BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048830
(551 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/569 (56%), Positives = 416/569 (73%), Gaps = 29/569 (5%)
Query: 11 GLNKARQAHEIHGEWLLNSY--------------AISVSSSLSYAQLLFNQIQ-NPQTQA 55
G N ++ +IH ++N A+SV+ SLS+AQLLF+ +P T
Sbjct: 14 GCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSD 73
Query: 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
WN LIR F+ S SPL +I +YN ML++S+SRPD FTF F LK+CER+K++ KC E+HG V
Sbjct: 74 WNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSV 133
Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
IRSG+ +V+T+L+R Y+ANG +E A VFD MP RDLVSWN +I C++ H +AL
Sbjct: 134 IRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQAL 193
Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
+Y+RM E V D +TLV LLSSCAHV ALNMG+ LHRIAC++ V+V NAL+DMY
Sbjct: 194 SMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMY 253
Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
AKCG+L++A VF+ MRKRDVL+WNSMI+GYGVHG G EAISFF++M+ +G P++ITFL
Sbjct: 254 AKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFL 313
Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS- 354
GLL GCSHQGLV+EGVE+F +M S+++L P +KHYGC+VDLYGRAG+LE +LE+I SS
Sbjct: 314 GLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSC 373
Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
DPVLWRTLLGSCKIHRN+E+GE+AMK LVQLEA +AGDYVL+ +IY+ D + A
Sbjct: 374 HEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASM 433
Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
RKLI+S+ ++T PGWSWIEIG+QVHKFVVDDK HP++ +IY +L E+++RA GY ++
Sbjct: 434 RKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPED 493
Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
S + + S+ L + HSEKLAIA+GL T GT+LRI KNLR S
Sbjct: 494 S-NRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVS 552
Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
A++R++IVRDRVR+HHF DG+CSC DYW
Sbjct: 553 KAFNREIIVRDRVRFHHFADGICSCNDYW 581
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/540 (41%), Positives = 332/540 (61%), Gaps = 21/540 (3%)
Query: 30 YAISVSSS--LSYAQLLFNQIQNP-QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR 86
Y +S+ S +SYA +F++I+ P WN+LIR +A+ + + A Y M ++ L
Sbjct: 59 YLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVE 118
Query: 87 PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
PDT T+ F +KA + + + +H VIRSG+ + V +L+ YA G + +A V
Sbjct: 119 PDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKV 178
Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
FD MPE+DLV+WNS+I+ + + EAL LY M + + DGFT+V LLS+CA +GAL
Sbjct: 179 FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGAL 238
Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
+G +H ++G +++ N L+D+YA+CG ++ A +F M ++ +SW S+IVG
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298
Query: 267 GVHGRGDEAISFFKQM-LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
V+G G EAI FK M G P ITF+G+L CSH G+V+EG EYF M Y ++P
Sbjct: 299 AVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEP 358
Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKN 383
I+H+GC+VDL RAG+++KA E I S P P V+WRTLLG+C +H + ++ E A
Sbjct: 359 RIEHFGCMVDLLARAGQVKKAYEYIK-SMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQ 417
Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
++QLE +GDYVLL+ +YA + V + RK + +G+K PG S +E+GN+VH+F++
Sbjct: 418 ILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLM 477
Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
DKSHP +D IY KL+E+ R + GY S V V E E + YHSEK+AIAF
Sbjct: 478 GDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEK--ENAVVYHSEKIAIAF 535
Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
L +TP+ + + +VKNLR S Y+R+++VRDR R+HHF++G CSC DYW
Sbjct: 536 MLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/530 (39%), Positives = 317/530 (59%), Gaps = 17/530 (3%)
Query: 36 SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
SS+SYA+ LF + P +NS+ R +++ +PL+ + +L + PD +TF
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGI-LPDNYTFPSL 135
Query: 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
LKAC KAL + ++LH ++ G + V V L+ Y +++AR VFD + E +
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCV 195
Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
V +N++I+ Y + + EAL L+ M+ + + + TL+ +LSSCA +G+L++G ++H+
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKY 255
Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
A + F + V V AL+DM+AKCG+LD A +F +MR +D +W++MIV Y HG+ +++
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKS 315
Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
+ F++M PD ITFLGLL CSH G VEEG +YF MVS++ + P IKHYG +VD
Sbjct: 316 MLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVD 375
Query: 336 LYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
L RAG LE A E I+ SP+ P+LWR LL +C H N+++ E + + +L+ + G
Sbjct: 376 LLSRAGNLEDAYEFIDKLPISPT-PMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGG 434
Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
DYV+L+ +YA K E V RK++K PG S IE+ N VH+F D
Sbjct: 435 DYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTK 494
Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
++R L+E++ K GY D S+V V + ++ E + YHSEKLAI FGL TP GT+
Sbjct: 495 LHRALDEMVKELKLSGYVPDTSMV-VHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTT 553
Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
+R+VKNLR S+ + R +++RD R+HHF DG CSCGD+W
Sbjct: 554 IRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 217/545 (39%), Positives = 324/545 (59%), Gaps = 32/545 (5%)
Query: 36 SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMASLSRPDTFTFTF 94
S ++YA +F+ I+N + WN+LIRA A +S +A Y ML S PD TF F
Sbjct: 97 SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPF 156
Query: 95 TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
LKAC + ++ +++H +++ G+ V V+ L+ Y + G ++ AR VFD MPER
Sbjct: 157 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 216
Query: 155 LVSWNSIISCYTQASFHLEALKLYERMR--FEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
LVSWNS+I + + AL+L+ M+ FE DG+T+ +LS+CA +G+L++G +
Sbjct: 217 LVSWNSMIDALVRFGEYDSALQLFREMQRSFEP---DGYTMQSVLSACAGLGSLSLGTWA 273
Query: 213 HRI---ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
H C++ V V N+L++MY KCG+L A VF M+KRD+ SWN+MI+G+ H
Sbjct: 274 HAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATH 333
Query: 270 GRGDEAISFFKQML--MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
GR +EA++FF +M+ P+S+TF+GLL C+H+G V +G +YF MMV Y ++P +
Sbjct: 334 GRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPAL 393
Query: 328 KHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSC-KIHRNVEIGEIAMKNLV 385
+HYGC+VDL RAG + +A++ V++ D V+WR+LL +C K +VE+ E +N++
Sbjct: 394 EHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNII 453
Query: 386 QLEAAS-------AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
+ + +G YVLL+ +YA V RKL+ +GI+ PG S IEI
Sbjct: 454 GTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGIS 513
Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
H+F D SHP IY++L+ I R + IGY D S + ++++ E S HSE+
Sbjct: 514 HEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSER 573
Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
LAIAFGL P T +RI KNLR S ++ ++IVRDRVR+HHF+DG CS
Sbjct: 574 LAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCS 633
Query: 547 CGDYW 551
C DYW
Sbjct: 634 CLDYW 638
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/525 (37%), Positives = 310/525 (59%), Gaps = 18/525 (3%)
Query: 42 QLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101
Q +F+++ +WNS+I+A+ + PL+AI + M ++ + +PD T +
Sbjct: 302 QKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRI-QPDCLTLISLASILSQ 360
Query: 102 VKALNKCQELHGFVIRSG-YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
+ + C+ + GF +R G + + + ++ YA G++++AR+VF+ +P D++SWN+
Sbjct: 361 LGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNT 420
Query: 161 IISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
IIS Y Q F EA+++Y M E ++ + T V +L +C+ GAL G+ LH +
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 480
Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
G V+V +L DMY KCG L+ A +F ++ + + + WN++I +G HG G++A+ F
Sbjct: 481 GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLF 540
Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
K+ML G PD ITF+ LL CSH GLV+EG F MM + Y + P +KHYGC+VD+YGR
Sbjct: 541 KEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGR 600
Query: 340 AGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
AG+LE AL+ I + S D +W LL +C++H NV++G+IA ++L ++E G +VLL
Sbjct: 601 AGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLL 660
Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
+ +YA EGV R + G++ TPGWS +E+ N+V F +++HP + +YR+L
Sbjct: 661 SNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYREL 720
Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
+ + K IGY D V +D E HSE+LAIAF L TP T++RI K
Sbjct: 721 TALQAKLKMIGYVPDHRFVL--QDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFK 778
Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
NLR S R++IVRD R+HHF++G+CSCGDYW
Sbjct: 779 NLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 120/398 (30%), Positives = 201/398 (50%), Gaps = 27/398 (6%)
Query: 37 SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
+++ A+ F+ IQN AWN +I + ++ + + I ++ +++S PD TF L
Sbjct: 101 NVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVL 160
Query: 97 KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
KAC V NK +H ++ G+ V V+ +L+ Y+ + AR +FD MP RD+
Sbjct: 161 KACRTVIDGNK---IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMG 217
Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
SWN++IS Y Q+ EAL L +R +D T+V LLS+C G N G+ +H +
Sbjct: 218 SWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYS 273
Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
+ G ++V N L+D+YA+ G L VF RM RD++SWNS+I Y ++ + AI
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333
Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-----IKHYG 331
S F++M ++ PD +T + L S G + V + L+ G I
Sbjct: 334 SLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRS-----VQGFTLRKGWFLEDITIGN 388
Query: 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE--- 388
+V +Y + G ++ A V N +D + W T++ S I M N+++ E
Sbjct: 389 AVVVMYAKLGLVDSARAVFNWLPNTDVISWNTII-SGYAQNGFASEAIEMYNIMEEEGEI 447
Query: 389 AASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGI 423
AA+ G +V + + AC++ +G+ +L+K NG+
Sbjct: 448 AANQGTWV--SVLPACSQAGALRQGMKLHGRLLK-NGL 482
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 146/313 (46%), Gaps = 18/313 (5%)
Query: 54 QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113
Q+ S+IR F+ S + LQ + + S D T + C +++ KC LH
Sbjct: 25 QSIGSVIREFSASANALQDCWKNGN---ESKEIDDVHTL---FRYCTNLQSA-KC--LHA 75
Query: 114 FVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
++ S + V +S L+ Y G + AR FD++ RD+ +WN +IS Y +A E
Sbjct: 76 RLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSE 135
Query: 174 ALKLYER-MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
++ + M + D T +L +C V N +H +A + GF+ VYV +L+
Sbjct: 136 VIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNK---IHCLALKFGFMWDVYVAASLI 192
Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
+Y++ + +A +F M RD+ SWN+MI GY G EA++ + DS+
Sbjct: 193 HLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSV 248
Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
T + LL C+ G GV H ++ L+ + L+DLY G+L +V +
Sbjct: 249 TVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDR 307
Query: 353 SSPSDPVLWRTLL 365
D + W +++
Sbjct: 308 MYVRDLISWNSII 320
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
+++V + LV++Y GN+ A F ++ RDV +WN MI GYG G E I F
Sbjct: 83 IQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSL 142
Query: 282 -MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
ML +G PD TF +L C V +G H + ++ + L+ LY R
Sbjct: 143 FMLSSGLTPDYRTFPSVLKACR---TVIDG-NKIHCLALKFGFMWDVYVAASLIHLYSRY 198
Query: 341 GKLEKALEVINTSSPSDPVLWRTLL-GSCK 369
+ A + + D W ++ G C+
Sbjct: 199 KAVGNARILFDEMPVRDMGSWNAMISGYCQ 228
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 220/572 (38%), Positives = 309/572 (54%), Gaps = 54/572 (9%)
Query: 29 SYAISVSSS--LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR 86
S+ IS +SS L YAQ++F+ P T WN +IR F+ S P +++ Y ML +S
Sbjct: 54 SFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPH 113
Query: 87 PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
+ +TF LKAC + A + ++H + + GYE V +L+ YA G + A +
Sbjct: 114 -NAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLL 172
Query: 147 FDNMPERDLVSWNSII-------------------------------SCYTQASFHLEAL 175
FD +PE D VSWNS+I S Y QA + EAL
Sbjct: 173 FDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEAL 232
Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
+L+ M+ DV D +L LS+CA +GAL G ++H + +G L+DMY
Sbjct: 233 QLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMY 292
Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
AKCG ++ A VF ++K+ V +W ++I GY HG G EAIS F +M G P+ ITF
Sbjct: 293 AKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFT 352
Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
+L CS+ GLVEEG F+ M YNLKP I+HYGC+VDL GRAG L++A I P
Sbjct: 353 AVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQ-EMP 411
Query: 356 SDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
P V+W LL +C+IH+N+E+GE + L+ ++ G YV A I+A K + A
Sbjct: 412 LKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAE 471
Query: 414 TRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK- 472
TR+L+K G+ PG S I + H+F+ D+SHP+ + I K + + + GY
Sbjct: 472 TRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPE 531
Query: 473 -DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
+E L+ + +D E HSEKLAI +GL T GT +RI+KNLR
Sbjct: 532 LEEMLLDL---VDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTK 588
Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S Y RD+++RDR R+HHFRDG CSCGDYW
Sbjct: 589 LISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 158/359 (44%), Gaps = 40/359 (11%)
Query: 95 TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR---GYAANGVIEAARSVFDNMP 151
T+ +R + +++H ++++G + T + ++ + A+ VFD
Sbjct: 17 TMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFD 76
Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
D WN +I ++ + +L LY+RM + +T LL +C+++ A
Sbjct: 77 RPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQ 136
Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
+H ++G+ VY N+L++ YA GN A +F R+ + D +SWNS+I GY G+
Sbjct: 137 IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196
Query: 272 GDEAISFFKQM----------LMAG-------------FH--------PDSITFLGLLCG 300
D A++ F++M +++G FH PD+++ L
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256
Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-LVDLYGRAGKLEKALEVINTSSPSDPV 359
C+ G +E+G ++ H +++ ++ GC L+D+Y + G++E+ALEV
Sbjct: 257 CAQLGALEQG-KWIHSYLNKTRIRMD-SVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314
Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
W L+ H + G A+ ++++ V+ T G+ KLI
Sbjct: 315 AWTALISGYAYHGH---GREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLI 370
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 213/544 (39%), Positives = 311/544 (57%), Gaps = 19/544 (3%)
Query: 26 LLNSYAIS-VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
L+ A+S + ++Y+ +F+Q NP N++IRAF+ S +P + + + S
Sbjct: 49 FLSRLALSLIPRDINYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSS 108
Query: 85 SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
+ + +F LK C + L ++HG + G+ ++ T LM Y+ A
Sbjct: 109 LPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDAC 168
Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL---DGFTLVCLLSSCA 201
VFD +P+RD VSWN + SCY + + L L+++M+ + G DG T + L +CA
Sbjct: 169 KVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACA 228
Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
++GAL+ G +H E G ++ + N LV MY++CG++D A+ VF MR+R+V+SW +
Sbjct: 229 NLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTA 288
Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS-R 320
+I G ++G G EAI F +ML G P+ T GLL CSH GLV EG+ +F M S
Sbjct: 289 LISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGE 348
Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEI 379
+ +KP + HYGC+VDL GRA L+KA +I + D +WRTLLG+C++H +VE+GE
Sbjct: 349 FKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGER 408
Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
+ +L++L+A AGDYVLL Y+ E V R L+K I T PG S IE+ VH
Sbjct: 409 VISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVH 468
Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
+F+VDD SHP + IY+ L EI + K GY E + SE+ + YHSEKL
Sbjct: 469 EFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVA-EITSELHNLESEEEKGYALRYHSEKL 527
Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
AIAFG+ TP GT++R+ KNLR S Y R +IVRDR R+HHF+ G CSC
Sbjct: 528 AIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSC 587
Query: 548 GDYW 551
D+W
Sbjct: 588 NDFW 591
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 210/560 (37%), Positives = 316/560 (56%), Gaps = 50/560 (8%)
Query: 38 LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
L YA +F+QIQNP +N LIR F+ P +A +Y ML + + PD TF F +K
Sbjct: 67 LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRI-WPDNITFPFLIK 125
Query: 98 ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
A ++ + ++ H ++R G++ R VV
Sbjct: 126 ASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVS 185
Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
T+++ GY G++E AR +FD MP R+L +W+ +I+ Y + + +A+ L+E M+ E V
Sbjct: 186 WTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGV 245
Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
+ +V ++SSCAH+GAL G + + ++ +G ALVDM+ +CG+++ A
Sbjct: 246 VANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIH 305
Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
VF + + D LSW+S+I G VHG +A+ +F QM+ GF P +TF +L CSH GL
Sbjct: 306 VFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGL 365
Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS--SPSDPVLWRTL 364
VE+G+E + M + ++P ++HYGC+VD+ GRAGKL +A I P+ P+L L
Sbjct: 366 VEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPIL-GAL 424
Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
LG+CKI++N E+ E L++++ +G YVLL+ IYAC + + R ++K +K
Sbjct: 425 LGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVK 484
Query: 425 TTPGWSWIEIGNQVHKFVV-DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
PGWS IEI +++KF + DD+ HP+ I RK EEI+ + + IGY +
Sbjct: 485 KPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDE 544
Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIV 531
E E S HSEKLAIA+G+ T GT++RIVKNLR S Y R+LIV
Sbjct: 545 EEK--ESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIV 602
Query: 532 RDRVRYHHFRDGLCSCGDYW 551
RDR R+HHFR+G+CSC DYW
Sbjct: 603 RDRNRFHHFRNGVCSCRDYW 622
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/540 (36%), Positives = 313/540 (57%), Gaps = 23/540 (4%)
Query: 33 SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD---- 88
S L A+ +F++I +W S+IR + + + L A+ + +L+ D
Sbjct: 122 STCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFL 181
Query: 89 -TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA--ANGVIEAARS 145
+ + AC RV A + +H FVI+ G++R V V L+ YA G + AR
Sbjct: 182 DSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARK 241
Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVG 204
+FD + ++D VS+NSI+S Y Q+ EA +++ R+ + + V + TL +L + +H G
Sbjct: 242 IFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSG 301
Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
AL +G +H MG + V VG +++DMY KCG +++A F RM+ ++V SW +MI
Sbjct: 302 ALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIA 361
Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
GYG+HG +A+ F M+ +G P+ ITF+ +L CSH GL EG +F+ M R+ ++
Sbjct: 362 GYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVE 421
Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
PG++HYGC+VDL GRAG L+KA ++I D ++W +LL +C+IH+NVE+ EI++
Sbjct: 422 PGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVAR 481
Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
L +L++++ G Y+LL+ IYA + V R R ++K+ G+ PG+S +E+ +VH F++
Sbjct: 482 LFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLI 541
Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
D+ HP + IY L E+ + GY + S +V E+ E + HSEKLAIAF
Sbjct: 542 GDEEHPQREKIYEFLAELNRKLLEAGYVSNTS--SVCHDVDEEEKEMTLRVHSEKLAIAF 599
Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
G+ T G+++ +VKNLR S R+ +VRD R+HHF+DG CSCGDYW
Sbjct: 600 GIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 167/338 (49%), Gaps = 12/338 (3%)
Query: 44 LFNQ-IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
LFN+ + +WNS+I A+S +A+ ++ M SL P +F +KAC +
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLY-PTRSSFPCAIKACSSL 89
Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
+ ++ H GY+ + VS+ L+ Y+ G +E AR VFD +P+R++VSW S+I
Sbjct: 90 FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149
Query: 163 SCYTQASFHLEALKLYERMRFED------VGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
Y L+A+ L++ + ++ + LD LV ++S+C+ V A + +H
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209
Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFC--VFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
+ GF V VGN L+D YAK G A +F ++ +D +S+NS++ Y G +E
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269
Query: 275 AISFFKQMLMAGFHP-DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
A F++++ ++IT +L SH G + G + H V R L+ + +
Sbjct: 270 AFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIG-KCIHDQVIRMGLEDDVIVGTSI 328
Query: 334 VDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
+D+Y + G++E A + + + W ++ +H
Sbjct: 329 IDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMH 366
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 122/249 (48%), Gaps = 2/249 (0%)
Query: 23 GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
G LL++YA ++ A+ +F+QI + ++NS++ +AQS +A + ++
Sbjct: 221 GNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKN 280
Query: 83 SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
+ + T + L A AL + +H VIR G E V+V T+++ Y G +E
Sbjct: 281 KVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVET 340
Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
AR FD M +++ SW ++I+ Y +AL+L+ M V + T V +L++C+H
Sbjct: 341 ARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSH 400
Query: 203 VGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWN 260
G G + + + G + +VD+ + G L A+ + RM+ K D + W+
Sbjct: 401 AGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWS 460
Query: 261 SMIVGYGVH 269
S++ +H
Sbjct: 461 SLLAACRIH 469
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/530 (37%), Positives = 317/530 (59%), Gaps = 17/530 (3%)
Query: 36 SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
+S++YA +F I +P T +N++IR + +S +A+ +YN M M + PD FT+
Sbjct: 80 NSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEM-MQRGNEPDNFTYPCL 138
Query: 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
LKAC R+K++ + +++HG V + G E V V +L+ Y G +E + +VF+ + +
Sbjct: 139 LKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTA 198
Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
SW+S++S E L L+ M E ++ + +V L +CA+ GALN+G+ +H
Sbjct: 199 ASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHG 258
Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
++ V +LVDMY KCG LD A +F +M KR+ L++++MI G +HG G+
Sbjct: 259 FLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGES 318
Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
A+ F +M+ G PD + ++ +L CSH GLV+EG F M+ ++P +HYGCLV
Sbjct: 319 ALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLV 378
Query: 335 DLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
DL GRAG LE+ALE I + + V+WRT L C++ +N+E+G+IA + L++L + + G
Sbjct: 379 DLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPG 438
Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
DY+L++ +Y+ + + VARTR I G+K TPG+S +E+ + H+FV D+SHP
Sbjct: 439 DYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKE 498
Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
IY+ L ++ + KF GY+ D L + + E+ ++ HS+K+AIAFGL TP G+
Sbjct: 499 IYKMLHQMEWQLKFEGYSPD--LTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSI 556
Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
++I +NLR S+ Y R+++VRDR R+H F+ G CSC DYW
Sbjct: 557 IKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/564 (34%), Positives = 320/564 (56%), Gaps = 28/564 (4%)
Query: 11 GLNKARQAHEIHGEWLLNSYAISVSSSL----------SYAQLLFNQIQNPQTQAWNSLI 60
GL+ ++Q H +H + N VS++L A++LF + N AWN+++
Sbjct: 432 GLSLSKQVH-VHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMM 489
Query: 61 RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
+ QS + + + ++ R D FT K C + A+N+ +++H + I+SGY
Sbjct: 490 AGYTQSHDGHKTLKLFA-LMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGY 548
Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
+ + VS+ ++ Y G + AA+ FD++P D V+W ++IS + A ++ +
Sbjct: 549 DLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQ 608
Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
MR V D FT+ L + + + AL G +H A ++ +VG +LVDMYAKCG+
Sbjct: 609 MRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGS 668
Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
+D A+C+F R+ ++ +WN+M+VG HG G E + FKQM G PD +TF+G+L
Sbjct: 669 IDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSA 728
Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPV 359
CSH GLV E ++ M Y +KP I+HY CL D GRAG +++A +I + S +
Sbjct: 729 CSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASAS 788
Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
++RTLL +C++ + E G+ L++LE + YVLL+ +YA + + R ++K
Sbjct: 789 MYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMK 848
Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
+ +K PG+SWIE+ N++H FVVDD+S+ ++IYRK+++++ K GY + V
Sbjct: 849 GHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLV 908
Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
E E++ YHSEKLA+AFGL +TP T +R++KNLR + Y+R
Sbjct: 909 DVEEEEK--ERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNR 966
Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
++++RD R+H F+DG+CSCGDYW
Sbjct: 967 EIVLRDANRFHRFKDGICSCGDYW 990
Score = 132 bits (332), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 159/327 (48%), Gaps = 4/327 (1%)
Query: 40 YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
+A+ +F+ + +WNS+I AQ+ ++A+ + +L L +PD +T T LKA
Sbjct: 368 FARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGL-KPDQYTMTSVLKAA 426
Query: 100 ERV-KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
+ + L+ +++H I+ VST L+ Y+ N ++ A +F+ DLV+W
Sbjct: 427 SSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAW 485
Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218
N++++ YTQ+ + LKL+ M + D FTL + +C + A+N G +H A +
Sbjct: 486 NAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIK 545
Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
G+ ++V + ++DMY KCG++ +A F + D ++W +MI G +G + A
Sbjct: 546 SGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHV 605
Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
F QM + G PD T L S +E+G + H + N LVD+Y
Sbjct: 606 FSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ-IHANALKLNCTNDPFVGTSLVDMYA 664
Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL 365
+ G ++ A + + W +L
Sbjct: 665 KCGSIDDAYCLFKRIEMMNITAWNAML 691
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 140/293 (47%), Gaps = 10/293 (3%)
Query: 88 DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
D TF L +V +L Q++H ++ G + + VS +L+ Y AR+VF
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373
Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG-AL 206
DNM ERDL+SWNS+I+ Q +EA+ L+ ++ + D +T+ +L + + + L
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGL 433
Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
++ +H A ++ V +V AL+D Y++ + A +F R D+++WN+M+ GY
Sbjct: 434 SLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGY 492
Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKP 325
G + + F M G D T + C + +G + + + + S Y+L
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552
Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378
+ ++D+Y + G + A ++ D V W T++ C +E GE
Sbjct: 553 WVS--SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGC-----IENGE 598
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 7/195 (3%)
Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
L KC ER ++ NL+ Y+ G + AR VFD MP+RDLVSWNSI++
Sbjct: 57 LGKCTHARILTFEENPERFLI--NNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114
Query: 165 YTQASFHL-----EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
Y Q+S + +A L+ +R + V TL +L C H G + H AC++
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKI 174
Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
G +V ALV++Y K G + +F M RDV+ WN M+ Y G +EAI
Sbjct: 175 GLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 234
Query: 280 KQMLMAGFHPDSITF 294
+G +P+ IT
Sbjct: 235 SAFHSSGLNPNEITL 249
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 7/216 (3%)
Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
+++ N +S Y + + LK + M DV D T + +L++ V +L +G +H
Sbjct: 279 EIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVH 338
Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
+A ++G + V N+L++MY K A VF M +RD++SWNS+I G +G
Sbjct: 339 CMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEV 398
Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV---EYFHMMVSRYNLKPGIKHY 330
EA+ F Q+L G PD T +L S + EG+ + H+ + N
Sbjct: 399 EAVCLFMQLLRCGLKPDQYTMTSVLKAASS---LPEGLSLSKQVHVHAIKINNVSDSFVS 455
Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
L+D Y R +++A E++ D V W ++
Sbjct: 456 TALIDAYSRNRCMKEA-EILFERHNFDLVAWNAMMA 490
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/431 (19%), Positives = 171/431 (39%), Gaps = 46/431 (10%)
Query: 1 MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
+G HAR + + + I+ L++ Y S SL+YA+ +F+++ + +WNS++
Sbjct: 57 LGKCTHARILTFEENPERFLINN--LISMY--SKCGSLTYARRVFDKMPDRDLVSWNSIL 112
Query: 61 RAFAQS----LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
A+AQS + +Q F +L + T + LK C + + HG+
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYAC 172
Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
+ G + V+ L+ Y G ++ + +F+ MP RD+V WN ++ Y + F EA+
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 232
Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
LSS H LN R+ + +S V +A
Sbjct: 233 --------------------LSSAFHSSGLNPNEITLRLLARISGDDS---DAGQVKSFA 269
Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
+ S +++ N + Y G+ + F M+ + D +TF+
Sbjct: 270 NGNDASSV---------SEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFIL 320
Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
+L + G + H M + L + L+++Y + K A V + S
Sbjct: 321 MLATAVKVDSLALG-QQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSER 379
Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
D + W +++ +E+ + + + Y + + + A + EG++ +++
Sbjct: 380 DLISWNSVIAGIA-QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQ 438
Query: 417 L----IKSNGI 423
+ IK N +
Sbjct: 439 VHVHAIKINNV 449
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/523 (37%), Positives = 299/523 (57%), Gaps = 23/523 (4%)
Query: 44 LFNQIQNPQTQAWNSLIRAF-AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102
LF + + P A+N++I + + + L + ML + R T +
Sbjct: 278 LFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSG---- 333
Query: 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
L +HG+ ++S + VST L Y+ IE+AR +FD PE+ L SWN++I
Sbjct: 334 -HLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMI 392
Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
S YTQ +A+ L+ M+ + + T+ C+LS+CA +GAL++G ++H + F
Sbjct: 393 SGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFE 452
Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
S+YV AL+ MYAKCG++ A +F M K++ ++WN+MI GYG+HG+G EA++ F +M
Sbjct: 453 SSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEM 512
Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
L +G P +TFL +L CSH GLV+EG E F+ M+ RY +P +KHY C+VD+ GRAG
Sbjct: 513 LNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGH 572
Query: 343 LEKALEVINTSS--PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
L++AL+ I S P V W TLLG+C+IH++ + + L +L+ + G +VLL+
Sbjct: 573 LQRALQFIEAMSIEPGSSV-WETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSN 631
Query: 401 IYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE 460
I++ ++ A R+ K + PG++ IEIG H F D+SHP IY KLE+
Sbjct: 632 IHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEK 691
Query: 461 IMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
+ + + GY + E+ +A+ E+ E HSE+LAIAFGL T GT +RI+KNL
Sbjct: 692 LEGKMREAGY-QPETELALHDVEEEE-RELMVKVHSERLAIAFGLIATEPGTEIRIIKNL 749
Query: 521 R------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
R S R ++VRD R+HHF+DG+CSCGDYW
Sbjct: 750 RVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 169/330 (51%), Gaps = 5/330 (1%)
Query: 37 SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
++ YA+ +F +Q P +N L+R F+ + SP ++ + H+ ++ +P++ T+ F +
Sbjct: 67 AIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAI 126
Query: 97 KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
A + + +HG + G + +++ +N+++ Y +E AR VFD MPE+D +
Sbjct: 127 SAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTI 186
Query: 157 SWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
WN++IS Y + ++E+++++ + E LD TL+ +L + A + L +G+ +H +
Sbjct: 187 LWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSL 246
Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
A + G YV + +Y+KCG + +F RK D++++N+MI GY +G + +
Sbjct: 247 ATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELS 306
Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
+S FK+++++G S T + L+ H L+ H + N L
Sbjct: 307 LSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYA----IHGYCLKSNFLSHASVSTALTT 362
Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
+Y + ++E A ++ + S W ++
Sbjct: 363 VYSKLNEIESARKLFDESPEKSLPSWNAMI 392
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 219/593 (36%), Positives = 322/593 (54%), Gaps = 67/593 (11%)
Query: 6 HARYVGLN-KARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFA 64
H RY LN K +A+ HG+ + ++ LF+Q +P + + I +
Sbjct: 60 HPRYPVLNLKLHRAYASHGK-------------IRHSLALFHQTIDPDLFLFTAAINTAS 106
Query: 65 QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY---- 120
+ QA Y +L + ++ P+ FTF+ LK+C + + +H V++ G
Sbjct: 107 INGLKDQAFLLYVQLLSSEIN-PNEFTFSSLLKSC----STKSGKLIHTHVLKFGLGIDP 161
Query: 121 ---------------------------ERCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
ER +V ST ++ YA G +EAAR++FD+M ER
Sbjct: 162 YVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCER 221
Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFL 212
D+VSWN +I Y Q F +AL L++++ E D T+V LS+C+ +GAL G ++
Sbjct: 222 DIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWI 281
Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
H +V V L+DMY+KCG+L+ A VF+ ++D+++WN+MI GY +HG
Sbjct: 282 HVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYS 341
Query: 273 DEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
+A+ F +M + G P ITF+G L C+H GLV EG+ F M Y +KP I+HYG
Sbjct: 342 QDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYG 401
Query: 332 CLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
CLV L GRAG+L++A E I N + +D VLW ++LGSCK+H + +G+ + L+ L
Sbjct: 402 CLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIK 461
Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
++G YVLL+ IYA D EGVA+ R L+K GI PG S IEI N+VH+F D+ H
Sbjct: 462 NSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSK 521
Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
+ IY L +I R K GY + + V +E E+S HSE+LAIA+GL +T
Sbjct: 522 SKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEK--EQSLQVHSERLAIAYGLISTKP 579
Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
G+ L+I KNLR S R +++RDR R+HHF DG CSCGD+W
Sbjct: 580 GSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 164/381 (43%), Gaps = 50/381 (13%)
Query: 89 TFTFTFTLKACERVKAL-NKCQ------ELHGFVIRSG---YERCVVVSTNLMRGYAANG 138
T T F L E++ L +K Q ++H ++R + R V++ L R YA++G
Sbjct: 19 TATARFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHG 78
Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
I + ++F + DL + + I+ + +A LY ++ ++ + FT LL
Sbjct: 79 KIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLK 138
Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR------ 252
SC + G +H + G YV LVD+YAK G++ SA VF RM
Sbjct: 139 SC----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVS 194
Query: 253 -------------------------KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG- 286
+RD++SWN MI GY HG ++A+ F+++L G
Sbjct: 195 STAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGK 254
Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346
PD IT + L CS G +E G + H+ V ++ +K L+D+Y + G LE+A
Sbjct: 255 PKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEA 313
Query: 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
+ V N + D V W ++ +H + + + D + T+ AC
Sbjct: 314 VLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAH 373
Query: 407 D---EEGVARTRKLIKSNGIK 424
EG+ + + GIK
Sbjct: 374 AGLVNEGIRIFESMGQEYGIK 394
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 202/567 (35%), Positives = 323/567 (56%), Gaps = 33/567 (5%)
Query: 14 KARQAHEIHGEWLLNSYAISVS------------SSLSYAQLLFNQIQNPQTQAWNSLIR 61
+ +Q ++H ++ Y S S +++Y LLF + P +NS+I+
Sbjct: 21 RVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIK 80
Query: 62 AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE 121
+ ++ PL + YY ML +++S P +TFT +K+C + AL + +H + SG+
Sbjct: 81 STSKLRLPLHCVAYYRRMLSSNVS-PSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFG 139
Query: 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181
V L+ Y+ G +E AR VFD MPE+ +V+WNS++S + Q EA++++ +M
Sbjct: 140 LDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQM 199
Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
R D T V LLS+CA GA+++G ++H+ G +V +G AL+++Y++CG++
Sbjct: 200 RESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDV 259
Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCG 300
A VF +M++ +V +W +MI YG HG G +A+ F +M G P+++TF+ +L
Sbjct: 260 GKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSA 319
Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN----TSSPS 356
C+H GLVEEG + M Y L PG++H+ C+VD+ GRAG L++A + I+ T +
Sbjct: 320 CAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKAT 379
Query: 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
P LW +LG+CK+HRN ++G K L+ LE + G +V+L+ IYA + + V+ R
Sbjct: 380 APALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRD 439
Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
+ N ++ G+S IE+ N+ + F + D+SH + IYR LE ++ R K IGY
Sbjct: 440 GMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSE- 498
Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIA 524
V E+ E + YHSEKLA+AFGL T D ++ IVKNLR SI
Sbjct: 499 -EVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIV 556
Query: 525 YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
+R + VRD++R+HHF++G CSC DYW
Sbjct: 557 SNRQITVRDKLRFHHFQNGSCSCLDYW 583
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/534 (37%), Positives = 307/534 (57%), Gaps = 29/534 (5%)
Query: 44 LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
+F+ + + + WN++I ++Q+ +A+ + M ++ ++ T + AC R
Sbjct: 360 VFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419
Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
A ++ + +HGFV++ G +R V LM Y+ G I+ A +F M +RDLV+WN++I+
Sbjct: 420 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMIT 479
Query: 164 CYTQASFHLEALKLYERMRFED-----------VGLDGFTLVCLLSSCAHVGALNMGIFL 212
Y + H +AL L +M+ + + + TL+ +L SCA + AL G +
Sbjct: 480 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 539
Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
H A + V VG+ALVDMYAKCG L + VF ++ +++V++WN +I+ YG+HG G
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599
Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
EAI + M++ G P+ +TF+ + CSH G+V+EG+ F++M Y ++P HY C
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659
Query: 333 LVDLYGRAGKLEKALEVINTSSPSD---PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
+VDL GRAG++++A +++N P D W +LLG+ +IH N+EIGEIA +NL+QLE
Sbjct: 660 VVDLLGRAGRIKEAYQLMNM-MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEP 718
Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
A YVLLA IY+ + R+ +K G++ PG SWIE G++VHKFV D SHP
Sbjct: 719 NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 778
Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
++ + LE + R + GY D S V + ED E HSEKLAIAFG+ T
Sbjct: 779 QSEKLSGYLETLWERMRKEGYVPDTSCVL--HNVEEDEKEILLCGHSEKLAIAFGILNTS 836
Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
GT +R+ KNLR S R++I+RD R+H F++G CSCGDYW
Sbjct: 837 PGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 157/327 (48%), Gaps = 8/327 (2%)
Query: 44 LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV- 102
+F++I +WNSLI + A+ + ML ++ P +FT + AC +
Sbjct: 155 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV-EPSSFTLVSVVTACSNLP 213
Query: 103 --KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
+ L +++H + +R G +++T L+ Y G + +++ + + RDLV+WN+
Sbjct: 214 MPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272
Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
++S Q LEAL+ M E V D FT+ +L +C+H+ L G LH A + G
Sbjct: 273 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332
Query: 221 FV-ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
+ E+ +VG+ALVDMY C + S VF M R + WN+MI GY + EA+ F
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392
Query: 280 KQM-LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
M AG +S T G++ C G E H V + L L+D+Y
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMYS 451
Query: 339 RAGKLEKALEVINTSSPSDPVLWRTLL 365
R GK++ A+ + D V W T++
Sbjct: 452 RLGKIDIAMRIFGKMEDRDLVTWNTMI 478
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 155/309 (50%), Gaps = 9/309 (2%)
Query: 34 VSSSLSYAQLLF-NQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
V+S++S A +F +Q ++P+ W L+R+ +S +A+ Y M++ + +PD + F
Sbjct: 44 VASAVSGAPSIFISQSRSPEW--WIDLLRSKVRSNLLREAVLTYVDMIVLGI-KPDNYAF 100
Query: 93 TFTLKACERVKALNKCQELHGFVIRSGYE-RCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
LKA ++ + +++H V + GY V V+ L+ Y G A VFD +
Sbjct: 101 PALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRIS 160
Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG---ALNM 208
ER+ VSWNS+IS AL+ + M E+V FTLV ++++C+++ L M
Sbjct: 161 ERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMM 220
Query: 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV 268
G +H G + S ++ N LV MY K G L S+ + RD+++WN+++
Sbjct: 221 GKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279
Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
+ + EA+ + ++M++ G PD T +L CSH ++ G E + +L
Sbjct: 280 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 339
Query: 329 HYGCLVDLY 337
LVD+Y
Sbjct: 340 VGSALVDMY 348
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 160/351 (45%), Gaps = 29/351 (8%)
Query: 80 LMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139
L + S P F F L R K H +++R+ T+ A+
Sbjct: 5 LAFTFSLPSIFPFPSQLLPFSRHK--------HPYLLRA-------TPTSATEDVAS--A 47
Query: 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
+ A S+F + R W ++ +++ EA+ Y M + D + LL +
Sbjct: 48 VSGAPSIFISQ-SRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKA 106
Query: 200 CAHVGALNMGIFLHRIACEMGF-VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
A + + +G +H + G+ V+SV V N LV++Y KCG+ + + VF R+ +R+ +S
Sbjct: 107 VADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS 166
Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
WNS+I + + A+ F+ ML P S T + ++ CS+ + EG+ V
Sbjct: 167 WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGL-MMGKQV 224
Query: 319 SRYNLKPGIKH---YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS-CKIHRNV 374
Y L+ G + LV +YG+ GKL + ++ + D V W T+L S C+ + +
Sbjct: 225 HAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLL 284
Query: 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
E E ++ +V LE ++ + + + AC+ E + RT K + + +K
Sbjct: 285 EALEY-LREMV-LEGVEPDEFTISSVLPACSHLE--MLRTGKELHAYALKN 331
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/529 (37%), Positives = 308/529 (58%), Gaps = 25/529 (4%)
Query: 38 LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
L+ A LF+Q+ +W ++I A+++ +A+ ML ++ RP+ +T++ L+
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNV-RPNVYTYSSVLR 170
Query: 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
+C ++ + LH +I+ G E V V + L+ +A G E A SVFD M D +
Sbjct: 171 SC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIV 227
Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
WNSII + Q S AL+L++RM+ + TL +L +C + L +G+ H
Sbjct: 228 WNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH--VH 285
Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
+ + + + + NALVDMY KCG+L+ A VF++M++RDV++W++MI G +G EA+
Sbjct: 286 IVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALK 345
Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
F++M +G P+ IT +G+L CSH GL+E+G YF M Y + P +HYGC++DL
Sbjct: 346 LFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLL 405
Query: 338 GRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
G+AGKL+ A++++N D V WRTLLG+C++ RN+ + E A K ++ L+ AG Y
Sbjct: 406 GKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYT 465
Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
LL+ IYA ++ + V R ++ GIK PG SWIE+ Q+H F++ D SHP + +
Sbjct: 466 LLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSK 525
Query: 457 KLEEIMHRAKFIGYTKDESLVA--VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
KL +++HR IGY + + V + G ED L +HSEKLA+AFGL T P +
Sbjct: 526 KLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLR----HHSEKLALAFGLMTLPIEKVI 581
Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
RI KNLR S R +++RD +RYHHF+DG CSCGDYW
Sbjct: 582 RIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 147/278 (52%), Gaps = 6/278 (2%)
Query: 88 DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
D+ T++ +K C +A+++ + + +G+ + + L+ Y ++ A +F
Sbjct: 60 DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLF 119
Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
D MP+R+++SW ++IS Y++ H +AL+L M ++V + +T +L SC + +
Sbjct: 120 DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVR 179
Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
M LH + G V+V +AL+D++AK G + A VF M D + WNS+I G+
Sbjct: 180 M---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFA 236
Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
+ R D A+ FK+M AGF + T +L C+ L+E G++ H+ + +Y+ +
Sbjct: 237 QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQA-HVHIVKYDQDLIL 295
Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
+ LVD+Y + G LE AL V N D + W T++
Sbjct: 296 NN--ALVDMYCKCGSLEDALRVFNQMKERDVITWSTMI 331
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 4/193 (2%)
Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
A+K + ++ + D T L+ C A++ G + R G +++ N L++
Sbjct: 45 AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104
Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
MY K L+ A +F +M +R+V+SW +MI Y +A+ ML P+ T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164
Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
+ +L C+ G+ + V H + + L+ + L+D++ + G+ E AL V +
Sbjct: 165 YSSVLRSCN--GMSD--VRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEM 220
Query: 354 SPSDPVLWRTLLG 366
D ++W +++G
Sbjct: 221 VTGDAIVWNSIIG 233
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/527 (37%), Positives = 309/527 (58%), Gaps = 20/527 (3%)
Query: 41 AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
AQ LF++I +WN++I +A++ + +A+ + M+ ++ RPD T + AC
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV-RPDESTMVTVVSACA 277
Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
+ ++ +++H ++ G+ + + L+ Y+ G +E A +F+ +P +D++SWN+
Sbjct: 278 QSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNT 337
Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE-- 218
+I YT + + EAL L++ M + T++ +L +CAH+GA+++G ++H +
Sbjct: 338 LIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 397
Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
G + + +L+DMYAKCG++++A VF+ + + + SWN+MI G+ +HGR D +
Sbjct: 398 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDL 457
Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
F +M G PD ITF+GLL CSH G+++ G F M Y + P ++HYGC++DL G
Sbjct: 458 FSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLG 517
Query: 339 RAG--KLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396
+G K + + + P D V+W +LL +CK+H NVE+GE +NL+++E + G YV
Sbjct: 518 HSGLFKEAEEMINMMEMEP-DGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYV 576
Query: 397 LLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYR 456
LL+ IYA VA+TR L+ G+K PG S IEI + VH+F++ DK HP IY
Sbjct: 577 LLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 636
Query: 457 KLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRI 516
LEE+ + G+ D S V E++ E + +HSEKLAIAFGL +T GT L I
Sbjct: 637 MLEEMEVLLEKAGFVPDTS--EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTI 694
Query: 517 VKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
VKNLR S Y R++I RDR R+HHFRDG+CSC DYW
Sbjct: 695 VKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/350 (33%), Positives = 195/350 (55%), Gaps = 39/350 (11%)
Query: 38 LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
L YA +F IQ P WN++ R A S P+ A+ Y M+ L P+++TF F LK
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGL-LPNSYTFPFVLK 142
Query: 98 ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
+C + KA + Q++HG V++ G + R VV
Sbjct: 143 SCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVS 202
Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
T L++GYA+ G IE A+ +FD +P +D+VSWN++IS Y + + EAL+L++ M +V
Sbjct: 203 YTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV 262
Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
D T+V ++S+CA G++ +G +H + GF ++ + NAL+D+Y+KCG L++A
Sbjct: 263 RPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACG 322
Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
+F R+ +DV+SWN++I GY EA+ F++ML +G P+ +T L +L C+H G
Sbjct: 323 LFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 382
Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYG----CLVDLYGRAGKLEKALEVINT 352
++ G + H+ + + LK G+ + L+D+Y + G +E A +V N+
Sbjct: 383 IDIG-RWIHVYIDK-RLK-GVTNASSLRTSLIDMYAKCGDIEAAHQVFNS 429
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 156/376 (41%), Gaps = 39/376 (10%)
Query: 66 SLSPL--QAIFYYNHMLMASLSRP-DTFTFTFTLKACERVKALNKCQELHGFVIRSGYER 122
S SPL + Y H L +S P D+ +L K L + +H +I+ G
Sbjct: 4 SCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHN 63
Query: 123 CVVVSTNLMRGYAANGVIEA---ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
+ L+ + E A SVF + E +L+ WN++ + +S + ALKLY
Sbjct: 64 TNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYV 123
Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
M + + +T +L SCA A G +H ++G +YV +L+ MY + G
Sbjct: 124 CMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNG 183
Query: 240 NLDSAFCVFSRMRKR-------------------------------DVLSWNSMIVGYGV 268
L+ A VF + R DV+SWN+MI GY
Sbjct: 184 RLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAE 243
Query: 269 HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK 328
G EA+ FK M+ PD T + ++ C+ G +E G + H+ + + +K
Sbjct: 244 TGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLK 302
Query: 329 HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388
L+DLY + G+LE A + D + W TL+G H N+ + + +
Sbjct: 303 IVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGG-YTHMNLYKEALLLFQEMLRS 361
Query: 389 AASAGDYVLLATIYAC 404
+ D +L+ + AC
Sbjct: 362 GETPNDVTMLSILPAC 377
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/512 (37%), Positives = 299/512 (58%), Gaps = 22/512 (4%)
Query: 55 AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
+W ++I F Q+ +A+ ++ M + RP+ FT++ L A + E+H
Sbjct: 364 SWTAMISGFLQNDGKEEAVDLFSEMKRKGV-RPNEFTYSVILTALPVISP----SEVHAQ 418
Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
V+++ YER V T L+ Y G +E A VF + ++D+V+W+++++ Y Q A
Sbjct: 419 VVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAA 478
Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALVD 233
+K++ + + + FT +L+ CA A + G H A + S+ V +AL+
Sbjct: 479 IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538
Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
MYAK GN++SA VF R R++D++SWNSMI GY HG+ +A+ FK+M D +T
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVT 598
Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NT 352
F+G+ C+H GLVEEG +YF +MV + P +H C+VDLY RAG+LEKA++VI N
Sbjct: 599 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENM 658
Query: 353 SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
+P+ +WRT+L +C++H+ E+G +A + ++ ++ + YVLL+ +YA + D + A
Sbjct: 659 PNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERA 718
Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
+ RKL+ +K PG+SWIE+ N+ + F+ D+SHP D IY KLE++ R K +GY
Sbjct: 719 KVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEP 778
Query: 473 DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR----------- 521
D S V ++ E A HSE+LAIAFGL TP G+ L I+KNLR
Sbjct: 779 DTSYVL--QDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKL 836
Query: 522 -SIAYSRDLIVRDRVRYHHF-RDGLCSCGDYW 551
+ R+++VRD R+HHF DG+CSCGD+W
Sbjct: 837 IAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 159/345 (46%), Gaps = 9/345 (2%)
Query: 23 GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
G L+++Y S+ + +F++++ W +LI +A++ + + + M
Sbjct: 131 GTSLVDTYM--KGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNE 188
Query: 83 SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
++P++FTF L + ++H V+++G ++ + VS +L+ Y G +
Sbjct: 189 G-TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRK 247
Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
AR +FD + +V+WNS+IS Y LEAL ++ MR V L + ++ CA+
Sbjct: 248 ARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307
Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNS 261
+ L LH + GF+ + AL+ Y+KC + A +F + +V+SW +
Sbjct: 308 LKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTA 367
Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
MI G+ + +EA+ F +M G P+ T+ +L E H V +
Sbjct: 368 MISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE-----VHAQVVKT 422
Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
N + L+D Y + GK+E+A +V + D V W +L
Sbjct: 423 NYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 133/271 (49%), Gaps = 8/271 (2%)
Query: 6 HARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQ 65
HA+ V N R + G LL++Y + A +F+ I + AW++++ +AQ
Sbjct: 416 HAQVVKTNYERSS--TVGTALLDAYV--KLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQ 471
Query: 66 SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA-LNKCQELHGFVIRSGYERCV 124
+ AI + + + +P+ FTF+ L C A + + ++ HGF I+S + +
Sbjct: 472 TGETEAAIKMFGELTKGGI-KPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSL 530
Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
VS+ L+ YA G IE+A VF E+DLVSWNS+IS Y Q ++AL +++ M+
Sbjct: 531 CVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR 590
Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA-LVDMYAKCGNLDS 243
V +DG T + + ++C H G + G I + N+ +VD+Y++ G L+
Sbjct: 591 KVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 650
Query: 244 AFCVFSRM-RKRDVLSWNSMIVGYGVHGRGD 273
A V M W +++ VH + +
Sbjct: 651 AMKVIENMPNPAGSTIWRTILAACRVHKKTE 681
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 136/274 (49%), Gaps = 6/274 (2%)
Query: 33 SVSSSLSY-AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQA--IFYYNHMLMASLSRPDT 89
+VSSS Y A LF++ +++ SL+ F++ +A +F H L + D
Sbjct: 37 TVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEM---DC 93
Query: 90 FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
F+ LK + ++LH I+ G+ V V T+L+ Y + R VFD
Sbjct: 94 SIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153
Query: 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209
M ER++V+W ++IS Y + S + E L L+ RM+ E + FT L A G G
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213
Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
+ +H + + G +++ V N+L+++Y KCGN+ A +F + + V++WNSMI GY +
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 273
Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
G EA+ F M + +F ++ C++
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 113/233 (48%), Gaps = 1/233 (0%)
Query: 133 GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192
G ++ + A ++FD P RD S+ S++ +++ EA +L+ + + +D
Sbjct: 36 GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95
Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
+L A + G LH + GF++ V VG +LVD Y K N VF M+
Sbjct: 96 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMK 155
Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
+R+V++W ++I GY + DE ++ F +M G P+S TF L + +G+ G++
Sbjct: 156 ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215
Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
H +V + L I L++LY + G + KA + + + V W +++
Sbjct: 216 -VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 267
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/547 (35%), Positives = 322/547 (58%), Gaps = 19/547 (3%)
Query: 21 IHGEWLLNSYAISVSS--SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNH 78
++ E + N++ S + SLSYAQ +F+ I++ +WN+LI AQS P ++ +
Sbjct: 427 VYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQ 486
Query: 79 MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138
M ++ L PD+FT L AC ++K+L +E+HGF+IR+ ER + V +++ Y G
Sbjct: 487 MKISGL-LPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 545
Query: 139 VIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198
+ +++FD M ++ LVSWN++I+ Y Q F AL ++ +M + L G +++ +
Sbjct: 546 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 605
Query: 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS 258
+C+ + +L +G H A + + ++ +L+DMYAK G++ + VF+ ++++ S
Sbjct: 606 ACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS 665
Query: 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
WN+MI+GYG+HG EAI F++M G +PD +TFLG+L C+H GL+ EG+ Y M
Sbjct: 666 WNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMK 725
Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI--NTSSPSDPVLWRTLLGSCKIHRNVEI 376
S + LKP +KHY C++D+ GRAG+L+KAL V+ S +D +W++LL SC+IH+N+E+
Sbjct: 726 SSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEM 785
Query: 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436
GE L +LE +YVLL+ +YA E V + R+ + ++ G SWIE+
Sbjct: 786 GEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNR 845
Query: 437 QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHS 496
+V FVV ++ + I + + +GY D ++ S E+ +E+ HS
Sbjct: 846 KVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPD-TMSVQHDLSEEEKIEQLRG-HS 903
Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
EKLA+ +GL T +GT++R+ KNLR S R+++VRD R+HHF++G+
Sbjct: 904 EKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGV 963
Query: 545 CSCGDYW 551
CSCGDYW
Sbjct: 964 CSCGDYW 970
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 175/377 (46%), Gaps = 20/377 (5%)
Query: 1 MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
MG K H G + R ++ ++ YA+ S S + +F+ +++ WN++I
Sbjct: 102 MGRKIHQLVSGSTRLRN-DDVLCTRIITMYAMCGSPDDS--RFVFDALRSKNLFQWNAVI 158
Query: 61 RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
+++++ + + + M+ + PD FT+ +KAC + + +HG V+++G
Sbjct: 159 SSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGL 218
Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
V V L+ Y +G + A +FD MPER+LVSWNS+I ++ F E+ L
Sbjct: 219 VEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGE 278
Query: 181 MRFEDVGLDGF-----TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
M E+ G F TLV +L CA + +G +H A ++ + + + NAL+DMY
Sbjct: 279 M-MEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMY 337
Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG--FHPDSIT 293
+KCG + +A +F ++V+SWN+M+ G+ G +QML G D +T
Sbjct: 338 SKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVT 397
Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH----YGCLVDLYGRAGKLEKALEV 349
L + C H+ + ++ H Y+LK + V Y + G L A V
Sbjct: 398 ILNAVPVCFHESFL-PSLKELHC----YSLKQEFVYNELVANAFVASYAKCGSLSYAQRV 452
Query: 350 INTSSPSDPVLWRTLLG 366
+ W L+G
Sbjct: 453 FHGIRSKTVNSWNALIG 469
Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 97/433 (22%), Positives = 187/433 (43%), Gaps = 23/433 (5%)
Query: 8 RYVGLNKARQAHEIHG---------EWLLNSYAISVSSS---LSYAQLLFNQIQNPQTQA 55
R +GL K +HG E +LN+ + + S ++ AQ++F N +
Sbjct: 306 REIGLGKG-----VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVS 360
Query: 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLS-RPDTFTFTFTLKACERVKALNKCQELHGF 114
WN+++ F+ ML + D T + C L +ELH +
Sbjct: 361 WNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCY 420
Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
++ + +V+ + YA G + A+ VF + + + SWN++I + Q++ +
Sbjct: 421 SLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLS 480
Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
L + +M+ + D FT+ LLS+C+ + +L +G +H ++V +++ +
Sbjct: 481 LDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSL 540
Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
Y CG L + +F M + ++SWN++I GY +G D A+ F+QM++ G I+
Sbjct: 541 YIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISM 600
Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
+ + CS + G E H ++ L+ L+D+Y + G + ++ +V N
Sbjct: 601 MPVFGACSLLPSLRLGREA-HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK 659
Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGV 411
W ++ IH + I + +Q + D L + AC EG+
Sbjct: 660 EKSTASWNAMIMGYGIH-GLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGL 718
Query: 412 ARTRKLIKSNGIK 424
++ S G+K
Sbjct: 719 RYLDQMKSSFGLK 731
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/545 (36%), Positives = 306/545 (56%), Gaps = 21/545 (3%)
Query: 21 IHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80
+ G LLN YA SL A+ +F ++ W +LI ++Q P A+ ++N ML
Sbjct: 96 VMGNTLLNMYA--KCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQML 153
Query: 81 MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
S P+ FT + +KA + +LHGF ++ G++ V V + L+ Y G++
Sbjct: 154 RFGYS-PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLM 212
Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
+ A+ VFD + R+ VSWN++I+ + + S +AL+L++ M + F+ L +C
Sbjct: 213 DDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGAC 272
Query: 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260
+ G L G ++H + G + GN L+DMYAK G++ A +F R+ KRDV+SWN
Sbjct: 273 SSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWN 332
Query: 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320
S++ Y HG G EA+ +F++M G P+ I+FL +L CSH GL++EG Y+ +M +
Sbjct: 333 SLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELM-KK 391
Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGE 378
+ P HY +VDL GRAG L +AL I P +P +W+ LL +C++H+N E+G
Sbjct: 392 DGIVPEAWHYVTVVDLLGRAGDLNRALRFIE-EMPIEPTAAIWKALLNACRMHKNTELGA 450
Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
A +++ +L+ G +V+L IYA AR RK +K +G+K P SW+EI N +
Sbjct: 451 YAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAI 510
Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
H FV +D+ HP + I RK EE++ + K +GY D S V V E E + YHSEK
Sbjct: 511 HMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQER--EVNLQYHSEK 568
Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
+A+AF L TP G+++ I KN+R S R++IVRD R+HHF+DG CS
Sbjct: 569 IALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCS 628
Query: 547 CGDYW 551
C DYW
Sbjct: 629 CKDYW 633
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 146/288 (50%), Gaps = 9/288 (3%)
Query: 88 DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
D + LK C K L + + +H +++S + +V+ L+ YA G +E AR VF
Sbjct: 59 DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118
Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
+ MP+RD V+W ++IS Y+Q +AL + +M + FTL ++ + A
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178
Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
G LH + GF +V+VG+AL+D+Y + G +D A VF + R+ +SWN++I G+
Sbjct: 179 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 238
Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
++A+ F+ ML GF P ++ L CS G +E+G V Y +K G
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-----KWVHAYMIKSGE 293
Query: 328 KHYG----CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
K L+D+Y ++G + A ++ + + D V W +LL + H
Sbjct: 294 KLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 341
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/534 (37%), Positives = 311/534 (58%), Gaps = 29/534 (5%)
Query: 38 LSYAQLLFNQIQNPQTQ--AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
L A+ +F + P+ +W +++ A+AQ+ P++A+ ++ M + +PD
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDV-KPDWVALVSV 228
Query: 96 LKACERVKALNKCQELHGFVIRSGYE--RCVVVSTNLMRGYAANGVIEAARSVFDNMPER 153
L A ++ L + + +H V++ G E +++S N M YA G + A+ +FD M
Sbjct: 229 LNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM--YAKCGQVATAKILFDKMKSP 286
Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
+L+ WN++IS Y + + EA+ ++ M +DV D ++ +S+CA VG+L ++
Sbjct: 287 NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY 346
Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
+ + V++ +AL+DM+AKCG+++ A VF R RDV+ W++MIVGYG+HGR
Sbjct: 347 EYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAR 406
Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
EAIS ++ M G HP+ +TFLGLL C+H G+V EG +F+ M + + P +HY C+
Sbjct: 407 EAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACV 465
Query: 334 VDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
+DL GRAG L++A EVI P P +W LL +CK HR+VE+GE A + L ++ ++
Sbjct: 466 IDLLGRAGHLDQAYEVIKC-MPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN 524
Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
G YV L+ +YA + + VA R +K G+ G SW+E+ ++ F V DKSHP
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRY 584
Query: 452 DMIYRKLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
+ I R++E I R K G+ KD SL ++ +E+ L HSE++AIA+GL +TP
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL----CSHSERIAIAYGLISTP 640
Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
GT LRI KNLR S R+++VRD R+HHF+DG+CSCGDYW
Sbjct: 641 QGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 194/378 (51%), Gaps = 5/378 (1%)
Query: 30 YAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT 89
+A S +++A+ +F+ + PQ WN++IR ++++ A+ Y++M +A +S PD+
Sbjct: 61 HASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS-PDS 119
Query: 90 FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149
FTF LKAC + L + +H V R G++ V V L+ YA + +AR+VF+
Sbjct: 120 FTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEG 179
Query: 150 --MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
+PER +VSW +I+S Y Q +EAL+++ +MR DV D LV +L++ + L
Sbjct: 180 LPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLK 239
Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
G +H +MG + +L MYAKCG + +A +F +M+ +++ WN+MI GY
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299
Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
+G EAI F +M+ PD+I+ + C+ G +E+ + V R + + +
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYE-YVGRSDYRDDV 358
Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
L+D++ + G +E A V + + D V+W ++ +H I++ ++
Sbjct: 359 FISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREA-ISLYRAMER 417
Query: 388 EAASAGDYVLLATIYACT 405
D L + AC
Sbjct: 418 GGVHPNDVTFLGLLMACN 435
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 128/261 (49%), Gaps = 3/261 (1%)
Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
+ +++H ++ G + + T L+ ++ G I AR VFD++P + WN+II Y+
Sbjct: 36 QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95
Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
+ + +AL +Y M+ V D FT LL +C+ + L MG F+H +GF V+
Sbjct: 96 RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155
Query: 227 VGNALVDMYAKCGNLDSAFCVFS--RMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
V N L+ +YAKC L SA VF + +R ++SW +++ Y +G EA+ F QM
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215
Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
PD + + +L + +++G H V + L+ L +Y + G++
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQG-RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVA 274
Query: 345 KALEVINTSSPSDPVLWRTLL 365
A + + + +LW ++
Sbjct: 275 TAKILFDKMKSPNLILWNAMI 295
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/575 (35%), Positives = 314/575 (54%), Gaps = 62/575 (10%)
Query: 37 SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS--PLQAIFYYNHMLMASLSRPDTFTFTF 94
L YA +FNQ+ +WN++IR F++S L AI + M+ P+ FTF
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 95 TLKACERVKALNKCQELHGFVIRSGY--------------------------------ER 122
LKAC + + + +++HG ++ G+ E+
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 123 CVVVSTN-------------LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
+VV T+ ++ GY G +AAR +FD M +R +VSWN++IS Y+
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253
Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
F +A++++ M+ D+ + TLV +L + + +G+L +G +LH A + G +G+
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGS 313
Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
AL+DMY+KCG ++ A VF R+ + +V++W++MI G+ +HG+ +AI F +M AG P
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 373
Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE- 348
+ ++ LL CSH GLVEEG YF MVS L+P I+HYGC+VDL GR+G L++A E
Sbjct: 374 SDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEF 433
Query: 349 VINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408
++N D V+W+ LLG+C++ NVE+G+ L+ + +G YV L+ +YA +
Sbjct: 434 ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNW 493
Query: 409 EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFI 468
V+ R +K I+ PG S I+I +H+FVV+D SHP A I L EI + +
Sbjct: 494 SEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLA 553
Query: 469 GYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------- 521
GY + V + + E+ E YHSEK+A AFGL +T G +RIVKNLR
Sbjct: 554 GYRPITTQVLL--NLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHS 611
Query: 522 -----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S Y R + VRDR R+HHF+DG CSC DYW
Sbjct: 612 SIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/559 (36%), Positives = 311/559 (55%), Gaps = 47/559 (8%)
Query: 38 LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
L A +F I+ +WNS+I F Q SP +A+ + M + + T L
Sbjct: 182 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDV-KASHVTMVGVLS 240
Query: 98 ACERVKALNKCQELHGFV--------------IRSGYERC-----------------VVV 126
AC +++ L +++ ++ + Y +C V
Sbjct: 241 ACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 300
Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-D 185
T ++ GYA + EAAR V ++MP++D+V+WN++IS Y Q EAL ++ ++ + +
Sbjct: 301 WTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKN 360
Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245
+ L+ TLV LS+CA VGAL +G ++H + G + +V +AL+ MY+KCG+L+ +
Sbjct: 361 MKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSR 420
Query: 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305
VF+ + KRDV W++MI G +HG G+EA+ F +M A P+ +TF + C CSH G
Sbjct: 421 EVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 480
Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTL 364
LV+E FH M S Y + P KHY C+VD+ GR+G LEKA++ I P +W L
Sbjct: 481 LVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGAL 540
Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
LG+CKIH N+ + E+A L++LE + G +VLL+ IYA E V+ RK ++ G+K
Sbjct: 541 LGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLK 600
Query: 425 TTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSS 484
PG S IEI +H+F+ D +HP ++ +Y KL E+M + K GY + S V +
Sbjct: 601 KEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQV-LQIIEE 659
Query: 485 EDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------SIA------YSRDLIVR 532
E+ E+S HSEKLAI +GL +T +R++KNLR S+A Y R++IVR
Sbjct: 660 EEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVR 719
Query: 533 DRVRYHHFRDGLCSCGDYW 551
DR R+HHFR+G CSC D+W
Sbjct: 720 DRYRFHHFRNGQCSCNDFW 738
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 194/373 (52%), Gaps = 33/373 (8%)
Query: 31 AISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF 90
A+S +SL YA+ +F++I P + AWN+LIRA+A P+ +I+ + M+ S P+ +
Sbjct: 73 ALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKY 132
Query: 91 TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
TF F +KA V +L+ Q LHG ++S V V+ +L+ Y + G +++A VF +
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192
Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
E+D+VSWNS+I+ + Q +AL+L+++M EDV T+V +LS+CA + L G
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252
Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV-- 268
+ E ++ + NA++DMY KCG+++ A +F M ++D ++W +M+ GY +
Sbjct: 253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312
Query: 269 -----------------------------HGRGDEAISFFKQM-LMAGFHPDSITFLGLL 298
+G+ +EA+ F ++ L + IT + L
Sbjct: 313 DYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTL 372
Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
C+ G +E G + H + ++ ++ L+ +Y + G LEK+ EV N+ D
Sbjct: 373 SACAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDV 431
Query: 359 VLWRTLLGSCKIH 371
+W ++G +H
Sbjct: 432 FVWSAMIGGLAMH 444
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 149/291 (51%), Gaps = 6/291 (2%)
Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNL--MRGYAANGVIEAARSVFDNMPERDLVS 157
ER +L + ++ HG +IR+G ++ L M ++ +E AR VFD +P+ + +
Sbjct: 38 ERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFA 97
Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIA 216
WN++I Y + ++ + M E + +T L+ + A V +L++G LH +A
Sbjct: 98 WNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMA 157
Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
+ V+V N+L+ Y CG+LDSA VF+ ++++DV+SWNSMI G+ G D+A+
Sbjct: 158 VKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 217
Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF-HMMVSRYNLKPGIKHYGCLVD 335
FK+M +T +G+L C+ +E G + ++ +R N+ + + ++D
Sbjct: 218 ELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLAN--AMLD 275
Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
+Y + G +E A + + D V W T+L I + E + ++ Q
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 118/247 (47%), Gaps = 4/247 (1%)
Query: 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
+L+ YAIS A+ + N + AWN+LI A+ Q+ P +A+ ++ + +
Sbjct: 304 MLDGYAIS--EDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361
Query: 86 RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
+ + T TL AC +V AL + +H ++ + G V++ L+ Y+ G +E +R
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE 421
Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
VF+++ +RD+ W+++I EA+ ++ +M+ +V +G T + +C+H G
Sbjct: 422 VFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGL 481
Query: 206 LNMGIFL-HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WNSMI 263
++ L H++ G V +VD+ + G L+ A M S W +++
Sbjct: 482 VDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 541
Query: 264 VGYGVHG 270
+H
Sbjct: 542 GACKIHA 548
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/524 (36%), Positives = 304/524 (58%), Gaps = 34/524 (6%)
Query: 49 QNPQTQ----AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
+NPQ+ +N+LI + + A + + M +S D+ T + C +
Sbjct: 113 ENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSV-DSVTMLGLVPLCTVPEY 171
Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
L + LHG ++ G + V V + + Y G +EA R +FD MP + L++WN++IS
Sbjct: 172 LWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISG 231
Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
Y+Q + L+LYE+M+ V D FTLV +LSSCAH+GA +G + ++ GFV +
Sbjct: 232 YSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPN 291
Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
V+V NA + MYA+CGNL A VF M + ++SW +MI YG+HG G+ + F M+
Sbjct: 292 VFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIK 351
Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
G PD F+ +L CSH GL ++G+E F M Y L+PG +HY CLVDL GRAG+L+
Sbjct: 352 RGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLD 411
Query: 345 KALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
+A+E I S P +P +W LLG+CKIH+NV++ E+A +++ E + G YVL++ IY
Sbjct: 412 EAMEFIE-SMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIY 470
Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
+ +K++EG+ R R +++ + PG+S++E +VH F+ D+SH + ++R L+E+
Sbjct: 471 SDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDEL- 529
Query: 463 HRAKFIGYTKDESLVAVSGSSSEDFLEKSSAY---HSEKLAIAFGLATTPDGTSLRIVKN 519
+ S++ ++G+ D E+ S+ HSE+LAIAFG+ + GT + ++KN
Sbjct: 530 ----------ETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKN 579
Query: 520 LR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
LR S R +VRD R+H+F+DG+CSC DYW
Sbjct: 580 LRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/380 (27%), Positives = 180/380 (47%), Gaps = 8/380 (2%)
Query: 53 TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
+ WN +R A ++I Y ML + S PD F+F F LK+C + Q+LH
Sbjct: 18 STPWNVRLRELAYQSLFSESISLYRSMLRSG-SSPDAFSFPFILKSCASLSLPVSGQQLH 76
Query: 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS--WNSIISCYTQASF 170
V + G E V T L+ Y G++ AR VF+ P+ +S +N++IS YT S
Sbjct: 77 CHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSK 136
Query: 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNA 230
+A ++ RM+ V +D T++ L+ C L +G LH + G V V N+
Sbjct: 137 VTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNS 196
Query: 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD 290
+ MY KCG++++ +F M + +++WN++I GY +G + + ++QM +G PD
Sbjct: 197 FITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPD 256
Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
T + +L C+H G + G E ++ S P + + +Y R G L KA V
Sbjct: 257 PFTLVSVLSSCAHLGAKKIGHEVGKLVESN-GFVPNVFVSNASISMYARCGNLAKARAVF 315
Query: 351 NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD--- 407
+ V W ++G +H EIG + ++++ G V + + AC+
Sbjct: 316 DIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGA-VFVMVLSACSHSGLT 374
Query: 408 EEGVARTRKLIKSNGIKTTP 427
++G+ R + + ++ P
Sbjct: 375 DKGLELFRAMKREYKLEPGP 394
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/534 (38%), Positives = 301/534 (56%), Gaps = 22/534 (4%)
Query: 37 SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
S+ YA+ +F++ + WN+L RA + + + Y M + D FT+T+ L
Sbjct: 127 SVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE-SDRFTYTYVL 185
Query: 97 KACE----RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
KAC V L K +E+H + R GY V + T L+ YA G ++ A VF MP
Sbjct: 186 KACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPV 245
Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFE--DVGLDGFTLVCLLSSCAHVGALNMGI 210
R++VSW+++I+CY + EAL+ + M E D + T+V +L +CA + AL G
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGK 305
Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
+H G + V +ALV MY +CG L+ VF RM RDV+SWNS+I YGVHG
Sbjct: 306 LIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHG 365
Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
G +AI F++ML G P +TF+ +L CSH+GLVEEG F M + +KP I+HY
Sbjct: 366 YGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHY 425
Query: 331 GCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
C+VDL GRA +L++A +++ + + P +W +LLGSC+IH NVE+ E A + L LE
Sbjct: 426 ACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEP 485
Query: 390 ASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHP 449
+AG+YVLLA IYA + + V R +KL++ G++ PG W+E+ +++ FV D+ +P
Sbjct: 486 KNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNP 545
Query: 450 DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTP 509
+ I+ L ++ K GY V + E E+ HSEKLA+AFGL T
Sbjct: 546 LMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEK--ERIVLGHSEKLALAFGLINTS 603
Query: 510 DGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
G +RI KNLR S ++++VRD R+H F++G+CSCGDYW
Sbjct: 604 KGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 179/381 (46%), Gaps = 24/381 (6%)
Query: 57 NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
N LI++ + QAI +++ S P T+ + C +L+ +H ++
Sbjct: 50 NQLIQSLCKEGKLKQAI-----RVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHIL 104
Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
+G ++ ++T L+ Y+ G ++ AR VFD +R + WN++ T A E L
Sbjct: 105 DNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLG 164
Query: 177 LYERMRFEDVGLDGFTLVCLLSSCA----HVGALNMGIFLHRIACEMGFVESVYVGNALV 232
LY +M V D FT +L +C V L G +H G+ VY+ LV
Sbjct: 165 LYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLV 224
Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML--MAGFHPD 290
DMYA+ G +D A VF M R+V+SW++MI Y +G+ EA+ F++M+ P+
Sbjct: 225 DMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPN 284
Query: 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350
S+T + +L C+ +E+G + H + R L + LV +YGR GKLE V
Sbjct: 285 SVTMVSVLQACASLAALEQG-KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVF 343
Query: 351 NTSSPSDPVLWRTLLGSCKIH----RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
+ D V W +L+ S +H + ++I E + N AS ++ + AC+
Sbjct: 344 DRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLAN-----GASPTPVTFVSVLGACSH 398
Query: 407 D---EEGVARTRKLIKSNGIK 424
+ EEG + + +GIK
Sbjct: 399 EGLVEEGKRLFETMWRDHGIK 419
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/551 (37%), Positives = 309/551 (56%), Gaps = 35/551 (6%)
Query: 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA--- 82
LL AIS LS+A +F I P T WN++IR FA S P A +Y ML
Sbjct: 41 LLERCAISPFGDLSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSS 100
Query: 83 --SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
++ R D T +FTLKAC R + +LH + R G ++ T L+ Y+ NG +
Sbjct: 101 SSAICRVDALTCSFTLKACARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDL 160
Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200
+A +FD MP RD+ SWN++I+ + EA++LY+RM E + T+V L +C
Sbjct: 161 ISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGAC 220
Query: 201 AHVGALNMG--IFLHRIACEMGFV-ESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDV 256
+H+G + G IF G+ ++V V NA +DMY+KCG +D A+ VF + K+ V
Sbjct: 221 SHLGDVKEGENIF-------HGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSV 273
Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
++WN+MI G+ VHG A+ F ++ G PD +++L L C H GLVE G+ F+
Sbjct: 274 VTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNN 333
Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVE 375
M + ++ +KHYGC+VDL RAG+L +A ++I + S DPVLW++LLG+ +I+ +VE
Sbjct: 334 MACK-GVERNMKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVE 392
Query: 376 IGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIG 435
+ EIA + + ++ + GD+VLL+ +YA + V R R ++S +K PG S+IE
Sbjct: 393 MAEIASREIKEMGVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAK 452
Query: 436 NQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYH 495
+H+F DKSH IY K++EI + + GY LV E E + YH
Sbjct: 453 GTIHEFYNSDKSHEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEK--ENALCYH 510
Query: 496 SEKLAIAFGLAT---TPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHF 540
SEKLA+A+GL + + +R++ NLR S Y R++IVRDRVR+H F
Sbjct: 511 SEKLAVAYGLMMMDGADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRF 570
Query: 541 RDGLCSCGDYW 551
+DG CSC D+W
Sbjct: 571 KDGSCSCRDFW 581
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/533 (36%), Positives = 305/533 (57%), Gaps = 18/533 (3%)
Query: 33 SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92
S S L+ A LF++I + W +L + S +AI + M+ + +PD++
Sbjct: 157 SGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGV-KPDSYFI 215
Query: 93 TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE 152
L AC V L+ + + ++ ++ V T L+ YA G +E ARSVFD+M E
Sbjct: 216 VQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVE 275
Query: 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
+D+V+W+++I Y SF E ++L+ +M E++ D F++V LSSCA +GAL++G +
Sbjct: 276 KDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWG 335
Query: 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRG 272
+ F+ ++++ NAL+DMYAKCG + F VF M+++D++ N+ I G +G
Sbjct: 336 ISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHV 395
Query: 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332
+ + F Q G PD TFLGLLCGC H GL+++G+ +F+ + Y LK ++HYGC
Sbjct: 396 KLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGC 455
Query: 333 LVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
+VDL+GRAG L+ A +I P P ++W LL C++ ++ ++ E +K L+ LE
Sbjct: 456 MVDLWGRAGMLDDAYRLI-CDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPW 514
Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
+AG+YV L+ IY+ + A R ++ G+K PG+SWIE+ +VH+F+ DDKSHP
Sbjct: 515 NAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPL 574
Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
+D IY KLE++ + + +G+ V E E+ YHSEKLA+A GL +T
Sbjct: 575 SDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEK--ERVLGYHSEKLAVALGLISTDH 632
Query: 511 GTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
G +R+VKNLR S R+++VRD R+H F +G CSC DYW
Sbjct: 633 GQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
Score = 182 bits (461), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 169/325 (52%), Gaps = 10/325 (3%)
Query: 40 YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT----FTFTFT 95
Y+ LLF+ Q P +NSLI F + +F+ L S+ + FTF
Sbjct: 63 YSYLLFSHTQFPNIFLYNSLINGFVNN-----HLFHETLDLFLSIRKHGLYLHGFTFPLV 117
Query: 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
LKAC R + +LH V++ G+ V T+L+ Y+ +G + A +FD +P+R +
Sbjct: 118 LKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSV 177
Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
V+W ++ S YT + H EA+ L+++M V D + +V +LS+C HVG L+ G ++ +
Sbjct: 178 VTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKY 237
Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
EM ++ +V LV++YAKCG ++ A VF M ++D+++W++MI GY + E
Sbjct: 238 MEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEG 297
Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
I F QML PD + +G L C+ G ++ G E+ ++ R+ + L+D
Sbjct: 298 IELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALID 356
Query: 336 LYGRAGKLEKALEVINTSSPSDPVL 360
+Y + G + + EV D V+
Sbjct: 357 MYAKCGAMARGFEVFKEMKEKDIVI 381
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 363 bits (931), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/572 (34%), Positives = 317/572 (55%), Gaps = 49/572 (8%)
Query: 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
+ + A+S L YA + ++ + P A NS+IRA +S P ++ +Y +L +
Sbjct: 44 FVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGND 103
Query: 86 -RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA-- 142
+PD +T F ++AC ++ ++HG IR G++ V T L+ YA G +++
Sbjct: 104 LKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCH 163
Query: 143 -----------------------------ARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
AR +F+ MPERD ++WN++IS Y Q E
Sbjct: 164 KVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESRE 223
Query: 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233
AL ++ M+ E V ++G ++ +LS+C +GAL+ G + H +V + LVD
Sbjct: 224 ALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVD 283
Query: 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT 293
+YAKCG+++ A VF M +++V +W+S + G ++G G++ + F M G P+++T
Sbjct: 284 LYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343
Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
F+ +L GCS G V+EG +F M + + ++P ++HYGCLVDLY RAG+LE A+ +I
Sbjct: 344 FVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQ-Q 402
Query: 354 SPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
P P +W +LL + ++++N+E+G +A K +++LE A+ G YVLL+ IYA + D + V
Sbjct: 403 MPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNV 462
Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
+ R+ +KS G++ PG S +E+ +VH+F V DKSHP I ++I R + GY
Sbjct: 463 SHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYK 522
Query: 472 KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
D + V E E + HSEK AIAFG+ + + +RIVKNLR
Sbjct: 523 ADTTPVMFDIDEEEK--EDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSM 580
Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S ++R++IVRDR R+HHF+DG CSC +W
Sbjct: 581 MISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 363 bits (931), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 211/563 (37%), Positives = 315/563 (55%), Gaps = 55/563 (9%)
Query: 38 LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
L+ AQ F Q+ WNS+I F Q L+A+ ++ ML SL PD FT L
Sbjct: 230 LAMAQ--FEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLS 287
Query: 98 ACERVKALNKCQELHGFVIRSG--------------YERCVVVSTN-------------- 129
AC ++ L +++H ++ +G Y RC V T
Sbjct: 288 ACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKI 347
Query: 130 -----LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184
L+ GY G + A+++F ++ +RD+V+W ++I Y Q + EA+ L+ M
Sbjct: 348 EGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGG 407
Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
+ +TL +LS + + +L+ G +H A + G + SV V NAL+ MYAK GN+ SA
Sbjct: 408 GQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSA 467
Query: 245 FCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
F +R +RD +SW SMI+ HG +EA+ F+ MLM G PD IT++G+ C+H
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTH 527
Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
GLV +G +YF MM + P + HY C+VDL+GRAG L++A E I P +P V W
Sbjct: 528 AGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIE-KMPIEPDVVTW 586
Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY-ACTKDEEGVARTRKLIKS 420
+LL +C++H+N+++G++A + L+ LE ++G Y LA +Y AC K EE A+ RK +K
Sbjct: 587 GSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEA-AKIRKSMKD 645
Query: 421 NGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVS 480
+K G+SWIE+ ++VH F V+D +HP+ + IY +++I K +GY D + +V
Sbjct: 646 GRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTA--SVL 703
Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
E+ E+ +HSEKLAIAFGL +TPD T+LRI+KNLR S R+
Sbjct: 704 HDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGRE 763
Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
+IVRD R+HHF+DG CSC DYW
Sbjct: 764 IIVRDTTRFHHFKDGFCSCRDYW 786
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 166/398 (41%), Gaps = 68/398 (17%)
Query: 44 LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
F+Q+ + +W ++I + +AI M+ + P FT T L + +
Sbjct: 102 FFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGI-EPTQFTLTNVLASVAATR 160
Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW----- 158
+ +++H F+++ G V VS +L+ YA G A+ VFD M RD+ SW
Sbjct: 161 CMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIA 220
Query: 159 --------------------------NSIISCYTQASFHLEALKLYERM-RFEDVGLDGF 191
NS+IS + Q + L AL ++ +M R + D F
Sbjct: 221 LHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRF 280
Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC------------- 238
TL +LS+CA++ L +G +H GF S V NAL+ MY++C
Sbjct: 281 TLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQR 340
Query: 239 --------------------GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
G+++ A +F ++ RDV++W +MIVGY HG EAI+
Sbjct: 341 GTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINL 400
Query: 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338
F+ M+ G P+S T +L S + G + H + + L+ +Y
Sbjct: 401 FRSMVGGGQRPNSYTLAAMLSVASSLASLSHG-KQIHGSAVKSGEIYSVSVSNALITMYA 459
Query: 339 RAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVE 375
+AG + A + D V W +++ + H + E
Sbjct: 460 KAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAE 497
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 145/347 (41%), Gaps = 76/347 (21%)
Query: 84 LSRPDTFTFTFTLKACERV--KALNK------CQELHGFVIRSGYERCVVVSTNLMRGYA 135
+ P + + L+ C + K++NK Q +H VI+SG V + NLM Y+
Sbjct: 1 MDAPVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYS 60
Query: 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQ---------------------------- 167
G AR +FD MP R SWN+++S Y++
Sbjct: 61 KTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVG 120
Query: 168 ----ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
+H +A+++ M E + FTL +L+S A + G +H ++G
Sbjct: 121 YKNIGQYH-KAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRG 179
Query: 224 SVYVGNALVDMYAKCGN-------------------------------LDSAFCVFSRMR 252
+V V N+L++MYAKCG+ +D A F +M
Sbjct: 180 NVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMA 239
Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGV 311
+RD+++WNSMI G+ G A+ F +ML PD T +L C++ + G
Sbjct: 240 ERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGK 299
Query: 312 E-YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSD 357
+ + H++ + +++ + L+ +Y R G +E A +I D
Sbjct: 300 QIHSHIVTTGFDISGIV--LNALISMYSRCGGVETARRLIEQRGTKD 344
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 4/166 (2%)
Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
+ + + N ++ Y+K G++DS F ++ +RD +SW +MIVGY G+ +AI
Sbjct: 77 LRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGD 136
Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
M+ G P T +L + +E G + H + + L+ + L+++Y + G
Sbjct: 137 MVKEGIEPTQFTLTNVLASVAATRCMETG-KKVHSFIVKLGLRGNVSVSNSLLNMYAKCG 195
Query: 342 KLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387
A V + D W ++ +H V ++AM Q+
Sbjct: 196 DPMMAKFVFDRMVVRDISSWNAMIA---LHMQVGQMDLAMAQFEQM 238
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 360 bits (924), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 186/510 (36%), Positives = 289/510 (56%), Gaps = 16/510 (3%)
Query: 55 AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
+W ++I+ AQ+ +AI + M + L + D + F L AC + A+N+ +++H
Sbjct: 237 SWAAMIKGLAQNGLAKEAIECFREMKVQGL-KMDQYPFGSVLPACGGLGAINEGKQIHAC 295
Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
+IR+ ++ + V + L+ Y + A++VFD M ++++VSW +++ Y Q EA
Sbjct: 296 IIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEA 355
Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
+K++ M+ + D +TL +S+CA+V +L G H A G + V V N+LV +
Sbjct: 356 VKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTL 415
Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
Y KCG++D + +F+ M RD +SW +M+ Y GR E I F +M+ G PD +T
Sbjct: 416 YGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTL 475
Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
G++ CS GLVE+G YF +M S Y + P I HY C++DL+ R+G+LE+A+ IN
Sbjct: 476 TGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMP 535
Query: 355 -PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
P D + W TLL +C+ N+EIG+ A ++L++L+ Y LL++IYA + VA+
Sbjct: 536 FPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQ 595
Query: 414 TRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD 473
R+ ++ +K PG SWI+ ++H F DD+S P D IY KLEE+ ++ GY D
Sbjct: 596 LRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPD 655
Query: 474 ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------ 521
S V E K YHSE+LAIAFGL P G +R+ KNLR
Sbjct: 656 TSF--VHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHI 713
Query: 522 SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S R+++VRD VR+H F+DG CSCGD+W
Sbjct: 714 SSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 214/473 (45%), Gaps = 87/473 (18%)
Query: 13 NKARQAHEIHGE----------WLLNS--YAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
N++R IHG +L N+ +A ++ S +YA+ +F++I P +WN+L+
Sbjct: 20 NQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLL 79
Query: 61 RAFAQ-----------------------------SLSPL--QAIFYYNHMLMASLSRPDT 89
A+++ SLS L A+ YN M+ +
Sbjct: 80 LAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTR 139
Query: 90 FTFTFTLKACERVKALNKCQELHGFVIRSGYE---------------------------- 121
T LK ++ +++HG VI+ G+E
Sbjct: 140 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYG 199
Query: 122 ---RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178
R V+ +LM G A G+IE A +F M E+D VSW ++I Q EA++ +
Sbjct: 200 LDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECF 258
Query: 179 ERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238
M+ + + +D + +L +C +GA+N G +H F + +YVG+AL+DMY KC
Sbjct: 259 REMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKC 318
Query: 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
L A VF RM++++V+SW +M+VGYG GR +EA+ F M +G PD T +
Sbjct: 319 KCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAI 378
Query: 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY----GCLVDLYGRAGKLEKALEVINTSS 354
C++ +EEG ++ ++ G+ HY LV LYG+ G ++ + + N +
Sbjct: 379 SACANVSSLEEGSQFHGKAITS-----GLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMN 433
Query: 355 PSDPVLWRTLLGS-CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406
D V W ++ + + R VE ++ K +VQ G L I AC++
Sbjct: 434 VRDAVSWTAMVSAYAQFGRAVETIQLFDK-MVQHGLKPDG-VTLTGVISACSR 484
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 44 LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
LFN++ +W +++ A+AQ ++ I ++ M+ L +PD T T + AC R
Sbjct: 428 LFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGL-KPDGVTLTGVISACSRAG 486
Query: 104 ALNKCQEL-------HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP-ERDL 155
+ K Q +G V G+ C++ +L ++ +G +E A + MP D
Sbjct: 487 LVEKGQRYFKLMTSEYGIVPSIGHYSCMI---DL---FSRSGRLEEAMRFINGMPFPPDA 540
Query: 156 VSWNSIIS-CYTQASFHLEALKLYERMRFEDVGLDGFTLV 194
+ W +++S C + + + + + G+TL+
Sbjct: 541 IGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLL 580
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 356 bits (913), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 202/552 (36%), Positives = 300/552 (54%), Gaps = 49/552 (8%)
Query: 41 AQLLFNQIQNPQTQAWNSLIRAFAQS-----------LSPLQAIFYYNHMLMASLSRPDT 89
A+ F+ + +WN++I +AQS SP+Q +F + M+ +
Sbjct: 238 ARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQN--- 294
Query: 90 FTFTFTLKACERVKALNKCQELHGFVIRSGY---ER------------CVVVST--NLMR 132
+A E + + E+ + +GY ER C VST ++
Sbjct: 295 ---RMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMIT 351
Query: 133 GYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192
GYA G I A+++FD MP+RD VSW ++I+ Y+Q+ EAL+L+ +M E L+ +
Sbjct: 352 GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSS 411
Query: 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
LS+CA V AL +G LH + G+ +VGNAL+ MY KCG+++ A +F M
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 471
Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
+D++SWN+MI GY HG G+ A+ FF+ M G PD T + +L CSH GLV++G +
Sbjct: 472 GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531
Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIH 371
YF+ M Y + P +HY C+VDL GRAG LE A ++ N D +W TLLG+ ++H
Sbjct: 532 YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVH 591
Query: 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSW 431
N E+ E A + +E ++G YVLL+ +YA + V + R ++ G+K PG+SW
Sbjct: 592 GNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSW 651
Query: 432 IEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKS 491
IEI N+ H F V D+ HP+ D I+ LEE+ R K GY S+V E E+
Sbjct: 652 IEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEK--ERM 709
Query: 492 SAYHSEKLAIAFGLATTPDGTSLRIVKNLR-------SIAY-----SRDLIVRDRVRYHH 539
YHSE+LA+A+G+ G +R++KNLR +I Y R +I+RD R+HH
Sbjct: 710 VRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHH 769
Query: 540 FRDGLCSCGDYW 551
F+DG CSCGDYW
Sbjct: 770 FKDGSCSCGDYW 781
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 154/349 (44%), Gaps = 31/349 (8%)
Query: 23 GEWLLNSYAISVSSSL-----SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYN 77
G+ + + +++SS + + A +F ++ + ++N +I + ++ F
Sbjct: 60 GDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRN-----GEFELA 114
Query: 78 HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137
L + D ++ +K R + L K +EL + ER V ++ GYA N
Sbjct: 115 RKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMP----ERDVCSWNTMLSGYAQN 170
Query: 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197
G ++ ARSVFD MPE++ VSWN+++S Y Q S EA L++ E+ L + CLL
Sbjct: 171 GCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSR--ENWALVSWN--CLL 226
Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257
I R + V V N ++ YA+ G +D A +F +DV
Sbjct: 227 GGFVK----KKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVF 282
Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317
+W +M+ GY + +EA F +M + +++ +L G +E E F +M
Sbjct: 283 TWTAMVSGYIQNRMVEEARELFDKMP----ERNEVSWNAMLAGYVQGERMEMAKELFDVM 338
Query: 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
R + + ++ Y + GK+ +A + + DPV W ++
Sbjct: 339 PCR-----NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIA 382
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 352 bits (904), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 192/542 (35%), Positives = 316/542 (58%), Gaps = 24/542 (4%)
Query: 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
L+N+Y S + A+ +F+ + +WN++I + ++ +A+ + M
Sbjct: 102 LINAY--SKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFK 159
Query: 86 RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
+ FT + L AC +C++LH +++ + + V T L+ YA G+I+ A
Sbjct: 160 FSE-FTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQ 218
Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
VF++M ++ V+W+S+++ Y Q + EAL LY R + + + FTL ++ +C+++ A
Sbjct: 219 VFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAA 278
Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
L G +H + C+ GF +V+V ++ VDMYAKCG+L ++ +FS ++++++ WN++I G
Sbjct: 279 LIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISG 338
Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
+ H R E + F++M G HP+ +TF LL C H GLVEEG +F +M + Y L P
Sbjct: 339 FAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSP 398
Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKN 383
+ HY C+VD+ GRAG L +A E+I S P DP +W +LL SC++++N+E+ E+A +
Sbjct: 399 NVVHYSCMVDILGRAGLLSEAYELIK-SIPFDPTASIWGSLLASCRVYKNLELAEVAAEK 457
Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
L +LE +AG++VLL+ IYA K E +A++RKL++ +K G SWI+I ++VH F V
Sbjct: 458 LFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSV 517
Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGY--TKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
+ HP I L+ ++ + + GY + + L V E+ L + HSEKLA+
Sbjct: 518 GESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQ----HSEKLAL 573
Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
FGL P+ + +RI+KNLR S+A R +IVRD R+HHF DG CSCGD
Sbjct: 574 VFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGD 633
Query: 550 YW 551
+W
Sbjct: 634 FW 635
Score = 139 bits (350), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 140/277 (50%), Gaps = 3/277 (1%)
Query: 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
L+ C R A+ + + HG +IR E V + L+ Y+ G +E AR VFD M ER L
Sbjct: 68 LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSL 127
Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA-HVGALNMGIFLHR 214
VSWN++I YT+ EAL ++ MR E FT+ +LS+C + AL LH
Sbjct: 128 VSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKK-LHC 186
Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
++ + ++YVG AL+D+YAKCG + A VF M+ + ++W+SM+ GY + +E
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 246
Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
A+ +++ + T ++C CS+ + EG + H ++ + + V
Sbjct: 247 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG-KQMHAVICKSGFGSNVFVASSAV 305
Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
D+Y + G L ++ + + + LW T++ H
Sbjct: 306 DMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKH 342
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 6/212 (2%)
Query: 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255
+L CA GA+ H + V + N L++ Y+KCG ++ A VF M +R
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE--Y 313
++SWN+MI Y + EA+ F +M GF T +L C G+ + +E
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC---GVNCDALECKK 183
Query: 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRN 373
H + + + + L+DLY + G ++ A++V + V W +++ ++N
Sbjct: 184 LHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKN 243
Query: 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
E + + Q + + L + I AC+
Sbjct: 244 YEEALLLYRR-AQRMSLEQNQFTLSSVICACS 274
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 351 bits (900), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 195/567 (34%), Positives = 320/567 (56%), Gaps = 32/567 (5%)
Query: 13 NKARQAHEIHGEWLLNSYA------------ISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
+K +Q +IH L ++ + V + YA+ +F+++ P+ WN+L
Sbjct: 22 SKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLF 81
Query: 61 RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
+ + ++ P +++ Y M + RPD FT+ F +KA ++ + LH V++ G+
Sbjct: 82 KGYVRNQLPFESLLLYKKMRDLGV-RPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGF 140
Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
+V+T L+ Y G + +A +F++M +DLV+WN+ ++ Q AL+ + +
Sbjct: 141 GCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNK 200
Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
M + V D FT+V +LS+C +G+L +G ++ A + ++ V NA +DM+ KCGN
Sbjct: 201 MCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGN 260
Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
++A +F M++R+V+SW++MIVGY ++G EA++ F M G P+ +TFLG+L
Sbjct: 261 TEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSA 320
Query: 301 CSHQGLVEEGVEYFHMMV--SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358
CSH GLV EG YF +MV + NL+P +HY C+VDL GR+G LE+A E I P +P
Sbjct: 321 CSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIK-KMPVEP 379
Query: 359 V--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416
+W LLG+C +HR++ +G+ LV+ +VLL+ IYA + V + R
Sbjct: 380 DTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRS 439
Query: 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESL 476
++ G K +S +E ++H F DKSHP + IY KL+EI+ + + +GY D
Sbjct: 440 KMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCS 499
Query: 477 VAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLRSI----AYSR----- 527
V E E S ++HSEKLAIAFGL G +R++KNLR+ A+S+
Sbjct: 500 VFHDVEMEEK--ECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSL 557
Query: 528 ---DLIVRDRVRYHHFRDGLCSCGDYW 551
++I+RD+ R+HHFR+G+CSC ++W
Sbjct: 558 TSTEIIMRDKNRFHHFRNGVCSCKEFW 584
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 350 bits (897), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 191/529 (36%), Positives = 293/529 (55%), Gaps = 19/529 (3%)
Query: 37 SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
SL A+ LF+ + +WNS+I A+ Q+ +P +A+ + ML + +P + L
Sbjct: 286 SLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGV-KPTDVSVMGAL 344
Query: 97 KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
AC + L + + +H + G +R V V +L+ Y ++ A S+F + R LV
Sbjct: 345 HACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLV 404
Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
SWN++I + Q ++AL + +MR V D FT V ++++ A + + ++H +
Sbjct: 405 SWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVV 464
Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
++V+V ALVDMYAKCG + A +F M +R V +WN+MI GYG HG G A+
Sbjct: 465 MRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAAL 524
Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
F++M P+ +TFL ++ CSH GLVE G++ F+MM Y+++ + HYG +VDL
Sbjct: 525 ELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDL 584
Query: 337 YGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
GRAG+L +A + I P P ++ +LG+C+IH+NV E A + L +L G
Sbjct: 585 LGRAGRLNEAWDFI-MQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGY 643
Query: 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMI 454
+VLLA IY E V + R + G++ TPG S +EI N+VH F +HPD+ I
Sbjct: 644 HVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKI 703
Query: 455 YRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSL 514
Y LE+++ K GY D +LV D E+ + HSEKLAI+FGL T GT++
Sbjct: 704 YAFLEKLICHIKEAGYVPDTNLVL---GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTI 760
Query: 515 RIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
+ KNLR S+ R+++VRD R+HHF++G CSCGDYW
Sbjct: 761 HVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 209/404 (51%), Gaps = 19/404 (4%)
Query: 16 RQAHEIHGEWLLNSYAISVSS------------SLSYAQLLFNQIQNPQTQAWNSLIRAF 63
R EIHG + + +++ + + ++ A+ +F+++ +WN+++ +
Sbjct: 152 RVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGY 211
Query: 64 AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123
+Q+ A+ M +L +P T L A ++ ++ +E+HG+ +RSG++
Sbjct: 212 SQNGMARMALEMVKSMCEENL-KPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSL 270
Query: 124 VVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183
V +ST L+ YA G +E AR +FD M ER++VSWNS+I Y Q EA+ ++++M
Sbjct: 271 VNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD 330
Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
E V +++ L +CA +G L G F+H+++ E+G +V V N+L+ MY KC +D+
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDT 390
Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
A +F +++ R ++SWN+MI+G+ +GR +A+++F QM PD+ T++ ++ +
Sbjct: 391 AASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAE 450
Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRT 363
+ ++ H +V R L + LVD+Y + G + A + + S W
Sbjct: 451 LSITHHA-KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNA 509
Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYVLLATIYACT 405
++ H G+ A++ +++ + L+ I AC+
Sbjct: 510 MIDGYGTH---GFGKAALELFEEMQKGTIKPNGVTFLSVISACS 550
Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 170/329 (51%), Gaps = 2/329 (0%)
Query: 37 SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
S+ A +F I + ++++++ FA+ +A+ ++ M + P + FT+ L
Sbjct: 84 SVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDV-EPVVYNFTYLL 142
Query: 97 KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLV 156
K C L +E+HG +++SG+ + T L YA + AR VFD MPERDLV
Sbjct: 143 KVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLV 202
Query: 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
SWN+I++ Y+Q AL++ + M E++ T+V +L + + + +++G +H A
Sbjct: 203 SWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYA 262
Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
GF V + ALVDMYAKCG+L++A +F M +R+V+SWNSMI Y + EA+
Sbjct: 263 MRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAM 322
Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
F++ML G P ++ +G L C+ G +E G + H + L + L+ +
Sbjct: 323 LIFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISM 381
Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLL 365
Y + +++ A + V W ++
Sbjct: 382 YCKCKEVDTAASMFGKLQSRTLVSWNAMI 410
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 144/305 (47%), Gaps = 2/305 (0%)
Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWN 159
ER +L + +++ V ++G + T L+ + G ++ A VF+ + + V ++
Sbjct: 45 ERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYH 104
Query: 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
+++ + + S +AL+ + RMR++DV + LL C L +G +H + +
Sbjct: 105 TMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS 164
Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
GF ++ L +MYAKC ++ A VF RM +RD++SWN+++ GY +G A+
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMV 224
Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
K M P IT + +L S L+ G E H R + LVD+Y +
Sbjct: 225 KSMCEENLKPSFITIVSVLPAVSALRLISVGKE-IHGYAMRSGFDSLVNISTALVDMYAK 283
Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
G LE A ++ + + V W +++ + + N + + + ++ E D ++
Sbjct: 284 CGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD-EGVKPTDVSVMG 342
Query: 400 TIYAC 404
++AC
Sbjct: 343 ALHAC 347
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 186/522 (35%), Positives = 291/522 (55%), Gaps = 18/522 (3%)
Query: 44 LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
+F + ++N++I +AQS A+ M L +PD+FT + L
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDL-KPDSFTLSSVLPIFSEYV 256
Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
+ K +E+HG+VIR G + V + ++L+ YA + IE + VF + RD +SWNS+++
Sbjct: 257 DVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVA 316
Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
Y Q + EAL+L+ +M V ++ +CAH+ L++G LH GF
Sbjct: 317 GYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGS 376
Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
++++ +ALVDMY+KCGN+ +A +F RM D +SW ++I+G+ +HG G EA+S F++M
Sbjct: 377 NIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMK 436
Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
G P+ + F+ +L CSH GLV+E YF+ M Y L ++HY + DL GRAGKL
Sbjct: 437 RQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKL 496
Query: 344 EKALEVINT--SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
E+A I+ P+ V W TLL SC +H+N+E+ E + + +++ + G YVL+ +
Sbjct: 497 EEAYNFISKMCVEPTGSV-WSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNM 555
Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
YA + +A+ R ++ G++ P SWIE+ N+ H FV D+SHP D I L+ +
Sbjct: 556 YASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAV 615
Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
M + + GY D S V E+ + HSE+LA+AFG+ T GT++R+ KN+R
Sbjct: 616 MEQMEKEGYVADTS--GVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIR 673
Query: 522 ------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S R++IVRD R+HHF G CSCGDYW
Sbjct: 674 ICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 171/363 (47%), Gaps = 38/363 (10%)
Query: 45 FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
F +++P AW S+IR F +A+ + M AS PD F LK+C +
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEM-RASGRCPDHNVFPSVLKSCTMMMD 120
Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYA----------------------ANGV--- 139
L + +HGF++R G + + LM YA +N
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDED 180
Query: 140 -----------IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188
I++ R VF+ MP +D+VS+N+II+ Y Q+ + +AL++ M D+
Sbjct: 181 VKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKP 240
Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248
D FTL +L + + G +H G VY+G++LVDMYAK ++ + VF
Sbjct: 241 DSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300
Query: 249 SRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE 308
SR+ RD +SWNS++ GY +GR +EA+ F+QM+ A P ++ F ++ C+H +
Sbjct: 301 SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLH 360
Query: 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSC 368
G + H V R I LVD+Y + G ++ A ++ + + D V W ++
Sbjct: 361 LGKQ-LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGH 419
Query: 369 KIH 371
+H
Sbjct: 420 ALH 422
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 130/249 (52%), Gaps = 5/249 (2%)
Query: 23 GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
G L++ YA S+ + ++ +F+++ +WNSL+ + Q+ +A+ + M+ A
Sbjct: 280 GSSLVDMYA--KSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTA 337
Query: 83 SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
+ +P F+ + AC + L+ ++LHG+V+R G+ + +++ L+ Y+ G I+A
Sbjct: 338 KV-KPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKA 396
Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
AR +FD M D VSW +II + EA+ L+E M+ + V + V +L++C+H
Sbjct: 397 ARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSH 456
Query: 203 VGALNMGI-FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS-WN 260
VG ++ + + + G + + A+ D+ + G L+ A+ S+M S W+
Sbjct: 457 VGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWS 516
Query: 261 SMIVGYGVH 269
+++ VH
Sbjct: 517 TLLSSCSVH 525
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 131/311 (42%), Gaps = 46/311 (14%)
Query: 96 LKACERVKALNKCQELHGFVIR----SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
+K R+K+ ++ ++LH IR S +V+S Y ++ A +F +
Sbjct: 12 IKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISI-----YTNLKLLHEALLLFKTLK 66
Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
+++W S+I C+T S +AL + MR D +L SC + L G
Sbjct: 67 SPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGES 126
Query: 212 LHRIACEMGFVESVYVGNALVDMYAK---------CGN---------------------- 240
+H +G +Y GNAL++MYAK GN
Sbjct: 127 VHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETC 186
Query: 241 -----LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
+DS VF M ++DV+S+N++I GY G ++A+ ++M PDS T
Sbjct: 187 IMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 246
Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
+L S V +G E H V R + + LVD+Y ++ ++E + V +
Sbjct: 247 SVLPIFSEYVDVIKGKE-IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYC 305
Query: 356 SDPVLWRTLLG 366
D + W +L+
Sbjct: 306 RDGISWNSLVA 316
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 348 bits (893), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 206/563 (36%), Positives = 311/563 (55%), Gaps = 57/563 (10%)
Query: 40 YAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
YA+ + +Q W ++IR +A +AI Y M ++ P +FTF+ LKAC
Sbjct: 101 YARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEIT-PVSFTFSALLKAC 159
Query: 100 ERVKALNKCQELHGFVIR-SGY------------------------------ERCVVVST 128
+K LN ++ H R G+ ER V+ T
Sbjct: 160 GTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWT 219
Query: 129 NLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188
L+ YA G +E A +F+++P +D+V+W ++++ + Q + EAL+ ++RM +
Sbjct: 220 ELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRA 279
Query: 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES--VYVGNALVDMYAKCGNLDSAFC 246
D T+ +S+CA +GA +IA + G+ S V +G+AL+DMY+KCGN++ A
Sbjct: 280 DEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVN 339
Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQG 305
VF M ++V +++SMI+G HGR EA+ F M+ P+++TF+G L CSH G
Sbjct: 340 VFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSG 399
Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS--PSDPVLWRT 363
LV++G + F M + ++P HY C+VDL GR G+L++ALE+I T S P V W
Sbjct: 400 LVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGV-WGA 458
Query: 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423
LLG+C+IH N EI EIA ++L +LE G+Y+LL+ +YA D GV R RKLIK G+
Sbjct: 459 LLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGL 518
Query: 424 KTTPGWSWIEIGN-QVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA--VS 480
K TP SW+ N Q+HKF + +HP ++ I KLEE++ R +GY D S V VS
Sbjct: 519 KKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVS 578
Query: 481 GSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRD 528
++ L + H+EKLA+AF L TT +++ I+KNLR S +
Sbjct: 579 DNAKRLILIQ----HTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKV 634
Query: 529 LIVRDRVRYHHFRDGLCSCGDYW 551
+I+RD +R+HHFR G CSCGD+W
Sbjct: 635 IIMRDNMRFHHFRSGDCSCGDFW 657
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 34/279 (12%)
Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI--EAARSVFDNMPERDLVSWNSII 162
LN+ +++HG V+R G ++ + T L+R GV AR V + + R+ W ++I
Sbjct: 62 LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVI 121
Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
Y EA+ +Y MR E++ FT LL +C + LN+G H +
Sbjct: 122 RGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGF 181
Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS------------------------ 258
VYVGN ++DMY KC ++D A VF M +RDV+S
Sbjct: 182 CFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESL 241
Query: 259 -------WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
W +M+ G+ + + EA+ +F +M +G D +T G + C+ G +
Sbjct: 242 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYAD 301
Query: 312 EYFHM-MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
+ S Y+ + L+D+Y + G +E+A+ V
Sbjct: 302 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNV 340
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 47/320 (14%)
Query: 37 SLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96
++ A LF + AW +++ FAQ+ P +A+ Y++ M + + R D T +
Sbjct: 230 NMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI-RADEVTVAGYI 288
Query: 97 KACERVKALNKCQELHGFVIRSGYERC--VVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
AC ++ A +SGY VV+ + L+ Y+ G +E A +VF +M ++
Sbjct: 289 SACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKN 348
Query: 155 LVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLH 213
+ +++S+I EAL L+ M + ++ + T V L +C+H G ++ G
Sbjct: 349 VFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQG---- 404
Query: 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD 273
V+ DS + F RD + M+ G GR
Sbjct: 405 ---------RQVF---------------DSMYQTFGVQPTRD--HYTCMVDLLGRTGRLQ 438
Query: 274 EAISFFKQMLMAGFHPDSITFLGLLCGC---SHQGLVEEGVEYFHMMVSRYNLKPG-IKH 329
EA+ K M P + LL C ++ + E E+ + L+P I +
Sbjct: 439 EALELIKTM---SVEPHGGVWGALLGACRIHNNPEIAEIAAEHL------FELEPDIIGN 489
Query: 330 YGCLVDLYGRAGKLEKALEV 349
Y L ++Y AG L V
Sbjct: 490 YILLSNVYASAGDWGGVLRV 509
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 348 bits (892), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 189/566 (33%), Positives = 310/566 (54%), Gaps = 23/566 (4%)
Query: 1 MGLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI 60
+G + HA V +R A G +L+ Y S + ++LF+++ ++N +I
Sbjct: 268 LGQQLHALSVTTGFSRDASV--GNQILDFY--SKHDRVLETRMLFDEMPELDFVSYNVVI 323
Query: 61 RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGY 120
+++Q+ ++ ++ M R + F F L + +L ++LH + +
Sbjct: 324 SSYSQADQYEASLHFFREMQCMGFDRRN-FPFATMLSIAANLSSLQMGRQLHCQALLATA 382
Query: 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180
+ + V +L+ YA + E A +F ++P+R VSW ++IS Y Q H LKL+ +
Sbjct: 383 DSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTK 442
Query: 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240
MR ++ D T +L + A +L +G LH G +E+V+ G+ LVDMYAKCG+
Sbjct: 443 MRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGS 502
Query: 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300
+ A VF M R+ +SWN++I + +G G+ AI F +M+ +G PDS++ LG+L
Sbjct: 503 IKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTA 562
Query: 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP-- 358
CSH G VE+G EYF M Y + P KHY C++DL GR G+ +A ++++ P +P
Sbjct: 563 CSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMD-EMPFEPDE 621
Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA-ASAGDYVLLATIYACTKDEEGVARTRKL 417
++W ++L +C+IH+N + E A + L +E A YV ++ IYA + E V +K
Sbjct: 622 IMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKA 681
Query: 418 IKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV 477
++ GIK P +SW+E+ +++H F +D++HP+ D I RK+ E+ + GY D S
Sbjct: 682 MRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTS-- 739
Query: 478 AVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAY 525
+V E +S YHSE+LA+AF L +TP+G + ++KNLR S
Sbjct: 740 SVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIV 799
Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
R++ VRD R+HHF +G+CSCGDYW
Sbjct: 800 KREITVRDTSRFHHFSEGVCSCGDYW 825
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 158/336 (47%), Gaps = 8/336 (2%)
Query: 35 SSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS-LSRPDTFTFT 93
+ +S A+ LF+ + + W L+ +A++ +A + M +S + PD TFT
Sbjct: 92 TGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFT 151
Query: 94 FTLKACERVKALNKCQELHGFVIRSGYER--CVVVSTNLMRGYAANGVIEAARSVFDNMP 151
L C N ++H F ++ G++ + VS L++ Y ++ A +F+ +P
Sbjct: 152 TLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIP 211
Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
E+D V++N++I+ Y + + E++ L+ +MR FT +L + + +G
Sbjct: 212 EKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQ 271
Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
LH ++ GF VGN ++D Y+K + +F M + D +S+N +I Y +
Sbjct: 272 LHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQ 331
Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE-YFHMMVSRYNLKPGIKHY 330
+ ++ FF++M GF + F +L ++ ++ G + + +++ + I H
Sbjct: 332 YEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATAD---SILHV 388
Query: 331 G-CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
G LVD+Y + E+A + + V W L+
Sbjct: 389 GNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALI 424
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 5/179 (2%)
Query: 125 VVSTNLM-RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-R 182
VSTN M G+ G + +AR +FD MP+R +V+W ++ Y + S EA KL+ +M R
Sbjct: 79 TVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCR 138
Query: 183 FEDVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY--VGNALVDMYAKCG 239
L D T LL C N +H A ++GF + + V N L+ Y +
Sbjct: 139 SSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVR 198
Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298
LD A +F + ++D +++N++I GY G E+I F +M +G P TF G+L
Sbjct: 199 RLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVL 257
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 345 bits (885), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 207/564 (36%), Positives = 312/564 (55%), Gaps = 43/564 (7%)
Query: 28 NSYAISVS---SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
NS I +S S + A LF++I P T ++N ++ + ++++ +A +++ M
Sbjct: 96 NSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDA 155
Query: 85 SRPDTFTFTFTL-----KACERVKALNKCQELHGFVIRSGYERC---------------- 123
+ +T + KA E ++ + E+ + SGY C
Sbjct: 156 ASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVR 215
Query: 124 -VVVSTNLMRGYAANGVIEAARSVFDNMP-ERDLVSWNSIISCYTQASFHLEALKLYERM 181
VV T ++ GY +E A ++F +M ++LV+WN++IS Y + S + LKL+ M
Sbjct: 216 GVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAM 275
Query: 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241
E + + L L C+ + AL +G +H+I + V +L+ MY KCG L
Sbjct: 276 LEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGEL 335
Query: 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301
A+ +F M+K+DV++WN+MI GY HG D+A+ F++M+ PD ITF+ +L C
Sbjct: 336 GDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLAC 395
Query: 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--V 359
+H GLV G+ YF MV Y ++P HY C+VDL GRAGKLE+AL++I S P P
Sbjct: 396 NHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIR-SMPFRPHAA 454
Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419
++ TLLG+C++H+NVE+ E A + L+QL + +A YV LA IYA E VAR RK +K
Sbjct: 455 VFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMK 514
Query: 420 SNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479
+ + PG+SWIEI N+VH F D+ HP+ D I++KL+E+ + K GY K E A+
Sbjct: 515 ESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGY-KPELEFAL 573
Query: 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSR 527
E EK +HSEKLA+AFG P G+ +++ KNLR S R
Sbjct: 574 HNVEEEQ-KEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKR 632
Query: 528 DLIVRDRVRYHHFRDGLCSCGDYW 551
++IVRD R+HHF+DG CSCGDYW
Sbjct: 633 EIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 114/299 (38%), Gaps = 65/299 (21%)
Query: 137 NGVIEAARSVFDNMPERDLVSWNSI--------------------------------ISC 164
+G I+ A VF M ++ ++WNS+ +SC
Sbjct: 74 SGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSC 133
Query: 165 YTQASFHLEALKLYERMRFEDVG-----LDGF----------------------TLVCLL 197
Y + +A ++RM F+D + G+ + ++
Sbjct: 134 YVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMI 193
Query: 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDV 256
S G L ++A V V A++ Y K ++ A +F M +++
Sbjct: 194 SGYIECGDLEKASHFFKVAP----VRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNL 249
Query: 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316
++WN+MI GY + R ++ + F+ ML G P+S L GCS ++ G + H
Sbjct: 250 VTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQ-IHQ 308
Query: 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVE 375
+VS+ L + L+ +Y + G+L A ++ D V W ++ H N +
Sbjct: 309 IVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNAD 367
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 106/268 (39%), Gaps = 64/268 (23%)
Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG--------VHGRGDE 274
+ ++ N ++ + G++D A VF MR ++ ++WNS+++G H DE
Sbjct: 59 DQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDE 118
Query: 275 ------------------------AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310
A SFF +M D+ ++ ++ G + +G +E+
Sbjct: 119 IPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK----DAASWNTMITGYARRGEMEKA 174
Query: 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI 370
E F+ M+ + + + ++ Y G LEKA + V W ++
Sbjct: 175 RELFYSMMEKNEVS-----WNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMK 229
Query: 371 HRNVEIGEIAM------KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
+ VE+ E KNLV A +G YV ++ E+G+ R +++
Sbjct: 230 AKKVELAEAMFKDMTVNKNLVTWNAMISG-YV------ENSRPEDGLKLFRAMLEEGIRP 282
Query: 425 TTPG----------WSWIEIGNQVHKFV 442
+ G S +++G Q+H+ V
Sbjct: 283 NSSGLSSALLGCSELSALQLGRQIHQIV 310
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 342 bits (877), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 181/543 (33%), Positives = 303/543 (55%), Gaps = 17/543 (3%)
Query: 26 LLNSYA-ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMAS 83
L++ YA S S+ + +F+++++ +W +LI + ++ + +AI ++ M+
Sbjct: 308 LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQG 367
Query: 84 LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143
P+ FTF+ KAC + +++ G + G V+ +++ + + +E A
Sbjct: 368 HVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDA 427
Query: 144 RSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203
+ F+++ E++LVS+N+ + + +A KL + ++G+ FT LLS A+V
Sbjct: 428 QRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANV 487
Query: 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263
G++ G +H ++G + V NAL+ MY+KCG++D+A VF+ M R+V+SW SMI
Sbjct: 488 GSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMI 547
Query: 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
G+ HG + F QM+ G P+ +T++ +L CSH GLV EG +F+ M + +
Sbjct: 548 TGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKI 607
Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
KP ++HY C+VDL RAG L A E INT +D ++WRT LG+C++H N E+G++A +
Sbjct: 608 KPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAAR 667
Query: 383 NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFV 442
+++L+ Y+ L+ IYAC E R+ +K + G SWIE+G+++HKF
Sbjct: 668 KILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFY 727
Query: 443 VDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLV--AVSGSSSEDFLEKSSAYHSEKLA 500
V D +HP+A IY +L+ ++ K GY D LV + + E E+ HSEK+A
Sbjct: 728 VGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIA 787
Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
+AFGL +T +R+ KNLR S R++++RD R+HHF+DG CSC
Sbjct: 788 VAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCN 847
Query: 549 DYW 551
DYW
Sbjct: 848 DYW 850
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 151/323 (46%), Gaps = 12/323 (3%)
Query: 55 AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
+W++++ + + L AI + L L P+ + +T ++AC + + GF
Sbjct: 133 SWSAMMACYGNNGRELDAIKVFVEFLELGLV-PNDYCYTAVIRACSNSDFVGVGRVTLGF 191
Query: 115 VIRSG-YERCVVVSTNLMRGYA-ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
++++G +E V V +L+ + E A VFD M E ++V+W +I+ Q F
Sbjct: 192 LMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPR 251
Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
EA++ + M D FTL + S+CA + L++G LH A G V+ V +LV
Sbjct: 252 EAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLV 309
Query: 233 DMYAKC---GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH-GRGDEAISFFKQMLMAG-F 287
DMYAKC G++D VF RM V+SW ++I GY + EAI+ F +M+ G
Sbjct: 310 DMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHV 369
Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
P+ TF C + G + R L ++ ++ ++ ++E A
Sbjct: 370 EPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVISMFVKSDRMEDAQ 428
Query: 348 EVINTSSPSDPVLWRTLL-GSCK 369
+ S + V + T L G+C+
Sbjct: 429 RAFESLSEKNLVSYNTFLDGTCR 451
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 146/296 (49%), Gaps = 26/296 (8%)
Query: 86 RP-DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
RP D+ TF+ LK+C R + + +H +I E V+ +L+ Y+ +G A
Sbjct: 58 RPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAE 117
Query: 145 SVFDNMP---ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSS 199
VF+ M +RD+VSW+++++CY L+A+K++ + F ++GL + + ++ +
Sbjct: 118 DVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVF--VEFLELGLVPNDYCYTAVIRA 175
Query: 200 CAH-----VGALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKCGN-LDSAFCVFSRMR 252
C++ VG + +G + + G ES V VG +L+DM+ K N ++A+ VF +M
Sbjct: 176 CSNSDFVGVGRVTLGFLM-----KTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMS 230
Query: 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
+ +V++W MI G EAI FF M+++GF D T + C+ + G +
Sbjct: 231 ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG-K 289
Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRA---GKLEKALEVINTSSPSDPVLWRTLL 365
H R L ++ LVD+Y + G ++ +V + + W L+
Sbjct: 290 QLHSWAIRSGLVDDVE--CSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALI 343
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 6/186 (3%)
Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
+D T LL SC +G +H E + N+L+ +Y+K G+ A V
Sbjct: 60 MDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDV 119
Query: 248 FSRMR---KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
F MR KRDV+SW++M+ YG +GR +AI F + L G P+ + ++ CS+
Sbjct: 120 FETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNS 179
Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGC-LVDLYGRA-GKLEKALEVINTSSPSDPVLWR 362
V G ++ + + + GC L+D++ + E A +V + S + V W
Sbjct: 180 DFVGVGRVTLGFLMKTGHFESDV-CVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWT 238
Query: 363 TLLGSC 368
++ C
Sbjct: 239 LMITRC 244
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 339 bits (870), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 193/553 (34%), Positives = 297/553 (53%), Gaps = 21/553 (3%)
Query: 14 KARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAI 73
+ R+ + + L+N Y + L A+ +F+++ + + WN++I Q + +
Sbjct: 104 RMRKKNYMSSNILINGYV--RAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGL 161
Query: 74 FYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRG 133
+ M S PD +T +++++ Q++HG+ I+ G E +VV+++L
Sbjct: 162 SLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHM 220
Query: 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTL 193
Y NG ++ V +MP R+LV+WN++I Q L LY+ M+ + T
Sbjct: 221 YMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITF 280
Query: 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253
V +LSSC+ + G +H A ++G V V ++L+ MY+KCG L A FS
Sbjct: 281 VTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERED 340
Query: 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVE 312
D + W+SMI YG HG+GDEAI F M + + FL LL CSH GL ++G+E
Sbjct: 341 EDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLE 400
Query: 313 YFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP--SDPVLWRTLLGSCKI 370
F MMV +Y KPG+KHY C+VDL GRAG L++A E I S P +D V+W+TLL +C I
Sbjct: 401 LFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQA-EAIIRSMPIKTDIVIWKTLLSACNI 459
Query: 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWS 430
H+N E+ + K ++Q++ + YVLLA ++A K V+ RK ++ +K G S
Sbjct: 460 HKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGIS 519
Query: 431 WIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEK 490
W E +VH+F + D+S + IY L+E+ K GY D + +V E+ E
Sbjct: 520 WFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTA--SVLHDMDEEEKES 577
Query: 491 SSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYH 538
HSEKLA+AF L P+G +RI+KNLR S+ +R++ +RD R+H
Sbjct: 578 DLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFH 637
Query: 539 HFRDGLCSCGDYW 551
HF +G CSCGDYW
Sbjct: 638 HFINGKCSCGDYW 650
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 152/345 (44%), Gaps = 48/345 (13%)
Query: 88 DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA----------- 136
+T FT +++C ++L ++LH ++ SG+ + +LM Y+
Sbjct: 43 NTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVY 102
Query: 137 ---------------NGVIEA-----ARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
NG + A AR VFD MP+R L +WN++I+ Q F+ E L
Sbjct: 103 GRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLS 162
Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
L+ M D +TL + S A + ++++G +H + G + V ++L MY
Sbjct: 163 LFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYM 222
Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
+ G L V M R++++WN++I+G +G + + +K M ++G P+ ITF+
Sbjct: 223 RNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVT 282
Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
+L CS + +G + H + + L+ +Y + G L A + +
Sbjct: 283 VLSSCSDLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDE 341
Query: 357 DPVLWRTLLGSCKIH----------------RNVEIGEIAMKNLV 385
D V+W +++ + H N+EI E+A NL+
Sbjct: 342 DEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLL 386
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 90/221 (40%), Gaps = 36/221 (16%)
Query: 180 RMRFEDVGLDGFTLVCLLS----SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
R F+ L+ FT L + SC +L G LH + GF ++ N L+ MY
Sbjct: 30 REAFQRFRLNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMY 89
Query: 236 AKCGNLDSAFCVFSRMRKRDVLS-------------------------------WNSMIV 264
+K G+ SA V+ RMRK++ +S WN+MI
Sbjct: 90 SKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIA 149
Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
G +E +S F++M GF PD T + G + V G + H +Y L+
Sbjct: 150 GLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIG-QQIHGYTIKYGLE 208
Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
+ L +Y R GKL+ VI + + V W TL+
Sbjct: 209 LDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 249
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 339 bits (869), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 195/539 (36%), Positives = 294/539 (54%), Gaps = 36/539 (6%)
Query: 44 LFNQIQNPQTQ----AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99
LF ++Q + + W++ I +AQ +A+ ML + + +P+ T L C
Sbjct: 317 LFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI-KPNEVTLISVLSGC 375
Query: 100 ERVKALNKCQELHGFVIR-------SGYERCVVVSTNLMRGYAANGVIEAARSVFDNM-- 150
V AL +E+H + I+ +G+ +V L+ YA ++ AR++FD++
Sbjct: 376 ASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSP 435
Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL--DGFTLVCLLSSCAHVGALNM 208
ERD+V+W +I Y+Q +AL+L M ED + FT+ C L +CA + AL +
Sbjct: 436 KERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRI 495
Query: 209 GIFLHRIAC-EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
G +H A ++V N L+DMYAKCG++ A VF M ++ ++W S++ GYG
Sbjct: 496 GKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYG 555
Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
+HG G+EA+ F +M GF D +T L +L CSH G++++G+EYF+ M + + + PG
Sbjct: 556 MHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGP 615
Query: 328 KHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386
+HY CLVDL GRAG+L AL +I PV+W L C+IH VE+GE A + + +
Sbjct: 616 EHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITE 675
Query: 387 LEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
L + G Y LL+ +YA + V R R L++ G+K PG SW+E F V DK
Sbjct: 676 LASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDK 735
Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDE--SLVAVSGSSSEDFLEKSSAYHSEKLAIAFG 504
+HP A IY+ L + M R K IGY + +L V +D L + HSEKLA+A+G
Sbjct: 736 THPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFE----HSEKLALAYG 791
Query: 505 LATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
+ TTP G ++RI KNLR S D+I+RD R+HHF++G CSC YW
Sbjct: 792 ILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 175 bits (443), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 125/396 (31%), Positives = 192/396 (48%), Gaps = 57/396 (14%)
Query: 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQA----WNSLIRAFAQSLSPLQAIFYYNHMLM 81
L+++Y ISV LS+A L + P + A WNSLIR++ + + ++ + LM
Sbjct: 65 LISTY-ISVGC-LSHAVSLLRRF--PPSDAGVYHWNSLIRSYGDNGCANKCLYLFG--LM 118
Query: 82 ASLS-RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140
SLS PD +TF F KAC + ++ + H + +G+ V V L+ Y+ +
Sbjct: 119 HSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSL 178
Query: 141 EAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSS 199
AR VFD M D+VSWNSII Y + AL+++ RM E D TLV +L
Sbjct: 179 SDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPP 238
Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
CA +G ++G LH A +++++VGN LVDMYAKCG +D A VFS M +DV+SW
Sbjct: 239 CASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSW 298
Query: 260 NSMIVGYGVHGRGDEAISFF-----------------------------------KQMLM 284
N+M+ GY GR ++A+ F +QML
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358
Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG-------CLVDLY 337
+G P+ +T + +L GC+ G + G E H +Y + +G L+D+Y
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKE-IHCYAIKYPIDLRKNGHGDENMVINQLIDMY 417
Query: 338 GRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIH 371
+ K++ A + ++ SP D V W ++G H
Sbjct: 418 AKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQH 453
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 136/288 (47%), Gaps = 12/288 (4%)
Query: 83 SLSRPD-TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
S S P+ T F K +VK ++ Q+L F I + + ++++L+ Y + G +
Sbjct: 24 STSAPEITPPFIHKCKTISQVKLIH--QKLLSFGILT-----LNLTSHLISTYISVGCLS 76
Query: 142 AARSVFDNMPERD--LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
A S+ P D + WNS+I Y + L L+ M D +T + +
Sbjct: 77 HAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKA 136
Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
C + ++ G H ++ GF+ +V+VGNALV MY++C +L A VF M DV+SW
Sbjct: 137 CGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSW 196
Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMA-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318
NS+I Y G+ A+ F +M G PD+IT + +L C+ G G + H
Sbjct: 197 NSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQ-LHCFA 255
Query: 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366
+ + CLVD+Y + G +++A V + S D V W ++
Sbjct: 256 VTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVA 303
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 339 bits (869), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 186/532 (34%), Positives = 300/532 (56%), Gaps = 24/532 (4%)
Query: 38 LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
L A+ + +++ +W ++I ++Q+ +A+ + M M S +P+ FTF L
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEM-MRSDGKPNEFTFATVLT 161
Query: 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
+C R L +++HG +++ Y+ + V ++L+ YA G I+ AR +F+ +PERD+VS
Sbjct: 162 SCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVS 221
Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG--IFLHRI 215
+II+ Y Q EAL+++ R+ E + + T LL++ + + L+ G H +
Sbjct: 222 CTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVL 281
Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
E+ F + N+L+DMY+KCGNL A +F M +R +SWN+M+VGY HG G E
Sbjct: 282 RRELPFY--AVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREV 339
Query: 276 ISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS-RYNLKPGIKHYGCL 333
+ F+ M PD++T L +L GCSH + + G+ F MV+ Y KPG +HYGC+
Sbjct: 340 LELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCI 399
Query: 334 VDLYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391
VD+ GRAG++++A E I S P+ VL +LLG+C++H +V+IGE + L+++E +
Sbjct: 400 VDMLGRAGRIDEAFEFIKRMPSKPTAGVLG-SLLGACRVHLSVDIGESVGRRLIEIEPEN 458
Query: 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDA 451
AG+YV+L+ +YA V R ++ + PG SWI+ +H F +D++HP
Sbjct: 459 AGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRR 518
Query: 452 DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDG 511
+ + K++EI + K GY D S V E+ EK HSEKLA+ FGL T +G
Sbjct: 519 EEVLAKMKEISIKMKQAGYVPDLSCVLY--DVDEEQKEKMLLGHSEKLALTFGLIATGEG 576
Query: 512 TSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
+R+ KNLR S + R++ +RD+ R+H DG+CSCGDYW
Sbjct: 577 IPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
Score = 142 bits (357), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 153/312 (49%), Gaps = 5/312 (1%)
Query: 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
L AC +AL Q +H +I++ Y + T L+ Y +E AR V D MPE+++
Sbjct: 59 LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 118
Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
VSW ++IS Y+Q EAL ++ M D + FT +L+SC L +G +H +
Sbjct: 119 VSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGL 178
Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
+ + ++VG++L+DMYAK G + A +F + +RDV+S ++I GY G +EA
Sbjct: 179 IVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEA 238
Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
+ F ++ G P+ +T+ LL S L++ G + H V R L L+D
Sbjct: 239 LEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQA-HCHVLRRELPFYAVLQNSLID 297
Query: 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
+Y + G L A + + + W +L G K E+ E+ L++ E D
Sbjct: 298 MYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELF--RLMRDEKRVKPD 355
Query: 395 YV-LLATIYACT 405
V LLA + C+
Sbjct: 356 AVTLLAVLSGCS 367
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 3/175 (1%)
Query: 185 DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244
++G G+ LL++C AL G +H + ++ + Y+ L+ Y KC L+ A
Sbjct: 49 EMGFHGYD--ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDA 106
Query: 245 FCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304
V M +++V+SW +MI Y G EA++ F +M+ + P+ TF +L C
Sbjct: 107 RKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRA 166
Query: 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
+ G + H ++ ++N I L+D+Y +AG++++A E+ D V
Sbjct: 167 SGLGLGKQ-IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVV 220
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 338 bits (868), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 199/554 (35%), Positives = 291/554 (52%), Gaps = 47/554 (8%)
Query: 42 QLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101
+LL N + A+N++I + +A+ M+ + + D FT+ ++AC
Sbjct: 240 ELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIEL-DEFTYPSVIRACAT 298
Query: 102 VKALNKCQELHGFVIR-------------SGYERC-----------------VVVSTNLM 131
L +++H +V+R S Y +C +V L+
Sbjct: 299 AGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALL 358
Query: 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191
GY ++G I A+ +F M E++++SW +IS + F E LKL+ M+ E +
Sbjct: 359 SGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDY 418
Query: 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251
+ SCA +GA G H ++GF S+ GNAL+ MYAKCG ++ A VF M
Sbjct: 419 AFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTM 478
Query: 252 RKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311
D +SWN++I G HG G EA+ +++ML G PD IT L +L CSH GLV++G
Sbjct: 479 PCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGR 538
Query: 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV--LWRTLLGSCK 369
+YF M + Y + PG HY L+DL R+GK A VI S P P +W LL C+
Sbjct: 539 KYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIE-SLPFKPTAEIWEALLSGCR 597
Query: 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429
+H N+E+G IA L L G Y+LL+ ++A T E VAR RKL++ G+K
Sbjct: 598 VHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVAC 657
Query: 430 SWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLE 489
SWIE+ QVH F+VDD SHP+A+ +Y L+++ + +GY D S V + S+ E
Sbjct: 658 SWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFV-LHDVESDGHKE 716
Query: 490 KSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRY 537
HSEK+A+AFGL P GT++RI KNLR S RD+I+RDR R+
Sbjct: 717 DMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRF 776
Query: 538 HHFRDGLCSCGDYW 551
HHFR+G CSCG++W
Sbjct: 777 HHFRNGECSCGNFW 790
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 113/476 (23%), Positives = 185/476 (38%), Gaps = 113/476 (23%)
Query: 35 SSSLSYAQLLFNQIQNPQ---------------------------------TQAWNSLIR 61
SS L+YA+ LF++I P T +N++I
Sbjct: 62 SSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMIT 121
Query: 62 AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNK-CQELHGFVIRSGY 120
F+ + AI + M +PD FTF L V K C + H ++SG
Sbjct: 122 GFSHNNDGYSAINLFCKMKHEGF-KPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGA 180
Query: 121 ERCVVVSTNLMRGYA----ANGVIEAARSVFDNMPERD---------------------- 154
VS L+ Y+ + ++ +AR VFD + E+D
Sbjct: 181 GYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEE 240
Query: 155 ----------LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
LV++N++IS Y F+ EAL++ RM + LD FT ++ +CA G
Sbjct: 241 LLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAG 300
Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
L +G +H S + N+LV +Y KCG D A +F +M +D++SWN+++
Sbjct: 301 LLQLGKQVHAYVLRREDF-SFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLS 359
Query: 265 GY-------------------------------GVHGRGDEAISFFKQMLMAGFHPDSIT 293
GY +G G+E + F M GF P
Sbjct: 360 GYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYA 419
Query: 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS 353
F G + C+ G G +Y H + + + L+ +Y + G +E+A +V T
Sbjct: 420 FSGAIKSCAVLGAYCNGQQY-HAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTM 478
Query: 354 SPSDPVLWRTLLGSCKIH----RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405
D V W L+ + H V++ E +K ++ + + LL + AC+
Sbjct: 479 PCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRIT-----LLTVLTACS 529
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 31/238 (13%)
Query: 229 NALVDMYAKCGNLDSAFCVFSRMR--KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
+V Y G++ A VF + RD + +N+MI G+ + G AI+ F +M G
Sbjct: 84 TTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143
Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY----GCLVDLYGRAGK 342
F PD+ TF +L G + E+ FH LK G + LV +Y +
Sbjct: 144 FKPDNFTFASVLAGLALVADDEKQCVQFHAAA----LKSGAGYITSVSNALVSVYSKCAS 199
Query: 343 ----LEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE---IAMKNLVQLEAASAGDY 395
L A +V + D W T++ + ++GE M + ++L A +A
Sbjct: 200 SPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNA--- 256
Query: 396 VLLATIYACTKDEEGVARTRKLIKS----------NGIKTTPGWSWIEIGNQVHKFVV 443
+++ +E + R+++ S + I+ +++G QVH +V+
Sbjct: 257 -MISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVL 313
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 195/573 (34%), Positives = 303/573 (52%), Gaps = 29/573 (5%)
Query: 3 LKKHARYVGLNKARQAHE--IHGEWLLNSYAISVSSSLSYAQL--------LFNQIQNPQ 52
LK R L Q H I + LN+Y SV + YA+L + +
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDM-YAKLGKLDTAWDILIRFAGKD 555
Query: 53 TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112
+W ++I + Q +A+ + ML + R D T + AC ++AL + Q++H
Sbjct: 556 VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI-RSDEVGLTNAVSACAGLQALKEGQQIH 614
Query: 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172
SG+ + L+ Y+ G IE + F+ D ++WN+++S + Q+ +
Sbjct: 615 AQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNE 674
Query: 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
EAL+++ RM E + + FT + + + + G +H + + G+ V NAL+
Sbjct: 675 EALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALI 734
Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
MYAKCG++ A F + ++ +SWN++I Y HG G EA+ F QM+ + P+ +
Sbjct: 735 SMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHV 794
Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
T +G+L CSH GLV++G+ YF M S Y L P +HY C+VD+ RAG L +A E I
Sbjct: 795 TLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQE 854
Query: 353 SS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
D ++WRTLL +C +H+N+EIGE A +L++LE + YVLL+ +YA +K +
Sbjct: 855 MPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDAR 914
Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
TR+ +K G+K PG SWIE+ N +H F V D++HP AD I+ +++ RA IGY
Sbjct: 915 DLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYV 974
Query: 472 KD-ESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
+D SL+ +D + HSEKLAI+FGL + P + ++KNLR
Sbjct: 975 QDCFSLLNELQHEQKDPI---IFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWI 1031
Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S +R++IVRD R+HHF G CSC DYW
Sbjct: 1032 KFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 173/347 (49%), Gaps = 13/347 (3%)
Query: 44 LFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
+F+++ WN +I+ A S + + +F +++ P+ TF+ L+AC
Sbjct: 142 VFDEMPERTIFTWNKMIKELA-SRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 200
Query: 104 -ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSII 162
A + +++H ++ G VV L+ Y+ NG ++ AR VFD + +D SW ++I
Sbjct: 201 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 260
Query: 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222
S ++ EA++L+ M + + +LS+C + +L +G LH + ++GF
Sbjct: 261 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS 320
Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
YV NALV +Y GNL SA +FS M +RD +++N++I G G G++A+ FK+M
Sbjct: 321 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 380
Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
+ G PDS T L+ CS G + G + H ++ K G L++LY +
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKCAD 439
Query: 343 LEKALEVINTSSPSDPVLWRTLL----------GSCKIHRNVEIGEI 379
+E AL+ + + VLW +L S +I R ++I EI
Sbjct: 440 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEI 486
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 171/326 (52%), Gaps = 2/326 (0%)
Query: 41 AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
A+ +F+ ++ +W ++I +++ +AI + M + + P + F+ L AC+
Sbjct: 241 ARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGI-MPTPYAFSSVLSACK 299
Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
++++L ++LHG V++ G+ V L+ Y G + +A +F NM +RD V++N+
Sbjct: 300 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNT 359
Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
+I+ +Q + +A++L++RM + + D TL L+ +C+ G L G LH ++G
Sbjct: 360 LINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG 419
Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
F + + AL+++YAKC ++++A F +V+ WN M+V YG+ + F+
Sbjct: 420 FASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR 479
Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340
QM + P+ T+ +L C G +E G E H + + N + L+D+Y +
Sbjct: 480 QMQIEEIVPNQYTYPSILKTCIRLGDLELG-EQIHSQIIKTNFQLNAYVCSVLIDMYAKL 538
Query: 341 GKLEKALEVINTSSPSDPVLWRTLLG 366
GKL+ A +++ + D V W T++
Sbjct: 539 GKLDTAWDILIRFAGKDVVSWTTMIA 564
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/514 (22%), Positives = 230/514 (44%), Gaps = 29/514 (5%)
Query: 2 GLKKHARYVGLNKARQAHEIHGEWLLNSYA--ISVSSSLSYAQLLFNQIQNPQTQAWNSL 59
G + HA L A ++I G LLN YA + ++L Y L +++N WN +
Sbjct: 408 GQQLHAYTTKLGFASN-NKIEGA-LLNLYAKCADIETALDY--FLETEVEN--VVLWNVM 461
Query: 60 IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
+ A+ L L+ F + P+ +T+ LK C R+ L +++H +I++
Sbjct: 462 LVAYGL-LDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTN 520
Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
++ V + L+ YA G ++ A + +D+VSW ++I+ YTQ +F +AL +
Sbjct: 521 FQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFR 580
Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
+M + D L +S+CA + AL G +H AC GF + NALV +Y++CG
Sbjct: 581 QMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG 640
Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
++ ++ F + D ++WN+++ G+ G +EA+ F +M G ++ TF +
Sbjct: 641 KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 700
Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV 359
S +++G + H ++++ + L+ +Y + G + A + S + V
Sbjct: 701 AASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEV 759
Query: 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQL--EAASAGDYVLLATIYACTKD---EEGVART 414
W ++ + H G A+ + Q+ L+ + AC+ ++G+A
Sbjct: 760 SWNAIINAYSKHG---FGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYF 816
Query: 415 RKLIKSNGIKTTPG--------WSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE--IMHR 464
+ G+ P + + ++ +F+ + PDA +++R L ++H+
Sbjct: 817 ESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA-LVWRTLLSACVVHK 875
Query: 465 AKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
IG L+ + S ++ S+ Y K
Sbjct: 876 NMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSK 909
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 143/327 (43%), Gaps = 10/327 (3%)
Query: 86 RPDTFTFTFTLKACERVK-ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
RP+ T + L+ C + +L++ ++LH +++ G + +S L Y G + A
Sbjct: 81 RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAF 140
Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204
VFD MPER + +WN +I + E L+ RM E+V + T +L +C G
Sbjct: 141 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-RGG 199
Query: 205 ALNMGIF--LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
++ + +H G +S V N L+D+Y++ G +D A VF +R +D SW +M
Sbjct: 200 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 259
Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
I G + EAI F M + G P F +L C +E G E H +V +
Sbjct: 260 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHGLVLKLG 318
Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMK 382
LV LY G L A + + S D V + TL+ GE AM+
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLS---QCGYGEKAME 375
Query: 383 --NLVQLEAASAGDYVLLATIYACTKD 407
+ L+ L + + AC+ D
Sbjct: 376 LFKRMHLDGLEPDSNTLASLVVACSAD 402
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 180/528 (34%), Positives = 291/528 (55%), Gaps = 17/528 (3%)
Query: 38 LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
L A+ LF+++ + +W +++ + + P +A+ Y+ M SRP+ FT + +
Sbjct: 167 LEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVA 226
Query: 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
A VK + + +E+HG ++R+G + V+ ++LM Y G I+ AR++FD + E+D+VS
Sbjct: 227 AAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVS 286
Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
W S+I Y ++S E L+ + + +T +L++CA + +G +H
Sbjct: 287 WTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMT 346
Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
+GF + ++LVDMY KCGN++SA V K D++SW S+I G +G+ DEA+
Sbjct: 347 RVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALK 406
Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
+F +L +G PD +TF+ +L C+H GLVE+G+E+F+ + ++ L HY CLVDL
Sbjct: 407 YFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLL 466
Query: 338 GRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
R+G+ E+ VI + P P LW ++LG C + N+++ E A + L ++E + Y
Sbjct: 467 ARSGRFEQLKSVI-SEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTY 525
Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
V +A IYA E + RK ++ G+ PG SW EI + H F+ D SHP + I
Sbjct: 526 VTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIV 585
Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
L E+ + K GY SLV + E++ YHSEKLA+AF + +T +GT+++
Sbjct: 586 EFLRELRKKMKEEGYVPATSLVLHDVEDEQK--EENLVYHSEKLAVAFAILSTEEGTAIK 643
Query: 516 IVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
+ KNLRS R + VRD R+H F +G CSCGDYW
Sbjct: 644 VFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 191/432 (44%), Gaps = 43/432 (9%)
Query: 13 NKARQAHEIHGEWLLNSYAISVSSSLSY--AQLLFNQIQNPQTQAWNSLIRA--FAQSLS 68
+ AR+ +HG ++L S +SL + FN L RA F +++
Sbjct: 4 SNARKLTTLHG-FILKRNLSSFHASLKRFSDKKFFNPNHEDGGVVVERLCRANRFGEAID 62
Query: 69 PL--QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV 126
L Q + L+ +P T+ ++ C + +AL + +++H + SG+ +V+
Sbjct: 63 VLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVI 122
Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM----- 181
L+R YA G + AR VFD MP RDL SWN +++ Y + EA KL++ M
Sbjct: 123 WNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDS 182
Query: 182 ---------------------------RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
R + + FT+ +++ A V + G +H
Sbjct: 183 YSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHG 242
Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
G + ++L+DMY KCG +D A +F ++ ++DV+SW SMI Y R E
Sbjct: 243 HIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWRE 302
Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
S F +++ + P+ TF G+L C+ E G + H ++R P LV
Sbjct: 303 GFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQ-VHGYMTRVGFDPYSFASSSLV 361
Query: 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394
D+Y + G +E A V++ D V W +L+G C +N + E + L++ + D
Sbjct: 362 DMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCA--QNGQPDEALKYFDLLLKSGTKPD 419
Query: 395 YVLLATIY-ACT 405
+V + ACT
Sbjct: 420 HVTFVNVLSACT 431
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/543 (35%), Positives = 292/543 (53%), Gaps = 25/543 (4%)
Query: 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
LL+ Y S L A+ +F ++ + ++ S+I +A+ +A+ + M +S
Sbjct: 337 LLDMY--SKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394
Query: 86 RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
PD +T T L C R + L++ + +H ++ + + VS LM YA G ++ A
Sbjct: 395 -PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAEL 453
Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLY----ERMRFEDVGLDGFTLVCLLSSCA 201
VF M +D++SWN+II Y++ + EAL L+ E RF D T+ C+L +CA
Sbjct: 454 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSP---DERTVACVLPACA 510
Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
+ A + G +H G+ +V N+LVDMYAKCG L A +F + +D++SW
Sbjct: 511 SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTV 570
Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
MI GYG+HG G EAI+ F QM AG D I+F+ LL CSH GLV+EG +F++M
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630
Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIA 380
++P ++HY C+VD+ R G L KA I N P D +W LL C+IH +V++ E
Sbjct: 631 KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKV 690
Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHK 440
+ + +LE + G YVL+A IYA + E V R RK I G++ PG SWIEI +V+
Sbjct: 691 AEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNI 750
Query: 441 FVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLA 500
FV D S+P+ + I L ++ R GY+ + E E++ HSEKLA
Sbjct: 751 FVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEK--EEALCGHSEKLA 808
Query: 501 IAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCG 548
+A G+ ++ G +R+ KNLR S R++++RD R+H F+DG CSC
Sbjct: 809 MALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCR 868
Query: 549 DYW 551
+W
Sbjct: 869 GFW 871
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 176/329 (53%), Gaps = 2/329 (0%)
Query: 38 LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
L A +F++++ + WN L+ A+S +I + M M+S D++TF+ K
Sbjct: 145 LKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKM-MSSGVEMDSYTFSCVSK 203
Query: 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
+ +++++ ++LHGF+++SG+ V +L+ Y N +++AR VFD M ERD++S
Sbjct: 204 SFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVIS 263
Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
WNSII+ Y + L ++ +M + +D T+V + + CA +++G +H I
Sbjct: 264 WNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGV 323
Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAIS 277
+ F N L+DMY+KCG+LDSA VF M R V+S+ SMI GY G EA+
Sbjct: 324 KACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVK 383
Query: 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337
F++M G PD T +L C+ L++EG + H + +L I L+D+Y
Sbjct: 384 LFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG-KRVHEWIKENDLGFDIFVSNALMDMY 442
Query: 338 GRAGKLEKALEVINTSSPSDPVLWRTLLG 366
+ G +++A V + D + W T++G
Sbjct: 443 AKCGSMQEAELVFSEMRVKDIISWNTIIG 471
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 180/366 (49%), Gaps = 4/366 (1%)
Query: 41 AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
A+ +F+++ +WNS+I + + + + + ML++ + D T C
Sbjct: 249 ARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGI-EIDLATIVSVFAGCA 307
Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
+ ++ + +H +++ + R L+ Y+ G +++A++VF M +R +VS+ S
Sbjct: 308 DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTS 367
Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
+I+ Y + EA+KL+E M E + D +T+ +L+ CA L+ G +H E
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND 427
Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
++V NAL+DMYAKCG++ A VFS MR +D++SWN++I GY + +EA+S F
Sbjct: 428 LGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFN 487
Query: 281 QMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
+L F PD T +L C+ ++G E H + R LVD+Y +
Sbjct: 488 LLLEEKRFSPDERTVACVLPACASLSAFDKGRE-IHGYIMRNGYFSDRHVANSLVDMYAK 546
Query: 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
G L A + + + D V W ++ +H IA+ N ++ A + ++
Sbjct: 547 CGALLLAHMLFDDIASKDLVSWTVMIAGYGMH-GFGKEAIALFNQMRQAGIEADEISFVS 605
Query: 400 TIYACT 405
+YAC+
Sbjct: 606 LLYACS 611
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 159/340 (46%), Gaps = 8/340 (2%)
Query: 88 DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
D T L+ C K+L +E+ F+ +G+ + + L Y G ++ A VF
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207
D + + WN +++ ++ ++ L+++M V +D +T C+ S + + +++
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212
Query: 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYG 267
G LH + GF E VGN+LV Y K +DSA VF M +RDV+SWNS+I GY
Sbjct: 213 GGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYV 272
Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
+G ++ +S F QML++G D T + + GC+ L+ G H + +
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-RAVHSIGVKACFSRED 331
Query: 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE-IAMKNLVQ 386
+ L+D+Y + G L+ A V S V + +++ R GE + + ++
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAG--YAREGLAGEAVKLFEEME 389
Query: 387 LEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGI 423
E S Y + A + C + +EG R + IK N +
Sbjct: 390 EEGISPDVYTVTAVLNCCARYRLLDEG-KRVHEWIKENDL 428
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 1/178 (0%)
Query: 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247
+D TL +L CA +L G + GFV +G+ L MY CG+L A V
Sbjct: 92 IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151
Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
F ++ L WN ++ G +I FK+M+ +G DS TF + S V
Sbjct: 152 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 211
Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365
G E H + + LV Y + +++ A +V + + D + W +++
Sbjct: 212 HGG-EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSII 268
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 335 bits (860), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 186/562 (33%), Positives = 306/562 (54%), Gaps = 50/562 (8%)
Query: 36 SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
+++ A+ LF++ N++ + + +A+ +N ++M S RPD +
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFN-LMMDSGVRPDRISMLSA 343
Query: 96 LKACERVKALNKCQELHGFVIRSGYE-------------------------------RCV 124
+ +C +++ + + HG+V+R+G+E + V
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403
Query: 125 VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF- 183
V +++ GY NG ++AA F+ MPE+++VSWN+IIS Q S EA++++ M+
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463
Query: 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243
E V DG T++ + S+C H+GAL++ +++ + G V +G LVDM+++CG+ +S
Sbjct: 464 EGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPES 523
Query: 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
A +F+ + RDV +W + I + G + AI F M+ G PD + F+G L CSH
Sbjct: 524 AMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSH 583
Query: 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLW 361
GLV++G E F+ M+ + + P HYGC+VDL GRAG LE+A+++I P +P V+W
Sbjct: 584 GGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIE-DMPMEPNDVIW 642
Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
+LL +C++ NVE+ A + + L G YVLL+ +YA +A+ R +K
Sbjct: 643 NSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEK 702
Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
G++ PG S I+I + H+F D+SHP+ I L+E+ RA +G+ D S V +
Sbjct: 703 GLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDV 762
Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
E S HSEKLA+A+GL ++ GT++RIVKNLR S Y+R++
Sbjct: 763 DEKEKIFMLSR--HSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREI 820
Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
I+RD R+H+ R G CSCGD+W
Sbjct: 821 ILRDNNRFHYIRQGKCSCGDFW 842
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 179/353 (50%), Gaps = 9/353 (2%)
Query: 29 SYAISVSSSLSYAQLLFNQIQNPQTQ-AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRP 87
S + SLS+A+ +F ++ T +NSLIR +A S +AI + M+ + +S P
Sbjct: 74 SCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGIS-P 132
Query: 88 DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147
D +TF F L AC + +A ++HG +++ GY + + V +L+ YA G +++AR VF
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192
Query: 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGAL 206
D M ER++VSW S+I Y + F +A+ L+ RM R E+V + T+VC++S+CA + L
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDL 252
Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
G ++ G + + +ALVDMY KC +D A +F ++ N+M Y
Sbjct: 253 ETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNY 312
Query: 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG 326
G EA+ F M+ +G PD I+ L + CS + G + H V R +
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWG-KSCHGYVLRNGFESW 371
Query: 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEI 379
L+D+Y + + + A + + S V W +++ VE GE+
Sbjct: 372 DNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAG-----YVENGEV 419
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 158/356 (44%), Gaps = 33/356 (9%)
Query: 38 LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
L A+ +F+++ +W S+I +A+ A+ + M+ P++ T +
Sbjct: 185 LDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVIS 244
Query: 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
AC +++ L ++++ F+ SG E ++ + L+ Y I+ A+ +FD +L
Sbjct: 245 ACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDL 304
Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
N++ S Y + EAL ++ M V D +++ +SSC+ + + G H
Sbjct: 305 CNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVL 364
Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGD---- 273
GF + NAL+DMY KC D+AF +F RM + V++WNS++ GY +G D
Sbjct: 365 RNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWE 424
Query: 274 ---------------------------EAISFFKQML-MAGFHPDSITFLGLLCGCSHQG 305
EAI F M G + D +T + + C H G
Sbjct: 425 TFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484
Query: 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLW 361
++ ++ + + + ++ ++ LVD++ R G E A+ + N+ + D W
Sbjct: 485 ALDLA-KWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAW 539
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 149/317 (47%), Gaps = 10/317 (3%)
Query: 95 TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA---ARSVFDNMP 151
+LK C K +++ + H + + G + V T L+ G E+ A+ VF+N
Sbjct: 38 SLKNC---KTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSE 94
Query: 152 ERDLV-SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI 210
+NS+I Y + EA+ L+ RM + D +T LS+CA A GI
Sbjct: 95 SYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGI 154
Query: 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHG 270
+H + +MG+ + ++V N+LV YA+CG LDSA VF M +R+V+SW SMI GY
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214
Query: 271 RGDEAIS-FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
+A+ FF+ + P+S+T + ++ C+ +E G E + + ++
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETG-EKVYAFIRNSGIEVNDLM 273
Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
LVD+Y + ++ A + + S+ L + S + + + + + NL+
Sbjct: 274 VSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNA-MASNYVRQGLTREALGVFNLMMDSG 332
Query: 390 ASAGDYVLLATIYACTK 406
+L+ I +C++
Sbjct: 333 VRPDRISMLSAISSCSQ 349
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 335 bits (860), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 186/547 (34%), Positives = 293/547 (53%), Gaps = 55/547 (10%)
Query: 55 AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
+WN ++ F +S +A+ + + PD T + L + + LN + +HG+
Sbjct: 219 SWNGILSGFNRSGYHKEAVVMFQKIHHLGFC-PDQVTVSSVLPSVGDSEMLNMGRLIHGY 277
Query: 115 VIRSGY--ERCVV-----------------------------VSTNLMRGYAANGVIEAA 143
VI+ G ++CV+ V + G + NG+++ A
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337
Query: 144 RSVFDNMPER----DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199
+F+ E+ ++VSW SII+ Q +EAL+L+ M+ V + T+ +L +
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397
Query: 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259
C ++ AL G H A + +++V+VG+AL+DMYAKCG ++ + VF+ M ++++ W
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCW 457
Query: 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319
NS++ G+ +HG+ E +S F+ ++ PD I+F LL C GL +EG +YF MM
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSE 517
Query: 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGE 378
Y +KP ++HY C+V+L GRAGKL++A ++I D +W LL SC++ NV++ E
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAE 577
Query: 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
IA + L LE + G YVLL+ IYA V R ++S G+K PG SWI++ N+V
Sbjct: 578 IAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRV 637
Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK--DESLVAVSGSSSEDFLEKSSAYHS 496
+ + DKSHP D I K++EI + G+ D +L V E L HS
Sbjct: 638 YTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWG----HS 693
Query: 497 EKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGL 544
EKLA+ FGL TPDGT L+++KNLR S R++ +RD R+HHF+DG+
Sbjct: 694 EKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGI 753
Query: 545 CSCGDYW 551
CSCGD+W
Sbjct: 754 CSCGDFW 760
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/401 (22%), Positives = 164/401 (40%), Gaps = 72/401 (17%)
Query: 41 AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
A L+ I +P +++SLI A ++ Q+I ++ M L PD+ K C
Sbjct: 69 ADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLI-PDSHVLPNLFKVCA 127
Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD------ 154
+ A +++H SG + V ++ Y G + AR VFD M ++D
Sbjct: 128 ELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSA 187
Query: 155 -----------------------------LVSWNSIISCYTQASFHLEALKLYERMRFED 185
+VSWN I+S + ++ +H EA+ +++++
Sbjct: 188 LLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLG 247
Query: 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN----- 240
D T+ +L S LNMG +H + G ++ V +A++DMY K G+
Sbjct: 248 FCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGII 307
Query: 241 --------------------------LDSAFCVFSRMRKR----DVLSWNSMIVGYGVHG 270
+D A +F +++ +V+SW S+I G +G
Sbjct: 308 SLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNG 367
Query: 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330
+ EA+ F++M +AG P+ +T +L C + + G H R +L +
Sbjct: 368 KDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHG-RSTHGFAVRVHLLDNVHVG 426
Query: 331 GCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371
L+D+Y + G++ + V N + V W +L+ +H
Sbjct: 427 SALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMH 467
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 101/209 (48%)
Query: 107 KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYT 166
K + H +++SG + +S L+ Y+ A V ++P+ + S++S+I T
Sbjct: 33 KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALT 92
Query: 167 QASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVY 226
+A +++ ++ RM + D L L CA + A +G +H ++C G +
Sbjct: 93 KAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152
Query: 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286
V ++ MY +CG + A VF RM +DV++ ++++ Y G +E + +M +G
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSG 212
Query: 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFH 315
+ +++ G+L G + G +E V F
Sbjct: 213 IEANIVSWNGILSGFNRSGYHKEAVVMFQ 241
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 335 bits (859), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 185/566 (32%), Positives = 306/566 (54%), Gaps = 57/566 (10%)
Query: 38 LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
++YA+ +F+++ + WN++I + + +A + M +++ PD +
Sbjct: 162 INYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNV-MPDEMILCNIVS 220
Query: 98 ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
AC R + + ++ F+I + R + V
Sbjct: 221 ACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFV 280
Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
ST ++ GY+ G ++ A+ +FD ++DLV W ++IS Y ++ + EAL+++E M +
Sbjct: 281 STAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGI 340
Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
D ++ ++S+CA++G L+ ++H G + + NAL++MYAKCG LD+
Sbjct: 341 KPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRD 400
Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
VF +M +R+V+SW+SMI +HG +A+S F +M P+ +TF+G+L GCSH GL
Sbjct: 401 VFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGL 460
Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLWRTLL 365
VEEG + F M YN+ P ++HYGC+VDL+GRA L +ALEVI + S+ V+W +L+
Sbjct: 461 VEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLM 520
Query: 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425
+C+IH +E+G+ A K +++LE G VL++ IYA + E V R++++ +
Sbjct: 521 SACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFK 580
Query: 426 TPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD--ESLVAVSGSS 483
G S I+ + H+F++ DK H ++ IY KL+E++ + K GY D LV V
Sbjct: 581 EKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEE 640
Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTS------LRIVKNLR------------SIAY 525
+D + +HSEKLA+ FGL +RIVKNLR S Y
Sbjct: 641 KKDLV----LWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVY 696
Query: 526 SRDLIVRDRVRYHHFRDGLCSCGDYW 551
R++IVRDR R+H +++GLCSC DYW
Sbjct: 697 EREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/406 (25%), Positives = 186/406 (45%), Gaps = 38/406 (9%)
Query: 40 YAQLLFNQIQNP-QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98
YA +F+ I +P ++ +N +R ++S P I +Y + R D F+F LKA
Sbjct: 62 YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVG-GRLDQFSFLPILKA 120
Query: 99 CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
+V AL + ELHG + V T M YA+ G I AR+VFD M RD+V+W
Sbjct: 121 VSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTW 180
Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL--NMGIFLHRIA 216
N++I Y + EA KL+E M+ +V D L ++S+C G + N I+ I
Sbjct: 181 NTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIE 240
Query: 217 CEMGF-----------------------------VESVYVGNALVDMYAKCGNLDSAFCV 247
++ V +++V A+V Y+KCG LD A +
Sbjct: 241 NDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVI 300
Query: 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307
F + K+D++ W +MI Y EA+ F++M +G PD ++ ++ C++ G++
Sbjct: 301 FDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGIL 360
Query: 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367
++ ++ H + L+ + L+++Y + G L+ +V + V W +++ +
Sbjct: 361 DKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINA 419
Query: 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEG 410
+H +++ ++ E + + +Y C+ EEG
Sbjct: 420 LSMHGEAS-DALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEG 464
>sp|Q9FI49|PP428_ARATH Pentatricopeptide repeat-containing protein At5g50990
OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2
Length = 534
Score = 334 bits (857), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/424 (40%), Positives = 262/424 (61%), Gaps = 21/424 (4%)
Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCA 201
A+ V N ++++++WN +I Y + + EALK + M F D+ + F+ L++CA
Sbjct: 117 AKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACA 176
Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
+G L+ ++H + + G + + +ALVD+YAKCG++ ++ VF +++ DV WN+
Sbjct: 177 RLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNA 236
Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
MI G+ HG EAI F +M PDSITFLGLL CSH GL+EEG EYF +M R+
Sbjct: 237 MITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRF 296
Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEI 379
+++P ++HYG +VDL GRAG++++A E+I S P +P V+WR+LL S + ++N E+GEI
Sbjct: 297 SIQPKLEHYGAMVDLLGRAGRVKEAYELIE-SMPIEPDVVIWRSLLSSSRTYKNPELGEI 355
Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
A++NL + A +GDYVLL+ IY+ TK E + R+L+ GI+ G SW+E G +H
Sbjct: 356 AIQNLSK---AKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIH 412
Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
+F D SH + IY+ LE ++ + K G+ D LV + S E E++ YHSEKL
Sbjct: 413 RFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEK--EENLNYHSEKL 470
Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
A+A+ + + GT +RI KN+R S +R +I+RDR+R+H F DGLCSC
Sbjct: 471 ALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSC 530
Query: 548 GDYW 551
DYW
Sbjct: 531 RDYW 534
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 112/225 (49%), Gaps = 2/225 (0%)
Query: 41 AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
A+ + + WN +I + +++ +A+ +ML + +P+ F+F +L AC
Sbjct: 117 AKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACA 176
Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
R+ L+ + +H +I SG E ++S+ L+ YA G I +R VF ++ D+ WN+
Sbjct: 177 RLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNA 236
Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGI-FLHRIACEM 219
+I+ + EA++++ M E V D T + LL++C+H G L G + ++
Sbjct: 237 MITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRF 296
Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR-KRDVLSWNSMI 263
+ A+VD+ + G + A+ + M + DV+ W S++
Sbjct: 297 SIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLL 341
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 10/188 (5%)
Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-MAGF 287
N +++ K G A V ++V++WN MI GY + + +EA+ K ML
Sbjct: 102 NLIIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDI 161
Query: 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347
P+ +F L C+ G + ++ H ++ ++ LVD+Y + G + +
Sbjct: 162 KPNKFSFASSLAACARLGDLHHA-KWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSR 220
Query: 348 EVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG-DYV----LLATIY 402
EV + +D +W ++ H + A++ ++EA D + LL T
Sbjct: 221 EVFYSVKRNDVSIWNAMITGFATH---GLATEAIRVFSEMEAEHVSPDSITFLGLLTTCS 277
Query: 403 ACTKDEEG 410
C EEG
Sbjct: 278 HCGLLEEG 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,279,002
Number of Sequences: 539616
Number of extensions: 8212456
Number of successful extensions: 24070
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 18337
Number of HSP's gapped (non-prelim): 1826
length of query: 551
length of database: 191,569,459
effective HSP length: 123
effective length of query: 428
effective length of database: 125,196,691
effective search space: 53584183748
effective search space used: 53584183748
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)