDKVLKDDIFCGHSERLAVAFGLINTTPGTSISVTKNQYTCQSCHRILKMISYIVRRD 844

Query: 529 LIVRDRVRYHHFRDGLCSCGD 549
           +IVRD  + HHF+DG CSCGD
Sbjct: 845 IIVRDSKQVHHFKDGSCSCGD 865



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 170/337 (50%), Gaps = 3/337 (0%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           +A  +F ++      +WN ++  + ++    +A+  Y+ M+ A + RPD +TF   L++C
Sbjct: 147 HAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGV-RPDVYTFPCVLRSC 205

Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
             V      +E+H  V+R G+   V V   LM  YA  G + AAR VFD+M   D +SWN
Sbjct: 206 GGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWN 265

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
           ++I+ + +       L+L+  M  ++V  +  T+  +  +   +  +     +H +A + 
Sbjct: 266 AMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKR 325

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
           GF   V   N+L+ MYA  G +  A  VFSRM  RD +SW +MI GY  +G  D+A+  +
Sbjct: 326 GFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVY 385

Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
             M +    PD IT    L  C+  G ++ GV+  H +         +     L+++Y +
Sbjct: 386 ALMEVNNVSPDDITIASALAACACLGSLDVGVK-LHELAESKGFMSYVVVTNALLEMYAK 444

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVE 375
           + +++KA+EV       D V W +++ G C  HRN E
Sbjct: 445 SKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFE 481



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 204/410 (49%), Gaps = 16/410 (3%)

Query: 1   MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
           MG + HA  +    A +   ++   L+  YA      +  A+ +F+ +      +WN++I
Sbjct: 213 MGREVHAHVLRFGFAEEVDVLNA--LMTMYA--KCGDVVAARKVFDSMAVMDCISWNAMI 268

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
               ++      +  +  ML   + +P+  T T    A   +  +   +E+HG  ++ G+
Sbjct: 269 AGHFENGECNAGLELFLTMLQDEV-QPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGF 327

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
              V    +L++ YA+ G++  AR+VF  M  RD +SW ++IS Y +  F  +AL++Y  
Sbjct: 328 ATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYAL 387

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M   +V  D  T+   L++CA +G+L++G+ LH +A   GF+  V V NAL++MYAK   
Sbjct: 388 MEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKR 447

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           +D A  VF  M ++DV+SW+SMI G+  + R  EA+ +F+ ML A   P+S+TF+  L  
Sbjct: 448 IDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAA 506

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG----CLVDLYGRAGKLEKALEVINTSSPS 356
           C+  G +  G E     +  + L+ GI + G     L+DLY + G+   A          
Sbjct: 507 CAATGALRSGKE-----IHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAK 561

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
           D V W  ++     H N E        +V++      +   +A + AC++
Sbjct: 562 DVVSWNIMIAGFVAHGNGETALSFFNQMVKI-GECPDEVTFVALLCACSR 610



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           +GNA++ M  + G    A+ VF++M +RDV SWN M+ GYG  G  +EA+  + +M+ AG
Sbjct: 131 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAG 190

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
             PD  TF  +L  C        G E  H  V R+     +     L+ +Y + G +  A
Sbjct: 191 VRPDVYTFPCVLRSCGGVPDWRMGRE-VHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAA 249

Query: 347 LEVINTSSPSDPVLWRTLLG 366
            +V ++ +  D + W  ++ 
Sbjct: 250 RKVFDSMAVMDCISWNAMIA 269


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 184/528 (34%), Positives = 285/528 (53%), Gaps = 18/528 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF+++       WN+++          +++ ++  M    +  PD F      +
Sbjct: 185 LGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGM-HPDEFGLGSVFR 243

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C  ++ +   +++H +V+RSG +R + V ++L   Y   G ++   +V   +P   +VS
Sbjct: 244 CCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVS 303

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
            N+II+  TQ      AL+ +  MR   V  D  T V  +SSC+ + AL  G  +H    
Sbjct: 304 CNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVM 363

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G  + V V   LV MY++CG L  +  VF      D    ++MI  YG HG G +AI 
Sbjct: 364 KAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIE 423

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            FKQM+  G  P  +TFL LL  CSH GL EEG++ F +M   Y ++P +KHY C+VDL 
Sbjct: 424 LFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLL 483

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GR+G L++A E +  S P  P  V+W+TLL +CK  +N ++ E   K +++L+   +  Y
Sbjct: 484 GRSGCLDEA-EALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASY 542

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ I A ++    V+  RK ++ N ++  PG SW+E+   +H+F   D+SHP    I 
Sbjct: 543 VLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEID 602

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
             LEE+M + +  GY+ D S+V       E   E S ++HSEKLAIAF   + P+G  +R
Sbjct: 603 ECLEEMMAKIRQCGYSPDMSMVLHDMEDEEK--EVSLSHHSEKLAIAFAFLSLPEGVPIR 660

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++KNLR            S    R+++VRD  R+HHF+DG CSC DYW
Sbjct: 661 VMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 169/382 (44%), Gaps = 22/382 (5%)

Query: 56  WNSLIRAFA------QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ 109
           W+   R F+      ++L PL+ +  +      S +  D FT    + A   +  L   +
Sbjct: 102 WSDAARLFSHLFRACRALRPLRQLHAFA---ATSGAATDRFTANHLMLAYADLGDLTAAR 158

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           EL   + R    R V+    L  GY  NG +  AR +FD MPER++ +WN++++  T   
Sbjct: 159 ELFERIPR----RNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLG 214

Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
           F  E+L  +  MR E +  D F L  +   CA +  +  G  +H      G    + VG+
Sbjct: 215 FDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGS 274

Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
           +L  MY +CG L     V   +    ++S N++I G   +G  + A+ +F  M   G   
Sbjct: 275 SLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAA 334

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           D +TF+  +  CS    + +G +  H  V +  +   +    CLV +Y R G L  +  V
Sbjct: 335 DVVTFVSAISSCSDLAALAQG-QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERV 393

Query: 350 INTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLATIYACTKD 407
                 SD  L   ++ +   H +   G+ A++   Q+    A   D   LA +YAC+  
Sbjct: 394 FFGYCGSDTFLLSAMISAYGFHGH---GQKAIELFKQMMNGGAEPSDVTFLALLYACSHS 450

Query: 408 ---EEGVARTRKLIKSNGIKTT 426
              EEG+     + K+ G++ +
Sbjct: 451 GLKEEGMDCFELMTKTYGMQPS 472


>gi|145359106|ref|NP_199912.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635749|sp|Q9FI49.2|PP428_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g50990
 gi|332008636|gb|AED96019.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 534

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 172/424 (40%), Positives = 262/424 (61%), Gaps = 21/424 (4%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCA 201
           A+ V  N  ++++++WN +I  Y +   + EALK  + M  F D+  + F+    L++CA
Sbjct: 117 AKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACA 176

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
            +G L+   ++H +  + G   +  + +ALVD+YAKCG++ ++  VF  +++ DV  WN+
Sbjct: 177 RLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNA 236

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI G+  HG   EAI  F +M      PDSITFLGLL  CSH GL+EEG EYF +M  R+
Sbjct: 237 MITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRF 296

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEI 379
           +++P ++HYG +VDL GRAG++++A E+I  S P +P  V+WR+LL S + ++N E+GEI
Sbjct: 297 SIQPKLEHYGAMVDLLGRAGRVKEAYELIE-SMPIEPDVVIWRSLLSSSRTYKNPELGEI 355

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
           A++NL +   A +GDYVLL+ IY+ TK  E   + R+L+   GI+   G SW+E G  +H
Sbjct: 356 AIQNLSK---AKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIH 412

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
           +F   D SH +   IY+ LE ++ + K  G+  D  LV +  S  E   E++  YHSEKL
Sbjct: 413 RFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEK--EENLNYHSEKL 470

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           A+A+ +  +  GT +RI KN+R            S   +R +I+RDR+R+H F DGLCSC
Sbjct: 471 ALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSC 530

Query: 548 GDYW 551
            DYW
Sbjct: 531 RDYW 534



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 112/225 (49%), Gaps = 2/225 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +     +     WN +I  + +++   +A+    +ML  +  +P+ F+F  +L AC 
Sbjct: 117 AKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACA 176

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R+  L+  + +H  +I SG E   ++S+ L+  YA  G I  +R VF ++   D+  WN+
Sbjct: 177 RLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNA 236

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEM 219
           +I+ +       EA++++  M  E V  D  T + LL++C+H G L  G  +   ++   
Sbjct: 237 MITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRF 296

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
                +    A+VD+  + G +  A+ +   M  + DV+ W S++
Sbjct: 297 SIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLL 341



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 10/188 (5%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGF 287
           N +++   K G    A  V      ++V++WN MI GY  + + +EA+   K ML     
Sbjct: 102 NLIIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDI 161

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            P+  +F   L  C+  G +    ++ H ++    ++        LVD+Y + G +  + 
Sbjct: 162 KPNKFSFASSLAACARLGDLHHA-KWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSR 220

Query: 348 EVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG-DYV----LLATIY 402
           EV  +   +D  +W  ++     H    +   A++   ++EA     D +    LL T  
Sbjct: 221 EVFYSVKRNDVSIWNAMITGFATH---GLATEAIRVFSEMEAEHVSPDSITFLGLLTTCS 277

Query: 403 ACTKDEEG 410
            C   EEG
Sbjct: 278 HCGLLEEG 285


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 188/530 (35%), Positives = 276/530 (52%), Gaps = 25/530 (4%)

Query: 38   LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
            L  A+ +F+++ +    +W +++ A A++    +    +  M +  +  PD FT   TL 
Sbjct: 588  LEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVI-PDKFTLATTLD 646

Query: 98   ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
             C     L   + +H  V   G E  + V   L+  Y+  G    A S F+ M  RDLVS
Sbjct: 647  TCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVS 706

Query: 158  WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
            WN + + Y QA    EA+ L+  M+ E V  D  T    L+       ++ G   H +A 
Sbjct: 707  WNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAA 766

Query: 218  EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            E G    V V   LV +YAKCG LD A  +F    +  V+  N++I     HG  +EA+ 
Sbjct: 767  ESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVK 826

Query: 278  FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
             F +M   G  PD  T + ++  C H G+VEEG   F  M   + + P ++HY C VDL 
Sbjct: 827  MFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLL 886

Query: 338  GRAGKLEKALEVINTSSPSDPVL-WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            GRAG+LE A ++I      D  L W +LLG+CK+  + E+GE   + +++L+  ++  +V
Sbjct: 887  GRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHV 946

Query: 397  LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY- 455
            +L+ IY  T   +     RK +    +K  PG SW+EIG QVH+FV  D+SHP  D IY 
Sbjct: 947  VLSNIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYV 1006

Query: 456  --RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
               KLE +M RA   GY  D+ L      + ++  EK+  YHSE++AIAFGL  TP  T+
Sbjct: 1007 VLDKLELLMRRA---GYEADKGL-----DAEDELKEKALGYHSERIAIAFGLIATPPDTT 1058

Query: 514  LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            L+IVKNLR            S+   R++IVRD +R+HHF +G CSC D W
Sbjct: 1059 LKIVKNLRVCGDCHTATKYISMIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 184/398 (46%), Gaps = 18/398 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQ--AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S++ A+L+F ++  P      WN ++ A+AQ+    +A      ML   +  PD  +FT 
Sbjct: 488 SIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGV-LPDALSFTS 546

Query: 95  TLKAC---ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
            L +C   +  + L  C      ++ SGY R   + T L+  +     +E ARSVFD M 
Sbjct: 547 VLSSCYCSQEAQVLRMC------ILESGY-RSACLETALISMHGRCRELEQARSVFDEMD 599

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
             D+VSW +++S   +     E   L+ RM+ E V  D FTL   L +C     L +G  
Sbjct: 600 HGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKI 659

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H    E+G    + V NAL++MY+ CG+   A   F  M+ RD++SWN M   Y   G 
Sbjct: 660 IHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGL 719

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
             EA+  F+ M + G  PD +TF   L       LV +G + FH + +   L   +    
Sbjct: 720 AKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDG-KLFHGLAAESGLDSDVSVAT 778

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
            LV LY + GKL++A+ +   +     VL   ++G+   H   E   + M   +Q E   
Sbjct: 779 GLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEA-VKMFWKMQQEGVR 837

Query: 392 AGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTT 426
                L++ I AC      EEG +    + +  GI  T
Sbjct: 838 PDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPT 875



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 177/372 (47%), Gaps = 14/372 (3%)

Query: 5   KHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFA 64
           K A  +  N   + H   G  L+N Y      SL  A  +F++++     +W +LI A A
Sbjct: 45  KRAHELIANAGLEQHLFLGNCLINMYV--RCGSLEEAHAIFSKMEERNVVSWTALISANA 102

Query: 65  QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER-- 122
           QS +  +A   +  ML+ S + P+++T    L AC   + L   + +H  +   G ER  
Sbjct: 103 QSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERES 162

Query: 123 --CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA-SFHLEALKLYE 179
               +V   ++  YA  G  E A +VF  +PE+D+VSW ++   Y Q   F+ +AL+++ 
Sbjct: 163 TTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFR 222

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
            M  + +  +  T +  L +C    +L  G +LH +  E G       GNAL++MY KCG
Sbjct: 223 EMLLQPLAPNVITFITALGACT---SLRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCG 279

Query: 240 NLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           + + A+ VF  M  R   D++SWN+MI      GR  +A++ F+++ + G  P+S+T + 
Sbjct: 280 DWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLIT 339

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSP 355
           +L   +  G+       FH  +        +     ++ +Y + G    A  V       
Sbjct: 340 ILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWK 399

Query: 356 SDPVLWRTLLGS 367
            D + W T+LG+
Sbjct: 400 CDVISWNTMLGA 411



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 177/368 (48%), Gaps = 18/368 (4%)

Query: 10  VGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS--L 67
           +GL +      + G  ++N YA   S   + A  +F  I      +W ++  A+AQ    
Sbjct: 156 LGLERESTTATLVGNAMINMYAKCGSPEDAIA--VFLTIPEKDVVSWTAMAGAYAQERRF 213

Query: 68  SPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
            P  A+  +  ML+  L+ P+  TF   L AC    +L     LH  +  +G     +  
Sbjct: 214 YP-DALRIFREMLLQPLA-PNVITFITALGAC---TSLRDGTWLHSLLHEAGLGFDPLAG 268

Query: 128 TNLMRGYAANGVIEAARSVFDNMPER---DLVSWNSIISCYTQASFHLEALKLYERMRFE 184
             L+  Y   G  E A  VF  M  R   DLVSWN++IS   +A  H +A+ ++ R+R E
Sbjct: 269 NALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLE 328

Query: 185 DVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
            +  +  TL+ +L++ A  G         H    E G++  V VGNA++ MYAKCG   +
Sbjct: 329 GMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSA 388

Query: 244 AFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
           A+ VF R+R K DV+SWN+M+          + ++ F  ML+AG  P+ ++F+ +L  CS
Sbjct: 389 AWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACS 448

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPV 359
           +   ++ G +   ++++R            LV +YG+ G + +A E++    P      V
Sbjct: 449 NSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEA-ELVFKEMPLPSRSLV 507

Query: 360 LWRTLLGS 367
            W  +LG+
Sbjct: 508 TWNVMLGA 515



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 143/289 (49%), Gaps = 13/289 (4%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D   +T  L++C     L K +  H  +  +G E+ + +   L+  Y   G +E A ++F
Sbjct: 24  DLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIF 83

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGAL 206
             M ER++VSW ++IS   Q+     A  L+  M  E     + +TLV +L++CA+   L
Sbjct: 84  SKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDL 143

Query: 207 NMGIFLHRIACEMGF----VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
            +G  +H +  E+G       +  VGNA+++MYAKCG+ + A  VF  + ++DV+SW +M
Sbjct: 144 AIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAM 203

Query: 263 IVGYGVHGRG-DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
              Y    R   +A+  F++ML+    P+ ITF+  L  C+    + +G  + H ++   
Sbjct: 204 AGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGT-WLHSLLHEA 259

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGS 367
            L         L+++YG+ G  E A  V    +     D V W  ++ +
Sbjct: 260 GLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISA 308



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL SC     L  G   H +    G  + +++GN L++MY +CG+L+ A  +FS+M +R+
Sbjct: 31  LLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERN 90

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           V+SW ++I      G    A + F+ ML+ +   P+S T + +L  C++   +  G    
Sbjct: 91  VVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIG-RSI 149

Query: 315 HMMVSRYNLK----PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI 370
           H M+    L+            ++++Y + G  E A+ V  T    D V W  + G+   
Sbjct: 150 HAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQ 209

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
            R      + +   + L+  +      +  + ACT   +G 
Sbjct: 210 ERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRDGT 250


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 184/523 (35%), Positives = 289/523 (55%), Gaps = 19/523 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F ++      +W ++I  +++     +A+  +  M+   ++  D      TL AC  +K
Sbjct: 163 VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT-IDQHVLCSTLGACGALK 221

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVSWNSII 162
           A    + +H  V++ G+E  + V   L   Y+  G +E+A +VF    E R++VS+  +I
Sbjct: 222 ACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLI 281

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
             Y +     + L ++  +R + +  + FT   L+ +CA+  AL  G  LH    ++ F 
Sbjct: 282 DGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFD 341

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
           E  +V + LVDMY KCG L+ A   F  +     ++WNS++  +G HG G +AI  F++M
Sbjct: 342 EDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERM 401

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
           +  G  P++ITF+ LL GCSH GLVEEG++YF+ M   Y + PG +HY C++DL GRAG+
Sbjct: 402 VDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGR 461

Query: 343 LEKALEVINTSSPSDPVL--WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
           L++A E IN   P +P    W + LG+C+IH + E+G++A + LV+LE  ++G  VLL+ 
Sbjct: 462 LKEAKEFIN-RMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSN 520

Query: 401 IYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE 460
           IYA  +  E V   R  ++   +K  PG+SW+++G + H F  +D SHP    IY KL+ 
Sbjct: 521 IYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDT 580

Query: 461 IMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
           ++ + K  GY      V +    S    EK    HSE++A+AF L + P G  + + KNL
Sbjct: 581 LLDQIKAAGYVPRTDSVPLDMDDS--MKEKLLHRHSERIAVAFALISMPIGKPIIVKKNL 638

Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R            S    R +IVRD  R+HHF DG CSCGDYW
Sbjct: 639 RVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 174/341 (51%), Gaps = 5/341 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S    L +A  LF+ +      +W ++I   +Q+    +AI  +  M +    
Sbjct: 46  LVNMY--SKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICG-E 102

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P  F F+  ++AC  + ++   +++H   ++ G    + V +NL   Y+  G +  A  
Sbjct: 103 VPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACK 162

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF+ MP +D VSW ++I  Y++     EAL  +++M  E+V +D   L   L +C  + A
Sbjct: 163 VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKA 222

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-RDVLSWNSMIV 264
              G  +H    ++GF   ++VGNAL DMY+K G+++SA  VF    + R+V+S+  +I 
Sbjct: 223 CKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLID 282

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GY    + ++ +S F ++   G  P+  TF  L+  C++Q  +E+G +  H  V + N  
Sbjct: 283 GYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQ-LHAQVMKINFD 341

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                   LVD+YG+ G LE+A++  +       + W +L+
Sbjct: 342 EDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLV 382



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 160/341 (46%), Gaps = 12/341 (3%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           DT      ++   + K L + ++LH  +I +GY  C  ++ +L+  Y+  G ++ A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D MP+R+LVSW ++IS  +Q S   EA++ +  MR        F     + +CA +G++ 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           MG  +H +A + G    ++VG+ L DMY+KCG +  A  VF  M  +D +SW +MI GY 
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
             G  +EA+  FK+M+      D       L  C      + G    H  V +   +  I
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFG-RSVHSSVVKLGFESDI 242

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEI--AMKNLV 385
                L D+Y +AG +E A  V    S    V+  T    C I   VE  +I   +   V
Sbjct: 243 FVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYT----CLIDGYVETEQIEKGLSVFV 298

Query: 386 QL--EAASAGDYVLLATIYACTKD---EEGVARTRKLIKSN 421
           +L  +     ++   + I AC      E+G     +++K N
Sbjct: 299 ELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKIN 339


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 187/553 (33%), Positives = 296/553 (53%), Gaps = 47/553 (8%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LFNQ+ +    +W S++ A  Q+  P   +  +  M      +PD + F   +KAC  + 
Sbjct: 60  LFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILG 119

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           A+ + +++H   I S      VV ++L+  YA  G+ +  R VFD++  ++ +SW ++IS
Sbjct: 120 AMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMIS 179

Query: 164 CYTQASFHLEALKLYERMRFEDV--------GL------------------------DGF 191
            Y Q+   L+A++L+++M  +++        GL                        D F
Sbjct: 180 GYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPF 239

Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
            L  ++ + A++  L +G  +H +   +G+  S++V NALVDMYAKC ++ +A  +F RM
Sbjct: 240 ILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRM 299

Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
            +RD++SW S+IVG   HG  +EA+S + +ML  G  P+ +TF+GL+  CSH GLV +G 
Sbjct: 300 VQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGR 359

Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKI 370
            +F+ M+  Y + P ++HY CL+DL  R+G LE+A  +I       D   W  LL +C  
Sbjct: 360 YFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNH 419

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS 430
           HRN  IG     +L+ L+      Y+LL+ IYA     E V++ R+L+ +  +K  PG+S
Sbjct: 420 HRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYS 479

Query: 431 WIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEK 490
            I +G +   F+  + SHP  + I+  LEE+    K  GY  D S V       E   E+
Sbjct: 480 CIVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEK--ER 537

Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYH 538
              +HSE+LA+A+GL     G  L IVKNLR            SI   R+++VRD  RYH
Sbjct: 538 QLFWHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYH 597

Query: 539 HFRDGLCSCGDYW 551
           HF+DG CSC ++W
Sbjct: 598 HFKDGKCSCNNFW 610



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 108/193 (55%), Gaps = 3/193 (1%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
             + L+AC R ++    ++LH  +I++G ++C  +S NL+  Y   G+I+ A ++F+ +P
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMG 209
            RD +SW SI++   QA+     L ++  M F+  GL  D +   CL+ +CA +GA+  G
Sbjct: 66  HRDPISWASILTANNQANLPHLTLSMFPAM-FKQDGLQPDHYVFACLVKACAILGAMKQG 124

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H         +   V ++LVDMYAKCG  D    VF  +  ++ +SW +MI GY   
Sbjct: 125 KQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQS 184

Query: 270 GRGDEAISFFKQM 282
           GR  +AI  F++M
Sbjct: 185 GRKLDAIQLFQKM 197



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 119/263 (45%), Gaps = 15/263 (5%)

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
           LV  L +CA   +  +G  LH    + G  +   + N L++MY KCG +  A  +F+++ 
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGV 311
            RD +SW S++            +S F  M    G  PD   F  L+  C+  G +++G 
Sbjct: 66  HRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGK 125

Query: 312 E-YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCK 369
           + +   +VS  +    +K    LVD+Y + G  +    V ++ S  + + W  ++ G  +
Sbjct: 126 QVHATFIVSPVSDDDVVK--SSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQ 183

Query: 370 IHRNVE----IGEIAMKNLVQLEA-----ASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
             R ++      ++ +KNL+   A       +G++V    ++   +  +G+      I S
Sbjct: 184 SGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMR-SKGIDIVDPFILS 242

Query: 421 NGIKTTPGWSWIEIGNQVHKFVV 443
           + I  +   + + +G Q+H  V+
Sbjct: 243 SIIGASANLAVLGLGKQIHCLVI 265



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F ++      +W S+I   AQ     +A+  YN ML   L +P+  TF   + AC 
Sbjct: 292 AKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGL-KPNEVTFVGLIYACS 350

Query: 101 RVKALNKCQELHGFVIRS-GYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-ERDLVSW 158
            V  ++K +     +I+  G    +   T L+   + +G +E A ++   MP + D  +W
Sbjct: 351 HVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATW 410

Query: 159 NSIIS 163
            +++S
Sbjct: 411 AALLS 415


>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 551

 Score =  333 bits (855), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 187/490 (38%), Positives = 283/490 (57%), Gaps = 9/490 (1%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAW-NSLIRAFAQSLS-PLQAIFYYNHMLMASLSRPDTF 90
           +  + L+YA+ +F++I  P    W N+L+R +A+S     +A      ML   ++ PDT+
Sbjct: 66  AAPAHLAYARQVFDRIPTPGDVVWYNTLLRGYARSSDGAAEAARVLARMLEEGVA-PDTY 124

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           TF   LKAC   +A  + ++ HG  +++G      V   L+  YA  G   +AR++F  +
Sbjct: 125 TFVSLLKACAAARAGEEGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAMFGRV 184

Query: 151 PERD-LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           P  D +VS+N++I+   ++S   EAL L+  M+ + +     T+  +LS+CA +GAL +G
Sbjct: 185 PNGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELG 244

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
            ++H    + G    V V  AL+DMY KCG+L+ A  VF  M  RD  +W+ MIV Y  H
Sbjct: 245 RWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMESRDRQAWSVMIVAYANH 304

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
             G EAIS F++M   G  PD++TFLG+L  CSH G+V EG++YF  M   Y + PGIKH
Sbjct: 305 SYGREAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVPGIKH 363

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
           YGC+ DL  R+G+LEKA + I+   P  P  +LWRTLL +C  H  V++G+   + +++L
Sbjct: 364 YGCVTDLLARSGQLEKAYKFID-ELPIQPTAILWRTLLSACGSHGAVDLGKRVFERILEL 422

Query: 388 EAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKS 447
           +     DYV+ + + A T   E + R RKL+   G+   PG S IEI N+VH+F   D  
Sbjct: 423 DDTHGSDYVIFSNLCANTGKWEEMNRVRKLMNEKGVVKVPGCSSIEIDNRVHEFFAGDGR 482

Query: 448 HPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLAT 507
           HP +    R +++++ + K +GY  + S V       E+    S  YHSEKLAI+FGL  
Sbjct: 483 HPQSQDARRMVDQVIEQLKLVGYVPNTSQV-FHVEMGEEEKATSLRYHSEKLAISFGLLN 541

Query: 508 TPDGTSLRIV 517
           T  GT+LR+V
Sbjct: 542 TSPGTTLRVV 551


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 194/530 (36%), Positives = 288/530 (54%), Gaps = 22/530 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+  F++        W ++I A+A +    +A+     M +  + +    T+   L AC 
Sbjct: 187 AERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGI-KLGLPTYVSLLDACA 245

Query: 101 RVKALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
               L      H      G +R   VV+  L+  Y   G ++ AR V D MP R  VSW 
Sbjct: 246 STMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWT 305

Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH-RIACE 218
           ++I+ Y Q     EA+ L++ M  E       TL+ ++ SCA +G L++G  +H RI   
Sbjct: 306 AMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSS 365

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHGRGDEAI 276
             F +S+ + NA++ MY KCGNL+ A  VF    +R R V++W +MI  Y  +G G+EAI
Sbjct: 366 PSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEEAI 425

Query: 277 SFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
             F++ML+  G  P+ +TFL +LC CSH G +E+  E+F  M   + + P   HY CLVD
Sbjct: 426 ELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVD 485

Query: 336 LYGRAGKLEKALEVI--NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L GRAG+L +A +++  +    +D V W   L +C+++ ++E  + A K + +LE  +  
Sbjct: 486 LLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVA 545

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
             VLL+ +YA       VAR R  +KS+G+K   G SWIEI N+VH+F+V D SHP    
Sbjct: 546 GRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLE 605

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           IY +LE +    K  GY  D  +V       E+   +   YHSE+LA+A G+ +TP GT+
Sbjct: 606 IYSELERLHREIKEAGYVPDTKMVL--RDVDEEKKVQLLGYHSERLAMALGIISTPPGTT 663

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR+VKNLR            S    R +IVRD  R+HHF+DG+CSCGDYW
Sbjct: 664 LRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 713



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 155/328 (47%), Gaps = 4/328 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+++Y  S   SL  AQL F +I      +WN L+ A+AQ+  P  A   + H + +
Sbjct: 70  GNVLVDAY--SKHGSLHGAQLAFGRITLHNAHSWNILMAAYAQNGHPRGAATLF-HWMCS 126

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
              RP+  T +  L AC   + L   ++L+  +     E    V ++L+  Y     IE 
Sbjct: 127 QGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALEIDSHVESSLITMYGRCREIEE 186

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A   FD  PE+D+V W ++IS Y        AL+L  RM  E + L   T V LL +CA 
Sbjct: 187 AERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDACAS 246

Query: 203 VGALNMGIFLHRIACEMGF-VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
              L  G+  H+ A  +G    S  V   LV++Y KCG +D A  V   M  R  +SW +
Sbjct: 247 TMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTA 306

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI  Y  +G   EAI+ F+ M + G  P  IT + ++  C+  G +  G      + S  
Sbjct: 307 MIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSP 366

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           +    +     ++ +YG+ G LE A EV
Sbjct: 367 SFSQSLMLLNAVITMYGKCGNLELAREV 394



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 135/303 (44%), Gaps = 3/303 (0%)

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
           + L++ ++LH  +     +R   +   L+  Y+ +G +  A+  F  +   +  SWN ++
Sbjct: 46  RGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNILM 105

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           + Y Q      A  L+  M  + V  +  TL   L +C     L +G  L+ +       
Sbjct: 106 AAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALE 165

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
              +V ++L+ MY +C  ++ A   F R  ++DV+ W +MI  Y  + R   A+   ++M
Sbjct: 166 IDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRM 225

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL-KPGIKHYGCLVDLYGRAG 341
            + G      T++ LL  C+    +  GV  FH   +   L +      G LV+LYG+ G
Sbjct: 226 DLEGIKLGLPTYVSLLDACASTMDLRNGVA-FHQRAAAIGLDRSSTVVAGTLVNLYGKCG 284

Query: 342 KLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           +++ A  V++       V W  ++ +   + N     I +   + LE A   D  L++ +
Sbjct: 285 RVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEA-INLFQCMDLEGAEPSDITLISVV 343

Query: 402 YAC 404
            +C
Sbjct: 344 DSC 346


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 187/532 (35%), Positives = 294/532 (55%), Gaps = 33/532 (6%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS--LSPLQAIFYYNHMLMASLSRPDTFTF 92
           +  L  A+ LF ++      +WN+++  +AQ+  +   + IFY        +   +  ++
Sbjct: 39  NRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFY-------KMPLKNGISW 91

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
              L A  +   +   + L  F  +  +    +VS N + G    G +   R++FDNMP+
Sbjct: 92  NGLLAAYVQNGRIEDAKRL--FESKMDW---TLVSWNCLMG----GFVRKRRNLFDNMPQ 142

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           RD +SW+++I+ Y+Q     EAL  +  M+ +   L+  +  C LS+C+++ AL +G  L
Sbjct: 143 RDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQL 202

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
           H    + G+    YVGNAL+ MY KCG++D A   F  + ++DV+SWN+MI GY  HG G
Sbjct: 203 HCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFG 262

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           +EA++ F+ M   G  PD  T + +L  CSH GLV++G EYF+ M   Y +   + HY C
Sbjct: 263 EEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTC 322

Query: 333 LVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           +VDL GRAG+LE+A  ++ N     D   W  LLG+ +IH N E+GE A + + ++E  +
Sbjct: 323 MVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHN 382

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
           +G Y+LL+ +YA +       + R  +++ G+K  PG+SW+E+ N++H F V D SHP  
Sbjct: 383 SGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHT 442

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
           D IY  LEE+  + K  GY    +LV       E        YHSEKLA+A+G+   P G
Sbjct: 443 DKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKV--HMLKYHSEKLAVAYGILYIPAG 500

Query: 512 TSLRIVKNLR-------SIAY-----SRDLIVRDRVRYHHFRDGLCSCGDYW 551
             +R++KNLR       +I Y      R +I+RD  R+H+F  G CSC D+W
Sbjct: 501 RPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 137/276 (49%), Gaps = 6/276 (2%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ 71
           +  A++  E   +W L S+   +   +   + LF+ +    + +W+++I  ++Q+    +
Sbjct: 104 IEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEE 163

Query: 72  AIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131
           A+ ++  M      R +  +FT  L  C  + AL   ++LH  ++++GY+    V   L+
Sbjct: 164 ALHFFVEM-QRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALL 222

Query: 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191
             Y   G I+ AR  F  + E+D+VSWN++I  Y +  F  EAL ++E M+   +  D  
Sbjct: 223 AMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDA 282

Query: 192 TLVCLLSSCAHVGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
           T+V +L++C+H G ++ G  + + +  + G    +     +VD+  + G L+ A  +   
Sbjct: 283 TMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKN 342

Query: 251 MR-KRDVLSWNSMIVGYGVHGR---GDEAISFFKQM 282
           M  + D  +W +++    +HG    G++A     +M
Sbjct: 343 MPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEM 378



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 132/287 (45%), Gaps = 19/287 (6%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           ER +     ++ GY  N  ++ AR++F+ MPERD+VSWN+++S Y Q  F  EA +++ +
Sbjct: 23  ERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYK 82

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M  +    +G +   LL++    G +     L     +   V      N L+  + +   
Sbjct: 83  MPLK----NGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVS----WNCLMGGFVR--- 131

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
                 +F  M +RD +SW++MI GY  +G  +EA+ FF +M       +  +F   L  
Sbjct: 132 --KRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALST 189

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL 360
           CS+   +E G +  H  + +   + G      L+ +Y + G +++A +        D V 
Sbjct: 190 CSNIAALELGRQ-LHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVS 248

Query: 361 WRTLLGSCKIHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIYACT 405
           W T++     H     GE A+    L++       D  +++ + AC+
Sbjct: 249 WNTMIHGYARH---GFGEEALTVFELMKTTGIRPDDATMVSVLAACS 292


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 192/533 (36%), Positives = 304/533 (57%), Gaps = 32/533 (6%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+  F+ +      +WN+++  +AQ+    +A+  ++ M+ A +  PD  T+   + 
Sbjct: 210 LEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIE-PDETTWVTVIS 268

Query: 98  ACERVKALNKCQELHGFVIRSGYERCV----VVSTNLMRGYAANGVIEAARSVFDNMPER 153
           AC      + C  L   ++R+ +++ +     V T L+  YA  G +++AR +F+ MP R
Sbjct: 269 ACSSRG--DPC--LAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGR 324

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           ++V+WNS+I+ Y Q      A++L++ M   + +  D  T+V ++S+C H+GAL +G ++
Sbjct: 325 NVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWV 384

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
            R   E     S+   NA++ MY++CG+++ A  VF  M  RDV+S+N++I G+  HG G
Sbjct: 385 VRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHG 444

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            EAI+    M   G  PD +TF+G+L  CSH GL+EEG + F  +       P I HY C
Sbjct: 445 VEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYAC 499

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           +VDL GR G+LE A   +    P +P   ++ +LL + +IH+ VE+GE+A   L +LE  
Sbjct: 500 MVDLLGRVGELEDAKRTME-RMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPD 558

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
           ++G+++LL+ IYA     + V R R+ +K  G+K T GWSW+E G ++HKF+V D+SH  
Sbjct: 559 NSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHER 618

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
           +D IY+ L E+  + +  GY  D+S V       E+  E+    HSEKLAI + L  +  
Sbjct: 619 SDDIYQLLIELRKKMREAGYIADKSCVL--RDVEEEEKEEIVGTHSEKLAICYALLVSEA 676

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G  +R+VKNLR            S    R +IVRD  R+H F DGLCSC DYW
Sbjct: 677 GAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 729



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/252 (35%), Positives = 137/252 (54%), Gaps = 2/252 (0%)

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
           ER V+  T ++ GYA    +EAAR  FD MPER +VSWN+++S Y Q     EAL+L++ 
Sbjct: 191 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDE 250

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
           M    +  D  T V ++S+C+  G   +   L R   +     + +V  AL+DMYAK G+
Sbjct: 251 MVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGD 310

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA-GFHPDSITFLGLLC 299
           LDSA  +F+ M  R+V++WNSMI GY  +G+   AI  FK+M+ A    PD +T + ++ 
Sbjct: 311 LDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVIS 370

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
            C H G +E G  +    ++   +K  I  +  ++ +Y R G +E A  V    +  D V
Sbjct: 371 ACGHLGALELG-NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVV 429

Query: 360 LWRTLLGSCKIH 371
            + TL+     H
Sbjct: 430 SYNTLISGFAAH 441



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 170/413 (41%), Gaps = 64/413 (15%)

Query: 7   ARYVGLNKARQAHEI--------HGEW--LLNSYAISVSSSLSYAQLLFNQIQNPQTQAW 56
           +R    N  RQ H          H  W  LL ++   + +   Y  LLFN   NP    +
Sbjct: 9   SRVGNFNHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVF 68

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
            S++R ++      + +  Y  M    + RPD F +   +K+     A       H  V+
Sbjct: 69  TSMLRFYSHLQDHAKVVLMYEQMQGCGV-RPDAFVYPILIKS-----AGTGGIGFHAHVL 122

Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEA 174
           + G+     V   ++  YA  G I  AR VFD +P  ER +  WN+++S Y +     +A
Sbjct: 123 KLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQA 182

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
             L++ M   +                                       V    A+V  
Sbjct: 183 QWLFDVMPERN---------------------------------------VITWTAMVTG 203

Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           YAK  +L++A   F  M +R V+SWN+M+ GY  +G  +EA+  F +M+ AG  PD  T+
Sbjct: 204 YAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTW 263

Query: 295 LGLLCGCSHQG---LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
           + ++  CS +G   L    V   H    R  L   ++    L+D+Y + G L+ A ++ N
Sbjct: 264 VTVISACSSRGDPCLAASLVRTLHQ--KRIQLNCFVR--TALLDMYAKFGDLDSARKLFN 319

Query: 352 TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404
           T    + V W +++     +    +     K ++  +  +  +  +++ I AC
Sbjct: 320 TMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISAC 372


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 177/484 (36%), Positives = 287/484 (59%), Gaps = 6/484 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQ +F++I      +WN++I  +A++ +  +A+  +  M+  ++ RPD  T    + AC 
Sbjct: 176 AQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV-RPDESTMVTVVSACA 234

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +  ++   +++H ++   G+   + +   L+  Y+  G +E A  +F+ +P +D++SWN+
Sbjct: 235 QSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNT 294

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE-- 218
           +I  YT  + + EAL L++ M       +  T++ +L +CAH+GA+++G ++H    +  
Sbjct: 295 LIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 354

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
            G   +  +  +L+DMYAKCG++++A  VF+ +  + + SWN+MI G+ +HGR D +   
Sbjct: 355 KGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDI 414

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F +M   G  PD ITF+GLL  CSH G+++ G   F  M   Y + P ++HYGC++DL G
Sbjct: 415 FSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLG 474

Query: 339 RAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
            +G  ++A E+INT     D V+W +LL +CK+H NVE+GE   +NL+++E  + G YVL
Sbjct: 475 HSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVL 534

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           L+ IYA       VA TR L+   G+K  PG S IEI + VH+F++ DK HP    IY  
Sbjct: 535 LSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 594

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           LEE+    +  G+  D S   V     E++ E +  +HSEKLAIAFGL +T  GT L IV
Sbjct: 595 LEEMEVLLEEAGFVPDTS--EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 652

Query: 518 KNLR 521
           KNLR
Sbjct: 653 KNLR 656



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 199/369 (53%), Gaps = 39/369 (10%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L YA  +F  IQ P    WN++ R  A S  P+ A+  Y  M+   L  P+++TF F LK
Sbjct: 41  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGL-LPNSYTFPFLLK 99

Query: 98  ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
           +C + KA  + Q++HG V++ G +                               R VV 
Sbjct: 100 SCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVS 159

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
            T L++GYA+ G IE A+ +FD +P +D+VSWN++IS Y +   + EAL+L++ M   +V
Sbjct: 160 YTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV 219

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T+V ++S+CA  G++ +G  +H    + GF  ++ + NAL+D+Y+KCG L++A  
Sbjct: 220 RPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACG 279

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F  +  +DV+SWN++I GY       EA+  F++ML +G  P+ +T L +L  C+H G 
Sbjct: 280 LFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 339

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYG----CLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
           ++ G  + H+ + +  LK G+ +       L+D+Y + G +E A +V N+        W 
Sbjct: 340 IDIG-RWIHVYIDK-RLK-GVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 396

Query: 363 TLLGSCKIH 371
            ++    +H
Sbjct: 397 AMIFGFAMH 405


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 181/531 (34%), Positives = 290/531 (54%), Gaps = 18/531 (3%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           +  L  A+ LF+++       WN+++     S    +++ ++  M    + +PD +    
Sbjct: 13  NGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGM-QPDEYGLGS 71

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
             + C  ++ +   +++H +V+RSG +R + V ++L   Y   G +    +    +P  +
Sbjct: 72  LFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLN 131

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +VS N+ IS  TQ      AL+ +  MR   V  +  T V  ++SC+ + AL  G  +H 
Sbjct: 132 IVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHA 191

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
           +A + G  + V V  +LV MY++CG L  +  V       D++  ++MI  YG HG G +
Sbjct: 192 LAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQK 251

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  FKQM+ AG  P+ +TFL LL  CSH GL +EG+  F +M   Y L+P +KHY C+V
Sbjct: 252 AVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIV 311

Query: 335 DLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           DL GR+G L +A ++I  S P  P  V+W+TLL +CK  +  ++ E   + +++L+   +
Sbjct: 312 DLLGRSGCLNEAEDLI-LSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDS 370

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
             YVLL+ I A +   E V++ R+ ++   ++  PG SW+E+  Q+H+F   D+SH    
Sbjct: 371 ASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQR 430

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            I   LEE+M R +  GY  D S+V       E   E S A+HSEKLAIAF   + P+G 
Sbjct: 431 EIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEK--EVSLAHHSEKLAIAFAFLSLPEGV 488

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +R++KNLR            S    R+++VRD  R+HHF+DG CSCGDYW
Sbjct: 489 PIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 143/302 (47%), Gaps = 9/302 (2%)

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           L+ GY  NG +E AR +FD MP R++ +WN++++  T +  + E+L  +  MR E +  D
Sbjct: 6   LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 65

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
            + L  L   CA +  +  G  +H      G    + VG++L  MY +CG L        
Sbjct: 66  EYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALR 125

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            +   +++S N+ I G   +G  + A+ FF  M  AG   +++TF+  +  CS    + +
Sbjct: 126 ALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQ 185

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCK 369
           G +  H +  +  +   +     LV +Y R G L  +  V    S +D VL   ++ +  
Sbjct: 186 G-QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYG 244

Query: 370 IHRNVEIGEIAMKNLVQLEAASA--GDYVLLATIYACTKD---EEGVARTRKLIKSNGIK 424
            H +   G+ A+    Q+ AA A   +   L  +YAC+     +EG+     + K+ G++
Sbjct: 245 FHGH---GQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQ 301

Query: 425 TT 426
            +
Sbjct: 302 PS 303



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 7/144 (4%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N L+  Y K G+L++A  +F  M  R+V +WN+M+ G    G  +E++ FF  M   G  
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE---- 344
           PD      L   C+    V  G +  H  V R  L   +     L  +Y R G L     
Sbjct: 64  PDEYGLGSLFRCCAGLRDVVSGRQ-VHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEA 122

Query: 345 --KALEVINTSSPSDPVLWRTLLG 366
             +AL  +N  S +  +  RT  G
Sbjct: 123 ALRALPSLNIVSCNTTISGRTQNG 146


>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 193/557 (34%), Positives = 292/557 (52%), Gaps = 22/557 (3%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ 71
           L     +H +    LL  YA      LS    L +   +P   AW+SLI +FAQ+  P  
Sbjct: 47  LPAVASSHALLAHHLLTFYARCSLPELSLRAFL-DLPASPSPAAWSSLISSFAQNGLPAA 105

Query: 72  AIFYYNHMLMASLSRPD---TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVST 128
           A   +  ML A +   D            A +  +       LHG   ++ +   V V +
Sbjct: 106 AFDAFRRMLAAGVPATDRSIPPAAKAVAAAADSSRPPLAPHALHGLASKTPFAGDVFVGS 165

Query: 129 NLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188
            ++  YA  G +  AR VFD MPER++VSW+++I  Y  A  H  AL ++     E V +
Sbjct: 166 AVLDMYAKCGNLSDARRVFDEMPERNVVSWSALIGGYADAGMHPSALCIFRSALEEAVQV 225

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
           + FT+ C++  CA      +G  +H  + +     S +VG++LV +Y+KCG +D A+ VF
Sbjct: 226 NDFTVSCIVRVCAAATLFELGAQVHARSIKTALDASPFVGSSLVSLYSKCGLVDCAYRVF 285

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
           S   +R++  WN++++    HG    A   F +M  AGF P+ ITFL LL  CSH GLV+
Sbjct: 286 SAAPERNLGIWNAVLIASAQHGHTSTAFERFTKMQHAGFRPNFITFLCLLTACSHAGLVD 345

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLG 366
           EG  YF +M   Y ++P ++HY  +VDL GR G++ +AL++I  S P +P   +W  LL 
Sbjct: 346 EGKRYFSLM-KEYRIEPEVEHYAAMVDLLGRVGRITEALDLIE-SMPMEPPDSVWGALLM 403

Query: 367 SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTT 426
           +C++ ++ +   IA K L +  + S+G ++LL++ YA        A  RK ++  GI+  
Sbjct: 404 ACRMFKDADTAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHVDAALARKAMRDAGIRKE 463

Query: 427 PGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSED 486
            G SW+E   +VH FV + + HP ++ IY  LE++  +    GY  D S  AV      D
Sbjct: 464 TGLSWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVGEKMAVAGYVADTS--AVVKDVDRD 521

Query: 487 FLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDR 534
               S  YHSE+LAIA GL   P+G  +R++KNLR            S    R +++RD 
Sbjct: 522 EKCASLGYHSERLAIALGLLIVPEGVPIRVMKNLRVCDDCHNAVKYLSKCTGRVVVLRDN 581

Query: 535 VRYHHFRDGLCSCGDYW 551
            R+H F DGLCSCGD+W
Sbjct: 582 RRFHRFEDGLCSCGDFW 598



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 130/291 (44%), Gaps = 11/291 (3%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCV-----VVSTNLMRGYAANGVIEAARS 145
           T    L A    +AL K Q+LHG +++ G+   V     +++ +L+  YA   + E +  
Sbjct: 17  TLAELLVALSAARALPKGQQLHGHLLKGGHLPAVASSHALLAHHLLTFYARCSLPELSLR 76

Query: 146 VFDNMP-ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            F ++P      +W+S+IS + Q      A   + RM    V     ++     + A   
Sbjct: 77  AFLDLPASPSPAAWSSLISSFAQNGLPAAAFDAFRRMLAAGVPATDRSIPPAAKAVAAAA 136

Query: 205 ALNMGIF----LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
             +        LH +A +  F   V+VG+A++DMYAKCGNL  A  VF  M +R+V+SW+
Sbjct: 137 DSSRPPLAPHALHGLASKTPFAGDVFVGSAVLDMYAKCGNLSDARRVFDEMPERNVVSWS 196

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           ++I GY   G    A+  F+  L      +  T   ++  C+   L E G +  H    +
Sbjct: 197 ALIGGYADAGMHPSALCIFRSALEEAVQVNDFTVSCIVRVCAAATLFELGAQ-VHARSIK 255

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
             L         LV LY + G ++ A  V + +   +  +W  +L +   H
Sbjct: 256 TALDASPFVGSSLVSLYSKCGLVDCAYRVFSAAPERNLGIWNAVLIASAQH 306


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/523 (36%), Positives = 291/523 (55%), Gaps = 23/523 (4%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+++ +    +W+++I A  Q     +    +  ML +  SRP        L A   V+
Sbjct: 67  VFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQML-SEGSRPSRGAI---LNAMACVR 122

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           +  +  +++  V+ +G +    V +     +A  G +E AR +FD +  +DLV+W + I 
Sbjct: 123 SHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIE 182

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y +A   LEAL L ++M  + +  D  TL+ ++ +C+ + +  +   +H I     F  
Sbjct: 183 AYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYN 242

Query: 224 SVY-VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
            +  V  AL+D+Y KCG+L  A  VF  M++R++++W++MI GYG+HG G EA++ F QM
Sbjct: 243 QLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQM 302

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
             A   PD ITF+ +L  CSH GLV EG E F+ M   + + P  +HY C+VD+ GRAGK
Sbjct: 303 -KASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGK 361

Query: 343 LEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
           L++A + I    P  P   +W  LLG+C+IH NV++ E+  + L  L+  +AG YV+L  
Sbjct: 362 LDEACDFIE-RMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYN 420

Query: 401 IYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE 460
           IY  T   +     R L+K+ G+K   G+S IEI N+++ FV  D+SHP  D+IY +LE 
Sbjct: 421 IYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELER 480

Query: 461 IMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
           +M R +  GYT D + V       E+  E     HSEKLAI FGL     G+ +RI KNL
Sbjct: 481 LMDRIRQEGYTPDINFVL--HDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNL 538

Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R            S    R+++VRD  R+HHF++G CSC DYW
Sbjct: 539 RVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 153/331 (46%), Gaps = 27/331 (8%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +PD FTF F +KAC  ++       +H  V++ GY+  V +S +L+  Y      E +R 
Sbjct: 7   QPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQ 66

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD MP+++ VSW++II    Q     E   L+ +M  E       +   +L++ A V +
Sbjct: 67  VFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEG---SRPSRGAILNAMACVRS 123

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
                 ++R+  E G      V +A   M+A+CG ++ A  +F  +  +D+++W + I  
Sbjct: 124 HEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEA 183

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH----------QGLVEEGVEYFH 315
           Y       EA+   KQM++ G  PD+IT LG++  CS            G++  G  Y  
Sbjct: 184 YVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQ 243

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
           ++               L+DLY + G L  A +V +     + + W  ++    +H    
Sbjct: 244 LLAVE----------TALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMH---G 290

Query: 376 IGEIAMKNLVQLEAASAGDYVLLATIY-ACT 405
            G  A+    Q++A+   D++   +I  AC+
Sbjct: 291 WGREALNLFDQMKASVKPDHITFVSILSACS 321



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 7/233 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+ I +     W + I A+ ++  PL+A+     M++  +  PD  T    ++AC 
Sbjct: 162 ARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIF-PDAITLLGVIRACS 220

Query: 101 RVKALNKCQELHGFVIRSG--YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
            + +      +HG +I +G  Y + + V T L+  Y   G +  AR VFD M ER++++W
Sbjct: 221 TLASFQLAHIVHG-IITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITW 279

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIAC 217
           +++IS Y    +  EAL L+++M+   V  D  T V +LS+C+H G +  G    + +A 
Sbjct: 280 SAMISGYGMHGWGREALNLFDQMK-ASVKPDHITFVSILSACSHSGLVAEGWECFNSMAR 338

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR-DVLSWNSMIVGYGVH 269
           + G          +VD+  + G LD A     RM  R +   W +++    +H
Sbjct: 339 DFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIH 391



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 3/142 (2%)

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           ML  G  PD+ TF  ++  CS     E G+   H  V ++  +  +     L+ +YG+  
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIR-IHQDVVKFGYQSQVFISNSLITMYGKCD 59

Query: 342 KLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           K E + +V +     + V W  ++G+C      + G    + ++   +  +   +L A  
Sbjct: 60  KYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM- 118

Query: 402 YACTKDEEGVARTRKLIKSNGI 423
            AC +  E      +++  NG+
Sbjct: 119 -ACVRSHEEADDVYRVVVENGL 139


>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
 gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
          Length = 597

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 194/512 (37%), Positives = 292/512 (57%), Gaps = 15/512 (2%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQI-QNPQTQAWNSLI 60
           G + HAR + L      H +    LLN YA      L  AQ  F+++ Q P T +W +LI
Sbjct: 94  GAQLHARSLKLPSHSNPHVLTS--LLNLYA--RCGRLHDAQKAFDEMRQPPSTVSWTALI 149

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
            A+  +   L+AI        AS  RPD+FT    L AC RV  L   +E+     + G 
Sbjct: 150 TAYMDAGRGLEAIGVARSAF-ASGVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGI 208

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
              V V+T  +  Y   G ++ AR VFD M  +D+V+W +++  Y       EAL+L+  
Sbjct: 209 AGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFA 268

Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV---YVGNALVDMYAK 237
           M+ E +  D +T+   LS+C  +GAL++G    R+   + + E +    +G AL+DMYAK
Sbjct: 269 MQVEGMRPDCYTVAGALSACTRLGALDLG---RRVVGMLQWDEVLGNPVLGTALIDMYAK 325

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
           CG+   A+ VF +MR RD++ WN+MI+G G+ G    A +   QM  +G   +  TF+GL
Sbjct: 326 CGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGL 385

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPS 356
           LC C+H GLV++G  YF  M   Y+++P I+HYG +VDL  RAG L++A ++I +    +
Sbjct: 386 LCSCTHTGLVKDGRRYFRNMTQLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEA 445

Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
           + V+W  LLG CKIHRN ++ E  +K L+QLE  ++G+YV+L+ IY+ +   E  A+ R 
Sbjct: 446 NAVVWGALLGGCKIHRNADLAEHVLKQLIQLEPWNSGNYVVLSNIYSNSGRWEDAAKLRL 505

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
            +K+ G++  P  SW+E+  +VH+F V DKSHP +D IY KL+E+    K +GY     +
Sbjct: 506 EMKAKGVEKVPASSWVELDGKVHEFHVGDKSHPLSDQIYAKLDELGMEMKAMGYKPSTEV 565

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATT 508
           V     + E   E +  +HSEK+AIAF L TT
Sbjct: 566 VMFDIENEEK--EHTLVHHSEKIAIAFSLLTT 595



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 3/202 (1%)

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-RDVLSWNSMIV 264
           L  G  LH  + ++    + +V  +L+++YA+CG L  A   F  MR+    +SW ++I 
Sbjct: 91  LTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQKAFDEMRQPPSTVSWTALIT 150

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
            Y   GRG EAI   +    +G  PDS T + +L  C+    +  G E +     +  + 
Sbjct: 151 AYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVADLVTGEEVW-TAAEKEGIA 209

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384
             +      VDLY + G+++KA  V +     D V W  ++G    + +     + +   
Sbjct: 210 GNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREA-LELFFA 268

Query: 385 VQLEAASAGDYVLLATIYACTK 406
           +Q+E      Y +   + ACT+
Sbjct: 269 MQVEGMRPDCYTVAGALSACTR 290


>gi|125595828|gb|EAZ35608.1| hypothetical protein OsJ_19898 [Oryza sativa Japonica Group]
          Length = 602

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 182/431 (42%), Positives = 262/431 (60%), Gaps = 27/431 (6%)

Query: 144 RSVFDNMPE--RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG---LDGFTLVCLLS 198
           R VF+ MP   RDLVSWN++IS + Q    +EA++LY RMR  + G    D  TLV +LS
Sbjct: 176 RQVFEEMPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLS 235

Query: 199 SCAHVGALNMGIFLHRIACEM--GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           SCAH GA  +G+ + R   +   GF +++ + NAL++ +A+CG+L  A  +F  M +R V
Sbjct: 236 SCAHTGARRVGLDVERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSV 295

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           +SW ++I+GYG+HG+GD A+  F+ M+     PDS+  +GLL  CSH G+ +EG +YF  
Sbjct: 296 VSWTTLIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFST 355

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNV 374
           M   Y L+P ++HY C+VDL GRAG+L++A E+I  S P  +D  +W  LLG+CKIH+NV
Sbjct: 356 MERDYCLRPKLEHYTCMVDLLGRAGRLDEARELI-ASMPMAADGAVWGALLGACKIHKNV 414

Query: 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEI 434
           E+GE A + +V LE A+ G YVL+A IYA     +GVA+ R  ++  G++  PG S++E 
Sbjct: 415 EMGEEAFERVVSLEPANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEH 474

Query: 435 GNQVHKFVVDDKSHPDADMIYRKLEEI--MHRAKFIGYTKDESLVAVSGSSSEDFLEKSS 492
             +VH F+ DD SHP A  IY  + E+  M + K  G   D        + +E       
Sbjct: 475 KGKVHLFMADDHSHPQARRIYELVVELERMVKEKTGG---DVVEERAEKAVAEAAAVPLV 531

Query: 493 AYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHF 540
            +HSEKLA+AFGL  T  G+ + ++KNLR            S   +R  +VRD  R+H F
Sbjct: 532 GFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRF 591

Query: 541 RDGLCSCGDYW 551
            +G CSC DYW
Sbjct: 592 ENGACSCRDYW 602



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 124/300 (41%), Gaps = 41/300 (13%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLS--RPDTFTFTFTLKACERVKALNKCQELH 112
           +WN++I A AQ+   ++A+  Y  M         PD  T    L +C    A     ++ 
Sbjct: 191 SWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVE 250

Query: 113 GFVIRS--GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
            +V  +  G+   + +   L+  +A  G +  A+ +FD MPER +VSW ++I  Y     
Sbjct: 251 RYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQ 310

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
              A+ L+E M  E    D   +V LLS+C+H G  + G                     
Sbjct: 311 GDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEG--------------------- 349

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
                     ++  +C+  ++       +  M+   G  GR DEA      M MA    D
Sbjct: 350 ----RKYFSTMERDYCLRPKLEH-----YTCMVDLLGRAGRLDEARELIASMPMAA---D 397

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEKALEV 349
              +  LL  C     VE G E F  +VS   L+P  + +Y  + ++Y  AG+L+   +V
Sbjct: 398 GAVWGALLGACKIHKNVEMGEEAFERVVS---LEPANVGYYVLMANIYADAGQLDGVAKV 454


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/530 (35%), Positives = 274/530 (51%), Gaps = 25/530 (4%)

Query: 38   LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
            L  A+ +FN++ +    +W +++ A A++    +    +  M +  +  PD FT   TL 
Sbjct: 588  LEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVI-PDKFTLATTLD 646

Query: 98   ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
             C     L   + +H  V   G E  + V   L+  Y+  G    A S F+ M  RDLVS
Sbjct: 647  TCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVS 706

Query: 158  WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
            WN + + Y QA    EA+ L+ +M+ E V  D  T    L+       ++ G   H +A 
Sbjct: 707  WNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAA 766

Query: 218  EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            E G    V V   LV +YAKCG LD A  +F       V+  N++I     HG  +EA+ 
Sbjct: 767  ESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVK 826

Query: 278  FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
             F +M   G  PD  T + ++  C H G+VEEG   F  M   + + P ++HY C VDL 
Sbjct: 827  MFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLL 886

Query: 338  GRAGKLEKALEVINTSSPSDPVL-WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
            GRAG+LE A ++I      D  L W +LLG+CK+  + E+GE   + +++L+  ++  +V
Sbjct: 887  GRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHV 946

Query: 397  LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY- 455
            +L+ IY  T   +     RK +    +K  PG SW EIG QVH+FV  D+SHP  D IY 
Sbjct: 947  VLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYV 1006

Query: 456  --RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
               KLE +M RA   GY  D+ L        ++  EK+  YHSE++AIAFGL  TP  T+
Sbjct: 1007 VLDKLELLMRRA---GYEADKGL-----DVEDELKEKALGYHSERIAIAFGLIATPPETT 1058

Query: 514  LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            L+IVKNLR            S+   R++IVRD +R+HHF +G CSC D W
Sbjct: 1059 LKIVKNLRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 185/398 (46%), Gaps = 18/398 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQ--AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S+S A+L+F ++  P      WN ++ A+AQ+    +A      ML   +  PD  +FT 
Sbjct: 488 SISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGV-LPDALSFTS 546

Query: 95  TLKAC---ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
            L +C   +  + L  C      ++ SGY R   + T L+  +     +E ARSVF+ M 
Sbjct: 547 VLSSCYCSQEAQVLRMC------ILESGY-RSACLETALISMHGRCRELEQARSVFNEMD 599

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
             D+VSW +++S   +     E   L+ RM+ E V  D FTL   L +C     L +G  
Sbjct: 600 HGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKV 659

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H    E+G    + V NAL++MY+ CG+   A   F  M+ RD++SWN M   Y   G 
Sbjct: 660 IHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGL 719

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
             EA+  F+QM + G  PD +TF   L       LV +G + FH + +   L   +    
Sbjct: 720 AKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDG-KLFHALAAESGLDSDVSVAT 778

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
            LV LY + GKL++A+ +   +     VL   ++G+   H   E   + M   +Q E   
Sbjct: 779 GLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEA-VKMFWKMQQEGVR 837

Query: 392 AGDYVLLATIYACTKD---EEGVARTRKLIKSNGIKTT 426
                L++ I AC      EEG +    + +  GI  T
Sbjct: 838 PDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPT 875



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 176/372 (47%), Gaps = 14/372 (3%)

Query: 5   KHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFA 64
           KHA  +  N   + H   G  L+N Y      SL  A  +F++++     +W +LI A A
Sbjct: 45  KHAHELIANAGLEQHLFLGNCLINMYV--RCGSLEEAHAIFSKMEERNVVSWTALISANA 102

Query: 65  QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER-- 122
           Q  +  +A   +  ML+ S + P+++T    L AC   + L   + +H  +   G ER  
Sbjct: 103 QCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERAS 162

Query: 123 --CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA-SFHLEALKLYE 179
               +V   ++  YA  G +E A +VF  +PE+D+VSW ++   Y Q   F+ +AL+++ 
Sbjct: 163 TTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFR 222

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
            M  + +  +  T +  L +C    +L  G +LH +  E          NAL++MY KCG
Sbjct: 223 EMLLQPLAPNVITFITALGACT---SLRDGTWLHSLLHEASLGFDPLASNALINMYGKCG 279

Query: 240 NLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           + + A+ VF  M  R   D++SWN+MI      GR  +A++ F+++ + G  P+S+T + 
Sbjct: 280 DWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLIT 339

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSP 355
           +L   +  G+       FH  +        +     ++ +Y + G    A  V       
Sbjct: 340 ILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWK 399

Query: 356 SDPVLWRTLLGS 367
            D + W T+LG+
Sbjct: 400 CDVISWNTMLGA 411



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 179/368 (48%), Gaps = 18/368 (4%)

Query: 10  VGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS--L 67
           +GL +A     + G  ++N YA     SL  A  +F  I      +W ++  A+AQ    
Sbjct: 156 LGLERASTTATLVGNAMINMYA--KCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRF 213

Query: 68  SPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
            P  A+  +  ML+  L+ P+  TF   L AC    +L     LH  +  +      + S
Sbjct: 214 YP-DALRIFREMLLQPLA-PNVITFITALGAC---TSLRDGTWLHSLLHEASLGFDPLAS 268

Query: 128 TNLMRGYAANGVIEAARSVFDNMPER---DLVSWNSIISCYTQASFHLEALKLYERMRFE 184
             L+  Y   G  E A SVF  M  R   DLVSWN++IS   +A  H +A+ ++ R+R E
Sbjct: 269 NALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLE 328

Query: 185 DVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
            +  +  TL+ +L++ A  G         H    E G++  V +GNA++ MYAKCG   +
Sbjct: 329 GMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSA 388

Query: 244 AFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
           A+ VF R+R K DV+SWN+M+          + ++ F  ML+AG  P+ ++F+ +L  CS
Sbjct: 389 AWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACS 448

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPV 359
           +   ++ G +   ++++R            LV +YG+ G + +A E++    P      V
Sbjct: 449 NSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEA-ELVFKEMPLPSRSLV 507

Query: 360 LWRTLLGS 367
            W  +LG+
Sbjct: 508 TWNVMLGA 515



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 144/289 (49%), Gaps = 13/289 (4%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D   +T  L++C     L K +  H  +  +G E+ + +   L+  Y   G +E A ++F
Sbjct: 24  DLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIF 83

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGAL 206
             M ER++VSW ++IS   Q      A  L+  M  E     + +TLV +L++CA+   L
Sbjct: 84  SKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDL 143

Query: 207 NMGIFLHRIACEMGF----VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
            +G  +H +  E+G       +  VGNA+++MYAKCG+L+ A  VF  + ++DV+SW +M
Sbjct: 144 AIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAM 203

Query: 263 IVGYGVHGRG-DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
              Y    R   +A+  F++ML+    P+ ITF+  L  C+    + +G  + H ++   
Sbjct: 204 AGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGT-WLHSLLHEA 259

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGS 367
           +L         L+++YG+ G  E A  V    +     D V W  ++ +
Sbjct: 260 SLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISA 308



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL SC     L  G   H +    G  + +++GN L++MY +CG+L+ A  +FS+M +R+
Sbjct: 31  LLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERN 90

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           V+SW ++I      G    A + F+ ML+ +   P+S T + +L  C++   +  G    
Sbjct: 91  VVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIG-RSI 149

Query: 315 HMMVSRYNLKPGIKHY----GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI 370
           H M+    L+            ++++Y + G LE A+ V       D V W  + G+   
Sbjct: 150 HAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQ 209

Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
            R      + +   + L+  +      +  + ACT   +G 
Sbjct: 210 ERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRDGT 250


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 181/531 (34%), Positives = 290/531 (54%), Gaps = 18/531 (3%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           +  L  A+ LF+++       WN+++     S    +++ ++  M    + +PD +    
Sbjct: 121 NGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGM-QPDEYGLGS 179

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
             + C  ++ +   +++H +V+RSG +R + V ++L   Y   G +    +    +P  +
Sbjct: 180 LFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLN 239

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +VS N+ IS  TQ      AL+ +  MR   V  +  T V  ++SC+ + AL  G  +H 
Sbjct: 240 IVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHA 299

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
           +A + G  + V V  +LV MY++CG L  +  V       D++  ++MI  YG HG G +
Sbjct: 300 LAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQK 359

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  FKQM+ AG  P+ +TFL LL  CSH GL +EG+  F +M   Y L+P +KHY C+V
Sbjct: 360 AVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIV 419

Query: 335 DLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           DL GR+G L +A ++I  S P  P  V+W+TLL +CK  +  ++ E   + +++L+   +
Sbjct: 420 DLLGRSGCLNEAEDLI-LSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDS 478

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
             YVLL+ I A +   E V++ R+ ++   ++  PG SW+E+  Q+H+F   D+SH    
Sbjct: 479 ASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQR 538

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            I   LEE+M R +  GY  D S+V       E   E S A+HSEKLAIAF   + P+G 
Sbjct: 539 EIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEK--EVSLAHHSEKLAIAFAFLSLPEGV 596

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +R++KNLR            S    R+++VRD  R+HHF+DG CSCGDYW
Sbjct: 597 PIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 143/302 (47%), Gaps = 9/302 (2%)

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           L+ GY  NG +E AR +FD MP R++ +WN++++  T +  + E+L  +  MR E +  D
Sbjct: 114 LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 173

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
            + L  L   CA +  +  G  +H      G    + VG++L  MY +CG L        
Sbjct: 174 EYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALR 233

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            +   +++S N+ I G   +G  + A+ FF  M  AG   +++TF+  +  CS    + +
Sbjct: 234 ALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQ 293

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCK 369
           G +  H +  +  +   +     LV +Y R G L  +  V    S +D VL   ++ +  
Sbjct: 294 G-QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYG 352

Query: 370 IHRNVEIGEIAMKNLVQLEAASA--GDYVLLATIYACTKD---EEGVARTRKLIKSNGIK 424
            H +   G+ A+    Q+ AA A   +   L  +YAC+     +EG+     + K+ G++
Sbjct: 353 FHGH---GQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQ 409

Query: 425 TT 426
            +
Sbjct: 410 PS 411


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 192/486 (39%), Positives = 277/486 (56%), Gaps = 27/486 (5%)

Query: 87  PDTFTFTFTLKACERVKA-LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           PD   F  TL AC    A L   + +H  V+ +G E   VV+T L+  Y   G ++ A  
Sbjct: 8   PDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATR 67

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT-----LVCLLSSC 200
           VF  +  +DLVSW +++S Y++   + EAL+L+  M     GLDG          LL +C
Sbjct: 68  VFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLH--GLDGTKPDRSYFAFLLQAC 125

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYV-GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           A + A   G   HR   E G+  S  V G  +++MY KCGNL +A  VF  M +RD ++W
Sbjct: 126 ATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAW 185

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
            ++I GY  HG  +E++  F +M   G  PD ++ L +L  CSH GLVE+G ++F  +  
Sbjct: 186 TTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITK 245

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIG 377
            + ++PG KHYGC++DL GR+G LE A EV+    P  +  + W   L +CK+H + E G
Sbjct: 246 EFGVEPGEKHYGCMIDLLGRSGDLEAA-EVMIRRMPFQATAMNWAIFLAACKVHSDTERG 304

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
           + A + +++LE   A  YV L+ IYA   + + V R R  +K+ G++  PG S IE+ ++
Sbjct: 305 KRAAEKVLELEPVPAA-YVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEVNSR 363

Query: 438 VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSE 497
           VH+F   DKSHP A  IY  LE +  + +  GY  D  LV +  + SE+  E+   +HSE
Sbjct: 364 VHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLL--NVSEEQKERLLCFHSE 421

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLAIAFGL +TP G+SLRI+KNLR            S    R++ +RD  R+HHF+DG C
Sbjct: 422 KLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQDGHC 481

Query: 546 SCGDYW 551
           SCGDYW
Sbjct: 482 SCGDYW 487



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 7/249 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL- 84
           L+N Y    +  L  A  +F  ++     +W +L+ A+++     +A+  +  M +  L 
Sbjct: 52  LVNMYG--KAGCLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLD 109

Query: 85  -SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCV-VVSTNLMRGYAANGVIEA 142
            ++PD   F F L+AC  + A  + +  H  +   GY+    V+   ++  Y   G + A
Sbjct: 110 GTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRA 169

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VFD M ERD V+W +IIS Y       E+L ++ RM+ +    DG +L+C+LS C+H
Sbjct: 170 AHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSH 229

Query: 203 VGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWN 260
            G +  G  F   I  E G          ++D+  + G+L++A  +  RM  +   ++W 
Sbjct: 230 AGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWA 289

Query: 261 SMIVGYGVH 269
             +    VH
Sbjct: 290 IFLAACKVH 298


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 178/467 (38%), Positives = 271/467 (58%), Gaps = 39/467 (8%)

Query: 40  YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR----PDTFTFTFT 95
           YA LLF  + +P    +N++IRA+  +   + AI  Y  ML          PD FTF F 
Sbjct: 64  YANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFV 123

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           +K+C  +   +  +++HG V + G +   VV  +L+  Y     ++ A  VF+ M ERD 
Sbjct: 124 VKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDA 183

Query: 156 VSWNS-------------------------------IISCYTQASFHLEALKLYERMRFE 184
           VSWN+                               I+S Y +   + +AL+ + RM+  
Sbjct: 184 VSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMV 243

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
            +  D  +LV +L  CA +GAL +G ++H  A + GF+ ++ V NAL++MYAKCG++D  
Sbjct: 244 GIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQG 303

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
             +F +M++RDV+SW++MIVG   HGR  EAI  F++M  A   P  ITF+GLL  C+H 
Sbjct: 304 RRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHA 363

Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN--TSSPSDPVLWR 362
           GL+ EG+ YF  M   YN++PG++HYGCLV+L G +G+L++ALE++      P  P+ W 
Sbjct: 364 GLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPI-WG 422

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
           +LL SC+ H N++I  IAM++L++LE A  G+YVLL+ +YA     +GV+R RKL++S  
Sbjct: 423 SLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKS 482

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE-EIMHRAKFI 468
           +K TPG S IE+ N V +F   D S P +  I R L+  +MH++K I
Sbjct: 483 MKKTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLKLLVMHQSKII 529



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 18/199 (9%)

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
           L ALK+ E    ED+       V +L  C ++  L     +H    +    +S ++   +
Sbjct: 5   LRALKIRE---MEDM------FVPILKDCPNIVELKK---IHAHIVKFSLSQSSFLVTKM 52

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-----MAG 286
           VD+    G  + A  +F  +   +   +N+MI  Y  +     AI+ +KQML        
Sbjct: 53  VDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENP 112

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
             PD  TF  ++  C+     + G +  H  V ++  K        LV++Y +   L+ A
Sbjct: 113 IFPDKFTFPFVVKSCAGLMCYDLGKQ-VHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDA 171

Query: 347 LEVINTSSPSDPVLWRTLL 365
             V    +  D V W TL+
Sbjct: 172 HRVFEEMTERDAVSWNTLI 190


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 189/560 (33%), Positives = 299/560 (53%), Gaps = 53/560 (9%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +      +W SL   + +   P + +  +  M  + + +P+  T +  L AC 
Sbjct: 218 ARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGV-KPNPMTVSSILPACA 276

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +K L   +E+HGF +R G    + V + L+  YA    +  AR VFD MP RD+VSWN 
Sbjct: 277 ELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNG 336

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +++ Y +   + +   L+ +M  + V  D  T   ++  C   G     + + R   +MG
Sbjct: 337 VLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMG 396

Query: 221 F----------------VESVYVG-------------------NALVDMYAKCGNLDSAF 245
           F                 E++ +G                    AL+ MYAKCG+L+ + 
Sbjct: 397 FKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSR 456

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  MR++DV++WN+MI+   +HG G EA+  F +ML++   P+S+TF G+L GCSH  
Sbjct: 457 NVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSR 516

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRT 363
           LVEEGV+ F+ M   + ++P   HY C+VD+Y RAG+L +A + I    P +P    W  
Sbjct: 517 LVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQ-GMPMEPTASAWGA 575

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LL +C++++NVE+ +I+ K L ++E  + G+YV L  I    K     ++ R L+K  GI
Sbjct: 576 LLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGI 635

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
             TPG SW+++GN+VH FVV DKS+ ++D IY  L+E++ + K  GY  D   V      
Sbjct: 636 TKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQ 695

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-------SIAYSRD-----LIV 531
            E    +S   HSEKLA+AFG+      +++R+ KNLR       +I Y        ++V
Sbjct: 696 EEK--AESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVV 753

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RD +R+HHF++G CSC D W
Sbjct: 754 RDSLRFHHFKNGNCSCKDLW 773



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 163/368 (44%), Gaps = 37/368 (10%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+ I  P     ++LI A        +AI  Y+ +    + +PD   F    KAC 
Sbjct: 117 ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGI-KPDMPVFLAAAKACA 175

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
                 + +E+H    R G    V V   L+  Y     +E AR VFD++  RD+VSW S
Sbjct: 176 VSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTS 235

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           + SCY +  F  + + ++  M +  V  +  T+  +L +CA +  L  G  +H  A   G
Sbjct: 236 LSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHG 295

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY-------------- 266
            V +++V +ALV +YAKC ++  A  VF  M  RDV+SWN ++  Y              
Sbjct: 296 MVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFL 355

Query: 267 -----GV----------------HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
                GV                +GR +EA+  F++M   GF P+ IT   +L  CS   
Sbjct: 356 KMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSE 415

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +  G E  H  V R+     +     L+ +Y + G L  +  V +     D V W T++
Sbjct: 416 NLRMGKE-IHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMI 474

Query: 366 GSCKIHRN 373
            +  +H N
Sbjct: 475 IANAMHGN 482



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 15/326 (4%)

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           L+R     G    AR +FDN+P+ D  + +++IS  T      EA+K+Y  ++   +  D
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
               +    +CA  G       +H  A   G +  V+VGNAL+  Y KC  ++ A  VF 
Sbjct: 164 MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 223

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            +  RDV+SW S+   Y   G   + +  F++M  +G  P+ +T   +L  C+    ++ 
Sbjct: 224 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 283

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCK 369
           G E  H    R+ +   +     LV LY +   + +A  V +     D V W  +L +  
Sbjct: 284 GKE-IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 342

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKL----IKSNG 422
            ++  E G  ++   +  +   A +    A I  C ++   EE V   RK+     K N 
Sbjct: 343 KNKEYEKG-FSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNE 401

Query: 423 IKTT---PGWSWIE---IGNQVHKFV 442
           I  +   P  S+ E   +G ++H +V
Sbjct: 402 ITISSILPACSFSENLRMGKEIHCYV 427



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 2/145 (1%)

Query: 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
           ++G  L+ +    G+ + A  +F  + + D  + +++I     HG  +EAI  +  +   
Sbjct: 99  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 158

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
           G  PD   FL     C+  G     V+  H   +R  +   +     L+  YG+   +E 
Sbjct: 159 GIKPDMPVFLAAAKACAVSGDALR-VKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEG 217

Query: 346 ALEVINTSSPSDPVLWRTLLGSCKI 370
           A  V +     D V W T L SC +
Sbjct: 218 ARRVFDDLVVRDVVSW-TSLSSCYV 241



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 19/162 (11%)

Query: 30  YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
           Y  +    L+ ++ +F+ ++     AWN++I A A   +  +A+F ++ ML++ + +P++
Sbjct: 444 YMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRV-QPNS 502

Query: 90  FTFTFTLKAC-------ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            TFT  L  C       E V+  N     H     + +  CVV        Y+  G +  
Sbjct: 503 VTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVV------DIYSRAGRLNE 556

Query: 143 ARSVFDNMP-ERDLVSWNSII-SCYTQASFHL---EALKLYE 179
           A      MP E    +W +++ +C    +  L    A KL+E
Sbjct: 557 AYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFE 598


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/496 (36%), Positives = 280/496 (56%), Gaps = 19/496 (3%)

Query: 69  PLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVST 128
           PL  IFY  HML      P+ +TF   L +C  +  ++  +++H  +I++  +    V T
Sbjct: 500 PL-TIFY--HMLEEGFI-PNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCT 555

Query: 129 NLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188
            L+  YA    +E A   F+ +  RDL +W  II+ Y Q +   +AL  + +M+ E V  
Sbjct: 556 ALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKP 615

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
           + FTL   LS C+ + +L  G  LH +  + G V  ++VG+ALVDMYAKCG ++ A  +F
Sbjct: 616 NEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALF 675

Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
             + +RD ++WN++I GY  +G+G++A++ F+ ML  G  PD +TF G+L  CSHQGLVE
Sbjct: 676 EALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVE 735

Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGS 367
           EG E+F+ M   + + P + H  C+VD+ GR GK ++  + I     S + ++W T+LG+
Sbjct: 736 EGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGA 795

Query: 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTP 427
            K+H N+ +GE A   L +L+      Y+LL+ I+A     + V R R L+ S G+K  P
Sbjct: 796 SKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEP 855

Query: 428 GWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDF 487
           G SW+E   QVH FV  D SHP    I+ KL+E+      I Y      V  +   +E  
Sbjct: 856 GCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEK- 914

Query: 488 LEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRV 535
            +++  +HSE+LA+ F L +T     +RI KNLR            S   +++++VRD  
Sbjct: 915 -KENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVR 973

Query: 536 RYHHFRDGLCSCGDYW 551
           R+HHF++G CSC D+W
Sbjct: 974 RFHHFKNGACSCNDFW 989



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 180/387 (46%), Gaps = 8/387 (2%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F  I+ P    W++LI    Q     ++I  + H++    + P+ +T    L A     
Sbjct: 371 VFKTIKKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLGDTLPNQYTICSLLSAATNTG 429

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L   Q +H  V + G+E  V VS  L+  Y  NG +     ++++M +RDL+SWN+ +S
Sbjct: 430 NLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLS 489

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
                  +   L ++  M  E    + +T + +L SC+ +  ++ G  +H    +    +
Sbjct: 490 GLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDD 549

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           + +V  AL+DMYAKC  L+ A   F+R+  RD+ +W  +I  Y    +G++A+++F+QM 
Sbjct: 550 NNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQ 609

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  P+  T  G L GCS    +E G +  H MV +      +     LVD+Y + G +
Sbjct: 610 QEGVKPNEFTLAGCLSGCSSLASLEGG-QQLHSMVFKSGHVSDMFVGSALVDMYAKCGCM 668

Query: 344 EKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY- 402
           E+A  +       D + W T++  C   +N +  +      + L+   + D V    I  
Sbjct: 669 EEAEALFEALIRRDTIAWNTII--CGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILS 726

Query: 403 ACTKD---EEGVARTRKLIKSNGIKTT 426
           AC+     EEG      + +  GI  T
Sbjct: 727 ACSHQGLVEEGKEHFNSMYRDFGISPT 753



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 163/340 (47%), Gaps = 4/340 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA    S+  YA+L+  ++ +    +W +LI+          +I+ +  M    + 
Sbjct: 153 LVNVYAKCRYSA--YARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGI- 209

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P+ FT    LKAC    AL+  +++H    + G    + V + L+  YA  G IE A  
Sbjct: 210 MPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASK 269

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F  MPE++ V+WN +++ Y Q       LKL+  M   DV  + FTL  +L  CA+   
Sbjct: 270 MFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKN 329

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H +  + G+  + ++G  LVDMY+KCG    A  VF  ++K D++ W+++I  
Sbjct: 330 LKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITC 389

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
               G+ +E+I  F  M +    P+  T   LL   ++ G ++ G +  H  V +Y  + 
Sbjct: 390 LDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG-QSIHACVWKYGFET 448

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +     LV +Y + G +    ++  +    D + W   L
Sbjct: 449 DVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYL 488



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 172/385 (44%), Gaps = 9/385 (2%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA      L+    +    QN  T  WN L+  +AQ       +  +  M+  
Sbjct: 251 GSALVDLYAKCGEIELASKMFIGMPEQNDVT--WNVLLNGYAQRGDVTGVLKLFCSMMEL 308

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            + + + FT T  LK C   K L + Q +H  +I+ GYE    +   L+  Y+  G+   
Sbjct: 309 DV-KCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID 367

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VF  + + D+V W+++I+C  Q     E++KL+  MR  D   + +T+  LLS+  +
Sbjct: 368 AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATN 427

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
            G L  G  +H    + GF   V V NALV MY K G +     ++  M  RD++SWN+ 
Sbjct: 428 TGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAY 487

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           + G    G  D  ++ F  ML  GF P+  TF+ +L  CS    V  G +  H  + +  
Sbjct: 488 LSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQ-VHAHIIKNQ 546

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           L         L+D+Y +   LE A    N  S  D   W  ++ +   +     GE A+ 
Sbjct: 547 LDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITN---YAQTNQGEKALN 603

Query: 383 NLVQL--EAASAGDYVLLATIYACT 405
              Q+  E     ++ L   +  C+
Sbjct: 604 YFRQMQQEGVKPNEFTLAGCLSGCS 628



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 159/315 (50%), Gaps = 4/315 (1%)

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
           ++  L+ C   ++L   + +HG +++        +  +L+  YA       AR V   MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
           +RD+VSW ++I       F  +++ L++ M+ E +  + FTL   L +C+   AL++G  
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           +H  A ++G +  ++VG+ALVD+YAKCG ++ A  +F  M +++ ++WN ++ GY   G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
               +  F  M+      +  T   +L GC++   +++G +  H ++ +   + G +  G
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQG-QVIHSLIIKCGYE-GNEFIG 352

Query: 332 C-LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           C LVD+Y + G    A+ V  T    D V+W  L+ +C   +      I + +L++L   
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALI-TCLDQQGQSEESIKLFHLMRLGDT 411

Query: 391 SAGDYVLLATIYACT 405
               Y + + + A T
Sbjct: 412 LPNQYTICSLLSAAT 426


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 192/486 (39%), Positives = 277/486 (56%), Gaps = 27/486 (5%)

Query: 87  PDTFTFTFTLKACERVKA-LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           PD   F  TL AC    A L   + +H  V+ +G E   VV+T L+  Y   G ++ A  
Sbjct: 8   PDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATR 67

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT-----LVCLLSSC 200
           VF  +  +DLVSW +++S Y++   + EAL+L+  M     GLDG          LL +C
Sbjct: 68  VFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLH--GLDGTKPDRSYFAFLLQAC 125

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYV-GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           A + A   G   HR   E G+  S  V G  +++MY KCGNL +A  VF  M +RD ++W
Sbjct: 126 ATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAW 185

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
            ++I GY  HG  +E++  F +M   G  PD ++ L +L  CSH GLVE+G ++F  +  
Sbjct: 186 TTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITK 245

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIG 377
            + ++PG KHYGC++DL GR+G LE A EV+    P  +  + W   L +CK+H + E G
Sbjct: 246 EFGVEPGEKHYGCMIDLLGRSGDLEAA-EVMIRRMPFQATAMNWAIFLAACKVHSDTERG 304

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
           + A + +++LE   A  YV L+ IYA   + + V R R  +K+ G++  PG S IE+ ++
Sbjct: 305 KRAAEKVLELEPVPAA-YVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEVNSR 363

Query: 438 VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSE 497
           VH+F   DKSHP A  IY  LE +  + +  GY  D  LV +  + SE+  E+   +HSE
Sbjct: 364 VHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLL--NVSEEQKERLLCFHSE 421

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLAIAFGL +TP G+SLRI+KNLR            S    R++ +RD  R+HHF+DG C
Sbjct: 422 KLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQDGHC 481

Query: 546 SCGDYW 551
           SCGDYW
Sbjct: 482 SCGDYW 487



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 7/249 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL- 84
           L+N Y    +  L  A  +F  +      +W +L+ A+++     +A+  +  M +  L 
Sbjct: 52  LVNMYG--KAGCLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLD 109

Query: 85  -SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGVIEA 142
            ++PD   F F L+AC  + A  + +  H  +   GY+    V+   ++  Y   G + A
Sbjct: 110 GTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRA 169

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VFD M ERD V+W +IIS Y       E+L ++ RM+ +    DG +L+C+LS C+H
Sbjct: 170 AHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSH 229

Query: 203 VGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWN 260
            G +  G  F   I  E G          ++D+  + G+L++A  +  RM  +   ++W 
Sbjct: 230 AGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWA 289

Query: 261 SMIVGYGVH 269
             +    VH
Sbjct: 290 IFLAACKVH 298


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 295/528 (55%), Gaps = 30/528 (5%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQS--LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           A+ LF  +      +WN+++   ++S  +   +A+F     L   +    ++    +  A
Sbjct: 148 ARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVF-----LAMPVRNSVSWNAMVSGFA 202

Query: 99  CERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           C R   ++  +E      R+  E+   V+ T ++ GY   G +  A   F+ MP R+LVS
Sbjct: 203 CSR--DMSAAEEW----FRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVS 256

Query: 158 WNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           WN++++ Y + S   +AL+L+  M R  +V  +  TL  +L  C+++ AL  G  +H+  
Sbjct: 257 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 316

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            ++    ++ VG +LV MY KCG+L SA  +F  M  RDV++WN+MI GY  HG G EAI
Sbjct: 317 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAI 376

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           + F++M   G  P+ ITF+ +L  C H GL + G+  F  M   Y ++P + HY C+VDL
Sbjct: 377 NLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDL 436

Query: 337 YGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
             RAGKLE+A+++I +      P  + TLL +C++++N+E  E+A   L++ +  SAG Y
Sbjct: 437 LCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAY 496

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V LA IYA     + V+R R+ +K N +  TPG+SWIEI   +H+F  +D+ HP   +I+
Sbjct: 497 VQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIH 556

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
            KL ++  R K +GY  D  L  V     E    +    HSEKLAI+FGL +T  G +LR
Sbjct: 557 EKLGQLAERMKAMGYVPD--LDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLR 614

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           I KNLR            S    R++I+RD  R+HHFR G CSCGDYW
Sbjct: 615 IFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 134/336 (39%), Gaps = 50/336 (14%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ A+  F       T  +N L+  +A++L  L    +    L   +  PD  ++  TL 
Sbjct: 82  LTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARH----LFDRIPTPDAVSYN-TLL 136

Query: 98  ACERVKA-LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           +C       +  + L      S   R VV    ++ G + +G +E A++VF  MP R+ V
Sbjct: 137 SCHFASGDADGARRLFA----SMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSV 192

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN+++S                          GF     +S+              R A
Sbjct: 193 SWNAMVS--------------------------GFACSRDMSAAEE---------WFRNA 217

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            E G      +  A+V  Y   GN+  A   F  M  R+++SWN+++ GY  +   D+A+
Sbjct: 218 PEKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDAL 274

Query: 277 SFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
             F+ M+  A   P++ T   +L GCS+   +  G +  H    +  L   +     LV 
Sbjct: 275 RLFRTMVREANVQPNASTLSSVLLGCSNLSALGFG-KQIHQWCMKLPLSRNLTVGTSLVS 333

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +Y + G L  A ++       D V W  ++     H
Sbjct: 334 MYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQH 369


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 184/524 (35%), Positives = 287/524 (54%), Gaps = 20/524 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKACERV 102
           LF ++      +W S+I    Q     +A+  +  M+   +  +P + T+   + AC   
Sbjct: 141 LFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANA 200

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
            AL +  ++H  V + GY     +S  L+  YA    +E +  VF      ++V W +++
Sbjct: 201 SALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALV 260

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           + Y     H +ALK++  M  E V  +  +    L+SC  + AL+ G  +H  A ++G  
Sbjct: 261 TGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLE 320

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
             V+VGN+L+ MY +CGNL+    +F R+ K++++SWNS+IVG   HG G  A++FF QM
Sbjct: 321 TDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQM 380

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
           + +   PD ITF GLL  CSH G+ ++G   F       + +  + HY C+VD+ GR+GK
Sbjct: 381 VRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGK 440

Query: 343 LEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           LE+A E+I N    ++ ++W  LL +C +H  +E+ E A K ++ LE   +  YVLL+ +
Sbjct: 441 LEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNL 500

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           YA       V+R R+ +K  GI   PG SWI I    ++F+  D+SHP +D IY+KLE +
Sbjct: 501 YASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWL 560

Query: 462 MHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
             + K +GY  D+  +L  V     E  L    +YHSE+LAI FGL +T +G+++ ++KN
Sbjct: 561 GGKLKELGYVPDQRFALHDVEDEQKEVML----SYHSERLAIGFGLISTVEGSTITVMKN 616

Query: 520 LRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR                 R +IVRD  R+HHF DG CSCGDYW
Sbjct: 617 LRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 157/366 (42%), Gaps = 47/366 (12%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP--DTFTFTFTLKA 98
           A+ +F+++  P    +  +I  +A++       + ++H L      P  D  ++   +K 
Sbjct: 14  ARTVFDKVSFPDVYLYTMMITGYARN-------YRFDHALQLFYEMPVKDVVSWNSMIKG 66

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
           C     L   ++L         ER VV  T ++ G+   G IE A  +F  MP RD+ +W
Sbjct: 67  CFDCADLTMARKL----FDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAW 122

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDV--------GLD--------------------- 189
           NS+I  Y       + L+L++ M   +V        GLD                     
Sbjct: 123 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 182

Query: 190 ----GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
                 T  C++++CA+  AL  G+ +H    ++G+    Y+  AL+  YA C  ++ + 
Sbjct: 183 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 242

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF      +V+ W +++ GYG++ + ++A+  F +M+  G  P+  +F   L  C    
Sbjct: 243 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLE 302

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            ++ G E  H    +  L+  +     L+ +Y R G L   + +    S  + V W +++
Sbjct: 303 ALDWGRE-IHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVI 361

Query: 366 GSCKIH 371
             C  H
Sbjct: 362 VGCAQH 367



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L+   ++F +I      +WNS+I   AQ    + A+ ++N M+  S+  PD  TFT  L
Sbjct: 338 NLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMV-RSMVEPDEITFTGLL 396

Query: 97  KAC 99
            AC
Sbjct: 397 SAC 399


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 194/547 (35%), Positives = 294/547 (53%), Gaps = 28/547 (5%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ YA      +  A  +F  I +     W+ LI  +AQS    QA   +  M M 
Sbjct: 287 GGALLDMYA--KCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRM-MR 343

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
           S   P+ F+ +  L+AC  +  L   +++H   I+ GYE  + V   LM  YA    +E 
Sbjct: 344 SFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMEN 403

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           +  +F ++ + + VSWN+II  Y Q+ F  +AL ++  MR   +     T   +L +CA+
Sbjct: 404 SLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACAN 463

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
             ++   + +H +  +  F     V N+L+D YAKCG +  A  VF  + + DV+SWNS+
Sbjct: 464 TSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSI 523

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I  Y +HGR   A+  F +M  +    + +TF+ LL  C   GLV +G+  F+ M+  + 
Sbjct: 524 ISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHR 583

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIA 380
           +KP ++HY C+V L GRAG+L  AL+ I    S+PS P++WR LL SC +H+NV +G  A
Sbjct: 584 IKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPS-PMVWRALLSSCVVHKNVALGRYA 642

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            + ++ +E      YVLL+ +YA     + VA  RK +++ G+K   G SW+EI  +VH 
Sbjct: 643 AEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHA 702

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA----YHS 496
           F V    HPD  +I   LE +  +A   GY  D ++V        D  E+  A     HS
Sbjct: 703 FSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVL------HDVDEEEKARMLWVHS 756

Query: 497 EKLAIAFGLATTPDGTSLRIVKNLRSI------------AYSRDLIVRDRVRYHHFRDGL 544
           E+LA+A+GL+ TP G  +RI+KNLRS                R++IVRD  R+HHF +G+
Sbjct: 757 ERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGI 816

Query: 545 CSCGDYW 551
           CSCGDYW
Sbjct: 817 CSCGDYW 823



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 190/349 (54%), Gaps = 4/349 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+++Y  S+  ++ +A+ +F+ I       W +++  ++++  P  A+  ++ M M 
Sbjct: 186 GTALIDAY--SLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMT 243

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
              +P+ F  T  LKA   + +    + +HG  +++ Y+    V   L+  YA  G IE 
Sbjct: 244 GF-KPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIED 302

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A ++F+ +P  D++ W+ +IS Y Q+  + +A +++ RM    V  + F+L  +L +CA+
Sbjct: 303 AHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACAN 362

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +  L +G  +H +A ++G+   ++VGNAL+DMYAKC N++++  +FS ++  + +SWN++
Sbjct: 363 IAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTI 422

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           IVGY   G  ++A+S F +M  A      +TF  +L  C++   ++  V+  H ++ +  
Sbjct: 423 IVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQ-IHSLIEKST 481

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
                     L+D Y + G +  AL+V  +    D V W +++ +  +H
Sbjct: 482 FNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALH 530



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 173/373 (46%), Gaps = 13/373 (3%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           G   HAR V      Q        LLN YA      L+ A+ LF+ +      ++ +L++
Sbjct: 64  GRAVHARVVQRGGVAQLDTFCANVLLNFYA--KLGPLATARRLFDGMPERNRVSFVTLMQ 121

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRP----DTFTFTFTLKACERVKALNKCQELHGFVIR 117
            +A     L+  F     L   L R     + F  T  LK    + A      +H    +
Sbjct: 122 GYA-----LRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACK 176

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177
            G++R   V T L+  Y+  G +  AR VFD +  +D V+W +++SCY++      AL  
Sbjct: 177 LGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNT 236

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK 237
           + +MR      + F L   L +   + +  +G  +H  + +  +    +VG AL+DMYAK
Sbjct: 237 FSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAK 296

Query: 238 CGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297
           CG+++ A  +F  +   DV+ W+ +I  Y    + ++A   F +M+ +   P+  +  G+
Sbjct: 297 CGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGV 356

Query: 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
           L  C++   +E G E  H +  +   +  +     L+D+Y +   +E +LE+ ++   ++
Sbjct: 357 LQACANIAFLELG-EQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDAN 415

Query: 358 PVLWRTLL-GSCK 369
            V W T++ G C+
Sbjct: 416 EVSWNTIIVGYCQ 428


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 194/543 (35%), Positives = 296/543 (54%), Gaps = 21/543 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  +LN YA      +  A  +F+++       W ++I   AQ+    +A+  Y  M   
Sbjct: 143 GAAVLNLYA--KCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKK 200

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +   D       ++AC  +        +HG++IR      V+V T+L+  YA NG +E 
Sbjct: 201 RV-EGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLEL 259

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VF  M  ++++SW+++IS + Q  F   AL+L   M+      D  +LV +L +C+ 
Sbjct: 260 ASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQ 319

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           VG L +G  +H         + V    A++DMY+KCG+L  A  VF ++  RD +SWN++
Sbjct: 320 VGFLKLGKSVHGYIVRRLHFDCVS-STAVIDMYSKCGSLSFARTVFDQISFRDSISWNAI 378

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I  YG+HG G+EA+S F QM      PD  TF  LL   SH GLVE+G  +F +MV+ Y 
Sbjct: 379 IASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYK 438

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIA 380
           ++P  KHY C+VDL  RAG++E+A E+I  S  ++P   +W  LL  C  H    IGE+A
Sbjct: 439 IQPSEKHYACMVDLLSRAGRVEEAQELIE-SMITEPGIAIWVALLSGCLNHGKFLIGEMA 497

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            K +++L     G Y L++  +A  +  + VA  RK++K  G+K  PG+S +E+  ++H 
Sbjct: 498 AKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHA 557

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           F+++DKSH   + I + L ++ +  K +GY      V    +  E+  E+    HSE+LA
Sbjct: 558 FLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVL--HNLEEEVKERMLCNHSERLA 615

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           IAFGL  T  GT L I KNLR            S   +R+++VRD  R+HHF+DG+CSCG
Sbjct: 616 IAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCG 675

Query: 549 DYW 551
           DYW
Sbjct: 676 DYW 678



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 190/382 (49%), Gaps = 19/382 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+ SYA      +  A+ +F++       AWN++I A+++  +  +A+  Y H + +   
Sbjct: 45  LIQSYA--RLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLY-HRMASEGV 101

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           RPD+ T+T  LKAC R   L   +E     +  GY   V V   ++  YA  G ++ A  
Sbjct: 102 RPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMR 161

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD M  RDLV W ++I+   Q     EA+ +Y +M  + V  DG  ++ L+ +C  +G 
Sbjct: 162 VFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGH 221

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
             MG+ +H        +  V V  +LVDMYAK G+L+ A CVF RM  ++V+SW+++I G
Sbjct: 222 SKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISG 281

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           +  +G    A+     M   G+ PDS++ + +L  CS  G ++ G      +V R     
Sbjct: 282 FAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRL---- 337

Query: 326 GIKHYGC-----LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIA 380
              H+ C     ++D+Y + G L  A  V +  S  D + W  ++ S  IH +   GE A
Sbjct: 338 ---HFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGS---GEEA 391

Query: 381 MKNLVQL-EAASAGDYVLLATI 401
           +   +Q+ E     D+   A++
Sbjct: 392 LSLFLQMRETNVKPDHATFASL 413



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 132/256 (51%), Gaps = 1/256 (0%)

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           ++H  +I +G       +  L++ YA  G IE+AR VFD  P+  + +WN++I  Y++  
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
              EAL LY RM  E V  D  T   +L +C     L  G    R A + G+ + V+VG 
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGA 144

Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
           A++++YAKCG +D A  VF +M +RD++ W +MI G   +G+  EA+  ++QM       
Sbjct: 145 AVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEG 204

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           D +  LGL+  C+  G  + G+     M+ R ++   +     LVD+Y + G LE A  V
Sbjct: 205 DGVVMLGLIQACTTLGHSKMGLSIHGYMI-RKDIIMDVIVQTSLVDMYAKNGHLELASCV 263

Query: 350 INTSSPSDPVLWRTLL 365
                  + + W  L+
Sbjct: 264 FRRMLYKNVISWSALI 279


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 193/558 (34%), Positives = 281/558 (50%), Gaps = 51/558 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++ A+ +F ++       WN++I  + QS     A   +  M+   +   D FTFT  L 
Sbjct: 248 VNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPL-DEFTFTSVLS 306

Query: 98  ACERVKALNKCQELHGFVIRSGY----ERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
           AC         + +HG +IR       E  + V+  L+  Y+  G I  A+ +FD M  +
Sbjct: 307 ACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK 366

Query: 154 DLVSWNSI-------------------------------ISCYTQASFHLEALKLYERMR 182
           D+VSWN+I                               +S Y       +ALKL+ +MR
Sbjct: 367 DVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMR 426

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
            EDV    +T    +++C  +GAL  G  LH    + GF  S   GNAL+ MYAKCG ++
Sbjct: 427 AEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVN 486

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A  VF  M   D +SWN+MI   G HG G EA+  F QM+  G  PD I+FL +L  C+
Sbjct: 487 DARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACN 546

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLW 361
           H GLV+EG  YF  M   + + PG  HY  L+DL GR+G++ +A ++I T      P +W
Sbjct: 547 HAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIW 606

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
             +L  C+ + ++E G  A   L ++     G Y+LL+  Y+        AR RKL++  
Sbjct: 607 EAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDR 666

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
           G+K  PG SWIE+G+++H F+V D  HP+A  +Y+ LE I  R + +GY  D   V    
Sbjct: 667 GVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDM 726

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
              E   E     HSEKLA+ FGL   P G ++ ++KNLR            S A  R++
Sbjct: 727 EPHEK--EYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREI 784

Query: 530 IVRDRVRYHHFRDGLCSC 547
           +VRD  R+HHF+DG CSC
Sbjct: 785 VVRDVRRFHHFKDGECSC 802



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 161/328 (49%), Gaps = 45/328 (13%)

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK--ALNKCQELHGF 114
           N+++ AFA++     A+  ++ +L +   RPD ++FT  + A  ++   A   C +LH  
Sbjct: 129 NAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCS 188

Query: 115 VIRSGYERCVVVS----------------------------------TNLMRGYAANGVI 140
           V++SG    + VS                                  T ++ GY   G +
Sbjct: 189 VLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDV 248

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
            AARSVF+ +  +  V WN++IS Y Q+    +A +L+ RM  E V LD FT   +LS+C
Sbjct: 249 NAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSAC 308

Query: 201 AHVGALNMGIFLHR--IACEMGFVE--SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256
           A+ G    G  +H   I  +  FV   ++ V NALV +Y+K G +  A  +F  M  +DV
Sbjct: 309 ANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDV 368

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           +SWN+++ GY   G  D+A+  FK M     + + ++++ ++ G  H GL E+ ++ F+ 
Sbjct: 369 VSWNTILSGYIDSGCLDKAVEVFKVMP----YKNDLSWMVMVSGYVHGGLSEDALKLFNQ 424

Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
           M +  ++KP    Y   +   G  G L+
Sbjct: 425 MRAE-DVKPCDYTYAGAIAACGELGALK 451



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 106/238 (44%), Gaps = 3/238 (1%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  L  A  +F  +      +W  ++  +        A+  +N M  A   +P  +T+  
Sbjct: 381 SGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM-RAEDVKPCDYTYAG 439

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            + AC  + AL   ++LH  +++ G+E        L+  YA  G +  AR VF  MP  D
Sbjct: 440 AIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLD 499

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLH 213
            VSWN++IS   Q     EAL+L+++M  E +  D  + + +L++C H G ++ G  +  
Sbjct: 500 SVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFE 559

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSMIVGYGVHG 270
            +  + G          L+D+  + G +  A  +   M      S W +++ G   +G
Sbjct: 560 SMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNG 617



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 44/287 (15%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYTQASFHLEALKLYE 179
           R    +T+L+   AA G +  A + FD +P   RD V  N+++S + +AS    A+ ++ 
Sbjct: 90  RAPSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFH 149

Query: 180 RMRFE-DVGLDGFTLVCLLSSCA--HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
            +     +  D ++   L+S+    H  A      LH    + G    + V NAL+ +Y 
Sbjct: 150 ALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYM 209

Query: 237 KCGNLDSAF---CVFSRMRKRDVLSWNSMIVGY--------------GVHGRGD------ 273
           KC   ++++    V   M  +D L+W +M+VGY               V G+ D      
Sbjct: 210 KCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAM 269

Query: 274 -----------EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY- 321
                      +A   F++M+      D  TF  +L  C++ G    G +  H  + R  
Sbjct: 270 ISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHG-KSVHGQIIRLQ 328

Query: 322 -NLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            N  P   +     LV LY + GK+  A  + +T +  D V W T+L
Sbjct: 329 PNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTIL 375


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 295/528 (55%), Gaps = 30/528 (5%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQS--LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           A+ LF  +      +WN+++   ++S  +   +A+F     L   +    ++    +  A
Sbjct: 99  ARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVF-----LAMPVRNSVSWNAMVSGFA 153

Query: 99  CERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           C R   ++  +E      R+  E+   V+ T ++ GY   G +  A   F+ MP R+LVS
Sbjct: 154 CSR--DMSAAEEW----FRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVS 207

Query: 158 WNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           WN++++ Y + S   +AL+L+  M R  +V  +  TL  +L  C+++ AL  G  +H+  
Sbjct: 208 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 267

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            ++    ++ VG +LV MY KCG+L SA  +F  M  RDV++WN+MI GY  HG G EAI
Sbjct: 268 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAI 327

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
           + F++M   G  P+ ITF+ +L  C H GL + G+  F  M   Y ++P + HY C+VDL
Sbjct: 328 NLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDL 387

Query: 337 YGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
             RAGKLE+A+++I +      P  + TLL +C++++N+E  E+A   L++ +  SAG Y
Sbjct: 388 LCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAY 447

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V LA IYA     + V+R R+ +K N +  TPG+SWIEI   +H+F  +D+ HP   +I+
Sbjct: 448 VQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIH 507

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
            KL ++  R K +GY  D  L  V     E    +    HSEKLAI+FGL +T  G +LR
Sbjct: 508 EKLGQLAERMKAMGYVPD--LDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLR 565

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           I KNLR            S    R++I+RD  R+HHFR G CSCGDYW
Sbjct: 566 IFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 134/336 (39%), Gaps = 50/336 (14%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ A+  F       T  +N L+  +A++L  L    +    L   +  PD  ++  TL 
Sbjct: 33  LTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARH----LFDRIPTPDAVSYN-TLL 87

Query: 98  ACERVKA-LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           +C       +  + L      S   R VV    ++ G + +G +E A++VF  MP R+ V
Sbjct: 88  SCHFASGDADGARRLFA----SMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSV 143

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWN+++S                          GF     +S+              R A
Sbjct: 144 SWNAMVS--------------------------GFACSRDMSAAEE---------WFRNA 168

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            E G      +  A+V  Y   GN+  A   F  M  R+++SWN+++ GY  +   D+A+
Sbjct: 169 PEKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDAL 225

Query: 277 SFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
             F+ M+  A   P++ T   +L GCS+   +  G +  H    +  L   +     LV 
Sbjct: 226 RLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQ-IHQWCMKLPLSRNLTVGTSLVS 284

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +Y + G L  A ++       D V W  ++     H
Sbjct: 285 MYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQH 320


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 184/524 (35%), Positives = 287/524 (54%), Gaps = 20/524 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKACERV 102
           LF ++      +W S+I    Q     +A+  +  M+   +  +P + T+   + AC   
Sbjct: 157 LFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANA 216

Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
            AL +  ++H  V + GY     +S  L+  YA    +E +  VF      ++V W +++
Sbjct: 217 SALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALV 276

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
           + Y     H +ALK++  M  E V  +  +    L+SC  + AL+ G  +H  A ++G  
Sbjct: 277 TGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLE 336

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
             V+VGN+L+ MY +CGNL+    +F R+ K++++SWNS+IVG   HG G  A++FF QM
Sbjct: 337 TDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQM 396

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
           + +   PD ITF GLL  CSH G+ ++G   F       + +  + HY C+VD+ GR+GK
Sbjct: 397 VRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGK 456

Query: 343 LEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           LE+A E+I N    ++ ++W  LL +C +H  +E+ E A K ++ LE   +  YVLL+ +
Sbjct: 457 LEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNL 516

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           YA       V+R R+ +K  GI   PG SWI I    ++F+  D+SHP +D IY+KLE +
Sbjct: 517 YASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWL 576

Query: 462 MHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
             + K +GY  D+  +L  V     E  L    +YHSE+LAI FGL +T +G+++ ++KN
Sbjct: 577 GGKLKELGYVPDQRFALHDVEDEQKEVML----SYHSERLAIGFGLISTVEGSTITVMKN 632

Query: 520 LRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR                 R +IVRD  R+HHF DG CSCGDYW
Sbjct: 633 LRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 158/366 (43%), Gaps = 47/366 (12%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP--DTFTFTFTLKA 98
           A+ +F+++  P    +  +I  +A++       + ++H L      P  D  ++   +K 
Sbjct: 30  ARTVFDKVSFPDVYLYTMMITGYARN-------YRFDHALQLFYEMPVKDVVSWNSMIKG 82

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
           C     L   ++L   +     ER VV  T ++ G+   G IE A  +F  MP RD+ +W
Sbjct: 83  CFDCADLTMARKLFDEMP----ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAW 138

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDV--------GLD--------------------- 189
           NS+I  Y       + L+L++ M   +V        GLD                     
Sbjct: 139 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 198

Query: 190 ----GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
                 T  C++++CA+  AL  G+ +H    ++G+    Y+  AL+  YA C  ++ + 
Sbjct: 199 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 258

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF      +V+ W +++ GYG++ + ++A+  F +M+  G  P+  +F   L  C    
Sbjct: 259 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLE 318

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            ++ G E  H    +  L+  +     L+ +Y R G L   + +    S  + V W +++
Sbjct: 319 ALDWGRE-IHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVI 377

Query: 366 GSCKIH 371
             C  H
Sbjct: 378 VGCAQH 383



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +L+   ++F +I      +WNS+I   AQ    + A+ ++N M+  S+  PD  TFT  L
Sbjct: 354 NLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMV-RSMVEPDEITFTGLL 412

Query: 97  KAC 99
            AC
Sbjct: 413 SAC 415


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 195/558 (34%), Positives = 292/558 (52%), Gaps = 53/558 (9%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F++  N     +N+++  +         +   + ML     RPD  T   T+ AC 
Sbjct: 285 ARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKG-PRPDKVTMLSTIAACA 343

Query: 101 RVKALNKCQELHGFVIRSGYE-------------------------------RCVVVSTN 129
           ++  L+  +  H +V+R+G E                               + VV   +
Sbjct: 344 QLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNS 403

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           L+ G   +G +E A  +FD M ERDLVSWN++I    Q S   EA++L+  M+ + +  D
Sbjct: 404 LIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGD 463

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
             T+V + S+C ++GAL++  ++     +      + +G ALVDM+++CG+  SA  VF 
Sbjct: 464 RVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFK 523

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
           RM KRDV +W + I    + G  + AI  F +ML     PD + F+ LL  CSH G V++
Sbjct: 524 RMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQ 583

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGS 367
           G + F  M   + ++P I HYGC+VDL GRAG LE+A+++I  S P +P  V+W +LL +
Sbjct: 584 GRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQ-SMPIEPNDVVWGSLLAA 642

Query: 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTP 427
           C+ H+NVE+   A + L QL     G +VLL+ IYA       VAR R  +K  G++  P
Sbjct: 643 CRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVP 702

Query: 428 GWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDES--LVAVSGSSSE 485
           G S IE+   +H+F   D+SH +   I   LEEI  R    GY  D +  L+ V     E
Sbjct: 703 GSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKE 762

Query: 486 DFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRD 533
             L +    HSEKLA+A+GL TT  G  +R+VKNLR            S  Y+R++ VRD
Sbjct: 763 HLLSR----HSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRD 818

Query: 534 RVRYHHFRDGLCSCGDYW 551
             RYH F++G CSC DYW
Sbjct: 819 NNRYHFFKEGFCSCRDYW 836



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 174/341 (51%), Gaps = 4/341 (1%)

Query: 28  NSYAISVSSSLSYAQLLFNQIQNPQTQ--AWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           +S  I    SL YA+  F            +N LIR +A +    QAI  Y  ML+  + 
Sbjct: 68  SSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIV 127

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            PD +TF F L AC ++ AL++  ++HG V++ G E  + VS +L+  YA  G ++  R 
Sbjct: 128 -PDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRK 186

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD M ER++VSW S+I+ Y+      EA+ L+ +M    V  +  T+VC++S+CA +  
Sbjct: 187 LFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKD 246

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L +G  +     E+G   S  + NALVDMY KCG++ +A  +F     ++++ +N+++  
Sbjct: 247 LELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSN 306

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y  H    + +    +ML  G  PD +T L  +  C+  G +  G +  H  V R  L+ 
Sbjct: 307 YVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVG-KSSHAYVLRNGLEG 365

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
                  ++D+Y + GK E A +V         V W +L+ 
Sbjct: 366 WDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIA 406



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 170/393 (43%), Gaps = 34/393 (8%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LF+ +      +W SLI  ++      +A+  +  M  A +  P+  T    + AC ++K
Sbjct: 187 LFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGV-EPNPVTMVCVISACAKLK 245

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L   +++  ++   G E   ++   L+  Y   G I AAR +FD    ++LV +N+I+S
Sbjct: 246 DLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMS 305

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y    +  + L + + M  +    D  T++  +++CA +G L++G   H      G   
Sbjct: 306 NYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEG 365

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG----------- 272
              + NA++DMY KCG  ++A  VF  M  + V++WNS+I G    G             
Sbjct: 366 WDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEML 425

Query: 273 --------------------DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
                               +EAI  F++M   G   D +T +G+   C + G ++   +
Sbjct: 426 ERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLA-K 484

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372
           +    + + ++   ++    LVD++ R G    A+ V       D   W   +G   +  
Sbjct: 485 WVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEG 544

Query: 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           N E G I + N +  +     D V +A + AC+
Sbjct: 545 NTE-GAIELFNEMLEQKVKPDDVVFVALLTACS 576


>gi|15242443|ref|NP_198784.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171206|sp|Q9FK93.1|PP406_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39680; AltName: Full=Protein EMBRYO DEFECTIVE 2744
 gi|9758344|dbj|BAB08900.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007080|gb|AED94463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 173/477 (36%), Positives = 276/477 (57%), Gaps = 15/477 (3%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           +  T+  +L+    ++ LN   ++H  ++R G+   V     L+  Y   G +  A+ VF
Sbjct: 236 NNLTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVF 295

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D+   +++    +I+  Y Q     EAL L+ +M  ++V  + +T   LL+S A +  L 
Sbjct: 296 DDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLK 355

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
            G  LH +  + G+   V VGNALV+MYAK G+++ A   FS M  RD+++WN+MI G  
Sbjct: 356 QGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCS 415

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            HG G EA+  F +M+  G  P+ ITF+G+L  CSH G VE+G+ YF+ ++ +++++P I
Sbjct: 416 HHGLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDI 475

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           +HY C+V L  +AG  + A + + T+    D V WRTLL +C + RN  +G+   +  ++
Sbjct: 476 QHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIE 535

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
                +G YVLL+ I+A +++ EGVA+ R L+ + G+K  PG SWI I NQ H F+ +D 
Sbjct: 536 KYPNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDN 595

Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLA 506
            HP+  +IY K++E+M + K +GY+ D  +        E+  E + +YHSEKLA+A+GL 
Sbjct: 596 QHPEITLIYAKVKEVMSKIKPLGYSPD--VAGAFHDVDEEQREDNLSYHSEKLAVAYGLI 653

Query: 507 TTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            TP+ + L + KN+R            S    R +++RD  R+HHF DG CSC DYW
Sbjct: 654 KTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFLDGQCSCCDYW 710



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 169/373 (45%), Gaps = 6/373 (1%)

Query: 1   MGLKKHARYVGLNKARQAHEIHG-EWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSL 59
           +G   HA  +  N++ +A + +    L+N Y     +    A+ LF+ +      +W ++
Sbjct: 49  IGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETV--RARKLFDLMPERNVVSWCAM 106

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           ++ +  S    + +  +  M  +  SRP+ F  T   K+C     + + ++ HG  ++ G
Sbjct: 107 MKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYG 166

Query: 120 YERCVVVSTNLMRGYA-ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
                 V   L+  Y+  +G  EA R V D++P  DL  ++S +S Y +     E L + 
Sbjct: 167 LISHEFVRNTLVYMYSLCSGNGEAIR-VLDDLPYCDLSVFSSALSGYLECGAFKEGLDVL 225

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
            +   ED   +  T +  L   +++  LN+ + +H      GF   V    AL++MY KC
Sbjct: 226 RKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVEACGALINMYGKC 285

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G +  A  VF     +++    +++  Y      +EA++ F +M      P+  TF  LL
Sbjct: 286 GKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILL 345

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
              +   L+++G +  H +V +   +  +     LV++Y ++G +E A +  +  +  D 
Sbjct: 346 NSIAELSLLKQG-DLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDI 404

Query: 359 VLWRTLLGSCKIH 371
           V W T++  C  H
Sbjct: 405 VTWNTMISGCSHH 417


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 213/600 (35%), Positives = 310/600 (51%), Gaps = 83/600 (13%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           AIS+S +L YA+ L      P    +N+L+R +++S  P  ++  +  M+      PD+F
Sbjct: 40  AISISDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSF 99

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           +F F +KA E  ++L    ++H   ++ G E  + V T L+  Y   G +E AR VFD M
Sbjct: 100 SFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEM 159

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFE-----DVGLDGFTLVCLLSSC----- 200
            + +LV+WN++I+   + +    A +++++M        +V L G+     L S      
Sbjct: 160 HQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFS 219

Query: 201 -----------------AHVGALNMGIFLHR------------------IACEM------ 219
                            AH G+ N      R                   AC        
Sbjct: 220 EMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEF 279

Query: 220 -----GFVES------VYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYG 267
                GFVE       V V NAL+DMY++CGN+  A  VF  M+ KR ++SW SMI G  
Sbjct: 280 GKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLA 339

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           +HG+G+EA+  F +M   G  PD I+F+ LL  CSH GL+EEG +YF  M   Y+++P I
Sbjct: 340 MHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEI 399

Query: 328 KHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           +HYGC+VDLYGR+GKL+KA + I     P   ++WRTLLG+C  H N+E+ E   + L +
Sbjct: 400 EHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNE 459

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
           L+  ++GD VLL+  YA     + VA  RK +    IK T  WS +E+G  ++KF   +K
Sbjct: 460 LDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEK 519

Query: 447 SHPDADMIYRKLEEIMHRAK-FIGYTKD--ESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
                   + KL+EI+ R K   GYT +   +L  V     ED + K    HSEKLA+AF
Sbjct: 520 KKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSK----HSEKLALAF 575

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            LA    G ++RIVKNLR            S  Y  +++VRDR R+H F+DG CSC DYW
Sbjct: 576 ALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 4/252 (1%)

Query: 22  HGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81
           H  W +       +  L  A+ +F+++ +    +W+++I   A + S  ++  Y+  +  
Sbjct: 195 HTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQR 254

Query: 82  ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
           A +S P+  + T  L AC +  +    + LHGFV ++GY   V V+  L+  Y+  G + 
Sbjct: 255 AGMS-PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVP 313

Query: 142 AARSVFDNMPE-RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
            AR VF+ M E R +VSW S+I+         EA++L+  M    V  DG + + LL +C
Sbjct: 314 MARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHAC 373

Query: 201 AHVGALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLS 258
           +H G +  G  +   +         +     +VD+Y + G L  A+    +M      + 
Sbjct: 374 SHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIV 433

Query: 259 WNSMIVGYGVHG 270
           W +++     HG
Sbjct: 434 WRTLLGACSSHG 445



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/378 (20%), Positives = 145/378 (38%), Gaps = 75/378 (19%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR--GYAANGVIEAARSVFDNMPER 153
           L +C+ ++AL    ++HG  I+ G +     +  L+     + +  +  AR +    PE 
Sbjct: 4   LNSCKNLRALT---QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 60

Query: 154 DLVSWNSIISCYTQASFHLEALKLY-ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           D   +N+++  Y+++     ++ ++ E MR   V  D F+   ++ +  +  +L  G  +
Sbjct: 61  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 120

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK------------------- 253
           H  A + G    ++VG  L+ MY  CG ++ A  VF  M +                   
Sbjct: 121 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDV 180

Query: 254 ------------RDVLSWNSMIVGYGVHGRGDEAISFFKQM------------------- 282
                       R+  SWN M+ GY   G  + A   F +M                   
Sbjct: 181 AGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNG 240

Query: 283 ------------LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
                         AG  P+ ++  G+L  CS  G  E G +  H  V +      +   
Sbjct: 241 SFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFG-KILHGFVEKAGYSWIVSVN 299

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVL-WRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
             L+D+Y R G +  A  V         ++ W +++    +H     GE A++   ++ A
Sbjct: 300 NALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQ---GEEAVRLFNEMTA 356

Query: 390 --ASAGDYVLLATIYACT 405
              +      ++ ++AC+
Sbjct: 357 YGVTPDGISFISLLHACS 374


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 189/560 (33%), Positives = 299/560 (53%), Gaps = 53/560 (9%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +      +W SL   + +   P + +  +  M  + + +P+  T +  L AC 
Sbjct: 132 ARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGV-KPNPMTVSSILPACA 190

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +K L   +E+HGF +R G    + V + L+  YA    +  AR VFD MP RD+VSWN 
Sbjct: 191 ELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNG 250

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +++ Y +   + +   L+ +M  + V  D  T   ++  C   G     + + R   +MG
Sbjct: 251 VLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMG 310

Query: 221 F----------------VESVYVG-------------------NALVDMYAKCGNLDSAF 245
           F                 E++ +G                    AL+ MYAKCG+L+ + 
Sbjct: 311 FKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSR 370

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  MR++DV++WN+MI+   +HG G EA+  F +ML++   P+S+TF G+L GCSH  
Sbjct: 371 NVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSR 430

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRT 363
           LVEEGV+ F+ M   + ++P   HY C+VD+Y RAG+L +A + I    P +P    W  
Sbjct: 431 LVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQ-GMPMEPTASAWGA 489

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LL +C++++NVE+ +I+ K L ++E  + G+YV L  I    K     ++ R L+K  GI
Sbjct: 490 LLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGI 549

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
             TPG SW+++GN+VH FVV DKS+ ++D IY  L+E++ + K  GY  D   V      
Sbjct: 550 TKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQ 609

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-------SIAYSRD-----LIV 531
            E    +S   HSEKLA+AFG+      +++R+ KNLR       +I Y        ++V
Sbjct: 610 EEK--AESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVV 667

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RD +R+HHF++G CSC D W
Sbjct: 668 RDSLRFHHFKNGNCSCKDLW 687



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 163/368 (44%), Gaps = 37/368 (10%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+ I  P     ++LI A        +AI  Y+ +    + +PD   F    KAC 
Sbjct: 31  ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGI-KPDMPVFLAAAKACA 89

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
                 + +E+H    R G    V V   L+  Y     +E AR VFD++  RD+VSW S
Sbjct: 90  VSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTS 149

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           + SCY +  F  + + ++  M +  V  +  T+  +L +CA +  L  G  +H  A   G
Sbjct: 150 LSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHG 209

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY-------------- 266
            V +++V +ALV +YAKC ++  A  VF  M  RDV+SWN ++  Y              
Sbjct: 210 MVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFL 269

Query: 267 -----GV----------------HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
                GV                +GR +EA+  F++M   GF P+ IT   +L  CS   
Sbjct: 270 KMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSE 329

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +  G E  H  V R+     +     L+ +Y + G L  +  V +     D V W T++
Sbjct: 330 NLRMGKE-IHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMI 388

Query: 366 GSCKIHRN 373
            +  +H N
Sbjct: 389 IANAMHGN 396



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 15/326 (4%)

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189
           L+R     G    AR +FDN+P+ D  + +++IS  T      EA+K+Y  ++   +  D
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249
               +    +CA  G       +H  A   G +  V+VGNAL+  Y KC  ++ A  VF 
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 137

Query: 250 RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
            +  RDV+SW S+   Y   G   + +  F++M  +G  P+ +T   +L  C+    ++ 
Sbjct: 138 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 197

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCK 369
           G E  H    R+ +   +     LV LY +   + +A  V +     D V W  +L +  
Sbjct: 198 GKE-IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 256

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKL----IKSNG 422
            ++  E G  ++   +  +   A +    A I  C ++   EE V   RK+     K N 
Sbjct: 257 KNKEYEKG-FSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNE 315

Query: 423 IKTT---PGWSWIE---IGNQVHKFV 442
           I  +   P  S+ E   +G ++H +V
Sbjct: 316 ITISSILPACSFSENLRMGKEIHCYV 341



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 2/145 (1%)

Query: 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
           ++G  L+ +    G+ + A  +F  + + D  + +++I     HG  +EAI  +  +   
Sbjct: 13  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 72

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345
           G  PD   FL     C+  G     V+  H   +R  +   +     L+  YG+   +E 
Sbjct: 73  GIKPDMPVFLAAAKACAVSGDALR-VKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEG 131

Query: 346 ALEVINTSSPSDPVLWRTLLGSCKI 370
           A  V +     D V W T L SC +
Sbjct: 132 ARRVFDDLVVRDVVSW-TSLSSCYV 155



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 19/162 (11%)

Query: 30  YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
           Y  +    L+ ++ +F+ ++     AWN++I A A   +  +A+F ++ ML++ + +P++
Sbjct: 358 YMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRV-QPNS 416

Query: 90  FTFTFTLKAC-------ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            TFT  L  C       E V+  N     H     + +  CVV        Y+  G +  
Sbjct: 417 VTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVV------DIYSRAGRLNE 470

Query: 143 ARSVFDNMP-ERDLVSWNSII-SCYTQASFHL---EALKLYE 179
           A      MP E    +W +++ +C    +  L    A KL+E
Sbjct: 471 AYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFE 512


>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
          Length = 656

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 181/471 (38%), Positives = 273/471 (57%), Gaps = 17/471 (3%)

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L  C   K +    ++H   ++   E  V V + L+  Y        A  VF+ +PE++
Sbjct: 189 VLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKN 248

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +VSW +I++ YTQ     +AL+L+  M  E V  + FT    L+SCA +  L  G  L  
Sbjct: 249 IVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGA 308

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              + G    + V NAL++MY+K G+++ A  VF  M  RDV+SWNS+I+GY  HGR  E
Sbjct: 309 CTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRARE 368

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A+  F  ML A   P  +TF+G+L  C+  GLV+EG  Y ++M+    +KPG +HY C+V
Sbjct: 369 AMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMV 428

Query: 335 DLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
            L  R G+L++A   I ++   +D V WR+LL SC+++RN  +G    + + QL+    G
Sbjct: 429 GLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVG 488

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            YVLL+ +YA     +GV + R+L++  G++  PG SWI++G++VH F  +DK HP  + 
Sbjct: 489 TYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQ 548

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFL-EKSSAYHSEKLAIAFGLATTPDGT 512
           I +KL+E++ + K IGY  +   +AV+    ED   E+   YHSEKLA+AFGL  TP G 
Sbjct: 549 ITKKLQELIDKIKVIGYVPN---IAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGE 605

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           ++RI+KN+R            S+A  R ++VRD VR+H   DG+CSC DYW
Sbjct: 606 AIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 656



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 3/225 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  +F  +      +W +++ A+ Q+     A+  +  M M  + RP+ FT+   L +C 
Sbjct: 237 ANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGV-RPNEFTYAVALNSCA 295

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +  L     L    +++G+   + V   LM  Y+ +G +E AR VF +MP RD+VSWNS
Sbjct: 296 GLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNS 355

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEM 219
           II  Y       EA++ +  M F +      T + +LS+CA +G ++ G  +L+ +  E+
Sbjct: 356 IIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEV 415

Query: 220 GFVESVYVGNALVDMYAKCGNLDSA-FCVFSRMRKRDVLSWNSMI 263
           G          +V +  + G LD A   + S     DV++W S++
Sbjct: 416 GVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLL 460



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 7/210 (3%)

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC-LLSSCAHVGALNMGIFLHRIAC 217
           ++++  Y Q +   EA+K Y +   E     G  ++C +L  CA    + +G  +H  A 
Sbjct: 152 SAVLHMYCQCAHMDEAVK-YSKKHGEKCRAMGSCVICRVLGHCASTKEVVLGSQVHTQAL 210

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +     +VYVG+ALVDMY KC     A  VF  + +++++SW +++  Y  +   ++A+ 
Sbjct: 211 KRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQ 270

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG--VEYFHMMVSRYNLKPGIKHYGCLVD 335
            F  M M G  P+  T+   L  C+    ++ G  +    M    + L P       L++
Sbjct: 271 LFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCN---ALMN 327

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y ++G +E A  V  +    D V W +++
Sbjct: 328 MYSKSGSVEDARRVFLSMPCRDVVSWNSII 357



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 4/136 (2%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           + +H  V+R+     VV   NL+  Y   G +  AR VFD MP R+ VS N ++S Y  +
Sbjct: 36  KAVHARVVRAARFD-VVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASS 94

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
             H +AL L   +R  D GL+ + L   +++ AHV + +MG   H  A + G  E  YV 
Sbjct: 95  GRHRDALAL---LRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVC 151

Query: 229 NALVDMYAKCGNLDSA 244
           +A++ MY +C ++D A
Sbjct: 152 SAVLHMYCQCAHMDEA 167



 Score = 39.3 bits (90), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           G L++G  +H         + V   N L+ +Y KCG L  A  VF  M  R+ +S N ++
Sbjct: 30  GELSLGKAVHARVVRAARFDVVQYNN-LIALYVKCGRLGLARQVFDAMPSRNPVSGNLLM 88

Query: 264 VGYGVHGRGDEAISFFK 280
            GY   GR  +A++  +
Sbjct: 89  SGYASSGRHRDALALLR 105


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 177/521 (33%), Positives = 283/521 (54%), Gaps = 16/521 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LF+++      ++N +I A+A +      +  +  M      R     +   L     + 
Sbjct: 293 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDR-QVLPYATMLSVAGSLP 351

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            ++  +++H  ++  G     ++   L+  Y+  G+++AA+S F N  E+  +SW ++I+
Sbjct: 352 DVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALIT 411

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y Q   H EAL+L+  MR   +  D  T   ++ + + +  + +G  LH      G+  
Sbjct: 412 GYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKS 471

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           SV+ G+ LVDMYAKCG LD A   F  M +R+ +SWN++I  Y  +G    AI  F+ ML
Sbjct: 472 SVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGML 531

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             GF+PDS+TFL +L  CSH GL +E ++YFH+M  +Y++ P  +HY C++D  GR G  
Sbjct: 532 HCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCF 591

Query: 344 EKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
            +  + ++     +DP++W ++L SC+IH N E+  +A   L  +E   A  YV+L+ IY
Sbjct: 592 SQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIY 651

Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
           A     E  A  +K+++  G++   G+SW+EI  +++ F  +D + P  D I  +L+ + 
Sbjct: 652 ARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLY 711

Query: 463 HRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR- 521
                 GY  D +  A+     E  LE S  YHSE+LAIAF L  TP GT +RI+KNL  
Sbjct: 712 KEMDKQGYKPDIT-CALHMVDHELKLE-SLKYHSERLAIAFALMNTPAGTPIRIMKNLTA 769

Query: 522 -----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                      S   +RD+IVRD  R+HHF+DG+CSCGDYW
Sbjct: 770 CLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 149/337 (44%), Gaps = 11/337 (3%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A S S  L  AQ LF    +     W  ++RA A +     A+  +  ML   +  PD  
Sbjct: 83  AYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI-PDRV 141

Query: 91  TFTFTLKACERVKALNKC--QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
           T T  L        L  C    LH F I+ G +  V V   L+  Y  +G++ AAR VF 
Sbjct: 142 TVTTVLN-------LPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFL 194

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            M ++D V++N+++   ++   H +AL+L+  MR   +    FT   +L+  A +  L +
Sbjct: 195 EMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLL 254

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G  +H +      V +V+V N+L+D Y+KC  LD    +F  M +RD +S+N +I  Y  
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAW 314

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +      +  F++M   GF    + +  +L        V  G +  H  +    L     
Sbjct: 315 NQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQ-IHAQLVLLGLASEDL 373

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
               L+D+Y + G L+ A    +  S    + W  L+
Sbjct: 374 LGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALI 410



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 17/249 (6%)

Query: 125 VVSTNL-MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           + S NL +  Y+++G + AA+ +F + P R+  +W  ++  +  A    +AL L+  M  
Sbjct: 74  IFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLG 133

Query: 184 EDVGLDGFTLVCLLS--SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           E V  D  T+  +L+   C           LH  A + G    V+V N L+D Y K G L
Sbjct: 134 EGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCKHGLL 186

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL--- 298
            +A  VF  M  +D +++N+M++G    G   +A+  F  M  AG      TF  +L   
Sbjct: 187 AAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVA 246

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
            G +H  L  +     H +V R      +     L+D Y +   L+    + +     D 
Sbjct: 247 AGMAHLLLGHQ----VHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDN 302

Query: 359 VLWRTLLGS 367
           V +  ++ +
Sbjct: 303 VSYNVIIAA 311



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 10/148 (6%)

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
           ++++  N ++  Y+  G+L +A  +F     R+  +W  M+  +   GR  +A+S F+ M
Sbjct: 72  KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 131

Query: 283 LMAGFHPDSITFLGL--LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           L  G  PD +T   +  L GC+        V   H    ++ L   +     L+D Y + 
Sbjct: 132 LGEGVIPDRVTVTTVLNLPGCT--------VPSLHPFAIKFGLDTHVFVCNTLLDAYCKH 183

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSC 368
           G L  A  V       D V +  ++  C
Sbjct: 184 GLLAAARRVFLEMHDKDAVTYNAMMMGC 211


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 213/600 (35%), Positives = 310/600 (51%), Gaps = 83/600 (13%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           AIS+S +L YA+ L      P    +N+L+R +++S  P  ++  +  M+      PD+F
Sbjct: 48  AISISDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSF 107

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           +F F +KA E  ++L    ++H   ++ G E  + V T L+  Y   G +E AR VFD M
Sbjct: 108 SFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEM 167

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFE-----DVGLDGFTLVCLLSSC----- 200
            + +LV+WN++I+   + +    A +++++M        +V L G+     L S      
Sbjct: 168 HQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFS 227

Query: 201 -----------------AHVGALNMGIFLHR------------------IACEM------ 219
                            AH G+ N      R                   AC        
Sbjct: 228 EMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEF 287

Query: 220 -----GFVES------VYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYG 267
                GFVE       V V NAL+DMY++CGN+  A  VF  M+ KR ++SW SMI G  
Sbjct: 288 GKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLA 347

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           +HG+G+EA+  F +M   G  PD I+F+ LL  CSH GL+EEG +YF  M   Y+++P I
Sbjct: 348 MHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEI 407

Query: 328 KHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           +HYGC+VDLYGR+GKL+KA + I     P   ++WRTLLG+C  H N+E+ E   + L +
Sbjct: 408 EHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNE 467

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
           L+  ++GD VLL+  YA     + VA  RK +    IK T  WS +E+G  ++KF   +K
Sbjct: 468 LDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEK 527

Query: 447 SHPDADMIYRKLEEIMHRAK-FIGYTKD--ESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
                   + KL+EI+ R K   GYT +   +L  V     ED + K    HSEKLA+AF
Sbjct: 528 KKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSK----HSEKLALAF 583

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            LA    G ++RIVKNLR            S  Y  +++VRDR R+H F+DG CSC DYW
Sbjct: 584 ALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 4/252 (1%)

Query: 22  HGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81
           H  W +       +  L  A+ +F+++ +    +W+++I   A + S  ++  Y+  +  
Sbjct: 203 HTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQR 262

Query: 82  ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
           A +S P+  + T  L AC +  +    + LHGFV ++GY   V V+  L+  Y+  G + 
Sbjct: 263 AGMS-PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVP 321

Query: 142 AARSVFDNMPE-RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
            AR VF+ M E R +VSW S+I+         EA++L+  M    V  DG + + LL +C
Sbjct: 322 MARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHAC 381

Query: 201 AHVGALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLS 258
           +H G +  G  +   +         +     +VD+Y + G L  A+    +M      + 
Sbjct: 382 SHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIV 441

Query: 259 WNSMIVGYGVHG 270
           W +++     HG
Sbjct: 442 WRTLLGACSSHG 453



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/378 (20%), Positives = 145/378 (38%), Gaps = 75/378 (19%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR--GYAANGVIEAARSVFDNMPER 153
           L +C+ ++AL    ++HG  I+ G +     +  L+     + +  +  AR +    PE 
Sbjct: 12  LNSCKNLRALT---QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 68

Query: 154 DLVSWNSIISCYTQASFHLEALKLY-ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           D   +N+++  Y+++     ++ ++ E MR   V  D F+   ++ +  +  +L  G  +
Sbjct: 69  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK------------------- 253
           H  A + G    ++VG  L+ MY  CG ++ A  VF  M +                   
Sbjct: 129 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDV 188

Query: 254 ------------RDVLSWNSMIVGYGVHGRGDEAISFFKQM------------------- 282
                       R+  SWN M+ GY   G  + A   F +M                   
Sbjct: 189 AGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNG 248

Query: 283 ------------LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
                         AG  P+ ++  G+L  CS  G  E G +  H  V +      +   
Sbjct: 249 SFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFG-KILHGFVEKAGYSWIVSVN 307

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVL-WRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
             L+D+Y R G +  A  V         ++ W +++    +H     GE A++   ++ A
Sbjct: 308 NALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQ---GEEAVRLFNEMTA 364

Query: 390 --ASAGDYVLLATIYACT 405
              +      ++ ++AC+
Sbjct: 365 YGVTPDGISFISLLHACS 382


>gi|115470991|ref|NP_001059094.1| Os07g0191500 [Oryza sativa Japonica Group]
 gi|34394559|dbj|BAC83863.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510108|dbj|BAD30876.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610630|dbj|BAF21008.1| Os07g0191500 [Oryza sativa Japonica Group]
          Length = 550

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 189/509 (37%), Positives = 285/509 (55%), Gaps = 31/509 (6%)

Query: 71  QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC-VVVSTN 129
           +A+  +  +       P   +    L A   + AL + ++LH    + G      VV+ +
Sbjct: 45  RALLLFRSLQSTPSPPPPHVSLPAVLSAAAFLSALPEGRQLHALAAKLGLAPSHTVVANS 104

Query: 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGL 188
           L+  Y++ G+  AA  +F  +P+R LVSWN+ +        HL AL L+  M R  ++  
Sbjct: 105 LLHLYSSCGLPGAALDLFRRIPDRSLVSWNTAVDALVGNGDHLAALDLFREMQRDTELAP 164

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIAC-EMG-------FVESVYVGNALVDMYAKCGN 240
           D +T+  +L +CA  GAL++G++ H +   E+G           + + N+LVD+Y KCG 
Sbjct: 165 DAYTVQSVLGACAGAGALSLGVYAHALLLRELGGDGDGEAVSRDMLINNSLVDLYGKCGA 224

Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLC 299
           L+ A  VF RM  RD+ SWN MI+    HGR  E++  F +M  +    P++ITF+ +L 
Sbjct: 225 LELAQQVFDRMPARDLASWNVMILTLANHGRVCESVELFDRMTQVEKMAPNAITFVAVLS 284

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDP 358
            C+H GLVEEG  YF MMV +Y +KP I+HYGC+VDL  RAG +E+AL+++   +   D 
Sbjct: 285 ACNHGGLVEEGRRYFAMMVDQYRIKPRIEHYGCMVDLLARAGFIEEALDIVAGMNCRPDA 344

Query: 359 VLWRTLLGS-CKIHRNVEIGEIAMKNLVQL-EAASAGDYVLLATIYACTKDEEGVARTRK 416
           ++WR+LL + CK +  +E+ E   K  +++ + A +G YVLL+ +YA  +    V   R+
Sbjct: 345 IIWRSLLDACCKKNAGLELTEAMAKLALEVPDDAVSGVYVLLSRVYASAQRWNDVGMVRR 404

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
           L+   G+K  PG+S IE+   VH+FV  D SHP ++ IY KL+EI  +    GY  D S 
Sbjct: 405 LMVEEGVKKEPGFSSIEMDGLVHQFVAGDTSHPQSEAIYEKLDEIQLKLTSAGYKPDLSE 464

Query: 477 VAVSGSSSEDFLEKSSA--YHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
             +  S       K +A   HSE+LAI+FGL     G  +RI+KNLR            S
Sbjct: 465 APLVASIDN---AKGAALRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTISKLIS 521

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             Y  ++IVRDR+R+HHF+DG CSC DYW
Sbjct: 522 KLYGVEIIVRDRIRFHHFKDGSCSCKDYW 550


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 176/436 (40%), Positives = 257/436 (58%), Gaps = 31/436 (7%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
            R +F  + + ++  WN++I          +A++ Y  MR E    + FT   +L +CA 
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACAR 124

Query: 203 VGALNMGI---------FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
           +  L +G+         ++H+   EMG V +V+VG +LVDMYAKCGN++ A  VF  M +
Sbjct: 125 LLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPE 184

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA---GFHPDSITFLGLLCGCSHQGLVEEG 310
           +D++SW +MI GY ++G   EAI  F QM      G  PD  TF+GLLCGC+H GLV+EG
Sbjct: 185 KDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDEG 244

Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCK 369
             YF+ M   ++L P I+HYGC+VDL GRAG L++A ++I N    ++ ++W  LLG+C+
Sbjct: 245 RRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACR 304

Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
           IHR+ ++ E+A+K L++LE  ++G+YVLL+ IY+     +  A+ R  +    I+  PG 
Sbjct: 305 IHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGC 364

Query: 430 SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDESLVAVSGSSSEDF 487
           SWIE+   VH+F+V DK HP ++ IY KL+E+  + K  GY  T D  L  +     E F
Sbjct: 365 SWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHF 424

Query: 488 LEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRV 535
           L      HSEKLAIAFGL +      +R+VKNLR            S    R++ VRD  
Sbjct: 425 L----GCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNN 480

Query: 536 RYHHFRDGLCSCGDYW 551
           R+H FR+G CSC DYW
Sbjct: 481 RFHCFREGSCSCNDYW 496



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 15/262 (5%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           S  +Y + LF+QI+ P    WN++IR    +     AI +Y  M       P+ FTF F 
Sbjct: 60  SDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGF-LPNNFTFPFV 118

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVV---------VSTNLMRGYAANGVIEAARSV 146
           LKAC R+  L    ++H  V++    +C++         V T+L+  YA  G +E ARSV
Sbjct: 119 LKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSV 178

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED---VGLDGFTLVCLLSSCAHV 203
           FD MPE+D+VSW ++I  Y       EA+ L+ +M+ E+   +  DG T + LL  C H 
Sbjct: 179 FDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHA 238

Query: 204 GALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNS 261
           G ++ G  + + +        S+     +VD+  + G LD A  +   M  + + + W +
Sbjct: 239 GLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGA 298

Query: 262 MIVGYGVHGRGDEAISFFKQML 283
           ++    +H     A    KQ++
Sbjct: 299 LLGACRIHRDTQLAELALKQLI 320


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 185/562 (32%), Positives = 294/562 (52%), Gaps = 51/562 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A+ LF  + +    +WN++I  + Q+    +A+  ++ ML  S   PD FT T  L 
Sbjct: 140 MDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 199

Query: 98  ACERVKALNKCQELHGFVIR--------------SGYERC-------------------V 124
           AC  +  +   +++H +++R              S Y +                    V
Sbjct: 200 ACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNV 259

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           +  T L+ GY   G +E+AR +F  M  RD+V+W ++I  Y Q   + EA+ L+  M   
Sbjct: 260 ISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITC 319

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
               + +TL  +LS CA +  L+ G  +H  A      +S  V NA++ MYA+ G+   A
Sbjct: 320 GPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWA 379

Query: 245 FCVFSRM-RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
             +F ++  +++ ++W SMIV    HG+G+EA+  F++ML AG  PD IT++G+L  CSH
Sbjct: 380 RRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSH 439

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
            G V EG  Y+  + + + + P + HY C+VDL  RAG   +A E I    P +P  + W
Sbjct: 440 AGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIR-RMPVEPDAIAW 498

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
            +LL +C++H+N E+ E+A + L+ ++  ++G Y  +A +Y+        AR  K  K  
Sbjct: 499 GSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEK 558

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
            ++   G+SW  I +++H F  DD  HP  D +Y     +    K  G+  D  L +V  
Sbjct: 559 AVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPD--LQSVLH 616

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
              ++  E+  + HSEKLAIAFGL +TP+ T+LR++KNLR            S    R++
Sbjct: 617 DVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREI 676

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           IVRD  R+HHFRDGLCSC DYW
Sbjct: 677 IVRDATRFHHFRDGLCSCKDYW 698



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 166/393 (42%), Gaps = 73/393 (18%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  L+ A+ +F ++      +W  ++    ++    +AI     M     + P  FT T 
Sbjct: 5   SGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFT-PTQFTLTN 63

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L +C   +A    +++H FV++ G   CV V+ +++  Y   G  E A +VF+ MP R 
Sbjct: 64  VLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRS 123

Query: 155 L-------------------------------VSWNSIISCYTQASFHLEALKLYERMRF 183
           +                               VSWN++I+ Y Q     +ALKL+ RM  
Sbjct: 124 VSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLH 183

Query: 184 E-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC---- 238
           E  +  D FT+  +LS+CA++G + +G  +H          +  V NAL+  YAK     
Sbjct: 184 ESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVE 243

Query: 239 -----------------------------GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
                                        G+++SA  +F  M  RDV++W +MIVGY  +
Sbjct: 244 NARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQN 303

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           GR DEAI  F+ M+  G  P+S T   +L  C+    ++ G +  H    R  L+     
Sbjct: 304 GRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG-KQIHCRAIRSLLEQSSSV 362

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
              ++ +Y R+G    A  +       D V WR
Sbjct: 363 SNAIITMYARSGSFPWARRMF------DQVCWR 389



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 117/256 (45%), Gaps = 33/256 (12%)

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           +A +G +  AR VF  MPERD VSW  ++    +A    EA+K    M  +      FTL
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR--- 250
             +LSSCA   A  +G  +H    ++G    V V N++++MY KCG+ ++A  VF R   
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 251 ----------------------------MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
                                       M  R ++SWN+MI GY  +G   +A+  F +M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181

Query: 283 L-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           L  +   PD  T   +L  C++ G V  G +  H  + R  +    +    L+  Y ++G
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIG-KQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 342 KLEKALEVINTSSPSD 357
            +E A  +++ S  +D
Sbjct: 241 SVENARRIMDQSMETD 256



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           M+AK G L  A  VF+ M +RD +SW  M+VG    GR  EAI     M   GF P   T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 294 FLGLL--CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
              +L  C  +  G V   V   H  V +  L   +     ++++YG+ G  E A  V
Sbjct: 61  LTNVLSSCAVTQAGAVGRKV---HSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTV 115


>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
 gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
 gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 776

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 182/532 (34%), Positives = 295/532 (55%), Gaps = 34/532 (6%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSP---LQAIFYYNHMLMASLSRPDTFTFT 93
           +L+ A  LF  + +P     N++I  F +  +     +A+  Y+ +    + +P  F+F+
Sbjct: 262 ALTNAVALFKSVPDPNVIVLNAMIAGFCREEAADVAREALGLYSELQSRGM-QPSEFSFS 320

Query: 94  FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
             L+AC         +++HG V++  ++  V + + L+  Y+ +G +E     F ++P++
Sbjct: 321 SILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQ 380

Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
           D+V W S+IS   Q     EAL+L++      +  D F +  ++++CA +     G  + 
Sbjct: 381 DVVIWTSVISGCVQNELFEEALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQIQ 440

Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
            +A + GF     +GN+ + M A+ G++D+A   F  M  RDV+SW+++I  +  HG   
Sbjct: 441 CLAVKSGFNRFTAMGNSFIHMCARSGDVDAATRRFQEMESRDVVSWSAVISSHAHHGCAR 500

Query: 274 EAISFFKQMLMAGF-HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
           +A+  F +ML A    P+ ITFL +L  CSH GLV+EG+ Y+ +M   Y L P IKH  C
Sbjct: 501 DALCVFNEMLDAKVAPPNEITFLSILTACSHGGLVDEGLRYYGIMNDEYGLSPTIKHCTC 560

Query: 333 LVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           +VDL GRAG+L  A   I  S+   D V+WR+LL SC+IH ++E G++    ++ LE  S
Sbjct: 561 VVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADKIMDLEPTS 620

Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
           +  YV+L  +Y    +    ++TR L+K  G+K  PG SWIE+ + VH FV  DKSHP++
Sbjct: 621 SASYVILYNMYLDAGELSSASKTRDLMKERGVKKEPGLSWIELSSGVHSFVAGDKSHPES 680

Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
             IYRK+ E++ +              V+G SS +  +  +  HSEKLA+AFG+   P  
Sbjct: 681 KAIYRKVAEMVSK--------------VAGISSRE--QDLAGCHSEKLAVAFGMIHLPQS 724

Query: 512 TSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             +R++KNLR            S +  R++I+RD +R+H FRDG CSCG YW
Sbjct: 725 APIRVMKNLRVCRDCHSTMELISKSERREIILRDAIRFHRFRDGSCSCGGYW 776



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 210/457 (45%), Gaps = 33/457 (7%)

Query: 26  LLNSYA-ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           LL SY  + V + L  A+LL +++      ++N +I A++++  P  ++  +     A  
Sbjct: 40  LLASYCRLGVGAPLHAARLL-DEMPRRNAVSYNLVIVAYSRAGLPALSLATFARA-RAWA 97

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
              D FT+   L AC R   +   + +H  V+  G    + +S ++   YA  G +  AR
Sbjct: 98  RVVDRFTYAAALAACSRALDVRTGKAVHAMVVLGGLGNGLFLSNSVASMYARCGEMGEAR 157

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC---- 200
            VFD   ERD VSWN+++S Y +A    E L+++  M    +G + F L  ++  C    
Sbjct: 158 RVFDAAEERDDVSWNALLSGYVRAGAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSS 217

Query: 201 -----AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
                  VG   +   +H    + G    +++ +A++DMYAK G L +A  +F  +   +
Sbjct: 218 SYAAAGDVGGGRIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPN 277

Query: 256 VLSWNSMIVGYGVHGRGD---EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           V+  N+MI G+      D   EA+  + ++   G  P   +F  +L  C+  G    G +
Sbjct: 278 VIVLNAMIAGFCREEAADVAREALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFG-K 336

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372
             H  V +++ +  +     L+DLY  +G +E       +    D V+W +++  C  + 
Sbjct: 337 QIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQN- 395

Query: 373 NVEIGEIAMKNLVQLEAASAG----DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPG 428
             E+ E A++ L Q E+   G     + + + + AC      VART + I+   +K+  G
Sbjct: 396 --ELFEEALR-LFQ-ESVRCGLRPDVFAMSSVMNACAS--LAVARTGEQIQCLAVKS--G 447

Query: 429 WS-WIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHR 464
           ++ +  +GN    F+       D D   R+ +E+  R
Sbjct: 448 FNRFTAMGNS---FIHMCARSGDVDAATRRFQEMESR 481



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 126/289 (43%), Gaps = 13/289 (4%)

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV---IEAARSVFDN 149
            F L       AL     +H  + R+     + +   L+  Y   GV   + AAR + D 
Sbjct: 3   AFYLHLLRSCAALPHVAAVHAHLARAHPNASLFLRNCLLASYCRLGVGAPLHAAR-LLDE 61

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           MP R+ VS+N +I  Y++A     +L  + R R     +D FT    L++C+    +  G
Sbjct: 62  MPRRNAVSYNLVIVAYSRAGLPALSLATFARARAWARVVDRFTYAAALAACSRALDVRTG 121

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H +    G    +++ N++  MYA+CG +  A  VF    +RD +SWN+++ GY   
Sbjct: 122 KAVHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNALLSGYVRA 181

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGC------SHQGLVEEG--VEYFHMMVSRY 321
           G  +E +  F  M   G   +S     ++  C      +  G V  G   E  H  V + 
Sbjct: 182 GAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHGCVVKA 241

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCK 369
            L   +     ++D+Y + G L  A+ +  +   P+  VL   + G C+
Sbjct: 242 GLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCR 290


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 201/567 (35%), Positives = 301/567 (53%), Gaps = 27/567 (4%)

Query: 2   GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQL-LFNQIQNPQTQAWNSLI 60
           GL+ H + + L    +A  +    L+N Y+    ++L ++ L LF+   +     W+S+I
Sbjct: 26  GLQLHGQVIKL--GFEAIPLVCHHLINFYS---KTNLPHSSLKLFDSFPHKSATTWSSVI 80

Query: 61  RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
            +FAQ+  PL A+ ++  ML   L  PD  T     K+   + +L     LH   +++ +
Sbjct: 81  SSFAQNDLPLPALRFFRRMLRHGL-LPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAH 139

Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
              V V ++L+  YA  G +  AR VFD MP +++VSW+ +I  Y+Q     EAL L++R
Sbjct: 140 HHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKR 199

Query: 181 MRFED--VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
              +D  + ++ FTL  +L  C+      +G  +H +  +  F  S +V ++L+ +Y+KC
Sbjct: 200 ALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKC 259

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G ++  + VF  ++ R++  WN+M++    H         F++M   G  P+ ITFL LL
Sbjct: 260 GVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLL 319

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             CSH GLVE+G   F +M   + ++PG +HY  LVDL GRAGKLE+A+ VI    P  P
Sbjct: 320 YACSHAGLVEKGEHCFGLM-KEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIK-EMPMQP 377

Query: 359 V--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
              +W  LL  C+IH N E+       + ++ A S+G  VLL+  YA     E  AR RK
Sbjct: 378 TESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARK 437

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
           +++  GIK   G SW+E GN+VH F   D+SH     IY KLEE+       GY  D S 
Sbjct: 438 MMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADTSF 497

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
           V       E    ++  YHSE+LAIAFGL T P    +R++KNLR            S  
Sbjct: 498 VLKEVDGDEK--SQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKC 555

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             R +IVRD  R+H F DG C+CGDYW
Sbjct: 556 TGRVIIVRDNNRFHRFEDGKCTCGDYW 582



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 137/272 (50%), Gaps = 3/272 (1%)

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161
            ++L K  +LHG VI+ G+E   +V  +L+  Y+   +  ++  +FD+ P +   +W+S+
Sbjct: 20  TRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSV 79

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           IS + Q    L AL+ + RM    +  D  TL     S A + +L + + LH ++ +   
Sbjct: 80  ISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAH 139

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
              V+VG++LVD YAKCG+++ A  VF  M  ++V+SW+ MI GY   G  +EA++ FK+
Sbjct: 140 HHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKR 199

Query: 282 MLMAGF--HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
            L   +    +  T   +L  CS   L E G +  H +  + +          L+ LY +
Sbjct: 200 ALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQ-VHGLCFKTSFDSSCFVASSLISLYSK 258

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            G +E   +V       +  +W  +L +C  H
Sbjct: 259 CGVVEGGYKVFEEVKVRNLGMWNAMLIACAQH 290



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
            H  +L  G+ LH    ++GF     V + L++ Y+K     S+  +F     +   +W+
Sbjct: 18  THTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWS 77

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
           S+I  +  +     A+ FF++ML  G  PD  T 
Sbjct: 78  SVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTL 111


>gi|387169573|gb|AFJ66232.1| hypothetical protein 34G24.32 [Capsella rubella]
          Length = 598

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 173/443 (39%), Positives = 269/443 (60%), Gaps = 22/443 (4%)

Query: 125 VVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-R 182
           V +TN++       G    A+ V     ++++++WN +I  Y +   + EALK  + M  
Sbjct: 162 VSNTNIIIESLMKTGEYGLAKKVLRRASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLS 221

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
           F D+  + F+    L++CA +G L+   ++H +  + G   +  + +ALVD+YAKCG+++
Sbjct: 222 FSDIKPNKFSFASALAACARLGDLHHAKWVHSLMIDAGIELNTILSSALVDVYAKCGDIE 281

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
           ++  VF  ++  DV  WN+MI G+  HG   EAI  F +M      PDSITFLG+L  CS
Sbjct: 282 TSREVFYSVKWNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGILTACS 341

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VL 360
           H GL+EEG E+F +M  R++++P ++HYG +VDL GRAG++++A ++I  S P +P  V+
Sbjct: 342 HCGLLEEGKEFFGLMSQRFSIQPKLEHYGAMVDLLGRAGQVKEAYDLIE-SMPIEPDVVI 400

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           WR+LL S + ++N E+GEIA++NL +   A +GDYVLL+ IY+ TK  E   + R+L+  
Sbjct: 401 WRSLLSSARTYKNPELGEIAIQNLSK---AKSGDYVLLSNIYSSTKKWENAQKVRELMTK 457

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
            GI+   G SW+E G  +H+F   D SH D   IY+ LE ++ +AK  G+  D  LV + 
Sbjct: 458 EGIRKAKGKSWVEFGGVIHRFKAGDTSHIDTKAIYKVLEGLIQKAKSEGFVSDTDLVLMD 517

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
            S  E   E++  YHSEKLA+A+ +  +  G+ +RI KN+R            S   +R 
Sbjct: 518 VSEEEK--EENLNYHSEKLALAYVILKSSPGSEIRIQKNIRMCSDCHNWIKAVSKLLNRV 575

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +I+RDR+R+H F DGLCSC DYW
Sbjct: 576 IIMRDRIRFHRFEDGLCSCKDYW 598



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 113/225 (50%), Gaps = 2/225 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +  +  +     WN +I  + +++   +A+    +ML  S  +P+ F+F   L AC 
Sbjct: 181 AKKVLRRASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKPNKFSFASALAACA 240

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R+  L+  + +H  +I +G E   ++S+ L+  YA  G IE +R VF ++   D+  WN+
Sbjct: 241 RLGDLHHAKWVHSLMIDAGIELNTILSSALVDVYAKCGDIETSREVFYSVKWNDVSIWNA 300

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEM 219
           +I+ +       EA++++  M  E V  D  T + +L++C+H G L  G  F   ++   
Sbjct: 301 MITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGILTACSHCGLLEEGKEFFGLMSQRF 360

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
                +    A+VD+  + G +  A+ +   M  + DV+ W S++
Sbjct: 361 SIQPKLEHYGAMVDLLGRAGQVKEAYDLIESMPIEPDVVIWRSLL 405


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 198/555 (35%), Positives = 304/555 (54%), Gaps = 62/555 (11%)

Query: 50  NPQTQAWNSLIRAFAQSLS-----PLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
           N ++  WN+LIRA  +S       P     Y    L A L  PD  TF F L++   +  
Sbjct: 21  NIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVL--PDLHTFPFLLQS---INT 75

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
            ++ ++LH  ++  G      V T+L+  Y++ G    AR  FD + + DL SWN+II  
Sbjct: 76  PHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHA 135

Query: 165 YTQASFHLEALKLYERMRFEDV---------------------------GLDG------- 190
             +A     A KL+++M  ++V                            L+G       
Sbjct: 136 NAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNE 195

Query: 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250
           FT+  +LS+CA +GAL  G ++H    + G    V +G +L+DMYAKCG+++ A C+F  
Sbjct: 196 FTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDN 255

Query: 251 M-RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309
           +  ++DV++W++MI  + +HG  +E +  F +M+  G  P+++TF+ +LC C H GLV E
Sbjct: 256 LGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSE 315

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGS 367
           G EYF  M++ Y + P I+HYGC+VDLY RAG++E A  V+  S P +P  ++W  LL  
Sbjct: 316 GNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVK-SMPMEPDVMIWGALLNG 374

Query: 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTP 427
            +IH +VE  EIA+  L++L+ A++  YVLL+ +YA       V   R L++  GIK  P
Sbjct: 375 ARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLP 434

Query: 428 GWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDF 487
           G S +E+   + +F   D SHP+   +Y  L+EIM R +  GY ++   V +     E+ 
Sbjct: 435 GCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLL--DLDEEG 492

Query: 488 LEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRV 535
            E + + HSEKLAIA+    T  GT++RIVKNLR            S  ++R++IVRD  
Sbjct: 493 KEFALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCN 552

Query: 536 RYHHFRDGLCSCGDY 550
           R+HHF++GLCSC DY
Sbjct: 553 RFHHFKNGLCSCKDY 567



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 127/235 (54%), Gaps = 5/235 (2%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQ--SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           A+ LF+Q+      +W+ +I  +          ++F     L  S  RP+ FT +  L A
Sbjct: 145 ARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSA 204

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM-PERDLVS 157
           C R+ AL   + +H ++ ++G +  VV+ T+L+  YA  G IE A+ +FDN+ PE+D+++
Sbjct: 205 CARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMA 264

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIA 216
           W+++I+ ++      E L+L+ RM  + V  +  T V +L +C H G ++ G  +  R+ 
Sbjct: 265 WSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMM 324

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHG 270
            E G    +     +VD+Y++ G ++ A+ V   M  + DV+ W +++ G  +HG
Sbjct: 325 NEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHG 379


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 192/539 (35%), Positives = 295/539 (54%), Gaps = 36/539 (6%)

Query: 44  LFNQIQNPQTQ----AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           LF +I+  + +     W+++I  +AQ     +A+  +  ML+   S P+  T    L  C
Sbjct: 338 LFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCG-SEPNVVTLVSLLSGC 396

Query: 100 ERVKALNKCQELHGFVIR-------SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
                L   +E H   I+       +     ++V   L+  Y+     +AAR++FD +P 
Sbjct: 397 ASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPP 456

Query: 153 RD--LVSWNSIISCYTQASFHLEALKLYERMRFED--VGLDGFTLVCLLSSCAHVGALNM 208
           +D  +V+W  +I    Q     EAL+L+ +M   D  V  + FT+ C L +CA +GAL  
Sbjct: 457 KDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRF 516

Query: 209 GIFLHRIACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           G  +H       F  + ++V N L+DMY+K G++D+A  VF  M +R+ +SW S++ GYG
Sbjct: 517 GRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYG 576

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           +HGRG+EA+  F +M      PD +TF+ +L  CSH G+V++G+ YF+ M   + + PG 
Sbjct: 577 MHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGA 636

Query: 328 KHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           +HY C+VDL  RAG+L++A+E+I        P +W  LL +C+++ NVE+GE A   L++
Sbjct: 637 EHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLE 696

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
           LE+ + G Y LL+ IYA  +  + VAR R L+K+ GIK  PG SW++       F   D 
Sbjct: 697 LESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDW 756

Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           SHP +  IY  L ++M R K +GY  D   +L  V      D L +    HSEKLA+A+G
Sbjct: 757 SHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSE----HSEKLALAYG 812

Query: 505 LATTPDGTSLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + TT  G  +RI KNLR+                 ++IVRD  R+HHF++G CSC  YW
Sbjct: 813 ILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 179/364 (49%), Gaps = 50/364 (13%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WN LIR  +  L  L+ +      +     RPD +TF F LKAC  + +      +H  V
Sbjct: 113 WNQLIRR-SVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVV 171

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER---DLVSWNSIISCYTQASFHL 172
             SG+E  V V   L+  Y   G  E AR VFD M ER   DLVSWNSI++ Y Q    +
Sbjct: 172 FASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSI 231

Query: 173 EALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
            A+K++ERM  ED+G+  D  +LV +L +CA VGA + G  +H  A   G  E V+VGNA
Sbjct: 232 RAMKMFERMT-EDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA 290

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD----------------- 273
           +VDMYAKCG ++ A  VF RM+ +DV+SWN+M+ GY   GR D                 
Sbjct: 291 VVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELN 350

Query: 274 ------------------EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YF 314
                             EA+  F+QML+ G  P+ +T + LL GC+  G +  G E + 
Sbjct: 351 VVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHC 410

Query: 315 HMMVSRYNL---KPG--IKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGS 367
           H +    NL    PG  +     L+D+Y +    + A  + +   P D   V W  L+G 
Sbjct: 411 HAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGG 470

Query: 368 CKIH 371
              H
Sbjct: 471 NAQH 474



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 195/426 (45%), Gaps = 58/426 (13%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WNS++ A+ Q    ++A+  +  M      RPD  +    L AC  V A ++ +++HG+
Sbjct: 216 SWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGY 275

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
            +RSG    V V   ++  YA  G++E A  VF+ M  +D+VSWN++++ Y+Q     +A
Sbjct: 276 ALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDA 335

Query: 175 LKLYERMRFEDVGLD----------------GF-------------------TLVCLLSS 199
           L L+E++R E + L+                GF                   TLV LLS 
Sbjct: 336 LGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSG 395

Query: 200 CAHVGALNMG--IFLHRIACEMGFVES-----VYVGNALVDMYAKCGNLDSAFCVFSRMR 252
           CA  G L  G     H I   +   E+     + V NAL+DMY+KC +  +A  +F  + 
Sbjct: 396 CASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIP 455

Query: 253 KRD--VLSWNSMIVGYGVHGRGDEAISFFKQMLMAG--FHPDSITFLGLLCGCSHQGLVE 308
            +D  V++W  +I G   HG  +EA+  F QML       P++ T    L  C+  G + 
Sbjct: 456 PKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALR 515

Query: 309 EGVEYFHMMVSRYNLKPGIKHYG-CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
            G +  H  V R   +  +     CL+D+Y ++G ++ A  V +     + V W +L+  
Sbjct: 516 FGRQ-IHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTG 574

Query: 368 CKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACTKD---EEGVARTRKLIKSNG 422
             +H     GE A++   +++           +  +YAC+     ++G+     + K  G
Sbjct: 575 YGMHGR---GEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFG 631

Query: 423 IKTTPG 428
           +   PG
Sbjct: 632 V--VPG 635


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 178/522 (34%), Positives = 289/522 (55%), Gaps = 19/522 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F  +      +W ++I ++ ++    +    +  M +   +RPD F  T  L A    +
Sbjct: 354 IFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEG-TRPDIFAITSALHAFAGNE 412

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L   + +HG+ IR+G E+ + V+  LM  Y   G +E A+ +FD +  +D++SWN++I 
Sbjct: 413 LLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIG 472

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y++ +   EA  L+  M  + +  +  T+ C+L + A + +L  G  +H  A   G++E
Sbjct: 473 GYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLE 531

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
             +V NAL+DMY KCG L  A  +F R+  ++++SW  M+ GYG+HGRG +AI+ F+QM 
Sbjct: 532 DDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMR 591

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
           ++G  PD+ +F  +L  CSH GL +EG  +F  M   + ++P +KHY C+VDL    G L
Sbjct: 592 VSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNL 651

Query: 344 EKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           ++A E I+ S P +P   +W +LL  C+IHRNV++ E   + + +LE  + G YVLLA I
Sbjct: 652 KEAYEFID-SMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANI 710

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           YA  +  E V + +  I   G++   G SWIE   +VH F+ D+++HP    I   L E+
Sbjct: 711 YAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEV 770

Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
             R +  G+   +   A+ G+ +    E     HS KLA+AFG+    +G  +R+ KN R
Sbjct: 771 AKRMQEEGHDPKKKY-ALMGADNAVHGEALCG-HSSKLAVAFGVLNLSEGRLIRVTKNSR 828

Query: 522 SIAY------------SRDLIVRDRVRYHHFRDGLCSCGDYW 551
             ++            SR++I+RD  R+HHF  G CSC  YW
Sbjct: 829 VCSHCHEAAKFISKMCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 166/330 (50%), Gaps = 3/330 (0%)

Query: 38  LSYAQLLFNQI-QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           L  A+ +F+++ Q    + W +L+  +A++    + +  +  M    + RPD +T +  L
Sbjct: 145 LENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGV-RPDAYTISCVL 203

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
           K    + ++   + +HG + + G+     V   LM  YA +   + A  VFD MP RD++
Sbjct: 204 KCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVI 263

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SWNS+IS  T    + +A++L+ RM  E   LD  TL+ +L +CA +  L +G  +H  +
Sbjct: 264 SWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYS 323

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF+    + N L+DMY+ C +  S   +F  M +++V+SW +MI  Y   G  D+  
Sbjct: 324 VKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVA 383

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F++M + G  PD       L   +   L++ G +  H    R  ++  +     L+++
Sbjct: 384 GLFQEMGLEGTRPDIFAITSALHAFAGNELLKHG-KSVHGYAIRNGMEKVLAVTNALMEM 442

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           Y + G +E+A  + +     D + W TL+G
Sbjct: 443 YVKCGNMEEAKLIFDGVVSKDMISWNTLIG 472



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 173/365 (47%), Gaps = 4/365 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A L+F+ + +    +WNS+I     +    +AI  +  M +      D+ T    L AC 
Sbjct: 250 AILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEG-EELDSATLLSVLPACA 308

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +  L   + +HG+ +++G+     ++  L+  Y+      +   +F NM ++++VSW +
Sbjct: 309 ELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTA 368

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I+ YT+A  + +   L++ M  E    D F +   L + A    L  G  +H  A   G
Sbjct: 369 MITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNG 428

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
             + + V NAL++MY KCGN++ A  +F  +  +D++SWN++I GY  +   +EA S F 
Sbjct: 429 MEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFT 488

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML+    P+++T   +L   +    +E G E     + R  L+        L+D+Y + 
Sbjct: 489 EMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFV-ANALIDMYVKC 546

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
           G L  A  + +  S  + + W  ++    +H       IA+   +++   +       A 
Sbjct: 547 GALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGR-DAIALFEQMRVSGIAPDAASFSAI 605

Query: 401 IYACT 405
           +YAC+
Sbjct: 606 LYACS 610



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 134/288 (46%), Gaps = 13/288 (4%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC---VVVSTNLMRGYAANGVIEAAR 144
           D  ++   L+ C  V++L   +  H  V  S   R     V+   L+  Y   G +E AR
Sbjct: 90  DDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENAR 149

Query: 145 SVFDNMPE-RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
            VFD MP+  D+  W +++S Y +A    E + L+ +M    V  D +T+ C+L   A +
Sbjct: 150 RVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGL 209

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
           G++  G  +H +  ++GF     VGNAL+  YAK      A  VF  M  RDV+SWNSMI
Sbjct: 210 GSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMI 269

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            G   +G  D+AI  F +M + G   DS T L +L  C+   L+     +   +V  Y++
Sbjct: 270 SGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLL-----FLGRVVHGYSV 324

Query: 324 KPGI----KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
           K G          L+D+Y          ++       + V W  ++ S
Sbjct: 325 KTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITS 372



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 7/187 (3%)

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRI--ACEMGF--VESVYVGNALVDMYAKCGNLD 242
           G+D  +   +L  C+ V +L  G   H +  A  +G   +++V +G  LV MY KCG+L+
Sbjct: 88  GVDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNV-LGQKLVLMYLKCGDLE 146

Query: 243 SAFCVFSRMRK-RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           +A  VF  M +  DV  W +++ GY   G   E +  F++M   G  PD+ T   +L   
Sbjct: 147 NARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCI 206

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
           +  G +E+G E  H ++ +            L+  Y ++ + + A+ V +     D + W
Sbjct: 207 AGLGSIEDG-EVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISW 265

Query: 362 RTLLGSC 368
            +++  C
Sbjct: 266 NSMISGC 272


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 188/541 (34%), Positives = 295/541 (54%), Gaps = 23/541 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S   SL  A+ +F++++N    AWN++I  +A+  +  QA+  +  M   +  
Sbjct: 204 LINMY--SKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRM-GPNDP 260

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA-NGVIEAAR 144
           +P+  TF   L AC  ++ L + + +H  V   GYE  +V+   L+  Y   +  +E AR
Sbjct: 261 KPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEAR 320

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VF+ M  RD+++WN +I  Y Q     +AL ++++M+ E+V  +  TL  +LS+CA +G
Sbjct: 321 QVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLG 380

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           A   G  +H +         V + N+L++MY +CG+LD    VF+ +R + ++SW+++I 
Sbjct: 381 AKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIA 440

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
            Y  HG     +  F ++L  G   D +T +  L  CSH G+++EGV+ F  MV  + L 
Sbjct: 441 AYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLA 500

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
           P  +H+ C+VDL  RAG+LE A  +I +     D V W +LL  CK+H + +        
Sbjct: 501 PDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADK 560

Query: 384 LVQLEAASAGDYV-LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
           L +LE+      V LL+ +YA     + V +TR        +  PG S+IEI + VH+FV
Sbjct: 561 LFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRRAARKNPGCSYIEINDTVHEFV 617

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             DKSHP+ ++I  +++ +  + K  GY  D  +V    +  E+  E+   YHSEKLAIA
Sbjct: 618 AGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVL--HNVKEEEKEQMLCYHSEKLAIA 675

Query: 503 FGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
           +GL +TP GT L IVKNLR            S    R ++VRD  R+HHF +G CSC DY
Sbjct: 676 YGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDY 735

Query: 551 W 551
           W
Sbjct: 736 W 736



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 122/409 (29%), Positives = 209/409 (51%), Gaps = 10/409 (2%)

Query: 21  IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           I G  L+  YA      L  A+  F+++       WN+LI  ++++     A+  Y  M+
Sbjct: 95  ILGTALITMYA--RCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMV 152

Query: 81  MASLS--RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
             S    +PD  TF+  L AC  V  +++ +E+    + SGY    +V   L+  Y+  G
Sbjct: 153 SKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCG 212

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
            +E+AR VFD +  RD+++WN++IS Y +     +AL+L++RM   D   +  T + LL+
Sbjct: 213 SLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLT 272

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC-GNLDSAFCVFSRMRKRDVL 257
           +C ++  L  G  +HR   E G+   + +GN L++MY KC  +L+ A  VF RMR RDV+
Sbjct: 273 ACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVI 332

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +WN +IV Y  +G+  +A+  FKQM +    P+ IT   +L  C+  G   +G +  H +
Sbjct: 333 TWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG-KAVHAL 391

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIG 377
           ++    K  +     L+++Y R G L+  + V         V W TL+ +   H +   G
Sbjct: 392 IASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTG 451

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGI 423
                 L+Q E  +A D  +++T+ AC+     +EGV     ++  +G+
Sbjct: 452 LEHFWELLQ-EGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGL 499



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 192/373 (51%), Gaps = 8/373 (2%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S++ A  +F+ I++P + +W  ++ AFA++    +A+ YY  M++  L RPD   F   +
Sbjct: 7   SVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL-RPDGAMFVVAI 65

Query: 97  KACERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
             C   K L + Q LH  ++ +   E  +++ T L+  YA    +E AR  FD M ++ L
Sbjct: 66  GVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTL 125

Query: 156 VSWNSIISCYTQASFHLEALKLYERM---RFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           V+WN++I+ Y++   H  ALK+Y+ M     E +  D  T    L +C  VG ++ G  +
Sbjct: 126 VTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREI 185

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
                  G+     V NAL++MY+KCG+L+SA  VF R++ RDV++WN+MI GY   G  
Sbjct: 186 EARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAA 245

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            +A+  F++M      P+ +TF+GLL  C++   +E+G    H  V     +  +     
Sbjct: 246 TQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQG-RAIHRKVREDGYESDLVIGNV 304

Query: 333 LVDLYGR-AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           L+++Y + +  LE+A +V       D + W  L+ +   +   +      K + QLE  +
Sbjct: 305 LLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQM-QLENVA 363

Query: 392 AGDYVLLATIYAC 404
             +  L   + AC
Sbjct: 364 PNEITLSNVLSAC 376



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           Y   G +  A +VF  +   + VSW  I++ + +   + EAL  Y RM  E +  DG   
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
           V  +  C+    L  G  LH +  E   +E  + +G AL+ MYA+C +L+ A   F  M 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA---GFHPDSITFLGLLCGCSHQGLVEE 309
           K+ +++WN++I GY  +G    A+  ++ M+     G  PD+ITF   L  C+  G + +
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQ 181

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           G E     V+       I     L+++Y + G LE A +V +     D + W T++
Sbjct: 182 GREIEARTVASGYASDSIVQ-NALINMYSKCGSLESARKVFDRLKNRDVIAWNTMI 236



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 62/133 (46%)

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY KCG++  A  VF  +   + +SW  ++  +  +G   EA+ ++++M++ G  PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F+  +  CS    +++G     M++    L+  I     L+ +Y R   LE A +  +  
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 354 SPSDPVLWRTLLG 366
                V W  L+ 
Sbjct: 121 GKKTLVTWNALIA 133


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 183/523 (34%), Positives = 289/523 (55%), Gaps = 19/523 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F ++      +W ++I  +++     +A+  +  M+   ++  D      TL AC  +K
Sbjct: 163 VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT-IDQHVLCSTLGACGALK 221

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVSWNSII 162
           A    + +H  V++ G+E  + V   L   Y+  G +E+A +VF    E R++VS+  +I
Sbjct: 222 ACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLI 281

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
             Y +     + L ++  +R + +  + FT   L+ +CA+  AL  G  LH    ++ F 
Sbjct: 282 DGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFD 341

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
           E  +V + LVDMY KCG L+ A   F  +     ++WNS++  +G HG G +AI FF++M
Sbjct: 342 EDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERM 401

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
           +  G  P++ITF+ LL GCSH GLVEEG++YF+ M   Y + PG +HY C++DL GRAG+
Sbjct: 402 VDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGR 461

Query: 343 LEKALEVINTSSPSDPVL--WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
           L++A E IN   P +P    W + LG+C+IH + E+G++A + LV+LE  ++G  VLL+ 
Sbjct: 462 LKEAKEFIN-RMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSN 520

Query: 401 IYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE 460
           IYA  +  E V   R  ++   +K  PG+SW+++G + H F  +D SH     IY KL+ 
Sbjct: 521 IYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDX 580

Query: 461 IMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
           ++ + K  GY      V +     +   EK    HSE++A+AF L + P G  + + KNL
Sbjct: 581 LLDQIKAAGYVPXTDSVPL--DMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNL 638

Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R            S    R +IVRD  R+HHF DG CSCGDYW
Sbjct: 639 RVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 173/341 (50%), Gaps = 5/341 (1%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S    L +A  LF+ +      +W ++I   +Q+    +AI  +  M +    
Sbjct: 46  LVNMY--SKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICG-E 102

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
            P  F F+  ++AC  + ++   +++H   ++ G    + V +NL   Y+  G +  A  
Sbjct: 103 VPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACK 162

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF+ MP +D VSW ++I  Y++     EAL  +++M  E+V +D   L   L +C  + A
Sbjct: 163 VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKA 222

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-RDVLSWNSMIV 264
              G  +H    ++GF   ++VGNAL DMY+K G+++SA  VF    + R+V+S+  +I 
Sbjct: 223 CKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLID 282

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GY    + ++ +S F ++   G  P+  TF  L+  C++Q  +E+G +  H  V + N  
Sbjct: 283 GYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQ-LHAQVMKINFD 341

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                   LVD+YG+ G LE A++  +       + W +L+
Sbjct: 342 EDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLV 382



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 160/341 (46%), Gaps = 12/341 (3%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           DT      ++   + K L + ++LH  +I +GY  C  ++ +L+  Y+  G ++ A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           D MP+R+LVSW ++IS  +Q S   EA++ +  MR        F     + +CA +G++ 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           MG  +H +A + G    ++VG+ L DMY+KCG +  A  VF  M  +D +SW +MI GY 
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
             G  +EA+  FK+M+      D       L  C      + G    H  V +   +  I
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFG-RSVHSSVVKLGFESDI 242

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEI--AMKNLV 385
                L D+Y +AG +E A  V    S    V+  T    C I   VE  +I   +   V
Sbjct: 243 FVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYT----CLIDGYVETEQIEKGLSVFV 298

Query: 386 QL--EAASAGDYVLLATIYACTKD---EEGVARTRKLIKSN 421
           +L  +     ++   + I AC      E+G     +++K N
Sbjct: 299 ELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKIN 339


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 177/521 (33%), Positives = 283/521 (54%), Gaps = 16/521 (3%)

Query: 44   LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
            LF+++      ++N +I A+A +      +  +  M      R     +   L     + 
Sbjct: 491  LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDR-QVLPYATMLSVAGSLP 549

Query: 104  ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
             ++  +++H  ++  G     ++   L+  Y+  G+++AA+S F N  E+  +SW ++I+
Sbjct: 550  DVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALIT 609

Query: 164  CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
             Y Q   H EAL+L+  MR   +  D  T   ++ + + +  + +G  LH      G+  
Sbjct: 610  GYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKS 669

Query: 224  SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            SV+ G+ LVDMYAKCG LD A   F  M +R+ +SWN++I  Y  +G    AI  F+ ML
Sbjct: 670  SVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGML 729

Query: 284  MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
              GF+PDS+TFL +L  CSH GL +E ++YFH+M  +Y++ P  +HY C++D  GR G  
Sbjct: 730  HCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCF 789

Query: 344  EKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
             +  + ++     +DP++W ++L SC+IH N E+  +A   L  +E   A  YV+L+ IY
Sbjct: 790  SQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIY 849

Query: 403  ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
            A     E  A  +K+++  G++   G+SW+EI  +++ F  +D + P  D I  +L+ + 
Sbjct: 850  ARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLY 909

Query: 463  HRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR- 521
                  GY  D +  A+     E  LE S  YHSE+LAIAF L  TP GT +RI+KNL  
Sbjct: 910  KEMDKQGYKPDIT-CALHMVDHELKLE-SLKYHSERLAIAFALMNTPAGTPIRIMKNLTA 967

Query: 522  -----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                       S   +RD+IVRD  R+HHF+DG+CSCGDYW
Sbjct: 968  CLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 1008



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 146/321 (45%), Gaps = 31/321 (9%)

Query: 75  YYNHMLMASLSR-------PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER----- 122
           Y  H L+A+  R        D  T+   +  C +     +  +L   + R+GY R     
Sbjct: 394 YCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHL 453

Query: 123 --------------CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
                          V V+ +L+  Y+    ++  R +FD MPERD VS+N II+ Y   
Sbjct: 454 LQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWN 513

Query: 169 SFHLEALKLYERMRFEDVGLDGFTL--VCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
                 L+L+  M  + +G D   L    +LS    +  +++G  +H     +G      
Sbjct: 514 QCAATVLRLFREM--QKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDL 571

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           +GNAL+DMY+KCG LD+A   FS   ++  +SW ++I GY  +G+ +EA+  F  M  AG
Sbjct: 572 LGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAG 631

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
             PD  TF  ++   S   ++  G +  H  + R   K  +     LVD+Y + G L++A
Sbjct: 632 LRPDRATFSSIIKASSSLAMIGLGRQ-LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEA 690

Query: 347 LEVINTSSPSDPVLWRTLLGS 367
           L   +     + + W  ++ +
Sbjct: 691 LRTFDEMPERNSISWNAVISA 711



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 142/337 (42%), Gaps = 27/337 (8%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A S S  L  AQ LF    +     W  ++RA A +     A+  +  ML   +  PD  
Sbjct: 297 AYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI-PDRV 355

Query: 91  TFTFTLKACERVKALNKC--QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
           T T  L        L  C    LH F I+ G +  V V   L+  Y  +G++ AAR VF 
Sbjct: 356 TVTTVLN-------LPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFL 408

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            M ++D V++N+++   ++   H +AL+L+  MR    G     L  L  S +   + + 
Sbjct: 409 EMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMR--RAGYSRHPLHLLQYSHSRSRSTS- 465

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
                        V +V+V N+L+D Y+KC  LD    +F  M +RD +S+N +I  Y  
Sbjct: 466 -------------VLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAW 512

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +      +  F++M   GF    + +  +L        V  G +  H  +    L     
Sbjct: 513 NQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQ-IHAQLVLLGLASEDL 571

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
               L+D+Y + G L+ A    +  S    + W  L+
Sbjct: 572 LGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALI 608



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 12/170 (7%)

Query: 125 VVSTNL-MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           + S NL +  Y+++G + AA+ +F + P R+  +W  ++  +  A    +AL L+  M  
Sbjct: 288 IFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLG 347

Query: 184 EDVGLDGFTLVCLLS--SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           E V  D  T+  +L+   C           LH  A + G    V+V N L+D Y K G L
Sbjct: 348 EGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCKHGLL 400

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF--HP 289
            +A  VF  M  +D +++N+M++G    G   +A+  F  M  AG+  HP
Sbjct: 401 AAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHP 450



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 10/148 (6%)

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
           ++++  N ++  Y+  G+L +A  +F     R+  +W  M+  +   GR  +A+S F+ M
Sbjct: 286 KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 345

Query: 283 LMAGFHPDSITFLGL--LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           L  G  PD +T   +  L GC+        V   H    ++ L   +     L+D Y + 
Sbjct: 346 LGEGVIPDRVTVTTVLNLPGCT--------VPSLHPFAIKFGLDTHVFVCNTLLDAYCKH 397

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSC 368
           G L  A  V       D V +  ++  C
Sbjct: 398 GLLAAARRVFLEMHDKDAVTYNAMMMGC 425


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 174/441 (39%), Positives = 251/441 (56%), Gaps = 15/441 (3%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           ++    L+ GY   G +E A+S F  MPE++L++W  +IS   Q  F  +ALKL+ +M+ 
Sbjct: 359 IITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKL 418

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           +    + +     +++C+ +GAL  G  LH     +G   ++ VGNA++ MYA+CG +++
Sbjct: 419 DGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEA 478

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F  M   D +SWNSMI   G HG G +AI  ++QML  G  PD  TFL +L  CSH
Sbjct: 479 ARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSH 538

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWR 362
            GLVEEG  YF+ M+  Y + PG  HY  ++DL+ RAGK   A  VI++    +   +W 
Sbjct: 539 AGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWE 598

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
            LL  C+ H N+++G  A + L +L     G YVLL+ +YA       VARTRKL++  G
Sbjct: 599 ALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRG 658

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           +K  P  SW E+ N+VH F+VDD  HP+   IY  LE++    K IGY  D   V     
Sbjct: 659 VKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDME 718

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
           S     E + + HSEKLA+AFGL   P G ++R+ KNLR            S    R+++
Sbjct: 719 SEHK--EYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIV 776

Query: 531 VRDRVRYHHFRDGLCSCGDYW 551
           VRD  R+HHF++G CSC +YW
Sbjct: 777 VRDGKRFHHFKNGECSCRNYW 797



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 124/511 (24%), Positives = 205/511 (40%), Gaps = 127/511 (24%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ-----------SLSPLQ---AIFY----- 75
           SS   YA+ LF++I  P   A  +LI A++            + +PL     +FY     
Sbjct: 61  SSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMIT 120

Query: 76  -YNHM--------LMASLS----RPDTFTFTFTLKACERV-KALNKCQELHGFVIRSGYE 121
            Y+HM        L  ++     +PD FTF   L A   +     +C ++HG V++ G E
Sbjct: 121 GYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIE 180

Query: 122 ----------------------------------------RCVVVSTNLMRGYAANGVIE 141
                                                   R   + T L+ GY  NG + 
Sbjct: 181 IFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLT 240

Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
            AR + D M E+  ++WN++IS Y       +AL L+ +MR   V +D  T   ++S+CA
Sbjct: 241 GAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACA 300

Query: 202 HVGALNMG------IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
             G   +G      I  + +  +  F+ S  VGN L+ +Y K G +D A  +F  M  +D
Sbjct: 301 DGGFFLLGKQVHAYILKNELNPDRDFLLS--VGNTLITLYWKYGKVDGARKIFYEMPVKD 358

Query: 256 VLSWNSMIVGYGVHGR-------------------------------GDEAISFFKQMLM 284
           +++WN+++ GY   GR                               G++A+  F QM +
Sbjct: 359 IITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKL 418

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            G+ P+   F G +  CS  G +E G +  H  +        +     ++ +Y R G +E
Sbjct: 419 DGYEPNDYAFAGAITACSVLGALENGRQ-LHAQIVHLGHDSTLSVGNAMITMYARCGIVE 477

Query: 345 KALEVINTSSPSDPVLWRTLLGSCKIH----RNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
            A  +  T    DPV W +++ +   H    + +E+ E  +K     E         L  
Sbjct: 478 AARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLK-----EGILPDRRTFLTV 532

Query: 401 IYACTKD---EEGVARTRKLIKSNGIKTTPG 428
           + AC+     EEG      ++++ GI   PG
Sbjct: 533 LSACSHAGLVEEGNRYFNSMLENYGI--APG 561



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 114/238 (47%), Gaps = 3/238 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+  F Q+       W  +I   AQ+    QA+  +N M +     P+ + F   + AC 
Sbjct: 378 AKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYE-PNDYAFAGAITACS 436

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + AL   ++LH  ++  G++  + V   ++  YA  G++EAAR++F  MP  D VSWNS
Sbjct: 437 VLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNS 496

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIACEM 219
           +I+   Q    ++A++LYE+M  E +  D  T + +LS+C+H G +  G  + + +    
Sbjct: 497 MIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENY 556

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAI 276
           G          ++D++ + G    A  V   M  +     W +++ G   HG  D  I
Sbjct: 557 GIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGI 614


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 185/562 (32%), Positives = 294/562 (52%), Gaps = 51/562 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A+ LF  + +    +WN++I  + Q+    +A+  ++ ML  S   PD FT T  L 
Sbjct: 246 MDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 305

Query: 98  ACERVKALNKCQELHGFVIR--------------SGYERC-------------------V 124
           AC  +  +   +++H +++R              S Y +                    V
Sbjct: 306 ACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNV 365

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           +  T L+ GY   G +E+AR +F  M  RD+V+W ++I  Y Q   + EA+ L+  M   
Sbjct: 366 ISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITC 425

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
               + +TL  +LS CA +  L+ G  +H  A      +S  V NA++ MYA+ G+   A
Sbjct: 426 GPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWA 485

Query: 245 FCVFSRM-RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
             +F ++  +++ ++W SMIV    HG+G+EA+  F++ML AG  PD IT++G+L  CSH
Sbjct: 486 RRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSH 545

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
            G V EG  Y+  + + + + P + HY C+VDL  RAG   +A E I    P +P  + W
Sbjct: 546 AGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIR-RMPVEPDAIAW 604

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
            +LL +C++H+N E+ E+A + L+ ++  ++G Y  +A +Y+        AR  K  K  
Sbjct: 605 GSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEK 664

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
            ++   G+SW  I +++H F  DD  HP  D +Y     +    K  G+  D  L +V  
Sbjct: 665 AVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPD--LQSVLH 722

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
              ++  E+  + HSEKLAIAFGL +TP+ T+LR++KNLR            S    R++
Sbjct: 723 DVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREI 782

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           IVRD  R+HHFRDGLCSC DYW
Sbjct: 783 IVRDATRFHHFRDGLCSCKDYW 804



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 166/393 (42%), Gaps = 73/393 (18%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  L+ A+ +F ++      +W  ++    ++    +AI     M     + P  FT T 
Sbjct: 111 SGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFT-PTQFTLTN 169

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L +C   +A    +++H FV++ G   CV V+ +++  Y   G  E A +VF+ MP R 
Sbjct: 170 VLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRS 229

Query: 155 L-------------------------------VSWNSIISCYTQASFHLEALKLYERMRF 183
           +                               VSWN++I+ Y Q     +ALKL+ RM  
Sbjct: 230 VSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLH 289

Query: 184 E-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC---- 238
           E  +  D FT+  +LS+CA++G + +G  +H          +  V NAL+  YAK     
Sbjct: 290 ESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVE 349

Query: 239 -----------------------------GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
                                        G+++SA  +F  M  RDV++W +MIVGY  +
Sbjct: 350 NARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQN 409

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           GR DEAI  F+ M+  G  P+S T   +L  C+    ++ G +  H    R  L+     
Sbjct: 410 GRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG-KQIHCRAIRSLLEQSSSV 468

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
              ++ +Y R+G    A  +       D V WR
Sbjct: 469 SNAIITMYARSGSFPWARRMF------DQVCWR 495



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 122/268 (45%), Gaps = 33/268 (12%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           R V    +L+  +A +G +  AR VF  MPERD VSW  ++    +A    EA+K    M
Sbjct: 96  RNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM 155

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
             +      FTL  +LSSCA   A  +G  +H    ++G    V V N++++MY KCG+ 
Sbjct: 156 TADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDS 215

Query: 242 DSAFCVFSR-------------------------------MRKRDVLSWNSMIVGYGVHG 270
           ++A  VF R                               M  R ++SWN+MI GY  +G
Sbjct: 216 ETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNG 275

Query: 271 RGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
              +A+  F +ML  +   PD  T   +L  C++ G V  G +  H  + R  +    + 
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIG-KQVHAYILRTEMAYNSQV 334

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSD 357
              L+  Y ++G +E A  +++ S  +D
Sbjct: 335 TNALISTYAKSGSVENARRIMDQSMETD 362



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 69/193 (35%), Gaps = 42/193 (21%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK----CGNLDSAFCVFSR- 250
           LL  C        G  +H  A + G + S Y+ N L+  Y +     G L  A  +F   
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 251 -MRKRDVLSWNS-------------------------------MIVGYGVHGRGDEAISF 278
            + +R+V +WNS                               M+VG    GR  EAI  
Sbjct: 92  PLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKT 151

Query: 279 FKQMLMAGFHPDSITFLGLL--CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
              M   GF P   T   +L  C  +  G V   V   H  V +  L   +     ++++
Sbjct: 152 LLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKV---HSFVVKLGLGSCVPVANSVLNM 208

Query: 337 YGRAGKLEKALEV 349
           YG+ G  E A  V
Sbjct: 209 YGKCGDSETATTV 221


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 187/530 (35%), Positives = 297/530 (56%), Gaps = 24/530 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A LLF+++      +WNSL+   A+     + +  +  M   S  + + FTF   + AC 
Sbjct: 99  AYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACV 158

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSW 158
             KA ++   +H   ++ G    V V   L+  Y   G +E+A  +F  MPE  + +VSW
Sbjct: 159 SEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSW 218

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218
           NSI++   Q     EA   ++ MR      D  T+V LL +C +     M   LH +   
Sbjct: 219 NSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPLGRMVEVLHGVIFT 278

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
            G  E++ +   L+++Y+K G L+++  VF  + K D ++W +M+ GY +HG G EAI F
Sbjct: 279 CGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEF 338

Query: 279 FKQMLMA-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
           F++++   G  PD +TF  LL  CSH GLV+EG  +F +M   Y ++P + HY C+VDL 
Sbjct: 339 FERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLL 398

Query: 338 GRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GR G L+ A E+I  + P +P   +W  LLG+C++HRN+++G+ A KNL+ L+ +   +Y
Sbjct: 399 GRCGLLDDAHELIK-NMPFEPNSGVWGALLGACRVHRNIDLGKEAAKNLIALDPSDPRNY 457

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           ++L+ +Y+        ++ R L+K+  +    G S+IE GN++H+FVVDD +HPD+  I+
Sbjct: 458 IMLSNMYSAAGLWNDASKVRTLMKNKVLTRNQGCSFIEHGNKIHRFVVDDYTHPDSHRIH 517

Query: 456 RKLEEIMHRAKFIGYTKD-ESLV-AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           +KLEE+M + + +G+  + ES++  V      D + K    HSEK+A+A+GL  T     
Sbjct: 518 KKLEEVMKKIQDVGFVHETESILHDVDEEVKIDMITK----HSEKIALAYGLLVTNADMP 573

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L I+KNLR            S+   R +I+RD  R+H F  GLCSCGDYW
Sbjct: 574 LVIIKNLRICRDCHNTVKFVSMVEKRTIIIRDTKRFHQFSGGLCSCGDYW 623



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 141/267 (52%), Gaps = 4/267 (1%)

Query: 108 CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ 167
           C+ +H  VI+S   R   +   L+  Y   G  + A  +FD MP++D VSWNS++S   +
Sbjct: 64  CRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAK 123

Query: 168 ASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
                E L ++ +M+ + ++ L+ FT + ++S+C    A + G ++H  A ++G V  V 
Sbjct: 124 IGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVK 183

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRM--RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
           V NALV+MY K G ++SAF +FS M   ++ ++SWNS++     +G  +EA + F  M +
Sbjct: 184 VVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRV 243

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            GF PD  T + LL  C +  L    VE  H ++    L   +     L++LY + G+L 
Sbjct: 244 NGFFPDDATMVSLLQACENFPL-GRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLN 302

Query: 345 KALEVINTSSPSDPVLWRTLLGSCKIH 371
            + +V    S  D V W  +L    +H
Sbjct: 303 NSRKVFEEISKPDKVAWTAMLAGYAMH 329



 Score = 38.5 bits (88), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           LLN Y  S    L+ ++ +F +I  P   AW +++  +A      +AI ++  ++     
Sbjct: 291 LLNLY--SKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGM 348

Query: 86  RPDTFTFTFTLKAC 99
            PD  TFT  L AC
Sbjct: 349 EPDHVTFTHLLSAC 362


>gi|297792411|ref|XP_002864090.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297309925|gb|EFH40349.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 534

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 171/424 (40%), Positives = 260/424 (61%), Gaps = 21/424 (4%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCA 201
           A+ V  N  ++++++WN +I  Y +   + EALK  + M  F D   + F+    L++CA
Sbjct: 117 AKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDFKPNKFSFASSLAACA 176

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
            +G L+   ++H +  + G   +  + +ALVD+YAKCG+++++  VF  +++ DV  WN+
Sbjct: 177 RLGDLHHAKWVHSLMIDGGIEFNAILSSALVDVYAKCGDIETSREVFCSVKRNDVSIWNA 236

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           MI G+  HG   EAI  F +M      PDSITFLGLL  CSH GL+EEG EYF +M  R+
Sbjct: 237 MITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLLEEGKEYFGLMSRRF 296

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEI 379
           +++P ++HYG +VDL GRAG++++A E+I  S P +P  V+WR+LL S +  +N E+GEI
Sbjct: 297 SIQPKLEHYGAMVDLLGRAGQVKEAYELIE-SMPIEPDVVIWRSLLSSSRTFKNPELGEI 355

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
           A++NL +   A +GDYVLL+ IY+ TK  E   + R+L+   GI+   G SW+E G  +H
Sbjct: 356 AIQNLSK---AKSGDYVLLSNIYSSTKKWESAQKVRELMTKEGIRKAKGKSWVEFGGVIH 412

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
           +F   D SH +   IY+ LE ++ + K  G+  D  LV +  S  E   E++  YHSEKL
Sbjct: 413 RFKAGDTSHIETKAIYKVLEGLIQKTKSEGFVSDTDLVLMDVSEEEK--EENLNYHSEKL 470

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           A+A+ +  +  GT +RI KN+R            S   +R + +RDR+R+H F DGLCSC
Sbjct: 471 ALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVITMRDRIRFHRFEDGLCSC 530

Query: 548 GDYW 551
            DYW
Sbjct: 531 KDYW 534



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 112/225 (49%), Gaps = 2/225 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +     +     WN +I  + +++   +A+    +ML  S  +P+ F+F  +L AC 
Sbjct: 117 AKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDFKPNKFSFASSLAACA 176

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           R+  L+  + +H  +I  G E   ++S+ L+  YA  G IE +R VF ++   D+  WN+
Sbjct: 177 RLGDLHHAKWVHSLMIDGGIEFNAILSSALVDVYAKCGDIETSREVFCSVKRNDVSIWNA 236

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEM 219
           +I+ +       EA++++  M  E V  D  T + LL++C+H G L  G  +   ++   
Sbjct: 237 MITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLLEEGKEYFGLMSRRF 296

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
                +    A+VD+  + G +  A+ +   M  + DV+ W S++
Sbjct: 297 SIQPKLEHYGAMVDLLGRAGQVKEAYELIESMPIEPDVVIWRSLL 341


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 194/528 (36%), Positives = 295/528 (55%), Gaps = 23/528 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQS--LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           A L+F+ + +    +WN++I  + Q+  +    A+F     L+ S S  D+ T    ++ 
Sbjct: 300 AALVFDSMCSRSLISWNAMISGYVQNGMIPESYALF---RRLVQSGSGFDSGTLVSLIRG 356

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
           C +   L   + LH  +IR   E  +V+ST ++  Y+  G I+ A  VF  M ++++++W
Sbjct: 357 CSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITW 416

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218
            +++   +Q  +  +ALKL+ +M+ E V  +  TLV L+  CAH+G+L  G  +H     
Sbjct: 417 TAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIR 476

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFS-RMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            G+     + +AL+DMYAKCG + SA  +F+     +DV+  NSMI+GYG+HG G  A+ 
Sbjct: 477 HGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALG 536

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            + +M+     P+  TF+ LL  CSH GLVEEG   FH M   ++++P  KHY CLVDL+
Sbjct: 537 VYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLH 596

Query: 338 GRAGKLEKALEVINTS--SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
            RAG+LE+A E++      PS  VL   LL  C+ H+N  +G      L+ L+  ++G Y
Sbjct: 597 SRAGRLEEADELVKQMPFQPSTDVL-EALLSGCRTHKNTNMGIQIADRLISLDYLNSGIY 655

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V+L+ IYA  +  E V   R L++  G+K  PG+S IE+GN+V+ F   D SHP    IY
Sbjct: 656 VMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIY 715

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
           + LE +    +  GY  D S V      +E    K    HSE+LAIAFGL +TP G+ ++
Sbjct: 716 QLLENLRLEVEAEGYIPDTSCVL--RDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIK 773

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           I KNLR            S    R++IVRD  R+HHF +G CSC D+W
Sbjct: 774 ITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 180/369 (48%), Gaps = 7/369 (1%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L +A+ +F+Q   P+T   N++I  F ++   ++    +  M    +   +++T  F LK
Sbjct: 95  LGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDI-EINSYTCMFALK 153

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC  +       E+    +R G+   + V ++++      G +  A+ VFD MPE+D+V 
Sbjct: 154 ACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVC 213

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WNSII  Y Q     E+++++  M    +     T+  LL +C   G   +G+  H    
Sbjct: 214 WNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVL 273

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
            +G    V+V  +LVDMY+  G+  SA  VF  M  R ++SWN+MI GY  +G   E+ +
Sbjct: 274 ALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYA 333

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F++++ +G   DS T + L+ GCS    +E G    H  + R  L+  +     +VD+Y
Sbjct: 334 LFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENG-RILHSCIIRKELESHLVLSTAIVDMY 392

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDY 395
            + G +++A  V       + + W  +L    + +N    E A+K   Q+  E  +A   
Sbjct: 393 SKCGAIKQATIVFGRMGKKNVITWTAML--VGLSQN-GYAEDALKLFCQMQEEKVAANSV 449

Query: 396 VLLATIYAC 404
            L++ ++ C
Sbjct: 450 TLVSLVHCC 458



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 157/318 (49%), Gaps = 8/318 (2%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ AQ +F+ +       WNS+I  + Q     ++I  +  M+   L RP   T    LK
Sbjct: 196 LADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGL-RPSPVTMANLLK 254

Query: 98  ACER--VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           AC +  +K +  C   H +V+  G    V V T+L+  Y+  G   +A  VFD+M  R L
Sbjct: 255 ACGQSGLKKVGMCA--HSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSL 312

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           +SWN++IS Y Q     E+  L+ R+     G D  TLV L+  C+    L  G  LH  
Sbjct: 313 ISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSC 372

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
                    + +  A+VDMY+KCG +  A  VF RM K++V++W +M+VG   +G  ++A
Sbjct: 373 IIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDA 432

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG-VEYFHMMVSRYNLKPGIKHYGCLV 334
           +  F QM       +S+T + L+  C+H G + +G   + H +   Y     I     L+
Sbjct: 433 LKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVIT--SALI 490

Query: 335 DLYGRAGKLEKALEVINT 352
           D+Y + GK+  A ++ N 
Sbjct: 491 DMYAKCGKIHSAEKLFNN 508



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 9/261 (3%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           + +H  +I++       ++  L+R Y+  G +  AR+VFD     +    N++I+ + + 
Sbjct: 64  KSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRN 123

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
             H+E  +L+  M   D+ ++ +T +  L +C  +    +G+ + R A   GF   +YVG
Sbjct: 124 QQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVG 183

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           +++V+   K G L  A  VF  M ++DV+ WNS+I GY   G   E+I  F +M+  G  
Sbjct: 184 SSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLR 243

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH----YGCLVDLYGRAGKLE 344
           P  +T   LL  C   GL + G     M    Y L  G+ +       LVD+Y   G   
Sbjct: 244 PSPVTMANLLKACGQSGLKKVG-----MCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTG 298

Query: 345 KALEVINTSSPSDPVLWRTLL 365
            A  V ++      + W  ++
Sbjct: 299 SAALVFDSMCSRSLISWNAMI 319


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 177/521 (33%), Positives = 283/521 (54%), Gaps = 16/521 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LF+++      ++N +I A+A +      +  +  M      R     +   L     + 
Sbjct: 293 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDR-QVLPYATMLSVAGSLP 351

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            ++  +++H  ++  G     ++   L+  Y+  G+++AA+S F N  E+  +SW ++I+
Sbjct: 352 DVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALIT 411

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y Q   H EAL+L+  MR   +  D  T   ++ + + +  + +G  LH      G+  
Sbjct: 412 GYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKS 471

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           SV+ G+ LVDMYAKCG LD A   F  M +R+ +SWN++I  Y  +G    AI  F+ ML
Sbjct: 472 SVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGML 531

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             GF+PDS+TFL +L  CSH GL +E ++YFH+M  +Y++ P  +HY C++D  GR G  
Sbjct: 532 HCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCF 591

Query: 344 EKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
            +  + ++     +DP++W ++L SC+IH N E+  +A   L  +E   A  YV+L+ IY
Sbjct: 592 SQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIY 651

Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
           A     E  A  +K+++  G++   G+SW+EI  +++ F  +D + P  D I  +L+ + 
Sbjct: 652 ARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLY 711

Query: 463 HRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR- 521
                 GY  D +  A+     E  LE S  YHSE+LAIAF L  TP GT +RI+KNL  
Sbjct: 712 KEMDKQGYKPDIT-CALHMVDHELKLE-SLKYHSERLAIAFALMNTPAGTPIRIMKNLTA 769

Query: 522 -----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                      S   +RD+IVRD  R+HHF+DG+CSCGDYW
Sbjct: 770 CLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 149/337 (44%), Gaps = 11/337 (3%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A S S  L  AQ LF    +     W  ++RA A +     A+  +  ML   +  PD  
Sbjct: 83  AYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI-PDRV 141

Query: 91  TFTFTLKACERVKALNKC--QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFD 148
           T T  L        L  C    LH F I+ G +  V V   L+  Y  +G++ AAR VF 
Sbjct: 142 TVTTVLN-------LPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFL 194

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            M ++D V++N+++   ++   H +AL+L+  MR   +    FT   +L+  A +  L +
Sbjct: 195 EMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLL 254

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G  +H +      V +V+V N+L+D Y+KC  LD    +F  M +RD +S+N +I  Y  
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAW 314

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +      +  F++M   GF    + +  +L        V  G +  H  +    L     
Sbjct: 315 NQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQ-IHAQLVLLGLASEDL 373

Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
               L+D+Y + G L+ A    +  S    + W  L+
Sbjct: 374 LGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALI 410



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 17/249 (6%)

Query: 125 VVSTNL-MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           + S NL +  Y+++G + AA+ +F + P R+  +W  ++  +  A    +AL L+  M  
Sbjct: 74  IFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLG 133

Query: 184 EDVGLDGFTLVCLLS--SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           E V  D  T+  +L+   C           LH  A + G    V+V N L+D Y K G L
Sbjct: 134 EGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCKHGLL 186

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL--- 298
            +A  VF  M  +D +++N+M++G    G   +A+  F  M  AG      TF  +L   
Sbjct: 187 AAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVA 246

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
            G +H  L  +     H +V R      +     L+D Y +   L+    + +     D 
Sbjct: 247 AGMAHLLLGHQ----VHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDN 302

Query: 359 VLWRTLLGS 367
           V +  ++ +
Sbjct: 303 VSYNVIIAA 311



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 10/148 (6%)

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
           ++++  N ++  Y+  G+L +A  +F     R+  +W  M+  +   GR  +A+S F+ M
Sbjct: 72  KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 131

Query: 283 LMAGFHPDSITFLGL--LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           L  G  PD +T   +  L GC+        V   H    ++ L   +     L+D Y + 
Sbjct: 132 LGEGVIPDRVTVTTVLNLPGCT--------VPSLHPFAIKFGLDTHVFVCNTLLDAYCKH 183

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSC 368
           G L  A  V       D V +  ++  C
Sbjct: 184 GLLAAARRVFLEMHDKDAVTYNAMMMGC 211


>gi|41469322|gb|AAS07178.1| putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
 gi|108709518|gb|ABF97313.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 654

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 189/529 (35%), Positives = 280/529 (52%), Gaps = 20/529 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM-ASLSRPDTFTFTFTLKAC 99
           A+ +F+ +       WN+LI+ +AQ+    +AI  +  M    S   PD +TF   L   
Sbjct: 128 ARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLSGI 187

Query: 100 ERVKALNKCQEL----HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
            R     +  EL    H  VI++G ER   V  +L+  YAA   +E A+  FD +   D 
Sbjct: 188 GREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDP 247

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           + W+S+IS Y        AL ++  M  +D+    F    + S C  +G L MG  +H  
Sbjct: 248 IVWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAH 307

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           + +    +   + NAL+ MY+ CG ++ A  VFS     +V+S+NSMI   G HG   EA
Sbjct: 308 SLKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEA 367

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F+QM  AG  PD +T L L+   +H GLV EG++ F+ MV    +KP  +HY C+VD
Sbjct: 368 LEHFRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVD 427

Query: 336 LYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           +  R+G++ KA++ IN     ++  LWR +LG+C  HR++E G+   + L ++E   A +
Sbjct: 428 MLARSGEIGKAMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATN 487

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           Y+LL  IYA         + R L+   G+     +SWIE+G + ++F VDD+SHP +  I
Sbjct: 488 YILLGNIYARLGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREI 547

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           YR L+ ++   K  GY  D S  A   +   D  E+S  YH EKLA AFG    P G +L
Sbjct: 548 YRNLDRLISTIKVAGYVPDISFAA--HNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGTL 605

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI+KNLR            S+   R++I+RD  R+HHF  G CSCGDYW
Sbjct: 606 RIMKNLRVCGDCHCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDYW 654



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 144/328 (43%), Gaps = 33/328 (10%)

Query: 50  NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ 109
           +P  +A+++L++A + S SP +              RP +      L A   V+      
Sbjct: 61  DPTPRAFSALLKAASSSASPPR--------------RPSSLGLGAQLHAQAVVR------ 100

Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
              GF+   G +   +++T ++  YA+    + AR VFD MP R+ V+WN++I  Y QA 
Sbjct: 101 ---GFL---GGDDSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAG 154

Query: 170 FHLEALKLYERMRFED--VGLDGFTLVCLLSSCAHVGA----LNMGIFLHRIACEMGFVE 223
              EA+ L+  M+ E   V  D +T   LLS     G     L +G  LH    + G   
Sbjct: 155 RREEAILLFRDMKREGSHVAPDRYTFPALLSGIGREGGSGRTLELGGALHAHVIKAGLER 214

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
             +VG +LV +YA    L+ A   F ++   D + W+SMI  Y      + A+  F  ML
Sbjct: 215 DPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFFNML 274

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
                P    +  +   C   G++E G +  H    + N +     +  L+ +Y   G +
Sbjct: 275 CQDIKPTQFVYSTVFSVCGRMGILEMGKQ-VHAHSLKSNTEKDAAMFNALLTMYSDCGCI 333

Query: 344 EKALEVINTSSPSDPVLWRTLLGSCKIH 371
             A +V +++   + + + +++ +   H
Sbjct: 334 NDAQKVFSSNDCVNVISYNSMISALGQH 361



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 115/230 (50%), Gaps = 4/230 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA     +L  A++ F+Q+ +     W+S+I A+        A+  + +ML  
Sbjct: 219 GASLVSLYA--ARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFFNMLCQ 276

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            + +P  F ++     C R+  L   +++H   ++S  E+   +   L+  Y+  G I  
Sbjct: 277 DI-KPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCIND 335

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A+ VF +    +++S+NS+IS   Q  +  EAL+ + +M+F  +  D  TL+ L+SS  H
Sbjct: 336 AQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLMPDEVTLLNLISSFNH 395

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNA-LVDMYAKCGNLDSAFCVFSRM 251
            G ++ G+ +     ++  ++ +Y   A +VDM A+ G +  A    + M
Sbjct: 396 AGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGKAMKTINEM 445


>gi|125544635|gb|EAY90774.1| hypothetical protein OsI_12377 [Oryza sativa Indica Group]
          Length = 653

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 189/529 (35%), Positives = 280/529 (52%), Gaps = 20/529 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM-ASLSRPDTFTFTFTLKAC 99
           A+ +F+ +       WN+LI+ +AQ+    +AI  +  M    S   PD +TF   L   
Sbjct: 127 ARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLSGI 186

Query: 100 ERVKALNKCQEL----HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
            R     +  EL    H  VI++G ER   V  +L+  YAA   +E A+  FD +   D 
Sbjct: 187 GREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDP 246

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           + W+S+IS Y        AL ++  M  +D+    F    + S C  +G L MG  +H  
Sbjct: 247 IVWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAH 306

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           + +    +   + NAL+ MY+ CG ++ A  VFS     +V+S+NSMI   G HG   EA
Sbjct: 307 SLKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEA 366

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F+QM  AG  PD +T L L+   +H GLV EG++ F+ MV    +KP  +HY C+VD
Sbjct: 367 LEHFRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVD 426

Query: 336 LYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
           +  R+G++ KA++ IN     ++  LWR +LG+C  HR++E G+   + L ++E   A +
Sbjct: 427 MLARSGEIGKAMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATN 486

Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
           Y+LL  IYA         + R L+   G+     +SWIE+G + ++F VDD+SHP +  I
Sbjct: 487 YILLGNIYARLGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREI 546

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
           YR L+ ++   K  GY  D S  A   +   D  E+S  YH EKLA AFG    P G +L
Sbjct: 547 YRNLDRLISTIKVAGYVPDISFAA--HNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGTL 604

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           RI+KNLR            S+   R++I+RD  R+HHF  G CSCGDYW
Sbjct: 605 RIMKNLRVCGDCHCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDYW 653



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 144/329 (43%), Gaps = 33/329 (10%)

Query: 49  QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKC 108
            +P  +A+++L++A + S SP +              RP +      L A   V+     
Sbjct: 59  DDPTPRAFSALLKAASSSASPPR--------------RPSSLGLGAQLHAQAVVR----- 99

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
               GF+   G +   +++T ++  YA+    + AR VFD MP R+ V+WN++I  Y QA
Sbjct: 100 ----GFL---GGDDSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQA 152

Query: 169 SFHLEALKLYERMRFED--VGLDGFTLVCLLSSCAHVGA----LNMGIFLHRIACEMGFV 222
               EA+ L+  M+ E   V  D +T   LLS     G     L +G  LH    + G  
Sbjct: 153 GRREEAILLFRDMKREGSHVAPDRYTFPALLSGIGREGGSGRTLELGGALHAHVIKAGLE 212

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
              +VG +LV +YA    L+ A   F ++   D + W+SMI  Y      + A+  F  M
Sbjct: 213 RDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFFNM 272

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
           L     P    +  +   C   G++E G +  H    + N +     +  L+ +Y   G 
Sbjct: 273 LCQDIKPTQFVYSTVFSVCGRMGILEMGKQ-VHAHSLKSNTEKDAAMFNALLTMYSDCGC 331

Query: 343 LEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           +  A +V +++   + + + +++ +   H
Sbjct: 332 INDAQKVFSSNDCVNVISYNSMISALGQH 360



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 115/230 (50%), Gaps = 4/230 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA     +L  A++ F+Q+ +     W+S+I A+        A+  + +ML  
Sbjct: 218 GASLVSLYA--ARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFFNMLCQ 275

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            + +P  F ++     C R+  L   +++H   ++S  E+   +   L+  Y+  G I  
Sbjct: 276 DI-KPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCIND 334

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A+ VF +    +++S+NS+IS   Q  +  EAL+ + +M+F  +  D  TL+ L+SS  H
Sbjct: 335 AQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLMPDEVTLLNLISSFNH 394

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNA-LVDMYAKCGNLDSAFCVFSRM 251
            G ++ G+ +     ++  ++ +Y   A +VDM A+ G +  A    + M
Sbjct: 395 AGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGKAMKTINEM 444


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 192/539 (35%), Positives = 295/539 (54%), Gaps = 36/539 (6%)

Query: 44  LFNQIQNPQTQ----AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
           LF +I+  + +     W+++I  +AQ     +A+  +  M +   S P+  T    L  C
Sbjct: 319 LFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCG-SEPNVVTLVSLLSGC 377

Query: 100 ERVKALNKCQELHGFVIR-------SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
                L   +E H   I+       +     ++V   L+  Y+     +AAR++FD +P 
Sbjct: 378 ALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPP 437

Query: 153 RD--LVSWNSIISCYTQASFHLEALKLYERMRFED--VGLDGFTLVCLLSSCAHVGALNM 208
           +D  +V+W  +I    Q     EAL+L+ +M   D  V  + FT+ C L +CA +GAL  
Sbjct: 438 KDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRF 497

Query: 209 GIFLHRIACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           G  +H       F  + ++V N L+DMY+K G++D+A  VF  M +R+ +SW S++ GYG
Sbjct: 498 GRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYG 557

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           +HGRG+EA+  F +M   G  PD +TF+ +L  CSH G+V++G+ YF+ M   + + PG 
Sbjct: 558 MHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGA 617

Query: 328 KHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           +HY C+VDL  RAG+L++A+E+I        P +W  LL +C+++ NVE+GE A   L++
Sbjct: 618 EHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLE 677

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
           LE+ + G Y LL+ IYA  +  + VAR R L+K+ GIK  PG SW++       F   D 
Sbjct: 678 LESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDW 737

Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
           SHP +  IY  L ++M R K +GY  D   +L  V      D L +    HSEKLA+A+G
Sbjct: 738 SHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSE----HSEKLALAYG 793

Query: 505 LATTPDGTSLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + TT  G  +RI KNLR+                 ++IVRD  R+HHF++G CSC  YW
Sbjct: 794 ILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/364 (35%), Positives = 178/364 (48%), Gaps = 50/364 (13%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WN LIR  +  L  L+ +      +     RPD +TF F LKAC  + +      +H  V
Sbjct: 94  WNQLIRR-SVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVV 152

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER---DLVSWNSIISCYTQASFHL 172
             SG+E  V V   L+  Y   G  E AR VFD M ER   DLVSWNSI++ Y Q    +
Sbjct: 153 FASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSI 212

Query: 173 EALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
            A+K++ERM  ED+G+  D  +LV +L +CA VGA + G  +H  A   G  E V+VGNA
Sbjct: 213 RAMKMFERMT-EDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA 271

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD----------------- 273
           +VDMYAKCG ++ A  VF RM+ +DV+SWN+M+ GY   GR D                 
Sbjct: 272 VVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELN 331

Query: 274 ------------------EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YF 314
                             EA+  F+QM + G  P+ +T + LL GC+  G +  G E + 
Sbjct: 332 VVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHC 391

Query: 315 HMMVSRYNL---KPG--IKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGS 367
           H +    NL    PG  +     L+D+Y +    + A  + +   P D   V W  L+G 
Sbjct: 392 HAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGG 451

Query: 368 CKIH 371
              H
Sbjct: 452 NAQH 455



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 195/426 (45%), Gaps = 58/426 (13%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WNS++ A+ Q    ++A+  +  M      RPD  +    L AC  V A ++ +++HG+
Sbjct: 197 SWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGY 256

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
            +RSG    V V   ++  YA  G++E A  VF+ M  +D+VSWN++++ Y+Q     +A
Sbjct: 257 ALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDA 316

Query: 175 LKLYERMRFEDVGLD----------------GF-------------------TLVCLLSS 199
           L L+E++R E + L+                GF                   TLV LLS 
Sbjct: 317 LGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSG 376

Query: 200 CAHVGALNMG--IFLHRIACEMGFVES-----VYVGNALVDMYAKCGNLDSAFCVFSRMR 252
           CA  G L  G     H I   +   E+     + V NAL+DMY+KC +  +A  +F  + 
Sbjct: 377 CALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIP 436

Query: 253 KRD--VLSWNSMIVGYGVHGRGDEAISFFKQMLMAG--FHPDSITFLGLLCGCSHQGLVE 308
            +D  V++W  +I G   HG  +EA+  F QML       P++ T    L  C+  G + 
Sbjct: 437 PKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALR 496

Query: 309 EGVEYFHMMVSRYNLKPGIKHYG-CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
            G +  H  V R   +  +     CL+D+Y ++G ++ A  V +     + V W +L+  
Sbjct: 497 FGRQ-IHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTG 555

Query: 368 CKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACTKD---EEGVARTRKLIKSNG 422
             +H     GE A++   +++           +  +YAC+     ++G+     + K  G
Sbjct: 556 YGMHGR---GEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFG 612

Query: 423 IKTTPG 428
           +   PG
Sbjct: 613 V--VPG 616


>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 194/567 (34%), Positives = 307/567 (54%), Gaps = 37/567 (6%)

Query: 4   KKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQ-AWNSLIRA 62
           K HA  +   + +  H +   +L  S   +  ++  YA  +  ++  P    ++N++I+ 
Sbjct: 6   KLHATLIKTGQHQNPHSLRPFFLTCS---NYPAAARYAATVLLRLPTPPDPFSYNTIIK- 61

Query: 63  FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER 122
               +SP  AI  ++HM   S+   D FTF   LK        +        + + G++ 
Sbjct: 62  ---HVSPTGAISLFSHMHRNSVPF-DHFTFPLILKHHHHHLLHSL-------IFKLGFDT 110

Query: 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182
            + V   L+  Y + G ++ A  +FD M  RD+VSW+++ISC  + +   EAL ++++M+
Sbjct: 111 NIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVFQQMQ 170

Query: 183 F--EDVG--LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
               D+   LD   ++ ++S+ + +G + +GI++H     MG V +V +G AL++MY++C
Sbjct: 171 MGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLGTALINMYSRC 230

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G +D +  VF  M +R+V++W ++I G  VHGR  EA+  F +M  +G  PD   F+G+L
Sbjct: 231 GLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPDGALFIGVL 290

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
             CSH GLVE+G   F  M   + +KP ++HYGC+VDL GRAG + +A + +    P  P
Sbjct: 291 VACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDFVE-EMPLKP 349

Query: 359 --VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
             V+WRTLLG+C  H ++ + E A + +++L+    GDYVLL+  Y    +  G A  R 
Sbjct: 350 NSVIWRTLLGACVNHNHLGLAEKARERIIELDPYHDGDYVLLSNAYGRVGNWGGKAGLRN 409

Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
            +K N I   PG S++ I   VH+FV  D  HP  + I + L  I+   K  GYT + S 
Sbjct: 410 SMKQNRIVKEPGLSFVHIDQVVHEFVSGDHVHPQWEEITKFLASIIDTVKLGGYTPNTSS 469

Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
           V       E   E    YHSEKLA+AF L    D  ++R++KNLR            S  
Sbjct: 470 VLHDIQDEEK--EHCLGYHSEKLAVAFVLLYHRDRRTIRVIKNLRICYDCHDFMKHASGI 527

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + RD+I+RDR R+HHF  GLCSC D+W
Sbjct: 528 FDRDIIIRDRNRFHHFSKGLCSCQDFW 554


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 179/530 (33%), Positives = 299/530 (56%), Gaps = 20/530 (3%)

Query: 38  LSYAQLLFNQIQ--NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           ++ A+ +F+QIQ  N    +WN +I A+ Q+    +A+  +  M +  +   +  T    
Sbjct: 75  IAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVI-ANQVTLINA 133

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           + AC  + +  + + +H   +    E   +V T+L+  +     ++AAR+VFD++P ++L
Sbjct: 134 IDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNL 193

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           V+WN++++ Y+Q     +A++++  M  E V  D  T + ++ +CA + A   G  +H  
Sbjct: 194 VTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDD 253

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
               G    V +G A++  Y KCG LD+A  +F  + K++ ++W++++  Y  +G   EA
Sbjct: 254 ITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEA 313

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           I  + +M+  G   + ITFLGLL  CSH G   +GV+YF  M+  + + P  +HY  L+D
Sbjct: 314 IELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLID 373

Query: 336 LYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           L GR+G+L+ + ++IN S P +P    W  LLG+C++H +V+ G    + + +L+   +G
Sbjct: 374 LLGRSGQLQLSEDLIN-SMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSG 432

Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
            Y+LL+ +Y+ T   +   RTRK ++  GI   PG S IE+ ++VH+F+   K HP    
Sbjct: 433 PYILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGR 492

Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
           I+ ++E +  R K  GY  D  + AV     E+  E+   YHSE+LAIAFGL +TP GT+
Sbjct: 493 IHAEIERLKARVKEAGYVAD--VRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTA 550

Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           L IVKNLR            S    R ++VRD +R+HHF +G CSCGDYW
Sbjct: 551 LHIVKNLRVCFDCHAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 149/284 (52%), Gaps = 3/284 (1%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           R +  T+   LK C   KAL + + +H  +++ GY    +++  L+  Y   G I  ARS
Sbjct: 21  REEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARS 80

Query: 146 VFDNMPER--DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           VFD + E+  D++SWN II  YTQ     EAL L++ M  E V  +  TL+  + +CA +
Sbjct: 81  VFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASL 140

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
            +   G  +H IA +        VG +LV+M+ KC N+D+A  VF  + ++++++WN+M+
Sbjct: 141 PSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMV 200

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
             Y  + +  +AI  F+ M + G  PD++TFL ++  C+      EG    H  ++   +
Sbjct: 201 AVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEG-RMVHDDITASGI 259

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
              +     ++  YG+ G+L+ A  + ++    + V W  +L +
Sbjct: 260 PMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAA 303


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 167/476 (35%), Positives = 281/476 (59%), Gaps = 19/476 (3%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T+    + C  +K +   +++H  +++S  +  V + ++++  Y   G + + R+ FD +
Sbjct: 226 TYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRL 285

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
             R++VSW SII+ Y Q  F  EAL L+ +M  + +  + +T+  L +S A + AL +G 
Sbjct: 286 QSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGD 345

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            LH  A + G   +V VGNAL+ MY K G++ +A  VFS M   ++++WN++I G+  HG
Sbjct: 346 QLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHG 405

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
            G EA+S F+ M+  G  P+ +TF+G++  C+H  LV+EG  YF+ ++ ++ + PG++HY
Sbjct: 406 LGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHY 465

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
            C+V L  R+G+L++A   + +   + D V WRTLL +C +H++ + G    + L+QLE 
Sbjct: 466 TCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEP 525

Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
              G Y+LL+ ++A  +  + V   RKL++   +K  PG SW+EI N  H F  +D  HP
Sbjct: 526 RDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHP 585

Query: 450 DADMIYRKLEEIMHRAKFIGYTK--DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLAT 507
           +A++IY  +++++ + + +GY    D  L  +      D L    +YHSEKLA+A+GL  
Sbjct: 586 EANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNL----SYHSEKLAVAYGLMK 641

Query: 508 TPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           TP G  + ++KNLR            S   +R ++VRD  R+HHF++G CSCGDYW
Sbjct: 642 TPSGAPITVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 182/396 (45%), Gaps = 12/396 (3%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +S A+ LF+ +      +W++L+  + Q+ +PL+    +  M++     P+ +     + 
Sbjct: 73  VSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAIS 132

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           +C+  +   + ++ HG+ ++SG E    V   L++ Y+    + AA  +   +P  D+  
Sbjct: 133 SCDS-QMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFC 191

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           +N +++   Q +   EA+ + + +  E +  +  T V +   CA +  + +G  +H    
Sbjct: 192 YNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQML 251

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +      VY+G++++DMY KCGN+ S    F R++ R+V+SW S+I  Y  +   +EA++
Sbjct: 252 KSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALN 311

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M +    P+  T   L    +    +  G +  H    +  LK  +     L+ +Y
Sbjct: 312 LFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLG-DQLHARAEKSGLKGNVMVGNALIIMY 370

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA-GDYV 396
            ++G +  A  V +  +  + + W  ++     H +  +G+ A+     + A     +YV
Sbjct: 371 FKSGDILAAQSVFSNMTCCNIITWNAIITG---HSHHGLGKEALSMFQDMMATGERPNYV 427

Query: 397 -LLATIYACTK---DEEGVARTRKLIKSNGIKTTPG 428
             +  I AC      +EG      L+K    +  PG
Sbjct: 428 TFIGVILACAHLKLVDEGFYYFNHLMKQ--FRIVPG 461



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 116/241 (48%), Gaps = 3/241 (1%)

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED-V 186
            +L+  Y     +  AR +FD+MP R++VSW+++++ Y Q    LE  +L+++M  +D +
Sbjct: 61  NSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNI 120

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             + + +   +SSC     +  G   H  A + G     YV NAL+ +Y+KC ++ +A  
Sbjct: 121 FPNEYVIATAISSCDSQMYVE-GKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQ 179

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +   +   D+  +N ++ G   H    EA+   K ++  G   ++ T++ +   C+    
Sbjct: 180 ILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKD 239

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           +  G +  H  + + ++   +     ++D+YG+ G +       +     + V W +++ 
Sbjct: 240 ITLGKQ-VHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIA 298

Query: 367 S 367
           +
Sbjct: 299 A 299



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 115/234 (49%), Gaps = 3/234 (1%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
            F+++Q+    +W S+I A+ Q+    +A+  ++ M +  +  P+ +T      +   + 
Sbjct: 281 FFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIP-PNEYTMAVLFNSAAGLS 339

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
           AL    +LH    +SG +  V+V   L+  Y  +G I AA+SVF NM   ++++WN+II+
Sbjct: 340 ALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIIT 399

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEMGFV 222
            ++      EAL +++ M       +  T + ++ +CAH+  ++ G  + + +  +   V
Sbjct: 400 GHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIV 459

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVF-SRMRKRDVLSWNSMIVGYGVHGRGDEA 275
             +     +V + ++ G LD A     S     DV+SW +++    VH   D+ 
Sbjct: 460 PGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKG 513


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 185/529 (34%), Positives = 293/529 (55%), Gaps = 28/529 (5%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ LF++++      W +++  +A++     A       L   +   +  ++T  L 
Sbjct: 192 LDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVA-----RKLFEVMPERNEVSWTAMLM 246

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
              +   + +  EL      +   + +V    ++  +   G +  AR +F+ M ERD  +
Sbjct: 247 GYTQSGRMKEAFEL----FEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGT 302

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++I  + +    LEAL L+ RM+ E V L+  +++ +LS CA + +L+ G  +H    
Sbjct: 303 WNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLV 362

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
              F + +YV + L+ MY KCG+L  A  +F+R   +DV+ WNSMI GY  HG G+EA++
Sbjct: 363 RSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALN 422

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F  M  +G  PD +TF+G+L  CS+ G V+EG E F  M   Y ++PGI+HY C+VDL 
Sbjct: 423 VFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLL 482

Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GRAG++++A+E++    P +P  ++W  LLG+C+ H  +++ E+A++ L +LE  +AG Y
Sbjct: 483 GRAGRVDEAMELVE-KMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPY 541

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV-VDDKSHPDADMI 454
           VLL+ +YA       V   RK I    IK  PG SWIE+  +VH F   D KSHP+  MI
Sbjct: 542 VLLSHMYATKGRWRDVEVLRKKINRRVIK-FPGCSWIEVEKKVHMFTGGDSKSHPEQHMI 600

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
            + LE++    +  GY  D S V       E     S  YHSE+LA+A+GL   P+G  +
Sbjct: 601 TQMLEKLSGFLREAGYCPDGSFVLHDVDEEEK--THSLGYHSERLAVAYGLLKVPEGMPI 658

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++KNLR            +    R++I+RD  R+HHF+DG CSC D+W
Sbjct: 659 RVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 136/327 (41%), Gaps = 59/327 (18%)

Query: 41  AQLLFNQIQNPQ--TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           A+ +F+    PQ    +WN+++ A+ +S  P  A+  ++ M       P   T +F    
Sbjct: 38  ARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQM-------PQRNTVSFN--- 87

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
                                          ++ GY  NG++  AR VFD MPER++VSW
Sbjct: 88  ------------------------------GMISGYVKNGMVADARKVFDVMPERNVVSW 117

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218
            S++  Y Q     EA KL+  M   +V     +   ++        ++    L  +  E
Sbjct: 118 TSMVRGYVQEGMVEEAEKLFWEMPRRNV----VSWTVMIGGLLKESRIDDAKKLFDMIPE 173

Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
               + V V   ++  Y + G LD A  +F  M+ R+V +W +M+ GY  +GR D A   
Sbjct: 174 ----KDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKL 229

Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
           F+ M       + +++  +L G +  G ++E  E F  M  ++     I     ++  +G
Sbjct: 230 FEVMP----ERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKW-----IVACNEMILQFG 280

Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL 365
            AG++ +A  +       D   W  ++
Sbjct: 281 LAGEMHRARMMFEGMKERDEGTWNAMI 307



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 115/234 (49%), Gaps = 7/234 (2%)

Query: 34  VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM--ASLSRPDTFT 91
           ++  +  A+++F  ++      WN++I+ F +    L+A+  +  M     +L+ P   +
Sbjct: 281 LAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMIS 340

Query: 92  FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
               L  C  + +L+  +++H  ++RS +++ + V++ L+  Y   G +  A+ +F+   
Sbjct: 341 ---VLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFL 397

Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI- 210
            +D+V WNS+I+ Y+Q     EAL ++  M    V  D  T + +LS+C++ G +  G  
Sbjct: 398 FKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFE 457

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
               + C       +     +VD+  + G +D A  +  +M  + D + W +++
Sbjct: 458 IFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALL 511



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 111/247 (44%), Gaps = 21/247 (8%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDN--MPERDLVSWNSIISCYTQASFHLEALKLYE 179
           R +  +T+ +  Y   G I  AR VFDN  +P+R + SWN+++S Y ++    +AL L++
Sbjct: 17  RSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFD 76

Query: 180 RM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
           +M +   V  +G     ++S     G +     +  +  E     +V    ++V  Y + 
Sbjct: 77  QMPQRNTVSFNG-----MISGYVKNGMVADARKVFDVMPE----RNVVSWTSMVRGYVQE 127

Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           G ++ A  +F  M +R+V+SW  MI G     R D+A   F  +       D +    ++
Sbjct: 128 GMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIP----EKDVVVVTNMI 183

Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
            G    G ++E  E F  M  R      +  +  +V  Y + G+++ A ++       + 
Sbjct: 184 GGYCQVGRLDEARELFDEMKVR-----NVFTWTTMVSGYAKNGRVDVARKLFEVMPERNE 238

Query: 359 VLWRTLL 365
           V W  +L
Sbjct: 239 VSWTAML 245



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           NA+V  Y +      A  +F +M +R+ +S+N MI GY  +G   +A   F  M      
Sbjct: 56  NAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMP----E 111

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
            + +++  ++ G   +G+VEE  + F  M  R      +  +  ++    +  +++ A +
Sbjct: 112 RNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRR-----NVVSWTVMIGGLLKESRIDDAKK 166

Query: 349 VINTSSPSDPVLWRTLLGS-CKIHRNVEIGEI 379
           + +     D V+   ++G  C++ R  E  E+
Sbjct: 167 LFDMIPEKDVVVVTNMIGGYCQVGRLDEAREL 198


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  330 bits (847), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 195/546 (35%), Positives = 283/546 (51%), Gaps = 53/546 (9%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           AWN++I  +       +A      M    + + D +T+T  + A       N  +++H +
Sbjct: 241 AWNAMISGYVHRGFYEEAFDLLRRMHSLGI-QLDEYTYTSVISAASNAGLFNIGRQVHAY 299

Query: 115 VIRSGYERC--VVVSTN--LMRGYAANGVIEAARSVFDNMPERDLVSWNSI--------- 161
           V+R+  +     V+S N  L+  Y   G +  AR VFD MP +DLVSWN+I         
Sbjct: 300 VLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARR 359

Query: 162 ----------------------ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
                                 IS   Q  F  E LKL+ +M+ E +    +     ++S
Sbjct: 360 IEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIAS 419

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           C+ +G+L+ G  LH    ++G   S+ VGNAL+ MY++CG +++A  VF  M   D +SW
Sbjct: 420 CSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSW 479

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           N+MI     HG G +AI  +++ML     PD ITFL +L  CSH GLV+EG  YF  M  
Sbjct: 480 NAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRV 539

Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIG 377
            Y + P   HY  L+DL  RAG   +A  V   S P +P   +W  LL  C IH N+E+G
Sbjct: 540 CYGITPEEDHYSRLIDLLCRAGMFSEAKNV-TESMPFEPGAPIWEALLAGCWIHGNMELG 598

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
             A   L++L     G Y+ L+ +YA     + VAR RKL++  G+K  PG SWIE+ N 
Sbjct: 599 IQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENM 658

Query: 438 VHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSE 497
           VH F+VDD  HP+   +YR LE+++H  + +GY  D   V     S +   E + + HSE
Sbjct: 659 VHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQK--EYALSTHSE 716

Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
           KLA+ +G+   P G ++R+ KNLR            S    R++IVRDR R+HHFR+G C
Sbjct: 717 KLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGEC 776

Query: 546 SCGDYW 551
           SC +YW
Sbjct: 777 SCSNYW 782



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/447 (24%), Positives = 181/447 (40%), Gaps = 85/447 (19%)

Query: 5   KHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFN--QIQNPQTQAWNSLIRA 62
            +ARY+  +K  +   +    +L++Y  S + ++  A  LFN   +    T ++N++I A
Sbjct: 48  PYARYL-FDKIPKPDIVAATTMLSAY--SAAGNIKLAHQLFNATPMSIRDTVSYNAMITA 104

Query: 63  FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV-KALNKCQELHGFVIRSG-- 119
           F+ S     A+  +  M       PD FTF+  L A   +      CQ+LH  V + G  
Sbjct: 105 FSHSHDGHAALQLFVQMKRLGFV-PDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGAL 163

Query: 120 ---------------------YERCVVVS-------------------TNLMRGYAANGV 139
                                   CV+++                   T ++ GY  N  
Sbjct: 164 SVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDD 223

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           + AAR + + M +   V+WN++IS Y    F+ EA  L  RM    + LD +T   ++S+
Sbjct: 224 LVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISA 283

Query: 200 CAHVGALNMGIFLH----RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
            ++ G  N+G  +H    R   +      + V NAL+ +Y +CG L  A  VF +M  +D
Sbjct: 284 ASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKD 343

Query: 256 VLSWNS-------------------------------MIVGYGVHGRGDEAISFFKQMLM 284
           ++SWN+                               MI G   +G G+E +  F QM +
Sbjct: 344 LVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKL 403

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
            G  P    + G +  CS  G ++ G +  H  + +      +     L+ +Y R G +E
Sbjct: 404 EGLEPCDYAYAGAIASCSVLGSLDNG-QQLHSQIIQLGHDSSLSVGNALITMYSRCGLVE 462

Query: 345 KALEVINTSSPSDPVLWRTLLGSCKIH 371
            A  V  T    D V W  ++ +   H
Sbjct: 463 AADTVFLTMPYVDSVSWNAMIAALAQH 489



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  +F ++       W  +I   AQ+    + +  +N M +  L  P  + +   + +C 
Sbjct: 363 ANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGL-EPCDYAYAGAIASCS 421

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            + +L+  Q+LH  +I+ G++  + V   L+  Y+  G++EAA +VF  MP  D VSWN+
Sbjct: 422 VLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNA 481

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEM 219
           +I+   Q    ++A++LYE+M  ED+  D  T + +LS+C+H G +  G  +   +    
Sbjct: 482 MIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCY 541

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISF 278
           G        + L+D+  + G    A  V   M  +     W +++ G  +HG  +  I  
Sbjct: 542 GITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQA 601

Query: 279 FKQML 283
             ++L
Sbjct: 602 ADRLL 606



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 124/304 (40%), Gaps = 56/304 (18%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYTQASFHLEALKLYERM 181
           +V +T ++  Y+A G I+ A  +F+  P   RD VS+N++I+ ++ +     AL+L+ +M
Sbjct: 62  IVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQM 121

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM---GFVESVYVGNALVDMYAKC 238
           +      D FT   +L + + +   +      ++ CE+   G +    V NAL+  Y  C
Sbjct: 122 KRLGFVPDPFTFSSVLGALSLIA--DEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSC 179

Query: 239 G------------------------------------------NLDSAFCVFSRMRKRDV 256
                                                      +L +A  +   M     
Sbjct: 180 ASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIA 239

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           ++WN+MI GY   G  +EA    ++M   G   D  T+  ++   S+ GL   G +  H 
Sbjct: 240 VAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQ-VHA 298

Query: 317 MVSRYNLKPGIKHY-----GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            V R  ++P   H+       L+ LY R GKL +A  V +     D V W  +L  C   
Sbjct: 299 YVLRTVVQPS-GHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNA 357

Query: 372 RNVE 375
           R +E
Sbjct: 358 RRIE 361


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 177/484 (36%), Positives = 275/484 (56%), Gaps = 14/484 (2%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F  +      +WN++I   AQ+     A+     M  A L RPD+FT +  L       
Sbjct: 152 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADL-RPDSFTLSSVLPIFAEYV 210

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L K +E+HG+ IR+GY+  V + ++L+  YA    ++ +  VF  +P+ D +SWNSII+
Sbjct: 211 NLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIA 270

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
              Q     E LK +++M    +  +  +   ++ +CAH+  L++G  LH       F  
Sbjct: 271 GCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDG 330

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           +V++ +ALVDMYAKCGN+ +A  +F +M   D++SW +MI+GY +HG   +AIS FK+M 
Sbjct: 331 NVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRME 390

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
           + G  P+ + F+ +L  CSH GLV+E  +YF+ M   Y + PG++HY  + DL GR G+L
Sbjct: 391 VEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRL 450

Query: 344 EKALEVINTS--SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           E+A E I+     P+  V W TLL +C++H+N+E+ E   K L  ++  + G YVLL+ I
Sbjct: 451 EEAYEFISDMHIEPTGSV-WSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNI 509

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           Y+     +   + R  ++  G+K  P  SWIEI N+VH FV  DKSHP  D I   L+ +
Sbjct: 510 YSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVL 569

Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY----HSEKLAIAFGLATTPDGTSLRIV 517
           + + +  GY  D + V        D  E+   Y    HSE+LAI FG+ +TP GT++R+ 
Sbjct: 570 LEQMEREGYVLDTTEVL------HDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVT 623

Query: 518 KNLR 521
           KNLR
Sbjct: 624 KNLR 627



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 133/262 (50%), Gaps = 2/262 (0%)

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           R VF+ MP+RD+VSWN++IS   Q   H +AL +   M   D+  D FTL  +L   A  
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
             L  G  +H  A   G+   V++G++L+DMYAKC  +D +  VF  + + D +SWNS+I
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 269

Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
            G   +G  DE + FF+QML+A   P+ ++F  ++  C+H   +  G +  H  + R   
Sbjct: 270 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQ-LHGYIIRSRF 328

Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
              +     LVD+Y + G +  A  + +     D V W  ++    +H +     I++  
Sbjct: 329 DGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHA-YDAISLFK 387

Query: 384 LVQLEAASAGDYVLLATIYACT 405
            +++E         +A + AC+
Sbjct: 388 RMEVEGVKPNYVAFMAVLTACS 409


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 208/611 (34%), Positives = 308/611 (50%), Gaps = 89/611 (14%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L+ SYA      L+  + +F+++ +     +N +IR++  +      +  +  M+  
Sbjct: 56  GIKLMRSYAACGEPGLT--RKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNG 113

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG--------------YERC----- 123
              RPD +T+   LKAC   + L     +HG V++ G              Y +C     
Sbjct: 114 GF-RPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFE 172

Query: 124 ------------VVVSTNLMRGYAAN----GVIEAARS---------------------- 145
                       VV   +++ GYA N      +E  R                       
Sbjct: 173 ARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVAN 232

Query: 146 -----------VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLV 194
                      +F N+  ++L+SWN +I  Y + S   +A+ LY +M    V  D  T  
Sbjct: 233 TSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFA 292

Query: 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
            +L +C  + AL +G  +H    +     ++ + N+L+DMYA+CG LD A  VF RM+ R
Sbjct: 293 SVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFR 352

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           DV SW S+I  YG+ G+G  A++ F +ML +G  PDSI F+ +L  CSH GL++EG  YF
Sbjct: 353 DVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYF 412

Query: 315 HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHR 372
             M   Y + P I+HY CLVDL GRAG++++A  +I    P +P   +W TLL SC++  
Sbjct: 413 KQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIK-QMPIEPNERVWATLLSSCRVFT 471

Query: 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWI 432
           N++IG +A  NL+QL    +G YVLL+ IYA     + V   R ++K   I+ TPG S +
Sbjct: 472 NMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNV 531

Query: 433 EIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSS 492
           E+ NQVH F+  D SHP +  IY +L  ++ + K +GY   E+  A+     ED  E   
Sbjct: 532 ELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVP-ETDSALHDVEEED-KEGHL 589

Query: 493 AYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHF 540
           A HSEKLAI F L  T +   +RI KNLR            S    R++IVRD  R+HHF
Sbjct: 590 AVHSEKLAIVFALLNTQE-YQIRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHF 648

Query: 541 RDGLCSCGDYW 551
           +DG+CSCGDYW
Sbjct: 649 KDGVCSCGDYW 659



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 104/208 (50%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           +F    KA ++   +   ++LH  +      +   +   LMR YAA G     R VFD M
Sbjct: 20  SFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEM 79

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
            +R++V +N +I  Y     + + L ++  M       D +T  C+L +C+    L  G+
Sbjct: 80  SDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGL 139

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H    ++G   +++VGN L+ MY KCG L  A  VF  M  +DV+SWNSM+ GY  + 
Sbjct: 140 LIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNM 199

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLL 298
           R D+A+   ++M   G  PD  T   L+
Sbjct: 200 RFDDALEICREMEDYGQKPDGCTMASLM 227



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 1/140 (0%)

Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
           +G  L+  YA CG       VF  M  R+V+ +N MI  Y  + R D+ +  F++M+  G
Sbjct: 55  LGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGG 114

Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
           F PD+ T+  +L  CS    +  G+   H  V +  L   +     L+ +YG+ G L +A
Sbjct: 115 FRPDNYTYPCVLKACSCSENLRYGL-LIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEA 173

Query: 347 LEVINTSSPSDPVLWRTLLG 366
             V +     D V W +++ 
Sbjct: 174 RRVFDEMIWKDVVSWNSMVA 193


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 194/558 (34%), Positives = 295/558 (52%), Gaps = 47/558 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           + +A  LF   QNP    + SLI  F    S   AI  +  M+   +   D +  T  LK
Sbjct: 75  IDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHV-LADNYAVTAMLK 133

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC   +AL   +E+HG V++SG      ++  L+  Y   GV+E AR +FD MPERD+V+
Sbjct: 134 ACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVA 193

Query: 158 -------------------------------WNSIISCYTQASFHLEALKLYERMRFEDV 186
                                          W  +I    +       L+++  M+ + V
Sbjct: 194 CTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGV 253

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             +  T VC+LS+CA +GAL +G ++H    + G   + +V  AL++MY++CG++D A  
Sbjct: 254 EPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQA 313

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F  +R +DV ++NSMI G  +HG+  EA+  F +ML     P+ ITF+G+L  CSH GL
Sbjct: 314 LFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGL 373

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLL 365
           V+ G E F  M   + ++P ++HYGC+VD+ GR G+LE+A + I      +D  +  +LL
Sbjct: 374 VDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLL 433

Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
            +CKIH+N+ +GE   K L +     +G +++L+  YA        A  R+ ++  GI  
Sbjct: 434 SACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIK 493

Query: 426 TPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSE 485
            PG S IE+ N +H+F   D  HP+   IY+KLEE+ +  KF GY    + VA+     E
Sbjct: 494 EPGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTKFEGYLP-ATEVALHDIDDE 552

Query: 486 DFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRD 533
              E + A HSE+LAI +GL +T   T+LR+ KNLR            +    R ++VRD
Sbjct: 553 Q-KELALAVHSERLAICYGLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRD 611

Query: 534 RVRYHHFRDGLCSCGDYW 551
           R R+HHF +G CSC DYW
Sbjct: 612 RNRFHHFENGECSCKDYW 629



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 131/303 (43%), Gaps = 33/303 (10%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQA 168
           Q +H   I++   +   V+  L+R Y     I+ A  +F      ++  + S+I  +   
Sbjct: 44  QSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSF 103

Query: 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228
             + +A+ L+ +M  + V  D + +  +L +C    AL  G  +H +  + G      + 
Sbjct: 104 GSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIA 163

Query: 229 NALVDMYAKCGNL-------------------------------DSAFCVFSRMRKRDVL 257
             LV++Y KCG L                               + A  VF+ M  RD +
Sbjct: 164 LKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTV 223

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
            W  +I G   +G  +  +  F++M + G  P+ +TF+ +L  C+  G +E G  + H  
Sbjct: 224 CWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELG-RWIHAY 282

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEI 376
           + +  ++      G L+++Y R G +++A  + +     D   + +++G   +H +++E 
Sbjct: 283 MRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEA 342

Query: 377 GEI 379
            E+
Sbjct: 343 VEL 345


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 177/443 (39%), Positives = 254/443 (57%), Gaps = 15/443 (3%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           R V+    ++ GY   G++  AR VFD MP RD +SW++++  Y +      AL ++  M
Sbjct: 211 RDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNM 270

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
             + V  +   +V  LS+ A +G L  G F+H +    G    + VG ALVDMYAKCG +
Sbjct: 271 VEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCV 330

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
             A  VF  MR+RDV +WN+MI G   HG G +A+  F++ +  G  P ++TF+G+L GC
Sbjct: 331 AVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGC 390

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVL 360
           S  GLV EG  YF ++V +Y ++P ++HYGC+VDL GRAG + +A+E+I       DPVL
Sbjct: 391 SRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVL 450

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           W T+L SCK H  V++G      L++L+   +G YVLL+ IYA     + V   RKL+ S
Sbjct: 451 WGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSS 510

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
            G   + GWS +E   +VHKF+V D  H D+  IY  L+ I  R    GY  D S  +V 
Sbjct: 511 RGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVS--SVL 568

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
               E+    +   HSE+LAIA+G      G+ +RIVKNLR            ++ + R+
Sbjct: 569 HDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQRE 628

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +IVRD  R+HH ++G CSC DYW
Sbjct: 629 IIVRDGSRFHHMKEGKCSCLDYW 651



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 150/353 (42%), Gaps = 40/353 (11%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           ++ A+ +F+++      +W++L+  + +      A+  + +M+   + RP+       L 
Sbjct: 229 MTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGV-RPNQAAVVTALS 287

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           A  R+  L   + +H  V RSG   C+ V   L+  YA  G +  AR VFD M  RD+ +
Sbjct: 288 AAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFA 347

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           WN++I          +A++L+ER   E +     T V +L+ C+  G +  G    ++  
Sbjct: 348 WNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIV 407

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           E   +E                               ++  +  M+   G  G   EAI 
Sbjct: 408 EKYRIEP------------------------------EMEHYGCMVDLLGRAGLVPEAIE 437

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
             + M +A   PD + +  +L  C   GLV+ GV   + ++       G  +Y  L  +Y
Sbjct: 438 LIEGMHIA---PDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSG--YYVLLSGIY 492

Query: 338 GRAGKLEKALEV---INTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
            +A K ++  EV   +++   +    W  +    K+H+ + +G+   K+ VQ+
Sbjct: 493 AKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFL-VGDTYHKDSVQI 544



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 1/160 (0%)

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           + R+  E+  V  V   N ++  Y + G +  A  VF  M  RD +SW++++ GY     
Sbjct: 200 MRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEE 259

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
            + A+  F+ M+  G  P+    +  L   +  GL+E G ++ H +V R  +   +    
Sbjct: 260 LEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHG-KFVHNVVQRSGMPVCMNVGA 318

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            LVD+Y + G +  A EV +     D   W  ++     H
Sbjct: 319 ALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAH 358


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/524 (34%), Positives = 283/524 (54%), Gaps = 21/524 (4%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LF+++ +    +WNSLI  F++       +     M      +P+  T    + AC  V 
Sbjct: 95  LFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVG 154

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            L+  + +HG  ++SG    V V  +L+  Y   G +EAA  +F+ M  + LVSWNS+++
Sbjct: 155 ELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVA 214

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            +       + +  +  MR   +  D  T+V LL +C ++G   +   +H      G   
Sbjct: 215 VHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDG 274

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
           ++ +  AL+D+YAK G L  +  VF  M   D ++W +M+  Y +HGRG EAI  F+ M+
Sbjct: 275 NLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMV 334

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  PD +TF  LL  CSH GLVEEG  YF +M   Y ++  ++HY C+VDL GR+G L
Sbjct: 335 REGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHL 394

Query: 344 EKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
             A ++I  S P +P   +W  L+G+C++  N+E+G+   + L  L+ + + +Y+ L+ +
Sbjct: 395 NDAYKLIK-SMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNM 453

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           Y+        ++ R L+K   +   PG S+IE GN++H FV+ D+SHPD + IY KLEE+
Sbjct: 454 YSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQIYNKLEEL 513

Query: 462 MHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           + + + +G+      V   V     ED + K    HSEKLAIAFGL  T  G  L I KN
Sbjct: 514 VRKNREVGFASKTEYVLHDVDEEVKEDLINK----HSEKLAIAFGLLVTNAGMPLIITKN 569

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           +R            S+   R +I+RD  R+HHF +GLCSCGDYW
Sbjct: 570 IRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 161/315 (51%), Gaps = 15/315 (4%)

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           L  +FA  LSP    F     L+++L           + A     +++ C+ LH  VI+S
Sbjct: 19  LYNSFASQLSPTFHAFSNVDSLVSAL-----------ITAISTCSSISYCRALHCRVIKS 67

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
                  +   L+  Y   G  + A  +FD +P++DLVSWNS+IS +++ +     L L 
Sbjct: 68  VNYNHGFIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLL 127

Query: 179 ERMRFEDVGL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
            RMRFE +GL  +  T++ ++S+CA VG L++G  +H IA + G +  V V N+L+++Y 
Sbjct: 128 FRMRFE-MGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYG 186

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
           KCG L++A C+F  M  + ++SWNSM+  +   G  ++ I +F  M  AG + D  T + 
Sbjct: 187 KCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVS 246

Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
           LL  C + G V +  E  H  +    L   +     L+DLY + G L  + +V       
Sbjct: 247 LLLACENLG-VRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINP 305

Query: 357 DPVLWRTLLGSCKIH 371
           D V W  +L S  +H
Sbjct: 306 DAVAWTAMLSSYAMH 320


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 305/561 (54%), Gaps = 50/561 (8%)

Query: 36  SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
           +++  A+ LF++         N++   + +     +A+  +N ++M S  RPD  +    
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFN-LMMDSGVRPDRISMLSA 343

Query: 96  LKACERVKALNKCQELHGFVIRSGYE-------------------------------RCV 124
           + +C +++ +   +  HG+V+R+G+E                               + V
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF- 183
           V   +++ GY  NG ++AA   F+ MPE+++VSWN+IIS   Q S   EA++++  M+  
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
           E V  DG T++ + S+C H+GAL++  +++    + G    V +G  LVDM+++CG+ +S
Sbjct: 464 EGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPES 523

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F+ +  RDV +W + I    + G  + AI  F  M+  G  PD + F+G L  CSH
Sbjct: 524 AMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSH 583

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
            GLV++G E F+ M+  + + P   HYGC+VDL GRAG LE+A+++I    P +P  V+W
Sbjct: 584 GGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIE-DMPMEPNDVIW 642

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
            +LL +C++  NVE+   A + +  L     G YVLL+ +YA       +A+ R  +K  
Sbjct: 643 NSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEK 702

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
           G++  PG S I+I  + H+F   D+SHP+   I   L+E+  RA  +G+  D S V +  
Sbjct: 703 GLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDV 762

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
              E     S   HSEKLA+A+GL ++  GT++RIVKNLR            S  Y+R++
Sbjct: 763 DEKEKIFMLSR--HSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREI 820

Query: 530 IVRDRVRYHHFRDGLCSCGDY 550
           I+RD  R+H+ R G CSCGD+
Sbjct: 821 ILRDNNRFHYIRQGKCSCGDF 841



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 179/353 (50%), Gaps = 9/353 (2%)

Query: 29  SYAISVSSSLSYAQLLFNQIQNPQTQ-AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP 87
           S  +    SLS+A+ +F   ++  T   +NSLIR +A S    +AI  +  M+ + +S P
Sbjct: 74  SCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGIS-P 132

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D +TF F L AC + +A     ++HG +++ GY + + V  +L+  YA  G +++AR VF
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGAL 206
           D M ER++VSW S+I  Y +  F  +A+ L+ RM R E+V  +  T+VC++S+CA +  L
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDL 252

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
             G  ++      G   +  + +ALVDMY KC  +D A  +F      ++   N+M   Y
Sbjct: 253 ETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNY 312

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
              G   EA+  F  M+ +G  PD I+ L  +  CS    +  G +  H  V R   +  
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWG-KSCHGYVLRNGFESW 371

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEI 379
                 L+D+Y +  + + A  + +  S    V W +++        VE GE+
Sbjct: 372 DNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAG-----YVENGEV 419



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 158/356 (44%), Gaps = 33/356 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +F+++      +W S+I  +A+      A+  +  M+      P++ T    + 
Sbjct: 185 LDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVIS 244

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC +++ L   ++++ F+  SG E   ++ + L+  Y     I+ A+ +FD     +L  
Sbjct: 245 ACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDL 304

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
            N++ S Y +     EAL ++  M    V  D  +++  +SSC+ +  +  G   H    
Sbjct: 305 CNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVL 364

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD---- 273
             GF     + NAL+DMY KC   D+AF +F RM  + V++WNS++ GY  +G  D    
Sbjct: 365 RNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWE 424

Query: 274 ---------------------------EAISFFKQML-MAGFHPDSITFLGLLCGCSHQG 305
                                      EAI  F  M    G + D +T + +   C H G
Sbjct: 425 TFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
            ++   ++ +  + +  ++  ++    LVD++ R G  E A+ + N+ +  D   W
Sbjct: 485 ALDLA-KWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAW 539



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 149/317 (47%), Gaps = 10/317 (3%)

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA---ARSVFDNMP 151
           +LK C   K +++ +  H  + + G +  V   T L+      G  E+   A+ VF+N  
Sbjct: 38  SLKNC---KTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSE 94

Query: 152 ERDLV-SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
                  +NS+I  Y  +    EA+ L+ RM    +  D +T    LS+CA   A   GI
Sbjct: 95  SYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGI 154

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H +  +MG+ + ++V N+LV  YA+CG LDSA  VF  M +R+V+SW SMI GY    
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214

Query: 271 RGDEAIS-FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
              +A+  FF+ +      P+S+T + ++  C+    +E G E  +  +    ++     
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETG-EKVYAFIRNSGIEVNDLM 273

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
              LVD+Y +   ++ A  + +    S+  L    + S  + + +    + + NL+    
Sbjct: 274 VSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNA-MASNYVRQGLTREALGVFNLMMDSG 332

Query: 390 ASAGDYVLLATIYACTK 406
                  +L+ I +C++
Sbjct: 333 VRPDRISMLSAISSCSQ 349


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 208/575 (36%), Positives = 300/575 (52%), Gaps = 42/575 (7%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVSSS------------LSYAQLLFNQIQNPQTQAWNSL 59
           L  A+   +IHGE L     ++VS S            L+  + +F+ +      +WNS+
Sbjct: 428 LKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSI 487

Query: 60  IRAFAQSLS--PLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
           I A A+S    P   + + N           TF+   +  +      L K  ++HG  ++
Sbjct: 488 IGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGK--QIHGLALK 545

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER-DLVSWNSIISCYTQASFHLEALK 176
           +           L+  Y   G ++    +F  M ER D V+WNS+IS Y       +AL 
Sbjct: 546 NNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALD 605

Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
           L   M      LD F    +LS+ A V  L  G+ +H  +        V VG+ALVDMY+
Sbjct: 606 LVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYS 665

Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDSITFL 295
           KCG LD A   F+ M  R+  SWNSMI GY  HG+G+EA+  F+ M + G   PD +TF+
Sbjct: 666 KCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFV 725

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
           G+L  CSH GL+EEG ++F  M   Y L P I+H+ C+ D+ GRAG+L+K LE      P
Sbjct: 726 GVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDK-LEDFIEKMP 784

Query: 356 SDP--VLWRTLLGSC--KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
             P  ++WRT+LG+C     R  E+G+ A + L QLE  +A +YVLL  +YA     E +
Sbjct: 785 MKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDL 844

Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
            + RK +K   +K   G+SW+ + + VH FV  DKSHPDAD+IY+KL+E+  + +  GY 
Sbjct: 845 VKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYV 904

Query: 472 KDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT-SLRIVKNLR------- 521
                +L  +   + E+ L    +YHSEKLA+AF LA     T  +RI+KNLR       
Sbjct: 905 PQTGFALYDLEQENKEEIL----SYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHS 960

Query: 522 -----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                S    R +I+RD  R+HHF+DG CSC D+W
Sbjct: 961 AFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 164/341 (48%), Gaps = 7/341 (2%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A + S SLSYA+ +FNQ++       N L+    +     +A   +  M       P+++
Sbjct: 252 AFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESY 311

Query: 91  TF---TFTLKACERVKALNKCQELHGFVIRSGYERCVV-VSTNLMRGYAANGVIEAARSV 146
                +F   +      L K +E+HG VI +G    +V +   L+  YA  G I  AR V
Sbjct: 312 VILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRV 371

Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
           F  M ++D VSWNS+I+   Q    +EA++ Y+ MR  D+    FTL+  LSSCA +   
Sbjct: 372 FYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWA 431

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
            +G  +H  + ++G   +V V NAL+ +YA+ G L+    +FS M + D +SWNS+I   
Sbjct: 432 KLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGAL 491

Query: 267 GVHGRG-DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
               R   EA+  F     AG   + ITF  +L   S     E G +  H +  + N+  
Sbjct: 492 ARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQ-IHGLALKNNIAD 550

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLL 365
                  L+  YG+ G+++   ++ +  +   D V W +++
Sbjct: 551 EATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMI 591



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 170/380 (44%), Gaps = 29/380 (7%)

Query: 10  VGLNKARQAHEIHGEWLLNSYAISVS-------------SSLSYAQLLFNQIQNPQTQAW 56
           VG+   RQ   IHG     SYA+                 S+ YA   F  I+   + +W
Sbjct: 118 VGILFGRQ---IHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSW 174

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF-TFTLKACERVKA-LNKCQELHGF 114
           NS+I  ++Q+     A   ++ M     SRP  +TF +    AC   +  +   +++   
Sbjct: 175 NSIISVYSQAGDQRSAFRIFSSMQYDG-SRPTEYTFGSLVTTACSLTEPDVRLLEQIMCT 233

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
           + +SG    + V + L+  +A +G +  AR VF+ M  R+ V+ N ++    +  +  EA
Sbjct: 234 IQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEA 293

Query: 175 LKLYERMR-FEDVGLDGFTLVCLLS-----SCAHVGALNMGIFLHRIACEMGFVE-SVYV 227
            KL+  M    DV  + +  V LLS     S A    L  G  +H      G V+  V +
Sbjct: 294 TKLFMDMNSMIDVSPESY--VILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGI 351

Query: 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
           GN LV+MYAKCG++  A  VF  M  +D +SWNSMI G   +G   EA+  +K M     
Sbjct: 352 GNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDI 411

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            P S T +  L  C+     + G +  H    +  +   +     L+ LY   G L +  
Sbjct: 412 LPGSFTLISSLSSCASLKWAKLG-QQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECR 470

Query: 348 EVINTSSPSDPVLWRTLLGS 367
           ++ ++    D V W +++G+
Sbjct: 471 KIFSSMPEHDQVSWNSIIGA 490



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 119/268 (44%), Gaps = 22/268 (8%)

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
            H  + ++  ++ V +  NL+  Y   G   +AR VFD MP R+ VSW  I+S Y++   
Sbjct: 23  FHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGE 82

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM--GIFLHRIACEMGFVESVYVG 228
           H EAL     M  E +  + +  V +L +C  +G++ +  G  +H +  ++ +     V 
Sbjct: 83  HKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVS 142

Query: 229 NALVDMYAKC-GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
           N L+ MY KC G++  A C F  +  ++ +SWNS+I  Y   G    A   F  M   G 
Sbjct: 143 NVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGS 202

Query: 288 HPDSITFLGLL-CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL---------Y 337
            P   TF  L+   CS   L E  V     ++        I+  G L DL         +
Sbjct: 203 RPTEYTFGSLVTTACS---LTEPDVRLLEQIMCT------IQKSGLLTDLFVGSGLVSAF 253

Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLL 365
            ++G L  A +V N     + V    L+
Sbjct: 254 AKSGSLSYARKVFNQMETRNAVTLNGLM 281



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
            + SC  VG      F H    +    + VY+ N L++ Y + G+  SA  VF  M  R+
Sbjct: 9   FVQSC--VGHRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRN 66

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
            +SW  ++ GY  +G   EA+ F + M+  G   +   F+ +L  C   G V
Sbjct: 67  CVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV 118


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 179/522 (34%), Positives = 282/522 (54%), Gaps = 18/522 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LF+++      +W ++I  +  S + ++A F    ++          TF   ++A   ++
Sbjct: 189 LFDEMPARNAVSWGTIISGYVDSGNYVEA-FRLFILMREEFYDCGPRTFATMIRASAGLE 247

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            +   ++LH   I++G  + + VS  L+  Y+  G +E A  VFD MP++ +V WNSII+
Sbjct: 248 IIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIA 307

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y    +  EAL LY  MR   V +D FT   ++  C+ + ++     +H      GF  
Sbjct: 308 GYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGL 367

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            V    ALVD Y+K G +D A  VF RM  R+++SWN++I GYG HG G+EAI  F++ML
Sbjct: 368 DVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKML 427

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
             G  P+ +TFL +L  CS  GL E G E F  M   + +KP   H+ C+++L GR G L
Sbjct: 428 REGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLL 487

Query: 344 EKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
           ++A  +I   +P  P   +W  LL +C++H N+E+G+ A + L  +E     +Y++L  I
Sbjct: 488 DEAYALIR-KAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNI 546

Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
           Y  +   +  A   + +K  G++  P  SWIE+ NQ H F+  DK H   + +  K++E+
Sbjct: 547 YNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDEL 606

Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
           M     +GY  +E    +      +  EK   YHSEKLAIA+GL  T + T L+IV++ R
Sbjct: 607 MLNISKLGYVPEEQNFMLPDVDENE--EKIRMYHSEKLAIAYGLLNTLEKTPLQIVQSHR 664

Query: 522 ------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                       ++   R++++RD  R+HHFRDG CSCGDYW
Sbjct: 665 ICSDCHSVIKLIAMITKREIVIRDASRFHHFRDGSCSCGDYW 706



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 153/315 (48%), Gaps = 2/315 (0%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           T+   + AC  +K++   + L  +++ +G+E    +   ++  +   G++  A  +FD M
Sbjct: 134 TYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEM 193

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
           P R+ VSW +IIS Y  +  ++EA +L+  MR E       T   ++ + A +  +  G 
Sbjct: 194 PARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGLEIIFPGR 253

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            LH  A + G  + ++V  AL+DMY+KCG+L+ A CVF  M  + ++ WNS+I GY +HG
Sbjct: 254 QLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHG 313

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
             +EA+  + +M  +G   D  TF  ++  CS    V    +  H  + R      +   
Sbjct: 314 YSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQ-VHASLVRNGFGLDVVAN 372

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
             LVD Y + GK++ A  V +  S  + + W  L+     H + E   I M   +  E  
Sbjct: 373 TALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEA-IDMFEKMLREGM 431

Query: 391 SAGDYVLLATIYACT 405
                  LA + AC+
Sbjct: 432 MPNHVTFLAVLSACS 446


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 206/569 (36%), Positives = 290/569 (50%), Gaps = 63/569 (11%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           +SS SY   LF    +    A N L+R     L PL+        L  +L R +  +FTF
Sbjct: 78  ASSSSYPLSLFRHSASASAFASNHLLRVLPHPL-PLR--------LFPNLPRRNLHSFTF 128

Query: 95  TL-------KACERVKALNKCQELHGFVIRSG--------------YERC---------- 123
            L        A +   +      +H   +++G              Y  C          
Sbjct: 129 LLASISNHLDATDHRASSFLGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVF 188

Query: 124 --------VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
                   VV    ++ GY   G++ AAR VF+ MP RD VSW++++  Y +      AL
Sbjct: 189 DELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVAL 248

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
            ++  M  + V ++   +V  LS+ A +G L  G F+H +    G   SV VG ALVDM+
Sbjct: 249 GVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMF 308

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           +KCG +  A  VF  M +RDV +WN+MI G   HG G +A+  F + L  G  P  ITF+
Sbjct: 309 SKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFV 368

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN-TSS 354
           G+L  CS  GLV EG  YF +MV +Y ++P ++HYGC+VDL GRAG + +A+E+I     
Sbjct: 369 GVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHI 428

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
             DPVLW T+L +CK H  V++G      L++LE A  G YVLLA+IYA  K  + V   
Sbjct: 429 APDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWDEVREV 488

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
           RKL+ S G   + GWS +E    +HKF+V D  H D+  IY  L+ I  R    GY  D 
Sbjct: 489 RKLMSSRGTGKSAGWSLMEAQGNLHKFLVGDMDHKDSVQIYNMLDMINRRLADAGYVPDV 548

Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
           S V       E     +   HSE+LAIA+G   T  G+ +RIVKNL+            +
Sbjct: 549 SSVLHDIGDEEKV--HAIKVHSERLAIAYGFIVTEVGSPIRIVKNLQVCGDCHEFSKMVT 606

Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
             ++R++IVRD  R+HH ++G CSC DYW
Sbjct: 607 KVFNREIIVRDGSRFHHMKEGKCSCLDYW 635


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 299/560 (53%), Gaps = 31/560 (5%)

Query: 19  HEIHGEWLLNSYA--ISVSSSL----------SYAQLLFNQIQNPQTQAWNSLIRAFAQS 66
            +IHG  +  SY   I V+++L            A+ LF+++      ++N +I  +A +
Sbjct: 264 QQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWN 323

Query: 67  LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV 126
               ++   +  +   S  R + F F   L        L+  ++ H   + +     V V
Sbjct: 324 GQYEKSFDLFKRLQGTSFDRKN-FPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQV 382

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
              L+  YA     E A  +F N+  R+ V W +IIS Y Q  FH EALK+++ M  E+V
Sbjct: 383 GNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENV 442

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D  T    L + A++ ++++G  LH     +G + SV+ G+ LVDMYA CG++  A  
Sbjct: 443 HGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIE 502

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF  M  R+++ WN++I  Y  +G  +   S F  M+ +G +PDS++FL +L  CSH+GL
Sbjct: 503 VFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGL 562

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTL 364
           VE+ + YF+ M   Y L P  KHY  ++D+  R+G+  +A  +I +  P +P  V+W ++
Sbjct: 563 VEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLI-SEMPFEPDEVMWSSV 621

Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEA-ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           L SC+IH+N ++ + A   L +++A   A  YV ++ IYA     E  A+ +K ++  G+
Sbjct: 622 LNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGV 681

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
           K    +SW+EI ++VH F  +D++HP  + I RK+  ++      GY  D S      + 
Sbjct: 682 KKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTL--QNV 739

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIV 531
            E+   +S  YHSE+LAIAF L  TP+G+ + I+KNLR            S    R++ V
Sbjct: 740 DEEMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITV 799

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RD  R+HHFRDG CSCGDYW
Sbjct: 800 RDSSRFHHFRDGSCSCGDYW 819



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 178/384 (46%), Gaps = 6/384 (1%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S +L  A+ LF  + +    +W  +I  ++Q+  P +A   Y  M  + + +PD  TF  
Sbjct: 90  SRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGV-KPDHITFAT 148

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L   +    L +  ++H  +IR G+   ++V  +L+  Y     ++ A  +F  MP +D
Sbjct: 149 LLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKD 208

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            VS+N +I+ YT+  F  EALKL+ +MR  D    GFT   +L        +  G  +H 
Sbjct: 209 SVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHG 268

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
           +A +  +V  ++V NAL+D Y+K   +D A  +F  M + D +S+N +I GY  +G+ ++
Sbjct: 269 LAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEK 328

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           +   FK++    F   +  F  +L   + +  +  G +  H           ++    LV
Sbjct: 329 SFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQT-HAQAVVTTAVSEVQVGNALV 387

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA-G 393
           D+Y +  K E A  +    +  + V W  ++    I+      E A+K   ++   +  G
Sbjct: 388 DMYAKCEKFEDANRIFANLAYRNSVPWTAIIS---IYVQKGFHEEALKMFKEMNRENVHG 444

Query: 394 DYVLLATIYACTKDEEGVARTRKL 417
           D    A+    + +   V+  ++L
Sbjct: 445 DQATFASTLKASANLASVSLGKQL 468



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 98/213 (46%), Gaps = 6/213 (2%)

Query: 87  PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM-RGYAANGVIEAARS 145
           P+   F F LK   R   + K ++L   +           S N+M  GY  +  +  AR 
Sbjct: 44  PEISRFNFKLKDLVRANQIAKARQLFDEMPYRN-----TSSVNMMVSGYVKSRNLFRARE 98

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +F++M  R+ VSW  +I  Y+Q +   EA  LY  M    V  D  T   LLS       
Sbjct: 99  LFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTT 158

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L   + +H      GF  S+ V N+LVD Y K   LD A  +FS M  +D +S+N MI G
Sbjct: 159 LKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITG 218

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
           Y  +G  +EA+  F QM    F P   TF  +L
Sbjct: 219 YTKYGFREEALKLFMQMRNMDFQPSGFTFAAML 251



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 1/137 (0%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N +V  Y K  NL  A  +F  M  R+ +SW  MI GY  + +  EA + + +M  +G  
Sbjct: 81  NMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVK 140

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           PD ITF  LL G      ++E ++  H  + R+     +  +  LVD Y +   L+ A +
Sbjct: 141 PDHITFATLLSGFDDTTTLKEVLQ-IHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQ 199

Query: 349 VINTSSPSDPVLWRTLL 365
           + +     D V +  ++
Sbjct: 200 LFSEMPTKDSVSFNVMI 216


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 203/603 (33%), Positives = 311/603 (51%), Gaps = 86/603 (14%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A S     S A+ +F++        +N +IR++  +   ++A+  +  ML  + + PD +
Sbjct: 80  AYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFN-PDHY 138

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSG--------------YERC------------- 123
           TF   LKAC  +  L    ++H  +++ G              Y +C             
Sbjct: 139 TFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQM 198

Query: 124 ----VVVSTNLMRGYAANGVIEAA------------------------------------ 143
               VV   +++ GYA +G  + A                                    
Sbjct: 199 PYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQY 258

Query: 144 -RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
             ++F+ M +++L+SWN +I+ Y   S   EA+ L+ +M    +  D  T+  LL +C  
Sbjct: 259 IHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGD 318

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL +G  LH+   +     ++ + NAL+DMYAKCG L+ A  VF +MR RDV+SW SM
Sbjct: 319 LSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSM 378

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           +  YG  G+G +A++ F +ML +G +PDSI F+ +L  CSH GL+++G  YF MM  +Y 
Sbjct: 379 MSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYG 438

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIA 380
           + P I+H+ C+VDL+GRAG++E+A   I    P +P   +W  LL +C++H  ++IG +A
Sbjct: 439 IVPRIEHFACMVDLFGRAGEVEEAYSFIK-QMPMEPNERVWGALLSACRVHSKMDIGLVA 497

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
              L QL    +G YVLL+ IYA     + V   R  +K  GIK  PG S +E+  QVH 
Sbjct: 498 ADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHT 557

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           F+  D+ HP A  IY +L+ ++ + K +GY   ++  A+     ED  E   A HSEKLA
Sbjct: 558 FLAGDQYHPQAKNIYGELDVLVGKMKELGYIP-QTESALHDVEVED-KECHLAIHSEKLA 615

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           I F +  T  GT +RI KNLR            S   SR++IVRD  R+HHF +G+CSCG
Sbjct: 616 IVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCG 675

Query: 549 DYW 551
           DYW
Sbjct: 676 DYW 678



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 155/316 (49%), Gaps = 28/316 (8%)

Query: 93  TFTLKACERV-------KALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGVIEAAR 144
            F+ +ACE +       K LNK   LH  ++ + + R    ++  LMR Y+A G    AR
Sbjct: 35  VFSKEACEVILDQYPGIKTLNK---LHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVAR 91

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            +FD   E+++V +N +I  Y   + ++EAL +++ M       D +T  C+L +C+ + 
Sbjct: 92  YIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLD 151

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
            L +G+ +H    ++G   ++++GNALV MY KCG L  A  V  +M  RDV+SWNSM+ 
Sbjct: 152 NLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVA 211

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GY   G+ D+A+   K+M     + D+ T   L     +  L  E V+Y H M  R   K
Sbjct: 212 GYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERMT-K 268

Query: 325 PGIKHYGCLVDLYGRAGKLEKA----LEVINTSSPSDPVLWRTLLGSC----------KI 370
             +  +  ++ +Y       +A    L++       D V   +LL +C          ++
Sbjct: 269 KNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRL 328

Query: 371 HRNVEIGEIAMKNLVQ 386
           H+ +E G +    L++
Sbjct: 329 HKYIEKGNLQPNLLLE 344


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 185/562 (32%), Positives = 292/562 (51%), Gaps = 51/562 (9%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           +  A+ LF  +      +WN++I  + Q+    +A+  ++ ML  S   PD FT T  L 
Sbjct: 246 MDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 305

Query: 98  ACERVKALNKCQELHGFVIR--------------SGYERC-------------------V 124
           AC  +  +   +++H +++R              S Y +                    V
Sbjct: 306 ACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNV 365

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           +  T L+ GY   G +E+AR +F  M  RD+V+W ++I  Y Q   + EA+ L+  M   
Sbjct: 366 ISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITC 425

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
               + +TL  +LS CA +  L+ G  +H  A       S  V NA++ MYA+ G+   A
Sbjct: 426 GPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWA 485

Query: 245 FCVFSRM-RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
             +F ++  +++ ++W SMIV    HG+G+EA+  F++ML AG  PD IT++G+L  CSH
Sbjct: 486 RRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSH 545

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
            G V EG  Y+  + + + + P + HY C+VDL  RAG   +A E I    P +P  + W
Sbjct: 546 AGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIR-RMPVEPDAIAW 604

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
            +LL +C++H+N E+ E+A + L+ ++  ++G Y  +A +Y+        AR  K  K  
Sbjct: 605 GSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEK 664

Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
            ++   G+SW  I +++H F  DD  HP  D +Y     +    K  G+  D  L +V  
Sbjct: 665 AVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPD--LQSVLH 722

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
              ++  E+  + HSEKLAIAFGL +TP+ T+LR++KNLR            S    R++
Sbjct: 723 DVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREI 782

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           IVRD  R+HHFRDGLCSC DYW
Sbjct: 783 IVRDATRFHHFRDGLCSCKDYW 804



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 166/393 (42%), Gaps = 73/393 (18%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  L+ A+ +F ++      +W  ++    ++    +AI     M     + P  FT T 
Sbjct: 111 SGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFT-PTQFTLTN 169

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L +C   +A    +++H FV++ G   CV V+ +++  Y   G  E A +VF+ MP R 
Sbjct: 170 VLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRS 229

Query: 155 L-------------------------------VSWNSIISCYTQASFHLEALKLYERMRF 183
           +                               VSWN++I+ Y Q     +ALKL+ RM  
Sbjct: 230 VSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLH 289

Query: 184 E-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC---- 238
           E  +  D FT+  +LS+CA++G + +G  +H          +  V NAL+  YAK     
Sbjct: 290 ESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVE 349

Query: 239 -----------------------------GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
                                        G+++SA  +F  M  RDV++W +MIVGY  +
Sbjct: 350 NARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQN 409

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           GR DEAI  F+ M+  G  P+S T   +L  C+    ++ G +  H    R  L+     
Sbjct: 410 GRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG-KQIHCRAIRSLLERSSSV 468

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
              ++ +Y R+G    A  +       D V WR
Sbjct: 469 SNAIITMYARSGSFPWARRMF------DQVCWR 495



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 122/268 (45%), Gaps = 33/268 (12%)

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
           R V    +L+  +A +G +  AR VF  MPERD VSW  ++    +A    EA+K    M
Sbjct: 96  RNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM 155

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
             +      FTL  +LSSCA   A  +G  +H    ++G    V V N++++MY KCG+ 
Sbjct: 156 TADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDA 215

Query: 242 DSAFCVFSRMRKRDV-------------------------------LSWNSMIVGYGVHG 270
           ++A  VF RM  R V                               +SWN+MI GY  +G
Sbjct: 216 ETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNG 275

Query: 271 RGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
              +A+  F +ML  +   PD  T   +L  C++ G V  G +  H  + R  +    + 
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIG-KQVHAYILRTEMAYNSQV 334

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSD 357
              L+  Y ++G +E A  +++ S  +D
Sbjct: 335 TNALISTYAKSGSVENARRIMDQSMETD 362



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 69/193 (35%), Gaps = 42/193 (21%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK----CGNLDSAFCVFSR- 250
           LL  C        G  +H  A + G + S Y+ N L+  Y +     G L  A  +F   
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 251 -MRKRDVLSWNS-------------------------------MIVGYGVHGRGDEAISF 278
            + +R+V +WNS                               M+VG    GR  EAI  
Sbjct: 92  PLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKT 151

Query: 279 FKQMLMAGFHPDSITFLGLL--CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
              M   GF P   T   +L  C  +  G V   V   H  V +  L   +     ++++
Sbjct: 152 LLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKV---HSFVVKLGLGSCVPVANSVLNM 208

Query: 337 YGRAGKLEKALEV 349
           YG+ G  E A  V
Sbjct: 209 YGKCGDAETASTV 221


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 184/525 (35%), Positives = 279/525 (53%), Gaps = 19/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+++      +WN++I     +    +A F    M+    S   +  F   ++A  
Sbjct: 185 ARRLFDEMPEKNILSWNTIIGGLVDAGDYFEA-FRLFLMMWQDFSDAGSRMFVTMIRASA 243

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +  +   ++LH   +++G    V V+  L+  Y+  G IE A+ VFD MPE+  V WNS
Sbjct: 244 GLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNS 303

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           II+ Y    +  EAL +Y  MR   V +D FT   ++  CA + +L      H      G
Sbjct: 304 IIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHG 363

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F   +    ALVD+Y+K G ++ A  VF  M  ++V+SWN++I GYG HGRG EA+  F+
Sbjct: 364 FGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFE 423

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML  G  P+ +TFL +L  CS+ GL + G E F  M   + +KP   HY C+++L GR 
Sbjct: 424 RMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGRE 483

Query: 341 GKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G L++A  +I   +P  P   +W  LL +C++H+N E+G+ A + L  +      +YV+L
Sbjct: 484 GLLDEAFALIK-DAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVL 542

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
             IY  +   E  A   + +K  G++  P  SWIEI  Q + F+  DK H  +  IY+KL
Sbjct: 543 LNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKL 602

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           +E+M      GY   +  +       E   E+   YHSEKLAIAFGL  T D T L+IV+
Sbjct: 603 DELMLEISKHGYVPQDKFLLPDVDEQE---ERVLLYHSEKLAIAFGLINTSDWTPLQIVQ 659

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + R            ++   R+++VRD  R+HHF+DG CSCGDYW
Sbjct: 660 SHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 165/321 (51%), Gaps = 8/321 (2%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D+ T+   + AC  +K++   +++  ++I SG +    +   ++  +   G++  AR +F
Sbjct: 130 DSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLF 189

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERM--RFEDVGLDGFTLVCLLSSCAHVGA 205
           D MPE++++SWN+II     A  + EA +L+  M   F D G   F  V ++ + A +G 
Sbjct: 190 DEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMF--VTMIRASAGLGL 247

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           +  G  LH  + + G    V+V  AL+DMY+KCG+++ A CVF +M ++  + WNS+I G
Sbjct: 248 IFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAG 307

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y +HG  +EA+S + +M  +G   D+ TF  ++  C+    +E   +  H  + R+    
Sbjct: 308 YALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQA-HAGLVRHGFGL 366

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEIAMKNL 384
            I     LVDLY + G++E A  V +     + + W  L+     H R VE  E+  + L
Sbjct: 367 DIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERML 426

Query: 385 VQLEAASAGDYVLLATIYACT 405
              E         LA + AC+
Sbjct: 427 --HEGMVPNHVTFLAVLSACS 445



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 153/324 (47%), Gaps = 44/324 (13%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S   S+  AQ +F+Q+    T  WNS+I  +A      +A+  Y  M  + + + D FTF
Sbjct: 278 SKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGV-KIDNFTF 336

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
           +  ++ C R+ +L   ++ H  ++R G+   +V +T L+  Y+  G IE A+ VFD MP 
Sbjct: 337 SIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPH 396

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG--I 210
           ++++SWN++I+ Y      +EA++++ERM  E +  +  T + +LS+C++ G  + G  I
Sbjct: 397 KNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEI 456

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
           F           ES+   + +                     K   + +  MI   G  G
Sbjct: 457 F-----------ESMSRDHKI---------------------KPRAMHYACMIELLGREG 484

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR-YNLKP-GIK 328
             DEA +  K    A F P    +  LL  C     V +  E       + Y + P  + 
Sbjct: 485 LLDEAFALIKD---APFKPTVNMWAALLTACR----VHKNFELGKFAAEKLYGMGPEKLS 537

Query: 329 HYGCLVDLYGRAGKLEKALEVINT 352
           +Y  L+++Y R+G+LE+A  VI T
Sbjct: 538 NYVVLLNIYNRSGRLEEAAAVIQT 561


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 168/442 (38%), Positives = 263/442 (59%), Gaps = 21/442 (4%)

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           V  +L+  YA +G +E AR  FD + E++LVS+N+I+  Y +     EA  L+  +    
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           +G+  FT   LLS  A +GA+  G  +H    + G+  +  + NAL+ MY++CGN+++AF
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAF 180

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF+ M  R+V+SW SMI G+  HG    A+  F +ML  G  P+ IT++ +L  CSH G
Sbjct: 181 QVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 240

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRT 363
           ++ EG ++F+ M   + + P ++HY C+VDL GR+G L +A+E IN S P  +D ++WRT
Sbjct: 241 MISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN-SMPLMADALVWRT 299

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LLG+C++H N E+G  A + +++ E      Y+LL+ ++A     + V + RK +K   +
Sbjct: 300 LLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNL 359

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV--AVSG 481
               G SWIE+ N+VH+F V + SHP A  IY++L+++  + K +GY  D   V   +  
Sbjct: 360 IKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEE 419

Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
              E FL +    HSEK+A+AFGL +T     +RI KNLR            S+A  R++
Sbjct: 420 EQKEQFLFQ----HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREI 475

Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
           +VRD  R+HH ++G+CSC DYW
Sbjct: 476 VVRDSNRFHHIKNGVCSCNDYW 497



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 125/253 (49%), Gaps = 5/253 (1%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  L++ YA   S  +  A+  F+ +      ++N+++  +A++L   +A   +N +   
Sbjct: 62  GNSLISMYA--RSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADT 119

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            +     FTF   L     + A+ K +++HG +++ GY+    +   L+  Y+  G IEA
Sbjct: 120 GIG-ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 178

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A  VF+ M +R+++SW S+I+ + +  F   AL+++ +M       +  T V +LS+C+H
Sbjct: 179 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 238

Query: 203 VGALNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWN 260
           VG ++ G    + +  E G V  +     +VD+  + G L  A    + M    D L W 
Sbjct: 239 VGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWR 298

Query: 261 SMIVGYGVHGRGD 273
           +++    VHG  +
Sbjct: 299 TLLGACRVHGNTE 311



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 48/236 (20%)

Query: 135 AANGVIEAARSVFDNMPERDLVSWNSIISCYTQA-SFHLEALKLYERMRFEDVGLDGFTL 193
           AA+G ++ +R VF+ MPE +++SW +II+ Y Q+     EA++L+               
Sbjct: 6   AADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELF--------------- 50

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
                                  C+M       VGN+L+ MYA+ G ++ A   F  + +
Sbjct: 51  -----------------------CKMISASVNCVGNSLISMYARSGRMEDARKAFDILFE 87

Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313
           ++++S+N+++ GY  + + +EA   F ++   G    + TF  LL G +  G + +G E 
Sbjct: 88  KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKG-EQ 146

Query: 314 FHMMVSRYNLKPGIKHYGC----LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            H  +    LK G K   C    L+ +Y R G +E A +V N     + + W +++
Sbjct: 147 IHGRL----LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMI 198


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 177/542 (32%), Positives = 295/542 (54%), Gaps = 19/542 (3%)

Query: 23  GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
           G  LL+ Y  S  S       +F  ++     +W ++I ++ ++    +    +  M + 
Sbjct: 123 GNALLDMY--SNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLE 180

Query: 83  SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
            + RPD F  T  L A    ++L   + +HG+ IR+G E  + V+  LM  Y   G +E 
Sbjct: 181 GI-RPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEE 239

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           AR +FD++ ++D +SWN++I  Y++++   EA  L+  M  + +  +  T+ C+L + A 
Sbjct: 240 ARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAAS 298

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + +L  G  +H  A   G++E  +V NALVDMY KCG L  A  +F  +  ++++SW  M
Sbjct: 299 LSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIM 358

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I GYG+HGRG +AI+ F+QM  +G  PD+ +F  +L  CSH GL +EG  +F+ M + + 
Sbjct: 359 IAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHR 418

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           ++P +KHY C+VDL    G L++A E I T     D  +W +LL  C+IHRNV++ E   
Sbjct: 419 IEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVA 478

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           + + +LE  + G YVLLA IYA  +  E V + +  +   G++   G SWIE+  + H F
Sbjct: 479 EMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIF 538

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
             ++++HP    I   L+++  R +  G+   +    +   + +   +++   HS KLA+
Sbjct: 539 FAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALM--GADDAVHDEALCGHSSKLAV 596

Query: 502 AFGLATTPDGTSLRIVKNLRSIAY------------SRDLIVRDRVRYHHFRDGLCSCGD 549
           AFG+     G  +R+ KN R  ++             R++I+RD  R+HHF +G CSC  
Sbjct: 597 AFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRG 656

Query: 550 YW 551
           YW
Sbjct: 657 YW 658



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 130/256 (50%), Gaps = 1/256 (0%)

Query: 111 LHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170
           +HG++++ G+     V   L+  YA +  IE A  VFD MP+RD++SWNSII        
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGL 65

Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
           + +A++L+ RM  E   LD  TL+ ++ +C       +G  +H  +   G +    +GNA
Sbjct: 66  YDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNA 125

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           L+DMY+ C +  S   +F  M +++V+SW +MI  Y   G  D+    F++M + G  PD
Sbjct: 126 LLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPD 185

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
                  L   +    ++ G +  H    R  ++  +     L+++Y + G +E+A  + 
Sbjct: 186 VFAITSALDAFAGNESLKHG-KSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIF 244

Query: 351 NTSSPSDPVLWRTLLG 366
           +  +  D + W TL+G
Sbjct: 245 DHVTKKDTISWNTLIG 260



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 175/375 (46%), Gaps = 12/375 (3%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S+ +  A ++F+++      +WNS+I   A +    +A+  +  M +      D+ T   
Sbjct: 32  SNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEG-QELDSTTLLS 90

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            + AC +         +HG+ +R+G      +   L+  Y+      +   +F NM +++
Sbjct: 91  VMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKN 150

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +VSW ++I+ YT+A    +   L++ M  E +  D F +   L + A   +L  G  +H 
Sbjct: 151 VVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHG 210

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
            A   G  E + V NAL++MY KCG ++ A  +F  + K+D +SWN++I GY      +E
Sbjct: 211 YAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANE 270

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           A + F +ML+    P+++T   +L   +    +E G E     V R  L+        LV
Sbjct: 271 AFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFV-ANALV 328

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA---- 390
           D+Y + G L  A  + +  +  + + W  ++    +H     G  A+    Q++ +    
Sbjct: 329 DMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGR---GRDAIALFEQMKGSGIQP 385

Query: 391 SAGDYVLLATIYACT 405
            AG +   A +YAC+
Sbjct: 386 DAGSFS--AILYACS 398



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 9/163 (5%)

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
           G+ +H    + GF     V NAL+  YAK   ++ A  VF  M +RD++SWNS+I G   
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
           +G  D+A+  F +M + G   DS T L ++  C     V+    +   +V  Y+++ G+ 
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPAC-----VQSHYSFIGGVVHGYSVRTGLI 117

Query: 329 HY----GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
                   L+D+Y          ++       + V W  ++ S
Sbjct: 118 SETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITS 160


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 203/603 (33%), Positives = 311/603 (51%), Gaps = 86/603 (14%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A S     S A+ +F++        +N +IR++  +   ++A+  +  ML  + + PD +
Sbjct: 80  AYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFN-PDHY 138

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSG--------------YERC------------- 123
           TF   LKAC  +  L    ++H  +++ G              Y +C             
Sbjct: 139 TFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQM 198

Query: 124 ----VVVSTNLMRGYAANGVIEAA------------------------------------ 143
               VV   +++ GYA +G  + A                                    
Sbjct: 199 PYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQY 258

Query: 144 -RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
             ++F+ M +++L+SWN +I+ Y   S   EA+ L+ +M    +  D  T+  LL +C  
Sbjct: 259 IHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGD 318

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           + AL +G  LH+   +     ++ + NAL+DMYAKCG L+ A  VF +MR RDV+SW SM
Sbjct: 319 LSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSM 378

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           +  YG  G+G +A++ F +ML +G +PDSI F+ +L  CSH GL+++G  YF MM  +Y 
Sbjct: 379 MSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYG 438

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIA 380
           + P I+H+ C+VDL+GRAG++E+A   I    P +P   +W  LL +C++H  ++IG +A
Sbjct: 439 IVPRIEHFACMVDLFGRAGEVEEAYSFIK-QMPMEPNERVWGALLSACRVHSKMDIGLVA 497

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
              L QL    +G YVLL+ IYA     + V   R  +K  GIK  PG S +E+  QVH 
Sbjct: 498 ADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHT 557

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           F+  D+ HP A  IY +L+ ++ + K +GY   ++  A+     ED  E   A HSEKLA
Sbjct: 558 FLAGDQYHPQAKNIYGELDVLVGKMKELGYIP-QTESALHDVEVED-KECHLAIHSEKLA 615

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           I F +  T  GT +RI KNLR            S   SR++IVRD  R+HHF +G+CSCG
Sbjct: 616 IVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCG 675

Query: 549 DYW 551
           DYW
Sbjct: 676 DYW 678



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 152/309 (49%), Gaps = 28/309 (9%)

Query: 93  TFTLKACERV-------KALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGVIEAAR 144
            F+ +ACE +       K LNK   LH  ++ + + R    ++  LMR Y+A G    AR
Sbjct: 35  VFSKEACEVILDQYPGIKTLNK---LHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVAR 91

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            +FD   E+++V +N +I  Y   + ++EAL +++ M       D +T  C+L +C+ + 
Sbjct: 92  YIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLD 151

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
            L +G+ +H    ++G   ++++GNALV MY KCG L  A  V  +M  RDV+SWNSM+ 
Sbjct: 152 NLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVA 211

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
           GY   G+ D+A+   K+M     + D+ T   L     +  L  E V+Y H M  R   K
Sbjct: 212 GYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERMT-K 268

Query: 325 PGIKHYGCLVDLYGRAGKLEKA----LEVINTSSPSDPVLWRTLLGSC----------KI 370
             +  +  ++ +Y       +A    L++       D V   +LL +C          ++
Sbjct: 269 KNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRL 328

Query: 371 HRNVEIGEI 379
           H+ +E G +
Sbjct: 329 HKYIEKGNL 337


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 186/541 (34%), Positives = 295/541 (54%), Gaps = 23/541 (4%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N Y  S   SL  A+ +F++++N    AWN++I  +A+  +  QA+  +  M   +  
Sbjct: 204 LINMY--SKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRM-GPNDP 260

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA-NGVIEAAR 144
           +P+  TF   L AC  ++ L + + +H  V   GYE  +V+   L+  Y   +  +E AR
Sbjct: 261 KPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEAR 320

Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
            VF+ +  RD+++WN +I  Y Q     +AL ++++M+ E+V  +  TL  +LS+CA +G
Sbjct: 321 QVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLG 380

Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
           A   G  +H +         V + N+L++MY +CG+LD    VF+ +R + ++SW+++I 
Sbjct: 381 AKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIA 440

Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
            Y  HG     +  F ++L  G   D +T +  L  CSH G+++EGV+ F  MV  + L 
Sbjct: 441 AYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLA 500

Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
           P  +H+ C+VDL  RAG+LE A  +I +     D V W +LL  CK+H + +        
Sbjct: 501 PDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADK 560

Query: 384 LVQLEAASAGDYV-LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
           L +LE+      V LL+ +YA     + V +TR        +  PG S+IEI + VH+FV
Sbjct: 561 LFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRRAARKNPGCSYIEINDTVHEFV 617

Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIA 502
             DKSHP+ ++I  +++ +  + K  GY  D  +V    +  E+  E+   YHSEKLAIA
Sbjct: 618 AGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVL--HNVKEEEKEQMLCYHSEKLAIA 675

Query: 503 FGLATTPDGTSLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDY 550
           +GL +TP GT L IVKNLR+                R ++VRD  R+HHF +G CSC DY
Sbjct: 676 YGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDY 735

Query: 551 W 551
           W
Sbjct: 736 W 736



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/409 (29%), Positives = 209/409 (51%), Gaps = 10/409 (2%)

Query: 21  IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
           I G  L+  YA      L  A+  F+++       WN+LI  ++++     A+  Y  M+
Sbjct: 95  ILGTALITMYA--RCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMV 152

Query: 81  MASLS--RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
             S    +PD  TF+  L AC  V  +++ +E+    + SGY    +V   L+  Y+  G
Sbjct: 153 SKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCG 212

Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
            +E+AR VFD +  RD+++WN++IS Y +     +AL+L++RM   D   +  T + LL+
Sbjct: 213 SLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLT 272

Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC-GNLDSAFCVFSRMRKRDVL 257
           +C ++  L  G  +HR   E G+   + +GN L++MY KC  +L+ A  VF R+R RDV+
Sbjct: 273 ACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVI 332

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           +WN +IV Y  +G+  +A+  FKQM +    P+ IT   +L  C+  G   +G +  H +
Sbjct: 333 TWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG-KAVHAL 391

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIG 377
           ++    K  +     L+++Y R G L+  + V         V W TL+ +   H +   G
Sbjct: 392 IASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTG 451

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGI 423
                 L+Q E  +A D  +++T+ AC+     +EGV     ++  +G+
Sbjct: 452 LEHFWELLQ-EGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGL 499



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 194/373 (52%), Gaps = 8/373 (2%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S++ A  +F+ I++P + +W  ++ AFA++    +A+ YY  M++  L RPD   F   +
Sbjct: 7   SVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL-RPDGAMFVVAI 65

Query: 97  KACERVKALNKCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
             C   K L + Q LH  ++ +   E  +++ T L+  YA    +E AR  FD M ++ L
Sbjct: 66  GVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTL 125

Query: 156 VSWNSIISCYTQASFHLEALKLYERM---RFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
           V+WN++I+ Y++   H  ALK+Y+ M     E +  D  T    L +C+ VG ++ G  +
Sbjct: 126 VTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREI 185

Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
                  G+     V NAL++MY+KCG+L+SA  VF R++ RDV++WN+MI GY   G  
Sbjct: 186 EARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAA 245

Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
            +A+  F++M      P+ +TF+GLL  C++   +E+G    H  V  +  +  +     
Sbjct: 246 TQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQG-RAIHRKVKEHGYESDLVIGNV 304

Query: 333 LVDLYGR-AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
           L+++Y + +  LE+A +V       D + W  L+ +   +   +      K + QLE  +
Sbjct: 305 LLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQM-QLENVA 363

Query: 392 AGDYVLLATIYAC 404
             +  L   + AC
Sbjct: 364 PNEITLSNVLSAC 376



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
           Y   G +  A +VF  +   + VSW  I++ + +   + EAL  Y RM  E +  DG   
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
           V  +  C+    L  G  LH +  E   +E  + +G AL+ MYA+C +L+ A   F  M 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA---GFHPDSITFLGLLCGCSHQGLVEE 309
           K+ +++WN++I GY  +G    A+  ++ M+     G  PD+ITF   L  CS  G + +
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQ 181

Query: 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           G E     V+       I     L+++Y + G LE A +V +     D + W T++
Sbjct: 182 GREIEARTVASGYASDSIVQ-NALINMYSKCGSLESARKVFDRLKNRDVIAWNTMI 236



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 62/133 (46%)

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
           MY KCG++  A  VF  +   + +SW  ++  +  +G   EA+ ++++M++ G  PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
           F+  +  CS    +++G     M++    L+  I     L+ +Y R   LE A +  +  
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 354 SPSDPVLWRTLLG 366
                V W  L+ 
Sbjct: 121 GKKTLVTWNALIA 133


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 177/441 (40%), Positives = 260/441 (58%), Gaps = 16/441 (3%)

Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RF 183
           V+ T ++ GY   G +  A   F+ MP R+LVSWN++++ Y + S   +AL+L+  M R 
Sbjct: 175 VLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVRE 234

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
            +V  +  TL  +L  C+++ AL  G  +H+   ++    ++ VG +LV MY KCG+L S
Sbjct: 235 ANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSS 294

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F  M  RDV++WN+MI GY  HG G EAI+ F++M   G  P+ ITF+ +L  C H
Sbjct: 295 ACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIH 354

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWR 362
            GL + G++ F  M   Y ++P + HY C+VDL  RAGKLE+A++ I +      P  + 
Sbjct: 355 TGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYG 414

Query: 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422
           TLL +C++++N+E  E+A   L++ +  SAG YV LA IYA     + V+R R+ +K N 
Sbjct: 415 TLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNT 474

Query: 423 IKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGS 482
           +  TPG+SWIEI   +H+F  +D+ HP   +I+ KL ++  R K +GY  D  L  V   
Sbjct: 475 VVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPD--LDFVLHD 532

Query: 483 SSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLI 530
             E    +    HSEKLAIAFGL +T  G +LRI KNLR            S+   R++I
Sbjct: 533 VDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREII 592

Query: 531 VRDRVRYHHFRDGLCSCGDYW 551
           +RD  R+HHFR G CSC DYW
Sbjct: 593 LRDTTRFHHFRGGHCSCDDYW 613



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 98/191 (51%), Gaps = 1/191 (0%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WN+++  + ++     A+  +  M+  +  +P+  T +  L  C  + AL   +++H +
Sbjct: 207 SWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQW 266

Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
            ++    R + V T+L+  Y   G + +A  +F  M  RD+V+WN++IS Y Q     EA
Sbjct: 267 CMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEA 326

Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM-GFVESVYVGNALVD 233
           + L+ERM+ E V  +  T V +L++C H G  + GI       E+ G    V   + +VD
Sbjct: 327 INLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVD 386

Query: 234 MYAKCGNLDSA 244
           +  + G L+ A
Sbjct: 387 LLCRAGKLERA 397



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 116/253 (45%), Gaps = 17/253 (6%)

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           VV    L+  + A+G  + AR +F +MP RD+ SWN+++S  +++    EA  ++  M  
Sbjct: 80  VVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPV 139

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
            +      +   ++S  A  G ++      R A E    E   +  A+V  Y   GN+  
Sbjct: 140 RN----SVSWNAMVSGFACSGDMSTAEEWFRNAPEK---EDAVLWTAMVSGYMDIGNVVK 192

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM-AGFHPDSITFLGLLCGCS 302
           A   F  M  R+++SWN+++ GY  +   D+A+  F+ M+  A   P++ T   +L GCS
Sbjct: 193 AIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCS 252

Query: 303 HQGLVEEGVEY----FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
           +   +  G +       +++SR NL  G      LV +Y + G L  A  +       D 
Sbjct: 253 NLSALGFGKQIHQWCMKLLLSR-NLTVGTS----LVSMYCKCGDLSSACILFGEMHTRDV 307

Query: 359 VLWRTLLGSCKIH 371
           V W  ++     H
Sbjct: 308 VAWNAMISGYAQH 320



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           LS A +LF ++      AWN++I  +AQ     +AI  +  M    +  P+  TF   L 
Sbjct: 292 LSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGV-EPNWITFVVVLT 350

Query: 98  ACER-------VKALNKCQELHGFVIRSGYERCVV 125
           AC         ++     QEL+G   R  +  C+V
Sbjct: 351 ACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMV 385


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 178/483 (36%), Positives = 270/483 (55%), Gaps = 25/483 (5%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           +++ F  I+ P    WN L+  F Q      A+ ++  M    +  P+T T +  L AC 
Sbjct: 453 SEMKFQGIE-PDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMD-PNTTTISGALAACG 510

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           +V+ L   +E+HG+V+R+  E    V + L+  Y+    +E A SVF  +  RD+V WNS
Sbjct: 511 QVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNS 570

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           IIS   Q+   + AL L   M   +V ++  T+V  L +C+ + AL  G  +H+     G
Sbjct: 571 IISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCG 630

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
                ++ N+L+DMY +CG++  +  +F  M +RD++SWN MI  YG+HG G +A++ F+
Sbjct: 631 LDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQ 690

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
                G  P+ ITF  LL  CSH GL+EEG +YF MM + Y + P ++ Y C+VDL  RA
Sbjct: 691 XFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRA 750

Query: 341 GKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G+  + LE I    P +P   +W +LLG+C+IH N ++ E A + L +LE  S+G+YVL+
Sbjct: 751 GQFNETLEFIE-KMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLM 809

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
           A IY+     E  A+ R L+K  G+   PG SWIE+  ++H FVV D SHP        +
Sbjct: 810 ANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHP-------LM 862

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           E+I  +   +   +DE   ++ G             HSEK+A+AFGL +T  GT LRI+K
Sbjct: 863 EQISGKDGKLDVDEDEKEFSLCG-------------HSEKIALAFGLISTTXGTPLRIIK 909

Query: 519 NLR 521
           NLR
Sbjct: 910 NLR 912



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 161/357 (45%), Gaps = 38/357 (10%)

Query: 51  PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQE 110
           P   +W +LI    Q+    +A+  +  M++  + +P++ T    + AC  +  L   +E
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGV-KPNSITIASAVSACTNLSLLRHGRE 383

Query: 111 LHGFVIR-SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
           +HG+ I+    +  ++V  +L+  YA    +E AR  F  + + DLVSWN++++ Y    
Sbjct: 384 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRG 443

Query: 170 FHLEALKLYERMRFEDVGLD---------GF--------------------------TLV 194
            H EA++L   M+F+ +  D         GF                          T+ 
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTIS 503

Query: 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
             L++C  V  L +G  +H          S  VG+AL+ MY+ C +L+ A  VFS +  R
Sbjct: 504 GALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTR 563

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           DV+ WNS+I      GR   A+   ++M ++    +++T +  L  CS    + +G E  
Sbjct: 564 DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE-I 622

Query: 315 HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
           H  + R  L         L+D+YGR G ++K+  + +     D V W  ++    +H
Sbjct: 623 HQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMH 679



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 128/260 (49%), Gaps = 4/260 (1%)

Query: 79  MLMAS--LSRPDTFT--FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGY 134
           ML++S  L+ PD     +   L+ C ++  L    ++H  ++ +G + C  + + L+  Y
Sbjct: 75  MLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVY 134

Query: 135 AANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLV 194
              G +E AR +FD M ER++ SW +I+  Y     + E +KL+  M  E V  D F   
Sbjct: 135 CQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFP 194

Query: 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254
            +  +C+ +    +G  ++     +GF  +  V  +++DM+ KCG +D A   F  +  +
Sbjct: 195 KVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 254

Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314
           DV  WN M+ GY   G   +A+     M ++G  PD +T+  ++ G +  G  EE  +YF
Sbjct: 255 DVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYF 314

Query: 315 HMMVSRYNLKPGIKHYGCLV 334
             M    + KP +  +  L+
Sbjct: 315 LEMGGLKDFKPNVVSWTALI 334



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 151/329 (45%), Gaps = 41/329 (12%)

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-----ERDLVSWNSIISCYTQASFHL 172
           SG +   V    ++ GYA +G  E A   F  M      + ++VSW ++I+   Q  +  
Sbjct: 285 SGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDF 344

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGNAL 231
           EAL ++ +M  E V  +  T+   +S+C ++  L  G  +H    ++  ++S + VGN+L
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           VD YAKC +++ A   F  +++ D++SWN+M+ GY + G  +EAI    +M   G  PD 
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464

Query: 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSR-------------------YNLKPGIKHYG- 331
           IT+ GL+ G +  G  +  +E+F  M S                     NLK G + +G 
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524

Query: 332 --------------CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIG 377
                          L+ +Y     LE A  V +  S  D V+W +++ +C       + 
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACA-QSGRSVN 583

Query: 378 EIAMKNLVQLEAASAGDYVLLATIYACTK 406
            + +   + L         +++ + AC+K
Sbjct: 584 ALDLLREMNLSNVEVNTVTMVSALPACSK 612


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 184/525 (35%), Positives = 278/525 (52%), Gaps = 19/525 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ LF+++      +WN++I     +    +A F    M+    S   +  F   ++A  
Sbjct: 185 ARRLFDEMPEKNILSWNTIIGGLVDAGDYFEA-FRLFLMMWQXFSDAGSRMFVTMIRASA 243

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +  +   ++LH   +++G    V V+  L+  Y+  G IE A+ VFD MPE+  V WNS
Sbjct: 244 GLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNS 303

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           II+ Y    +  EAL +Y  MR   V +D FT   ++  CA + +L      H      G
Sbjct: 304 IIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHG 363

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F   +    ALVD+Y+K G ++ A  VF  M  ++V+SWN++I GYG HGRG EA+  F+
Sbjct: 364 FGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFE 423

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +ML  G  P+ +TFL +L  CS+ GL + G E F  M   + +KP   HY C+++L GR 
Sbjct: 424 RMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGRE 483

Query: 341 GKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
           G L++A  +I   +P  P   +W  LL +C++H+N E+G+ A + L  +      +YV+L
Sbjct: 484 GLLDEAFALIK-DAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVL 542

Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
             IY  +   E  A   + +K  G++  P  SWIEI  Q + F+  DK H  +  IY+KL
Sbjct: 543 LNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKL 602

Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
           +E+M      GY      +       E   E+   YHSEKLAIAFGL  T D T L+IV+
Sbjct: 603 DELMLEISKHGYVPQXKFLLPDVDEQE---ERVLLYHSEKLAIAFGLINTSDWTPLQIVQ 659

Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           + R            ++   R+++VRD  R+HHF+DG CSCGDYW
Sbjct: 660 SHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 165/321 (51%), Gaps = 8/321 (2%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           D+ T+   + AC  +K++   +++  ++I SG +    +   ++  +   G++  AR +F
Sbjct: 130 DSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLF 189

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERM--RFEDVGLDGFTLVCLLSSCAHVGA 205
           D MPE++++SWN+II     A  + EA +L+  M   F D G   F  V ++ + A +G 
Sbjct: 190 DEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMF--VTMIRASAGLGL 247

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           +  G  LH  + + G    V+V  AL+DMY+KCG+++ A CVF +M ++  + WNS+I G
Sbjct: 248 IFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAG 307

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y +HG  +EA+S + +M  +G   D+ TF  ++  C+    +E   +  H  + R+    
Sbjct: 308 YALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQA-HAGLVRHGFGL 366

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH-RNVEIGEIAMKNL 384
            I     LVDLY + G++E A  V +     + + W  L+     H R VE  E+  + L
Sbjct: 367 DIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERML 426

Query: 385 VQLEAASAGDYVLLATIYACT 405
              E         LA + AC+
Sbjct: 427 --HEGMVPNHVTFLAVLSACS 445



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 152/324 (46%), Gaps = 44/324 (13%)

Query: 33  SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
           S   S+  AQ +F+Q+    T  WNS+I  +A      +A+  Y  M  + + + D FTF
Sbjct: 278 SKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGV-KIDNFTF 336

Query: 93  TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
           +  ++ C R+ +L   ++ H  ++R G+   +V +T L+  Y+  G IE A+ VFD MP 
Sbjct: 337 SIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPH 396

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG--I 210
           ++++SWN++I+ Y      +EA++++ERM  E +  +  T + +LS+C++ G  + G  I
Sbjct: 397 KNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEI 456

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
           F           ES+   + +                     K   + +  MI   G  G
Sbjct: 457 F-----------ESMSRDHKI---------------------KPRAMHYACMIELLGREG 484

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR-YNLKP-GIK 328
             DEA +  K    A F P    +  LL  C     V +  E       + Y + P  + 
Sbjct: 485 LLDEAFALIKD---APFKPTVNMWAALLTACR----VHKNFELGKFAAEKLYGMGPEKLS 537

Query: 329 HYGCLVDLYGRAGKLEKALEVINT 352
           +Y  L+++Y  +G+LE+A  VI T
Sbjct: 538 NYVVLLNIYNXSGRLEEAAAVIQT 561


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 192/560 (34%), Positives = 300/560 (53%), Gaps = 50/560 (8%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++  A+ LF++  +     +N+++  +A+     +A+   + ML     RPD  T    +
Sbjct: 282 AIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQG-PRPDRVTMLSAI 340

Query: 97  KACERVKALNKCQELHGFVIRSGYE-------------------------------RCVV 125
            A  ++  L   +  HG+VIR+G E                               + VV
Sbjct: 341 SASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVV 400

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
              +L  G+  NG +E+A  VF+ +PER+ V WN++IS   Q S   +A++L+  M+ E 
Sbjct: 401 SWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEG 460

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           +  D  T++ + S+C ++GA  +  ++H    + G    + +  ALVDM+A+CG+  SA 
Sbjct: 461 IKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAM 520

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF++M +RDV +W + I    + G G+ A   F QML+ G  PD + F+ +L  CSH G
Sbjct: 521 QVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGG 580

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRT 363
            VE+G+  F +M   + + P I+HYGC+VDL GRAG L +A ++I  S P +P  V+W +
Sbjct: 581 QVEQGLHIFSLM-EDHGISPQIEHYGCMVDLLGRAGLLREAFDLIK-SMPMEPNDVVWGS 638

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LL +C++H+NVE+   A + + +L    AG +VLL+ IYA       VAR R  ++  G+
Sbjct: 639 LLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGV 698

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
           +  PG S +++   +H+F   D+SHP+   I   L+E+  R    G+  D S V +    
Sbjct: 699 RKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDE 758

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIV 531
            E   E   + HSEKLAIAFGL  T     +R+VKNLR            SI Y+R++IV
Sbjct: 759 QEK--EYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIV 816

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RD  R+H FR GLCSC DYW
Sbjct: 817 RDNNRFHFFRQGLCSCCDYW 836



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 176/350 (50%), Gaps = 18/350 (5%)

Query: 26  LLNSYA-ISVSSSLSYAQLLFNQIQNPQTQ-----AWNSLIRAFAQSLSPLQAIFYYNHM 79
           L+N+ A I+   SL YA+  F   +            NSLIR ++ +    +AI  Y  M
Sbjct: 63  LVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRM 122

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           L+  ++ P+ +TF F L  C ++ A  +  ++HG V++ G E  V +   L+  YA  G 
Sbjct: 123 LVLGVT-PNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGH 181

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
           ++    VF+ M ER++VSW S+I  Y +     EA+ L+  M    +     T+VC++S+
Sbjct: 182 MDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISA 241

Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
           CA +  L+MG  +     E+G   +  + NALVDMY KCG +D+A  +F     R+++ +
Sbjct: 242 CAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLY 301

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           N+++  Y   G   EA++   +ML  G  PD +T L  +   +        V+ F+  V 
Sbjct: 302 NTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQL------VDLFYGKVC 355

Query: 320 R-YNLKPGIKHY----GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364
             Y ++ G++ +      ++D+Y + GK E A  V +  S    V W +L
Sbjct: 356 HGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSL 405



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 180/399 (45%), Gaps = 34/399 (8%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           + +   +F  +      +W SLI  +A+   P +A+  +  M+ A + RP + T    + 
Sbjct: 182 MDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGI-RPSSVTMVCVIS 240

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
           AC +++ L+  + +  ++   G +   V+   L+  Y   G I+AA+ +FD   +R+LV 
Sbjct: 241 ACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVL 300

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           +N+I+S Y +     EAL + + M  +    D  T++  +S+ A +  L  G   H    
Sbjct: 301 YNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVI 360

Query: 218 EMGFVESVYVGNALVDMYAKC-------------------------------GNLDSAFC 246
             G      +GN ++DMY KC                               G+++SA+ 
Sbjct: 361 RNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWE 420

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF+++ +R+ + WN+MI G       ++AI  F++M   G   D +T +G+   C + G 
Sbjct: 421 VFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLG- 479

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
             E  ++ H  + +  +   ++    LVD++ R G  + A++V N  +  D   W   +G
Sbjct: 480 APELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIG 539

Query: 367 SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           +  +  N E G   + N + ++       + +  + AC+
Sbjct: 540 TMAMEGNGE-GATGLFNQMLIQGVKPDVVLFVQVLTACS 577



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 139/281 (49%), Gaps = 12/281 (4%)

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRG---YAANGVIEAARSVF---- 147
           +L+ C   K LN+ ++LH  + ++G ++     T L+      A+   ++ AR  F    
Sbjct: 31  SLRCC---KTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFK 87

Query: 148 -DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
            D   +  L   NS+I  Y+ A    EA+ LY RM    V  + +T   +LS C  + A 
Sbjct: 88  EDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAF 147

Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
             GI +H    +MG  E V++ N L+  YA+CG++D    VF  M +R+V+SW S+I GY
Sbjct: 148 CEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGY 207

Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
               R  EA+S F +M+ AG  P S+T + ++  C+    ++ G E     +    LK  
Sbjct: 208 ARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMG-ERVCAYIGELGLKLN 266

Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
                 LVD+Y + G ++ A  + +     + VL+ T+L +
Sbjct: 267 KVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSN 307



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 6/166 (3%)

Query: 244 AFCVFSR-MRKRDVL-SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
           AF +F   +R  D L   NS+I GY   G G EAI  + +ML+ G  P+  TF  +L GC
Sbjct: 82  AFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGC 141

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
           +      EG++  H  V +  L+  +    CL+  Y   G ++   +V    S  + V W
Sbjct: 142 TKIAAFCEGIQ-VHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSW 200

Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAA-SAGDYVLLATIYACTK 406
            +L+  C   R     E        +EA        ++  I AC K
Sbjct: 201 TSLI--CGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAK 244


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/490 (35%), Positives = 270/490 (55%), Gaps = 4/490 (0%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+ +   ++     +W S+I  + Q      A+  +  M    +  PD       + 
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW-PDNIGLASAIS 454

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C  + A+ +  ++H  +  SGY   V +   L+  YA  G I  A S F+ M  +D ++
Sbjct: 455 GCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGIT 514

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
            N ++S + Q+  H EALK++ RM    V  + FT V  LS+ A++  +  G  +H    
Sbjct: 515 GNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI 574

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           + G      VGNAL+ +Y KCG+ + A   FS M +R+ +SWN++I     HGRG EA+ 
Sbjct: 575 KTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALD 634

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F QM   G  P+ +TF+G+L  CSH GLVEEG+ YF  M   Y ++P   HY C++D++
Sbjct: 635 LFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIF 694

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAG+L++A + I      +D ++WRTLL +CK+H+N+E+GE A K+L++LE   +  YV
Sbjct: 695 GRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYV 754

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
           LL+  YA T+      + RK+++  G++  PG SWIE+ N VH F V D+ HP A+ IY 
Sbjct: 755 LLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYN 814

Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
            L  I  R   +GY +++    +     ++  + +   HSEKLA+ FGL + P    LR+
Sbjct: 815 FLAVINDRVAKVGYKQEK--YHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRV 872

Query: 517 VKNLRSIAYS 526
           +KNLR   Y+
Sbjct: 873 IKNLRVEKYT 882



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 2/275 (0%)

Query: 92  FTFTLKACE-RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           F   L+AC    +      E+H   +  G  +  +V   L+  Y+ NG++  AR VF+ +
Sbjct: 44  FACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL 103

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
             RD VSW +++S Y Q     EAL LY +M    V    + L  +LSSC        G 
Sbjct: 104 SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163

Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
            +H    + GF   ++VGNA++ +Y +CG+   A  VF  M  RD +++N++I G+   G
Sbjct: 164 LIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCG 223

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
            G+ A+  F++M  +G  PD +T   LL  C+  G +++G +  H  + +  +       
Sbjct: 224 HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQ-LHSYLFKAGISSDYIME 282

Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           G L+DLY + G +E AL + N+S  ++ VLW  +L
Sbjct: 283 GSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLML 317



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 199/425 (46%), Gaps = 8/425 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           S   A+ +F  + +  T  +N+LI   AQ      A+  +  M  + LS PD  T +  L
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS-PDCVTISSLL 251

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
            AC  +  L K  +LH ++ ++G     ++  +L+  Y   G +E A  +F++    ++V
Sbjct: 252 AACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVV 311

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
            WN ++  + Q +   ++ +L+ +M+   +  + FT  C+L +C     +++G  +H ++
Sbjct: 312 LWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLS 371

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
            + GF   +YV   L+DMY+K G L+ A  V   ++++DV+SW SMI GY  H    +A+
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDAL 431

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKPGIKHYGCLVD 335
           + FK+M   G  PD+I     + GC+    + +G++ +  + VS Y+    I  +  LV+
Sbjct: 432 AAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSI--WNALVN 489

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           LY R G++ +A          D +    L+          + E A+K  ++++ +     
Sbjct: 490 LYARCGRIREAFSSFEEMELKDGITGNGLVSG---FAQSGLHEEALKVFMRMDQSGVKHN 546

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           V                +  K I +  IKT   +   E+GN +        S  DA M +
Sbjct: 547 VFTFVSALSASANLAEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSFEDAKMEF 605

Query: 456 RKLEE 460
            ++ E
Sbjct: 606 SEMSE 610



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 178/362 (49%), Gaps = 10/362 (2%)

Query: 6   HARYV--GLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           HA+ V  GL K R    I G  L++ Y  S +  +  A+ +F ++      +W +++  +
Sbjct: 65  HAKAVTRGLGKYR----IVGNLLIDLY--SKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           AQ+    +A+  Y  M  A +  P  +  +  L +C + +   + + +H    + G+   
Sbjct: 119 AQNGLGEEALGLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
           + V   ++  Y   G    A  VF +MP RD V++N++IS + Q      AL+++E M+F
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
             +  D  T+  LL++CA +G L  G  LH    + G      +  +L+D+Y KCG++++
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
           A  +F+   + +V+ WN M+V +G      ++   F QM  AG  P+  T+  +L  C+ 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
              ++ G E  H +  +   +  +   G L+D+Y + G LEKA  V+      D V W +
Sbjct: 358 TREIDLG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTS 416

Query: 364 LL 365
           ++
Sbjct: 417 MI 418



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 128/273 (46%), Gaps = 15/273 (5%)

Query: 11  GLNKARQAHEIHGEWLLNSYAISVS------------SSLSYAQLLFNQIQNPQTQAWNS 58
           G+N  RQ  +IH    ++ Y+  VS              +  A   F +++       N 
Sbjct: 458 GINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNG 517

Query: 59  LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118
           L+  FAQS    +A+  +  M  + + + + FTF   L A   +  + + +++H  VI++
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGV-KHNVFTFVSALSASANLAEIKQGKQIHARVIKT 576

Query: 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           G+     V   L+  Y   G  E A+  F  M ER+ VSWN+II+  +Q    LEAL L+
Sbjct: 577 GHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLF 636

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAK 237
           ++M+ E +  +  T + +L++C+HVG +  G+ +   ++ E G          ++D++ +
Sbjct: 637 DQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGR 696

Query: 238 CGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGVH 269
            G LD A      M    D + W +++    VH
Sbjct: 697 AGQLDRAKKFIEEMPIAADAMVWRTLLSACKVH 729


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 188/524 (35%), Positives = 283/524 (54%), Gaps = 20/524 (3%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           +F+++       W ++I A+ Q+  P +A+  +  M        D+        A  ++ 
Sbjct: 14  IFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQLG 73

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
            +     +HG+  R      + V  +++  +   G  E AR VFD M ERD++SWNS++S
Sbjct: 74  DVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLS 133

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            YTQ     EAL L++ MR  D      T + ++S+CA++G  ++G   H    +     
Sbjct: 134 GYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEI 193

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRM--RKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
              + NAL+DMYAKCG+L+ A  +F+ +   +R+  SWN +I GYG+HG G EA+  F +
Sbjct: 194 DTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSR 253

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           M   G  P+  TF  +L  CSH GL++EG + F  M  R ++    KH+ C+VD+ GRAG
Sbjct: 254 MQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEM-KRLSVTLEDKHHACVVDMLGRAG 312

Query: 342 KLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            L++A ++I    S PSD V W  LL +CKIH N+E+G+ A  NL+QLE    G YVL++
Sbjct: 313 LLQEAFDLIKEMPSPPSDGV-WGALLLACKIHGNMELGKTAASNLLQLEPNHTGYYVLMS 371

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            IYA +   + V + R+ +K+ G+K    +S IE G  +  F   D+ +P    +Y+K+E
Sbjct: 372 NIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQENPYRHEVYKKME 431

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
            +    K  GY  D S  A+     ED  E+   YHSEKLA+AFG+     G  +R+ KN
Sbjct: 432 SLAIEMKMAGYVPDLS-CALHDVEEED-KERMLNYHSEKLAVAFGVLKIDPGMVIRVTKN 489

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S  Y R +IVRD  R+HHF+ G CSC DYW
Sbjct: 490 LRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 147/278 (52%), Gaps = 11/278 (3%)

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL-DGFT 192
           YA  G+    R +FD M  +DLV W ++I+ Y QA    EAL L+++M+ E+  L D   
Sbjct: 2   YAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIA 61

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
           +V + S+   +G +     +H  A     +E + VGN+++ M+ KCGN + A  VF  M 
Sbjct: 62  VVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMM 121

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           +RDV+SWNSM+ GY  +G+  EA+  F +M  +   P  +T L ++  C++ G    G +
Sbjct: 122 ERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRK 181

Query: 313 YFHMMV-SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL--WRTLLGSCK 369
           +   +V SR  +   + +   L+D+Y + G LEKA+++ N   P++     W  L+    
Sbjct: 182 FHDFIVDSRMEIDTNLSN--ALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYG 239

Query: 370 IHRNVEIGEIAMK--NLVQLEAASAGDYVLLATIYACT 405
           +H +   G+ A++  + +Q E      +   + + AC+
Sbjct: 240 MHGH---GKEALELFSRMQEEGVEPNHFTFTSILSACS 274



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 129/278 (46%), Gaps = 24/278 (8%)

Query: 12  LNKARQAHEIHGEWLLNSY--AISVSSSL----------SYAQLLFNQIQNPQTQAWNSL 59
           L   + AH +HG     S    + V +S+            A+L+F+ +      +WNS+
Sbjct: 72  LGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSM 131

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           +  + Q+    +A+  ++ M   S  +P   T    + AC  +   +  ++ H F++ S 
Sbjct: 132 LSGYTQNGQATEALLLFDEM-RDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSR 190

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEALKL 177
            E    +S  LM  YA  G +E A  +F+ +P  ER+  SWN +IS Y       EAL+L
Sbjct: 191 MEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALEL 250

Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN----ALVD 233
           + RM+ E V  + FT   +LS+C+H G ++ G    +   EM  + SV + +     +VD
Sbjct: 251 FSRMQEEGVEPNHFTFTSILSACSHAGLIDEG---RKCFAEMKRL-SVTLEDKHHACVVD 306

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLS-WNSMIVGYGVHG 270
           M  + G L  AF +   M        W ++++   +HG
Sbjct: 307 MLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHG 344



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM-AGFHPDSI 292
           MYAKCG       +F  M  +D++ W +MI  Y    + +EA+  FK+M    G   DSI
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
             + +       G V +     H    R +L   +     ++ ++ + G  EKA  V + 
Sbjct: 61  AVVSVASAVGQLGDV-KNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDM 119

Query: 353 SSPSDPVLWRTLL 365
               D + W ++L
Sbjct: 120 MMERDVISWNSML 132


>gi|387169524|gb|AFJ66185.1| hypothetical protein 11M19.3 [Arabidopsis halleri]
          Length = 511

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 174/443 (39%), Positives = 268/443 (60%), Gaps = 22/443 (4%)

Query: 125 VVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-R 182
           V +TNL+       G    A+ V  N  ++++++WN +I  Y +   + EALK  + M  
Sbjct: 75  VCNTNLIIESLMKIGESSLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLS 134

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
           F D+  + F+    L++CA +G L+   ++H +  + G   +  + +ALVD+YAKCG+++
Sbjct: 135 FSDIKPNKFSFASSLAACARLGDLHHAKWVHSLMIDAGIELNAILSSALVDVYAKCGDIE 194

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
           ++  VF  +++ DV  WN+MI G+  HG   EAI  F +M      PDSITFLGLL  CS
Sbjct: 195 TSREVFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACS 254

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VL 360
           H GL+ +G  YF +M  R++++P ++HYG +VDL GRAG++++A E+I  S P +P  V+
Sbjct: 255 HCGLLGKGKVYFDIMSQRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIE-SMPIEPDVVI 313

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420
           WR+LL S + ++N E+GEIA++NL +   A +GDYVLL+ IY+ TK  E   + R+L+  
Sbjct: 314 WRSLLSSSRTYKNPELGEIAIQNLSK---AKSGDYVLLSNIYSTTKKWESAQKVRELMTK 370

Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
            GI+   G SW+E G  +H+F   D SH +   IY+ LE ++ + K  G+  D  LV + 
Sbjct: 371 EGIRKAKGKSWVEYGGVIHRFKAGDTSHIEIKAIYKVLEGLIQKTKSEGFVSDTDLVLMD 430

Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
            S  E   E++  YHSEKLA+A+ +  +  GT +RI KN+R            S   +R 
Sbjct: 431 VSEEEK--EENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRV 488

Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
           +I+RDR+R+H F DGLCSC DYW
Sbjct: 489 IIMRDRIRFHRFEDGLCSCKDYW 511



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 115/227 (50%), Gaps = 2/227 (0%)

Query: 39  SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           S A+ +     +     WN +I  + +++   +A+    +ML  S  +P+ F+F  +L A
Sbjct: 92  SLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKPNKFSFASSLAA 151

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
           C R+  L+  + +H  +I +G E   ++S+ L+  YA  G IE +R VF ++   D+  W
Sbjct: 152 CARLGDLHHAKWVHSLMIDAGIELNAILSSALVDVYAKCGDIETSREVFYSVKRNDVSIW 211

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIAC 217
           N++I+ +       EA++++  M  E V  D  T + LL++C+H G L  G ++   ++ 
Sbjct: 212 NAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLLGKGKVYFDIMSQ 271

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
                  +    A+VD+  + G +  A+ +   M  + DV+ W S++
Sbjct: 272 RFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLL 318


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 206/599 (34%), Positives = 308/599 (51%), Gaps = 83/599 (13%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           AIS+S +L YA+ L      P    +N+L+R +++S  P  ++  +  M+      PD+F
Sbjct: 215 AISISDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSF 274

Query: 91  TFTFTLKACERVKALNK-----CQEL------HGFVIRS-----------GYERCV---- 124
           +F F +KA    ++L       CQ L      H FV  +           G+ R V    
Sbjct: 275 SFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEM 334

Query: 125 ----VVSTN--------------------------------LMRGYAANGVIEAARSVFD 148
               +V+ N                                ++ GY   G +E A+ +F 
Sbjct: 335 PQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFS 394

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            MP RD VSW+++I  ++      E+   +  +   ++  +  +L  +LS+C+  GA   
Sbjct: 395 EMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEF 454

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMIVGYG 267
           G  LH    + G+   V V NAL+DMY++CGN+  A  VF  M+ KR ++SW SMI G  
Sbjct: 455 GKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLA 514

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
           +HG G+EAI  F +M  +G  PD I+F+ LL  CSH GL++EG  YF  M   Y+++P +
Sbjct: 515 MHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAV 574

Query: 328 KHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
           +HYGC+VDLYGR+GKL+KA   I     P   ++WRTLLG+C  H N+E+ E   + L +
Sbjct: 575 EHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNE 634

Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
           L+  ++GD VLL+ +YA     + VA  RK +    IK    WS +E+G  ++KF   +K
Sbjct: 635 LDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSLVEVGKTMYKFTACEK 694

Query: 447 SHPDADMIYRKLEEIMHRAK-FIGYTKD--ESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
                   + KL+EI+ R +   GY  +   +L  V     ED + K    HSEKLA+AF
Sbjct: 695 KKEIDIEAHEKLKEIILRLRDEAGYAPEVASALYDVEEEEKEDQVSK----HSEKLALAF 750

Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDY 550
            LA  P G ++RIVKNLR            S  Y  ++++RDR R+H F+DG CSCGDY
Sbjct: 751 ALARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVEIVIRDRNRFHSFKDGSCSCGDY 809



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 120/252 (47%), Gaps = 4/252 (1%)

Query: 22  HGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81
           H  W +       +  L  A+ +F+++ +    +W+++I  F+ + S  ++  Y+  +L 
Sbjct: 370 HTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLR 429

Query: 82  ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
           A + RP+  + T  L AC +  A    + LHGFV +SGY   V V+  L+  Y+  G + 
Sbjct: 430 AEM-RPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVP 488

Query: 142 AARSVFDNMPE-RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
            AR VF+ M E R +VSW S+I+         EA++++  M    V  D  + + LL +C
Sbjct: 489 MARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYAC 548

Query: 201 AHVGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLS 258
           +H G +  G  +  ++        +V     +VD+Y + G L  A+    +M      + 
Sbjct: 549 SHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIV 608

Query: 259 WNSMIVGYGVHG 270
           W +++     HG
Sbjct: 609 WRTLLGACSSHG 620



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/375 (20%), Positives = 148/375 (39%), Gaps = 75/375 (20%)

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMR--GYAANGVIEAARSVFDNMPERDLV 156
           C+ ++AL    ++HGF I+SG +        L+     + +  +  AR +    PE D  
Sbjct: 182 CKNLRALT---QIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAF 238

Query: 157 SWNSIISCYTQASFHLEALKLY-ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
            +N+++  Y+++     ++ ++ E MR   +  D F+   ++ + A+  +L  G  +H  
Sbjct: 239 MFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQ 298

Query: 216 ACEMGFVESVYVGNALVDMYAKCG-------------------------------NLDSA 244
           A + G    ++V   L+ MY +CG                               ++  A
Sbjct: 299 ALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGA 358

Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM---------------------- 282
             +F +M  R+  SWN M+ GY   G  + A   F +M                      
Sbjct: 359 REIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFN 418

Query: 283 ---------LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
                    L A   P+ ++  G+L  CS  G  E G +  H  V +      +     L
Sbjct: 419 ESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFG-KTLHGFVEKSGYSWIVSVNNAL 477

Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVL-WRTLLGSCKIHRNVEIGEIAMKNLVQL-EAAS 391
           +D+Y R G +  A  V         ++ W +++    +H +   GE A++   ++ E+  
Sbjct: 478 IDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGH---GEEAIRIFNEMTESGV 534

Query: 392 AGDYV-LLATIYACT 405
             D +  ++ +YAC+
Sbjct: 535 MPDEISFISLLYACS 549


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 188/503 (37%), Positives = 268/503 (53%), Gaps = 41/503 (8%)

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL----H 112
           N+LIRA A S  P  A+  Y H+L A    P   T    LK+     A+   + L    H
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAG-HHPTPHTLPSLLKSLALSPAVPGARGLALAVH 233

Query: 113 GFVIRSGYERCVVVSTNLMR--------------------------------GYAANGVI 140
              ++ G    ++VS  L+R                                 YA  G +
Sbjct: 234 AHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRV 293

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
             AR++FD MP R+ VSW+++++ Y QA    EAL L+ RM+ + V  D   LV +L++C
Sbjct: 294 TDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAAC 353

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
           A +G L  G ++H          +V++G ALVDMYAKCG +  A  VF  M++++VL+W 
Sbjct: 354 AQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWT 413

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           +MI G  +HGRG EA+  F QM   G  PD I F+G LC C+H GLV++G E F  MV +
Sbjct: 414 TMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRK 473

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEI 379
           Y +KP I+HYGC+VDL  R G L +A E++       D ++W  L+  C+ H+NVE+ E 
Sbjct: 474 YGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEY 533

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
            +K+ ++LE   +G YVLL  IYA +         R L++  G+  TPG S +EI   +H
Sbjct: 534 VVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIH 593

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKF-IGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           +F+V D SHP  + I  K +EI  R +   GY  D+  V +     E   E + + HSEK
Sbjct: 594 QFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEK--ENALSRHSEK 651

Query: 499 LAIAFGLATTPDGTSLRIVKNLR 521
           +AIAF L  T D   +RIVKNLR
Sbjct: 652 MAIAFALINTSDDMPIRIVKNLR 674



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 117/246 (47%), Gaps = 5/246 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+ +YA   +  ++ A+ LF+++      +W++++  + Q+    +A+  +  M  A   
Sbjct: 283 LITAYA--RAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARM-QADGV 339

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           RPD       L AC ++  L + + +HG++  +     V + T L+  YA  G ++ A  
Sbjct: 340 RPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAME 399

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF  M E+++++W ++I          EAL+L+ +M    V  D    +  L +C H G 
Sbjct: 400 VFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGL 459

Query: 206 LNMGIFL-HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
           ++ G  L   +  + G    +     +VD+ A+ G L+ A  +  +M  K D L W +++
Sbjct: 460 VDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALM 519

Query: 264 VGYGVH 269
            G   H
Sbjct: 520 AGCRFH 525


>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
 gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
          Length = 511

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 173/423 (40%), Positives = 254/423 (60%), Gaps = 20/423 (4%)

Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
           A+ VF+ M  RD+V+WN++I  Y + +   EAL+L+  M   +V  D +T   +++ CA 
Sbjct: 95  AKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGCAK 154

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           +GAL    ++H +  E     +  + +AL+DMY+KCG + +A  +F  +++ +V  WN+M
Sbjct: 155 LGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAM 214

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I G  VHG   +AI  F +M +    PD+ITFLG+L  CSH GLV+EG +YF +M SRY+
Sbjct: 215 ISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSRYS 274

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIA 380
           ++P I+HYG +VDL GRAG LE+A  +I  S P +P  V+WR LLG+C+ ++  E+GE A
Sbjct: 275 VQPHIEHYGAMVDLLGRAGLLEEAFAMIK-SMPMEPDVVIWRALLGACRTYKKPELGEAA 333

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
           M N+ +L    +GDYVLL+ IY   K  +      +++K  G+    G S  E    +H 
Sbjct: 334 MANISRLR---SGDYVLLSNIYCSQKRWDTAQGVWEMMKKKGVHKVRGKSCFEWAGFLHP 390

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
           F   D+SHP+ + IY+ LE ++ R K  GY     LV +  S  E   E +  +HSEKLA
Sbjct: 391 FKAGDRSHPETEAIYKMLEGLIQRTKLAGYVPTTDLVTMDVSEEEK--EGNLYHHSEKLA 448

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           +A+G+  T  G  +RI KNLR            S   SR +IVRDR+R+H F +GLCSCG
Sbjct: 449 LAYGILKTTSGAEVRISKNLRICYDCHSWIKIVSRLLSRVIIVRDRIRFHRFENGLCSCG 508

Query: 549 DYW 551
           DYW
Sbjct: 509 DYW 511



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 115/225 (51%), Gaps = 3/225 (1%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+++FN+++      WN++I  + +     +A+  +  M  +++  PD +TF   +  C 
Sbjct: 95  AKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVE-PDKYTFASVINGCA 153

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++ AL   Q +H  +I    E   ++S+ L+  Y+  G I+ A+ +FD +   ++  WN+
Sbjct: 154 KLGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNA 213

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG-IFLHRIACEM 219
           +IS        L+A+K++ +M  E+V  D  T + +L++C+H G +  G  +   +    
Sbjct: 214 MISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSRY 273

Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDVLSWNSMI 263
                +    A+VD+  + G L+ AF +   M  + DV+ W +++
Sbjct: 274 SVQPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALL 318



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 88/177 (49%), Gaps = 2/177 (1%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N ++D   +  N   A  VF++MR RDV++WN+MI GY    R +EA+  F+ M  +   
Sbjct: 80  NLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVE 139

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
           PD  TF  ++ GC+  G ++   ++ H ++    ++        L+D+Y + GK++ A E
Sbjct: 140 PDKYTFASVINGCAKLGALKHA-QWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKE 198

Query: 349 VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
           + +    ++  +W  ++    +H  + +  I +   +++E         L  + AC+
Sbjct: 199 IFDGVQRNNVCIWNAMISGLAVH-GLALDAIKVFTKMEVENVLPDAITFLGILTACS 254


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 179/506 (35%), Positives = 283/506 (55%), Gaps = 19/506 (3%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           W ++   ++++  P +A+  Y  M+     +   F F+  LKAC  +  L   + +H  V
Sbjct: 145 WVAMGIGYSRNGYPKEALLLYYEMV-CQFGQLGNFAFSMALKACSDLGDLRTGRAVHAQV 203

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
           +++  +   VV+  L+R Y+ +G  E A  +FD MP R+LVSWNS+I+   +     EA+
Sbjct: 204 LKATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAI 263

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
           + +  M+ + +G    TL  +L  CA V AL  G  +H +  +        V N+LVDMY
Sbjct: 264 EAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMY 323

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           AKCG +D    VF+ M+ +D+ SWN++I GY ++GR  EA+  F++M+ +GF PD ITF+
Sbjct: 324 AKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFI 383

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
            LL GCSH GL ++G   F MM   + + P ++HY CLVD+ GRAG++++ALE++  + P
Sbjct: 384 ALLSGCSHAGLADDGCRLFEMMKMDHGISPTVEHYACLVDVLGRAGRIKEALEIVK-NMP 442

Query: 356 SDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
             P   +W +LL SC++H NV + E   K L +LE  +AG+YV+L+ IYA     E V  
Sbjct: 443 FKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWESVKV 502

Query: 414 TRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL-EEIMHRAKFIGYTK 472
            R+ ++  G+    G SW++I +++H FV    +     + Y+K+ + +M   + +GY  
Sbjct: 503 VREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVP 562

Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
           D  +V      SE+        HSE+LA  F L  T  G  +RI KNLR           
Sbjct: 563 DTGVVL--HDVSEEMRAMWVCGHSERLATMFALINTASGMPIRITKNLRVCVDCHSWVKT 620

Query: 522 -SIAYSRDLIVRDRVRYHHFRDGLCS 546
            S    R +++RD  R+HHF+DG+CS
Sbjct: 621 LSKVTGRVIVLRDTNRFHHFKDGVCS 646



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 7/149 (4%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           ++ Y + +FN +Q     +WN+LI  +A +    +A+  +  M+ +  S PD  TF   L
Sbjct: 328 AMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFS-PDGITFIALL 386

Query: 97  KACERVK-ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
             C     A + C+      +  G    V     L+      G I+ A  +  NMP +  
Sbjct: 387 SGCSHAGLADDGCRLFEMMKMDHGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPT 446

Query: 156 VS-WNSII-SCYTQASFHLE---ALKLYE 179
            S W S++ SC    +  L    A +L+E
Sbjct: 447 GSIWGSLLNSCRLHGNVPLAEAVAKRLFE 475



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 84/219 (38%), Gaps = 12/219 (5%)

Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC--LLSSCAHVGALNMGIFLHRIA 216
           NS +   +++    EAL+L E    +          C   L SC    AL  G  L+   
Sbjct: 34  NSTLKSLSKSGKLDEALRLIESWPSKSPATAPDVEACALFLHSCISRKALEHGQRLYLQL 93

Query: 217 ------CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS---WNSMIVGYG 267
                 C    + +  +   L+ +++ CG +D A  VF    +   L    W +M +GY 
Sbjct: 94  LLYRDRCNHNLLNNPTLKGKLITLFSVCGRVDEARRVFEDGGEDVDLPESVWVAMGIGYS 153

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
            +G   EA+  + +M+       +  F   L  CS  G +  G    H  V +    P  
Sbjct: 154 RNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLRTG-RAVHAQVLKATEDPDQ 212

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
                L+ LY   G  E+AL + +     + V W +L+ 
Sbjct: 213 VVNNALLRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIA 251


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 186/488 (38%), Positives = 271/488 (55%), Gaps = 66/488 (13%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+ + +I++S +++YA  LF  I  P T  WN++IR  AQS SPL AI  Y+ M    + 
Sbjct: 16  LIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCV- 74

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE------------------------ 121
           RPD FTF F LKAC R+  +     +HG V R G+E                        
Sbjct: 75  RPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARA 134

Query: 122 -------RCVVVSTNLMRGYA-------------------------------ANGVIEAA 143
                  R VV  + L  GYA                                 G +E+A
Sbjct: 135 LFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESA 194

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           R +FD +P+RD+V+WN++I+ Y     + +AL+++E MR      D  T++ LLS+C  +
Sbjct: 195 RKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDL 254

Query: 204 GALNMGIFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           G L+ G  +H    EMGF + SV +GNAL+DMYAKCG++  A  VF  MR++DV +WNS+
Sbjct: 255 GDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSV 314

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           + G   HG  +++I  F +M      PD ITF+G+L  CSH G VEEG +YF +M   YN
Sbjct: 315 LGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYN 374

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           ++P I+HYGC+VDL GRAG L +A + I+T     + ++WRTLLG+C+IH NVE+G  A 
Sbjct: 375 IEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRAN 434

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ-VHK 440
             L+++    +GDYVLL+ IYA   + +GV + RKL+  +G++   G S IE  N+ +  
Sbjct: 435 MQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIEGDNKALMH 494

Query: 441 FVVDDKSH 448
           F+ D K +
Sbjct: 495 FLFDSKPN 502


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 186/486 (38%), Positives = 270/486 (55%), Gaps = 66/486 (13%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+ + +I++S +++YA  LF  I  P T  WN++IR  AQS SPL AI  Y+ M    + 
Sbjct: 51  LIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCV- 109

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE------------------------ 121
           RPD FTF F LKAC R+  +     +HG V R G+E                        
Sbjct: 110 RPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARA 169

Query: 122 -------RCVVVSTNLMRGYA-------------------------------ANGVIEAA 143
                  R VV  + L  GYA                                 G +E+A
Sbjct: 170 LFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESA 229

Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
           R +FD +P+RD+V+WN++I+ Y     + +AL+++E MR      D  T++ LLS+C  +
Sbjct: 230 RKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDL 289

Query: 204 GALNMGIFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
           G L+ G  +H    EMGF + SV +GNAL+DMYAKCG++  A  VF  MR++DV +WNS+
Sbjct: 290 GDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSV 349

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           + G   HG  +++I  F +M      PD ITF+G+L  CSH G VEEG +YF +M   YN
Sbjct: 350 LGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYN 409

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAM 381
           ++P I+HYGC+VDL GRAG L +A + I+T     + ++WRTLLG+C+IH NVE+G  A 
Sbjct: 410 IEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRAN 469

Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ-VHK 440
             L+++    +GDYVLL+ IYA   + +GV + RKL+  +G++   G S IE  N+ +  
Sbjct: 470 MQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIEGDNKALMH 529

Query: 441 FVVDDK 446
           F+ D K
Sbjct: 530 FLFDSK 535



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 67/343 (19%)

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLM--RGYAANGVIEAARSVFDNMPERD 154
           ++C  +  L   +++H  +I  G+         L+     A +G +  A  +F ++ E D
Sbjct: 21  RSCTTIGTL---KQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPD 77

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
              WN++I    Q+   L A+ LY +M    V  D FT   +L +C  +  + MG  +H 
Sbjct: 78  TFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHG 137

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
               +GF  + +V N L+  +A CG+L  A  +F    KRDV++W+++  GY   G    
Sbjct: 138 RVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGV 197

Query: 275 AISFFKQM----------LMAGFHP-----------------DSITFLGLLCGCSHQGLV 307
           A   F +M          ++ G+                   D +T+  ++ G    G  
Sbjct: 198 ARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSN 257

Query: 308 EEGVEYFHMMVS-------------------RYNLKPGIKHYGC---------------- 332
           ++ +E F  M S                     +L  G + + C                
Sbjct: 258 QQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNA 317

Query: 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
           L+D+Y + G + +ALEV       D   W ++LG    H + E
Sbjct: 318 LIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAE 360


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 193/537 (35%), Positives = 293/537 (54%), Gaps = 42/537 (7%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           W +    ++    LS A+LL  Q       +W SLI A++++    +A+  + +ML   +
Sbjct: 177 WTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGI 236

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY---ERCVVVSTNL----------- 130
           + PD  T    L AC ++K L     LH  V   G    E  VV   ++           
Sbjct: 237 A-PDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAR 295

Query: 131 ------------------MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
                             + GY  +G ++ ARS+FD M  RD++++NS+I+ Y  +    
Sbjct: 296 EVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLR 355

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC-EMGFVES-VYVGNA 230
           EAL L+  MR  D+ +D FT+V LLS+CA +GAL  G  LH  AC E+  VE+ +Y+G A
Sbjct: 356 EALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALH--ACIELRLVETDIYIGTA 413

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           L+DMY KCG ++ A  VF RM KRDV +W +MI G   +G G   + +F QM   GF P+
Sbjct: 414 LLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPN 473

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
            ++++ +L  CSH  L+ EG  YF  M   YN+ P I+HYGC++DL GR+G L++A++++
Sbjct: 474 PVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLV 533

Query: 351 NTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408
            T  P  P  V+W ++L +C++H+ +++ + A ++L+++E      YV L  I   ++  
Sbjct: 534 KT-MPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKW 592

Query: 409 EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFI 468
           E  ++ R L++   +K T G+S + +  QVHKFVV DKSHP    I   LEEI HR K  
Sbjct: 593 EDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSA 652

Query: 469 GYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIAY 525
           GY+   S V V     E   E++   HSEKLAIAFGL +      + I+KNLR   +
Sbjct: 653 GYSPITSQVTVDVDEEEK--EQTLLAHSEKLAIAFGLVSLAPNLPVHIIKNLRPTIF 707



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 182/401 (45%), Gaps = 14/401 (3%)

Query: 45   FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
             N I +    +WNS++  +A      +A++Y   ML      P   +F   L    +   
Sbjct: 954  LNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHG-KMPSIRSFVSLLALSGKTGD 1012

Query: 105  LNKCQELHGFVIRSGYE-RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
                 ++HG V + G+    V V T L+  Y      + + ++F+ +P   L   NS+I+
Sbjct: 1013 WQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLIT 1072

Query: 164  CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS--SCAHVGALNMGIFLHRIACEMGF 221
               + +    AL++   M  E V  D  T    +   S +   +L     LH    ++GF
Sbjct: 1073 SSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGF 1132

Query: 222  VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
               + V ++L+  YA  G L S+  +F  +   +V+ + ++I     +G G  A+  F Q
Sbjct: 1133 EMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQ 1192

Query: 282  MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
            M+ +G  PD++TFL  + GC   G+ EEG     +M +   L P  +H+ C+V+L  R G
Sbjct: 1193 MVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDG 1252

Query: 342  KLEKALEVINTSSPSDPV-----LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
             +++A+E++  S    P+      W +LL SCK H    +G+ A   L+ +        +
Sbjct: 1253 FVKEAMEMMEQS----PLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTL 1308

Query: 397  LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
             ++  +    D E   R +++     +K + G S IE+ ++
Sbjct: 1309 QVSNFFNDIGDRETALRIKEMTNVKEVKKS-GHSLIEVSHR 1348



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 156/354 (44%), Gaps = 49/354 (13%)

Query: 13  NKARQAHEIHGEWLLNSYAISVSSS----LSYAQLLFNQIQNPQ---TQAWNSLIRAFAQ 65
              R  H      LLNS    +  S    L YA  LF+++         A  +  RA   
Sbjct: 24  TSGRLLHPPSAHHLLNSLVNCLPPSDPLHLRYALHLFDRMPASTFLFDTALRACFRAGTS 83

Query: 66  SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK--ACERVKALNKCQELHGFVIRSGYERC 123
           S  P      +  M  A++ RPD FTF F  K  +  R +AL  C  LH   +R+     
Sbjct: 84  SGDPDIPFVLFRRMRRAAV-RPDGFTFHFLFKCSSSSRPRAL-LCTMLHAACLRTMLPSA 141

Query: 124 V-VVSTNLMRGYAANGVIEAARSVFDNMPER----------------------------- 153
              V+ +L+  Y   G+    R  FD +P +                             
Sbjct: 142 APFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAP 201

Query: 154 --DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
             D++SW S+I+ Y++A    EA+  ++ M  E +  D  T++ +LS+C+ +  L +G  
Sbjct: 202 VRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCS 261

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDVLSWNSMIVGYGVHG 270
           LH +  E G   S  +  AL+DMYAKCG+   A  VF  + R R   SWN++I GY  HG
Sbjct: 262 LHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHG 321

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
             D A S F QM +     D ITF  ++ G  H G + E +  F M + R++L+
Sbjct: 322 HVDVARSLFDQMEVR----DIITFNSMITGYIHSGQLREALLLF-MNMRRHDLR 370



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 124/275 (45%), Gaps = 8/275 (2%)

Query: 80   LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
            ++AS  R    TF+  L  C   +AL    +LHG V+  G      V + L+  Y     
Sbjct: 788  MVASGIRETPHTFSTILGVCSTYEAL----QLHGRVLALGLCCNPFVGSALVNHYMHVES 843

Query: 140  IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
              A+ S+F  +P ++    N ++          E +  +  MR + + L+G +    +  
Sbjct: 844  PHASLSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKG 903

Query: 200  CAHVGA-LNMGIFLHRIACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
            C   G  L  G  LH +  + G++ S +++ N+LVD+Y+  G+        + +   DV+
Sbjct: 904  CYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVI 963

Query: 258  SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
            SWNS++  Y   G   EA+ + KQML  G  P   +F+ LL      G  + GV+  H +
Sbjct: 964  SWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQ-IHGI 1022

Query: 318  VSRYNLKPGIKHY-GCLVDLYGRAGKLEKALEVIN 351
            V +        H    L+D+YG+    + +L + N
Sbjct: 1023 VHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFN 1057



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 86/218 (39%), Gaps = 5/218 (2%)

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            M  RD+ S N +I+ + +      A  +Y  M    +     T   +L  C+   AL  
Sbjct: 756 TMAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQ- 814

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
              LH     +G   + +VG+ALV+ Y    +  ++  +F  +  ++    N ++ G G 
Sbjct: 815 ---LHGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGN 871

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GI 327
               +E I  F  M       + +++   + GC   G   E     H +V +    P  I
Sbjct: 872 LKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNI 931

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                LVDLY   G     ++ +N     D + W ++L
Sbjct: 932 FLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSIL 969


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 199/518 (38%), Positives = 274/518 (52%), Gaps = 28/518 (5%)

Query: 55   AWNSLIRAFAQSLSPL-QAIFYYNHMLMAS--LSRPDTFTFTFTLKACERVKALNKCQEL 111
            +WNS+I A + S + + QA+ Y+  M+     LSR    TF   L A   +       ++
Sbjct: 1029 SWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSR---VTFINILSAVSSLSLHEVSHQI 1085

Query: 112  HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVSWNSIISCYTQASF 170
            H  V++        +   L+  Y   G +     +F  M E RD VSWNS+IS Y     
Sbjct: 1086 HALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNEL 1145

Query: 171  HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
              +A+ L   M  +   LD FT   +LS+CA V  L  G+ +H           V VG+A
Sbjct: 1146 LHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSA 1205

Query: 231  LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
            LVDMY+KCG +D A   F  M  R+V SWNSMI GY  HG G++A+  F +M++ G  PD
Sbjct: 1206 LVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPD 1265

Query: 291  SIT-FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
             +   LG+L  CSH G VEEG E+F  M   Y L P ++H+ C+VDL GRAGKL++  + 
Sbjct: 1266 HVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDF 1325

Query: 350  INTSSPSDP--VLWRTLLGSC--KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
            IN S P  P  ++WRT+LG+C     RN E+G  A + L++LE  +A +YVLLA +YA  
Sbjct: 1326 IN-SMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASG 1384

Query: 406  KDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRA 465
            +  E VA+ R  +K   +K   G SW+ + + VH FV  DK HP+ D IY KL E+  + 
Sbjct: 1385 EKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKM 1444

Query: 466  KFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---- 521
            +  GY                    S  YHSEK+A+AF L T      +RI+KNLR    
Sbjct: 1445 RDAGYIPQTKYALFDLELENKEELLS--YHSEKIAVAFVL-TRQSALPIRIMKNLRVCGD 1501

Query: 522  --------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                    S    R +++RD  R+HHF DG CSCGDYW
Sbjct: 1502 CHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 1539



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 214/462 (46%), Gaps = 60/462 (12%)

Query: 8   RYVGLNKARQAHEIH---------GEWLLNSYAISVS---SSLSYAQLLFNQIQNPQTQA 55
           RY G   + +A E+H         G   L++  I++      L  AQ LF+++ N     
Sbjct: 553 RYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVT 612

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ---ELH 112
           W  LI  + Q+  P +A   +  M+ A    P+ + F   L+AC+     + C+   ++H
Sbjct: 613 WACLISGYTQNGKPDEACARFRDMVRAGFI-PNHYAFGSALRACQE-SGPSGCKLGVQIH 670

Query: 113 GFVIRSGYERCVVVSTNLMRGYAAN-GVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           G + ++ Y   VVV   L+  Y +       ARSVFD +  R+ +SWNSIIS Y++    
Sbjct: 671 GLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDX 730

Query: 172 LEALKLYERMRFEDVGL----DGFTLVCLLSS-CAHV--GALNMGIFLHRIACEMGFVES 224
           + A  L+  M+ E +G     + +T   L+++ C+ V  G   +   L R+  + GF++ 
Sbjct: 731 VSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVE-KSGFLQD 789

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML- 283
           +YVG+ALV  +A+ G  D A  +F +M  R+V+S N ++VG     +G+ A   F +M  
Sbjct: 790 LYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKD 849

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEY---FHMMVSRYNLKPGIKHYG-CLVDLYGR 339
           + G + DS  ++ LL   S   ++EEG       H  V R  L       G  LV++Y +
Sbjct: 850 LVGINSDS--YVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAK 907

Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE--AASAGDYVL 397
           +G +  A  V       D V W +L+    + +N E  E A ++ +++    +   ++ L
Sbjct: 908 SGAIADACSVFELMVEKDSVSWNSLISG--LDQN-ECSEDAAESFLRMRRTGSMPSNFTL 964

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
           ++T+ +C                          WI +G Q+H
Sbjct: 965 ISTLSSCA----------------------SLGWIMLGEQIH 984



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 184/405 (45%), Gaps = 15/405 (3%)

Query: 6    HARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
            H    GLN  + A    G  L+N YA   S +++ A  +F  +    + +WNSLI    Q
Sbjct: 884  HVIRTGLNDNKVAI---GNGLVNMYA--KSGAIADACSVFELMVEKDSVSWNSLISGLDQ 938

Query: 66   SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV 125
            +     A   +  M     S P  FT   TL +C  +  +   +++H   ++ G +  V 
Sbjct: 939  NECSEDAAESFLRMRRTG-SMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVS 997

Query: 126  VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL-EALKLYERMRFE 184
            VS  L+  YA  G       VF  MPE D VSWNS+I   + +   + +A+K +  M   
Sbjct: 998  VSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRG 1057

Query: 185  DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
              GL   T + +LS+ + +    +   +H +  +    +   +GNAL+  Y KCG ++  
Sbjct: 1058 GWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNEC 1117

Query: 245  FCVFSRMRK-RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
              +F+RM + RD +SWNSMI GY  +    +A+     M+  G   DS TF  +L  C+ 
Sbjct: 1118 EKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACAS 1177

Query: 304  QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
               +E G+E  H    R  ++  +     LVD+Y + G+++ A          +   W +
Sbjct: 1178 VATLERGME-VHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNS 1236

Query: 364  LLGSCKIHRNVEIGEIAMKNLVQLE-AASAGDYV--LLATIYACT 405
            ++     H +   GE A+K   ++       D+V  LL  + AC+
Sbjct: 1237 MISGYARHGH---GEKALKLFTRMMLDGQPPDHVAPLLGVLSACS 1278



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 131/262 (50%), Gaps = 4/262 (1%)

Query: 107  KCQELHGFVIRSGY-ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCY 165
            K +E+H  VIR+G  +  V +   L+  YA +G I  A SVF+ M E+D VSWNS+IS  
Sbjct: 877  KGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGL 936

Query: 166  TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV 225
             Q     +A + + RMR        FTL+  LSSCA +G + +G  +H    ++G    V
Sbjct: 937  DQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDV 996

Query: 226  YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG-VHGRGDEAISFFKQMLM 284
             V NAL+ +YA+ G       VFS M + D +SWNS+I           +A+ +F +M+ 
Sbjct: 997  SVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMR 1056

Query: 285  AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
             G+    +TF+ +L   S   L  E     H +V +Y L         L+  YG+ G++ 
Sbjct: 1057 GGWGLSRVTFINILSAVSSLSL-HEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMN 1115

Query: 345  KALEVI-NTSSPSDPVLWRTLL 365
            +  ++    S   D V W +++
Sbjct: 1116 ECEKIFARMSETRDEVSWNSMI 1137


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 192/526 (36%), Positives = 312/526 (59%), Gaps = 18/526 (3%)

Query: 2   GLKKHARY--VGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSL 59
           G+  HA+   VGL    +A  I    L+N Y  S    +  A+ LF+++      +WN++
Sbjct: 66  GMACHAQIIRVGL----RADTITSNMLMNMY--SKCGLVESARKLFDEMPVRSLVSWNTM 119

Query: 60  IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
           + +  Q+    +A+  +  M    +S  + FT +  + AC     + +C++LHGF +++ 
Sbjct: 120 VGSHTQNGDSEKALVLFMQMQKEGISCSE-FTVSSVVCACAAKCCVFECKQLHGFALKTA 178

Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
            +  V V T L+  YA  G+++ A  VF+ MPER  V+W+S+++ Y Q   + EAL L+ 
Sbjct: 179 LDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFH 238

Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
           R +   +  + FT+   LS+CA   AL  G  +  + C+ G   +++V ++L+DMYAKCG
Sbjct: 239 RAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMYAKCG 298

Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
            ++ A+ VFS + +++V+ WN+M+ G+  H R  EA+ +F++M   G  P+ IT++ +L 
Sbjct: 299 IIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGICPNEITYISVLT 358

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
            CSH GLVE+G +YF +M+  +N+ P + HY C+VD+ GRAG L +A ++I+   P D  
Sbjct: 359 ACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDLID-RMPFDAT 417

Query: 360 --LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417
             +W +LL SC+I+RN+E  E+A K+L ++E  +AG++VLL+ IYA     E VAR R L
Sbjct: 418 ASMWGSLLASCRIYRNLEXAEVAAKHLFEIEPHNAGNHVLLSNIYAANNRWEEVARARNL 477

Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGY--TKDES 475
           +K +  K   G SWIEI ++VH F+V +++HP    IY KLE+++   K IGY    +  
Sbjct: 478 LKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHD 537

Query: 476 LVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
           L  V  S  ++ L     +HSEKLA+ FG+   P G  +RI+KNLR
Sbjct: 538 LHDVEESRKQELLR----HHSEKLALTFGIMVLPHGAPIRIMKNLR 579



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 139/270 (51%), Gaps = 1/270 (0%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L++  R +A  +    H  +IR G     + S  LM  Y+  G++E+AR +FD MP R L
Sbjct: 54  LQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSL 113

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
           VSWN+++  +TQ     +AL L+ +M+ E +    FT+  ++ +CA    +     LH  
Sbjct: 114 VSWNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQLHGF 173

Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
           A +     +V+VG AL+D+YAKCG +  A  VF  M +R  ++W+SM+ GY  +   +EA
Sbjct: 174 ALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEA 233

Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
           +  F +    G   +  T    L  C+ +  + EG +    ++ +  +   I     L+D
Sbjct: 234 LVLFHRAQAMGLEHNQFTISSALSACAARAALIEG-KQVQAVLCKTGIGSNIFVISSLID 292

Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +Y + G +E+A  V ++    + VLW  +L
Sbjct: 293 MYAKCGIIEEAYIVFSSVEEKNVVLWNAML 322



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 1/171 (0%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           LL S A   A   G+  H     +G        N L++MY+KCG ++SA  +F  M  R 
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 112

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           ++SWN+M+  +  +G  ++A+  F QM   G      T   ++C C+ +  V E  +  H
Sbjct: 113 LVSWNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFE-CKQLH 171

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
               +  L   +     L+D+Y + G ++ A  V         V W +++ 
Sbjct: 172 GFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVA 222


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 188/526 (35%), Positives = 293/526 (55%), Gaps = 20/526 (3%)

Query: 42  QLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101
           +LL      P +  + SL RA A+   P  A+ +Y  +L A+L    +F FT   KAC  
Sbjct: 59  RLLAASHPAPDSFLFCSLTRATARRGLPAAALAFYRCLLAAALPF-SSFAFTSVAKACAD 117

Query: 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161
           + A+     +H   +  G      V T+L+  Y+  G ++ AR +FD + ++ +V+WN++
Sbjct: 118 LSAIRAGMGIHAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAM 177

Query: 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
           IS Y Q      A+++Y  M+      D  T V  LS+CA  GAL++G  + ++      
Sbjct: 178 ISGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVSERM 237

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
             +V +G ALV+MYA+CG ++ A   F+ +++R+V++W SMI GYG+HG G EA+  F  
Sbjct: 238 EMNVVLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNL 297

Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
           M   G  P+ +TF+ +L  C+H GLV EG + F  M S Y L P ++HY  +VD+YGRAG
Sbjct: 298 MRQQGPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAG 357

Query: 342 KLEKALEVINTSSPSD--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
            L+ A+  I+ S P +  P +W  +LG+CK+H++  +G    + L+ LE  S    VLL+
Sbjct: 358 LLDDAMRFIHDSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAERLIALEPESPSHRVLLS 417

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            +YA +     V + R  +    +K   G+S IEI    H F + +KSHP    IY+ LE
Sbjct: 418 NLYALSGKMNHVEKVRDTMIKRRLKKPIGYSLIEIAGVAHLFRMGEKSHPKTSEIYQYLE 477

Query: 460 EIMHRAKFIGYT-KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS-LRIV 517
           +++ +   +GY  K +S++        +F  +   YH EKLA+AFGL  T   T+ +RI+
Sbjct: 478 KLIEKITDVGYVPKTDSVLHELEEEEREFALR---YHGEKLAVAFGLMMTSGCTTPIRII 534

Query: 518 KNLR-------SIAY-----SRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR       +I Y     +R++IVRD  R+HHF+ G CSC +YW
Sbjct: 535 KNLRICEDCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 580


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 188/517 (36%), Positives = 293/517 (56%), Gaps = 22/517 (4%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WNS+I A+ Q     +A+  Y  M+     + D FT    L A   +  L   ++ HG 
Sbjct: 207 SWNSMIVAYGQHKEGAKALALYKEMIFKGF-KIDMFTLASVLNALTSLDHLIGGRQFHGK 265

Query: 115 VIRSGYERCVVVSTNLMRGYAANGV---IEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           +I++G+ +   V + L+  Y+  G    +  +  VF  +   DLV WN++IS Y+    H
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEH 325

Query: 172 LE-ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGN 229
            E A+K + +M+      D  + VC+ S+C+++ + + G  +H +A +     + + V N
Sbjct: 326 SEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNN 385

Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
           AL+ +Y K GNL  A  VF RM + + +S+N MI GY  HG G EA+  +++ML +G  P
Sbjct: 386 ALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAP 445

Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
           ++ITF+ +L  C+H G V+EG +YF+ M   + ++P  +HY C++DL GRAGKLE+A   
Sbjct: 446 NNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERF 505

Query: 350 INTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407
           I+ + P  P  V W  LLG+C+ H+N+ + E A K L+ ++  +A  YV+LA +YA    
Sbjct: 506 ID-AMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGK 564

Query: 408 EEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF 467
            E +A  RK ++   I+  PG SWIE+  + H FV +D SHP    +   LEE+M + K 
Sbjct: 565 WEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKK 624

Query: 468 IGYTKDESLVAVSGSSSEDFLEKSS-AYHSEKLAIAFGLATTPDGTSLRIVKNLR----- 521
           +GY  D+    V    + +  E+    +HSEKLA+AFGL +T DG  + +VKNLR     
Sbjct: 625 VGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDGEEIVVVKNLRICGDC 684

Query: 522 -------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
                  S    R++IVRD +R+H F+DG CSCGDYW
Sbjct: 685 HNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 174/352 (49%), Gaps = 17/352 (4%)

Query: 12  LNKARQAHEIHGEWLLNSYAISVS-----SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQS 66
           L+ AR A +   E  + SY + V      S +  A+ LF++   P T ++N+LI  +A +
Sbjct: 59  LSYARAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADA 118

Query: 67  LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC-ERVKALNKCQELHGFVIRSGYERCVV 125
              + A+  +  M        D FT +  + AC +RV  +   ++LH F +  G++    
Sbjct: 119 RETVAAMVLFKRMRELGF-EVDGFTLSGLIAACCDRVDLI---KQLHCFAVSGGFDSYSS 174

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPE-RDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
           V+   +  Y+  G++  A SVF  M   RD VSWNS+I  Y Q     +AL LY+ M F+
Sbjct: 175 VNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFK 234

Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD-- 242
              +D FTL  +L++   +  L  G   H    + GF ++ +VG+ L+D Y+KCG  D  
Sbjct: 235 GFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGM 294

Query: 243 -SAFCVFSRMRKRDVLSWNSMIVGYGVHGR-GDEAISFFKQMLMAGFHPDSITFLGLLCG 300
             +  VF  +   D++ WN+MI GY ++    +EA+  F+QM   G  PD  +F+ +   
Sbjct: 295 SDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSA 354

Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEKALEVIN 351
           CS+     +G +  H +  + N+    I     L+ LY ++G L  A  V +
Sbjct: 355 CSNLSSPSQGKQ-IHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFD 405



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 142/319 (44%), Gaps = 48/319 (15%)

Query: 109 QELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM------------------ 150
           + LH   ++S       +S + +  Y+  G +  AR+ FD+                   
Sbjct: 28  KSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAKD 87

Query: 151 -------------PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
                        P+ D VS+N++IS Y  A   + A+ L++RMR     +DGFTL  L+
Sbjct: 88  SKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLI 147

Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-RDV 256
           ++C     +++   LH  A   GF     V NA V  Y+K G L  A  VF  M   RD 
Sbjct: 148 AACCD--RVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDE 205

Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
           +SWNSMIV YG H  G +A++ +K+M+  GF  D  T   +L   +    +  G ++   
Sbjct: 206 VSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK 265

Query: 317 MVSRYNLKPGI---KHYGC-LVDLYGRAG---KLEKALEVINTSSPSDPVLWRTLLGSCK 369
           ++     K G     H G  L+D Y + G    +  + +V       D VLW T++    
Sbjct: 266 LI-----KAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYS 320

Query: 370 IHRNVEIGEIAMKNLVQLE 388
           +  N E  E A+K+  Q++
Sbjct: 321 M--NEEHSEEAVKSFRQMQ 337



 Score = 45.1 bits (105), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  LH +  +     S Y+ N  V++Y+KCG L  A   F    + +V S+N ++  
Sbjct: 24  LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKA 83

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
           Y      D  I   +Q+      PD++++  L+ G
Sbjct: 84  YA----KDSKIHIARQLFDENPQPDTVSYNTLISG 114


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 183/526 (34%), Positives = 296/526 (56%), Gaps = 26/526 (4%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           LF ++      +W S+I     +    +A+F +  ML + +  P   TF   L AC    
Sbjct: 158 LFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGV-EPTWSTFACVLSACANAV 216

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
             N   ++HG V++ G      +S +L+  YA    IE A  +F+    +++V W ++++
Sbjct: 217 EFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLT 276

Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
            Y   + H +AL+++  M       +  T    L +C  + AL+ G  +H +A ++G   
Sbjct: 277 AYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLET 336

Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
            V+VGN+LV MY +CGN++SA  VF  + ++D++SWNS+IVG   HG G  A+ FF QM+
Sbjct: 337 DVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMI 396

Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN---LKPGIKHYGCLVDLYGRA 340
             G  P+ ITF GLL  CS  G++ +G  +F   +SRY    L+P  +HY C+VD+ GR 
Sbjct: 397 RRGVDPNEITFTGLLSACSRSGMLLKGRCFFE-YISRYKSNVLRP--QHYACMVDILGRC 453

Query: 341 GKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           GKL++A E++      ++ ++W  LL +C++H N+E+ E A K+++ LE   +  YVLL+
Sbjct: 454 GKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLS 513

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            IYA       V+R R  +K  G+   PG SW+ +  + H+F+  D+SHP ++ IY KL+
Sbjct: 514 NIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEKLD 573

Query: 460 EIMHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
            +  + K  GY  D+  +L  V     E+ L    ++HSE+LAIAFGL +T +G+++ ++
Sbjct: 574 WLGKKLKEFGYVPDQKFALHDVEDEQKEEML----SFHSERLAIAFGLVSTVEGSTITVM 629

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S    R ++VRD  R+HHF++G+CSC DYW
Sbjct: 630 KNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCSDYW 675



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 154/359 (42%), Gaps = 41/359 (11%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L  A+L+F++I +P    +  +I  + ++     A+  ++ M     S  D  ++   +K
Sbjct: 28  LDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRM-----SVRDVVSWNSMIK 82

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
            C     L     L         E+ V+  T ++ GY   G +E A+ +F +M  +D+ +
Sbjct: 83  GCLDCGNLGMATRL----FDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAA 138

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDV--------GLD-------------------- 189
           WN+++  Y +     E ++L+E M   DV        GLD                    
Sbjct: 139 WNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGV 198

Query: 190 ---GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
                T  C+LS+CA+    N+G+ +H    ++G     ++  +L+  YA C  ++ A  
Sbjct: 199 EPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHK 258

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           +F+    ++V+ W +++  Y  + +  +A+  F  M   G  P+  TF   L  C     
Sbjct: 259 IFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEA 318

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
           +++G E  H M  +  L+  +     LV +Y   G +  A+ V    +  D V W +++
Sbjct: 319 LDKGKE-IHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSII 376



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 122/285 (42%), Gaps = 55/285 (19%)

Query: 120 YERCVVVS-TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
           Y R + +S T  +  +  N  ++ AR +FD +P  +L  +  +I+ YT+     +ALKL+
Sbjct: 7   YTRTITLSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLF 66

Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL-------------------------- 212
           +RM   DV     +   ++  C   G L M   L                          
Sbjct: 67  DRMSVRDV----VSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVE 122

Query: 213 --HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
              R+  +M  V+ V   NA+V  Y + G ++    +F  M  RDV+SW SMI G  ++G
Sbjct: 123 LAQRLFLDM-HVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNG 181

Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE----------YFHMMVSR 320
           + +EA+  FK+ML +G  P   TF  +L  C++      GV+          +FH  +S 
Sbjct: 182 KSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISV 241

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                       L+  Y    K+E A ++ N +   + V W  LL
Sbjct: 242 -----------SLITFYANCMKIEHAHKIFNETLTKNVVKWTALL 275



 Score = 39.3 bits (90), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           +++ A  +F  I      +WNS+I   AQ    L A+ ++N M+   +  P+  TFT  L
Sbjct: 353 NVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVD-PNEITFTGLL 411

Query: 97  KACERVKALNKCQELHGFVIR 117
            AC R   L K +    ++ R
Sbjct: 412 SACSRSGMLLKGRCFFEYISR 432


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 181/529 (34%), Positives = 289/529 (54%), Gaps = 27/529 (5%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
           L+ A+ LF+++      +W ++I  + Q+     A       L   +   +  ++T  L 
Sbjct: 187 LAEARELFDEMPRRNVISWTTMISGYVQNGQVDVA-----RKLFEVMPEKNEVSWTAMLM 241

Query: 98  ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
              +   + +  EL   +      + VV    ++ G+  NG +  AR VFD + E+D  +
Sbjct: 242 GYTQGGRIEEASELFDAM----PVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGT 297

Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
           W+++I  Y +  F +EAL L+  M+ E V  +  +L+ +LS CA + +L+ G  +H    
Sbjct: 298 WSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELV 357

Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
           +  F   V+V + L+ MY KCG+L  A  +F R   +D++ WNS+I GY  HG  +EA+ 
Sbjct: 358 KSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQ 417

Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
            F +M  +G   D +TF+G+L  CS+ G V+EG+E F  M S+Y ++P  +HY C+VDL 
Sbjct: 418 VFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLL 477

Query: 338 GRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           GRAG +  A+++I      +D ++W  LLG+C+ H N+ + E+A K L+QLE  +AG Y+
Sbjct: 478 GRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYI 537

Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV--VDDKSHPDADMI 454
           LL+ IYA       VA  R+ ++   +  +PG SWIE+  +VH F   V  K HP+   I
Sbjct: 538 LLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTK-HPELSSI 596

Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
            + LE++    +  GY  D S V       E    +S  +HSE+LA+AFGL   P+G  +
Sbjct: 597 MKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKV--RSLGHHSERLAVAFGLLKVPEGMPI 654

Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++KNLR            +    R++I+RD  R+HHF+DG CSC DYW
Sbjct: 655 RVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 171/373 (45%), Gaps = 25/373 (6%)

Query: 5   KHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFA 64
           + ARY+  +K  + + +    L++ Y    +  +S A+  F+ +      +W +++R + 
Sbjct: 64  REARYL-FDKMPERNTVSWNGLISGYV--KNRMVSEARKAFDTMPERNVVSWTAMVRGYV 120

Query: 65  QS--LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER 122
           Q   +S  + +F+        +   +  ++T  L    +V+ +++ + L   +      +
Sbjct: 121 QEGLVSEAETLFW-------QMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIM----PVK 169

Query: 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182
            VV  TN++ GY   G +  AR +FD MP R+++SW ++IS Y Q      A KL+E M 
Sbjct: 170 DVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP 229

Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
            +    +  +   +L      G +     L     +   V++V   NA++  + + G + 
Sbjct: 230 EK----NEVSWTAMLMGYTQGGRIEEASELF----DAMPVKAVVACNAMILGFGQNGEVA 281

Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
            A  VF ++R++D  +W++MI  Y   G   EA++ F  M   G   +  + + +L  C+
Sbjct: 282 KARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCA 341

Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWR 362
               ++ G +  H  + +      +     L+ +Y + G L KA ++ +  SP D V+W 
Sbjct: 342 SLASLDHGRQ-VHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWN 400

Query: 363 TLLGSCKIHRNVE 375
           +++     H  VE
Sbjct: 401 SIITGYAQHGLVE 413



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 153/369 (41%), Gaps = 58/369 (15%)

Query: 37  SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
            +  A+ +F+++ +    +WNS++  + Q+  P +A + ++ M                 
Sbjct: 31  QIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM----------------- 73

Query: 97  KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
                                   ER  V    L+ GY  N ++  AR  FD MPER++V
Sbjct: 74  -----------------------PERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVV 110

Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
           SW +++  Y Q     EA  L+ +M  ++V     +   +L     V  ++    L  I 
Sbjct: 111 SWTAMVRGYVQEGLVSEAETLFWQMPEKNV----VSWTVMLGGLIQVRRIDEARGLFDIM 166

Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
                V+ V     ++  Y + G L  A  +F  M +R+V+SW +MI GY  +G+ D A 
Sbjct: 167 P----VKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVAR 222

Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
             F+ M       + +++  +L G +  G +EE  E F  M  +      +     ++  
Sbjct: 223 KLFEVMP----EKNEVSWTAMLMGYTQGGRIEEASELFDAMPVK-----AVVACNAMILG 273

Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
           +G+ G++ KA +V +     D   W  ++   +  +  E+  + +  L+Q E   +    
Sbjct: 274 FGQNGEVAKARQVFDQIREKDDGTWSAMIKVYE-RKGFEVEALNLFALMQREGVQSNFPS 332

Query: 397 LLATIYACT 405
           L++ +  C 
Sbjct: 333 LISVLSVCA 341



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 117/231 (50%), Gaps = 3/231 (1%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           +  ++ A+ +F+QI+      W+++I+ + +    ++A+  +  M    + + +  +   
Sbjct: 277 NGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGV-QSNFPSLIS 335

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L  C  + +L+  +++H  +++S ++  V V++ L+  Y   G +  AR +FD    +D
Sbjct: 336 VLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKD 395

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +V WNSII+ Y Q     EAL+++  M    +  DG T V +LS+C++ G +  G+ +  
Sbjct: 396 IVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFE 455

Query: 215 IACEMGFVESVYVGNA-LVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
                  VE      A +VD+  + G ++ A  +  +M  + D + W +++
Sbjct: 456 SMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALL 506



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 19/233 (8%)

Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFT 192
           YA  G IE+AR VFD MP++ +VSWNS+++ Y Q +   EA  L+++M   + V  +G  
Sbjct: 26  YARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNG-- 83

Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
              L+S        N  +   R A +     +V    A+V  Y + G +  A  +F +M 
Sbjct: 84  ---LISGYVK----NRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMP 136

Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
           +++V+SW  M+ G     R DEA   F  M +     D +    ++ G   +G + E  E
Sbjct: 137 EKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVK----DVVARTNMISGYCQEGRLAEARE 192

Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            F  M  R      +  +  ++  Y + G+++ A ++       + V W  +L
Sbjct: 193 LFDEMPRR-----NVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAML 240



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 100/249 (40%), Gaps = 37/249 (14%)

Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288
           N+ +  YA+ G ++SA  VF  M  + ++SWNSM+ GY  + R  EA   F +M      
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMP----E 75

Query: 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348
            +++++ GL+ G     +V E  + F  M  R      +  +  +V  Y + G + +A  
Sbjct: 76  RNTVSWNGLISGYVKNRMVSEARKAFDTMPER-----NVVSWTAMVRGYVQEGLVSEAET 130

Query: 349 VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK-- 406
           +       + V W  +LG     R ++            EA    D + +  + A T   
Sbjct: 131 LFWQMPEKNVVSWTVMLGGLIQVRRID------------EARGLFDIMPVKDVVARTNMI 178

Query: 407 ----DEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
                E  +A  R+L      +    W+ + I   V    VD         + RKL E+M
Sbjct: 179 SGYCQEGRLAEARELFDEMPRRNVISWTTM-ISGYVQNGQVD---------VARKLFEVM 228

Query: 463 HRAKFIGYT 471
                + +T
Sbjct: 229 PEKNEVSWT 237


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 306/560 (54%), Gaps = 55/560 (9%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +      +W S+   +       Q I  +  M +  + R ++ T +  L AC 
Sbjct: 131 ARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGI-RANSLTVSSILPACA 189

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               L +  E+HGF++R+  E  V VS+ L+  YA++  ++ AR VFD+M  RD+VSWN 
Sbjct: 190 DYIKLGR--EVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNV 247

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDG------------------------------ 190
           +++ Y     +   L L+ +MR E + L+                               
Sbjct: 248 MLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSG 307

Query: 191 -----FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
                 T+V  L  C ++ +L  G  +H       F+E V +  ALV +YAKCG+L+ + 
Sbjct: 308 IKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSR 367

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF+ M ++DV++WN+MI+   +HG+G E++  F +ML +G  P+S+TF+G+L GCSH  
Sbjct: 368 HVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQ 427

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRT 363
           L +EG+  F+ M S +++ P   HY C+VD+  RAG+LE+A + I    P +P    W  
Sbjct: 428 LADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIR-KMPIEPTAAAWGA 486

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LLG+C++++NVE+G +A   L ++E  +AG+YVLL+ I    K     +  RK+++  G+
Sbjct: 487 LLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGL 546

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
             TPG SW+++ N+V+ FV  DKS+   DMIYR L+EI  + +  GY  +   V    + 
Sbjct: 547 AKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVL--QNV 604

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIV 531
            ++  E++   HSE+LA+AFG+  +   T++R+ KNLR            +      +IV
Sbjct: 605 DQEQREETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIV 664

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RD +R+HHFRDG C+C D+W
Sbjct: 665 RDSLRFHHFRDGYCTCNDFW 684



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 159/372 (42%), Gaps = 39/372 (10%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S  L  A  LF++I  P  + W  LI    Q   P +AI  Y+ +L  ++ RPD F    
Sbjct: 24  SGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNV-RPDKFVLLS 82

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
             KAC     L   +++H   I+ G+ + +V+   L+  +     +  AR VFD+M  +D
Sbjct: 83  VAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKD 142

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           +VSW S+  CY       + + L+  M    +  +  T+  +L +CA    + +G  +H 
Sbjct: 143 VVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADY--IKLGREVHG 200

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
                    +VYV +ALV+MYA    L  A  VF  M  RD++SWN M+  Y ++   + 
Sbjct: 201 FILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYER 260

Query: 275 AISFFKQMLM-----------------------------------AGFHPDSITFLGLLC 299
            +  F QM                                     +G  P+ IT +  L 
Sbjct: 261 GLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALP 320

Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
           GC++   +  G E  H  V R+     +     LV LY + G LE +  V NT    D V
Sbjct: 321 GCTNLESLRGGKE-IHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVV 379

Query: 360 LWRTLLGSCKIH 371
            W T++ +  +H
Sbjct: 380 AWNTMIMANSMH 391



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 158/332 (47%), Gaps = 23/332 (6%)

Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
           S  L++    +G ++ A  +FD +PE DL +W  +IS +TQ  F  +A+ +Y  +   +V
Sbjct: 14  SIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNV 73

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
             D F L+ +  +CA  G L +   +H  A + GF + + +GNAL+DM+ KC  ++ A C
Sbjct: 74  RPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARC 133

Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
           VF  M  +DV+SW SM   Y   G   + I  F++M + G   +S+T   +L  C+    
Sbjct: 134 VFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACAD--Y 191

Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
           ++ G E  H  + R  ++  +     LV++Y  +  L++A  V ++    D V W  +L 
Sbjct: 192 IKLGRE-VHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLT 250

Query: 367 SCKIHRNVEIG----EIAMKNLVQLEAASAGDYVL---------LATIYACTKDEEGVAR 413
           +  +++  E G        K  ++L  AS    +          LA    C   + G+  
Sbjct: 251 AYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKP 310

Query: 414 TRKLIKSNGIKTTPGWSWIEI---GNQVHKFV 442
            R  I    +   PG + +E    G ++H +V
Sbjct: 311 NRITI----VSALPGCTNLESLRGGKEIHGYV 338


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 188/503 (37%), Positives = 268/503 (53%), Gaps = 41/503 (8%)

Query: 57  NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL----H 112
           N+LIRA A S  P  A+  Y H+L A    P   T    LK+     A+   + L    H
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAG-HHPTPHTLPSLLKSLALSPAVPGARGLALAVH 233

Query: 113 GFVIRSGYERCVVVSTNLMR--------------------------------GYAANGVI 140
              ++ G    ++VS  L+R                                 YA  G +
Sbjct: 234 AHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRV 293

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
             AR++FD MP R+ VSW+++++ Y QA    EAL L+ RM+ + V  D   LV +L++C
Sbjct: 294 TDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAAC 353

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
           A +G L  G ++H          +V++G ALVDMYAKCG +  A  VF  M++++VL+W 
Sbjct: 354 AQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWT 413

Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
           +MI G  +HGRG EA+  F QM   G  PD I F+G LC C+H GLV++G E F  MV +
Sbjct: 414 TMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRK 473

Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEI 379
           Y +KP I+HYGC+VDL  R G L +A E++       D ++W  L+  C+ H+NVE+ E 
Sbjct: 474 YGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEY 533

Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
            +K+ ++LE   +G YVLL  IYA +         R L++  G+  TPG S +EI   +H
Sbjct: 534 VVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIH 593

Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKF-IGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
           +F+V D SHP  + I  K +EI  R +   GY  D+  V +     E   E + + HSEK
Sbjct: 594 QFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEK--ENALSRHSEK 651

Query: 499 LAIAFGLATTPDGTSLRIVKNLR 521
           +AIAF L  T D   +RIVKNLR
Sbjct: 652 MAIAFALINTSDDMPIRIVKNLR 674



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 117/246 (47%), Gaps = 5/246 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+ +YA   +  ++ A+ LF+++      +W++++  + Q+    +A+  +  M  A   
Sbjct: 283 LITAYA--RAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARM-QADGV 339

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           RPD       L AC ++  L + + +HG++  +     V + T L+  YA  G ++ A  
Sbjct: 340 RPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAME 399

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VF  M E+++++W ++I          EAL+L+ +M    V  D    +  L +C H G 
Sbjct: 400 VFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGL 459

Query: 206 LNMGIFL-HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
           ++ G  L   +  + G    +     +VD+ A+ G L+ A  +  +M  K D L W +++
Sbjct: 460 VDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALM 519

Query: 264 VGYGVH 269
            G   H
Sbjct: 520 AGCRFH 525


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 175/510 (34%), Positives = 287/510 (56%), Gaps = 21/510 (4%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WN+L   +A+     QA + ++      L++ +  ++   +    +     KC  L   +
Sbjct: 193 WNALTDMYAKCGEIEQARWLFD-----CLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQM 247

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
             SG+    V  + ++  Y   G ++ AR VF    E+D+V W +++  Y +     +AL
Sbjct: 248 RLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDAL 307

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
            L+  M  E +  D +TL  ++SSCA + +L+ G  +H  +   G   ++ V +AL+DMY
Sbjct: 308 LLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMY 367

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           +KCG +D A  VF+ M  R+V+SWN+MIVG   +G   +A+  F+ ML   F PD++TF+
Sbjct: 368 SKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFI 427

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSS 354
           G+L  C H   +E+G EYF  + +++ + P + HY C+V+L GR G++E+A+ +I N + 
Sbjct: 428 GILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAH 487

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
             D ++W TLL  C    ++   E+A ++L +L+   A  Y++L+ +YA     + VA  
Sbjct: 488 DPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASV 547

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
           R L+KS  +K   G+SWIEI N+VH+F  +D++HP+++ IY KL  ++ + +  G+T + 
Sbjct: 548 RNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNT 607

Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS-LRIVKNLR------------ 521
           +LV       E F  KS  +HSEKLA+AFGL   P+G S +RI+KN+R            
Sbjct: 608 NLVLHDVGEDEKF--KSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFA 665

Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           S    R +I+RD  R+HHF  G CSC D W
Sbjct: 666 SRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 148/299 (49%), Gaps = 9/299 (3%)

Query: 53  TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
           ++A+  L+    ++    QA    +HM        D+F     L    +   L   Q L 
Sbjct: 22  SEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLF 81

Query: 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
             +++    R +     L+  YA +G I+  ++ FD MP RD VS+N+ I+ ++  S   
Sbjct: 82  DKMLK----RDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQ 137

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           E+L+L++RM+ E      +T+V +L++ A +  L  G  +H       F+ +V++ NAL 
Sbjct: 138 ESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALT 197

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           DMYAKCG ++ A  +F  + K++++SWN MI GY  +G+ ++ I    QM ++G  PD +
Sbjct: 198 DMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQV 257

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
           T   ++      G V+E    F    S +  K  +     +V  Y + G+ E AL + N
Sbjct: 258 TMSTIIAAYCQCGRVDEARRVF----SEFKEKDIVCWTAMMVG-YAKNGREEDALLLFN 311



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 150/361 (41%), Gaps = 66/361 (18%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-----------PLQAIFYYNHM------- 79
           L  AQ LF+++      +WN+L+ A+A+S S           P +    YN         
Sbjct: 74  LRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGN 133

Query: 80  --------LMASLSR----PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
                   L   + R    P  +T    L A  ++  L   +++HG +I   +   V + 
Sbjct: 134 SCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIW 193

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
             L   YA  G IE AR +FD + +++LVSWN +IS Y +     + + L  +MR     
Sbjct: 194 NALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHM 253

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
            D  T+  ++++                                   Y +CG +D A  V
Sbjct: 254 PDQVTMSTIIAA-----------------------------------YCQCGRVDEARRV 278

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           FS  +++D++ W +M+VGY  +GR ++A+  F +ML+    PDS T   ++  C+    +
Sbjct: 279 FSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASL 338

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
             G +  H       L   +     L+D+Y + G ++ A  V N     + V W  ++  
Sbjct: 339 HHG-QAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVG 397

Query: 368 C 368
           C
Sbjct: 398 C 398



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 16/137 (11%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +FN +      +WN++I   AQ+     A+  + +ML     +PD  TF   L AC 
Sbjct: 376 ARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKF-KPDNVTFIGILSACL 434

Query: 101 RVKALNKCQEL-------HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-E 152
               + + QE        HG      +  C+V   NL+      G IE A ++  NM  +
Sbjct: 435 HCNWIEQGQEYFDSITNQHGMTPTLDHYACMV---NLL---GRTGRIEQAVALIKNMAHD 488

Query: 153 RDLVSWNSIIS-CYTQA 168
            D + W++++S C T+ 
Sbjct: 489 PDFLIWSTLLSICSTKG 505


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 187/528 (35%), Positives = 283/528 (53%), Gaps = 22/528 (4%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQLL +   N     W +LI    Q+     A+F++++M   S+ +P+ FTF    KA  
Sbjct: 61  AQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSI-QPNDFTFPCAFKASG 119

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +++    +++H   +++G    V V  +    Y+  G+ E AR +FD MPER++ +WN+
Sbjct: 120 SLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNA 179

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
            +S       + +AL  +   R E +    F +  +LS+CA +  L +G  +H +A +  
Sbjct: 180 YLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKAC 239

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            V +++VG+ALVDMY KCG+++ A   F  M +R++++WN+MI GY   G+ D A++ F 
Sbjct: 240 VVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFD 299

Query: 281 QMLMAGFH---PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
           +M   G H   P+ +TF+ +L  CS  G V  G+E F  M  RY ++PG +HY C+VDL 
Sbjct: 300 EM-TCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLL 358

Query: 338 GRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
           GRAG +E+A + I    P  P   +W  LLG+ K+    E+G++A  NL +L+   +G++
Sbjct: 359 GRAGMVEQAYQFIK-KMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNH 417

Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           VLL+ ++A     E     RK +K  GIK   G SWI  GN VH F   D SH     I 
Sbjct: 418 VLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQ 477

Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
             L ++    +  GY  D S         E  +E    YHSEK+A+AFGL + P G  +R
Sbjct: 478 AMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAME--VWYHSEKIALAFGLISIPAGVPIR 535

Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           I KNLR            S    R++IVRD   +H FRD  CSC DYW
Sbjct: 536 ITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 30/221 (13%)

Query: 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285
           ++ N LV+MY+K    +SA  + S    R V++W ++I G   +GR   A+  F  M   
Sbjct: 43  FIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRD 102

Query: 286 GFHPDSITFLGLLCGCSHQGLVEEGV--EYFHMMVSRYNLKPGIKHYGC-LVDLYGRAGK 342
              P+  TF    C     G +   +  +  H +  +      +   GC   D+Y +AG 
Sbjct: 103 SIQPNDFTF---PCAFKASGSLRSPLVGKQVHALAVKAGQISDV-FVGCSAFDMYSKAGL 158

Query: 343 LEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
            E+A ++ +     +   W   L +  +                       D  L A I 
Sbjct: 159 TEEARKMFDEMPERNIATWNAYLSNSVLEGRY-------------------DDALTAFIE 199

Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
           A    +EG+  T  ++ S+ +    G S +E+G  VH   V
Sbjct: 200 A---RKEGIEPTDFMV-SSVLSACAGLSVLEVGKSVHTLAV 236


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 196/596 (32%), Positives = 308/596 (51%), Gaps = 57/596 (9%)

Query: 4   KKHARYV--GLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIR 61
           K HA+ V  GLN+ +         LL++Y     + L  A  LF+++      +W S++ 
Sbjct: 23  KIHAQIVKSGLNQCQPLPNT----LLDAYG--KCNLLQDAHYLFDEMPQRDHVSWASILT 76

Query: 62  AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
           A+ Q+  P + +  +++M      +PD F +   LKAC  + +L   +++H   + S + 
Sbjct: 77  AYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFV 136

Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNM------------------------------- 150
              VV ++L+  YA  G+   ARSVFD++                               
Sbjct: 137 DDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRT 196

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL-DGFTLVCLLSSCAHVGALNMG 209
           P R+L SW ++IS   Q+ + ++   ++  MR E V + D   L  ++ +CA++  L +G
Sbjct: 197 PVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLG 256

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H +    G+   +++ NALVDMYAKC ++ +A  VF+RM  RDV+SW S+IVG   H
Sbjct: 257 KQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQH 316

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           GR  EA+  + QM++A   P+ +TF+GL+  CSH GLV +G + F  M+  Y + P ++ 
Sbjct: 317 GRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQL 376

Query: 330 YGCLVDLYGRAGKLEKALEVINT--SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
           + C +DL  R+G L +A ++I T    P +P  W  LL +CK H N E+G      L+ L
Sbjct: 377 FTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPT-WAALLSACKHHGNTEMGVRIADRLLSL 435

Query: 388 EAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKS 447
                  YVLL+ +YA     E ++R RKL+    +K  PG+S I++G +   F   +  
Sbjct: 436 NMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETC 495

Query: 448 HPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLAT 507
           HP  D I+  L+E+    +  GY  D S V       E   E+   +HSE+ A+A+GL  
Sbjct: 496 HPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEK--ERELFWHSERWAVAYGLLK 553

Query: 508 TPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
              GT +RIVKNLR            S    +++IVRD  RYHHF+DG CSC D+W
Sbjct: 554 AVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 162/367 (44%), Gaps = 44/367 (11%)

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
           ++   LK C + +A    +++H  +++SG  +C  +   L+  Y    +++ A  +FD M
Sbjct: 4   SYLHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEM 63

Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMG 209
           P+RD VSW SI++ Y QA    + L ++  M   D +  D F    LL +CA + +L +G
Sbjct: 64  PQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLG 123

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H       FV+   V ++LVDMYAKCG    A  VF  +  +  +SW +M+ GY   
Sbjct: 124 KQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARS 183

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG-----------LVEEGVEYFHMMV 318
           G  DEA+  F +  +   +    ++  L+ G    G           +  EGV+    +V
Sbjct: 184 GLKDEAMELFLRTPVRNLY----SWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLV 239

Query: 319 ------------------SRYNLKPGIKHYGC------LVDLYGRAGKLEKALEVINTSS 354
                               + L  G  +  C      LVD+Y +   +  A  V N   
Sbjct: 240 LSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRML 299

Query: 355 PSDPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
             D V W +++ G+ +  R  E   + + + + L      +   +  IYAC+     V++
Sbjct: 300 HRDVVSWTSIIVGAAQHGRAKE--ALDLYDQMVLAEIKPNEVTFVGLIYACSH-AGLVSK 356

Query: 414 TRKLIKS 420
            RKL K+
Sbjct: 357 GRKLFKA 363


>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 177/482 (36%), Positives = 265/482 (54%), Gaps = 33/482 (6%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           RPD   F    KAC  +   +  Q +H F +++GY+  V V ++++  YA  G I  AR 
Sbjct: 7   RPDDHIFPSATKACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGDARK 66

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           +FD MP+R++VSW+ +I  Y+Q     EAL+L+++   ED+ ++ FT   ++  C +   
Sbjct: 67  MFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRVCGNSTL 126

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L +G  +H +  +  +  S +VG++L+ +Y+KCG ++ A+ VF  +  R++  WN+M++ 
Sbjct: 127 LELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNLGMWNAMLIA 186

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
              H   ++A   FKQM   G  P+ ITFL +L  CSH GLVE+G  YF +M   Y ++P
Sbjct: 187 CAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEKGQFYFELM-KEYGIEP 245

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKN 383
           G +HY  +VDL GRAGKL+ A+ +I    P +P   +W  LL  C+IH + E+       
Sbjct: 246 GAQHYASMVDLLGRAGKLKDAVSIIK-KMPMEPTESVWGALLTGCRIHGDTELASFVADR 304

Query: 384 LVQLEAAS--AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
           + +L   S  AG Y             E  AR RK+++  G+K   G SW+E GN++H F
Sbjct: 305 VFELGPVSSAAGRY-------------EEAARARKMLRDQGVKKETGLSWVEEGNRIHTF 351

Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
              D+SHP    IY+KLEE+    +  GY  D S V       E    ++  YHSE+LAI
Sbjct: 352 AAGDRSHPYTKDIYKKLEELGEEMERAGYIADTSFVLQEVDGEEK--NQTIRYHSERLAI 409

Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
           AFGL + P    +R++KNLR            S    R +IVRD  R+H F DG CSC D
Sbjct: 410 AFGLISFPPERPIRVMKNLRVCGDCHTAIKFMSKCCGRTIIVRDNNRFHRFEDGNCSCRD 469

Query: 550 YW 551
           YW
Sbjct: 470 YW 471


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 199/593 (33%), Positives = 301/593 (50%), Gaps = 51/593 (8%)

Query: 4   KKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAF 63
           + HAR +    A+  H      L+++YA   S  L   +LLF++        ++SL+ A 
Sbjct: 24  RAHARLIKEGLAQ--HPPAPALLVSAYA--KSRLLPDTRLLFDETPRRDLHLYSSLLAAV 79

Query: 64  AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
           + S SP   +     ML A   RPD F       A  R+++L   ++LHG  + S Y   
Sbjct: 80  SHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSD 139

Query: 124 VVVSTNLMRGYAANGVIEAARSVFDN-------------------------------MPE 152
            VV ++L+  Y   GV + AR VFD+                               MP 
Sbjct: 140 DVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPG 199

Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD-GFTLVCLLSSCAHVGALNMGIF 211
           R L +W ++IS + ++   + A+KL+  MR + V +D  F L   +   A + A  +G  
Sbjct: 200 RTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQ 259

Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
           LH +   +GF  S+ VGNA+VDMY+KC ++ SA  VF  +  RD++SW +M+VG   HGR
Sbjct: 260 LHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGR 319

Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
            +EA S + +M++AG  P+ +TF+GL+  CSH GLV++G + F  M   Y + P ++HY 
Sbjct: 320 AEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYT 379

Query: 332 CLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
           C +DL  R+G L +A E+I T     D   W +LL +CK + N E+      NL++L   
Sbjct: 380 CYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRPK 439

Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
               YVLL+ +YA     + V   RKL+    I+  PG+SWIE+G +   F   +     
Sbjct: 440 YPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDL 499

Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
            + I   LEE++   +  GY  D S  +V     E   E     HSE+LA+AFG+  +P 
Sbjct: 500 REEILGFLEELVSEMRQRGYVPDTS--SVMHDLEEHEKEHHLCLHSERLAVAFGILRSPL 557

Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           G+ +R+VKNLR            S  + R +IVRD  R+HHF  G CSC ++W
Sbjct: 558 GSVIRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 193/537 (35%), Positives = 293/537 (54%), Gaps = 42/537 (7%)

Query: 25  WLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
           W +    ++    LS A+LL  Q       +W SLI A++++    +A+  + +ML   +
Sbjct: 115 WTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGI 174

Query: 85  SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY---ERCVVVSTNL----------- 130
           + PD  T    L AC ++K L     LH  V   G    E  VV   ++           
Sbjct: 175 A-PDDVTVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAR 233

Query: 131 ------------------MRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
                             + GY  +G ++ ARS+FD M  RD++++NS+I+ Y  +    
Sbjct: 234 EVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLR 293

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC-EMGFVES-VYVGNA 230
           EAL L+  MR  D+ +D FT+V LLS+CA +GAL  G  LH  AC E+  VE+ +Y+G A
Sbjct: 294 EALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALH--ACIELRLVETDIYIGTA 351

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           L+DMY KCG ++ A  VF RM KRDV +W +MI G   +G G   + +F QM   GF P+
Sbjct: 352 LLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPN 411

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
            ++++ +L  CSH  L+ EG  YF  M   YN+ P I+HYGC++DL GR+G L++A++++
Sbjct: 412 PVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLV 471

Query: 351 NTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408
            T  P  P  V+W ++L +C++H+ +++ + A ++L+++E      YV L  I   ++  
Sbjct: 472 KT-MPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKW 530

Query: 409 EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFI 468
           E  ++ R L++   +K T G+S + +  QVHKFVV DKSHP    I   LEEI HR K  
Sbjct: 531 EDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSA 590

Query: 469 GYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSIAY 525
           GY+   S V V     E   E++   HSEKLAIAFGL +      + I+KNLR   +
Sbjct: 591 GYSPITSQVTVDVDEEEK--EQTLLAHSEKLAIAFGLVSLAPNLPVHIIKNLRPTIF 645



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 181/401 (45%), Gaps = 14/401 (3%)

Query: 45   FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
             N I +    +WNS++  +A      +A++Y   ML      P   +F   L    +   
Sbjct: 892  LNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHG-KMPSVRSFVSLLALSGKTGD 950

Query: 105  LNKCQELHGFVIRSGYE-RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
                 ++HG V + G+    V V T L+  Y      + + ++F+ +P   L   NS+I+
Sbjct: 951  WQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLIT 1010

Query: 164  CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS--SCAHVGALNMGIFLHRIACEMGF 221
                 +    AL++   M  E V  D  T    +   S +   +L     LH    ++GF
Sbjct: 1011 SSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGF 1070

Query: 222  VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
               + V ++L+  YA  G L S+  +F  +   +V+ + ++I     +G G  A+  F Q
Sbjct: 1071 EMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQ 1130

Query: 282  MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
            M+ +G  PD++TFL  + GC   G+ EEG     +M +   L P  +H+ C+V+L  R G
Sbjct: 1131 MVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDG 1190

Query: 342  KLEKALEVINTSSPSDPV-----LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
             +++A+E++  S    P+      W +LL SCK H    +G+ A   L+ +        +
Sbjct: 1191 FVKEAMEMMEQS----PLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTL 1246

Query: 397  LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQ 437
             ++  +    D E   R +++     +K + G S IE+ ++
Sbjct: 1247 QVSNFFNDIGDRETALRIKEMTNVKEVKKS-GHSLIEVSHR 1286



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 140/305 (45%), Gaps = 42/305 (13%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK--ACERVKALNKCQELH 112
           A  +  RA   S  P      +  M  A++ RPD FTF F  K  +  R +AL  C  LH
Sbjct: 11  ALRACFRAGTSSGDPDIPFVLFRRMRRAAV-RPDGFTFHFLFKCSSSSRPRAL-LCTMLH 68

Query: 113 GFVIRSGYERCV-VVSTNLMRGYAANGVIEAARSVFDNMPER------------------ 153
              +R+        V+ +L+  Y   G+    R  FD +P +                  
Sbjct: 69  AACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGML 128

Query: 154 -------------DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
                        D++SW S+I+ Y++A    EA+  ++ M  E +  D  T++ +LS+C
Sbjct: 129 SDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSAC 188

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM-RKRDVLSW 259
           + +  L +G  LH +  E G   S  +  AL+DMYAKCG+   A  VF  + R R   SW
Sbjct: 189 SQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSW 248

Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
           N++I GY  HG  D A S F QM +     D ITF  ++ G  H G + E +  F M + 
Sbjct: 249 NAIIDGYCKHGHVDVARSLFDQMEVR----DIITFNSMITGYIHSGQLREALLLF-MNMR 303

Query: 320 RYNLK 324
           R++L+
Sbjct: 304 RHDLR 308



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 124/275 (45%), Gaps = 8/275 (2%)

Query: 80  LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
           ++AS  R    TF+  L  C   +AL    +LHG V+  G      V + L+  Y     
Sbjct: 726 MVASGIRETPHTFSTILGVCSTYEAL----QLHGRVLALGLCCNPFVGSALVNHYMHVES 781

Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
             AA S+F  +P ++    N ++          E +  +  MR + + L+G +    +  
Sbjct: 782 PHAALSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKG 841

Query: 200 CAHVGA-LNMGIFLHRIACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
           C   G  L  G  LH +  + G++ S +++ N+LVD+Y+  G+        + +   DV+
Sbjct: 842 CYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVI 901

Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
           SWNS++  Y   G   EA+ + KQML  G  P   +F+ LL      G  + GV+  H +
Sbjct: 902 SWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQ-IHGI 960

Query: 318 VSRYNLKPGIKHY-GCLVDLYGRAGKLEKALEVIN 351
           V +        H    L+D+YG+    + +L + N
Sbjct: 961 VHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFN 995



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 5/218 (2%)

Query: 149 NMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208
            M  RD+ S N +I+ + +      A  +Y  M    +     T   +L  C+   AL  
Sbjct: 694 TMAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQ- 752

Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
              LH     +G   + +VG+ALV+ Y    +  +A  +F  +  ++    N ++ G G 
Sbjct: 753 ---LHGRVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGN 809

Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GI 327
               +E I  F  M       + +++   + GC   G   E     H +V +    P  I
Sbjct: 810 LKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNI 869

Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
                LVDLY   G     ++ +N     D + W ++L
Sbjct: 870 FLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSIL 907


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 165/370 (44%), Positives = 229/370 (61%), Gaps = 17/370 (4%)

Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
           +L +CA V AL  G  +H    ++GF   V V N LVDMY KCG ++ A  VFS++ + D
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
           V SWN+MI G   HG G EA+  F+QML  G  P+ ITF+ +L GCSH GLV+EG  YF 
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRN 373
            M   + + P  +HY C+VDL+GRAG L++AL  IN   P +P   +W +LLG+C++H N
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFIN-QMPVEPNASVWGSLLGACRVHGN 182

Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIE 433
           +E+ E A++ L++L   + G YVLL+ IYA     +   + RK++K   +K  PG SWIE
Sbjct: 183 IELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIE 242

Query: 434 IGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA 493
           + N+VH F+V D SHP  + IY  LE +  + K  GY  + + V       E+  E    
Sbjct: 243 VQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVL--HDVEEEQKEWILG 300

Query: 494 YHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFR 541
           +HSEKLAIAFG+ +TP GT++R+VKNLR            S   SR++++RD  R+HHF+
Sbjct: 301 HHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFK 360

Query: 542 DGLCSCGDYW 551
           DG CSCGDYW
Sbjct: 361 DGQCSCGDYW 370



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 2/190 (1%)

Query: 96  LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
           L+AC  V AL + +++H  +I+ G+E  V VS  L+  Y   G IE A+ VF  + E D+
Sbjct: 5   LRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDV 64

Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHR 214
            SWN++IS   Q     EA+ L+E+M    V  +  T V +LS C+H G ++ G  +   
Sbjct: 65  ASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDS 124

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSMIVGYGVHGRGD 273
           +  + G        + +VD++ + G LD A    ++M      S W S++    VHG  +
Sbjct: 125 MTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIE 184

Query: 274 EAISFFKQML 283
            A    +Q++
Sbjct: 185 LAERAVEQLI 194


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 198/567 (34%), Positives = 299/567 (52%), Gaps = 59/567 (10%)

Query: 41  AQLLFNQIQNPQ--TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
           A+ +F++I +    T  W +L+  F +     +A+  +  M    + +PD  T       
Sbjct: 69  ARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGV-KPDEVTLVCLFGG 127

Query: 99  CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF----------- 147
           C R+  +    + HG +++ G          +M  YA +G++  AR VF           
Sbjct: 128 CARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSW 187

Query: 148 --------------------DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-DV 186
                               D MPER+ V+W  +I+ Y  +    E+  L   M F+ ++
Sbjct: 188 TVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEM 247

Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAF 245
            L+  TL  +L++C+  G L MG ++H  A +    E ++ VG A+VDMYAKCG +  AF
Sbjct: 248 ELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAF 307

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
             F +M +R+V+SWN+M+ G  +HG G  A+  F QM      PD +TF  +L  CSH G
Sbjct: 308 KFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSG 366

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRT 363
           LV++G  YF  + S Y + P ++HY C+VDL GRAG+LE+A E++    P  P  V+  +
Sbjct: 367 LVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEA-EILVREMPIRPNEVVLGS 425

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LLGSC IH  +++GE  ++ LVQL+  +   ++LL+ +YA    +      R+++K  GI
Sbjct: 426 LLGSCSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGI 485

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
           K  PG S I +G QVH+F   DKSHP    +Y  L+E++ R +  GY  + +L   +G  
Sbjct: 486 KKVPGMSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCD 545

Query: 484 S-EDFL----EKSSAY--HSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
           S ED L    EK  A   HSEKLAI FGL +T  G  L I KNLR            S  
Sbjct: 546 SLEDDLVEQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKI 605

Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           Y+R++++RDR R+H F++G CSC DYW
Sbjct: 606 YNREIVIRDRNRFHCFKEGSCSCCDYW 632



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 157/375 (41%), Gaps = 54/375 (14%)

Query: 73  IFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC--VVVSTNL 130
           + +  H  ++S+SR     + F L++C R  +L+  + LH  +I +G        +   L
Sbjct: 1   MIWSRHTALSSVSR----HYRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNAL 56

Query: 131 MRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188
           ++ YA+ G    AR VFD +P   +D V W +++ C+ + +   EAL ++  MR   V  
Sbjct: 57  LQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKP 116

Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
           D  TLVCL   CA +G + +G   H    +MG        NA++DMYAK G +  A  VF
Sbjct: 117 DEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVF 176

Query: 249 SRMRKRDVLSWNS-------------------------------MIVGYGVHGRGDEAIS 277
             M+ + V+SW                                 MI GY   G   E+ +
Sbjct: 177 YEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFA 236

Query: 278 FFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG----- 331
             ++M+       + +T   +L  CS  G +  G       V  Y LK   K        
Sbjct: 237 LVREMIFDLEMELNYVTLCSILTACSQSGDLMMG-----RWVHAYALKTKEKELNIMVGT 291

Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL-EAA 390
            +VD+Y + G++  A +        + V W  +L    +H    +G  A+    Q+ + A
Sbjct: 292 AMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMH---GLGRAALDIFPQMFKEA 348

Query: 391 SAGDYVLLATIYACT 405
              D    + + AC+
Sbjct: 349 KPDDVTFTSVLSACS 363


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 193/575 (33%), Positives = 296/575 (51%), Gaps = 55/575 (9%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+N YA  +   +  AQ +F+ + +     WNSL   +     P + +  +  M++  + 
Sbjct: 384 LVNLYANCLC--VREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGV- 440

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +PD  T    L AC  ++ L   + +HGF +R G    V V   L+  YA    +  A+ 
Sbjct: 441 KPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQV 500

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD +P R++ SWN I++ Y     + + L ++ +M  ++V  D  T   ++  C     
Sbjct: 501 VFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSR 560

Query: 206 LNMGIFLHRIACEMGF----------------VESVYVG-------------------NA 230
           +   + + R    MGF                 E + +G                   NA
Sbjct: 561 IEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNA 620

Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
           LVDMYAKCG L  +  VF  M  +DV SWN+MI   G+HG G EA+S F++ML++   PD
Sbjct: 621 LVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPD 680

Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
           S TF  +L  CSH  LVEEGV+ F+ M   + ++P  +HY C+VD+Y RAG LE+A   I
Sbjct: 681 SATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFI 740

Query: 351 NTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408
               P +P  + W+  L  C++++NVE+ +I+ K L +++   + +YV L  I    K  
Sbjct: 741 Q-RMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLW 799

Query: 409 EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFI 468
              ++ RKL+K  GI  TPG SW  +GN+VH FV  DKS+ ++D IY  L+E+  + K  
Sbjct: 800 SEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAA 859

Query: 469 GYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------- 521
           GY  D   V       E    +S   HSEKLA+AFG+      +++R+ KNLR       
Sbjct: 860 GYKPDTDYVLHDIDQEEK--AESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHN 917

Query: 522 SIAYSRD-----LIVRDRVRYHHFRDGLCSCGDYW 551
           +I Y  +     ++VRD +R+HHF++G CSC D+W
Sbjct: 918 AIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 177/365 (48%), Gaps = 3/365 (0%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +F+ +       WNSL   +     P Q +  +  M +  + + +  T +  L  C 
Sbjct: 94  ARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKV-KANPLTVSSILPGCS 152

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            ++ L   +E+HGFV+R G    V VS+  +  YA    +  A++VFD MP RD+V+WNS
Sbjct: 153 DLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNS 212

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           + SCY    F  + L ++  M  + V  D  T+ C+LS+C+ +  L  G  +H  A + G
Sbjct: 213 LSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHG 272

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
            VE+V+V NALV++Y  C  +  A  VF  M  R+V++WNS+   Y   G   + ++ F+
Sbjct: 273 MVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFR 332

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M + G  PD +    +L  CS    ++ G +  H    ++ +   +     LV+LY   
Sbjct: 333 EMGLNGVKPDPMAMSSILPACSQLKDLKSG-KTIHGFAVKHGMVEDVFVCTALVNLYANC 391

Query: 341 GKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
             + +A  V +     + V W + L SC ++       + +   + L         +L+ 
Sbjct: 392 LCVREAQTVFDLMPHRNVVTWNS-LSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSI 450

Query: 401 IYACT 405
           ++AC+
Sbjct: 451 LHACS 455



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 184/413 (44%), Gaps = 49/413 (11%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           AQ +F+ + +     WNSL   +     P + +  +  M +  + +PD    +  L AC 
Sbjct: 296 AQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGV-KPDPMAMSSILPACS 354

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
           ++K L   + +HGF ++ G    V V T L+  YA    +  A++VFD MP R++V+WNS
Sbjct: 355 QLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNS 414

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           + SCY    F  + L ++  M    V  D  T++ +L +C+ +  L  G  +H  A   G
Sbjct: 415 LSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHG 474

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV------------ 268
            VE V+V NAL+ +YAKC  +  A  VF  +  R+V SWN ++  Y              
Sbjct: 475 MVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFS 534

Query: 269 -----------------------HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
                                  + R +EA+  F++M   GF PD  T   +L  CS   
Sbjct: 535 QMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSE 594

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
            +  G E  H  V R+     +     LVD+Y + G L  +  V +     D   W T++
Sbjct: 595 CLRMGKE-IHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMI 653

Query: 366 GSCKIHRN----VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGV 411
            +  +H N    + + E  + ++V+ ++A+         + AC+     EEGV
Sbjct: 654 FANGMHGNGKEALSLFEKMLLSMVKPDSAT-----FTCVLSACSHSMLVEEGV 701



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 135/286 (47%), Gaps = 2/286 (0%)

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
           +PD   F    KAC   +   K ++ H    R G    V +    +  Y     +E AR 
Sbjct: 37  KPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARR 96

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD++  RD+V+WNS+ +CY    F  + L ++ +M    V  +  T+  +L  C+ +  
Sbjct: 97  VFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQD 156

Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
           L  G  +H      G VE V+V +A V+ YAKC  +  A  VF  M  RDV++WNS+   
Sbjct: 157 LKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSC 216

Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
           Y   G   + ++ F++M++ G  PD +T   +L  CS    ++ G +  H    ++ +  
Sbjct: 217 YVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSG-KAIHGFALKHGMVE 275

Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
            +     LV+LY     + +A  V +     + + W + L SC ++
Sbjct: 276 NVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNS-LASCYVN 320


>gi|297720639|ref|NP_001172681.1| Os01g0884800 [Oryza sativa Japonica Group]
 gi|20161229|dbj|BAB90156.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|255673935|dbj|BAH91411.1| Os01g0884800 [Oryza sativa Japonica Group]
          Length = 517

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 171/440 (38%), Positives = 250/440 (56%), Gaps = 16/440 (3%)

Query: 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185
           V+  L+  YA    + AAR+VFD MP RD+V+W S+++   +A  H  A++ Y  M    
Sbjct: 80  VANALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHGLAVRAYRDMVAAG 139

Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
           V  D F +  +LSSCA   AL +G  +H  A   G    + VGN+LV MYAK G+L  A 
Sbjct: 140 VATDEFAVAAVLSSCAGSTALELGRSVHAAAVRSGHEPFLSVGNSLVSMYAKTGSLRDAR 199

Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
            VF  MR R  ++W ++IVGY  +GRG E+++ +  M  +G  PD +TF+GLL  CSH G
Sbjct: 200 TVFDAMRSRCAITWTALIVGYAQNGRGRESLAVYADMARSGCRPDYVTFVGLLFACSHAG 259

Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRT 363
           L++ G  +F  M S + + PG  HY C+VDL GRAG+L +A+++++ S  +  D  +W+ 
Sbjct: 260 LLDAGRAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAVDLLDRSPAAELDATVWKA 319

Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
           LL +C+ HRN  + E A   + +L+   A  YV+L+ +Y+  +    VAR R L++S GI
Sbjct: 320 LLAACRTHRNAALAERAAGMVWRLDPTDAMPYVMLSNLYSRARRWGDVARVRALMRSRGI 379

Query: 424 KTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
              PG SW+ +    H F   D+ H  A  IYRK EE+  R +  G+  D    A+   +
Sbjct: 380 SKEPGCSWVVVAGVTHVFHAGDRDHQRAAEIYRKAEEMAARIRARGHVPDTEW-ALQDEA 438

Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIV 531
            E   E   A+H E+LA+AFGL   P    +R+ KNLR            +  Y R++I+
Sbjct: 439 PEG-REMGLAHHGERLAVAFGLLAVPAAAPIRVYKNLRVCGDCHAAIKMVAEVYGREIIL 497

Query: 532 RDRVRYHHFRDGLCSCGDYW 551
           RD   +HH +DG CSCGDYW
Sbjct: 498 RDSNCFHHMKDGSCSCGDYW 517



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 6/247 (2%)

Query: 26  LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
           L+++YA    S L  A+ +F+++       W SL+   A++ S   A+  Y  M+ A ++
Sbjct: 84  LVDAYA--KLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHGLAVRAYRDMVAAGVA 141

Query: 86  RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
             D F     L +C    AL   + +H   +RSG+E  + V  +L+  YA  G +  AR+
Sbjct: 142 -TDEFAVAAVLSSCAGSTALELGRSVHAAAVRSGHEPFLSVGNSLVSMYAKTGSLRDART 200

Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
           VFD M  R  ++W ++I  Y Q     E+L +Y  M       D  T V LL +C+H G 
Sbjct: 201 VFDAMRSRCAITWTALIVGYAQNGRGRESLAVYADMARSGCRPDYVTFVGLLFACSHAGL 260

Query: 206 LNMG-IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR--MRKRDVLSWNSM 262
           L+ G      +  E G          +VD+  + G L  A  +  R    + D   W ++
Sbjct: 261 LDAGRAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAVDLLDRSPAAELDATVWKAL 320

Query: 263 IVGYGVH 269
           +     H
Sbjct: 321 LAACRTH 327


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 189/543 (34%), Positives = 281/543 (51%), Gaps = 49/543 (9%)

Query: 55  AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
           +WN +I  F +S S L A+  + +M +  L +PD  + +  L A   +       ++H +
Sbjct: 177 SWNGMISGFNRSGSYLDAVLMFQNMHLEGL-KPDGTSVSSVLPAVGDLDMPLMGIQIHCY 235

Query: 115 VIRSG--------------YERCVVVS-----------------TNLMRGYAANGVIEAA 143
           VI+ G              Y +C   S                   L+ G + NG+++ A
Sbjct: 236 VIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNA 295

Query: 144 RSVFDNMPERDL--VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
             VF      DL  VSW S+I+  +Q    +EAL+L+  M+ E V  +  T+ CLL +C 
Sbjct: 296 LEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACG 355

Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
           ++ AL  G   H  +   G    VYVG+AL+DMYAKCG + ++   F  M  R+++SWNS
Sbjct: 356 NIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNS 415

Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
           ++ GY +HG+  EAI+ F+ M   G  PD ++F  +L  C+  GL EEG  YF  M   +
Sbjct: 416 LMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNH 475

Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIA 380
            ++  ++HY C+V L GR+G+LE+A  +I       D  +W  LL SC++H  V++GEIA
Sbjct: 476 GVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIA 535

Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
            K + +LE  + G+Y+LL+ IYA       V   R +++S G+K  PG+SWIEI N+VH 
Sbjct: 536 AKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHM 595

Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
            +  D SHP    I  KL ++    K  GY      V       E   E+    HSEKLA
Sbjct: 596 LLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVL--QDVEEQDKEQILCGHSEKLA 653

Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
           +  GL  T  G  L+++KNLR            S    R++ VRD  R+H F+ G+CSCG
Sbjct: 654 VVLGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCG 713

Query: 549 DYW 551
           DYW
Sbjct: 714 DYW 716



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/466 (22%), Positives = 190/466 (40%), Gaps = 80/466 (17%)

Query: 31  AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
           A   S S ++A +L   I  P+T    S +  F         I  +++ML   +  PD+ 
Sbjct: 23  ATKASLSQAHAHILKTGISLPETIQIFSKLNHFGH------VIRVFSYMLTQGIV-PDSR 75

Query: 91  TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
                +K C  + AL   +++H F + SG     VV ++L+  Y     ++ AR+VFD +
Sbjct: 76  VLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKL 135

Query: 151 P-----------------------------------ERDLVSWNSIISCYTQASFHLEAL 175
           P                                   E +LVSWN +IS + ++  +L+A+
Sbjct: 136 PQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAV 195

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
            +++ M  E +  DG ++  +L +   +    MGI +H    + G     +V +AL+DMY
Sbjct: 196 LMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMY 255

Query: 236 AKC-------------------------------GNLDSAFCVFSRMRKRD--VLSWNSM 262
            KC                               G +D+A  VF + +  D  V+SW SM
Sbjct: 256 GKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSM 315

Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
           I     +G+  EA+  F++M + G  P+S+T   LL  C +   +  G +  H    R  
Sbjct: 316 IASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHG-KAAHCFSLRNG 374

Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
           +   +     L+D+Y + G++  +    +     + V W +L+    +H       I + 
Sbjct: 375 IFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKT-FEAINIF 433

Query: 383 NLVQLEAASAGDYVLLATIYACTK---DEEGVARTRKLIKSNGIKT 425
            L+Q              + ACT+    EEG      + +++G++ 
Sbjct: 434 ELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEA 479


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 172/526 (32%), Positives = 284/526 (53%), Gaps = 19/526 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  LF ++      ++N L+  +A +    +++  +  +      R + F F   L    
Sbjct: 353 ASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRN-FPFATLLSIAA 411

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
               L+  +++H   I +     ++V  +L+  YA  G    A  +F ++  +  V W +
Sbjct: 412 ISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTA 471

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +IS Y Q   H + LKL+  M+   +G D  T   ++ +CA + +L +G  LH      G
Sbjct: 472 MISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSG 531

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           ++ +V+ G+ALVDMYAKCG++  A  +F  M  R+ +SWN++I  Y  +G GD  +  F+
Sbjct: 532 YISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFE 591

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
           +M+ +G  PDS++ L +LC CSH GLVEEG++YF  M   Y L P  +HY   +D+  R 
Sbjct: 592 EMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRG 651

Query: 341 GKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA-ASAGDYVL 397
           G+ ++A E +    P +P  ++W ++L SC IH+N E+ + A   L  ++    A  YV 
Sbjct: 652 GRFDEA-EKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVT 710

Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
           ++ IYA   + + V + +K ++  G+K  P +SW+EI ++ H F  +DK+HP    I +K
Sbjct: 711 MSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKK 770

Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
           L+E+  +    GY  D S      +  E+   +S  YHSE++AIAF L +TP+G+ + ++
Sbjct: 771 LDELEEKMVKKGYKPDSSCAL--HNVDEEVKVESLKYHSERIAIAFALISTPEGSPILVM 828

Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           KNLR            S    R++ VRD  R+HHFRDG C+C DYW
Sbjct: 829 KNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 177/379 (46%), Gaps = 21/379 (5%)

Query: 3   LKKHARYVGLNKARQAHE-----------IHGEWLLNSYAISVSSSLSYAQLLFNQIQNP 51
           L     +  +N+ RQ H            +    LL+SY  + S  L++   LFN I   
Sbjct: 205 LSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQ--LFNDIPER 262

Query: 52  QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111
            +  +N+L+  +++     +AI  +  M      RP  FTF   L A  ++  +   Q++
Sbjct: 263 DSVTFNALLTGYSKEGFNREAINLFFKMQEVGY-RPTEFTFAAILTAGIQLDDIEFGQQV 321

Query: 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171
           HGFV++  +   V V+  L+  Y+ +  +  A  +F  MPE D +S+N +++CY      
Sbjct: 322 HGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRV 381

Query: 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231
            E+L+L++ ++F       F    LLS  A    L++G  +H        +  + VGN+L
Sbjct: 382 KESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSL 441

Query: 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
           VDMYAKCG    A  +FS +  +  + W +MI  Y   G  ++ +  F +M  A    D+
Sbjct: 442 VDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADA 501

Query: 292 ITFLGLLCGCSHQGLVEEGVE-YFHMMVSRY--NLKPGIKHYGCLVDLYGRAGKLEKALE 348
            T+  ++  C+    +  G + + H++ S Y  N+  G      LVD+Y + G ++ AL+
Sbjct: 502 ATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSG----SALVDMYAKCGSIKDALQ 557

Query: 349 VINTSSPSDPVLWRTLLGS 367
           +       + V W  L+ +
Sbjct: 558 MFQEMPVRNSVSWNALISA 576



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 173/359 (48%), Gaps = 5/359 (1%)

Query: 35  SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94
           S +LS A+ LF+ +       W  LI  +AQ+    +A   +  M    +  PD  +   
Sbjct: 145 SGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGID-PDHVSLAT 203

Query: 95  TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
            L       ++N+ +++H  VI+ GY+  +VVS +L+  Y     +  A  +F+++PERD
Sbjct: 204 LLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERD 263

Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
            V++N++++ Y++  F+ EA+ L+ +M+        FT   +L++   +  +  G  +H 
Sbjct: 264 SVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHG 323

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
              +  FV +V+V NAL+D Y+K   +  A  +F  M + D +S+N ++  Y  +GR  E
Sbjct: 324 FVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKE 383

Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
           ++  FK++   GF   +  F  LL   +    ++ G +  H      +    I     LV
Sbjct: 384 SLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQ-IHSQTIVTDAISEILVGNSLV 442

Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
           D+Y + G+  +A  + +  +    V W  ++ S   +    + E  +K  V+++ A  G
Sbjct: 443 DMYAKCGEFGEANRIFSDLAIQSSVPWTAMISS---YVQKGLHEDGLKLFVEMQRAKIG 498



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 149/323 (46%), Gaps = 14/323 (4%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
           L N I  P T       R    +L+  +   + +  ++ +   P+T+   F +K+  +  
Sbjct: 63  LMNNIIKPCT-------RNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRG 115

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSII 162
            LN  ++L   +         + STN M  GY  +G +  AR++FD+M +R  V+W  +I
Sbjct: 116 DLNGARKLFDEMPHKN-----IFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLI 170

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
             Y Q +   EA  L+  M    +  D  +L  LLS      ++N    +H    ++G+ 
Sbjct: 171 GGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYD 230

Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
            ++ V N+L+D Y K  +L  AF +F+ + +RD +++N+++ GY   G   EAI+ F +M
Sbjct: 231 STLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKM 290

Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
              G+ P   TF  +L        +E G +  H  V + N    +     L+D Y +  +
Sbjct: 291 QEVGYRPTEFTFAAILTAGIQLDDIEFG-QQVHGFVVKCNFVWNVFVANALLDFYSKHDR 349

Query: 343 LEKALEVINTSSPSDPVLWRTLL 365
           + +A ++       D + +  L+
Sbjct: 350 VVEASKLFYEMPEVDGISYNVLV 372


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 179/524 (34%), Positives = 280/524 (53%), Gaps = 16/524 (3%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A  +F  +      A+NS+I  +      L         +     + D  ++   L  C 
Sbjct: 162 ASKVFESVSGFDAFAFNSMINGYLDR-GQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCA 220

Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
            +K      ++H   ++   E  V V + L+  Y     +  A   F+ +PE+++VSW +
Sbjct: 221 SMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTA 280

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +++ YTQ   + +AL+L+  M  E V  + FT    L+SCA + AL  G  L     + G
Sbjct: 281 VMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTG 340

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
             + + V NAL++MY+K G+++ A  VF  M  RDV+SWN +I GY  HG   E +  F 
Sbjct: 341 HWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFH 400

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
            ML A   P  +TF+G+L  C+  GLV+E   Y + M+    + PG +HY C+V L  R 
Sbjct: 401 SMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRV 460

Query: 341 GKLEKALE-VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
           G+L++A   ++N    +D V WR+LL SC++++N  +G    + ++QLE +  G YVLL+
Sbjct: 461 GRLDEAERFIVNNCIGTDVVAWRSLLNSCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLS 520

Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
            +YA     +GV + RK ++   ++ +PG SWI +G+ VH F  ++K HP  D I +KLE
Sbjct: 521 NMYAKANRWDGVVKVRKHMRERAVRKSPGVSWIHVGSDVHVFTSEEKVHPQMDQIAKKLE 580

Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKN 519
           E++ + K IGY  +     V     ++  E+   YHSEKLA+AFGL  TP G ++ I+KN
Sbjct: 581 ELIDQIKAIGYVPN--FAVVLHDIDDERKEEHLMYHSEKLALAFGLIHTPKGATIHIMKN 638

Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           LR            S+  SR ++VRD VR+H    G+CSC DYW
Sbjct: 639 LRICDDCHVAIKLISVVTSRKIVVRDAVRFHCIEGGICSCNDYW 682



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 168/355 (47%), Gaps = 17/355 (4%)

Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
           L+K + LH  +I + +   VV+  NL+  YA  G +  AR+VFD MP R+ VS N ++S 
Sbjct: 27  LSKGKALHARLITAAHFD-VVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSG 85

Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
           Y  +  H E+L+L   +R  D G++ + L   +S+ A+V + +MG   H  A + GF E 
Sbjct: 86  YASSGRHKESLQL---LRVVDFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQ 142

Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
            YV NA++ MY +C +++ A  VF  +   D  ++NSMI GY   G+ D ++   + M  
Sbjct: 143 RYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTG 202

Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
                D ++++ +L  C+       G +  H    +  L+  +     LVD+YG+   + 
Sbjct: 203 EAEKWDYVSYVAVLGHCASMKDSVLGAQ-VHAQALKKRLELNVYVGSALVDMYGKCDHVH 261

Query: 345 KALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV--QLEAASAGDYVLLATIY 402
            A          + V W  ++ +   +   E+ E A++  +  ++E     ++     + 
Sbjct: 262 DANRAFEVLPEKNVVSWTAVMTA---YTQNELYEDALQLFLDMEMEGVQPNEFTYAVALN 318

Query: 403 ACTKDEEGVA--RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
           +C     G+A  RT   + +  +KT   W  + + N +        S  DA  ++
Sbjct: 319 SCA----GLAALRTGNALGACVMKTGH-WDHLLVSNALMNMYSKSGSIEDAHRVF 368



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 156/355 (43%), Gaps = 29/355 (8%)

Query: 88  DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
           + +  +  + A   V++ +  ++ HG+ +++G+     V   ++  Y     +E A  VF
Sbjct: 107 NEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVF 166

Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
           +++   D  ++NS+I+ Y        +L +   M  E    D  + V +L  CA +    
Sbjct: 167 ESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSV 226

Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
           +G  +H  A +     +VYVG+ALVDMY KC ++  A   F  + +++V+SW +++  Y 
Sbjct: 227 LGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYT 286

Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV----------EYFHMM 317
            +   ++A+  F  M M G  P+  T+   L  C+    +  G            + H++
Sbjct: 287 QNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLL 346

Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIG 377
           VS             L+++Y ++G +E A  V  +    D V W  ++     H     G
Sbjct: 347 VSN-----------ALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREG 395

Query: 378 EIAMKNLVQLEAASAGDYV-LLATIYACTK---DEEGVARTRKLIKSNGIKTTPG 428
             A  ++  L AA    YV  +  + AC +    +E       ++K  GI  TPG
Sbjct: 396 MEAFHSM--LSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGI--TPG 446


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 175/510 (34%), Positives = 287/510 (56%), Gaps = 21/510 (4%)

Query: 56  WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
           WN+L   +A+     QA + ++      L++ +  ++   +    +     KC  L   +
Sbjct: 193 WNALTDMYAKCGEIEQARWLFD-----CLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQM 247

Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
             SG+    V  + ++  Y   G ++ AR VF    E+D+V W +++  Y +     +AL
Sbjct: 248 RLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDAL 307

Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
            L+  M  E +  D +TL  ++SSCA + +L+ G  +H  +   G   ++ V +AL+DMY
Sbjct: 308 LLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMY 367

Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
           +KCG +D A  VF+ M  R+V+SWN+MIVG   +G   +A+  F+ ML   F PD++TF+
Sbjct: 368 SKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFI 427

Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSS 354
           G+L  C H   +E+G EYF  + +++ + P + HY C+V+L GR G++E+A+ +I N + 
Sbjct: 428 GILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAH 487

Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
             D ++W TLL  C    ++   E+A ++L +L+   A  Y++L+ +YA     + VA  
Sbjct: 488 DPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASV 547

Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
           R L+KS  +K   G+SWIEI N+VH+F  +D++HP+++ IY KL  ++ + +  G+T + 
Sbjct: 548 RNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNT 607

Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS-LRIVKNLR------------ 521
           +LV       E F  KS  +HSEKLA+AFGL   P+G S +RI+KN+R            
Sbjct: 608 NLVLHDVGEDEKF--KSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFA 665

Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
           S    R +I+RD  R+HHF  G CSC D W
Sbjct: 666 SRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 147/299 (49%), Gaps = 9/299 (3%)

Query: 53  TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
           ++A+  L+    ++    QA    +HM        D+F     L    +   L   Q L 
Sbjct: 22  SEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLF 81

Query: 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
             +++    R       L+  YA +G I+  ++ FD MP RD VS+N+ I+ ++  S   
Sbjct: 82  DKMLK----RDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQ 137

Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
           E+L+L++RM+ E      +T+V +L++ A +  L  G  +H       F+ +V++ NAL 
Sbjct: 138 ESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALT 197

Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
           DMYAKCG ++ A  +F  + K++++SWN MI GY  +G+ ++ I    QM ++G  PD +
Sbjct: 198 DMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQV 257

Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN 351
           T   ++      G V+E    F    S +  K  +     +V  Y + G+ E AL + N
Sbjct: 258 TMSTIIAAYCQCGRVDEARRVF----SEFKEKDIVCWTAMMVG-YAKNGREEDALLLFN 311



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 150/361 (41%), Gaps = 66/361 (18%)

Query: 38  LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-----------PLQAIFYYNHM------- 79
           L  AQ LF+++      +WN+L+ A+A+S S           P +    YN         
Sbjct: 74  LRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGN 133

Query: 80  --------LMASLSR----PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127
                   L   + R    P  +T    L A  ++  L   +++HG +I   +   V + 
Sbjct: 134 SCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIW 193

Query: 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187
             L   YA  G IE AR +FD + +++LVSWN +IS Y +     + + L  +MR     
Sbjct: 194 NALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHM 253

Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
            D  T+  ++++                                   Y +CG +D A  V
Sbjct: 254 PDQVTMSTIIAA-----------------------------------YCQCGRVDEARRV 278

Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
           FS  +++D++ W +M+VGY  +GR ++A+  F +ML+    PDS T   ++  C+    +
Sbjct: 279 FSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASL 338

Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
             G +  H       L   +     L+D+Y + G ++ A  V N     + V W  ++  
Sbjct: 339 HHG-QAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVG 397

Query: 368 C 368
           C
Sbjct: 398 C 398



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 16/137 (11%)

Query: 41  AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
           A+ +FN +      +WN++I   AQ+     A+  + +ML     +PD  TF   L AC 
Sbjct: 376 ARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKF-KPDNVTFIGILSACL 434

Query: 101 RVKALNKCQEL-------HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-E 152
               + + QE        HG      +  C+V   NL+      G IE A ++  NM  +
Sbjct: 435 HCNWIEQGQEYFDSISNQHGMTPTLDHYACMV---NLL---GRTGRIEQAVALIKNMAHD 488

Query: 153 RDLVSWNSIIS-CYTQA 168
            D + W++++S C T+ 
Sbjct: 489 PDFLIWSTLLSICSTKG 505


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 193/531 (36%), Positives = 279/531 (52%), Gaps = 48/531 (9%)

Query: 67  LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG------- 119
           L+P  A+  ++H+L  S + PD   +   L  C R +A     +LHG   + G       
Sbjct: 54  LNPHLALRLFDHLLR-SGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRV 112

Query: 120 -------YERC-----------------VVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
                  Y  C                 ++    L+RGYA      A R  F  MP RD 
Sbjct: 113 RNGLIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDS 172

Query: 156 VSWNSIISCYTQASFHLEALKLY-ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
           VSWN++I+       H EA+ ++ E +   +   D  TLV ++S+ A++GAL  G++ H 
Sbjct: 173 VSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHA 232

Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF-SRMRKRDVLSWNSMIVGYGVHGRGD 273
             C         + +AL++MY+KCG ++ A  VF +    R V +WN+M+ G+   G  +
Sbjct: 233 YVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSE 292

Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
            A+  F +M  +GF P+ ITF  LL  CSH G VEEG+ YF  M +  +++P I HYGC+
Sbjct: 293 RALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCM 352

Query: 334 VDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392
           VDL+ RAG  EKA E+I       D  +W+ L+G+C+ + N E+G+ A   L++      
Sbjct: 353 VDLFCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDH 412

Query: 393 GDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDAD 452
             YVLL+ IYA   + +GV + RKL+ + G++  PG S IE+   +H+F+  DKSH    
Sbjct: 413 AGYVLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRKR 472

Query: 453 MIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGT 512
            +Y  L EI  + K  GY  D S V +     ED  E S A HSE+LA+AFGL +T  GT
Sbjct: 473 DVYEMLSEICQQLKVAGYAPDTSQVLLD-IDDEDVKESSLALHSERLALAFGLISTAPGT 531

Query: 513 SLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
            +RIVKNLR            S  Y R ++VRD  R+H FR+G CSCGDYW
Sbjct: 532 PIRIVKNLRVCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 102/223 (45%), Gaps = 3/223 (1%)

Query: 44  LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
            F Q+    + +WN++I     +    +A+  +  ML ++  +PD  T    + A   + 
Sbjct: 163 FFAQMPARDSVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLG 222

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN-MPERDLVSWNSII 162
           AL +    H +V R   E    +S+ L+  Y+  G IE A  VF+N    R + +WN+++
Sbjct: 223 ALAQGLWAHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAML 282

Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEMGF 221
           + +T +     AL+L+ RM       +  T   LL++C+H G +  GI +  R+      
Sbjct: 283 AGFTASGCSERALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSI 342

Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
              +     +VD++ + G  + A  +   M  + D   W +++
Sbjct: 343 EPDIAHYGCMVDLFCRAGLFEKAEEMIQMMPMEPDAAVWKALV 385


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 190/565 (33%), Positives = 297/565 (52%), Gaps = 59/565 (10%)

Query: 41  AQLLFNQIQN----PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
           A+ LF ++++    P   +WN ++  F  +    +A+  +  ML+     PD  T +  L
Sbjct: 189 AKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGF-WPDGSTVSCVL 247

Query: 97  KACERVKALNKCQELHGFVIRSG--------------YERCVVVS--------------- 127
            A   ++ +    ++HG+VI+ G              Y +C  V                
Sbjct: 248 PAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIG 307

Query: 128 --TNLMRGYAANGVIEAARSVF----DNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
                + G + NG+++ A  VF    D   E ++V+W SII+  +Q    LEAL+L+  M
Sbjct: 308 SLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDM 367

Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
           +   V  +  T+  L+ +C ++ AL  G  +H  +   G  + VYVG+AL+DMYAKCG +
Sbjct: 368 QAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRI 427

Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
             A   F +M   +++SWN+++ GY +HG+  E +  F  ML +G  PD +TF  +L  C
Sbjct: 428 QLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSAC 487

Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVL 360
           +  GL EEG   ++ M   + ++P ++HY CLV L  R GKLE+A  +I       D  +
Sbjct: 488 AQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACV 547

Query: 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK--DEEGVARTRKLI 418
           W  LL SC++H N+ +GEIA + L  LE  + G+Y+LL+ IYA     DEE   R R+++
Sbjct: 548 WGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEEN--RIREVM 605

Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
           KS G++  PG+SWIE+G++VH  +  D+SHP    I  KL+++  + K  GY    + V 
Sbjct: 606 KSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVL 665

Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
                 E   E+    HSEKLA+  GL  T  G  L+++KNLR            S    
Sbjct: 666 --QDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEG 723

Query: 527 RDLIVRDRVRYHHFRDGLCSCGDYW 551
           R++ VRD  R+HHF+DG+CSCGD+W
Sbjct: 724 REIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 121/501 (24%), Positives = 217/501 (43%), Gaps = 94/501 (18%)

Query: 12  LNKARQAHEI-----------HGEWLLNSYAISVSSSLSYAQL---LFNQIQNPQTQAWN 57
           L++ARQAH +               LL+ YA ++S  LS  QL   L + + +P   +++
Sbjct: 16  LSQARQAHALILRLNLFSDTQLTTSLLSFYANALS--LSTPQLSLTLSSHLPHPTLFSFS 73

Query: 58  SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117
           SLI AFA+S      +  ++H+    L  PD F     +K+C  ++AL+  Q+LH F   
Sbjct: 74  SLIHAFARSHHFPHVLTTFSHLHPLRLI-PDAFLLPSAIKSCASLRALDPGQQLHAFAAA 132

Query: 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177
           SG+    +V+++L   Y     I  AR +FD MP+RD+V W+++I+ Y++     EA +L
Sbjct: 133 SGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKEL 192

Query: 178 YERMRF------------------------EDVGL-----------DGFTLVCLLSSCAH 202
           +  MR                         E VG+           DG T+ C+L +   
Sbjct: 193 FGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGC 252

Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC------------------------ 238
           +  + +G  +H    + G     +V +A++DMY KC                        
Sbjct: 253 LEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAF 312

Query: 239 -------GNLDSAFCVFSRMRKR----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
                  G +D+A  VF++ + +    +V++W S+I     +G+  EA+  F+ M   G 
Sbjct: 313 LTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGV 372

Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
            P+++T   L+  C +   +  G E  H    R  +   +     L+D+Y + G+++ A 
Sbjct: 373 EPNAVTIPSLIPACGNISALMHGKE-IHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLAR 431

Query: 348 EVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY-ACTK 406
              +  S  + V W  ++    +H   +  E      + L++    D V    +  AC +
Sbjct: 432 RCFDKMSALNLVSWNAVMKGYAMHGKAK--ETMEMFHMMLQSGQKPDLVTFTCVLSACAQ 489

Query: 407 D---EEGVARTRKLIKSNGIK 424
           +   EEG      + + +GI+
Sbjct: 490 NGLTEEGWRCYNSMSEEHGIE 510



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 117/242 (48%), Gaps = 9/242 (3%)

Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYA---ANGVIEAARSVFDNMPERDLVSWNS 160
           +L++ ++ H  ++R        ++T+L+  YA   +    + + ++  ++P   L S++S
Sbjct: 15  SLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSS 74

Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
           +I  + ++      L  +  +    +  D F L   + SCA + AL+ G  LH  A   G
Sbjct: 75  LIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASG 134

Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
           F+    V ++L  MY KC  +  A  +F RM  RDV+ W++MI GY   G  +EA   F 
Sbjct: 135 FLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFG 194

Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG------IKHYGCLV 334
           +M   G  P+ +++ G+L G  + G  +E V  F MM+ +     G      +   GCL 
Sbjct: 195 EMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLE 254

Query: 335 DL 336
           D+
Sbjct: 255 DV 256



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 116/251 (46%), Gaps = 9/251 (3%)

Query: 27  LNSYAISVSSS--LSYAQLLFNQIQNPQTQ----AWNSLIRAFAQSLSPLQAIFYYNHML 80
           LN++   +S +  +  A  +FN+ ++ + +     W S+I + +Q+   L+A+  +  M 
Sbjct: 309 LNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDM- 367

Query: 81  MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
            A    P+  T    + AC  + AL   +E+H F +R G    V V + L+  YA  G I
Sbjct: 368 QAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRI 427

Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
           + AR  FD M   +LVSWN+++  Y       E ++++  M       D  T  C+LS+C
Sbjct: 428 QLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSAC 487

Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNA-LVDMYAKCGNLDSAFCVFSRMR-KRDVLS 258
           A  G    G   +    E   +E      A LV + ++ G L+ A+ +   M  + D   
Sbjct: 488 AQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACV 547

Query: 259 WNSMIVGYGVH 269
           W +++    VH
Sbjct: 548 WGALLSSCRVH 558


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 185/544 (34%), Positives = 303/544 (55%), Gaps = 36/544 (6%)

Query: 33  SVSSSLSYAQLLFNQIQNPQ---TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
           SV   L  A+ +F+ + +      + W ++   ++++ SP  A+  Y  ML  S   P  
Sbjct: 185 SVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDML-CSFIEPGN 243

Query: 90  FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
           F+ +  LKAC  +K L   + +H  +++   +   VV   L++ Y  +G+ + AR VFD 
Sbjct: 244 FSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDG 303

Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
           M ER++V+WNS+IS  ++     E   L+ +M+ E +G    TL  +L +C+ V AL  G
Sbjct: 304 MSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTG 363

Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
             +H    +      V + N+L+DMY KCG ++ +  VF  M  +D+ SWN M+  Y ++
Sbjct: 364 KEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAIN 423

Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
           G  +E I+ F+ M+ +G  PD ITF+ LL GCS  GL E G+  F  M + + + P ++H
Sbjct: 424 GNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEH 483

Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
           Y CLVD+ GRAGK+++A++VI T  P  P   +W +LL SC++H NV +GEIA K L  L
Sbjct: 484 YACLVDILGRAGKIKEAVKVIET-MPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVL 542

Query: 388 EAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV---- 443
           E  + G+YV+++ IYA  K  + V + R+++K  G+K   G SW+++ +++  FV     
Sbjct: 543 EPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGY 602

Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY----HSEKL 499
           + ++  +   ++ +L+E + ++   GY+ + S+V        D  E++ A     HSE+L
Sbjct: 603 EFRNSDEYKKVWTELQEAIEKS---GYSPNTSVVL------HDVDEETKANWVCGHSERL 653

Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
           A  + L  T +G  +RI KNLR            S    R +++RD  R+HHF DG+CSC
Sbjct: 654 ATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSC 713

Query: 548 GDYW 551
            DYW
Sbjct: 714 KDYW 717


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.136    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,542,848,799
Number of Sequences: 23463169
Number of extensions: 344708822
Number of successful extensions: 882542
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8301
Number of HSP's successfully gapped in prelim test: 2938
Number of HSP's that attempted gapping in prelim test: 748480
Number of HSP's gapped (non-prelim): 46696
length of query: 551
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 403
effective length of database: 8,886,646,355
effective search space: 3581318481065
effective search space used: 3581318481065
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)