BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048830
         (551 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KU4|A Chain A, Trapping Of An Oxocarbenium Ion Intermediate In Up
           Crystals
 pdb|3KU4|B Chain B, Trapping Of An Oxocarbenium Ion Intermediate In Up
           Crystals
 pdb|3KU4|C Chain C, Trapping Of An Oxocarbenium Ion Intermediate In Up
           Crystals
 pdb|3KU4|D Chain D, Trapping Of An Oxocarbenium Ion Intermediate In Up
           Crystals
 pdb|3KUK|A Chain A, Trapping Of An Oxocarbenium Ion Intermediate In Up
           Crystals
 pdb|3KUK|B Chain B, Trapping Of An Oxocarbenium Ion Intermediate In Up
           Crystals
 pdb|3KVR|A Chain A, Trapping Of An Oxocarbenium Ion Intermediate In Up
           Crystals
 pdb|3KVR|B Chain B, Trapping Of An Oxocarbenium Ion Intermediate In Up
           Crystals
 pdb|3KVY|A Chain A, Trapping Of An Oxocarbenium Ion Intermediate In Up
           Crystals
 pdb|3KVY|B Chain B, Trapping Of An Oxocarbenium Ion Intermediate In Up
           Crystals
          Length = 309

 Score = 30.0 bits (66), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 212 LHRIACEMGFVESVYVGNAL--VDMYAKCGNLDSAFCVFSRMRKRDVL 257
           L R + E+G   +V VGN +  +D Y   G LD A C ++   K+D L
Sbjct: 189 LARCSAELGEFPTV-VGNTMCTLDFYEGQGRLDGALCSYTEKDKQDYL 235


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,059,599
Number of Sequences: 62578
Number of extensions: 634796
Number of successful extensions: 2009
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2009
Number of HSP's gapped (non-prelim): 2
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)