Query 048830
Match_columns 551
No_of_seqs 672 out of 3963
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 13:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 8E-115 2E-119 930.4 61.3 542 2-551 142-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 3E-109 7E-114 907.4 60.4 537 2-549 307-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 3.2E-65 7E-70 560.0 44.9 418 2-427 206-625 (857)
4 PLN03218 maturation of RBCL 1; 100.0 5.3E-58 1.1E-62 494.5 50.0 419 2-428 456-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1E-57 2.2E-62 492.3 48.4 418 3-427 390-847 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-56 3E-61 480.6 43.4 407 51-475 85-495 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.7E-26 1.5E-30 253.3 44.8 397 15-423 460-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-25 3.1E-30 250.6 46.2 391 19-421 430-832 (899)
9 PF14432 DYW_deaminase: DYW fa 99.9 1.3E-26 2.7E-31 184.6 6.5 94 428-541 2-116 (116)
10 KOG4626 O-linked N-acetylgluco 99.9 1E-21 2.3E-26 189.3 28.2 375 21-410 117-508 (966)
11 KOG4626 O-linked N-acetylgluco 99.9 1.1E-20 2.3E-25 182.4 26.1 360 53-424 116-488 (966)
12 TIGR00990 3a0801s09 mitochondr 99.9 7.4E-19 1.6E-23 186.5 42.8 389 24-421 131-571 (615)
13 PRK11447 cellulose synthase su 99.9 5.1E-19 1.1E-23 199.8 41.2 385 27-422 276-701 (1157)
14 PRK11447 cellulose synthase su 99.9 2E-18 4.4E-23 195.0 44.4 391 18-425 301-745 (1157)
15 PRK11788 tetratricopeptide rep 99.9 8.6E-20 1.9E-24 183.7 27.8 297 98-428 44-354 (389)
16 PRK11788 tetratricopeptide rep 99.9 2.4E-19 5.2E-24 180.5 30.5 290 30-327 45-353 (389)
17 PRK10049 pgaA outer membrane p 99.9 7E-18 1.5E-22 182.4 42.4 394 19-421 14-456 (765)
18 PRK15174 Vi polysaccharide exp 99.9 3.7E-18 8.1E-23 180.7 38.5 348 36-392 19-386 (656)
19 PRK15174 Vi polysaccharide exp 99.8 1E-17 2.2E-22 177.4 35.9 326 89-422 42-382 (656)
20 PRK10049 pgaA outer membrane p 99.8 2.8E-16 6.1E-21 170.0 43.0 369 19-396 48-465 (765)
21 PRK09782 bacteriophage N4 rece 99.8 1.9E-15 4.1E-20 163.9 45.4 212 204-422 490-707 (987)
22 TIGR00990 3a0801s09 mitochondr 99.8 4.1E-16 8.9E-21 165.6 37.2 358 56-421 130-537 (615)
23 PRK14574 hmsH outer membrane p 99.8 6.8E-15 1.5E-19 156.5 44.4 387 29-421 43-513 (822)
24 PRK09782 bacteriophage N4 rece 99.8 1.5E-14 3.2E-19 157.0 40.1 381 26-424 319-743 (987)
25 PRK14574 hmsH outer membrane p 99.7 1.3E-13 2.9E-18 146.7 40.2 364 22-395 71-521 (822)
26 KOG2002 TPR-containing nuclear 99.7 9.5E-14 2.1E-18 141.8 31.3 395 17-422 267-746 (1018)
27 KOG2002 TPR-containing nuclear 99.6 5.4E-13 1.2E-17 136.4 30.8 327 70-405 397-763 (1018)
28 KOG2076 RNA polymerase III tra 99.6 1.5E-12 3.3E-17 132.3 32.8 329 99-431 149-522 (895)
29 KOG4422 Uncharacterized conser 99.6 5.8E-12 1.3E-16 117.7 32.2 353 48-423 202-592 (625)
30 PF13429 TPR_15: Tetratricopep 99.6 2.3E-15 5.1E-20 143.8 9.9 254 161-419 14-275 (280)
31 KOG0495 HAT repeat protein [RN 99.6 1.7E-10 3.7E-15 113.5 38.8 407 15-435 474-892 (913)
32 PRK10747 putative protoheme IX 99.6 5.3E-12 1.2E-16 126.3 29.6 284 66-387 97-390 (398)
33 KOG1126 DNA-binding cell divis 99.5 9.1E-13 2E-17 130.0 21.9 275 139-423 334-622 (638)
34 KOG1155 Anaphase-promoting com 99.5 3.1E-11 6.8E-16 114.1 31.0 349 52-419 163-534 (559)
35 PRK10747 putative protoheme IX 99.5 1.1E-11 2.4E-16 124.1 28.5 274 137-420 97-389 (398)
36 TIGR00540 hemY_coli hemY prote 99.5 1.3E-11 2.8E-16 124.2 28.7 289 65-386 96-398 (409)
37 PF13429 TPR_15: Tetratricopep 99.5 1.1E-13 2.4E-18 132.2 13.0 255 59-318 14-275 (280)
38 KOG0547 Translocase of outer m 99.5 3.8E-11 8.2E-16 114.2 29.1 212 202-419 338-564 (606)
39 KOG0495 HAT repeat protein [RN 99.5 4E-10 8.7E-15 110.9 36.9 389 26-423 412-848 (913)
40 KOG1126 DNA-binding cell divis 99.5 4.4E-12 9.5E-17 125.3 22.4 245 169-420 333-585 (638)
41 TIGR00540 hemY_coli hemY prote 99.5 1E-10 2.2E-15 117.8 32.8 250 163-419 126-397 (409)
42 KOG2003 TPR repeat-containing 99.5 2.2E-11 4.8E-16 114.5 24.8 344 56-407 279-709 (840)
43 KOG1155 Anaphase-promoting com 99.5 1.8E-10 3.9E-15 109.1 30.6 253 163-420 235-494 (559)
44 KOG1915 Cell cycle control pro 99.5 1E-09 2.2E-14 104.2 35.1 401 2-419 92-583 (677)
45 KOG2003 TPR repeat-containing 99.5 9.3E-11 2E-15 110.4 27.8 421 25-461 206-722 (840)
46 KOG4422 Uncharacterized conser 99.5 2.8E-10 6E-15 106.7 30.0 349 17-388 204-591 (625)
47 KOG1915 Cell cycle control pro 99.5 1.5E-09 3.2E-14 103.2 34.8 384 36-429 87-508 (677)
48 KOG2076 RNA polymerase III tra 99.4 8E-10 1.7E-14 112.9 34.5 180 36-218 153-344 (895)
49 COG2956 Predicted N-acetylgluc 99.4 3.1E-10 6.7E-15 102.8 27.2 263 66-336 48-324 (389)
50 COG3071 HemY Uncharacterized e 99.4 5.7E-10 1.2E-14 104.2 29.5 286 65-386 96-389 (400)
51 TIGR02521 type_IV_pilW type IV 99.4 6E-11 1.3E-15 109.9 21.8 196 224-420 30-231 (234)
52 KOG1173 Anaphase-promoting com 99.4 3.4E-10 7.4E-15 109.9 25.4 262 153-420 242-517 (611)
53 COG2956 Predicted N-acetylgluc 99.4 1.4E-09 3E-14 98.7 27.1 319 91-446 38-372 (389)
54 KOG1840 Kinesin light chain [C 99.4 3.2E-10 6.8E-15 113.3 25.0 230 190-419 199-477 (508)
55 COG3071 HemY Uncharacterized e 99.3 2.2E-09 4.7E-14 100.3 26.8 276 137-420 97-389 (400)
56 PRK12370 invasion protein regu 99.3 1.5E-09 3.3E-14 113.5 27.7 260 153-422 254-536 (553)
57 PF13041 PPR_2: PPR repeat fam 99.3 1E-11 2.3E-16 83.7 6.7 50 254-303 1-50 (50)
58 PF13041 PPR_2: PPR repeat fam 99.3 9.8E-12 2.1E-16 83.8 6.2 50 153-202 1-50 (50)
59 KOG4318 Bicoid mRNA stability 99.3 9.4E-09 2E-13 104.8 30.0 387 13-425 18-598 (1088)
60 KOG4318 Bicoid mRNA stability 99.2 2.2E-09 4.8E-14 109.2 23.5 85 254-342 202-286 (1088)
61 KOG0547 Translocase of outer m 99.2 2.1E-08 4.6E-13 95.9 28.6 339 56-420 118-490 (606)
62 TIGR02521 type_IV_pilW type IV 99.2 3.4E-09 7.5E-14 98.0 23.4 192 53-249 31-227 (234)
63 PRK12370 invasion protein regu 99.2 5.7E-09 1.2E-13 109.2 26.8 208 69-283 277-500 (553)
64 KOG1129 TPR repeat-containing 99.2 1.1E-09 2.3E-14 99.3 17.1 230 159-422 227-459 (478)
65 KOG1174 Anaphase-promoting com 99.2 1.5E-07 3.3E-12 88.3 31.5 365 22-394 99-507 (564)
66 KOG4162 Predicted calmodulin-b 99.2 4.1E-08 8.9E-13 99.1 28.4 396 16-421 319-783 (799)
67 COG3063 PilF Tfp pilus assembl 99.2 3.1E-09 6.7E-14 92.2 17.4 160 259-423 38-204 (250)
68 PRK11189 lipoprotein NlpI; Pro 99.2 3.8E-09 8.3E-14 101.3 20.1 147 168-317 39-191 (296)
69 PRK11189 lipoprotein NlpI; Pro 99.1 5E-08 1.1E-12 93.6 26.1 221 137-390 39-268 (296)
70 PF12569 NARP1: NMDA receptor- 99.1 4.5E-07 9.8E-12 92.1 33.3 286 27-321 11-335 (517)
71 KOG1173 Anaphase-promoting com 99.1 4.8E-08 1E-12 95.3 24.9 252 60-317 251-515 (611)
72 KOG2047 mRNA splicing factor [ 99.1 3.7E-06 8E-11 83.5 37.3 389 21-419 103-613 (835)
73 KOG1129 TPR repeat-containing 99.1 4.9E-09 1.1E-13 95.2 15.5 220 94-318 228-456 (478)
74 KOG1840 Kinesin light chain [C 99.1 1.5E-08 3.2E-13 101.5 20.0 229 90-318 200-477 (508)
75 KOG2376 Signal recognition par 99.0 1.3E-05 2.8E-10 79.1 36.9 141 271-417 356-516 (652)
76 KOG2047 mRNA splicing factor [ 99.0 4.1E-06 8.8E-11 83.2 33.6 191 228-420 480-686 (835)
77 KOG0548 Molecular co-chaperone 99.0 1.8E-07 3.9E-12 91.0 23.3 370 30-422 12-456 (539)
78 COG3063 PilF Tfp pilus assembl 98.9 2.3E-07 4.9E-12 80.8 19.4 190 229-420 39-235 (250)
79 KOG1125 TPR repeat-containing 98.9 8.2E-08 1.8E-12 94.1 18.5 217 200-419 295-525 (579)
80 PF12569 NARP1: NMDA receptor- 98.9 5E-07 1.1E-11 91.8 24.8 263 165-433 14-308 (517)
81 PF04733 Coatomer_E: Coatomer 98.9 1.4E-07 3E-12 89.3 17.5 154 232-392 109-270 (290)
82 KOG4340 Uncharacterized conser 98.9 2.9E-06 6.3E-11 76.5 24.3 380 23-420 13-442 (459)
83 cd05804 StaR_like StaR_like; a 98.9 1.2E-05 2.5E-10 80.0 32.0 197 54-252 7-213 (355)
84 KOG3785 Uncharacterized conser 98.9 1.7E-06 3.6E-11 79.8 23.2 354 61-425 65-494 (557)
85 KOG1156 N-terminal acetyltrans 98.9 2.1E-05 4.6E-10 78.5 32.3 388 36-434 55-486 (700)
86 PRK04841 transcriptional regul 98.8 5.5E-06 1.2E-10 93.1 32.1 323 100-422 385-761 (903)
87 PRK04841 transcriptional regul 98.8 1.6E-05 3.6E-10 89.3 35.4 361 25-390 346-763 (903)
88 KOG1174 Anaphase-promoting com 98.8 1E-05 2.2E-10 76.4 27.6 173 264-466 342-519 (564)
89 cd05804 StaR_like StaR_like; a 98.8 7.7E-06 1.7E-10 81.2 29.1 298 91-422 8-337 (355)
90 PF04733 Coatomer_E: Coatomer 98.8 7.5E-08 1.6E-12 91.1 13.5 241 164-420 10-264 (290)
91 KOG0985 Vesicle coat protein c 98.8 2.2E-05 4.8E-10 81.8 31.0 320 101-466 1060-1405(1666)
92 KOG0624 dsRNA-activated protei 98.8 1.4E-05 3.1E-10 73.6 26.4 328 58-423 43-396 (504)
93 KOG4162 Predicted calmodulin-b 98.8 0.00011 2.4E-09 75.0 35.0 99 120-218 319-422 (799)
94 KOG3617 WD40 and TPR repeat-co 98.8 2.4E-05 5.2E-10 79.9 29.5 356 18-416 724-1169(1416)
95 KOG3616 Selective LIM binding 98.8 9.4E-06 2E-10 81.7 26.3 78 193-279 768-847 (1636)
96 KOG1070 rRNA processing protei 98.7 9.7E-07 2.1E-11 94.6 20.1 199 223-425 1456-1667(1710)
97 KOG4340 Uncharacterized conser 98.7 1.6E-06 3.4E-11 78.2 17.5 304 92-417 13-335 (459)
98 KOG1156 N-terminal acetyltrans 98.7 6.4E-05 1.4E-09 75.2 29.9 351 63-423 51-436 (700)
99 PRK10370 formate-dependent nit 98.7 1.6E-06 3.4E-11 77.5 16.3 146 263-422 23-174 (198)
100 TIGR03302 OM_YfiO outer membra 98.6 3.1E-06 6.8E-11 78.6 18.8 179 224-421 32-232 (235)
101 PF12854 PPR_1: PPR repeat 98.6 3.8E-08 8.2E-13 59.6 3.7 34 14-49 1-34 (34)
102 KOG3616 Selective LIM binding 98.6 0.0001 2.2E-09 74.5 28.6 260 131-422 739-1025(1636)
103 KOG2376 Signal recognition par 98.6 0.00019 4.1E-09 71.2 30.0 340 60-416 19-400 (652)
104 PRK15359 type III secretion sy 98.6 7.6E-07 1.6E-11 75.2 12.1 120 277-403 14-137 (144)
105 KOG0624 dsRNA-activated protei 98.6 0.00057 1.2E-08 63.4 31.0 304 26-356 44-370 (504)
106 KOG1127 TPR repeat-containing 98.6 2.3E-05 5E-10 81.7 23.8 176 4-183 477-658 (1238)
107 PF12854 PPR_1: PPR repeat 98.6 1.1E-07 2.3E-12 57.6 4.3 33 220-252 2-34 (34)
108 PLN02789 farnesyltranstransfer 98.6 1.9E-05 4.2E-10 75.8 21.9 76 344-419 200-300 (320)
109 PRK15179 Vi polysaccharide bio 98.5 5.3E-06 1.2E-10 87.6 19.3 138 255-397 85-227 (694)
110 KOG3785 Uncharacterized conser 98.5 0.00015 3.3E-09 67.3 25.6 213 198-427 293-520 (557)
111 PRK15359 type III secretion sy 98.5 1E-06 2.2E-11 74.5 10.9 106 312-422 14-122 (144)
112 KOG1128 Uncharacterized conser 98.5 6.5E-06 1.4E-10 83.1 18.0 190 221-425 394-586 (777)
113 KOG1070 rRNA processing protei 98.5 4.6E-05 1E-09 82.2 24.4 231 75-309 1446-1689(1710)
114 PRK10370 formate-dependent nit 98.5 1E-05 2.2E-10 72.3 17.1 153 232-396 23-182 (198)
115 KOG1128 Uncharacterized conser 98.5 1.4E-05 3.1E-10 80.8 19.4 214 121-352 395-612 (777)
116 KOG1127 TPR repeat-containing 98.5 1.7E-05 3.8E-10 82.6 20.0 75 345-420 801-878 (1238)
117 KOG3617 WD40 and TPR repeat-co 98.5 0.00021 4.6E-09 73.3 27.1 204 18-252 755-994 (1416)
118 KOG1125 TPR repeat-containing 98.5 8.9E-06 1.9E-10 80.2 16.8 244 163-411 293-561 (579)
119 KOG0985 Vesicle coat protein c 98.4 0.0018 3.9E-08 68.2 33.3 300 3-340 967-1326(1666)
120 PRK15363 pathogenicity island 98.4 1.2E-05 2.7E-10 66.9 14.6 117 327-466 35-154 (157)
121 TIGR03302 OM_YfiO outer membra 98.4 1.3E-05 2.8E-10 74.4 16.5 181 188-389 31-234 (235)
122 COG5010 TadD Flp pilus assembl 98.4 3.2E-05 6.9E-10 69.2 16.8 116 297-414 106-224 (257)
123 PRK14720 transcript cleavage f 98.4 7E-05 1.5E-09 80.1 22.5 169 88-285 30-198 (906)
124 KOG0548 Molecular co-chaperone 98.4 0.00014 3E-09 71.4 22.4 343 61-421 10-421 (539)
125 KOG3081 Vesicle coat complex C 98.3 0.00041 8.9E-09 62.2 22.6 174 212-392 95-276 (299)
126 COG4783 Putative Zn-dependent 98.3 0.0002 4.4E-09 69.6 22.0 118 300-419 315-435 (484)
127 TIGR02552 LcrH_SycD type III s 98.3 5.6E-06 1.2E-10 69.4 9.9 99 323-421 12-114 (135)
128 PLN02789 farnesyltranstransfer 98.3 0.00091 2E-08 64.4 25.3 223 161-390 43-305 (320)
129 PRK15179 Vi polysaccharide bio 98.3 0.00012 2.6E-09 77.6 20.8 132 220-356 81-217 (694)
130 PRK14720 transcript cleavage f 98.2 0.001 2.2E-08 71.5 26.8 276 50-392 28-311 (906)
131 KOG1914 mRNA cleavage and poly 98.2 0.008 1.7E-07 59.4 33.6 393 17-418 17-536 (656)
132 COG5010 TadD Flp pilus assembl 98.2 6E-05 1.3E-09 67.4 14.5 156 57-216 70-228 (257)
133 TIGR00756 PPR pentatricopeptid 98.2 3.6E-06 7.9E-11 51.6 4.4 35 257-291 1-35 (35)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3E-05 6.4E-10 76.0 12.8 120 295-419 173-295 (395)
135 KOG2053 Mitochondrial inherita 98.1 0.018 3.8E-07 60.5 35.9 67 360-426 438-507 (932)
136 COG4783 Putative Zn-dependent 98.1 0.00066 1.4E-08 66.2 21.0 143 258-422 308-455 (484)
137 TIGR00756 PPR pentatricopeptid 98.1 4.2E-06 9E-11 51.3 4.1 35 156-190 1-35 (35)
138 TIGR02552 LcrH_SycD type III s 98.1 6.3E-05 1.4E-09 62.9 12.1 112 278-393 5-120 (135)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00011 2.5E-09 71.9 14.4 120 57-182 173-295 (395)
140 PF13812 PPR_3: Pentatricopept 98.0 9.7E-06 2.1E-10 49.3 4.0 33 156-188 2-34 (34)
141 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.8E-10 48.7 4.4 33 257-289 2-34 (34)
142 PF09976 TPR_21: Tetratricopep 98.0 0.00014 3.1E-09 61.6 12.0 122 258-383 14-143 (145)
143 cd00189 TPR Tetratricopeptide 98.0 5.9E-05 1.3E-09 58.0 9.0 91 330-420 3-96 (100)
144 KOG1914 mRNA cleavage and poly 97.9 0.028 6E-07 55.8 35.9 369 51-426 18-469 (656)
145 PF13414 TPR_11: TPR repeat; P 97.9 3.3E-05 7.1E-10 56.0 6.4 64 357-420 2-66 (69)
146 KOG1538 Uncharacterized conser 97.9 0.0011 2.3E-08 66.5 18.2 105 54-182 557-672 (1081)
147 KOG3060 Uncharacterized conser 97.9 0.0014 3.1E-08 58.4 17.2 163 228-393 55-226 (289)
148 KOG3081 Vesicle coat complex C 97.9 0.0053 1.2E-07 55.3 20.2 84 235-319 147-235 (299)
149 PF09976 TPR_21: Tetratricopep 97.8 0.00096 2.1E-08 56.5 15.0 123 55-180 14-143 (145)
150 PLN03088 SGT1, suppressor of 97.8 9.7E-05 2.1E-09 72.7 10.0 103 298-403 9-115 (356)
151 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00023 5E-09 57.8 10.0 90 332-421 7-105 (119)
152 KOG3060 Uncharacterized conser 97.8 0.0015 3.4E-08 58.2 15.3 182 238-423 25-222 (289)
153 PF05843 Suf: Suppressor of fo 97.8 0.00084 1.8E-08 63.7 14.6 133 257-392 2-141 (280)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00036 7.8E-09 56.7 10.7 102 295-396 6-114 (119)
155 PF01535 PPR: PPR repeat; Int 97.7 3.8E-05 8.3E-10 45.4 3.4 31 257-287 1-31 (31)
156 PF13432 TPR_16: Tetratricopep 97.7 8E-05 1.7E-09 53.1 5.7 58 364-421 3-60 (65)
157 COG4235 Cytochrome c biogenesi 97.7 0.0003 6.5E-09 64.7 10.6 102 324-425 152-260 (287)
158 PF01535 PPR: PPR repeat; Int 97.7 4.3E-05 9.2E-10 45.2 3.5 30 54-83 1-30 (31)
159 KOG0553 TPR repeat-containing 97.7 0.00011 2.4E-09 67.1 7.4 108 299-409 89-200 (304)
160 PRK02603 photosystem I assembl 97.7 0.00073 1.6E-08 59.1 12.3 130 255-407 34-166 (172)
161 KOG0553 TPR repeat-containing 97.7 0.00025 5.3E-09 64.9 9.3 100 264-367 89-192 (304)
162 KOG0550 Molecular chaperone (D 97.7 0.001 2.3E-08 63.3 13.6 155 264-422 177-351 (486)
163 CHL00033 ycf3 photosystem I as 97.6 0.0003 6.5E-09 61.3 8.9 92 327-418 35-139 (168)
164 PLN03088 SGT1, suppressor of 97.6 0.00054 1.2E-08 67.4 11.7 91 262-356 8-99 (356)
165 PF12895 Apc3: Anaphase-promot 97.6 6.8E-05 1.5E-09 56.7 4.2 77 340-417 2-83 (84)
166 PF13432 TPR_16: Tetratricopep 97.6 0.00014 3.1E-09 51.8 5.6 60 333-392 3-65 (65)
167 PRK15331 chaperone protein Sic 97.6 0.00072 1.6E-08 56.7 10.4 86 334-420 44-133 (165)
168 CHL00033 ycf3 photosystem I as 97.6 0.0028 6E-08 55.2 14.4 109 256-391 35-153 (168)
169 KOG1130 Predicted G-alpha GTPa 97.6 0.0005 1.1E-08 65.2 9.7 128 292-419 196-342 (639)
170 PF14938 SNAP: Soluble NSF att 97.6 0.0088 1.9E-07 57.0 18.5 137 227-364 116-274 (282)
171 PRK02603 photosystem I assembl 97.6 0.00058 1.3E-08 59.8 9.6 80 328-407 36-121 (172)
172 PRK10153 DNA-binding transcrip 97.5 0.003 6.6E-08 65.0 16.0 65 357-422 419-483 (517)
173 cd00189 TPR Tetratricopeptide 97.5 0.00058 1.2E-08 52.3 8.6 91 259-352 3-93 (100)
174 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.11 2.3E-06 50.7 27.7 132 256-391 397-535 (660)
175 PF07079 DUF1347: Protein of u 97.5 0.12 2.6E-06 50.4 29.0 373 31-418 17-521 (549)
176 PF14559 TPR_19: Tetratricopep 97.5 0.0002 4.4E-09 51.5 4.6 53 369-421 2-54 (68)
177 PF14938 SNAP: Soluble NSF att 97.4 0.0074 1.6E-07 57.5 16.4 86 305-390 129-228 (282)
178 PF13371 TPR_9: Tetratricopept 97.4 0.00047 1E-08 50.4 6.4 58 365-422 2-59 (73)
179 COG4700 Uncharacterized protei 97.4 0.0014 3E-08 55.6 9.2 123 288-413 86-214 (251)
180 COG4700 Uncharacterized protei 97.4 0.015 3.2E-07 49.5 15.1 104 322-425 84-193 (251)
181 PF13414 TPR_11: TPR repeat; P 97.4 0.00021 4.6E-09 51.6 3.8 63 327-389 3-69 (69)
182 PF05843 Suf: Suppressor of fo 97.3 0.0014 2.9E-08 62.3 9.8 128 292-421 2-136 (280)
183 PRK15363 pathogenicity island 97.3 0.0086 1.9E-07 50.2 13.1 103 45-150 26-129 (157)
184 KOG0550 Molecular chaperone (D 97.3 0.055 1.2E-06 52.0 19.4 151 200-356 179-350 (486)
185 PF13431 TPR_17: Tetratricopep 97.3 0.00019 4.2E-09 43.2 2.2 32 381-412 2-33 (34)
186 PF10037 MRP-S27: Mitochondria 97.3 0.0057 1.2E-07 60.6 13.5 117 87-203 64-186 (429)
187 PRK10153 DNA-binding transcrip 97.3 0.0064 1.4E-07 62.7 14.4 139 253-393 334-488 (517)
188 PF14559 TPR_19: Tetratricopep 97.2 0.00028 6E-09 50.8 3.2 60 339-398 3-65 (68)
189 PF12895 Apc3: Anaphase-promot 97.2 0.00075 1.6E-08 51.0 5.6 80 269-352 2-83 (84)
190 PF08579 RPM2: Mitochondrial r 97.2 0.0067 1.5E-07 47.2 10.5 80 158-237 28-116 (120)
191 PRK10866 outer membrane biogen 97.2 0.063 1.4E-06 49.7 19.2 172 231-419 38-239 (243)
192 KOG2796 Uncharacterized conser 97.2 0.023 4.9E-07 51.2 15.1 181 3-194 125-323 (366)
193 PF08579 RPM2: Mitochondrial r 97.2 0.0049 1.1E-07 47.9 9.5 81 56-136 28-116 (120)
194 PF12688 TPR_5: Tetratrico pep 97.2 0.011 2.3E-07 47.7 11.7 91 262-352 7-100 (120)
195 PF06239 ECSIT: Evolutionarily 97.1 0.0043 9.4E-08 54.4 9.8 97 245-342 34-153 (228)
196 KOG2041 WD40 repeat protein [G 97.1 0.11 2.3E-06 53.3 20.6 151 36-214 748-902 (1189)
197 PF12688 TPR_5: Tetratrico pep 97.1 0.0049 1.1E-07 49.7 9.4 86 333-418 7-101 (120)
198 PF10037 MRP-S27: Mitochondria 97.1 0.0057 1.2E-07 60.5 11.5 120 119-238 61-186 (429)
199 PF13428 TPR_14: Tetratricopep 97.1 0.0013 2.8E-08 42.5 4.7 42 359-400 2-43 (44)
200 PF04840 Vps16_C: Vps16, C-ter 97.0 0.35 7.5E-06 46.6 31.0 106 230-352 182-287 (319)
201 PF03704 BTAD: Bacterial trans 97.0 0.013 2.8E-07 49.6 11.8 113 301-426 16-135 (146)
202 PRK10866 outer membrane biogen 97.0 0.19 4.2E-06 46.5 20.3 55 297-351 181-236 (243)
203 KOG2053 Mitochondrial inherita 97.0 0.65 1.4E-05 49.4 32.4 50 236-285 201-255 (932)
204 KOG2796 Uncharacterized conser 96.9 0.049 1.1E-06 49.1 14.8 133 257-391 178-319 (366)
205 PF13281 DUF4071: Domain of un 96.9 0.063 1.4E-06 52.2 16.9 158 230-390 146-337 (374)
206 PF13371 TPR_9: Tetratricopept 96.9 0.0032 6.9E-08 45.9 6.5 64 334-397 2-68 (73)
207 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.0039 8.5E-08 61.2 8.6 65 357-421 74-141 (453)
208 PF06239 ECSIT: Evolutionarily 96.9 0.0075 1.6E-07 53.0 9.2 99 40-139 32-153 (228)
209 PF04840 Vps16_C: Vps16, C-ter 96.8 0.5 1.1E-05 45.6 24.1 111 292-418 178-288 (319)
210 PF13525 YfiO: Outer membrane 96.8 0.14 2.9E-06 46.1 17.1 160 234-412 14-198 (203)
211 KOG1130 Predicted G-alpha GTPa 96.8 0.015 3.3E-07 55.5 10.8 256 62-319 26-343 (639)
212 KOG2041 WD40 repeat protein [G 96.7 0.16 3.5E-06 52.1 18.3 247 121-402 689-967 (1189)
213 PRK10803 tol-pal system protei 96.7 0.025 5.4E-07 52.8 12.2 91 302-392 154-251 (263)
214 KOG1538 Uncharacterized conser 96.7 0.25 5.3E-06 50.4 19.3 115 18-147 554-681 (1081)
215 PRK10803 tol-pal system protei 96.7 0.011 2.3E-07 55.2 9.6 94 328-421 144-246 (263)
216 KOG4555 TPR repeat-containing 96.7 0.013 2.8E-07 46.7 8.1 88 336-423 52-146 (175)
217 PF13525 YfiO: Outer membrane 96.6 0.41 8.9E-06 43.0 18.5 50 297-346 147-197 (203)
218 PF09205 DUF1955: Domain of un 96.5 0.26 5.6E-06 39.7 14.5 141 266-424 12-152 (161)
219 KOG0543 FKBP-type peptidyl-pro 96.5 0.028 6.1E-07 54.1 10.7 64 358-421 257-320 (397)
220 COG3898 Uncharacterized membra 96.4 1 2.2E-05 43.4 27.7 241 168-421 133-392 (531)
221 PF13424 TPR_12: Tetratricopep 96.4 0.0077 1.7E-07 44.6 5.2 61 359-419 6-73 (78)
222 PF13424 TPR_12: Tetratricopep 96.3 0.0059 1.3E-07 45.2 4.4 28 292-319 6-33 (78)
223 KOG1920 IkappaB kinase complex 96.2 2.5 5.5E-05 46.6 24.1 156 138-352 894-1051(1265)
224 PRK11906 transcriptional regul 96.1 0.064 1.4E-06 53.0 11.4 79 342-420 319-400 (458)
225 KOG0543 FKBP-type peptidyl-pro 96.1 0.064 1.4E-06 51.7 10.7 136 263-420 215-354 (397)
226 PF12921 ATP13: Mitochondrial 96.0 0.061 1.3E-06 43.8 9.1 52 286-337 47-98 (126)
227 KOG2280 Vacuolar assembly/sort 95.8 2.9 6.3E-05 43.8 24.2 105 232-352 691-795 (829)
228 COG4235 Cytochrome c biogenesi 95.8 0.14 3E-06 47.6 11.4 108 75-185 144-257 (287)
229 COG0457 NrfG FOG: TPR repeat [ 95.7 1.5 3.2E-05 39.5 26.2 192 225-420 59-264 (291)
230 COG3898 Uncharacterized membra 95.7 2.2 4.7E-05 41.2 28.3 304 37-356 68-392 (531)
231 PRK11619 lytic murein transgly 95.7 3.8 8.3E-05 43.8 29.9 77 126-204 101-177 (644)
232 PF03704 BTAD: Bacterial trans 95.6 0.071 1.5E-06 45.0 8.5 70 56-127 65-139 (146)
233 PF13512 TPR_18: Tetratricopep 95.6 0.13 2.7E-06 42.5 9.1 55 338-393 21-82 (142)
234 KOG1941 Acetylcholine receptor 95.6 0.22 4.7E-06 47.2 11.7 47 165-211 16-64 (518)
235 PF04053 Coatomer_WDAD: Coatom 95.4 1.5 3.1E-05 44.5 18.1 159 61-251 269-428 (443)
236 KOG3941 Intermediate in Toll s 95.4 0.11 2.4E-06 47.4 9.0 101 243-344 52-175 (406)
237 KOG1941 Acetylcholine receptor 95.4 0.84 1.8E-05 43.5 14.8 57 300-356 215-275 (518)
238 PF13281 DUF4071: Domain of un 95.4 1.4 3E-05 43.2 16.9 73 128-200 145-227 (374)
239 PF10300 DUF3808: Protein of u 95.4 0.86 1.9E-05 46.8 16.5 158 260-420 192-375 (468)
240 PF02259 FAT: FAT domain; Int 95.3 3.2 7E-05 40.8 20.6 148 254-405 144-305 (352)
241 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.088 1.9E-06 52.0 8.6 58 292-352 76-137 (453)
242 KOG2280 Vacuolar assembly/sort 95.2 5 0.00011 42.2 25.0 305 94-415 442-793 (829)
243 PRK11906 transcriptional regul 95.2 0.95 2.1E-05 45.0 15.2 155 257-415 252-430 (458)
244 PF00515 TPR_1: Tetratricopept 95.1 0.05 1.1E-06 32.5 4.2 32 359-390 2-33 (34)
245 PF12921 ATP13: Mitochondrial 95.1 0.37 8.1E-06 39.2 10.5 48 186-233 48-96 (126)
246 PF07079 DUF1347: Protein of u 95.1 3.9 8.4E-05 40.4 26.3 334 18-363 126-530 (549)
247 KOG1258 mRNA processing protei 95.0 4.8 0.0001 41.3 31.7 180 225-408 297-491 (577)
248 PF07719 TPR_2: Tetratricopept 95.0 0.076 1.6E-06 31.6 4.9 33 359-391 2-34 (34)
249 PF04053 Coatomer_WDAD: Coatom 95.0 0.66 1.4E-05 46.9 14.1 133 265-422 270-403 (443)
250 PF04184 ST7: ST7 protein; In 94.9 1.2 2.7E-05 44.4 15.2 99 293-392 261-380 (539)
251 COG4785 NlpI Lipoprotein NlpI, 94.8 1.5 3.3E-05 38.7 13.8 177 239-422 79-267 (297)
252 PF10300 DUF3808: Protein of u 94.7 5.9 0.00013 40.7 23.5 157 58-218 193-375 (468)
253 COG1729 Uncharacterized protei 94.7 0.23 5E-06 45.6 9.1 89 304-392 154-249 (262)
254 COG0457 NrfG FOG: TPR repeat [ 94.7 3.1 6.6E-05 37.3 24.5 196 191-390 60-268 (291)
255 KOG4234 TPR repeat-containing 94.6 0.12 2.6E-06 44.7 6.6 88 336-423 104-199 (271)
256 KOG4555 TPR repeat-containing 94.6 0.2 4.4E-06 40.1 7.3 87 301-390 53-147 (175)
257 COG5107 RNA14 Pre-mRNA 3'-end 94.6 5.3 0.00011 39.5 31.5 409 4-420 23-530 (660)
258 KOG2610 Uncharacterized conser 94.3 0.35 7.6E-06 45.4 9.3 157 268-427 115-282 (491)
259 KOG3941 Intermediate in Toll s 94.3 0.36 7.8E-06 44.2 9.1 100 39-139 51-173 (406)
260 COG1729 Uncharacterized protei 94.2 0.27 5.9E-06 45.1 8.5 92 329-421 144-244 (262)
261 PRK15331 chaperone protein Sic 94.1 0.44 9.5E-06 40.4 8.9 86 62-150 46-131 (165)
262 KOG2610 Uncharacterized conser 94.0 1.3 2.9E-05 41.7 12.5 152 236-393 114-284 (491)
263 KOG1585 Protein required for f 94.0 4.5 9.7E-05 36.6 17.1 81 332-414 155-249 (308)
264 KOG1585 Protein required for f 93.9 3.2 7E-05 37.5 14.1 81 92-180 34-116 (308)
265 smart00299 CLH Clathrin heavy 93.9 3.2 6.9E-05 34.5 15.3 45 92-137 10-54 (140)
266 KOG0890 Protein kinase of the 93.9 19 0.00041 43.4 23.8 309 95-421 1389-1731(2382)
267 COG4105 ComL DNA uptake lipopr 93.7 5.5 0.00012 36.4 19.7 168 235-420 44-232 (254)
268 PF13512 TPR_18: Tetratricopep 93.6 1.2 2.6E-05 36.8 10.3 116 262-392 16-133 (142)
269 smart00299 CLH Clathrin heavy 93.4 4 8.6E-05 33.9 14.1 41 262-303 13-53 (140)
270 KOG2066 Vacuolar assembly/sort 93.2 13 0.00029 39.4 24.8 25 159-183 509-533 (846)
271 COG3629 DnrI DNA-binding trans 93.0 0.48 1E-05 44.2 8.1 63 358-420 153-215 (280)
272 COG4105 ComL DNA uptake lipopr 93.0 7.2 0.00016 35.7 18.0 136 261-421 39-196 (254)
273 PF09205 DUF1955: Domain of un 92.3 5.2 0.00011 32.5 13.5 65 157-222 88-152 (161)
274 KOG2114 Vacuolar assembly/sort 92.3 18 0.0004 38.8 24.7 54 332-386 710-764 (933)
275 KOG1464 COP9 signalosome, subu 92.3 8.2 0.00018 35.5 14.4 182 239-421 41-261 (440)
276 PF13181 TPR_8: Tetratricopept 92.3 0.34 7.3E-06 28.7 4.2 32 359-390 2-33 (34)
277 KOG1920 IkappaB kinase complex 92.0 16 0.00034 40.9 18.5 137 231-378 914-1059(1265)
278 PF13176 TPR_7: Tetratricopept 91.9 0.38 8.3E-06 29.2 4.1 26 361-386 2-27 (36)
279 PF04097 Nic96: Nup93/Nic96; 91.8 19 0.00041 38.6 19.3 86 163-253 266-355 (613)
280 PF08631 SPO22: Meiosis protei 91.8 12 0.00026 35.5 24.5 27 226-252 122-148 (278)
281 PF13170 DUF4003: Protein of u 91.7 5.6 0.00012 37.9 13.7 63 273-336 160-226 (297)
282 PF13176 TPR_7: Tetratricopept 91.3 0.33 7.2E-06 29.4 3.3 26 394-419 1-26 (36)
283 PF13170 DUF4003: Protein of u 90.9 2.7 5.9E-05 40.0 10.8 126 106-233 79-225 (297)
284 PRK09687 putative lyase; Provi 90.4 16 0.00035 34.6 27.1 241 43-302 27-278 (280)
285 COG2976 Uncharacterized protei 90.4 9.3 0.0002 33.4 12.3 112 274-390 70-191 (207)
286 PF13428 TPR_14: Tetratricopep 90.2 0.93 2E-05 28.9 4.9 29 55-83 3-31 (44)
287 COG3118 Thioredoxin domain-con 90.2 16 0.00035 34.2 17.0 139 199-341 143-286 (304)
288 PF04184 ST7: ST7 protein; In 90.0 24 0.00051 35.7 16.4 142 58-216 173-321 (539)
289 COG3118 Thioredoxin domain-con 89.9 17 0.00037 34.1 17.6 51 266-317 144-194 (304)
290 KOG4648 Uncharacterized conser 89.9 1.3 2.9E-05 41.7 7.4 91 300-393 106-200 (536)
291 PF06552 TOM20_plant: Plant sp 89.5 1.8 3.9E-05 37.2 7.3 47 374-420 51-108 (186)
292 COG1747 Uncharacterized N-term 89.1 27 0.0006 35.3 18.4 94 154-252 65-158 (711)
293 COG4649 Uncharacterized protei 88.7 4.1 8.8E-05 34.8 8.7 138 51-189 57-201 (221)
294 KOG4648 Uncharacterized conser 88.7 0.88 1.9E-05 42.9 5.3 86 334-419 104-192 (536)
295 TIGR02508 type_III_yscG type I 88.5 7.1 0.00015 29.9 8.9 86 206-295 21-106 (115)
296 KOG4570 Uncharacterized conser 88.4 2.4 5.1E-05 39.7 7.8 45 105-149 116-160 (418)
297 PF02259 FAT: FAT domain; Int 88.4 22 0.00047 34.9 15.7 64 357-420 145-212 (352)
298 PF09613 HrpB1_HrpK: Bacterial 88.3 2.3 5E-05 35.9 7.1 64 359-422 8-74 (160)
299 PF10602 RPN7: 26S proteasome 88.1 7 0.00015 34.1 10.4 55 127-181 39-99 (177)
300 KOG0276 Vesicle coat complex C 87.7 11 0.00024 38.8 12.4 133 91-252 616-748 (794)
301 COG3629 DnrI DNA-binding trans 87.6 5.4 0.00012 37.4 9.8 76 56-133 156-236 (280)
302 COG4649 Uncharacterized protei 87.5 7.5 0.00016 33.2 9.5 21 231-251 173-193 (221)
303 KOG4234 TPR repeat-containing 87.4 6.3 0.00014 34.5 9.2 61 335-395 142-205 (271)
304 KOG1308 Hsp70-interacting prot 87.1 0.37 8E-06 45.5 1.9 88 339-426 126-216 (377)
305 COG3947 Response regulator con 87.0 27 0.00058 32.7 14.2 60 360-419 281-340 (361)
306 PF08631 SPO22: Meiosis protei 86.8 29 0.00063 32.9 22.4 154 36-190 7-192 (278)
307 PF10345 Cohesin_load: Cohesin 86.7 49 0.0011 35.5 29.9 194 17-216 27-251 (608)
308 KOG4570 Uncharacterized conser 86.6 8.4 0.00018 36.3 10.2 99 118-220 58-165 (418)
309 TIGR02561 HrpB1_HrpK type III 86.6 2.9 6.2E-05 34.8 6.5 55 370-424 22-76 (153)
310 PF13431 TPR_17: Tetratricopep 86.4 1.4 3E-05 26.3 3.6 24 121-144 10-33 (34)
311 PF00515 TPR_1: Tetratricopept 86.4 1.8 3.9E-05 25.5 4.2 27 258-284 3-29 (34)
312 PF13174 TPR_6: Tetratricopept 86.3 1.9 4.2E-05 25.0 4.2 28 363-390 5-32 (33)
313 PF07035 Mic1: Colon cancer-as 86.2 21 0.00045 30.7 13.3 132 74-218 15-148 (167)
314 PF10602 RPN7: 26S proteasome 85.8 8.4 0.00018 33.6 9.6 63 54-117 37-101 (177)
315 PF07719 TPR_2: Tetratricopept 85.5 1.3 2.9E-05 26.0 3.3 28 393-420 2-29 (34)
316 PF00637 Clathrin: Region in C 85.4 1.2 2.6E-05 37.3 4.2 13 190-202 125-137 (143)
317 PRK12798 chemotaxis protein; R 85.3 41 0.00089 33.4 20.3 179 238-420 125-323 (421)
318 PF09613 HrpB1_HrpK: Bacterial 85.3 22 0.00048 30.2 12.5 18 134-151 54-71 (160)
319 PF07721 TPR_4: Tetratricopept 85.2 1.1 2.4E-05 24.8 2.5 24 393-416 2-25 (26)
320 KOG1586 Protein required for f 85.1 29 0.00064 31.4 15.3 27 369-395 165-191 (288)
321 TIGR02508 type_III_yscG type I 84.5 16 0.00035 28.0 9.7 87 105-195 21-107 (115)
322 PF00637 Clathrin: Region in C 84.4 0.75 1.6E-05 38.5 2.4 85 94-181 12-96 (143)
323 PRK10941 hypothetical protein; 84.4 9.1 0.0002 35.9 9.7 61 360-420 183-243 (269)
324 COG4455 ImpE Protein of avirul 83.9 25 0.00055 31.4 11.3 123 259-392 4-139 (273)
325 KOG4507 Uncharacterized conser 83.7 3.3 7.2E-05 42.2 6.7 98 303-403 619-721 (886)
326 smart00028 TPR Tetratricopepti 83.5 2.2 4.7E-05 23.9 3.7 30 360-389 3-32 (34)
327 PF14853 Fis1_TPR_C: Fis1 C-te 83.2 3.5 7.6E-05 27.6 4.7 34 362-395 5-38 (53)
328 PF07035 Mic1: Colon cancer-as 83.2 29 0.00063 29.8 14.2 134 175-318 14-147 (167)
329 PRK15180 Vi polysaccharide bio 82.9 17 0.00037 36.3 11.0 129 303-436 301-433 (831)
330 PF13374 TPR_10: Tetratricopep 82.9 3.2 7E-05 25.6 4.4 27 360-386 4-30 (42)
331 COG4785 NlpI Lipoprotein NlpI, 82.8 2.6 5.7E-05 37.3 5.0 90 300-392 74-167 (297)
332 KOG2114 Vacuolar assembly/sort 82.2 80 0.0017 34.3 26.0 142 26-179 340-487 (933)
333 cd00923 Cyt_c_Oxidase_Va Cytoc 81.7 11 0.00023 28.8 7.2 59 71-131 25-83 (103)
334 PF02284 COX5A: Cytochrome c o 81.2 8.5 0.00018 29.7 6.5 61 274-336 28-88 (108)
335 PF13374 TPR_10: Tetratricopep 81.0 4.1 8.8E-05 25.1 4.4 28 257-284 3-30 (42)
336 PF11207 DUF2989: Protein of u 81.0 14 0.00031 32.6 8.8 74 171-245 122-198 (203)
337 cd00923 Cyt_c_Oxidase_Va Cytoc 80.9 9.8 0.00021 29.0 6.7 63 271-335 22-84 (103)
338 PF11207 DUF2989: Protein of u 80.2 11 0.00023 33.4 7.8 74 273-347 123-198 (203)
339 PRK09687 putative lyase; Provi 80.1 55 0.0012 31.0 25.1 17 87-103 35-51 (280)
340 KOG0276 Vesicle coat complex C 79.9 27 0.00059 36.1 11.5 147 36-215 600-746 (794)
341 PF09477 Type_III_YscG: Bacter 79.9 26 0.00056 27.3 8.8 87 204-294 20-106 (116)
342 KOG1550 Extracellular protein 79.3 90 0.0019 33.0 21.6 271 140-420 228-537 (552)
343 PF13181 TPR_8: Tetratricopept 79.2 3.8 8.1E-05 24.0 3.6 28 393-420 2-29 (34)
344 PF06552 TOM20_plant: Plant sp 79.2 14 0.0003 32.0 8.0 74 322-426 63-141 (186)
345 PF04190 DUF410: Protein of un 79.0 57 0.0012 30.5 16.2 123 183-320 42-170 (260)
346 PRK15180 Vi polysaccharide bio 78.7 11 0.00023 37.7 8.1 120 268-391 301-424 (831)
347 PF02284 COX5A: Cytochrome c o 78.3 12 0.00026 28.8 6.6 60 71-132 28-87 (108)
348 KOG4642 Chaperone-dependent E3 77.8 5.1 0.00011 36.1 5.2 78 342-419 25-105 (284)
349 KOG1258 mRNA processing protei 76.8 99 0.0022 32.2 26.3 179 189-373 296-490 (577)
350 PF13174 TPR_6: Tetratricopept 76.8 3.2 6.9E-05 24.0 2.7 28 394-421 2-29 (33)
351 PF07721 TPR_4: Tetratricopept 76.6 4.7 0.0001 22.2 3.2 20 129-148 6-25 (26)
352 PF12968 DUF3856: Domain of Un 75.3 34 0.00073 27.4 8.4 62 357-418 54-126 (144)
353 KOG0551 Hsp90 co-chaperone CNS 74.9 7.3 0.00016 37.0 5.6 89 330-418 84-179 (390)
354 PRK13800 putative oxidoreducta 74.4 1.6E+02 0.0035 33.4 27.4 254 43-319 625-880 (897)
355 COG2909 MalT ATP-dependent tra 74.2 1.4E+02 0.0031 32.7 26.5 214 201-417 426-684 (894)
356 PRK13800 putative oxidoreducta 73.9 1.6E+02 0.0036 33.3 24.4 255 143-419 623-879 (897)
357 KOG4279 Serine/threonine prote 73.8 59 0.0013 34.7 12.1 182 157-391 203-399 (1226)
358 PRK11619 lytic murein transgly 73.4 1.4E+02 0.003 32.3 35.8 92 335-426 415-510 (644)
359 COG4455 ImpE Protein of avirul 73.1 13 0.00028 33.2 6.4 61 331-391 5-68 (273)
360 PF14561 TPR_20: Tetratricopep 72.8 14 0.0003 28.0 5.9 45 378-422 8-52 (90)
361 KOG2297 Predicted translation 72.4 90 0.0019 29.6 14.7 20 358-377 321-340 (412)
362 KOG2063 Vacuolar assembly/sort 71.7 91 0.002 34.5 13.7 27 157-183 506-532 (877)
363 KOG1464 COP9 signalosome, subu 71.7 86 0.0019 29.1 16.7 184 167-350 39-254 (440)
364 KOG0890 Protein kinase of the 71.3 2.6E+02 0.0057 34.6 26.6 25 375-399 1772-1796(2382)
365 PF14853 Fis1_TPR_C: Fis1 C-te 71.3 25 0.00054 23.5 6.1 26 395-420 4-29 (53)
366 KOG1586 Protein required for f 70.4 86 0.0019 28.6 15.2 54 338-391 165-228 (288)
367 smart00386 HAT HAT (Half-A-TPR 70.3 9.8 0.00021 21.6 3.8 29 372-400 1-29 (33)
368 PF10366 Vps39_1: Vacuolar sor 69.5 44 0.00095 26.3 8.2 27 258-284 41-67 (108)
369 KOG0292 Vesicle coat complex C 69.4 10 0.00022 40.8 5.8 120 268-418 605-724 (1202)
370 PF09477 Type_III_YscG: Bacter 69.3 53 0.0011 25.7 9.8 87 103-193 20-106 (116)
371 PF04910 Tcf25: Transcriptiona 69.1 70 0.0015 31.6 11.5 62 357-418 99-165 (360)
372 KOG0545 Aryl-hydrocarbon recep 69.0 22 0.00049 32.3 7.0 63 359-421 231-293 (329)
373 PF10345 Cohesin_load: Cohesin 67.8 1.8E+02 0.0039 31.2 31.2 191 50-251 27-251 (608)
374 KOG4507 Uncharacterized conser 67.3 44 0.00096 34.5 9.5 133 288-422 568-706 (886)
375 PF10579 Rapsyn_N: Rapsyn N-te 67.0 18 0.00038 26.5 4.9 45 268-312 18-64 (80)
376 PF11525 CopK: Copper resistan 66.5 1.9 4.1E-05 30.0 -0.0 20 527-546 8-27 (73)
377 KOG1550 Extracellular protein 66.2 1.8E+02 0.004 30.7 22.7 46 70-117 229-277 (552)
378 COG4976 Predicted methyltransf 65.4 11 0.00023 34.0 4.3 56 336-391 4-62 (287)
379 PF04097 Nic96: Nup93/Nic96; 65.3 96 0.0021 33.3 12.4 63 129-191 116-188 (613)
380 KOG0376 Serine-threonine phosp 65.0 4.8 0.0001 40.1 2.4 96 297-395 10-109 (476)
381 KOG2066 Vacuolar assembly/sort 64.9 2.1E+02 0.0046 31.0 23.6 149 99-256 366-536 (846)
382 TIGR02561 HrpB1_HrpK type III 64.6 85 0.0018 26.4 12.8 50 66-117 23-72 (153)
383 PF07163 Pex26: Pex26 protein; 64.5 70 0.0015 29.9 9.4 87 263-352 90-183 (309)
384 COG1747 Uncharacterized N-term 64.1 1.8E+02 0.0039 29.9 21.5 48 189-238 65-112 (711)
385 COG2976 Uncharacterized protei 63.9 1E+02 0.0023 27.2 15.1 89 198-286 97-189 (207)
386 PF08311 Mad3_BUB1_I: Mad3/BUB 63.9 57 0.0012 26.6 8.2 42 376-417 81-124 (126)
387 KOG2063 Vacuolar assembly/sort 63.6 2.5E+02 0.0054 31.4 16.7 18 201-218 695-712 (877)
388 cd08819 CARD_MDA5_2 Caspase ac 63.2 56 0.0012 24.5 7.0 66 209-276 21-86 (88)
389 PF10366 Vps39_1: Vacuolar sor 63.1 46 0.001 26.2 7.3 29 392-420 39-67 (108)
390 PF13929 mRNA_stabil: mRNA sta 63.0 1.4E+02 0.003 28.2 19.4 111 270-380 142-260 (292)
391 PF13762 MNE1: Mitochondrial s 63.0 43 0.00094 27.9 7.3 50 87-136 77-127 (145)
392 KOG3364 Membrane protein invol 62.7 48 0.001 27.2 7.2 48 373-420 50-99 (149)
393 KOG2396 HAT (Half-A-TPR) repea 62.2 1.9E+02 0.0041 29.6 19.5 30 357-386 529-558 (568)
394 PF10579 Rapsyn_N: Rapsyn N-te 61.8 18 0.0004 26.4 4.3 45 370-414 18-65 (80)
395 PF14561 TPR_20: Tetratricopep 61.6 68 0.0015 24.2 8.1 74 344-418 9-85 (90)
396 PF11768 DUF3312: Protein of u 61.2 1.3E+02 0.0029 31.1 11.7 56 229-284 412-472 (545)
397 PF09986 DUF2225: Uncharacteri 60.4 72 0.0016 28.8 9.0 45 377-421 144-194 (214)
398 TIGR03504 FimV_Cterm FimV C-te 59.6 22 0.00049 22.7 4.0 23 161-183 5-27 (44)
399 KOG2300 Uncharacterized conser 58.9 2.1E+02 0.0047 29.1 26.4 354 59-420 13-473 (629)
400 PF13929 mRNA_stabil: mRNA sta 58.2 1.7E+02 0.0037 27.7 20.1 113 168-280 141-262 (292)
401 PF07163 Pex26: Pex26 protein; 57.9 1.3E+02 0.0028 28.2 9.9 19 380-398 266-284 (309)
402 PF12862 Apc5: Anaphase-promot 57.2 36 0.00078 25.9 5.7 52 369-420 9-69 (94)
403 PF00244 14-3-3: 14-3-3 protei 56.8 1.5E+02 0.0033 27.2 10.7 160 262-422 7-199 (236)
404 PF09670 Cas_Cas02710: CRISPR- 55.8 1.6E+02 0.0034 29.5 11.3 53 266-319 141-197 (379)
405 TIGR03504 FimV_Cterm FimV C-te 54.7 31 0.00068 22.0 4.0 22 263-284 6-27 (44)
406 KOG3807 Predicted membrane pro 53.2 1.4E+02 0.0031 28.6 9.6 19 376-394 380-398 (556)
407 PRK13342 recombination factor 53.1 2.6E+02 0.0056 28.3 15.0 44 157-200 229-275 (413)
408 COG4976 Predicted methyltransf 53.1 27 0.00059 31.5 4.8 56 368-423 5-60 (287)
409 PF07720 TPR_3: Tetratricopept 53.0 49 0.0011 20.0 4.8 30 361-390 4-35 (36)
410 COG5187 RPN7 26S proteasome re 52.3 2.1E+02 0.0046 27.0 12.2 64 257-320 116-184 (412)
411 PHA02875 ankyrin repeat protei 51.9 2.3E+02 0.0049 28.5 12.2 79 63-150 9-91 (413)
412 PF11846 DUF3366: Domain of un 51.9 42 0.00092 29.6 6.1 31 288-318 141-171 (193)
413 PHA02875 ankyrin repeat protei 51.7 1.7E+02 0.0037 29.4 11.3 21 231-251 205-225 (413)
414 KOG4077 Cytochrome c oxidase, 51.0 93 0.002 25.2 6.9 45 72-117 68-112 (149)
415 KOG3824 Huntingtin interacting 49.5 31 0.00066 32.5 4.7 59 338-396 127-188 (472)
416 PF07575 Nucleopor_Nup85: Nup8 49.5 2.3E+02 0.0049 30.2 12.0 56 190-247 405-460 (566)
417 COG0790 FOG: TPR repeat, SEL1 49.0 2.4E+02 0.0052 26.7 18.5 76 345-423 173-268 (292)
418 cd08819 CARD_MDA5_2 Caspase ac 48.7 1.1E+02 0.0024 23.0 6.6 38 136-174 48-85 (88)
419 KOG3364 Membrane protein invol 48.3 79 0.0017 26.0 6.2 37 358-394 71-107 (149)
420 PRK10941 hypothetical protein; 48.1 88 0.0019 29.4 7.7 65 332-396 186-253 (269)
421 KOG2396 HAT (Half-A-TPR) repea 47.7 3.3E+02 0.0072 28.0 30.9 390 15-419 100-557 (568)
422 PF11838 ERAP1_C: ERAP1-like C 45.7 2.8E+02 0.0061 26.6 18.2 96 306-402 145-246 (324)
423 PF12069 DUF3549: Protein of u 45.5 3E+02 0.0065 26.8 12.3 91 128-221 170-261 (340)
424 KOG2422 Uncharacterized conser 44.1 2.2E+02 0.0048 29.7 10.0 101 301-403 248-388 (665)
425 PF11846 DUF3366: Domain of un 43.8 90 0.0019 27.5 6.9 31 87-117 142-172 (193)
426 smart00777 Mad3_BUB1_I Mad3/BU 43.2 1.6E+02 0.0034 24.0 7.4 40 377-416 82-123 (125)
427 PRK10564 maltose regulon perip 43.2 47 0.001 31.4 5.0 41 258-298 259-299 (303)
428 PF15297 CKAP2_C: Cytoskeleton 43.2 2.2E+02 0.0048 27.7 9.4 52 374-425 119-173 (353)
429 KOG0376 Serine-threonine phosp 42.9 58 0.0013 32.8 5.8 85 263-352 11-97 (476)
430 KOG4077 Cytochrome c oxidase, 42.8 1.1E+02 0.0023 24.9 6.1 60 274-335 67-126 (149)
431 KOG4567 GTPase-activating prot 42.3 3.1E+02 0.0067 26.3 9.9 82 276-364 263-355 (370)
432 KOG3824 Huntingtin interacting 42.0 33 0.00072 32.3 3.7 54 302-358 127-181 (472)
433 PF15469 Sec5: Exocyst complex 41.8 2.4E+02 0.0051 24.6 10.8 24 296-319 91-114 (182)
434 PF13762 MNE1: Mitochondrial s 41.6 2.1E+02 0.0046 24.0 11.0 50 255-304 78-128 (145)
435 KOG0403 Neoplastic transformat 41.3 3.9E+02 0.0085 27.0 17.1 25 158-182 348-372 (645)
436 COG5191 Uncharacterized conser 41.3 32 0.00069 32.5 3.5 30 368-397 152-181 (435)
437 PF11848 DUF3368: Domain of un 39.8 1E+02 0.0023 20.0 5.1 34 266-299 12-45 (48)
438 TIGR02270 conserved hypothetic 39.6 4.2E+02 0.009 26.8 25.5 122 223-356 159-280 (410)
439 KOG4814 Uncharacterized conser 39.3 98 0.0021 32.6 6.8 83 338-420 365-456 (872)
440 KOG4521 Nuclear pore complex, 39.2 6.6E+02 0.014 29.0 14.2 120 294-414 986-1124(1480)
441 PF11838 ERAP1_C: ERAP1-like C 38.7 3.6E+02 0.0078 25.8 17.7 78 207-284 147-229 (324)
442 PRK10564 maltose regulon perip 38.7 55 0.0012 31.0 4.7 43 153-195 254-297 (303)
443 PF14689 SPOB_a: Sensor_kinase 38.1 52 0.0011 22.8 3.5 30 255-284 22-51 (62)
444 KOG0991 Replication factor C, 37.5 3.3E+02 0.0072 25.0 11.0 48 244-292 227-274 (333)
445 PF08424 NRDE-2: NRDE-2, neces 37.4 3.9E+02 0.0085 25.9 13.8 23 199-221 163-185 (321)
446 KOG0686 COP9 signalosome, subu 37.1 4.4E+02 0.0096 26.4 13.2 59 226-284 151-215 (466)
447 cd02679 MIT_spastin MIT: domai 36.7 35 0.00077 25.1 2.5 61 342-420 4-67 (79)
448 KOG3506 40S ribosomal protein 36.7 15 0.00033 24.3 0.6 9 540-548 14-22 (56)
449 PF02847 MA3: MA3 domain; Int 35.3 1.5E+02 0.0032 23.3 6.3 22 160-181 7-28 (113)
450 PF14689 SPOB_a: Sensor_kinase 35.0 1.1E+02 0.0024 21.1 4.8 30 290-319 22-51 (62)
451 COG5431 Uncharacterized metal- 34.9 11 0.00025 28.7 -0.3 12 539-550 46-57 (117)
452 PF10255 Paf67: RNA polymerase 33.9 5E+02 0.011 26.1 10.8 57 126-182 124-191 (404)
453 cd08326 CARD_CASP9 Caspase act 33.8 2E+02 0.0043 21.4 6.4 40 236-275 41-80 (84)
454 KOG0991 Replication factor C, 33.7 3.8E+02 0.0083 24.6 12.5 53 146-200 230-282 (333)
455 COG2912 Uncharacterized conser 33.6 1.4E+02 0.0031 27.9 6.4 58 363-420 186-243 (269)
456 KOG0687 26S proteasome regulat 33.2 4.6E+02 0.0099 25.4 11.2 26 294-319 107-132 (393)
457 cd08326 CARD_CASP9 Caspase act 33.2 1.6E+02 0.0034 22.0 5.5 61 110-174 20-80 (84)
458 PF08424 NRDE-2: NRDE-2, neces 32.9 4.6E+02 0.01 25.4 14.2 114 273-389 48-185 (321)
459 PRK13342 recombination factor 32.7 5.3E+02 0.012 26.0 13.9 46 259-304 230-278 (413)
460 PF14669 Asp_Glu_race_2: Putat 32.7 3.5E+02 0.0077 23.9 14.6 93 148-250 100-206 (233)
461 PF14863 Alkyl_sulf_dimr: Alky 32.6 2.1E+02 0.0046 23.8 6.8 44 364-407 76-119 (141)
462 COG3947 Response regulator con 32.5 4.5E+02 0.0097 25.1 14.8 57 228-284 282-341 (361)
463 PF10475 DUF2450: Protein of u 32.1 3.9E+02 0.0084 25.5 9.6 22 357-378 196-217 (291)
464 PF04762 IKI3: IKI3 family; I 32.1 8.2E+02 0.018 28.0 14.3 31 225-255 812-844 (928)
465 PF11768 DUF3312: Protein of u 31.7 5.8E+02 0.012 26.7 10.8 22 160-181 413-434 (545)
466 smart00638 LPD_N Lipoprotein N 31.5 6.6E+02 0.014 26.7 19.9 229 105-336 291-541 (574)
467 COG5108 RPO41 Mitochondrial DN 31.5 2E+02 0.0043 30.6 7.5 87 25-117 33-131 (1117)
468 COG5159 RPN6 26S proteasome re 31.3 4.6E+02 0.01 24.8 13.2 156 265-420 12-193 (421)
469 COG0735 Fur Fe2+/Zn2+ uptake r 31.2 2.6E+02 0.0056 23.4 7.3 45 95-139 26-70 (145)
470 PRK11639 zinc uptake transcrip 31.0 2.3E+02 0.005 24.4 7.1 44 97-140 33-76 (169)
471 COG2178 Predicted RNA-binding 30.8 3.8E+02 0.0083 23.7 9.6 49 236-284 40-97 (204)
472 COG2909 MalT ATP-dependent tra 30.8 7.9E+02 0.017 27.4 26.6 218 134-352 425-684 (894)
473 PHA02537 M terminase endonucle 30.4 4.3E+02 0.0093 24.2 10.2 105 265-390 92-210 (230)
474 PF11663 Toxin_YhaV: Toxin wit 29.9 55 0.0012 26.8 2.8 32 169-202 109-140 (140)
475 PF12862 Apc5: Anaphase-promot 29.5 2.5E+02 0.0054 21.2 6.9 18 301-318 51-68 (94)
476 COG3867 Arabinogalactan endo-1 29.2 3.2E+02 0.007 25.9 7.8 84 392-481 139-223 (403)
477 KOG0545 Aryl-hydrocarbon recep 28.5 4.8E+02 0.01 24.2 9.4 62 331-392 234-298 (329)
478 COG4259 Uncharacterized protei 28.3 2E+02 0.0043 22.3 5.2 43 377-419 56-99 (121)
479 PF04034 DUF367: Domain of unk 28.3 3.3E+02 0.0071 22.2 7.1 55 327-382 66-123 (127)
480 KOG0686 COP9 signalosome, subu 27.9 6.3E+02 0.014 25.3 13.8 58 126-183 152-215 (466)
481 PF07575 Nucleopor_Nup85: Nup8 27.8 1.3E+02 0.0028 32.0 6.0 94 53-151 372-465 (566)
482 PF10475 DUF2450: Protein of u 27.7 2.9E+02 0.0063 26.3 7.9 53 129-183 103-155 (291)
483 COG0735 Fur Fe2+/Zn2+ uptake r 27.7 3.1E+02 0.0067 22.9 7.1 45 261-305 25-69 (145)
484 COG5191 Uncharacterized conser 27.6 1.3E+02 0.0029 28.6 5.2 64 357-420 106-170 (435)
485 PF09454 Vps23_core: Vps23 cor 27.5 99 0.0021 21.8 3.4 48 51-100 6-53 (65)
486 PF08311 Mad3_BUB1_I: Mad3/BUB 27.0 3.4E+02 0.0074 22.0 9.8 43 208-250 81-124 (126)
487 PF04910 Tcf25: Transcriptiona 26.9 6.3E+02 0.014 25.0 16.3 53 264-316 111-164 (360)
488 PRK11639 zinc uptake transcrip 26.8 2.7E+02 0.0058 24.0 6.8 36 306-342 40-75 (169)
489 PF03508 Connexin43: Gap junct 26.5 30 0.00065 17.2 0.5 7 544-550 3-9 (20)
490 PF11817 Foie-gras_1: Foie gra 26.1 4.2E+02 0.0091 24.5 8.5 21 395-415 221-241 (247)
491 COG5108 RPO41 Mitochondrial DN 26.0 3.1E+02 0.0067 29.3 7.8 72 94-165 33-113 (1117)
492 PF13934 ELYS: Nuclear pore co 25.9 5.1E+02 0.011 23.6 12.2 94 267-371 89-185 (226)
493 PF00322 Endothelin: Endotheli 25.8 28 0.00061 20.0 0.4 8 543-550 4-11 (31)
494 PF04190 DUF410: Protein of un 25.8 5.5E+02 0.012 24.0 17.1 81 123-218 89-169 (260)
495 COG0790 FOG: TPR repeat, SEL1 25.8 5.6E+02 0.012 24.1 19.8 111 140-253 93-219 (292)
496 PRK14700 recombination factor 24.8 6.2E+02 0.013 24.2 10.2 105 87-204 65-175 (300)
497 PF11817 Foie-gras_1: Foie gra 24.3 1.7E+02 0.0037 27.1 5.5 19 60-78 17-35 (247)
498 KOG0687 26S proteasome regulat 24.3 6.6E+02 0.014 24.4 15.3 26 227-252 106-131 (393)
499 PF12926 MOZART2: Mitotic-spin 24.1 3.2E+02 0.0068 20.6 6.9 62 87-150 8-69 (88)
500 PF09670 Cas_Cas02710: CRISPR- 24.0 7.3E+02 0.016 24.7 11.9 55 62-118 140-198 (379)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.8e-115 Score=930.39 Aligned_cols=542 Identities=33% Similarity=0.599 Sum_probs=535.0
Q ss_pred chhhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048830 2 GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81 (551)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 81 (551)
++++|..+. +.|+.||+.+||.|+++|+++ |++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+
T Consensus 142 a~~l~~~m~--~~g~~~~~~~~n~Li~~y~k~--g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 142 VKAVYWHVE--SSGFEPDQYMMNRVLLMHVKC--GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred HHHHHHHHH--HhCCCcchHHHHHHHHHHhcC--CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578898886 789999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHH
Q 048830 82 ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161 (551)
Q Consensus 82 ~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 161 (551)
.|+. ||..||+.++.+|++.|..+.+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|+++|+++||+|
T Consensus 218 ~g~~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~l 296 (697)
T PLN03081 218 DGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM 296 (697)
T ss_pred hCCC-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 048830 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 241 (551)
|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..+.+.|+.||..++++|+++|+++|++
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~ 376 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 048830 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321 (551)
Q Consensus 242 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 321 (551)
++|.++|++|.++|+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+
T Consensus 377 ~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 377 EDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 322 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
|+.|+..+|++|+++|++.|++++|.+++++ |+. +..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~-~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~ 535 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRR-APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL 535 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence 9999999999999999999999999999999 776 9999999999999999999999999999999999999999999
Q ss_pred HHhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCccCCCccccc
Q 048830 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479 (551)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~ 479 (551)
++|++.|+|++|.++++.|+++|+.+.||+|||++++++|.|++||.+||+.++|++.+.++..+|++.||.||+.+++|
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~ 615 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLP 615 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHhhhhhhhhHHHHHHHHHhcCCCCCCeeeEecccc------------cccccceEEEecCCcccccCCCcCCC
Q 048830 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547 (551)
Q Consensus 480 ~~~~~~~~~~~~~~~~se~la~~~~~~~~~~~~~~~i~kn~r------------s~~~~r~i~~~d~~~~h~f~~g~csc 547 (551)
|+ ++++++..+.+||||||+|||||+||||+||||+|||| |+++||+|||||++|||||+||+|||
T Consensus 616 ~~--~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc 693 (697)
T PLN03081 616 DV--DEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSC 693 (697)
T ss_pred cc--cHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccc
Confidence 99 99999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCC
Q 048830 548 GDYW 551 (551)
Q Consensus 548 ~~~w 551 (551)
||||
T Consensus 694 ~d~w 697 (697)
T PLN03081 694 GDYW 697 (697)
T ss_pred cccC
Confidence 9999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.4e-109 Score=907.39 Aligned_cols=537 Identities=37% Similarity=0.673 Sum_probs=527.5
Q ss_pred chhhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048830 2 GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81 (551)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 81 (551)
|+++|+.+. +.|+.||+.+||+||.+|+++ |++++|.++|++|+.||+++||++|.+|.+.|++++|+++|++|.+
T Consensus 307 a~~l~~~~~--~~g~~~d~~~~n~Li~~y~k~--g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 307 GREMHGYVV--KTGFAVDVSVCNSLIQMYLSL--GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHH--HhCCccchHHHHHHHHHHHhc--CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 678999987 889999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHH
Q 048830 82 ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161 (551)
Q Consensus 82 ~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 161 (551)
.|+. ||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+|
T Consensus 383 ~g~~-Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~m 461 (857)
T PLN03077 383 DNVS-PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461 (857)
T ss_pred hCCC-CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 048830 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 241 (551)
|.+|.+.|+.++|+.+|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+.|+.++..++|+|+++|+++|++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 9999999999999999999986 699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 048830 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321 (551)
Q Consensus 242 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 321 (551)
++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+
T Consensus 541 ~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 541 NYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 9999999999 899999999999999999999999999999999999999999999999999999999999999998778
Q ss_pred CCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 322 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
|+.|+..+|++|+++|++.|++++|.+++++ |+. |..+|++|+.+|+.+|+.+.++.+.+++++++|+++..|..|+
T Consensus 620 gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~-m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~ 698 (857)
T PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINK-MPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC 698 (857)
T ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Confidence 9999999999999999999999999999999 876 9999999999999999999999999999999999999999999
Q ss_pred HHhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCccCCCccccc
Q 048830 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479 (551)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~ 479 (551)
++|+..|+|++|.++++.|+++|++++||+|||++++++|.|.+||.+||+.++|+..|+++..+|++.||.||+..++
T Consensus 699 n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~- 777 (857)
T PLN03077 699 NLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM- 777 (857)
T ss_pred HHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCCCChHHhhhhhhhhHHHHHHHHHhcCCCCCCeeeEecccc------------cccccceEEEecCCcccccCCCcCCC
Q 048830 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547 (551)
Q Consensus 480 ~~~~~~~~~~~~~~~~se~la~~~~~~~~~~~~~~~i~kn~r------------s~~~~r~i~~~d~~~~h~f~~g~csc 547 (551)
++ +||+||..+++||||||+|||||+||||+||||+|||| |++++|||||||++|||||+||+|||
T Consensus 778 ~~--~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc 855 (857)
T PLN03077 778 DE--IEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSC 855 (857)
T ss_pred cc--cHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccC
Confidence 55 67889999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CC
Q 048830 548 GD 549 (551)
Q Consensus 548 ~~ 549 (551)
||
T Consensus 856 ~d 857 (857)
T PLN03077 856 GD 857 (857)
T ss_pred CC
Confidence 98
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-65 Score=560.00 Aligned_cols=418 Identities=27% Similarity=0.451 Sum_probs=406.2
Q ss_pred chhhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048830 2 GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81 (551)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 81 (551)
|+++|+.++ +.|+.||+.++|+||.+|+++ |++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|..
T Consensus 206 ~~~~~~~~~--~~g~~~~~~~~n~Li~~y~k~--g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 206 GREVHAHVV--RFGFELDVDVVNALITMYVKC--GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHHH--HcCCCcccchHhHHHHHHhcC--CCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 678999987 889999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHH
Q 048830 82 ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161 (551)
Q Consensus 82 ~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 161 (551)
.|+. ||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.+||+++||+|
T Consensus 282 ~g~~-Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l 360 (857)
T PLN03077 282 LSVD-PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360 (857)
T ss_pred cCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 048830 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 241 (551)
|.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++|+|+++|+++|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 048830 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321 (551)
Q Consensus 242 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 321 (551)
++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.
T Consensus 441 ~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~- 518 (857)
T PLN03077 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT- 518 (857)
T ss_pred HHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999986 59999999999999999999999999999999876
Q ss_pred CCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc-CCCcchHHHHHH
Q 048830 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE-AASAGDYVLLAT 400 (551)
Q Consensus 322 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~ 400 (551)
|+.++..++++|+++|+++|++++|.++|++ ++.|..+|++++.+|.++|+.++|..+|++|.+.+ .+|..+|..++.
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~-~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHh-cCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 9999999999999999999999999999999 66699999999999999999999999999999876 345789999999
Q ss_pred HhhhcCChhHHHHHHHHHH-hCCCccCC
Q 048830 401 IYACTKDEEGVARTRKLIK-SNGIKTTP 427 (551)
Q Consensus 401 ~~~~~g~~~~a~~~~~~m~-~~g~~~~~ 427 (551)
+|++.|++++|.++|+.|+ +.|+.|+.
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 9999999999999999998 68998864
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.3e-58 Score=494.48 Aligned_cols=419 Identities=16% Similarity=0.214 Sum_probs=386.9
Q ss_pred chhhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC----CCChhhHHHHHHHHHcCCChhHHHHHHH
Q 048830 2 GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ----NPQTQAWNSLIRAFAQSLSPLQAIFYYN 77 (551)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~ 77 (551)
|.++|..+. +.|+.||+.+||.||.+|+++ |++++|.++|++|. .||..+||+||.+|++.|++++|+++|+
T Consensus 456 A~~lf~~M~--~~Gl~pD~~tynsLI~~y~k~--G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 456 ALRVLRLVQ--EAGLKADCKLYTTLISTCAKS--GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred HHHHHHHHH--HcCCCCCHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 567888886 889999999999999999999 99999999999997 6899999999999999999999999999
Q ss_pred HHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---
Q 048830 78 HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR--SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--- 152 (551)
Q Consensus 78 ~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--- 152 (551)
+|...|+. ||..+|+.++.+|++.|++++|.++|++|.+ .|+.||..+|++|+.+|+++|++++|.++|++|.+
T Consensus 532 ~M~~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 532 IMRSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999998 9999999999999999999999999999987 57899999999999999999999999999999975
Q ss_pred -CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 048830 153 -RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231 (551)
Q Consensus 153 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 231 (551)
|+..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|++|
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 6779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCH
Q 048830 232 VDMYAKCGNLDSAFCVFSRMR----KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307 (551)
Q Consensus 232 i~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 307 (551)
|.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 999999999999999999995 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCCccchhhhhHHHh----hcC-------------------CHHHHHHHHhhcCCC----CHHH
Q 048830 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG----RAG-------------------KLEKALEVINTSSPS----DPVL 360 (551)
Q Consensus 308 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~~~~----~~~~ 360 (551)
++|.++|++|.+. |+.||..+|++|+.++. +++ ..++|..+|++|... |..+
T Consensus 771 e~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 771 DVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 9999999999776 99999999999997643 222 246789999884333 9999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhh-cCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCccCCc
Q 048830 361 WRTLLGSCKIHRNVEIGEIAMKNLVQL-EAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPG 428 (551)
Q Consensus 361 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 428 (551)
|+.++.++...+..+.+..+++.+... .+.+..+|..|++.+.+. .++|..++++|...|+.|+..
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999998888888888888888776543 355678999999988432 368999999999999998764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-57 Score=492.30 Aligned_cols=418 Identities=17% Similarity=0.224 Sum_probs=387.7
Q ss_pred hhhhhhHhhhhccC-CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048830 3 LKKHARYVGLNKAR-QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81 (551)
Q Consensus 3 ~~~~~~~~~~~~g~-~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 81 (551)
.+++..+. +.|+ .++..+++.++..|.+. |.+++|..+|+.|+.||..+||.+|.+|++.|++++|.++|++|.+
T Consensus 390 l~Lfd~M~--~~gvv~~~~v~~~~li~~~~~~--g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~ 465 (1060)
T PLN03218 390 IDLLEDME--KRGLLDMDKIYHAKFFKACKKQ--RAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQE 465 (1060)
T ss_pred HHHHHHHH--hCCCCCchHHHHHHHHHHHHHC--CCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 45666665 5664 57888889999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC----CChhH
Q 048830 82 ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE----RDLVS 157 (551)
Q Consensus 82 ~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~ 157 (551)
.|+. ||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+
T Consensus 466 ~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 466 AGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred cCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999964 89999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhh--CCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 048830 158 WNSIISCYTQASFHLEALKLYERMRF--EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235 (551)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 235 (551)
||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.|+.|+..+|+++|.+|
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 99999999999999999999999976 6789999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHH
Q 048830 236 AKCGNLDSAFCVFSRMR----KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311 (551)
Q Consensus 236 ~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 311 (551)
++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.
T Consensus 625 ~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999997 47999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 312 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
++|++|.+. ++.||..+|++||.+|++.|++++|.++|++ |.. |..+|++++.+|.+.|++++|..++++|.+
T Consensus 705 ~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e-M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 705 ELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSE-MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999765 9999999999999999999999999999998 432 999999999999999999999999999998
Q ss_pred hc-CCCcchHHHHHHHhh----hcC-------------------ChhHHHHHHHHHHhCCCccCC
Q 048830 387 LE-AASAGDYVLLATIYA----CTK-------------------DEEGVARTRKLIKSNGIKTTP 427 (551)
Q Consensus 387 ~~-p~~~~~~~~l~~~~~----~~g-------------------~~~~a~~~~~~m~~~g~~~~~ 427 (551)
.+ ..+..+|..|+.+|. +++ ..++|..+|++|.+.|+.|+.
T Consensus 783 ~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 783 DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 76 345677888876643 222 236799999999999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-56 Score=480.61 Aligned_cols=407 Identities=23% Similarity=0.337 Sum_probs=375.7
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcC-CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 048830 51 PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS-LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN 129 (551)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 129 (551)
++..+|+++|.+|.+.|++++|+++|+.|...+ .. ||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~-~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFT-LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 466799999999999999999999999999875 55 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHH
Q 048830 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 209 (551)
|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048830 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289 (551)
Q Consensus 210 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (551)
.+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHH
Q 048830 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSC 368 (551)
Q Consensus 290 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~ 368 (551)
|..||+.++.+|++.|++++|.+++..|.+. |+.||..+|++|+++|+++|++++|.++|++ |+. |..+|++|+.+|
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~-m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDR-MPRKNLISWNALIAGY 401 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHh-CCCCCeeeHHHHHHHH
Confidence 9999999999999999999999999999876 9999999999999999999999999999999 666 999999999999
Q ss_pred HhcCcHHHHHHHHHHHHhhc-CCCcchHHHHHHHhhhcCChhHHHHHHHHHHh-CCCccCCceeEEEECCEEEEEEecCC
Q 048830 369 KIHRNVEIGEIAMKNLVQLE-AASAGDYVLLATIYACTKDEEGVARTRKLIKS-NGIKTTPGWSWIEIGNQVHKFVVDDK 446 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~~~~~~~ 446 (551)
.++|+.++|.++|++|.+.+ .+|..+|..++.+|++.|+.++|.++|+.|.+ .|+.|+...... ++....
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~--------li~~l~ 473 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC--------MIELLG 473 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh--------HHHHHH
Confidence 99999999999999999876 44688999999999999999999999999975 688876432110 112223
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCccCCCc
Q 048830 447 SHPDADMIYRKLEEIMHRAKFIGYTKDES 475 (551)
Q Consensus 447 ~~~~~~~~~~~l~~l~~~~~~~g~~p~~~ 475 (551)
..+..+++.+ .++++++.|+..
T Consensus 474 r~G~~~eA~~-------~~~~~~~~p~~~ 495 (697)
T PLN03081 474 REGLLDEAYA-------MIRRAPFKPTVN 495 (697)
T ss_pred hcCCHHHHHH-------HHHHCCCCCCHH
Confidence 3444444443 345567888753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=6.7e-26 Score=253.25 Aligned_cols=397 Identities=13% Similarity=0.058 Sum_probs=314.8
Q ss_pred cCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhh
Q 048830 15 ARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT 91 (551)
Q Consensus 15 g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~ 91 (551)
..++++.+++.+...|... |++++|...|+++. +.+...+..+...+...|++++|...|+++....+ .+..+
T Consensus 460 ~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~ 535 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGK--GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP--KNLRA 535 (899)
T ss_pred hCCCCcHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CcHHH
Confidence 3456788899999999999 99999999998753 44667788888889999999999999999988764 46778
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhc
Q 048830 92 FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQA 168 (551)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 168 (551)
+..+...+.+.|+.++|...+.++.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+..+|..+...|...
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 8888888888999999999998888764 55667778888889999999999998888764 4567888888888889
Q ss_pred CChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 048830 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248 (551)
Q Consensus 169 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 248 (551)
|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..++..+...|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998887653 3455667778888888888999988888888754 345677888888888888888888888
Q ss_pred HhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 048830 249 SRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325 (551)
Q Consensus 249 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 325 (551)
+.+.+ .+...+..+...+...|++++|...|+++... .|+..++..+..++.+.|++++|...++.+.+. .+.
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~ 768 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPN 768 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 88764 35667777888888888888888888888775 355566777778888888888888888887653 334
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 402 (551)
+...+..+...|...|++++|.+.|++++.. ++.+++.+...+...|+ ++|+..++++++..|+++..+..++.+|
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 6677777888888888888888888774433 77777888888877777 7788888888888888887777888888
Q ss_pred hhcCChhHHHHHHHHHHhCCC
Q 048830 403 ACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~g~ 423 (551)
...|++++|.++++++.+.+.
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCC
Confidence 888888888888887776554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.4e-25 Score=250.60 Aligned_cols=391 Identities=13% Similarity=0.013 Sum_probs=337.3
Q ss_pred CccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 048830 19 HEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95 (551)
Q Consensus 19 ~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~l 95 (551)
+......++..|.+. |++++|..+++.+. +++..+|+.+...+...|++++|...|+++.+..+ .+...+..+
T Consensus 430 ~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l 505 (899)
T TIGR02917 430 LGRADLLLILSYLRS--GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANL 505 (899)
T ss_pred chhhHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHH
Confidence 345666788889999 99999999998775 34677899999999999999999999999988764 456677788
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChH
Q 048830 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHL 172 (551)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 172 (551)
...+...|++++|.+.++.+.+.. +.+..++..+...|.+.|+.++|...|+++.. .+...+..++..|.+.|+++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHH
Confidence 888999999999999999998875 56778889999999999999999999988754 45567888999999999999
Q ss_pred HHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 173 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
+|+.+++++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...|+++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999997643 5567788999999999999999999999998865 3457788889999999999999999999876
Q ss_pred C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccc
Q 048830 253 K---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329 (551)
Q Consensus 253 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 329 (551)
+ .+..+|..++..+...|++++|..+++.+.+.. +++...+..+...+...|++++|...|+.+.. ..|+..+
T Consensus 663 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 738 (899)
T TIGR02917 663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQN 738 (899)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchH
Confidence 4 467889999999999999999999999998875 55667788888899999999999999999875 3566677
Q ss_pred hhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC
Q 048830 330 YGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406 (551)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 406 (551)
+..++.++.+.|++++|.+.+++++.. +..++..+...|...|+.++|...|+++++..|+++..+..++.++...|
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 888999999999999999988874433 88899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 048830 407 DEEGVARTRKLIKSN 421 (551)
Q Consensus 407 ~~~~a~~~~~~m~~~ 421 (551)
+ ++|..+++++.+.
T Consensus 819 ~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 819 D-PRALEYAEKALKL 832 (899)
T ss_pred c-HHHHHHHHHHHhh
Confidence 9 8899999988764
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.93 E-value=1.3e-26 Score=184.60 Aligned_cols=94 Identities=53% Similarity=0.849 Sum_probs=84.9
Q ss_pred ceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCccCCCccccccCCCChHHh--------hhhhhhhHHHH
Q 048830 428 GWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFL--------EKSSAYHSEKL 499 (551)
Q Consensus 428 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~--------~~~~~~~se~l 499 (551)
||||+++ |.|++|+.+||+. ++..++...||.|++..++|++ +++++ +..+.+|||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~d~~~~~~~~~~HSEKl 67 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDV--DEEEKHDYDEEEKEESLCYHSEKL 67 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCc--hhhhhhhcccccchhhhhccHHHH
Confidence 7899876 9999999999988 4566778889999999999988 55544 66899999999
Q ss_pred HHHHHhcCCCCCCeeeEeccc-c------------cccccceEEEecCCcccccC
Q 048830 500 AIAFGLATTPDGTSLRIVKNL-R------------SIAYSRDLIVRDRVRYHHFR 541 (551)
Q Consensus 500 a~~~~~~~~~~~~~~~i~kn~-r------------s~~~~r~i~~~d~~~~h~f~ 541 (551)
|+||||+++ ||+||+ | |+++||+|+|||++|||||+
T Consensus 68 Aiafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 68 AIAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 999999998 999999 8 99999999999999999997
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1e-21 Score=189.31 Aligned_cols=375 Identities=16% Similarity=0.120 Sum_probs=252.2
Q ss_pred cHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH-HHH
Q 048830 21 IHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT-FTL 96 (551)
Q Consensus 21 ~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~-~ll 96 (551)
.+|.-+.+.+-.. |++++|..+++.+. +..+..|..+..++...|+.+.|.+.|.+.++.+ |+..... .+.
T Consensus 117 e~ysn~aN~~ker--g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln---P~l~ca~s~lg 191 (966)
T KOG4626|consen 117 EAYSNLANILKER--GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN---PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHh--chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---cchhhhhcchh
Confidence 3555566666666 77777777777554 2356677777777777777777777777776654 5444332 223
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCC---hhHHHHHHHHHHhcCChHH
Q 048830 97 KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD---LVSWNSIISCYTQASFHLE 173 (551)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~ 173 (551)
......|++++|...+.+.++.. +.=...|+.|...+-..|++..|+.-|++...-| ..+|-.|...|...+.+++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 33334577777777777666642 2224456777777777777777777777766522 3456677777777777777
Q ss_pred HHHHHHHhhhCCcccC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 048830 174 ALKLYERMRFEDVGLD-GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 174 A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~ 251 (551)
|+..|.+.... .|+ ...+..+...|-..|.++.|...+++.++. .|+ +..|+.|..++-..|++.+|.+.+.+.
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 77777666543 343 345556666666777777777777777764 344 567777777777777777777777766
Q ss_pred CC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-
Q 048830 252 RK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG- 326 (551)
Q Consensus 252 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 326 (551)
.. ....+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|...+++.+ .++|+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~f 421 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTF 421 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchH
Confidence 53 2455667777777777777777777777665 34443 556777777777777777777777765 56675
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
...|+.+...|-..|+.+.|.+.+.+++.. -....+.|...|...|+..+|+..|+.++++.|+.|.+|-.++.++.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 566777777777777777777777776665 34556777777777777777777777777777777777777777666
Q ss_pred hcCChhH
Q 048830 404 CTKDEEG 410 (551)
Q Consensus 404 ~~g~~~~ 410 (551)
--.+|.+
T Consensus 502 ~vcdw~D 508 (966)
T KOG4626|consen 502 IVCDWTD 508 (966)
T ss_pred HHhcccc
Confidence 6666655
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-20 Score=182.44 Aligned_cols=360 Identities=14% Similarity=0.104 Sum_probs=311.5
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh-HHHHHH
Q 048830 53 TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV-VSTNLM 131 (551)
Q Consensus 53 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li 131 (551)
..+|..+...+-..|++++|+.+++.|.+..+ -....|..+..++...|+.+.|.+.|...++. .|+.. ..+.+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 34688899999999999999999999999875 36778999999999999999999999999875 45544 344556
Q ss_pred HHHHhCCCHHHHHHHhccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccC-HHHHHHHHHHHHhcCChH
Q 048830 132 RGYAANGVIEAARSVFDNMPE--RD-LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD-GFTLVCLLSSCAHVGALN 207 (551)
Q Consensus 132 ~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~ 207 (551)
...-..|++++|...|.+..+ |. .++|+.|...+..+|+...|++.|++..+. .|+ ...|..+.+.|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 666778999999998877665 33 468999999999999999999999998764 455 347889999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 208 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
.|...+..+.... +....++..|...|...|.++-|+..+++..+ | -..+|+.|..++...|++.+|...|.+...
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999998887753 23467888899999999999999999999875 3 357999999999999999999999999988
Q ss_pred cCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHH
Q 048830 285 AGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPV 359 (551)
Q Consensus 285 ~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~ 359 (551)
. .|+ ....+.|...+...|.++.|..+|.... .+.|. ....+.|...|-.+|++++|+.-|++++.. -..
T Consensus 349 l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 L--CPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred h--CCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 5 455 4788999999999999999999999886 45665 577889999999999999999999998877 567
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
.++.+...|...|+.+.|...+.+++..+|.-+.++..|+.+|-.+|+..+|+.-++...+....
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 78999999999999999999999999999999999999999999999999999999988774443
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=7.4e-19 Score=186.51 Aligned_cols=389 Identities=11% Similarity=-0.026 Sum_probs=285.6
Q ss_pred HHHHHHHHcCCCCChHHHHHHHhcCC--CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 048830 24 EWLLNSYAISVSSSLSYAQLLFNQIQ--NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101 (551)
Q Consensus 24 ~~li~~~~~~~~g~~~~A~~lf~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~ 101 (551)
..+-..|.+. |++++|...|++.. .|+...|..+..+|...|++++|++.++..++..+ .+...+..+..++..
T Consensus 131 k~~G~~~~~~--~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 131 KEKGNKAYRN--KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP--DYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 3455667777 89999999998754 46777888888889999999999999999887764 355678888888899
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--C--------------------------
Q 048830 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--R-------------------------- 153 (551)
Q Consensus 102 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-------------------------- 153 (551)
.|++++|..-+..+...+-..+... ..++.-+........+...++.-+. +
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999887766654431112111 1111111111111222222221111 0
Q ss_pred -Ch---hHHHHHHHHH---HhcCChHHHHHHHHHhhhCC-ccc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 048830 154 -DL---VSWNSIISCY---TQASFHLEALKLYERMRFED-VGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224 (551)
Q Consensus 154 -~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 224 (551)
+. ..+..+...+ ...+++++|++.|++..+.+ ..| +...+..+...+...|++++|...++.+++.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 00 0011111111 12368999999999998765 234 34567777788889999999999999998864 223
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 301 (551)
...|..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+...+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 66888899999999999999999998754 467889999999999999999999999998853 23456677888899
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHH-------HHHHHHHHHHhc
Q 048830 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPV-------LWRTLLGSCKIH 371 (551)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~-------~~~~ll~~~~~~ 371 (551)
.+.|++++|...|+...+. .+.+...+..+..+|...|++++|.+.|++++.. +.. .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999999753 2235778899999999999999999999986654 111 122222334456
Q ss_pred CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
|++++|...++++++++|++...+..++.++...|++++|.+.+++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988653
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=5.1e-19 Score=199.81 Aligned_cols=385 Identities=13% Similarity=0.057 Sum_probs=285.2
Q ss_pred HHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH----------
Q 048830 27 LNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT---------- 93 (551)
Q Consensus 27 i~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~---------- 93 (551)
-..+... |++++|...|++.. +.+...+..+...|.+.|++++|+..|++..+..+..++...+.
T Consensus 276 G~~~~~~--g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDS--GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3456667 99999999998754 34778888999999999999999999999887764312211121
Q ss_pred --HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhc
Q 048830 94 --FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQA 168 (551)
Q Consensus 94 --~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 168 (551)
.....+.+.|++++|...++++++.. +.+...+..+..+|...|++++|++.|++..+ .+...+..+...|. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 22345678899999999999999874 45677788889999999999999999998764 34556666777664 4
Q ss_pred CChHHHHHHHHHhhhCCcc--------cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048830 169 SFHLEALKLYERMRFEDVG--------LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240 (551)
Q Consensus 169 g~~~~A~~~~~~m~~~~~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 240 (551)
++.++|+.+++.+...... .....+..+...+...|++++|.+.++++++... .+..++..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 5788888888765432110 0112344556677788999999999999888652 346677788889999999
Q ss_pred HHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh---------hHHHHHHHHhccCCHH
Q 048830 241 LDSAFCVFSRMRK--R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI---------TFLGLLCGCSHQGLVE 308 (551)
Q Consensus 241 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~~~~~~g~~~ 308 (551)
+++|...|+++.+ | +...+..+...+...|+.++|+..++.+......++.. .+..+...+...|+.+
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 9999999988743 3 55556556666777888999988888764332222211 1234556677888888
Q ss_pred HHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048830 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 385 (551)
+|..+++. .+++...+..+...|.+.|++++|++.|++++.. +...+..++..+...|+.++|+..++++.
T Consensus 591 eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88887761 2335566777888888888999988888875544 78888888888888888999988888888
Q ss_pred hhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 386 QLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 386 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
+..|+++..+..++.++...|++++|.++++++....
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 8888888888888888888888999888888876543
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=2e-18 Score=194.96 Aligned_cols=391 Identities=13% Similarity=0.040 Sum_probs=312.0
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC--CC---hhhHHHH------------HHHHHcCCChhHHHHHHHHHH
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN--PQ---TQAWNSL------------IRAFAQSLSPLQAIFYYNHML 80 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~--~~---~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~ 80 (551)
.+...+..|...|.+. |++++|...|++..+ |+ ...|..+ ...+.+.|++++|+..|++..
T Consensus 301 ~~~~a~~~Lg~~~~~~--g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 301 KDSEALGALGQAYSQQ--GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3677888999999999 999999999987642 32 2223322 345778999999999999999
Q ss_pred HcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCC------
Q 048830 81 MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD------ 154 (551)
Q Consensus 81 ~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~------ 154 (551)
...+ .+...+..+...+...|++++|.+.|+++++.. +.+...+..+...|. .++.++|..+++.++...
T Consensus 379 ~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 379 QVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH
Confidence 8865 466678888899999999999999999999864 445667777888775 467899999998876421
Q ss_pred ------hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCccc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 048830 155 ------LVSWNSIISCYTQASFHLEALKLYERMRFEDVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227 (551)
Q Consensus 155 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 227 (551)
...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++|...++.+++.. +.+...
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~ 531 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQ 531 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 224556778888999999999999999875 34 45567778889999999999999999998754 234555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC----CH---------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRKR----DV---------LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 294 (551)
+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+.++|+.+++. .+++...+
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~ 606 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRID 606 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHH
Confidence 556666778899999999999988642 11 1123456678899999999999882 24455677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHh
Q 048830 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKI 370 (551)
Q Consensus 295 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~ 370 (551)
..+...+.+.|+.++|...|+.+.+. .| +...+..++.+|...|++++|++.+++.+.. +...+..+..++..
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh
Confidence 78888999999999999999999863 45 6788899999999999999999999985443 67788888899999
Q ss_pred cCcHHHHHHHHHHHHhhcCCCcc------hHHHHHHHhhhcCChhHHHHHHHHHH-hCCCcc
Q 048830 371 HRNVEIGEIAMKNLVQLEAASAG------DYVLLATIYACTKDEEGVARTRKLIK-SNGIKT 425 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~ 425 (551)
.|++++|...++++++..|+++. .+..++.++...|++++|...+++.. ..|+.|
T Consensus 684 ~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999998766543 56667999999999999999998774 345543
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=8.6e-20 Score=183.73 Aligned_cols=297 Identities=14% Similarity=0.080 Sum_probs=168.0
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCC-C------hhHHHHHHHHHHhcCC
Q 048830 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER-D------LVSWNSIISCYTQASF 170 (551)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~------~~~~~~li~~~~~~g~ 170 (551)
.+...|++++|...|.++.+.. +.+..++..+...|.+.|++++|..+++.+... + ...+..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455667777777777776653 334556666667777777777777776665431 1 1345666666666677
Q ss_pred hHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048830 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250 (551)
Q Consensus 171 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 250 (551)
+++|+.+|.++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 777777776665532 23445566666666666666666666666655432221100
Q ss_pred cCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--cc
Q 048830 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG--IK 328 (551)
Q Consensus 251 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 328 (551)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .|+ ..
T Consensus 179 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~ 250 (389)
T PRK11788 179 ----IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSE 250 (389)
T ss_pred ----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHH
Confidence 00112333344444455555555555444421 112233444444555555555555555555432 121 23
Q ss_pred chhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh--
Q 048830 329 HYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC-- 404 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 404 (551)
++..++.+|.+.|++++|.+.++++... +...+..++..+...|++++|..+++++++..|+++ .+..+...+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~ 329 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhcc
Confidence 3445555555555555555555552222 333445666777777778888888888888888765 34444444432
Q ss_pred -cCChhHHHHHHHHHHhCCCccCCc
Q 048830 405 -TKDEEGVARTRKLIKSNGIKTTPG 428 (551)
Q Consensus 405 -~g~~~~a~~~~~~m~~~g~~~~~~ 428 (551)
.|+.+++..++++|.++++.++|.
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCC
Confidence 558888888888888888888876
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.4e-19 Score=180.48 Aligned_cols=290 Identities=14% Similarity=0.044 Sum_probs=174.1
Q ss_pred HHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC---hhhHHHHHHHHhccC
Q 048830 30 YAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD---TFTFTFTLKACERVK 103 (551)
Q Consensus 30 ~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd---~~~~~~ll~~~~~~~ 103 (551)
+... |++++|...|.++. +.+..+|..+...+.+.|++++|+.+++.+...+.. ++ ...+..+...+...|
T Consensus 45 ~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLN--EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDL-TREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhc--CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHCC
Confidence 3444 66777777776654 224445666666667777777777777766654321 11 134555666666667
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCC--C------hhHHHHHHHHHHhcCChHHHH
Q 048830 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER--D------LVSWNSIISCYTQASFHLEAL 175 (551)
Q Consensus 104 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~------~~~~~~li~~~~~~g~~~~A~ 175 (551)
++++|..+|..+.+.. +++..+++.++.+|.+.|++++|.+.|+.+.+. + ...|..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 7777777776666542 344556666667777777777777766666431 1 113445555666667777777
Q ss_pred HHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 048830 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-- 253 (551)
Q Consensus 176 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 253 (551)
..|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+......+++.++.+|.+.|++++|.+.++++.+
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7776665532 2223455556666666677777777776666543322244556666667777777777776666542
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc---cCCHHHHHHHHHHhHHhcCCCCCc
Q 048830 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH---QGLVEEGVEYFHMMVSRYNLKPGI 327 (551)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~ 327 (551)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.++ ++.|++
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCC
Confidence 44445566666666677777777777666654 5666666666655443 34666666666666654 555544
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=7e-18 Score=182.36 Aligned_cols=394 Identities=7% Similarity=-0.058 Sum_probs=301.8
Q ss_pred CccHHHHHHHHHHcCCCCChHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 048830 19 HEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN---PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95 (551)
Q Consensus 19 ~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~l 95 (551)
++...+-.+...... |+.++|.++|....+ .+...+..+...+...|++++|+.+|++.+...+ .+...+..+
T Consensus 14 ~~~~~~d~~~ia~~~--g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~l 89 (765)
T PRK10049 14 SNNQIADWLQIALWA--GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP--QNDDYQRGL 89 (765)
T ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHH
Confidence 444556667777888 999999999987653 3455689999999999999999999999988764 456667788
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChH
Q 048830 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHL 172 (551)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 172 (551)
...+...|+.++|...++++++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 888999999999999999999873 55666 88899999999999999999998875 3 4556777888888999999
Q ss_pred HHHHHHHHhhhCCcccCHH------HHHHHHHHHH-----hcCCh---HHHHHHHHHHHHh-CCCCchh-H-HHH---HH
Q 048830 173 EALKLYERMRFEDVGLDGF------TLVCLLSSCA-----HVGAL---NMGIFLHRIACEM-GFVESVY-V-GNA---LV 232 (551)
Q Consensus 173 ~A~~~~~~m~~~~~~p~~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-g~~~~~~-~-~~~---li 232 (551)
+|+..++.... .|+.. ....++.... ..+++ ++|.+.++.+.+. ...|+.. . ... .+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99999987664 33320 1111222221 12233 6778888888764 2233221 1 111 13
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC---Hh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHhccC
Q 048830 233 DMYAKCGNLDSAFCVFSRMRKRD---VL-SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP---DSITFLGLLCGCSHQG 305 (551)
Q Consensus 233 ~~y~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g 305 (551)
.++...|++++|++.|+.+.+.+ +. .-..+...|...|++++|+..|+++....... .......+..++...|
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 34467799999999999998632 11 22225778999999999999999987643111 1234566777889999
Q ss_pred CHHHHHHHHHHhHHhcC----------CCCC---ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHH
Q 048830 306 LVEEGVEYFHMMVSRYN----------LKPG---IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCK 369 (551)
Q Consensus 306 ~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~ 369 (551)
++++|..+++.+..... -.|+ ...+..+..++...|++++|+++++++... +...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999975311 0122 123456778899999999999999985443 8999999999999
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
..|++++|+..++++++++|+++..+..++..+...|++++|..+++.+.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988764
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=3.7e-18 Score=180.66 Aligned_cols=348 Identities=10% Similarity=-0.031 Sum_probs=273.6
Q ss_pred CChHHHHHHHhcCCCC------ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHH
Q 048830 36 SSLSYAQLLFNQIQNP------QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ 109 (551)
Q Consensus 36 g~~~~A~~lf~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~ 109 (551)
.+++--.-.|...++. +..-.--++..+.++|++++|+.+++..+...+. +...+..++.+....|+++.|.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHH
Confidence 4555555555554421 2222344567788999999999999999888754 3444555566677799999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCc
Q 048830 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186 (551)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 186 (551)
..++.+.+.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++.+.....
T Consensus 97 ~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 97 QVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 9999999874 55677888899999999999999999998865 3567888999999999999999999998876532
Q ss_pred ccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHH
Q 048830 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMI 263 (551)
Q Consensus 187 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 263 (551)
.+. ..+.. +..+...|++++|...++.+.+....++......+..++.+.|++++|...|++..+ .+...+..+.
T Consensus 176 ~~~-~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 176 PRG-DMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred CCH-HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 222 22222 345788999999999999988765444455556667889999999999999998764 3677888899
Q ss_pred HHHHhcCChHH----HHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHh
Q 048830 264 VGYGVHGRGDE----AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYG 338 (551)
Q Consensus 264 ~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 338 (551)
..|...|++++ |+..|++..... +.+...+..+...+...|++++|...+++..+. .| +...+..+..+|.
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 99999999986 899999998753 234567888899999999999999999998753 45 4566778899999
Q ss_pred hcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 339 RAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 339 ~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
+.|++++|.+.+++++.. +...+..+..++...|+.++|...|+++++..|++.
T Consensus 330 ~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999985544 444455566788999999999999999999998864
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1e-17 Score=177.41 Aligned_cols=326 Identities=11% Similarity=-0.014 Sum_probs=269.2
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHH
Q 048830 89 TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCY 165 (551)
Q Consensus 89 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 165 (551)
......++..+.+.|+++.|..++...+... +.+......++......|++++|...|+++.+ .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667778889999999999999998874 44455666677778889999999999999875 3566788999999
Q ss_pred HhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 048830 166 TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245 (551)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 245 (551)
...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+......+ ...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999998752 3345577788889999999999999999887765333 3333333 3478899999999
Q ss_pred HHHHhcCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHH----HHHHHHHh
Q 048830 246 CVFSRMRKR----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE----GVEYFHMM 317 (551)
Q Consensus 246 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~ 317 (551)
..++.+.+. +...+..+...+...|++++|+..|+++.... +.+...+..+...+...|++++ |...|+.+
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999987653 33445556778899999999999999999863 3345677788899999999986 89999988
Q ss_pred HHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 318 VSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 318 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
.+ +.| +...+..+..++.+.|++++|...+++++.. +...+..+..++...|++++|...++++++.+|+++.
T Consensus 277 l~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 277 LQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred Hh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 75 456 5778899999999999999999999986654 7888899999999999999999999999999999887
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 394 DYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
.+..++.++...|++++|...+++..+..
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77778999999999999999999876543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=2.8e-16 Score=169.99 Aligned_cols=369 Identities=8% Similarity=-0.067 Sum_probs=285.4
Q ss_pred CccHHHHHHHHHHcCCCCChHHHHHHHhcC---CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 048830 19 HEIHGEWLLNSYAISVSSSLSYAQLLFNQI---QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95 (551)
Q Consensus 19 ~~~~~~~li~~~~~~~~g~~~~A~~lf~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~l 95 (551)
+...+..+...+.+. |++++|..+|++. .+.+...+..+...+...|++++|+..+++.....+ .+.. +..+
T Consensus 48 ~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P--~~~~-~~~l 122 (765)
T PRK10049 48 PARGYAAVAVAYRNL--KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP--DKAN-LLAL 122 (765)
T ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHH-HHHH
Confidence 444688888999999 9999999999984 345677788899999999999999999999998864 3455 8888
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-CCh------hHHHHHHHHHH--
Q 048830 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDL------VSWNSIISCYT-- 166 (551)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~------~~~~~li~~~~-- 166 (551)
..++...|+.++|...++++.+.. +.+...+..+..++.+.|..+.|.+.++.... |+. .....++....
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 888999999999999999999974 45666777788899999999999999998776 211 11222232222
Q ss_pred ---hcCCh---HHHHHHHHHhhhC-CcccCHH-HHH----HHHHHHHhcCChHHHHHHHHHHHHhCCC-CchhHHHHHHH
Q 048830 167 ---QASFH---LEALKLYERMRFE-DVGLDGF-TLV----CLLSSCAHVGALNMGIFLHRIACEMGFV-ESVYVGNALVD 233 (551)
Q Consensus 167 ---~~g~~---~~A~~~~~~m~~~-~~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~ 233 (551)
..+++ ++|+..++.+.+. ...|+.. .+. ..+.++...|+.++|...++.+.+.+.+ |+. ....+..
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~ 280 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVAS 280 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 22234 7789899888754 2233321 111 1144556779999999999999987632 322 2233578
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCH---h
Q 048830 234 MYAKCGNLDSAFCVFSRMRKRD-------VLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-----------FHPDS---I 292 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~ 292 (551)
+|...|++++|...|+++.+.+ ...+..+..++...|++++|..+++++.... -.|+. .
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 9999999999999999976422 2345667778899999999999999998752 12332 2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHH
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCK 369 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~ 369 (551)
.+..+...+...|++++|+..++++... .+-+...+..+..++...|++++|++.+++++.. +...+..++..+.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 4456777888999999999999999753 3336788899999999999999999999986655 7788888888999
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
..|++++|+.+++++++..|+++.+..
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999986543
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=1.9e-15 Score=163.88 Aligned_cols=212 Identities=9% Similarity=0.035 Sum_probs=162.9
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQ 281 (551)
Q Consensus 204 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (551)
+++++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555454444432 3433333344445678888888888887653 3445566667778888888888888888
Q ss_pred HHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---C
Q 048830 282 MLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---D 357 (551)
Q Consensus 282 m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 357 (551)
..... |+. ..+..+.......|++++|...+++..+ +.|+...+..+..++.+.|++++|+..+++++.. +
T Consensus 568 AL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~ 642 (987)
T PRK09782 568 AEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN 642 (987)
T ss_pred HHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 87753 433 3333344455566999999999998874 4677888999999999999999999999986655 8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
...++.+..++...|+.++|+..++++++++|+++..+..++.++...|++++|...+++..+..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999999999999999999999999999987643
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=4.1e-16 Score=165.60 Aligned_cols=358 Identities=11% Similarity=-0.015 Sum_probs=262.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 135 (551)
+......+.+.|++++|+..|++.+... |+...|..+..++.+.|++++|...+...++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4456678899999999999999988754 788889999999999999999999999999864 446778888999999
Q ss_pred hCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhC---------------------------C
Q 048830 136 ANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFE---------------------------D 185 (551)
Q Consensus 136 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------~ 185 (551)
..|++++|+..|..... .+......++..+........+...+..-... .
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999999987765432 11111111111111110011111111100000 0
Q ss_pred cccCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHhC-CCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CH
Q 048830 186 VGLDG-FTLVCLLSS---CAHVGALNMGIFLHRIACEMG-FVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DV 256 (551)
Q Consensus 186 ~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g-~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~ 256 (551)
..|+. ..+..+... ....+.+++|.+.++.+++.+ ..| ....++.+...|...|++++|...|++..+ | +.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 00000 000000000 012357889999999998865 223 456788889999999999999999998764 3 45
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhH
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVD 335 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 335 (551)
.+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+..++ +.| +...+..+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~~~~la~ 441 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHHHHHHHH
Confidence 688888999999999999999999998753 33467888899999999999999999999975 455 5677888899
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH-------HHHHhhhc
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL-------LATIYACT 405 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~~ 405 (551)
++.+.|++++|+..|++++.. ++..|+.+...+...|++++|+..|+++++++|.+...+.. ....+...
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999986554 78899999999999999999999999999999875443322 12234456
Q ss_pred CChhHHHHHHHHHHhC
Q 048830 406 KDEEGVARTRKLIKSN 421 (551)
Q Consensus 406 g~~~~a~~~~~~m~~~ 421 (551)
|++++|..++++....
T Consensus 522 ~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 522 QDFIEAENLCEKALII 537 (615)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999999987664
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=6.8e-15 Score=156.46 Aligned_cols=387 Identities=11% Similarity=-0.008 Sum_probs=276.7
Q ss_pred HHHcCCCCChHHHHHHHhcCCC--CCh-hhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCCh
Q 048830 29 SYAISVSSSLSYAQLLFNQIQN--PQT-QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKAL 105 (551)
Q Consensus 29 ~~~~~~~g~~~~A~~lf~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~ 105 (551)
...+. |+++.|+..|++..+ |+. .....++..+...|+.++|+..+++...... ........+...+...|++
T Consensus 43 i~~r~--Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n--~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARA--GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMN--ISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhC--CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCCH
Confidence 34466 999999999988763 332 1233888888888999999999999872111 1222333335577788999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHh--cCChHHHHHHHHHhhh
Q 048830 106 NKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ--ASFHLEALKLYERMRF 183 (551)
Q Consensus 106 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 183 (551)
++|.++++++.+.. +.++.++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999998874 45577777888899999999999999999876433322224444444 5666669999999987
Q ss_pred CCcccCHHHHHHHHHHHHhcCChHHHHHH------------------------------------------------HHH
Q 048830 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFL------------------------------------------------HRI 215 (551)
Q Consensus 184 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~------------------------------------------------~~~ 215 (551)
.. +-+...+.....++.+.|-...|.++ ++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 63 22344444455555544443333322 222
Q ss_pred HHHh-CCCCc-hhH-HHH---HHHHHHhcCCHHHHHHHHHhcCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048830 216 ACEM-GFVES-VYV-GNA---LVDMYAKCGNLDSAFCVFSRMRKR----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285 (551)
Q Consensus 216 ~~~~-g~~~~-~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (551)
+... +..|. ... ..+ .+-++.+.|+..++++.|+.+..+ ...+--++..+|...+++++|+.+|+.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 2221 11121 111 222 244667889999999999999843 2335567889999999999999999998764
Q ss_pred C-----CCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CCCC---ccchhhhhHHHhhcCCHHHHH
Q 048830 286 G-----FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN----------LKPG---IKHYGCLVDLYGRAGKLEKAL 347 (551)
Q Consensus 286 g-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~ 347 (551)
. ..++......|..++...+++++|..+++.+.+... -.|+ ...+..++..+.-.|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3 122333457889999999999999999999976311 0122 233445678888999999999
Q ss_pred HHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 348 EVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 348 ~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.+++.... |...+..+...+...|.+..|+..++.+..++|++..+...++.++...|+|++|..+.+.....
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999984333 99999999999999999999999999999999999999999999999999999999988776543
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=1.5e-14 Score=157.02 Aligned_cols=381 Identities=11% Similarity=0.005 Sum_probs=289.1
Q ss_pred HHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHH--HHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC
Q 048830 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRA--FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103 (551)
Q Consensus 26 li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~ 103 (551)
++..+.+. +.++.|.++.+ ..+.+.. ..++. ....+...++...+..|.+..+ -+......+--...+.|
T Consensus 319 ~~~~~~~~--~~~~~~~~~~~-~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~~--~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 319 TLPVLLKE--GQYDAAQKLLA-TLPANEM---LEERYAVSVATRNKAEALRLARLLYQQEP--ANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHhc--cHHHHHHHHhc-CCCcchH---HHHHHhhccccCchhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcc
Confidence 36777888 88888887754 3322332 23332 3344667777777778877643 24444444444566789
Q ss_pred ChHHHHHHHHHHHHh-C-CCCChhHHHHHHHHHHhCCC---HHHHHHHhc-------------------------cCCC-
Q 048830 104 ALNKCQELHGFVIRS-G-YERCVVVSTNLMRGYAANGV---IEAARSVFD-------------------------NMPE- 152 (551)
Q Consensus 104 ~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~y~~~g~---~~~A~~~~~-------------------------~m~~- 152 (551)
+.++|.+++...... + -..+....+-|+..|.+.+. ..++..+-. ....
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence 999999999988762 1 12345566688899988877 333333311 1111
Q ss_pred --C--ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 048830 153 --R--DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228 (551)
Q Consensus 153 --~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 228 (551)
+ +...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...++.+... +|+...+
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 2 56678888888877 8999999988877654 477665555566667899999999999987654 3445556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC
Q 048830 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM---IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305 (551)
Q Consensus 229 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 305 (551)
..+..++.+.|+.++|.+.|++..+.++..++.. .......|++++|+..+++..+. .|+...+..+..++.+.|
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCC
Confidence 7778889999999999999998876443333333 33344559999999999999975 577888999999999999
Q ss_pred CHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHH
Q 048830 306 LVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAM 381 (551)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~ 381 (551)
++++|...+++... ..| +...+..+...+...|++++|++.+++++.. ++..+..+..++...|++++|+..+
T Consensus 624 ~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 624 NVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999974 456 5778888999999999999999999986654 8999999999999999999999999
Q ss_pred HHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 382 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
+++++++|++..+....+.......+++.|.+.+++.-..++.
T Consensus 701 ~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 701 RLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999999999988877665443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=1.3e-13 Score=146.67 Aligned_cols=364 Identities=10% Similarity=-0.034 Sum_probs=275.7
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhH-HHH--HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 048830 22 HGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAW-NSL--IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98 (551)
Q Consensus 22 ~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~-~~l--i~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~ 98 (551)
++ .++..+... |+.++|+..+++...|+...+ ..+ ...|...|++++|+++|+++.+..+. |...+..++..
T Consensus 71 v~-dll~l~~~~--G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~ 145 (822)
T PRK14574 71 VD-DWLQIAGWA--GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT--NPDLISGMIMT 145 (822)
T ss_pred HH-HHHHHHHHc--CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHH
Confidence 44 888999999 999999999999876644433 333 45788889999999999999998863 45666777888
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHH
Q 048830 99 CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHLEAL 175 (551)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~ 175 (551)
+...++.++|++.++.+.+. .|+...+..++..+...++..+|++.++++.+ | +...+..+..++.+.|-...|+
T Consensus 146 y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 146 QADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 89999999999999998875 45655565565666556777669999988864 3 3444455555555444444444
Q ss_pred HHHH------------------------------------------------Hhhh-CCcccCHH-H----HHHHHHHHH
Q 048830 176 KLYE------------------------------------------------RMRF-EDVGLDGF-T----LVCLLSSCA 201 (551)
Q Consensus 176 ~~~~------------------------------------------------~m~~-~~~~p~~~-t----~~~ll~~~~ 201 (551)
++.. .+.. .+-.|... . ..=.+-++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 3333 3222 11113221 1 123455677
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHhHHHHHHHHHHhcCCh
Q 048830 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR---------DVLSWNSMIVGYGVHGRG 272 (551)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~ 272 (551)
..++..++...++.+...+.+....+-.++.++|...+++++|..+|..+... +......|.-+|...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 88999999999999998887656778899999999999999999999997532 233356788999999999
Q ss_pred HHHHHHHHHHHHcCC-----------CCC--Hh-hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHH
Q 048830 273 DEAISFFKQMLMAGF-----------HPD--SI-TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLY 337 (551)
Q Consensus 273 ~~A~~~~~~m~~~g~-----------~p~--~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 337 (551)
++|..+++++...-. .|| -. .+..++..+.-.|++.+|++.++.+.. ..| |......+.+++
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIY 460 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 999999999997311 122 22 344566778899999999999999975 345 888899999999
Q ss_pred hhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 338 GRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
...|.+.+|++.++.+... +..+....+.++...+++++|..+.+.+++..|+++.+-
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999773322 778888888999999999999999999999999988543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=9.5e-14 Score=141.81 Aligned_cols=395 Identities=12% Similarity=0.035 Sum_probs=270.0
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCC------hhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCCh-
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQ------TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT- 89 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~- 89 (551)
..||++.|.|.+.|--. |++..+..+...+...+ ..+|-.+.++|-..|++++|...|.+..... ||.
T Consensus 267 ~~nP~~l~~LAn~fyfK--~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~---~d~~ 341 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFK--KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD---NDNF 341 (1018)
T ss_pred CCCcHHHHHHHHHHhhc--ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC---CCCc
Confidence 46888889999988887 99999988887665322 3457888899999999999999998887765 444
Q ss_pred -hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC----CHHHHHHHhccCCCC---ChhHH---
Q 048830 90 -FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG----VIEAARSVFDNMPER---DLVSW--- 158 (551)
Q Consensus 90 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~m~~~---~~~~~--- 158 (551)
..+..+...+...|+++.+...|+.+.+. .+.+..+...|...|+..+ ..+.|..++.+..++ |..+|
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~l 420 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLEL 420 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 34556788899999999999999999886 3566777777777777765 445566555544332 23333
Q ss_pred -----------------------------------HHHHHHHHhcCChHHHHHHHHHhhhC---CcccCHH------HHH
Q 048830 159 -----------------------------------NSIISCYTQASFHLEALKLYERMRFE---DVGLDGF------TLV 194 (551)
Q Consensus 159 -----------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~------t~~ 194 (551)
|.+...+...|++.+|...|.+.... ...+|.. +--
T Consensus 421 aql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 421 AQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 33333444445555555555544332 1222221 111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCC
Q 048830 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGR 271 (551)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 271 (551)
.+...+-..++.+.|.+.|..+.+.. +.-+..|-.|+.+....+...+|...+..... .|+..|+.+...+.....
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 12222334445555555555555432 11122222222222233455666666666543 566777777778888888
Q ss_pred hHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHhc------------cCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHH
Q 048830 272 GDEAISFFKQMLMA-GFHPDSITFLGLLCGCSH------------QGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLY 337 (551)
Q Consensus 272 ~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 337 (551)
+..|.+-|...... ...+|..+..+|.+.|.+ .+..++|+++|.+.++ ..| |...-+.+.-.+
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVL 656 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhh
Confidence 88888877766553 234677777778776643 2346778888887764 344 788888899999
Q ss_pred hhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc--CCCcchHHHHHHHhhhcCChhHH
Q 048830 338 GRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYACTKDEEGV 411 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a 411 (551)
+..|++.+|.++|.+ +.. +..+|-.+...|...|++-.|++.|+..++.- .+++.+...|+.++.+.|++.+|
T Consensus 657 A~kg~~~~A~dIFsq-VrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQ-VREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hhccCchHHHHHHHH-HHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999998 443 66889999999999999999999999999864 45688899999999999999999
Q ss_pred HHHHHHHHhCC
Q 048830 412 ARTRKLIKSNG 422 (551)
Q Consensus 412 ~~~~~~m~~~g 422 (551)
.+.........
T Consensus 736 k~~ll~a~~~~ 746 (1018)
T KOG2002|consen 736 KEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHhC
Confidence 99887776543
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=5.4e-13 Score=136.40 Aligned_cols=327 Identities=13% Similarity=0.044 Sum_probs=236.2
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhCCCHHHHHH
Q 048830 70 LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI----RSGYERCVVVSTNLMRGYAANGVIEAARS 145 (551)
Q Consensus 70 ~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 145 (551)
+.|..++.+..+..+ .|...|..+...+-. ++...++.++..+. ..+-++.+.+.|.+...+...|+++.|..
T Consensus 397 d~a~~~l~K~~~~~~--~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQTP--VDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHhccc--ccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 334444444333332 344444444444333 23333344444433 34555777888888999999999999999
Q ss_pred HhccCCC-------CCh------hHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH-HHHHHHHHHHhcCChHHHHH
Q 048830 146 VFDNMPE-------RDL------VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF-TLVCLLSSCAHVGALNMGIF 211 (551)
Q Consensus 146 ~~~~m~~-------~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~ 211 (551)
.|+.... +|. .+-..+...+-..++.+.|.+.|....+. .|.-+ .|..++......+...+|..
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHH
Confidence 9976542 222 12333566667778999999999999875 35544 34444423334577888998
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHHh------------cCChHH
Q 048830 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-----RDVLSWNSMIVGYGV------------HGRGDE 274 (551)
Q Consensus 212 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~------------~g~~~~ 274 (551)
.+..+.+.. ..++.+++.+.+.|.+..++..|.+-|..+.+ +|+.+.-+|...|.+ .+..++
T Consensus 552 ~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 552 LLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 888888754 55778888888899999999999997776643 455555566665432 346788
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcC
Q 048830 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354 (551)
Q Consensus 275 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 354 (551)
|+++|.+..... +-|...-+.+.-.++..|++..|..+|.+..+. ..-...+|-.+..+|..+|++-.|+++|+..+
T Consensus 631 Alq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 631 ALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888753 446678888999999999999999999999774 33455678899999999999999999999866
Q ss_pred CC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhc
Q 048830 355 PS-----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405 (551)
Q Consensus 355 ~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 405 (551)
.. +..+.+.|..++...|.+.+|...+..+..+.|.++..-..++-+..+.
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 55 8889999999999999999999999999999999998776666555443
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=1.5e-12 Score=132.31 Aligned_cols=329 Identities=15% Similarity=0.099 Sum_probs=237.2
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhcc---CCCCChhHHHHHHHHHHhcCChHHHH
Q 048830 99 CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN---MPERDLVSWNSIISCYTQASFHLEAL 175 (551)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g~~~~A~ 175 (551)
....|++++|..++.++++.. +.+...|..|..+|-..|+.+++...+-. +...|...|-.+..-..+.|+++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334488888888888888764 55677788888888888888887776533 23356677888877778888888888
Q ss_pred HHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH----HHHHHHHHhcCCHHHHHHHHHhc
Q 048830 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG----NALVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 176 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~li~~y~~~g~~~~A~~~~~~~ 251 (551)
-.|.+..+.. +++...+.--...|-+.|+...|...+.++.....+.|..-. -..+..|...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888877653 344445555566677788888888888888776533232222 23355666677777787777766
Q ss_pred CC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---------------------------CCHhhHHHHHH
Q 048830 252 RK-----RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH---------------------------PDSITFLGLLC 299 (551)
Q Consensus 252 ~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------------------------p~~~t~~~ll~ 299 (551)
.. -+...++.++..|.....++.|......+...... ++... ..+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 53 23456777888888888888888887777662222 22222 12223
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC--CccchhhhhHHHhhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCc
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~ 373 (551)
++.+....+....+.....+. ...| ++..|.-+.++|.+.|++.+|+.+|...... +..+|-.+..+|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 344555555555555555443 5444 5788999999999999999999999983333 88899999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCccCCceeE
Q 048830 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSW 431 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 431 (551)
++.|.+.|++++.+.|++..+-..|+.+|.+.|+.++|.+++..|...+....+++.|
T Consensus 465 ~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9999999999999999999999999999999999999999999887444333355555
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=5.8e-12 Score=117.69 Aligned_cols=353 Identities=12% Similarity=0.066 Sum_probs=222.1
Q ss_pred CCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHH
Q 048830 48 IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127 (551)
Q Consensus 48 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 127 (551)
..+++..+|..||.++++-...+.|.+++++......+ .+..+||.+|.+-. +...+++..+|....+.||..|+
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhH
Confidence 33456678889999999888889999999988877776 88889998887643 33447888888888889999999
Q ss_pred HHHHHHHHhCCCHHHHHHHh----ccCC----CCChhHHHHHHHHHHhcCChHH-HHHHHHHhhh----CCccc----CH
Q 048830 128 TNLMRGYAANGVIEAARSVF----DNMP----ERDLVSWNSIISCYTQASFHLE-ALKLYERMRF----EDVGL----DG 190 (551)
Q Consensus 128 ~~li~~y~~~g~~~~A~~~~----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~p----~~ 190 (551)
|+++.+.++.|.++.|.+.+ .+|+ +|...+|..+|..+.+.+++.+ |.....+... ..++| |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 99999999999887765544 4443 4788888888888888877755 3334444332 22222 44
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCHhHH
Q 048830 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMG----FVES---VYVGNALVDMYAKCGNLDSAFCVFSRMRK----RDVLSW 259 (551)
Q Consensus 191 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~ 259 (551)
.-|...+..|....+.+.|.+++..+.... +.|+ ..-|..+..+.+.....+.-...|+.|.. |+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 567788888888888888888877654321 1222 23455666777777777777778877763 566666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh
Q 048830 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339 (551)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 339 (551)
..++.+....|.++-.-++|.+|+..|..-+...- +.++..+... ...|+...-..+-....+
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~-k~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARD-KLHPLTPEREQLQVAFAK 499 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcC-CCCCCChHHHHHHHHHHH
Confidence 67777777777787777788877776532222221 2222223221 222221111111111111
Q ss_pred c-CCHHHHHHH-HhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc---CCCcc--hHHHHHHHhhhcCChh
Q 048830 340 A-GKLEKALEV-INTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE---AASAG--DYVLLATIYACTKDEE 409 (551)
Q Consensus 340 ~-g~~~~A~~~-~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~ 409 (551)
+ -++.++.+. ..+ +.. .....+..+..+.+.|..++|-+++..+.+.+ |..|. +..-+.+.-.......
T Consensus 500 ~aad~~e~~e~~~~R-~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sps 578 (625)
T KOG4422|consen 500 CAADIKEAYESQPIR-QRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPS 578 (625)
T ss_pred HHHHHHHHHHhhHHH-HHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHH
Confidence 1 011111111 111 211 56666677777777888888888887776543 33332 2334555555667777
Q ss_pred HHHHHHHHHHhCCC
Q 048830 410 GVARTRKLIKSNGI 423 (551)
Q Consensus 410 ~a~~~~~~m~~~g~ 423 (551)
.|...++.|...+.
T Consensus 579 qA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 579 QAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHHcCc
Confidence 78888887765544
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=2.3e-15 Score=143.76 Aligned_cols=254 Identities=15% Similarity=0.094 Sum_probs=106.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 048830 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS-SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239 (551)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 239 (551)
+...+.+.|++++|++++++......+|+...|..++. .+...++.+.|...++.+.+.+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 34555566666666666644333322344444443332 334456666777777766665422 45556666666 5778
Q ss_pred CHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 048830 240 NLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316 (551)
Q Consensus 240 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 316 (551)
++++|.+++...-+ +++..+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877766532 456667777888888888888888888877532 345666777788888888999999999988
Q ss_pred hHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhh---cCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 317 MVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINT---SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 317 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
.++. .| |......++..+...|+.+++.++++. ..+.|+..|..+..++...|+.++|...++++.+.+|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 8753 56 467778888888888988886666654 2344788899999999999999999999999999999999
Q ss_pred chHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 393 GDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
.....++.++...|+.++|.+++++.-
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987653
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=1.7e-10 Score=113.46 Aligned_cols=407 Identities=11% Similarity=0.038 Sum_probs=315.1
Q ss_pred cCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC------CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC
Q 048830 15 ARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ------NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD 88 (551)
Q Consensus 15 g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd 88 (551)
|+.-+..-|-.=...+-+. |..-.+..+..... +.--.+|+.-...|.+.+.++-|..+|...++..+ -+
T Consensus 474 gv~i~rdqWl~eAe~~e~a--gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp--~k 549 (913)
T KOG0495|consen 474 GVEINRDQWLKEAEACEDA--GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP--CK 549 (913)
T ss_pred ceeecHHHHHHHHHHHhhc--CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc--ch
Confidence 3344444444444444444 44444444443321 12234677777788888888888888888877654 35
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHH
Q 048830 89 TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCY 165 (551)
Q Consensus 89 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 165 (551)
...|......=-..|..+.-..++++++... +.....|-....-+-..|++..|+.++.+.-+ .+...|-+-+..-
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle 628 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLE 628 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Confidence 5566666666666788888888888888763 44555666666777888999999998887754 3556788888888
Q ss_pred HhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 048830 166 TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245 (551)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 245 (551)
..+.++++|..+|.+.... .|+...|.--++.---.+..++|.+++++.++. ++.-...|-.+...+-+.++++.|.
T Consensus 629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999988764 567666666666666678999999999988885 3444678888899999999999999
Q ss_pred HHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 048830 246 CVFSRMRK--R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322 (551)
Q Consensus 246 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 322 (551)
+.|..-.+ | .+..|-.+...--+.|+.-.|..++++....+ +-|...|...|..-.+.|+.+.|..++.+.++ .
T Consensus 706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--e 782 (913)
T KOG0495|consen 706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--E 782 (913)
T ss_pred HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 99887664 3 45678888888888899999999999988764 44667888999999999999999999999887 4
Q ss_pred CCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh
Q 048830 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402 (551)
Q Consensus 323 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 402 (551)
.+.+...|..-|.+..+.++-..+.+.+++ -+.|+.+.-+....+....+++.|...|.++++.+|++..+|..+...+
T Consensus 783 cp~sg~LWaEaI~le~~~~rkTks~DALkk-ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 783 CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE 861 (913)
T ss_pred CCccchhHHHHHHhccCcccchHHHHHHHh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence 556778888888888888887777777777 6669999889999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhCCCccCCceeEEEEC
Q 048830 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIG 435 (551)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~ 435 (551)
...|.-++-.+++.+... -.|..|..|+.+.
T Consensus 862 l~hG~eed~kev~~~c~~--~EP~hG~~W~avS 892 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCET--AEPTHGELWQAVS 892 (913)
T ss_pred HHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHh
Confidence 999999988888887765 4566677776443
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=5.3e-12 Score=126.31 Aligned_cols=284 Identities=13% Similarity=-0.002 Sum_probs=148.6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH--HHHHHHHhCCCHHHH
Q 048830 66 SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVST--NLMRGYAANGVIEAA 143 (551)
Q Consensus 66 ~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~y~~~g~~~~A 143 (551)
.|++++|.+.+......... | ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-P-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-h-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 46666666555554333211 1 112222233335556666666666666543 33332221 224455566666666
Q ss_pred HHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 048830 144 RSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220 (551)
Q Consensus 144 ~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 220 (551)
...++++.+ .+......+...|.+.|++++|++++..+.+.+..++.. ...+-
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~----------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLE----------------------- 228 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHH-----------------------
Confidence 666655543 234455555566666666666666666665544332111 11000
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 048830 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297 (551)
Q Consensus 221 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 297 (551)
..+|..++.......+.+...++++.+++ .++.....+...+...|+.++|..++++..+. .||... .+
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~ 300 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VL 300 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HH
Confidence 01222223323333344555555555542 35556666666667777777777777666653 333321 12
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHH
Q 048830 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVE 375 (551)
Q Consensus 298 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~ 375 (551)
+.+....++.+++.+..+...++ .+-|...+.++..++.+.|++++|.+.|++++.. +...+..|...+...|+.+
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 33333446667777776666543 1224445666677777777777777777765544 5555566667777777777
Q ss_pred HHHHHHHHHHhh
Q 048830 376 IGEIAMKNLVQL 387 (551)
Q Consensus 376 ~a~~~~~~~~~~ 387 (551)
+|...+++.+.+
T Consensus 379 ~A~~~~~~~l~~ 390 (398)
T PRK10747 379 EAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHhh
Confidence 777777776654
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=9.1e-13 Score=129.99 Aligned_cols=275 Identities=13% Similarity=0.039 Sum_probs=220.9
Q ss_pred CHHHHHHHhccCCC--CCh-hHHHHHHHHHHhcCChHHHHHHHHHhhhCCc--ccCHHHHHHHHHHHHhcCChHHHHHHH
Q 048830 139 VIEAARSVFDNMPE--RDL-VSWNSIISCYTQASFHLEALKLYERMRFEDV--GLDGFTLVCLLSSCAHVGALNMGIFLH 213 (551)
Q Consensus 139 ~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~ 213 (551)
...+|...|..+++ +|+ .....+..+|...+++++|.++|+..++... .-+-.+|.+.+-.+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46789999988765 344 3445678899999999999999999876421 12455787777655322 122222
Q ss_pred -HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048830 214 -RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289 (551)
Q Consensus 214 -~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (551)
+.+++. -+..+.+|.++.++|.-.++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+.... +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 223332 2445899999999999999999999999998753 567888888889999999999999998875 344
Q ss_pred CH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHH
Q 048830 290 DS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTL 364 (551)
Q Consensus 290 ~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 364 (551)
.. ..|..+...|.+.++++.|+-.|+.+. .+.| +......+...+.+.|+.|+|++++++|+.. |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 43 567778889999999999999999886 6778 6777888899999999999999999997765 66666666
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 365 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
+..+...+++++|...++++.++-|++...|..++.+|-+.|+.+.|..-|.-|.+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 77788889999999999999999999999999999999999999999999887766443
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.1e-11 Score=114.09 Aligned_cols=349 Identities=13% Similarity=0.051 Sum_probs=222.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH--HHH
Q 048830 52 QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV--STN 129 (551)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 129 (551)
|..-+-...-.+.+.|....|++.|......-+ ..-..|.-|...+. +.+.+ ..+.. |.+.|... ---
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P--~~W~AWleL~~lit---~~e~~----~~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP--WFWSAWLELSELIT---DIEIL----SILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC--cchHHHHHHHHhhc---hHHHH----HHHHh-cCcccchHHHHHH
Confidence 333333333445556666677777766654432 23333433333222 22221 11111 22221111 112
Q ss_pred HHHHHHhCCCHHHHHHHhccCCC---CChh-HHHHHHHHHHhcCChHHHHHHHHHhhhCCc--ccCHHHHHHHHHHHHhc
Q 048830 130 LMRGYAANGVIEAARSVFDNMPE---RDLV-SWNSIISCYTQASFHLEALKLYERMRFEDV--GLDGFTLVCLLSSCAHV 203 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~~~m~~---~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~ 203 (551)
+..+|....+.+++..-.+.... |+.. .-+....+.-...++++|+.+|+++.+... --|-.||+.++-+-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 33444444555555554444332 2211 122223334455677777777777766531 12455676666443222
Q ss_pred CChH-HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHH
Q 048830 204 GALN-MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFF 279 (551)
Q Consensus 204 ~~~~-~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 279 (551)
..+. .|..++ .+- +--+.+...+.+-|+-.++.++|...|++..+- ....|+.|..-|....+...|++-+
T Consensus 313 skLs~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SKLSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2211 111111 111 223456677788888888999999999987753 4578999999999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC--
Q 048830 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS-- 356 (551)
Q Consensus 280 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 356 (551)
+..++-. +-|...|-.|.++|.-.+.+.-|+-+|++.. .++| |...|.+|.++|.+.+++++|++-|.+++..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 9998853 5577889999999999999999999999885 5667 7889999999999999999999999987766
Q ss_pred -CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh-------cCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 357 -DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL-------EAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 357 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+...+..|...+-+.++.++|...|++-++. +|....+-..|+.-+.+.+++++|..+-....
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 4488889999999999999999999998873 23334455568888999999999988765543
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=1.1e-11 Score=124.07 Aligned_cols=274 Identities=12% Similarity=0.043 Sum_probs=202.1
Q ss_pred CCCHHHHHHHhccCCCC--ChhH-HHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHH--HHHHHHHhcCChHHHHH
Q 048830 137 NGVIEAARSVFDNMPER--DLVS-WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLV--CLLSSCAHVGALNMGIF 211 (551)
Q Consensus 137 ~g~~~~A~~~~~~m~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~ 211 (551)
.|+++.|++.+...++. ++.. |-.......+.|+++.|...|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 68888888888766542 2233 322334447888888898888888753 45544333 33556778888999998
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---H--------hHHHHHHHHHHhcCChHHHHHHHH
Q 048830 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD---V--------LSWNSMIVGYGVHGRGDEAISFFK 280 (551)
Q Consensus 212 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~~~~ 280 (551)
.++.+.+.. +-++.+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888865 3457788888899999999999998888887521 1 133444444445555666677777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---C
Q 048830 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---D 357 (551)
Q Consensus 281 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 357 (551)
.+... .+.+......+..++...|+.++|..+++...+. .|+... .++.+....++.+++.+.+++..+. |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 3456777888999999999999999999988753 444421 1233334569999999888764433 8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+..+..+...|...+++++|...|+++++.+|++ ..+..++.++.+.|+.++|..++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999985 5688999999999999999999986643
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=1.3e-11 Score=124.17 Aligned_cols=289 Identities=10% Similarity=-0.027 Sum_probs=144.5
Q ss_pred cCCChhHHHHHHHHHHHcCCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 048830 65 QSLSPLQAIFYYNHMLMASLSRPDT-FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143 (551)
Q Consensus 65 ~~g~~~~A~~l~~~m~~~~~~~pd~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 143 (551)
..|+++.|.+.+.+..+.. |+. ..+-....+....|+.+.|.+.+....+....+...+.-.....+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3455555555555544432 322 222233344445555555555555554432111112222234455555555555
Q ss_pred HHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 048830 144 RSVFDNMPE--R-DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220 (551)
Q Consensus 144 ~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 220 (551)
...++.+.+ | +..++..+...+.+.|++++|.+++..+.+.++.++......-..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a--------------------- 231 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA--------------------- 231 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---------------------
Confidence 555555443 2 3334445555555555555555555555554322111110000000
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH---
Q 048830 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF--- 294 (551)
Q Consensus 221 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--- 294 (551)
+..++..-......+...+.+...++ .++..+..+...+...|+.++|.+++++..+. .||....
T Consensus 232 -------~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 232 -------EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred -------HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 11111111111223334444444443 36666666777777777777777777777664 3333311
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHh--hcCCC--CHHHHHHHHHHHHh
Q 048830 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN--TSSPS--DPVLWRTLLGSCKI 370 (551)
Q Consensus 295 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~--~~~~~~~ll~~~~~ 370 (551)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+ .+... +...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 111112233466677777777666542222222455577777777777777777777 33332 55566677777777
Q ss_pred cCcHHHHHHHHHHHHh
Q 048830 371 HRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~ 386 (551)
.|+.++|.+++++.+.
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777655
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=1.1e-13 Score=132.17 Aligned_cols=255 Identities=17% Similarity=0.128 Sum_probs=82.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 048830 59 LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF-TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137 (551)
Q Consensus 59 li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 137 (551)
+...+.+.|++++|++++.+....... |+.. -|..+...+...++.+.|.+.++++...+ +.++..+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~-~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAP-PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 345566667777777776544333211 3333 33334444455666777777777776654 2244555555555 566
Q ss_pred CCHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCC-cccCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048830 138 GVIEAARSVFDNMPE--RDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLHR 214 (551)
Q Consensus 138 g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 214 (551)
+++++|.++++..-+ ++...+..++..+.+.++++++..+++...... .+++...|......+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777666655432 445556666666777777777777777655322 23455556666666667777777777777
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048830 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291 (551)
Q Consensus 215 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (551)
++++.. +.|..+.+.++..+...|+.+++.+++.... ..|+..|..+..+|...|+.++|+.+|++..... +.|.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 777654 2245566667777777777776555555443 2455666667777777777777777777766542 3355
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
.+...+..++...|+.++|.++..++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 566666667777777777776666554
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.8e-11 Score=114.23 Aligned_cols=212 Identities=12% Similarity=0.119 Sum_probs=173.9
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 048830 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISF 278 (551)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 278 (551)
-.|+.-.+.+-++.+++....+ ...|--+..+|....+.++..+.|++..+ .|+.+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 3577888888888888865433 33377778889999999999999998764 4667788778888888999999999
Q ss_pred HHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-
Q 048830 279 FKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS- 356 (551)
Q Consensus 279 ~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 356 (551)
|++.+.. .|+ ...|..+..+.-+.+.+++++..|++..++ ++.-+++|+.....+..++++++|.+.|+.+|..
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999875 444 467777777778899999999999999874 5556889999999999999999999999987765
Q ss_pred --------C--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 357 --------D--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 357 --------~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+ +.+..+++..- -.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 22223333222 34899999999999999999999999999999999999999999998754
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=4e-10 Score=110.86 Aligned_cols=389 Identities=14% Similarity=0.084 Sum_probs=305.1
Q ss_pred HHHHHHcCCCCChHHHHHHHhcC---CCCChhhHHHHHHHHHcCCChhHHHHHHHHH----HHcCCCCCChhhHHHHHHH
Q 048830 26 LLNSYAISVSSSLSYAQLLFNQI---QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM----LMASLSRPDTFTFTFTLKA 98 (551)
Q Consensus 26 li~~~~~~~~g~~~~A~~lf~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~~~~~pd~~~~~~ll~~ 98 (551)
|.-+|++. .-++.|.+++++. .+.+...|.+-...--.+|+.+...++..+- ...|+. .|...|..=..+
T Consensus 412 LwlAlarL--etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~-i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 412 LWLALARL--ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE-INRDQWLKEAEA 488 (913)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee-ecHHHHHHHHHH
Confidence 44456666 6677888887654 3567888888887778889888888877654 456776 888888888888
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHH
Q 048830 99 CERVKALNKCQELHGFVIRSGYERC--VVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLE 173 (551)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 173 (551)
|-..|.+-.+..+....+..|+... -.+|+.-...|.+.+.++-|+.+|....+ .+...|...+..--..|..++
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHH
Confidence 8888999999999988888886543 45788888889999999999999987765 456678777776677788999
Q ss_pred HHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 048830 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253 (551)
Q Consensus 174 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 253 (551)
...+|++....- +-....+.....-.-..|++..|..++..+.+... .+..+|-+-+..-....+++.|..+|.+...
T Consensus 569 l~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 999999887652 33333444444555567999999999999988753 3678888889999999999999999998763
Q ss_pred --CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccch
Q 048830 254 --RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330 (551)
Q Consensus 254 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 330 (551)
+....|.--+...-..+..++|++++++..+. -|+- ..|..+.+.+-+.++++.|...|..-.+ ..+-.+..|
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLW 722 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLW 722 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHH
Confidence 67777877777777789999999999988874 5665 5667777788888999999988876543 233357778
Q ss_pred hhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC-----------------
Q 048830 331 GCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA----------------- 390 (551)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----------------- 390 (551)
-.|.++=-+.|.+-.|..+++++.-. +...|-..+..-.+.|+.+.|..+..++++--|.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 88888888999999999999884433 8999999999999999999999999998875554
Q ss_pred -------------CcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 391 -------------SAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 391 -------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
||-....++.++....+++.|++.|.+..+.+.
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344566777888888889999999988876544
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=4.4e-12 Score=125.25 Aligned_cols=245 Identities=13% Similarity=0.071 Sum_probs=194.5
Q ss_pred CChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHH-HH
Q 048830 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF--VESVYVGNALVDMYAKCGNLDS-AF 245 (551)
Q Consensus 169 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~-A~ 245 (551)
-+..+|+..|.+... .+.-+.....-+..+|...+++++++++|+.+.+... ..+..+|.+.+--+-+.=.+.- |.
T Consensus 333 y~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 356789999988443 3444456777788999999999999999999887531 2346677776654433222211 22
Q ss_pred HHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 048830 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP-DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324 (551)
Q Consensus 246 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (551)
.+. .+....+.+|-++..+|.-+++.+.|++.|++.+.. .| ...+|+.+..-+.....+|.|...|+..+ ++.
T Consensus 412 ~Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~ 485 (638)
T KOG1126|consen 412 DLI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVD 485 (638)
T ss_pred HHH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCC
Confidence 222 223356789999999999999999999999999874 56 56888888888888899999999999775 344
Q ss_pred C-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 048830 325 P-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400 (551)
Q Consensus 325 p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 400 (551)
| +-..|..|.-.|.++++++.|+-.|+++++. +.+....+...+.+.|+.|+|+.++++++.++|.|+-.-...+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 4 2334445778899999999999999998877 77888888899999999999999999999999999999999999
Q ss_pred HhhhcCChhHHHHHHHHHHh
Q 048830 401 IYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 401 ~~~~~g~~~~a~~~~~~m~~ 420 (551)
++...+++++|...++++++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 99999999999999999986
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=1e-10 Score=117.78 Aligned_cols=250 Identities=14% Similarity=0.003 Sum_probs=152.3
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCcccCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGLDGF--TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 240 (551)
..+.+.|+++.|.+.+.+..+.. |+.. .-......+...|+++.|...++.+.+.. +-+..+...+..+|...|+
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh
Confidence 33444455555555555443321 2221 12222344444555555555555555543 2234445555555555555
Q ss_pred HHHHHHHHHhcCCC---CHhHHH----HHHHHHHhcCChHHHHHHHHHHHHcCC---CCCHhhHHHHHHHHhccCCHHHH
Q 048830 241 LDSAFCVFSRMRKR---DVLSWN----SMIVGYGVHGRGDEAISFFKQMLMAGF---HPDSITFLGLLCGCSHQGLVEEG 310 (551)
Q Consensus 241 ~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a 310 (551)
+++|.+.+....+. +...+. ....++...+..+++.+.+..+..... +.+...+..+...+...|+.++|
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 55555555555431 222121 111122233333444445555554321 13677888888999999999999
Q ss_pred HHHHHHhHHhcCCCCCccc---hhhhhHHHhhcCCHHHHHHHHhhcCCC---CH--HHHHHHHHHHHhcCcHHHHHHHHH
Q 048830 311 VEYFHMMVSRYNLKPGIKH---YGCLVDLYGRAGKLEKALEVINTSSPS---DP--VLWRTLLGSCKIHRNVEIGEIAMK 382 (551)
Q Consensus 311 ~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~ll~~~~~~g~~~~a~~~~~ 382 (551)
.+.+++..++ .|+... .....-.....++.+++.+.++++.+. |+ ....++...|.+.|++++|.+.|+
T Consensus 283 ~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 283 QEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999999864 344321 111222223457888888888775544 77 788899999999999999999999
Q ss_pred --HHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 383 --NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 383 --~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
...+..|++ ..+..++.++.+.|+.++|.+++++..
T Consensus 360 ~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 360 NVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 577777874 457799999999999999999998753
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=2.2e-11 Score=114.51 Aligned_cols=344 Identities=15% Similarity=0.095 Sum_probs=230.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC------------CC
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE------------RC 123 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~ 123 (551)
.|.+--.+.+.|.++.|+..|+...+.. ||..+-..|+-++...|+.++..+.|.+|+..... |+
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3344445788899999999999888765 77766555555555678889999999988764322 22
Q ss_pred hhHHHHHHH-----HHHhCC--CHHHHH----HHhccCCCCChhH---HH------------------HHHHHHHhcCCh
Q 048830 124 VVVSTNLMR-----GYAANG--VIEAAR----SVFDNMPERDLVS---WN------------------SIISCYTQASFH 171 (551)
Q Consensus 124 ~~~~~~li~-----~y~~~g--~~~~A~----~~~~~m~~~~~~~---~~------------------~li~~~~~~g~~ 171 (551)
....+.-+. -.-+.. +.++++ ++..-+..|+-.. |. .-...|.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 222222221 111111 122222 2222222222110 11 012357899999
Q ss_pred HHHHHHHHHhhhCCcccCHHHHH--HHHH---------------------------H-------HHhcCChHHHHHHHHH
Q 048830 172 LEALKLYERMRFEDVGLDGFTLV--CLLS---------------------------S-------CAHVGALNMGIFLHRI 215 (551)
Q Consensus 172 ~~A~~~~~~m~~~~~~p~~~t~~--~ll~---------------------------~-------~~~~~~~~~a~~~~~~ 215 (551)
+.|++++.-..+..-+.-...-+ +++. + ....|++++|...+.+
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999988775543221111111 1111 0 1124678888888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 048830 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292 (551)
Q Consensus 216 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 292 (551)
.+...-.-....|| +.-.+-+.|++++|.+.|-++. ..++...-.+...|....+..+|++++.+.... ++.|+.
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ 593 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPA 593 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHH
Confidence 77654222222333 3445677889999999887764 356666777778888888999999988776653 455667
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcC--CCCHHHHHHHHHH-H
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSS--PSDPVLWRTLLGS-C 368 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~-~ 368 (551)
.+.-|...|-+.|+-.+|.+.+-.- |..-| +.++..-|..-|....-+++|+.+|+++- ..+..-|..++.. +
T Consensus 594 ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 8888889999999999998887644 34445 88888889999999999999999999833 2288999998855 5
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
++.|++++|..+|+++.+.-|.+....-.|.+++...|.
T Consensus 671 rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 778999999999999999999999999999998888875
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.8e-10 Score=109.07 Aligned_cols=253 Identities=15% Similarity=0.112 Sum_probs=185.3
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCC
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF--VESVYVGNALVDMYAKCGN 240 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~ 240 (551)
.+|....+.+++++-.......|++-+...-+-...+.-...++++|+.+|+.+.+..+ -.|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444455666666666666666544444444444444556677777777777776532 1134455555433322222
Q ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 241 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
+.--....-.+.+--+.|.-.+..-|.-.++.++|...|++..+. .|.. ..|+.+..-|....+...|.+-++.++
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv- 391 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV- 391 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH-
Confidence 221111112222333445555667788889999999999999985 4444 567777788999999999999999997
Q ss_pred hcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 320 RYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 320 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
.+.| |-..|-.|.++|.-.+...-|+-+|+++... |...|.+|...|.+.++.++|+..|++++..+..+..+|
T Consensus 392 --di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 --DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred --hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 4566 8899999999999999999999999986654 999999999999999999999999999999988888999
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 396 VLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 396 ~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
..|+.+|.+.++.++|...+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999987654
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1e-09 Score=104.20 Aligned_cols=401 Identities=11% Similarity=0.035 Sum_probs=233.8
Q ss_pred chhhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC--CC-hhhHHHHHHHHHcCCChhHHHHHHHH
Q 048830 2 GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN--PQ-TQAWNSLIRAFAQSLSPLQAIFYYNH 78 (551)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~ 78 (551)
+|+++.+.+-+ =..++..|-..+.+=.++ ..+..|+.+|++... |- -..|-..+..=-.-|+...|.++|++
T Consensus 92 ARSv~ERALdv---d~r~itLWlkYae~Emkn--k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 92 ARSVFERALDV---DYRNITLWLKYAEFEMKN--KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHhc---ccccchHHHHHHHHHHhh--hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34555555422 234566666677777777 777777777775431 11 12344334333444666666666666
Q ss_pred HHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--C---
Q 048830 79 MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--R--- 153 (551)
Q Consensus 79 m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~--- 153 (551)
-..-. ||...|.+.++.=.+.+..+.|..+++..+- ..|++..|--....=.++|.+..|.++|+...+ .
T Consensus 167 W~~w~---P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 167 WMEWE---PDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHcCC---CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 55443 6666666666666666666666666666654 246666666666666666666666666654432 1
Q ss_pred -ChhHHHHHHHHHHhcCChHHHHHHHHHhhhC-------------------------------------------CcccC
Q 048830 154 -DLVSWNSIISCYTQASFHLEALKLYERMRFE-------------------------------------------DVGLD 189 (551)
Q Consensus 154 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------------------------------~~~p~ 189 (551)
+...+++...-=.++..++.|.-+|.-..+. .-+-|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 1112222222222223333333333222111 01223
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch--hHHHHHHHH--------HHhcCCHHHHHHHHHhcCC--C-CH
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV--YVGNALVDM--------YAKCGNLDSAFCVFSRMRK--R-DV 256 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~--------y~~~g~~~~A~~~~~~~~~--~-~~ 256 (551)
-.++--.+..-...|+.+...++++.++..- +|-. ..|...|.. -....+.+.+.++|+...+ | ..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 3444445555555677777777777766542 3311 112221111 1234566666777665543 1 22
Q ss_pred h----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Cccchh
Q 048830 257 L----SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYG 331 (551)
Q Consensus 257 ~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 331 (551)
. .|-....--.++.+...|.+++...+ |..|-..+|...|..-.+.+.++....+++..+ ...| +..+|.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~ 475 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWS 475 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHH
Confidence 2 23333334446677777777777665 457778888888887778888888888888876 3455 567777
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh---
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPS-----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA--- 403 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--- 403 (551)
.....-...|+.+.|..+|+-++.. ....|.+.|..-...|.++.|..+|+++++..+..+ ++...+..-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~ 554 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhcccc
Confidence 7777777788888888888776654 466777788777888888888888888888776644 5665554433
Q ss_pred --hcC-----------ChhHHHHHHHHHH
Q 048830 404 --CTK-----------DEEGVARTRKLIK 419 (551)
Q Consensus 404 --~~g-----------~~~~a~~~~~~m~ 419 (551)
..| ....|+++|++..
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 334 4566777777664
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=9.3e-11 Score=110.37 Aligned_cols=421 Identities=13% Similarity=0.056 Sum_probs=276.5
Q ss_pred HHHHHHHcCCCCChHHHHHHHhcCCC----CChhh-HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhh----HHHH
Q 048830 25 WLLNSYAISVSSSLSYAQLLFNQIQN----PQTQA-WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT----FTFT 95 (551)
Q Consensus 25 ~li~~~~~~~~g~~~~A~~lf~~~~~----~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~----~~~l 95 (551)
.|..-|.-. ....+|+..++-+.. ||.-. --.+-..+.+...+.+|++.|+-.+..-+. .+..+ .+.+
T Consensus 206 nlaqqy~~n--dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps-ink~~rikil~ni 282 (840)
T KOG2003|consen 206 NLAQQYEAN--DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS-INKDMRIKILNNI 282 (840)
T ss_pred HHHHHhhhh--HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc-cchhhHHHHHhhc
Confidence 344455555 667788888875543 22211 123445677888899999999776654322 33333 3344
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC----------------CChhHHH
Q 048830 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE----------------RDLVSWN 159 (551)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------------~~~~~~~ 159 (551)
.-.+.+.|+++.|...|++..+. .|+..+--.|+-++..-|+-++..+.|.+|.. |+....|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 44578899999999999999875 58887766788888888999999999988752 2333333
Q ss_pred H-----HHHHHHhcC--ChHHHHHHHHHhhhCCcccCHHH-------------HHH--------HHHHHHhcCChHHHHH
Q 048830 160 S-----IISCYTQAS--FHLEALKLYERMRFEDVGLDGFT-------------LVC--------LLSSCAHVGALNMGIF 211 (551)
Q Consensus 160 ~-----li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t-------------~~~--------ll~~~~~~~~~~~a~~ 211 (551)
. ++.-+-+.+ +.++++-.-.++...-+.||-.. +.. -..-+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 2 222222222 22333333333333333443210 110 1123567899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHH------------------------------------HhcCCHHHHHHHHHhcCCCC
Q 048830 212 LHRIACEMGFVESVYVGNALVDMY------------------------------------AKCGNLDSAFCVFSRMRKRD 255 (551)
Q Consensus 212 ~~~~~~~~g~~~~~~~~~~li~~y------------------------------------~~~g~~~~A~~~~~~~~~~~ 255 (551)
++.-..+..-.......|.|-..+ ...|++++|.+.|.+....|
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 988776654322222222222111 13578889999998888777
Q ss_pred HhHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Cccchh
Q 048830 256 VLSWNSMI---VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYG 331 (551)
Q Consensus 256 ~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 331 (551)
...-.+|. -.+-..|+.++|++.|-++..- +.-+...+..+.+.|-...+..+|++++.+.. .+.| |+.+..
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~ils 596 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAILS 596 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHHH
Confidence 65544443 3567789999999999887653 23456677778888888899999999988774 4455 788999
Q ss_pred hhhHHHhhcCCHHHHHHHHhhc---CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCCh
Q 048830 332 CLVDLYGRAGKLEKALEVINTS---SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 408 (551)
.|.++|-+.|+-..|.+..-.. .|.+..+..-|...|....-.+++...|+++--+.|+-..-...++.++-+.|++
T Consensus 597 kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 9999999999999998875431 3448888777888888888899999999999989998665556677888899999
Q ss_pred hHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHH
Q 048830 409 EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461 (551)
Q Consensus 409 ~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 461 (551)
..|..+++...++- ..+..|--. ..-++|+..-.+..+...+|+++
T Consensus 677 qka~d~yk~~hrkf-pedldclkf------lvri~~dlgl~d~key~~klek~ 722 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKF-PEDLDCLKF------LVRIAGDLGLKDAKEYADKLEKA 722 (840)
T ss_pred HHHHHHHHHHHHhC-ccchHHHHH------HHHHhccccchhHHHHHHHHHHH
Confidence 99999999886542 222222100 00123455555666666666554
No 46
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=2.8e-10 Score=106.68 Aligned_cols=349 Identities=14% Similarity=0.141 Sum_probs=240.9
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC----CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhH
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ----NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~ 92 (551)
+....++..||...||. ...+.|..++++.. +-+..+||.+|.+-. +....++..+|...... ||..|+
T Consensus 204 PKT~et~s~mI~Gl~K~--~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~-Pnl~Tf 276 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKF--SSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMT-PNLFTF 276 (625)
T ss_pred CCCchhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcC-CchHhH
Confidence 45778999999999999 99999999998765 346778898886543 23337899999999998 999999
Q ss_pred HHHHHHHhccCChHH----HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH-HHHHhccCCC------------CCh
Q 048830 93 TFTLKACERVKALNK----CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA-ARSVFDNMPE------------RDL 155 (551)
Q Consensus 93 ~~ll~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~m~~------------~~~ 155 (551)
|.++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ |..++..+.. .|.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998765 46788899999999999999999999999888754 4444443321 244
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhC---C-cccCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 048830 156 VSWNSIISCYTQASFHLEALKLYERMRFE---D-VGLDG---FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228 (551)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~-~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 228 (551)
..+..-+..|.+..+.+-|.++-.-.... . +.|+. .-|..+..+.++....+.-...|+.++-+-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 56677777777888888887775544321 1 23332 24556777888888999999999999888788888898
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh---hHHHHHHHHhccC
Q 048830 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI---TFLGLLCGCSHQG 305 (551)
Q Consensus 229 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g 305 (551)
.-++.+..-.|.++-..+++..+..- ...-+.+--++++..|......|+.. -+.....-|+ ..
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~------------ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-ad 503 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEY------------GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA-AD 503 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHh------------hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH-HH
Confidence 89999888888888888888765532 11222233345555566555555433 2333322221 11
Q ss_pred CHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHH---HHHHHHHhcCcHHHH
Q 048830 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLWR---TLLGSCKIHRNVEIG 377 (551)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~---~ll~~~~~~g~~~~a 377 (551)
-.+.....-.++. ..+......+++.-++.|.|+.++|.+++.-.... -....| -|+..-...++...|
T Consensus 504 ~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 504 IKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1111222222332 22334455778888899999999999988762122 122233 444556667777788
Q ss_pred HHHHHHHHhhc
Q 048830 378 EIAMKNLVQLE 388 (551)
Q Consensus 378 ~~~~~~~~~~~ 388 (551)
..+++-+...+
T Consensus 581 ~~~lQ~a~~~n 591 (625)
T KOG4422|consen 581 IEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHcC
Confidence 88877776554
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.5e-09 Score=103.16 Aligned_cols=384 Identities=11% Similarity=0.074 Sum_probs=291.7
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 048830 36 SSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112 (551)
Q Consensus 36 g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~ 112 (551)
+++..|+++|++.. .++...|-..+..=.++.....|..++++....-+. .|..-|. -+..=-..|++..|.++|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyK-Y~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYK-YIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHH-HHHHHHHhcccHHHHHHH
Confidence 67888999999765 467888988999999999999999999999876544 4544332 222334569999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCH
Q 048830 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190 (551)
Q Consensus 113 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 190 (551)
+.-.+ ..|+...|++.|+.=.+-..++.|..++++.. .|++.+|--....=.+.|+...|..+|....+. -.|.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence 99877 68999999999999999999999999999865 599999999998889999999999999887653 2223
Q ss_pred HHHHHHHHHH----HhcCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH--------HhcCC---C
Q 048830 191 FTLVCLLSSC----AHVGALNMGIFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVF--------SRMRK---R 254 (551)
Q Consensus 191 ~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~--------~~~~~---~ 254 (551)
..-..+..++ .....++.|..++..++..=... ....|..+...--+-|+.....+.. +.+.+ -
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 3333333344 45667888999999988863221 1456666666666667765544433 22222 2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-------hHHHHHHH---HhccCCHHHHHHHHHHhHHhcCCC
Q 048830 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI-------TFLGLLCG---CSHQGLVEEGVEYFHMMVSRYNLK 324 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~ 324 (551)
|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+ -....+++.+.++|+..++ +.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---lI 396 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---LI 396 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hc
Confidence 5678888888888889999999999999875 566331 12111112 2357889999999999875 44
Q ss_pred C-CccchhhhhHHH----hhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH
Q 048830 325 P-GIKHYGCLVDLY----GRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397 (551)
Q Consensus 325 p-~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 397 (551)
| ...|+..+--+| .++.++..|.+++..++.. -..++...|..-.+.+++|....+|++.++-+|.+-.++..
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 5 556666555555 4788999999999887766 67788888888889999999999999999999999999999
Q ss_pred HHHHhhhcCChhHHHHHHHHHHhCCCccCCce
Q 048830 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429 (551)
Q Consensus 398 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 429 (551)
.+..-...|+++.|+.+|+...+.....-|..
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 99999999999999999998877654443443
No 48
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.45 E-value=8e-10 Score=112.92 Aligned_cols=180 Identities=11% Similarity=-0.002 Sum_probs=117.8
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 048830 36 SSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112 (551)
Q Consensus 36 g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~ 112 (551)
|++++|.+++.++. +.+...|.+|...|-+.|+.++++..+-..-...+ -|...|..+..-..+.|++++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p--~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP--KDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHhcccHHHHHHHH
Confidence 78888888887765 34667788888888888888888777655544443 45567777777777888888888888
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCCh--------hHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 048830 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL--------VSWNSIISCYTQASFHLEALKLYERMRFE 184 (551)
Q Consensus 113 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (551)
.++++.. +++...+---...|-+.|+...|..-|.++.+.+. ..--.++..|...++-+.|++.+......
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 8888764 45555555566778888888888777776654221 11122345555666667777777665542
Q ss_pred -CcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 185 -DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218 (551)
Q Consensus 185 -~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (551)
+-..+..+++.++..+.....++.+.........
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 1223344555666666666666666665555444
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=3.1e-10 Score=102.80 Aligned_cols=263 Identities=15% Similarity=0.151 Sum_probs=169.7
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCCHHH
Q 048830 66 SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC---VVVSTNLMRGYAANGVIEA 142 (551)
Q Consensus 66 ~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~ 142 (551)
+.++++|.++|-+|.+... -+..+-.+|.+.|-+.|.++.|..+|+.+.++.--+. ......|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4678999999999998653 3445566788889999999999999999987421111 2244567788999999999
Q ss_pred HHHHhccCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH----HHHHHHHHHHhcCChHHHHHHHHH
Q 048830 143 ARSVFDNMPERD---LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF----TLVCLLSSCAHVGALNMGIFLHRI 215 (551)
Q Consensus 143 A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~ 215 (551)
|+.+|..+.+.+ ..+...|+..|....+|++|++.-+++.+.+-.+..+ -|.-+...+....+++.|...+..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999887633 3466778999999999999999998888766555433 233444444556677777777777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048830 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV----LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291 (551)
Q Consensus 216 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (551)
+.+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|.+.|+.++....+.++.+....++.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 76654 22344444566677777777777777777665443 24455566677777777777766666664322222
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 336 (551)
-..+...-....-.+.|..++.+-++ -+|+...+..|++.
T Consensus 285 --~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~ 324 (389)
T COG2956 285 --ELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDY 324 (389)
T ss_pred --HHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHh
Confidence 22222222222233444444333322 24666555555554
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=5.7e-10 Score=104.16 Aligned_cols=286 Identities=12% Similarity=0.004 Sum_probs=184.7
Q ss_pred cCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHH
Q 048830 65 QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144 (551)
Q Consensus 65 ~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 144 (551)
-.|++.+|+.+..+-.+.+.. ....|..-..+.-..|+.+.+-.++.++-+..-.++..++-+........|+++.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 368888888888876666542 234555666677777888888888888777543566666777777788888888887
Q ss_pred HHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 048830 145 SVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221 (551)
Q Consensus 145 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 221 (551)
.-++++.+ .++........+|.+.|++.....++.+|.+.|+--|+.. .+
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~---------- 226 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------AR---------- 226 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HH----------
Confidence 77665543 5667777788888888888888888888887775433321 00
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048830 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298 (551)
Q Consensus 222 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 298 (551)
....+|+.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ..+
T Consensus 227 -le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~ 301 (400)
T COG3071 227 -LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL 301 (400)
T ss_pred -HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH
Confidence 0122344444444444444444445555552 35666666777777888888888888887777666652 222
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~ 376 (551)
-.+.+.++.+.-++..+.-.+.++-.| ..+..|...|.+.+.+.+|.+.|+.+++. +...|+-+..++.+.|+.++
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 345566666666666666655444444 45566666666666666666666665555 66666666666666666666
Q ss_pred HHHHHHHHHh
Q 048830 377 GEIAMKNLVQ 386 (551)
Q Consensus 377 a~~~~~~~~~ 386 (551)
|....++.+.
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=6e-11 Score=109.89 Aligned_cols=196 Identities=14% Similarity=0.083 Sum_probs=158.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048830 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300 (551)
Q Consensus 224 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 300 (551)
....+..+...|...|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667778888888888888888887653 346677788888888999999999998888753 3345667777888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a 377 (551)
+...|++++|...++...+..........+..+...+...|++++|.+.+++++.. +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999988764222224456777888899999999999999885554 677888889999999999999
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
...++++.+..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999887754
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.4e-10 Score=109.85 Aligned_cols=262 Identities=13% Similarity=0.031 Sum_probs=212.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048830 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232 (551)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 232 (551)
.++...-.-..-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+++. .+....+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 455555666677778899999999999887653 455555666666788888877777776677665 345678899999
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHH
Q 048830 233 DMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309 (551)
Q Consensus 233 ~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 309 (551)
--|.-.|+.++|++.|.+...- -...|-.+...|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 9999999999999999987643 3468999999999999999999999887764 12223334445567888999999
Q ss_pred HHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC----------CHHHHHHHHHHHHhcCcHHHHH
Q 048830 310 GVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS----------DPVLWRTLLGSCKIHRNVEIGE 378 (551)
Q Consensus 310 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~ll~~~~~~g~~~~a~ 378 (551)
|.++|.+.. ++-| |+..++-+.-.....+.+.+|..+|+.++.. -..+++.|..+|++.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999885 6777 6777777877788889999999999875522 3456888999999999999999
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 379 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
..+++++.+.|.++.+|..++-+|...|+.+.|...|.+...
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987653
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=1.4e-09 Score=98.68 Aligned_cols=319 Identities=12% Similarity=0.074 Sum_probs=191.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-CChh------HHHHHHH
Q 048830 91 TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLV------SWNSIIS 163 (551)
Q Consensus 91 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~------~~~~li~ 163 (551)
+|..=++.+ -.++.++|.+.|-+|.+.. +.+..+.-+|.+.|-+.|.+|.|+++-+.+.+ ||.. +...|..
T Consensus 38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFL-LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHH-hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 343333333 2478899999999998843 44566777899999999999999999988765 5432 3455677
Q ss_pred HHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcC
Q 048830 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV----YVGNALVDMYAKCG 239 (551)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g 239 (551)
-|...|-++.|..+|..+.+.+. --.....-++..|-...+|++|..+-..+.+.+-++.. ..|.-|...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 88899999999999998877542 23345667788888888888888888888876644432 23444555555556
Q ss_pred CHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 048830 240 NLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316 (551)
Q Consensus 240 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 316 (551)
+.+.|..++.+..+. .+.+--.+...+...|++++|++.++...+.+..--..+...|..+|.+.|+.+++..++..
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666666666665432 22233334455666666666666666666653333334455555666666666666666655
Q ss_pred hHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 317 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
+.+. .++...-..+.+ .-....-.+.|...+.+-+...|.-...|.
T Consensus 275 ~~~~---~~g~~~~l~l~~-------------------------------lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r 320 (389)
T COG2956 275 AMET---NTGADAELMLAD-------------------------------LIELQEGIDAAQAYLTRQLRRKPTMRGFHR 320 (389)
T ss_pred HHHc---cCCccHHHHHHH-------------------------------HHHHhhChHHHHHHHHHHHhhCCcHHHHHH
Confidence 5432 222222222222 222223344455555555555565333333
Q ss_pred HHHHHhh--hcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCC
Q 048830 397 LLATIYA--CTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446 (551)
Q Consensus 397 ~l~~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~ 446 (551)
.+-.-.. ..|++.+...++..|....++..|.+..-.-+=+.|.|.-.+.
T Consensus 321 l~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CP 372 (389)
T COG2956 321 LMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCP 372 (389)
T ss_pred HHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeCC
Confidence 3332222 3356777788888887666666655433333334455543333
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=3.2e-10 Score=113.31 Aligned_cols=230 Identities=21% Similarity=0.206 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEM-----GF-VESV-YVGNALVDMYAKCGNLDSAFCVFSRMRK--------R 254 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~ 254 (551)
..|...+...|...|+++.|..+++..++. |. .|.. ...+.+...|...+++++|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346777889999999999999999988775 21 2332 2344577899999999999999998752 1
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 048830 255 ---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMA-----GF-HPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324 (551)
Q Consensus 255 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (551)
-..+++.|..+|...|++++|..++++..+- |. .|+. .-++.+...|...+.+++|..+++...+.+.-.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2357788888999999999999888876541 22 2333 335667778899999999999999887765422
Q ss_pred C--C----ccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh
Q 048830 325 P--G----IKHYGCLVDLYGRAGKLEKALEVINTSSPS-----------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387 (551)
Q Consensus 325 p--~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 387 (551)
| + ..+++.|..+|...|++++|++++++++.. .....+.|...|.+.++.++|..+|.....+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2 2 467899999999999999999999886643 3556778889999999999999999888764
Q ss_pred ----cCCC---cchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 388 ----EAAS---AGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 388 ----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+|+. ..+|..|+.+|...|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444 4578899999999999999999988764
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=2.2e-09 Score=100.35 Aligned_cols=276 Identities=14% Similarity=0.106 Sum_probs=198.3
Q ss_pred CCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHH
Q 048830 137 NGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213 (551)
Q Consensus 137 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 213 (551)
.|++..|+++..+-.+ ..+..|..-+.+-.+.|+.+.+-.++.+.-+..-.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5777777777766443 2333444445556667778888887777766533455556666666677777778887777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD-----------VLSWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 214 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
..+.+.+ +-++.+......+|.+.|++.....++..+.+.. ..+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777765 3356677777888888888888888888877532 246777777666666666655666665
Q ss_pred HHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhc---CCCCHH
Q 048830 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS---SPSDPV 359 (551)
Q Consensus 283 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~ 359 (551)
... .+-+...-.+++.-+.+.|+.++|.++..+..++ +.+|+. ..++ ...+-++...-++..++. .|.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 543 3445556667888889999999999999999887 666662 1111 223444444433333332 555999
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.+.+|...|.+++.+.+|...++.++...|. ...|..++.++.+.|+.++|...+++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999999999998887 77999999999999999999999987763
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=1.5e-09 Score=113.46 Aligned_cols=260 Identities=12% Similarity=-0.016 Sum_probs=186.0
Q ss_pred CChhHHHHHHHHHHh-----cCChHHHHHHHHHhhhCCcccCHH-HHHHHHHHHH---------hcCChHHHHHHHHHHH
Q 048830 153 RDLVSWNSIISCYTQ-----ASFHLEALKLYERMRFEDVGLDGF-TLVCLLSSCA---------HVGALNMGIFLHRIAC 217 (551)
Q Consensus 153 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~ 217 (551)
.+...|...+.+-.. .+.+++|+.+|++..+. .|+.. .+..+..++. ..+++++|...+++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345556566665322 13467899999998764 45443 4444444333 2244789999999998
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-h
Q 048830 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI-T 293 (551)
Q Consensus 218 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 293 (551)
+.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 875 33577888888999999999999999998764 3 4667888899999999999999999999885 44432 3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHH
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCK 369 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~ 369 (551)
+..++..+...|++++|...++++.+. ..| +...+..+..+|...|++++|...+.+..+. +...++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334444566688999999999988653 235 3455777888899999999999999984444 4555666667777
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
..| +.|...++++++..-..+.....+..+|+-.|+-+.+..+ +++.+.|
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 4788888887775433333333477788888888877766 7776543
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=1e-11 Score=83.70 Aligned_cols=50 Identities=38% Similarity=0.656 Sum_probs=47.5
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 048830 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303 (551)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 303 (551)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=9.8e-12 Score=83.84 Aligned_cols=50 Identities=32% Similarity=0.515 Sum_probs=46.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh
Q 048830 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202 (551)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 202 (551)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=9.4e-09 Score=104.80 Aligned_cols=387 Identities=15% Similarity=0.045 Sum_probs=232.5
Q ss_pred hccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCC----ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC
Q 048830 13 NKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNP----QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD 88 (551)
Q Consensus 13 ~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd 88 (551)
..|+.|+.++|.+||.-||.. |+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+. . |-
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~--gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e-p~ 82 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTK--GDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E-PL 82 (1088)
T ss_pred HhcCCCchhhHHHHHHHHccc--CCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C-Cc
Confidence 679999999999999999999 9999998 88877632 3445677777766666665544 2 66
Q ss_pred hhhHHHHHHHHhccCChHH---HHHHHHHHH----HhCC-----------------CCChhHHHHHHHHHHhCCCHHHHH
Q 048830 89 TFTFTFTLKACERVKALNK---CQELHGFVI----RSGY-----------------ERCVVVSTNLMRGYAANGVIEAAR 144 (551)
Q Consensus 89 ~~~~~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~-----------------~~~~~~~~~li~~y~~~g~~~~A~ 144 (551)
..||..|+.+|...||+.. .++.+..+. ..|+ -||.. ..+....-.|-++.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 6677777777777776543 222111111 1111 11211 1222222333344444
Q ss_pred HHhccCC---------------------------------C-CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCH
Q 048830 145 SVFDNMP---------------------------------E-RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190 (551)
Q Consensus 145 ~~~~~m~---------------------------------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 190 (551)
+++..++ + ++..+|.+.+.+-.-+|+.+.|..++.+|++.|++.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 4432222 1 56777888888888888899999999999888888888
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH-----------HHHhcCC------
Q 048830 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC-----------VFSRMRK------ 253 (551)
Q Consensus 191 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~-----------~~~~~~~------ 253 (551)
.-|..++-+ .++...+..+..-|...|+.|+..|+.-.+-...++|....+.+ +...+..
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 877777654 77777788888888888888888777655544444332211100 0000000
Q ss_pred -----------------------CCHhHHHHHHHHHH--------------------hcCC-----hHHHHHHHHHHHHc
Q 048830 254 -----------------------RDVLSWNSMIVGYG--------------------VHGR-----GDEAISFFKQMLMA 285 (551)
Q Consensus 254 -----------------------~~~~~~~~li~~~~--------------------~~g~-----~~~A~~~~~~m~~~ 285 (551)
....+|...+...- ..|+ ...+.++|.+....
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 00112222111100 0110 11122333322110
Q ss_pred ----------C-------------------CCCCHh----------------------------hHHHHHHHHhccCCHH
Q 048830 286 ----------G-------------------FHPDSI----------------------------TFLGLLCGCSHQGLVE 308 (551)
Q Consensus 286 ----------g-------------------~~p~~~----------------------------t~~~ll~~~~~~g~~~ 308 (551)
| ..||.. .-+.++..|+..-+..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 112111 1122333333333333
Q ss_pred HHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCcHHHHHHHH
Q 048830 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-------DPVLWRTLLGSCKIHRNVEIGEIAM 381 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~ 381 (551)
+++..-+.. +. -.- ...|..||+.+.....++.|..+.++ +.. |..-+..+.+...+++....+..++
T Consensus 477 K~l~~~eky-e~-~lf--~g~ya~Li~l~~~hdkle~Al~~~~e-~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 477 KILCDEEKY-ED-LLF--AGLYALLIKLMDLHDKLEYALSFVDE-IDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHH-HH-HHh--hhHHHHHhhhHHHHHHHHHHHhchhh-hcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 333322222 11 111 25688999999999999999999988 544 6667788889999999999999999
Q ss_pred HHHHhhc---CCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 382 KNLVQLE---AASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 382 ~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
+.+.+.- |.......-+.+.-+..|+.+...++.+-+...|+..
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8887743 3334566677888888999999999999998888866
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.24 E-value=2.2e-09 Score=109.25 Aligned_cols=85 Identities=18% Similarity=0.120 Sum_probs=50.3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhh
Q 048830 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333 (551)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 333 (551)
+++.++.+.+.+-.-.|+.+.|..++.+|.+.|++.+..-|..|+-+ .++...+..++..|... |+.|+.+|+.-.
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~ady 277 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADY 277 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHH
Confidence 56666666666666666666666666666666666666655555544 55555555555555443 666666666655
Q ss_pred hHHHhhcCC
Q 048830 334 VDLYGRAGK 342 (551)
Q Consensus 334 i~~~~~~g~ 342 (551)
+-.+...|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 555444444
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.1e-08 Score=95.88 Aligned_cols=339 Identities=12% Similarity=0.018 Sum_probs=215.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD-TFTFTFTLKACERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRG 133 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~ 133 (551)
+.+...-|.++|++++|++.|.+.+... || +.-|.....+|...|+++++.+--...++. .|+ +..+.--..+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 3444556788899999999999988765 77 677888888888899998888877776663 444 3345555567
Q ss_pred HHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHH---------hhhC--CcccCHHHHHHHHHHHHh
Q 048830 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER---------MRFE--DVGLDGFTLVCLLSSCAH 202 (551)
Q Consensus 134 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~--~~~p~~~t~~~ll~~~~~ 202 (551)
+-..|++++|..= +|-..+..++....-.--+.+++.+ |.+. .+-|......+....+..
T Consensus 193 ~E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 193 HEQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 7777777776532 1222223332222222222222221 1211 233444444443333311
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CCHHHHHHHHHhcC-------CCC---------HhHHHHHHHH
Q 048830 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC-GNLDSAFCVFSRMR-------KRD---------VLSWNSMIVG 265 (551)
Q Consensus 203 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~~~-------~~~---------~~~~~~li~~ 265 (551)
.-.+ .+...+...|...-..+=..|... ..+..|...+.+-. ..+ ..+...-..-
T Consensus 264 ~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 264 DPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred cccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 0000 000000001111111111111110 12233333322211 111 2222222334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHH
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLE 344 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 344 (551)
+.-.|+.-.|.+-|+..+.....++.. |.-+...|....+.++.++.|+... .+.| ++.+|..-.+++.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHHHHHH
Confidence 556789999999999999864333332 7777788999999999999999886 4666 6888999999999999999
Q ss_pred HHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 345 KALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 345 ~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+|..=|++++.. ++..|-.+.-+..+.+.+++++..|+...+.-|+.+..|...+.++..++++++|.+.++...+
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999997766 6666767777777788999999999999999999999999999999999999999999998865
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=3.4e-09 Score=98.01 Aligned_cols=192 Identities=13% Similarity=-0.021 Sum_probs=113.1
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 048830 53 TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR 132 (551)
Q Consensus 53 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 132 (551)
...+..+...+...|++++|.+.|++.....+ .+...+..+...+...|++++|.+.++...+.. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP--DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 45677777788888888888888888776653 345566677777777888888888887777654 344556666667
Q ss_pred HHHhCCCHHHHHHHhccCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChH
Q 048830 133 GYAANGVIEAARSVFDNMPE-----RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207 (551)
Q Consensus 133 ~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 207 (551)
.|...|++++|.+.|++... .....+..+...+...|++++|...|.+..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 77777777777777766543 122345555555666666666666666555432 112334444445555555555
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 048830 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249 (551)
Q Consensus 208 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 249 (551)
+|...++...+. .+.+...+..+...+...|+.++|..+++
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555554443 12223333344444444444444444433
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=5.7e-09 Score=109.24 Aligned_cols=208 Identities=11% Similarity=-0.054 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh---------ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 69 PLQAIFYYNHMLMASLSRPDTFTFTFTLKACE---------RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 69 ~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
.++|+.+|++..+..+ -+...|..+..++. ..+++++|...++++++.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 4566677776666553 12334443333322 1233566666666666543 3345555556666666666
Q ss_pred HHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 048830 140 IEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF-TLVCLLSSCAHVGALNMGIFLHRI 215 (551)
Q Consensus 140 ~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~ 215 (551)
+++|...|++..+ | +...|..+...+...|++++|+..+++..+.. |+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 6666666665543 2 23455556666666666666666666665532 2211 122223334445555666666555
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 216 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
+.+...+.++..+..+..+|...|+.++|.+.+.++... +...++.+...|...| ++|...++.+.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 554332223334455555555566666666655554431 2223333444444444 24444444443
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.1e-09 Score=99.32 Aligned_cols=230 Identities=14% Similarity=0.138 Sum_probs=157.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 048830 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238 (551)
Q Consensus 159 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 238 (551)
+.|..+|.+.|.+.+|...|+.-.+. .|-..||..+-.+|.+..+++.|..++.+-++. ++-++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777777778777777777776654 455556666777777777777777777766654 233444444555666666
Q ss_pred CCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 048830 239 GNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315 (551)
Q Consensus 239 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 315 (551)
++.++|.++++...+ .++.+...+..+|...++++-|+.+|+++...|+. +...|+.+.-+|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777766654 24444445555666667777777777777666643 44555666666666666666666555
Q ss_pred HhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 316 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
+.... .-.|+ + -..+|..|.....-.||+..|.+.|+-++..+|++..++
T Consensus 383 RAlst-at~~~------------------~-----------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 383 RALST-ATQPG------------------Q-----------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred HHHhh-ccCcc------------------h-----------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 55432 11111 1 355677777777788999999999999999999999999
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 396 VLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 396 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
+.|+-.-.+.|++++|..+++..++..
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999887643
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.5e-07 Score=88.30 Aligned_cols=365 Identities=8% Similarity=-0.020 Sum_probs=241.8
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHhcCCCC-ChhhHHHHHHHHHcCCC--hhH-------------HHHHHHHHHHcCCC
Q 048830 22 HGEWLLNSYAISVSSSLSYAQLLFNQIQNP-QTQAWNSLIRAFAQSLS--PLQ-------------AIFYYNHMLMASLS 85 (551)
Q Consensus 22 ~~~~li~~~~~~~~g~~~~A~~lf~~~~~~-~~~~~~~li~~~~~~g~--~~~-------------A~~l~~~m~~~~~~ 85 (551)
.--..+..|-.. ++-+.|.....+.++. ...--|.|+.-+-+.|- .++ |++.+.-..+.++.
T Consensus 99 ~~r~~aecy~~~--~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 99 QRRRAAECYRQI--GNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHH--ccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 444566677777 7888888888777653 33333444443333321 111 12222222222211
Q ss_pred -------------C-CChhhHHHHHHHHhc--cCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhCCCHHHHHHHhc
Q 048830 86 -------------R-PDTFTFTFTLKACER--VKALNKCQELHGFVIRS-GYERCVVVSTNLMRGYAANGVIEAARSVFD 148 (551)
Q Consensus 86 -------------~-pd~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 148 (551)
. |+..+....+.+++. .++-..+.+.+..+... -++.|+....++.++|...|+.++|+..|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 1 333344444555443 34444555555544433 367788889999999999999999999999
Q ss_pred cCCCCChhHHHH---HHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 048830 149 NMPERDLVSWNS---IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV 225 (551)
Q Consensus 149 ~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 225 (551)
+...-|+.+... -.-.+.+.|+++....+...+.... +-....|-.-+..+-..++++.|..+-++.++.. +-+.
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~ 334 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNH 334 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccc
Confidence 876544333222 2333457788888777777665432 1222233333344446677888888877777654 2234
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH-HHH
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMR--K-RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL-CGC 301 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~ 301 (551)
..+-.-...+...|++++|.-.|+... . -+..+|.-++.+|...|+..+|..+-+..... ++-+..+...+. ..|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 444444567788899999999998765 3 47889999999999999999999887766653 334555555442 223
Q ss_pred h-ccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHH
Q 048830 302 S-HQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 302 ~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a 377 (551)
. ...--++|..+++..+ .+.|+ ....+.+..++...|..+++..++++.+.. |....+.|...++..+.+++|
T Consensus 414 ~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred ccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHH
Confidence 2 2233578999888775 56775 566678888999999999999999997766 999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcch
Q 048830 378 EIAMKNLVQLEAASAGD 394 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~~~ 394 (551)
...|..++.++|++..+
T Consensus 491 m~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHhcCccchHH
Confidence 99999999999997543
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=4.1e-08 Score=99.06 Aligned_cols=396 Identities=13% Similarity=0.032 Sum_probs=263.7
Q ss_pred CCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhH
Q 048830 16 RQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN---PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92 (551)
Q Consensus 16 ~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~ 92 (551)
+.-|+.+|..|.-+..++ |+++.+-+.|++... .....|+.+-..|.-.|.-..|+.+++.-.......+|...+
T Consensus 319 ~qnd~ai~d~Lt~al~~~--g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRC--GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 456889999999999999 999999999997653 356679999999999999999999998877665331344444
Q ss_pred HHHHHHHh-ccCChHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhC-----------CCHHHHHHHhccCCC---C
Q 048830 93 TFTLKACE-RVKALNKCQELHGFVIRSG--Y--ERCVVVSTNLMRGYAAN-----------GVIEAARSVFDNMPE---R 153 (551)
Q Consensus 93 ~~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~~~~m~~---~ 153 (551)
-..-+.|. +.+.++++..+-.+++... . ...+..|..+.-+|... ....++.+.+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444454 4577888888777776621 1 12233444455455432 123456666766643 2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCchhHHHHHH
Q 048830 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM-GFVESVYVGNALV 232 (551)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li 232 (551)
|+.+--.+.--|+..++.+.|++..++..+.+-.-+...+..+.-.+...+++.+|..+.+..... |. |-.....-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhh
Confidence 333333345557788899999999999888766777778888888888889999999888776653 21 111111111
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------------------------------CC-HhHHHHHHHHHHhcCChHHHHHHHH
Q 048830 233 DMYAKCGNLDSAFCVFSRMRK-------------------------------RD-VLSWNSMIVGYGVHGRGDEAISFFK 280 (551)
Q Consensus 233 ~~y~~~g~~~~A~~~~~~~~~-------------------------------~~-~~~~~~li~~~~~~g~~~~A~~~~~ 280 (551)
..-..-++.++|......+.. .+ +.++..+..- .. -+...+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l-~a-~~~~~~~se~~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL-VA-SQLKSAGSELK 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH-HH-hhhhhcccccc
Confidence 111223444444332222110 01 1122221111 11 01000000000
Q ss_pred HHHHcCCC--CCH------hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHh
Q 048830 281 QMLMAGFH--PDS------ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVIN 351 (551)
Q Consensus 281 ~m~~~g~~--p~~------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 351 (551)
|...-+. |+. ..+......+...+..++|...+.+.. ++.| ....|......+...|.+++|.+.|.
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 1111122 221 124455567788899999998888775 4445 67778888889999999999999998
Q ss_pred hcCCC---CHHHHHHHHHHHHhcCcHHHHHH--HHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 352 TSSPS---DPVLWRTLLGSCKIHRNVEIGEI--AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 352 ~~~~~---~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
.++.. ++.+..++...+...|+...|.. ++..+++.+|.++..|..|+.++.+.|+.++|...|......
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 86654 88889999999999999888888 999999999999999999999999999999999999877653
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=3.1e-09 Score=92.18 Aligned_cols=160 Identities=14% Similarity=0.075 Sum_probs=134.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHH
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDL 336 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 336 (551)
...+.-+|.+.|+...|..-+++..+. .|+ ..++..+...|.+.|..+.|.+.|+... .+.| +..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 445667788888888888888888875 444 4677778888888888888888888886 4566 56778888888
Q ss_pred HhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHH
Q 048830 337 YGRAGKLEKALEVINTSSPS-----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411 (551)
Q Consensus 337 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 411 (551)
+|..|++++|...|++++.. -..+|..+.-+..+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++.+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 88888999999998887765 6778888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 048830 412 ARTRKLIKSNGI 423 (551)
Q Consensus 412 ~~~~~~m~~~g~ 423 (551)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877655
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=3.8e-09 Score=101.25 Aligned_cols=147 Identities=11% Similarity=-0.044 Sum_probs=71.1
Q ss_pred cCChHHHHHHHHHhhhCC-cccC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 048830 168 ASFHLEALKLYERMRFED-VGLD--GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244 (551)
Q Consensus 168 ~g~~~~A~~~~~~m~~~~-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 244 (551)
.+..+.++.-+.++.... ..|+ ...|......+...|+.++|...+..+++.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345555666665555321 1121 1234444445555566666666555555543 22345555555555566666666
Q ss_pred HHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHh
Q 048830 245 FCVFSRMRK--R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317 (551)
Q Consensus 245 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 317 (551)
.+.|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|+..
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 555555532 2 3345555555555555555555555555543 233221111111222344555555555443
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=5e-08 Score=93.57 Aligned_cols=221 Identities=7% Similarity=-0.115 Sum_probs=127.9
Q ss_pred CCCHHHHHHHhccCCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHH
Q 048830 137 NGVIEAARSVFDNMPE-------RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209 (551)
Q Consensus 137 ~g~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 209 (551)
.+..+.++.-+.++.. .....|..+...|...|++++|...|++..+.. +.+...|..+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3555666666655543 113457777777888888888888888777643 23456777777788888888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 048830 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287 (551)
Q Consensus 210 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 287 (551)
...++.+++... .+..++..+..+|...|++++|.+.|+...+ |+..............++.++|...|++.... .
T Consensus 118 ~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 118 YEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 888888877542 2356677777778888888888888877654 32211111122234566788888888665533 2
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q 048830 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367 (551)
Q Consensus 288 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~ 367 (551)
.|+... ..+. ....|+...+ +.++.+.+. +..++. + -+.....|..+...
T Consensus 196 ~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~~--~~~~~~--------------------l----~~~~~ea~~~Lg~~ 245 (296)
T PRK11189 196 DKEQWG-WNIV--EFYLGKISEE-TLMERLKAG--ATDNTE--------------------L----AERLCETYFYLAKY 245 (296)
T ss_pred CccccH-HHHH--HHHccCCCHH-HHHHHHHhc--CCCcHH--------------------H----HHHHHHHHHHHHHH
Confidence 333221 1222 2223444333 234444321 111100 0 00123456666666
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCC
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
+...|+.++|...|+++++.+|.
T Consensus 246 ~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 246 YLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCc
Confidence 66777777777777777777654
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=4.5e-07 Score=92.09 Aligned_cols=286 Identities=13% Similarity=0.037 Sum_probs=199.8
Q ss_pred HHHHHcCCCCChHHHHHHHhcCCC--CChhh-HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh-c-
Q 048830 27 LNSYAISVSSSLSYAQLLFNQIQN--PQTQA-WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE-R- 101 (551)
Q Consensus 27 i~~~~~~~~g~~~~A~~lf~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~-~- 101 (551)
...+... |++++|+..++.-.. .|..+ .......+.+.|+.++|...|..++..+ ||...|-..+..+. .
T Consensus 11 ~~il~e~--g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 11 NSILEEA--GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHC--CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhh
Confidence 4566778 999999999987543 45444 4556688999999999999999999988 67776655555444 1
Q ss_pred ----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH-HHHHHhccCCCCCh-hHHHHHHHHHHhcCChHHHH
Q 048830 102 ----VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE-AARSVFDNMPERDL-VSWNSIISCYTQASFHLEAL 175 (551)
Q Consensus 102 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~m~~~~~-~~~~~li~~~~~~g~~~~A~ 175 (551)
..+.+...++++.+...- |.......+.-.+..-..+. .+...+..+..+.+ .+++.|-..|.......-..
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 235677788888876652 33322222222222222333 34444455555554 46777777777665555556
Q ss_pred HHHHHhhhC----C----------cccCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhc
Q 048830 176 KLYERMRFE----D----------VGLDG--FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKC 238 (551)
Q Consensus 176 ~~~~~m~~~----~----------~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~ 238 (551)
+++...... + -.|.. .++..+...|-..|+.++|.++.+..++.. |+ +..|..-...|-..
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHC
Confidence 666655322 1 12333 355666777889999999999999999874 44 77888889999999
Q ss_pred CCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh--------HHHHHHHHhccCCH
Q 048830 239 GNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT--------FLGLLCGCSHQGLV 307 (551)
Q Consensus 239 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~ll~~~~~~g~~ 307 (551)
|++.+|.+.++....- |-..=+-.+..+.+.|+.++|.+++......+..|-... ......+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999988764 444556677788999999999999999988765443322 24556789999999
Q ss_pred HHHHHHHHHhHHhc
Q 048830 308 EEGVEYFHMMVSRY 321 (551)
Q Consensus 308 ~~a~~~~~~~~~~~ 321 (551)
..|++.|..+.+.+
T Consensus 322 ~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 322 GLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998886643
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.8e-08 Score=95.27 Aligned_cols=252 Identities=13% Similarity=0.069 Sum_probs=122.2
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 60 IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 60 i~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
.+-+-..+++++..++++...+..+ ++...+..=|..+...|+..+-..+=..+++. .|..+.+|-++.--|.-.|.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcC
Confidence 3344555666666666666666554 34444444444555555555544444444443 34455566666666666666
Q ss_pred HHHHHHHhccCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 140 IEAARSVFDNMPERD---LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216 (551)
Q Consensus 140 ~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 216 (551)
..+|++.|.+...-| ...|-.....|+-.|..+.|+..+...-+. ++-..--+.-+.--|.+.++.+.|.++|.++
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 666666665544322 235666666666666666666655443321 0111111122223344555666666666555
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048830 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR----------DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286 (551)
Q Consensus 217 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (551)
.... +.|+.+.+-+.-+....+.+.+|..+|+....+ -..+++.+..+|.+.+.+++|+..|++.....
T Consensus 407 ~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 LAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 5432 334555555555555555555555555543310 11223334444444444444444444444321
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHh
Q 048830 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317 (551)
Q Consensus 287 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 317 (551)
+-|..|+.++.-.|...|+++.|...|.+.
T Consensus 486 -~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 486 -PKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred -CCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 223334444444444444444444444433
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.10 E-value=3.7e-06 Score=83.51 Aligned_cols=389 Identities=12% Similarity=0.059 Sum_probs=230.8
Q ss_pred cHHHHHHHHHHcCCCCChHHHHHHHhcCC-----CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 048830 21 IHGEWLLNSYAISVSSSLSYAQLLFNQIQ-----NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95 (551)
Q Consensus 21 ~~~~~li~~~~~~~~g~~~~A~~lf~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~l 95 (551)
..|-..+....+. |++..-+..|++.. ..-...|...+......|-++-++.+|++-++..+ ..-.--
T Consensus 103 RIwl~Ylq~l~~Q--~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P-----~~~eey 175 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQ--GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP-----EAREEY 175 (835)
T ss_pred HHHHHHHHHHHhc--chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH-----HHHHHH
Confidence 3444455555566 78888888887532 12345688888888888888888888888877543 234455
Q ss_pred HHHHhccCChHHHHHHHHHHHHh------CCCCChhHHHHHHHHHHhCCCHH---HHHHHhccCCC--CC--hhHHHHHH
Q 048830 96 LKACERVKALNKCQELHGFVIRS------GYERCVVVSTNLMRGYAANGVIE---AARSVFDNMPE--RD--LVSWNSII 162 (551)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~y~~~g~~~---~A~~~~~~m~~--~~--~~~~~~li 162 (551)
+..++..+++++|.+.+...+.. ..+.+-..|..+-+..++.-+.- ....+++.+.. +| ...|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 66667778888887777665421 11333444444444444433221 12233333332 22 23466666
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCccc---------------------------------CHH-------HHHHHHH----
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGL---------------------------------DGF-------TLVCLLS---- 198 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p---------------------------------~~~-------t~~~ll~---- 198 (551)
.-|.+.|.+++|.++|++....-+.. +.. +|..+++
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 66666666666666655543221110 000 1111110
Q ss_pred --------------------HHHhcCChHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 199 --------------------SCAHVGALNMGIFLHRIACEMGFVES------VYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 199 --------------------~~~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
.-...|+..+....+.++++. +.|. ...|..+.+.|-..|+++.|..+|++..
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 001123344445556555553 1221 3467788899999999999999999987
Q ss_pred CCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----------CCHh------hHHHHHHHHhccCCHH
Q 048830 253 KRD-------VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH-----------PDSI------TFLGLLCGCSHQGLVE 308 (551)
Q Consensus 253 ~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~------t~~~ll~~~~~~g~~~ 308 (551)
+-+ ..+|-.-...-.++.+++.|+.++++.....-. +... .|...+..--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 632 245666666667888999999988877642111 1111 2333333334456777
Q ss_pred HHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHh---cCcHHHHHHH
Q 048830 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLWRTLLGSCKI---HRNVEIGEIA 380 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~---~g~~~~a~~~ 380 (551)
....+++.+..-.-..|.+ .-.....+-...-++++.++|+++++. --.+|++.+.-+.+ ....+.|..+
T Consensus 495 stk~vYdriidLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 7788888876542223332 122223344567789999999998877 45678887755543 3479999999
Q ss_pred HHHHHhhcCCCc--chHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 381 MKNLVQLEAASA--GDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 381 ~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
|+++++.-|+.. ..|...+..-.+-|....|.+++++..
T Consensus 573 FEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 573 FEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999877532 344555555566688888888888753
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=4.9e-09 Score=95.16 Aligned_cols=220 Identities=13% Similarity=-0.002 Sum_probs=110.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--CChhH-HHHHHHHHHhcCC
Q 048830 94 FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVS-WNSIISCYTQASF 170 (551)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~-~~~li~~~~~~g~ 170 (551)
.+.++|.+.|.+.+|...++..++. .|-+.+|..|-.+|.+-.+...|+.+|.+-.+ |-.+| ..-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 3444555555555555555444443 33444444455555555555555555544433 22222 2334444444555
Q ss_pred hHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048830 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250 (551)
Q Consensus 171 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 250 (551)
.++|+++|+...+.. ..+.....++...|.-.++++.|..++..+++.|.. ++..|+.+.-+|.-.+++|-+...|.+
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 555555555554432 223334444444444555555555555555555532 455555555555555555555555554
Q ss_pred cC----CCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 251 MR----KRD--VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 251 ~~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
.. .++ ...|-.+.......|+..-|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++...
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 33 122 2345555555555566666666665554432 1223455555555566666666666666553
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.07 E-value=1.5e-08 Score=101.53 Aligned_cols=229 Identities=19% Similarity=0.148 Sum_probs=152.2
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHh-----CC-CCChh-HHHHHHHHHHhCCCHHHHHHHhccCCC----------
Q 048830 90 FTFTFTLKACERVKALNKCQELHGFVIRS-----GY-ERCVV-VSTNLMRGYAANGVIEAARSVFDNMPE---------- 152 (551)
Q Consensus 90 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~---------- 152 (551)
.+...+...|...|+++.|..+++..++. |. .|.+. ..+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35566888899999999999999888765 21 22322 234466788888888888888877642
Q ss_pred C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhC-----Cc-ccCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHh---CC
Q 048830 153 R-DLVSWNSIISCYTQASFHLEALKLYERMRFE-----DV-GLDGF-TLVCLLSSCAHVGALNMGIFLHRIACEM---GF 221 (551)
Q Consensus 153 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~ 221 (551)
| -..+++.|...|.+.|++++|..+++...+. |. .|+.. -++.+...|...+.+++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 2346778888888888888887777765321 11 12222 4555666777888888888887766552 11
Q ss_pred CCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------CHhHHHHHHHHHHhcCChHHHHHHHHHHHH--
Q 048830 222 VES----VYVGNALVDMYAKCGNLDSAFCVFSRMRKR-----------DVLSWNSMIVGYGVHGRGDEAISFFKQMLM-- 284 (551)
Q Consensus 222 ~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 284 (551)
.++ ..+++.|...|.+.|++++|+++|++.... .-...+.|...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 121 356778888888888888888888776421 123556677777777777777777765432
Q ss_pred --cCC-CCCH-hhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 285 --AGF-HPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 285 --~g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
.|. .|+. .+|..|...|...|+++.|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 1232 567777777777777777777776664
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.3e-05 Score=79.09 Aligned_cols=141 Identities=22% Similarity=0.194 Sum_probs=99.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCCHHHHHHHHH--------HhHHhcCCCCCccchhhhhHHHhhc
Q 048830 271 RGDEAISFFKQMLMAGFHPDS--ITFLGLLCGCSHQGLVEEGVEYFH--------MMVSRYNLKPGIKHYGCLVDLYGRA 340 (551)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~ 340 (551)
.+.+|.+++...-+. .|+. ......+......|+++.|.+++. .+.+. +. .+.+...++.+|.+.
T Consensus 356 ~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~--~P~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 356 KHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KH--LPGTVGAIVALYYKI 430 (652)
T ss_pred HHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-cc--ChhHHHHHHHHHHhc
Confidence 466777777766654 3443 444556666788999999999998 44321 33 344566788888888
Q ss_pred CCHHHHHHHHhhcCC-------C---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhH
Q 048830 341 GKLEKALEVINTSSP-------S---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410 (551)
Q Consensus 341 g~~~~A~~~~~~~~~-------~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 410 (551)
++-+.|..++.+++. . -..+|.-+...-.++|+.++|..+++++++.+|++..+...+..+|++. +.+.
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~ek 509 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEK 509 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHH
Confidence 876666666655332 2 2334444455556789999999999999999999999999999999988 5666
Q ss_pred HHHHHHH
Q 048830 411 VARTRKL 417 (551)
Q Consensus 411 a~~~~~~ 417 (551)
|..+-+.
T Consensus 510 a~~l~k~ 516 (652)
T KOG2376|consen 510 AESLSKK 516 (652)
T ss_pred HHHHhhc
Confidence 6665443
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.01 E-value=4.1e-06 Score=83.23 Aligned_cols=191 Identities=10% Similarity=0.052 Sum_probs=112.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHh-
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS---MIVGYGVHGRGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCS- 302 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~- 302 (551)
|..+++.--..|-++....+++++.+--+.|-.. ....+-.+.-++++.+.|++-+..--.|+. ..|+..+.-+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 3334444445566666666666655422111111 112233455566777776665544334554 33444444332
Q ss_pred --ccCCHHHHHHHHHHhHHhcCCCCCc--cchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHhcCc
Q 048830 303 --HQGLVEEGVEYFHMMVSRYNLKPGI--KHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 303 --~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~ 373 (551)
....++.|..+|++.++ +.+|.. ..|-.....=-+-|....|..+++++-.. -...||..|.--...=-
T Consensus 560 rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC
Confidence 24478999999999987 666642 22222223334568888899999884433 45567777743322222
Q ss_pred HHHHHHHHHHHHhhcCCCc--chHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 374 VEIGEIAMKNLVQLEAASA--GDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+.....+|+++++.-|++. ......+.+-.+.|..+.|+.++.--.+
T Consensus 638 v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 638 VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 4456788999998877753 3445667888889999999999875544
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.8e-07 Score=90.96 Aligned_cols=370 Identities=12% Similarity=0.057 Sum_probs=249.6
Q ss_pred HHcCCCCChHHHHHHHhcC---CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhccCCh
Q 048830 30 YAISVSSSLSYAQLLFNQI---QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD-TFTFTFTLKACERVKAL 105 (551)
Q Consensus 30 ~~~~~~g~~~~A~~lf~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd-~~~~~~ll~~~~~~~~~ 105 (551)
.... |+++.|..+|... .++|-+-|+.-..+|+..|++++|++=-.+-++.. |+ ...|+....++...|++
T Consensus 12 a~s~--~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 12 AFSS--GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hccc--ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhcccH
Confidence 3445 9999999999753 35688889999999999999999998777776665 54 35788999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhcc------CCC-C------ChhHHHHHHHHHHhc----
Q 048830 106 NKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN------MPE-R------DLVSWNSIISCYTQA---- 168 (551)
Q Consensus 106 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~------m~~-~------~~~~~~~li~~~~~~---- 168 (551)
++|...|.+-++.. +.+...++.|.+++.-. . .+-+.|.. +.. | ....|..++..+-++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999988864 55677888888887111 0 11111111 000 0 112233333332211
Q ss_pred ------CChHHHHHHHHHh-----hhCC-------ccc------------C----------HHHHHHHHHHHHhcCChHH
Q 048830 169 ------SFHLEALKLYERM-----RFED-------VGL------------D----------GFTLVCLLSSCAHVGALNM 208 (551)
Q Consensus 169 ------g~~~~A~~~~~~m-----~~~~-------~~p------------~----------~~t~~~ll~~~~~~~~~~~ 208 (551)
.+...|...+... ...+ ..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 1111222211110 0001 111 0 1123456667777778888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH----------hHHHHHHHHHHhcCChHHHHHH
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV----------LSWNSMIVGYGVHGRGDEAISF 278 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~ 278 (551)
+.+-+....... .+..-++....+|...|.+.++...-+...+..- .+...+..+|...++++.|+..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 888888888765 5666777788889998888877766555433211 1223344567777889999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCc-cchhhhhHHHhhcCCHHHHHHHHhhcCCC-
Q 048830 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI-KHYGCLVDLYGRAGKLEKALEVINTSSPS- 356 (551)
Q Consensus 279 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 356 (551)
|.+....-..||.. .+....+++....+... -+.|.. .-...=...+.+.|++.+|...|.+++..
T Consensus 321 ~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 321 YQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 98876654444432 22233444444443332 334432 11122266778899999999999987766
Q ss_pred --CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 357 --DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 357 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
|...|....-+|.+.|++..|+.-.+..++++|+....|..-+.++....+|++|.+.|++..+.+
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999887654
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=2.3e-07 Score=80.81 Aligned_cols=190 Identities=16% Similarity=0.061 Sum_probs=128.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhcc
Q 048830 229 NALVDMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQ 304 (551)
Q Consensus 229 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 304 (551)
.-|.-.|...|+...|.+-+++..+. +..+|..+...|.+.|+.+.|.+.|++.... .|+ ....|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhC
Confidence 34556677777777777777776642 3456777777777777777777777777664 343 35556666666777
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHH
Q 048830 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAM 381 (551)
Q Consensus 305 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~ 381 (551)
|.+++|.+.|+.........--..+|..++-+-.++|+++.|.+.|++++.. .+...-.+.......|++-.|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 7777777777777655222223556777777777777777777777775554 5556666666677777777777777
Q ss_pred HHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 382 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
++.....+.........+.+-...|+.+.+.++-..+.+
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777776666666777777777777777777766665554
No 79
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=8.2e-08 Score=94.07 Aligned_cols=217 Identities=13% Similarity=0.068 Sum_probs=176.4
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHH
Q 048830 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAI 276 (551)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 276 (551)
+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 357788999999999988876 34688999999999999999999999998875 35667777788899999999999
Q ss_pred HHHHHHHHcCCC--------CCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHH
Q 048830 277 SFFKQMLMAGFH--------PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348 (551)
Q Consensus 277 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (551)
..+++-+....+ ++..+-.. ..+.....+....++|-.+....+..+|+.+...|.-+|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887654210 01110000 12233334556677777776666766788889999999999999999999
Q ss_pred HHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 349 VINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 349 ~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
-|+.++.. |...||-|...+....+.++|+.+|.+++++.|.-..+...|+-.|...|.+++|.+.|-...
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99987766 999999999999999999999999999999999999999999999999999999999886654
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=5e-07 Score=91.75 Aligned_cols=263 Identities=15% Similarity=0.065 Sum_probs=154.1
Q ss_pred HHhcCChHHHHHHHHHhhhCCcccCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-----
Q 048830 165 YTQASFHLEALKLYERMRFEDVGLDGF-TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC----- 238 (551)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~----- 238 (551)
+...|++++|++.+.+-.. ..+|.. .+......+.+.|+.++|..++..+++.++ .+..-|..|..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccccc
Confidence 3445555555555544222 122322 233334444555555555555555555441 2233333333333111
Q ss_pred CCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 048830 239 GNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRG-DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315 (551)
Q Consensus 239 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 315 (551)
.+.+...++|+++.. |...+...+.-.+.....+ ..+..++..+...|+++ +|+.|-..|....+.+-..+++.
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 134455555555543 1111111111111111112 23445666677777654 44444445555555555555555
Q ss_pred HhHHhc-------------CCCCCc--cchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHH
Q 048830 316 MMVSRY-------------NLKPGI--KHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 316 ~~~~~~-------------~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a 377 (551)
...... .-.|+. .++.-+.+.|-..|++++|++++++++.. .+..|..-...+...|++++|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 544321 012333 24456678888999999999999988876 677788888999999999999
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCccCC-----ceeEEE
Q 048830 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTP-----GWSWIE 433 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~-----~~s~~~ 433 (551)
...++.+.++++.|...-.-.+..+.++|+.++|.+++....+.+..+.. .|.|.+
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 99999999999998888888888899999999999999988776653332 456753
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=1.4e-07 Score=89.31 Aligned_cols=154 Identities=14% Similarity=0.072 Sum_probs=99.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----cCCH
Q 048830 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH----QGLV 307 (551)
Q Consensus 232 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~ 307 (551)
..+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. . +..+...+..++.. ...+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCchhH
Confidence 34566677777777777655 45555566677788888888888888888763 2 33444444444432 3357
Q ss_pred HHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcH-HHHHHHHHH
Q 048830 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNV-EIGEIAMKN 383 (551)
Q Consensus 308 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~-~~a~~~~~~ 383 (551)
.+|..+|+++.. ...+++.+.+.+.-+....|++++|.+++.+++.. ++.+...++......|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 888888888754 34456666777777777777777777777776655 666666666666666666 666777777
Q ss_pred HHhhcCCCc
Q 048830 384 LVQLEAASA 392 (551)
Q Consensus 384 ~~~~~p~~~ 392 (551)
+....|+.|
T Consensus 262 L~~~~p~h~ 270 (290)
T PF04733_consen 262 LKQSNPNHP 270 (290)
T ss_dssp CHHHTTTSH
T ss_pred HHHhCCCCh
Confidence 777777654
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=2.9e-06 Score=76.54 Aligned_cols=380 Identities=11% Similarity=0.044 Sum_probs=239.7
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHH-HHHH
Q 048830 23 GEWLLNSYAISVSSSLSYAQLLFNQIQN---PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF-TLKA 98 (551)
Q Consensus 23 ~~~li~~~~~~~~g~~~~A~~lf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~-ll~~ 98 (551)
+++.+--+.+. .++++|.+++..-.+ ++....+.|..+|-...++..|-.+|+++-... |...-|.. -...
T Consensus 13 ftaviy~lI~d--~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRD--ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHH--hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence 45566666777 899999999875543 366678888899999999999999999987654 55544432 2344
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHH----HHHHhCCCHHHHHHHhccCC-CCChhHHHHHHHHHHhcCChHH
Q 048830 99 CERVKALNKCQELHGFVIRSGYERCVVVSTNLM----RGYAANGVIEAARSVFDNMP-ERDLVSWNSIISCYTQASFHLE 173 (551)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~y~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~ 173 (551)
+-+.+.+..|+.+...|... ++ ..+-.+ ......+++..+..+.++.+ +.+..+.+.......+.|++++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 55677888888888777432 22 222222 22346789999999999999 4677777777777889999999
Q ss_pred HHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-------------chh--------HHHHHH
Q 048830 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE-------------SVY--------VGNALV 232 (551)
Q Consensus 174 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-------------~~~--------~~~~li 232 (551)
|++-|+...+-+---....|+..+..| +.++.+.|.+...+++++|+.. |+. .-++++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999987755444556787766544 6788999999999999887532 111 112233
Q ss_pred -------HHHHhcCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048830 233 -------DMYAKCGNLDSAFCVFSRMRK-----RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300 (551)
Q Consensus 233 -------~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 300 (551)
..+.+.|+.+.|.+.+-.|+. -|++|...+.-.- ..+++.+..+-+.-+.+.. +-...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 345678899999999988874 3667665543322 2345555555555555543 2345788888888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCC-CCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHH--HHHHhcCc--
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLK-PGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLL--GSCKIHRN-- 373 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll--~~~~~~g~-- 373 (551)
||+..-++.|-.++.+-... ... .+...|+.|=....-.-..++|.+-++. +.. ....-...+ .--+..++
T Consensus 320 yCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~-La~~l~~kLRklAi~vQe~r~~~dd~ 397 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHL-TYKFLTPYLYDLLDALITCQTAPEEAFKKLDG-LAGMLTEKLRKLAIQVQEARHNRDDE 397 (459)
T ss_pred HhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 99888888887776543211 111 1233333322222334456666665555 322 000111111 11111111
Q ss_pred -HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 374 -VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 374 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
...+.+-+++.+++- -.+...-+..|.+..++..+.++|..-.+
T Consensus 398 a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 398 AIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 223334444444443 12455667788888999999999876554
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.86 E-value=1.2e-05 Score=79.95 Aligned_cols=197 Identities=11% Similarity=-0.044 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH-HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH---
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT-FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN--- 129 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--- 129 (551)
..|..+...+...|+++.+...+.+........++..... .....+...|++++|...++...+.. +.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 3455555666666667766666666554433212222111 11223445677777777777777652 334434331
Q ss_pred HHHHHHhCCCHHHHHHHhccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCCh
Q 048830 130 LMRGYAANGVIEAARSVFDNMPE--RD-LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 206 (551)
+.......+..+.+.+.++.... |+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 12222234455555555544222 21 2233444556677777777777777776643 23344556666667777777
Q ss_pred HHHHHHHHHHHHhCCC-Cch--hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 207 NMGIFLHRIACEMGFV-ESV--YVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~-~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
++|...++...+.... ++. ..+..+...+...|++++|..+|++..
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777777766654321 221 234456667777777777777777754
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.7e-06 Score=79.84 Aligned_cols=354 Identities=10% Similarity=0.042 Sum_probs=192.2
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH--------------hC-------
Q 048830 61 RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR--------------SG------- 119 (551)
Q Consensus 61 ~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------------~g------- 119 (551)
.++.+-|++++|+..|.-+....- |+...+..+.-..--.|.+.+|.++-...-+ .+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 455666666666666666555332 4444444444333334555555444322110 00
Q ss_pred ----CCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--CChhHHHH-HHHHHHhcCChHHHHHHHHHhhhCCcccCHHH
Q 048830 120 ----YERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNS-IISCYTQASFHLEALKLYERMRFEDVGLDGFT 192 (551)
Q Consensus 120 ----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 192 (551)
+..+..-.-+|..+..-.-.+++|++++.++.. |+....|. |.-+|.+..-++-+.++++--.+. -||. |
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-t 219 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-T 219 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-H
Confidence 011112223444444444567788888877764 44444443 445667777777777766655543 2332 2
Q ss_pred HHHHHHHHHh----cCChHHHH--H----------HHHHHHHhCC------------CC-----chhHHHHHHHHHHhcC
Q 048830 193 LVCLLSSCAH----VGALNMGI--F----------LHRIACEMGF------------VE-----SVYVGNALVDMYAKCG 239 (551)
Q Consensus 193 ~~~ll~~~~~----~~~~~~a~--~----------~~~~~~~~g~------------~~-----~~~~~~~li~~y~~~g 239 (551)
+..=+.+|.. .|+..+.+ . ..+.+.+.++ -| -+..--.|+--|.+.+
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccc
Confidence 2222333321 12111111 1 1122222211 01 1122334555677888
Q ss_pred CHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhccCCHHHHH
Q 048830 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR-------GDEAISFFKQMLMAGFHPDSI-TFLGLLCGCSHQGLVEEGV 311 (551)
Q Consensus 240 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~ 311 (551)
++.+|..+..++....+.-|-.-.-.++..|+ ..-|.+.|+-.-+.+..-|.. --.++.+++.-...+++.+
T Consensus 300 dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 300 DVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred cHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 88888888887765555444433333444443 333444444433444443332 2334555566666788888
Q ss_pred HHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC----CHHHHHHHH-HHHHhcCcHHHHHHHHHHHHh
Q 048830 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS----DPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 312 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~ 386 (551)
-+++.+.. |=..-|. .--.+.++++..|.+.+|+++|-+ +.. |..+|.+++ .+|...+..+.|..+ +++
T Consensus 380 ~YlnSi~s-YF~NdD~-Fn~N~AQAk~atgny~eaEelf~~-is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk 453 (557)
T KOG3785|consen 380 TYLNSIES-YFTNDDD-FNLNLAQAKLATGNYVEAEELFIR-ISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLK 453 (557)
T ss_pred HHHHHHHH-HhcCcch-hhhHHHHHHHHhcChHHHHHHHhh-hcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHh
Confidence 88887743 2222233 333578889999999999999877 544 677777666 566777888776554 455
Q ss_pred hc-CCC-cchHHHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 387 LE-AAS-AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 387 ~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
.+ |.+ -......++-|.+.+.+--|.+.|..+...+..|
T Consensus 454 ~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 454 TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 44 332 2334466788889999888999998887755544
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.85 E-value=2.1e-05 Score=78.51 Aligned_cols=388 Identities=12% Similarity=0.048 Sum_probs=214.8
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 048830 36 SSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112 (551)
Q Consensus 36 g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~ 112 (551)
|+.++|........ ..+-+.|..+.-.+-...++++|+..|......+. -|...+.-+.-.-++.++++......
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 67777777666443 24556677776666667777777777777776653 34444444443344556666666666
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-----CChhHHHHH------HHHHHhcCChHHHHHHHHHh
Q 048830 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-----RDLVSWNSI------ISCYTQASFHLEALKLYERM 181 (551)
Q Consensus 113 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m 181 (551)
..+.+.. +.....|..+..++.-.|+...|..+.++... ++...+... .....+.|..++|++.+..-
T Consensus 133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 6655542 33445566666666677777777766654432 333333222 23345566667776666544
Q ss_pred hhCCcccCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHH-HHHHhcCCC--CH
Q 048830 182 RFEDVGLDGFTL-VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG-NALVDMYAKCGNLDSAF-CVFSRMRKR--DV 256 (551)
Q Consensus 182 ~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~-~~~~~~~~~--~~ 256 (551)
... ..|...+ ..-...+.+.+++++|..++..++... ||..-| -.+..++.+-.+.-++. .+|....+. -.
T Consensus 212 e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 212 EKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 321 1222222 223344556777777777777777653 444333 33444444333333333 455544321 00
Q ss_pred hHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHH----HHHHHHHhHHhcC---------
Q 048830 257 LSWNSMIVGYGVHG-RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE----GVEYFHMMVSRYN--------- 322 (551)
Q Consensus 257 ~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~--------- 322 (551)
..-.-+--...... -.+..-.++..+...|++|-...+.+| |-.....+- +..+...+ ...|
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L-~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSL-SGTGMFNFLDDGK 363 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhc-ccccCCCcccccc
Confidence 00000000011111 223334456666677766533333333 322221111 11111111 1111
Q ss_pred -CCCCcc--chhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHH---HHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 323 -LKPGIK--HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL---LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 323 -~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
-+|... ++-.++..|-+.|+++.|..+++.++...+..+... ...+...|++++|...++.+.+++..|...-.
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INs 443 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINS 443 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHH
Confidence 134433 345678888999999999999999887744444333 47788899999999999999999866554443
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHhCCCcc-----CCceeEEEE
Q 048830 397 LLATIYACTKDEEGVARTRKLIKSNGIKT-----TPGWSWIEI 434 (551)
Q Consensus 397 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~~s~~~~ 434 (551)
--+.-..++++.++|.++.....+.|..- +..|.|..+
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 45666778899999999998887766421 235777644
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.83 E-value=5.5e-06 Score=93.12 Aligned_cols=323 Identities=12% Similarity=0.002 Sum_probs=205.9
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC----C----C--h--hHHHHHHHHHHh
Q 048830 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE----R----D--L--VSWNSIISCYTQ 167 (551)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~----~--~--~~~~~li~~~~~ 167 (551)
...|+++.+...+..+.......++.........+...|++++|...++.... . + . .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34566666666655442111122233334455666788999998888765421 1 1 1 112223345667
Q ss_pred cCChHHHHHHHHHhhhCCcccCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHhc
Q 048830 168 ASFHLEALKLYERMRFEDVGLDG----FTLVCLLSSCAHVGALNMGIFLHRIACEM----GF-VESVYVGNALVDMYAKC 238 (551)
Q Consensus 168 ~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~~~ 238 (551)
.|++++|...+++....-...+. .....+...+...|++++|...+...... |. .........+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999887653111121 23344555667899999999998887753 21 11123456677788899
Q ss_pred CCHHHHHHHHHhcCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HhhHHHHHHHHhc
Q 048830 239 GNLDSAFCVFSRMRK-------R----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMA--GFHPD--SITFLGLLCGCSH 303 (551)
Q Consensus 239 g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~~~~ 303 (551)
|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998876542 1 1223445556677789999999999887653 11222 2344455667788
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCccch-----hhhhHHHhhcCCHHHHHHHHhhcCCC---CH----HHHHHHHHHHHhc
Q 048830 304 QGLVEEGVEYFHMMVSRYNLKPGIKHY-----GCLVDLYGRAGKLEKALEVINTSSPS---DP----VLWRTLLGSCKIH 371 (551)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~ll~~~~~~ 371 (551)
.|+.+.|...++..............+ ...+..+...|+.+.|..++...... .. ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988875421111111111 11224455689999999998773332 11 1244566788889
Q ss_pred CcHHHHHHHHHHHHhhcC------CCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 372 RNVEIGEIAMKNLVQLEA------ASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
|+.++|...+++++.... ....++..++.++...|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999987531 123467788999999999999999998887643
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=1.6e-05 Score=89.32 Aligned_cols=361 Identities=9% Similarity=-0.077 Sum_probs=227.3
Q ss_pred HHHHHHHcCCCCChHHHHHHHhcCCCCChhh--HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcc
Q 048830 25 WLLNSYAISVSSSLSYAQLLFNQIQNPQTQA--WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102 (551)
Q Consensus 25 ~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~ 102 (551)
.....|... |++.+|..........+... .......+...|++..+...++.+...... .+..........+...
T Consensus 346 raa~~~~~~--g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~-~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 346 AAAEAWLAQ--GFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLL-ENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHC--CCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHh-cCcchHHHHHHHHHHC
Confidence 334445556 77777766665554432211 111223455677877777777665322111 2222233344445677
Q ss_pred CChHHHHHHHHHHHHhCC------CCC--hhHHHHHHHHHHhCCCHHHHHHHhccCCC----CCh----hHHHHHHHHHH
Q 048830 103 KALNKCQELHGFVIRSGY------ERC--VVVSTNLMRGYAANGVIEAARSVFDNMPE----RDL----VSWNSIISCYT 166 (551)
Q Consensus 103 ~~~~~a~~~~~~~~~~g~------~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~ 166 (551)
|+++++...+......-- .+. ......+...+...|++++|...+++..+ .+. .+++.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 899999999888765311 111 12223344566789999999998876532 222 34566777788
Q ss_pred hcCChHHHHHHHHHhhhC----Cc-ccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----CCC--C-chhHHHHHHHH
Q 048830 167 QASFHLEALKLYERMRFE----DV-GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM----GFV--E-SVYVGNALVDM 234 (551)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~----~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~ 234 (551)
..|++++|...+.+.... |- .+...++..+...+...|+++.|...+++.... +.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 899999999999887642 11 111234455666778899999999998877653 221 1 23345566677
Q ss_pred HHhcCCHHHHHHHHHhcCC------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHhhH-----HHHHHH
Q 048830 235 YAKCGNLDSAFCVFSRMRK------R--DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH-PDSITF-----LGLLCG 300 (551)
Q Consensus 235 y~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~~ 300 (551)
+...|++++|...+++... + ....+..+...+...|+.++|...+.+....... .....+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 8888999999999887642 1 1334555667788999999999999888652111 111111 112234
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCcc----chhhhhHHHhhcCCHHHHHHHHhhcCCC---------CHHHHHHHHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIK----HYGCLVDLYGRAGKLEKALEVINTSSPS---------DPVLWRTLLGS 367 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~ll~~ 367 (551)
+...|+.+.|..++...... . ..... .+..+..++...|+.++|...+++++.. ...+...+..+
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 45578999999998765421 1 11111 1345677788999999999999885543 23456666788
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCC
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
+...|+.++|...+.+++++...
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999999997643
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1e-05 Score=76.36 Aligned_cols=173 Identities=10% Similarity=0.003 Sum_probs=81.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhh-HHHhh-cC
Q 048830 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV-DLYGR-AG 341 (551)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g 341 (551)
..+...|++++|.-.|+..+... +.+...|..|+.+|...|.+.+|.-.-+...+ -+..+..+.+.+. ..+.. ..
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCch
Confidence 34444555555555555544421 22334555555555555555555444444332 1222333333221 11111 11
Q ss_pred CHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 342 KLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 342 ~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
--++|.+++++++.. -....+.+...|...|..+.+..++++.+...|+ ...+..|+..+...+.+.+|...|...
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 124455555554443 2223333444455555555555555555554444 334555555555555555555555444
Q ss_pred HhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 048830 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAK 466 (551)
Q Consensus 419 ~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 466 (551)
. ...|+.+...+-+..+.+.|+
T Consensus 498 L--------------------------r~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 498 L--------------------------RQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred H--------------------------hcCccchHHHHHHHHHHhccC
Confidence 3 334556666667777776665
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.82 E-value=7.7e-06 Score=81.20 Aligned_cols=298 Identities=9% Similarity=0.012 Sum_probs=138.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCCh-hHHHHHHHHHHhCCCHHHHHHHhccCCC--C-ChhHHHHHHHHH
Q 048830 91 TFTFTLKACERVKALNKCQELHGFVIRSGY-ERCV-VVSTNLMRGYAANGVIEAARSVFDNMPE--R-DLVSWNSIISCY 165 (551)
Q Consensus 91 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~ 165 (551)
.|..+...+...++.+.+...+....+... .++. .........+...|++++|.+.+++..+ | |...++. ...+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 445555555556666666555555544321 1121 1122223345566777777766665443 2 2233332 1122
Q ss_pred Hh----cCChHHHHHHHHHhhhCCcccCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048830 166 TQ----ASFHLEALKLYERMRFEDVGLDG-FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240 (551)
Q Consensus 166 ~~----~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 240 (551)
.. .+....+.+.+.. .....|+. .....+...+...|++++|...++...+.. +.+...+..+...|...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22 2333334443333 11122222 222334445556666666666666666643 2234455556666666666
Q ss_pred HHHHHHHHHhcCC-----CCH--hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhhH-H--HHHHHHhccCCHHH
Q 048830 241 LDSAFCVFSRMRK-----RDV--LSWNSMIVGYGVHGRGDEAISFFKQMLMAGF-HPDSITF-L--GLLCGCSHQGLVEE 309 (551)
Q Consensus 241 ~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~~~~~~g~~~~ 309 (551)
+++|...+++..+ ++. ..|..+...+...|++++|..++++...... .+..... . .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 6666666665443 111 1233455556666666666666666543211 0111111 0 11111222222222
Q ss_pred HHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh
Q 048830 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387 (551)
Q Consensus 310 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 387 (551)
+.++ +++........+. ..........++...|+.+.|...++.+...
T Consensus 244 ~~~w------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 244 GDRW------------------------------EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHH------------------------------HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2111 1111111000000 1111123444555566666666666665542
Q ss_pred c-C--------CCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 388 E-A--------ASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 388 ~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
. . .........+.++...|++++|.+.+.......
T Consensus 294 ~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 294 ASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 1 124455677888899999999999998876543
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=7.5e-08 Score=91.05 Aligned_cols=241 Identities=9% Similarity=-0.039 Sum_probs=158.6
Q ss_pred HHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 048830 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243 (551)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 243 (551)
-+.-.|++..++.-.+ .....-..+..+...+.+++...|+.+.+. ..+.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445677777776555 222222223344555667777777765433 3332322 5555555555444433355566
Q ss_pred HHHHHHhcC-CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 244 AFCVFSRMR-KR----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 244 A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
+..-+++.. ++ +..........+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665543 22 2222222234566789999999988652 345666678889999999999999999995
Q ss_pred HhcCCCCCccchhhhhHH----HhhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 319 SRYNLKPGIKHYGCLVDL----YGRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 319 ~~~~~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
.+..|. +...|..+ +.-.+.+.+|..+|++ +.. ++.+.+.+..+....|++++|+.+++++++.+|.
T Consensus 159 ---~~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~E-l~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 159 ---QIDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEE-LSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp ---CCSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHH-HHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred ---hcCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 344443 33334443 3334579999999998 433 7888888999999999999999999999999999
Q ss_pred CcchHHHHHHHhhhcCCh-hHHHHHHHHHHh
Q 048830 391 SAGDYVLLATIYACTKDE-EGVARTRKLIKS 420 (551)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 420 (551)
++.+...++-+....|+. +.+.+++.+++.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999999999999999998 667788888775
No 91
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=2.2e-05 Score=81.84 Aligned_cols=320 Identities=11% Similarity=0.063 Sum_probs=190.2
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180 (551)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (551)
..+-+++|..+|.+. ..+....+.|+. .-+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+
T Consensus 1060 ~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred hhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh
Confidence 334445555554432 233333333333 235556666665555544 5688899988889999988888744
Q ss_pred hhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------
Q 048830 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK------- 253 (551)
Q Consensus 181 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------- 253 (551)
. -|...|..++..+.+.|.+++-.+.+..+.+..-.|.. -+.||-+|++.+++.+-+++...-..
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVG 1201 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHh
Confidence 3 35668888999999999999988888888776655543 46788889988888877665532110
Q ss_pred ----------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHh
Q 048830 254 ----------------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317 (551)
Q Consensus 254 ----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 317 (551)
.++..|..+...+...|+++.|...-++. -+..||..+-.+|...+.+..|. |
T Consensus 1202 drcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----i 1270 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----I 1270 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----h
Confidence 13445556666666666666666554432 24567777777777666554432 2
Q ss_pred HHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcch
Q 048830 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394 (551)
Q Consensus 318 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 394 (551)
.- ..+.....-..-|+..|...|.+++-+.+++.++.. ....|+-|.-.|.+.. +++-.+.++-.... ..
T Consensus 1271 CG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vN 1343 (1666)
T KOG0985|consen 1271 CG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VN 1343 (1666)
T ss_pred cC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cc
Confidence 11 122234445667788888888888888888776555 5666666666666553 44444444433321 11
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 048830 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAK 466 (551)
Q Consensus 395 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 466 (551)
.--+++++..+..|.+..-++..-.+.+-. ...+++- -...+.|.+..+|..++..+.--.+
T Consensus 1344 ipKviRA~eqahlW~ElvfLY~~y~eyDNA---a~tmm~h-------~teaw~~~~FKdii~kVaNvElyYk 1405 (1666)
T KOG0985|consen 1344 IPKVIRAAEQAHLWSELVFLYDKYEEYDNA---ALTMMEH-------PTEAWDHGQFKDIITKVANVELYYK 1405 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---HHHHHhC-------ChhhhhhhhHHHHHHHHhhHHHHHH
Confidence 224566777777777777666554432110 0001000 0123457777777776665544443
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=1.4e-05 Score=73.61 Aligned_cols=328 Identities=11% Similarity=0.068 Sum_probs=183.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH-HHHHHHHHH
Q 048830 58 SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF-TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV-STNLMRGYA 135 (551)
Q Consensus 58 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~ 135 (551)
-+-..+.-.|++..|+.-|...++.+ |+.+ ++-.-...|...|+-.-|..=+..+++. .||-.. ..--...+.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d---p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD---PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC---chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 45566677788888888888877644 3322 3333344566777777777777777663 566432 112234567
Q ss_pred hCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215 (551)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 215 (551)
+.|.++.|..-|+.+.+.++.- +....++.+.-..++-. .....+..+...|+...|......
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHHHH
Confidence 8888888888887776532200 00001111110011111 111122233345555555555555
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 048830 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292 (551)
Q Consensus 216 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 292 (551)
+++.. +.|...+..-..+|...|++..|+.-+.... ..+..+.--+-..+-..|+.+.++...++..+ +.||..
T Consensus 181 llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 181 LLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 55542 3455555555666666666666655444332 23444444455555566666666666655554 345542
Q ss_pred hHHHH-------------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----ccchhhhhHHHhhcCCHHHHHHHHhhcC
Q 048830 293 TFLGL-------------LCGCSHQGLVEEGVEYFHMMVSRYNLKPG-----IKHYGCLVDLYGRAGKLEKALEVINTSS 354 (551)
Q Consensus 293 t~~~l-------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 354 (551)
..... +......+.+.++....+...+. .|. ...+..+-.++...|++.+|++.-.+++
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 21110 11123345566666666655542 333 3445556677778888888887766644
Q ss_pred CC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 355 PS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 355 ~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
.. |+.++.--..+|.....++.|+.-|+++.+.++++..+-.- .+.|.++.++..+++.
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG----------le~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG----------LERAKRLKKQSGKRDY 396 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHhccchH
Confidence 44 67777777888888889999999999999998887544332 3555555555544443
No 93
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.77 E-value=0.00011 Score=74.96 Aligned_cols=99 Identities=13% Similarity=0.192 Sum_probs=60.1
Q ss_pred CCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHH-HHH
Q 048830 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT-LVC 195 (551)
Q Consensus 120 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ 195 (551)
+.-|+.+|..|.-+..++|+++.+.+.|++... .....|+.+...|...|.-..|+.+.+.-....-.|+..+ +..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455777777777788888888888888877653 3445677788888888887778887776554332343332 222
Q ss_pred HHHHHH-hcCChHHHHHHHHHHHH
Q 048830 196 LLSSCA-HVGALNMGIFLHRIACE 218 (551)
Q Consensus 196 ll~~~~-~~~~~~~a~~~~~~~~~ 218 (551)
.-..|. +.+..+++..+-.+++.
T Consensus 399 asklc~e~l~~~eegldYA~kai~ 422 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAIS 422 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHH
Confidence 222222 33444554444444433
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2.4e-05 Score=79.87 Aligned_cols=356 Identities=15% Similarity=0.098 Sum_probs=228.6
Q ss_pred CCccHHHHHHH--HHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcC--------CCCC
Q 048830 18 AHEIHGEWLLN--SYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS--------LSRP 87 (551)
Q Consensus 18 ~~~~~~~~li~--~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--------~~~p 87 (551)
-|..+-.++++ .|..- |+++.|.+-.+.+. +-..|..|.+.+.+..+.+-|.-.+-.|.... ...|
T Consensus 724 Cd~~TRkaml~FSfyvti--G~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTI--GSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cCHHHHHhhhceeEEEEe--ccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 36666677765 46666 99999988777664 46789999999999999988887777664321 1113
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-CChhHHHHHHHHHH
Q 048830 88 DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVSWNSIISCYT 166 (551)
Q Consensus 88 d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~ 166 (551)
+ .+=..+.-.....|.+++|+.+|.+..+.. .|=..|...|.+++|.++-+.-.. .=-.||..-..-+-
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 2 222222233457899999999999987743 355678889999999988654322 11235655666666
Q ss_pred hcCChHHHHHHHHHhhhC----------Cc---------ccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 048830 167 QASFHLEALKLYERMRFE----------DV---------GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227 (551)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~----------~~---------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 227 (551)
..++.+.|++.|++.... .. ..|...|.-...-+-..|..+.|..+|..+..
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 678888888888764211 10 12333333333444456666777666665543
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh-----
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS----- 302 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----- 302 (551)
|-+++...|-.|+.++|-++-++- .|..+.-.+...|-..|++.+|+..|-+.+. |...|+.|-
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMK 1009 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHH
Confidence 344556666678888877776653 3666667788899999999999999987653 223333222
Q ss_pred ----------ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh------------cCCC--CH
Q 048830 303 ----------HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT------------SSPS--DP 358 (551)
Q Consensus 303 ----------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~------------~~~~--~~ 358 (551)
...+.-.|-++|++. |.. ...-+.+|-++|.+.+|+++--+ -+.. |+
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 222344455555544 211 22345678888888888876311 1222 77
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHh------h----------------cCCC---------cchHHHHHHHhhhcCC
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQ------L----------------EAAS---------AGDYVLLATIYACTKD 407 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~----------------~p~~---------~~~~~~l~~~~~~~g~ 407 (551)
...+--...+..+.++++|..++-.+.+ + -|.. ......++..+.++|.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~ 1160 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA 1160 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 7777777888888888888877655432 1 1211 2256789999999999
Q ss_pred hhHHHHHHH
Q 048830 408 EEGVARTRK 416 (551)
Q Consensus 408 ~~~a~~~~~ 416 (551)
+..|.+-|.
T Consensus 1161 Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1161 YHAATKKFT 1169 (1416)
T ss_pred hHHHHHHHh
Confidence 888877653
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.75 E-value=9.4e-06 Score=81.71 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHhHHHHHHHHHHhcC
Q 048830 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR--DVLSWNSMIVGYGVHG 270 (551)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g 270 (551)
|..+...|+..|+++.|+++|.+. ..++--|++|.+.|++++|.++-.+...| .+..|-+-..-+-.+|
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhc
Confidence 333444444444444444444321 12233344455555555555444444333 2223333333344444
Q ss_pred ChHHHHHHH
Q 048830 271 RGDEAISFF 279 (551)
Q Consensus 271 ~~~~A~~~~ 279 (551)
++.+|.++|
T Consensus 839 kf~eaeqly 847 (1636)
T KOG3616|consen 839 KFAEAEQLY 847 (1636)
T ss_pred chhhhhhee
Confidence 444444444
No 96
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=9.7e-07 Score=94.58 Aligned_cols=199 Identities=13% Similarity=0.071 Sum_probs=172.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 048830 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR--------DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294 (551)
Q Consensus 223 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 294 (551)
.....|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|+++.+.- -....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 34677888888899999999999999987642 34579999988888898889999999998742 223567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHH
Q 048830 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLWRTLLGSCK 369 (551)
Q Consensus 295 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~ 369 (551)
..|..-|.+.+..++|.++++.|.++++ .....|...++.+.+..+-++|..++.++|.. ......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8899999999999999999999999877 66778999999999999999999999987765 5666677777888
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
++|+.+.+..+|+..+.-.|.....|..++++-.+.|..+.++.+|++....++.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 99999999999999999999999999999999999999999999999999887755
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.6e-06 Score=78.23 Aligned_cols=304 Identities=13% Similarity=0.060 Sum_probs=166.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--CChhHHHH-HHHHHHhc
Q 048830 92 FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNS-IISCYTQA 168 (551)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~~ 168 (551)
+.+++..+.+..+++.|.+++..-.+.. +.+..-.+.|..+|....++..|-..++++.. |...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3344444445555666666555544432 22444455555666666666666666665543 22222211 23344456
Q ss_pred CChHHHHHHHHHhhhCCcccCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 048830 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSS--CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246 (551)
Q Consensus 169 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 246 (551)
+.+..|+++...|... |+...-..-+.+ ..+.+++..+..+.++.-. ..+..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHH
Confidence 6677777776666542 221111111111 1233444455554444322 1233444444455567777777777
Q ss_pred HHHhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHH----HHHHHHhccCCHHHHHHHHHHhH
Q 048830 247 VFSRMRK----RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL----GLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 247 ~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
-|+...+ ....+||.-+. ..+.|+++.|+++..++++.|++-.+..-. -.+.+ ...|+. ..+....+
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~Sal 240 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQSAL 240 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHHHHH
Confidence 7776654 34456665443 345677788888888777776542211000 00000 000000 00000000
Q ss_pred HhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 319 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
+..++.-...+.+.|+++.|.+-+.. ||. |+++...+.-.- ..+++..+.+-++-+++++|-.+
T Consensus 241 --------~eAfNLKaAIeyq~~n~eAA~eaLtD-mPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ 310 (459)
T KOG4340|consen 241 --------VEAFNLKAAIEYQLRNYEAAQEALTD-MPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPP 310 (459)
T ss_pred --------HHHhhhhhhhhhhcccHHHHHHHhhc-CCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCCh
Confidence 11223333446688999999999999 776 788877665332 34556667777788888999888
Q ss_pred chHHHHHHHhhhcCChhHHHHHHHH
Q 048830 393 GDYVLLATIYACTKDEEGVARTRKL 417 (551)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~~ 417 (551)
.++..+.-.|++..-++-|..++-+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 9999999999999888888887643
No 98
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.69 E-value=6.4e-05 Score=75.16 Aligned_cols=351 Identities=13% Similarity=0.052 Sum_probs=216.9
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 048830 63 FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142 (551)
Q Consensus 63 ~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 142 (551)
+..-|+-++|....+.-...++ .+.+.|..+.-.+-...++++|...|..+++.+ +.|..++.-|.-.-++-|+++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhh
Confidence 3345777888888877776655 466677777766777788888888888888865 5566677666666667777776
Q ss_pred HHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCC-cccCHHHHHHHHH------HHHhcCChHHHHHH
Q 048830 143 ARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLS------SCAHVGALNMGIFL 212 (551)
Q Consensus 143 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~------~~~~~~~~~~a~~~ 212 (551)
....-.+..+ .....|...+.++.-.|++..|..+.++..+.. -.|+...|.-... .....|.++.|.+.
T Consensus 128 ~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 128 YLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 6555554443 345678888888888899999999888887654 2466555543332 33456777777766
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHH-HHHHHhcCChHHHH-HHHHHHHHcCCC
Q 048830 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSM-IVGYGVHGRGDEAI-SFFKQMLMAGFH 288 (551)
Q Consensus 213 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~g~~ 288 (551)
....... +......-.+-.+.+.+.+++++|..++..+.. ||-..|.-. ..++..--+.-+++ .+|....+. .
T Consensus 208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y 284 (700)
T KOG1156|consen 208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--Y 284 (700)
T ss_pred HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--C
Confidence 5544332 122233344556778888999999999998875 444444443 34443333333444 566655543 2
Q ss_pred CCHhhHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHH---H-HHHHHhh-----cCC---
Q 048830 289 PDSITFLGL-LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE---K-ALEVINT-----SSP--- 355 (551)
Q Consensus 289 p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~---~-A~~~~~~-----~~~--- 355 (551)
|....-..+ ++........+..-.++..+.++ |+++- +..+...|-.-...+ + +..+... ++.
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 221111111 11111222233444555555554 65442 222333332211111 1 0111111 111
Q ss_pred -----C-CHHHHHH--HHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 356 -----S-DPVLWRT--LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 356 -----~-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
. .+..|.. +...+-..|+++.|+...+.++..-|.-+..|..-++++...|..++|..++++.++.+.
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 1 3444544 557788899999999999999999999899999999999999999999999999887554
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=1.6e-06 Score=77.51 Aligned_cols=146 Identities=11% Similarity=0.065 Sum_probs=109.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCC
Q 048830 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342 (551)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 342 (551)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..|...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3456777777665443322221 11 0122356667777777766542 23367888888899999999
Q ss_pred HHHHHHHHhhcCCC---CHHHHHHHHHHH-HhcCc--HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHH
Q 048830 343 LEKALEVINTSSPS---DPVLWRTLLGSC-KIHRN--VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 343 ~~~A~~~~~~~~~~---~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
+++|...|++++.. +...+..+..++ ...|+ .++|..+++++++.+|+++.++..++..+...|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998886655 888888888864 67676 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 048830 417 LIKSNG 422 (551)
Q Consensus 417 ~m~~~g 422 (551)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 997643
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=3.1e-06 Score=78.57 Aligned_cols=179 Identities=12% Similarity=0.025 Sum_probs=124.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh----h
Q 048830 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD-V---LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI----T 293 (551)
Q Consensus 224 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 293 (551)
....+..++..|.+.|++++|...|+++.+ |+ . .+|..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 455667778888888999999998887754 22 2 46677788888889999999999988875 33322 3
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCCc-cchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHH
Q 048830 294 FLGLLCGCSHQ--------GLVEEGVEYFHMMVSRYNLKPGI-KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364 (551)
Q Consensus 294 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 364 (551)
+..+..++.+. |+.++|.+.|+.+.+. .|+. ..+..+... +..... .. .....+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~---~~-------~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNR---LA-------GKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHH---HH-------HHHHHH
Confidence 44455555544 6778888888888754 3432 122211111 001100 00 112245
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 365 LGSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 365 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
...+...|+++.|...++++++..|++ +..+..++.+|...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667888999999999999999997765 468899999999999999999999888654
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=3.8e-08 Score=59.57 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=29.6
Q ss_pred ccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC
Q 048830 14 KARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ 49 (551)
Q Consensus 14 ~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~ 49 (551)
.|+.||.++||+||+.|++. |++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~--G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKA--GRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHC--CCHHHHHHHHHhCc
Confidence 37889999999999999998 99999999998884
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.60 E-value=0.0001 Score=74.49 Aligned_cols=260 Identities=15% Similarity=0.128 Sum_probs=185.4
Q ss_pred HHHHHhCCCHHHHHHHhccCCCCChh--HHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHH
Q 048830 131 MRGYAANGVIEAARSVFDNMPERDLV--SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208 (551)
Q Consensus 131 i~~y~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 208 (551)
+.+-.....+.+|+.+++.+..+++. -|..+..-|...|+++.|.++|.+.- .+.-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34455667888888888888876554 37778889999999999999996542 35567788999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (551)
|.++-.+. .|.......|-+-..-.-+.|++.+|+++|-.+..|+. .|..|-++|..+..+++.++-.
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h----- 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHH----- 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhC-----
Confidence 98876554 34555666777777778889999999999999888875 4778999999999998887643
Q ss_pred CCH--hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-C-----HHH
Q 048830 289 PDS--ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-D-----PVL 360 (551)
Q Consensus 289 p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-----~~~ 360 (551)
||. .|-..+..-+-..|++..|...|-+.- -|.+-+++|-..+.+++|.++-+. -.. | ...
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakt-egg~n~~k~v~fl 946 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKT-EGGANAEKHVAFL 946 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhc-cccccHHHHHHHH
Confidence 333 466667777888999999998877663 267788899999999999888764 221 2 222
Q ss_pred HHH------HHHHHHhcCcHHHHHHHH------HHHHh---h--cCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 361 WRT------LLGSCKIHRNVEIGEIAM------KNLVQ---L--EAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 361 ~~~------ll~~~~~~g~~~~a~~~~------~~~~~---~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
|.. ....+.++|-++.|.... +-++. + ...-+..+..++..+...|++++|-+-+-+..+.+
T Consensus 947 waksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 947 WAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 221 122334445444444321 11111 1 12235677888888999999999999887766543
No 103
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.00019 Score=71.15 Aligned_cols=340 Identities=12% Similarity=0.044 Sum_probs=193.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 60 IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 60 i~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
++-+.++|++++|+....+++..++ -|...+..=+-+..+.+.+++|+.+.+.-.. ...+..-+-.-..+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~p--dd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVP--DDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCC--CcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 4566778888888888888887663 3445555556667778888888744332111 01111111122334457888
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG-FTLVCLLSSCAHVGALNMGIFLHRIACE 218 (551)
Q Consensus 140 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (551)
.|+|...++....-|..+...-...+-+.|++++|+.+|+.+.+.+..--. ..-..++.+-+.. .+. .+..
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----LLQS 166 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----HHHh
Confidence 999999888655555545555566777889999999999998776543211 1222222211111 010 1122
Q ss_pred hCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCC-----Hh-----HHHHHHHHHHhcCChHHHHHH
Q 048830 219 MGFVES--VYVGNALVDMYAKCGNLDSAFCVFSRMR--------KRD-----VL-----SWNSMIVGYGVHGRGDEAISF 278 (551)
Q Consensus 219 ~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~~ 278 (551)
....|+ -..+-.....+...|++.+|+++++... ..| +. .---|.-.+...|+-++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 222221 1222223455678899999999988772 111 11 122344567788999999999
Q ss_pred HHHHHHcCCCCCHhh----HHHHHHHHhccCCH-H-HHHHHHHHhHHhc----------CCCCCccchhhhhHHHhhcCC
Q 048830 279 FKQMLMAGFHPDSIT----FLGLLCGCSHQGLV-E-EGVEYFHMMVSRY----------NLKPGIKHYGCLVDLYGRAGK 342 (551)
Q Consensus 279 ~~~m~~~g~~p~~~t----~~~ll~~~~~~g~~-~-~a~~~~~~~~~~~----------~~~p~~~~~~~li~~~~~~g~ 342 (551)
+...+... .+|... -|.|+ +...-.++ + .++..++...... .-.-....-++++.+| .+.
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk 322 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNK 322 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh
Confidence 99988874 445422 22222 22221111 1 1111121111000 0001111223344444 455
Q ss_pred HHHHHHHHhhcCCC--CHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhhcCCC-cchHHHHHHHhhhcCChhHHHHHHH
Q 048830 343 LEKALEVINTSSPS--DPVLWRTLLGSCKI--HRNVEIGEIAMKNLVQLEAAS-AGDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 343 ~~~A~~~~~~~~~~--~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
.+.+.++-.+ +|. -...+..++..+.+ ......+..++....+..|.+ ..+...++......|+|+.|.+++.
T Consensus 323 ~~q~r~~~a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 MDQVRELSAS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6778888777 776 34555666654422 224777888888888888886 5566778888999999999999998
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=7.6e-07 Score=75.24 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=82.0
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC
Q 048830 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP 355 (551)
Q Consensus 277 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 355 (551)
.+|++..+ +.|+. +..+..++...|++++|...|+.+.. +.| +...|..+..++.+.|++++|...|++++.
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444 23443 33455666777777777777777653 344 566667777777777777777777777554
Q ss_pred C---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 356 S---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 356 ~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
. ++..|..+..++...|+.++|...+++++++.|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4 77777778888888888888888888888888888777766665543
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.59 E-value=0.00057 Score=63.36 Aligned_cols=304 Identities=9% Similarity=0.039 Sum_probs=186.0
Q ss_pred HHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHH---HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH-HHHHHHhc
Q 048830 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI---RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT-FTLKACER 101 (551)
Q Consensus 26 li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~-~ll~~~~~ 101 (551)
|-+.+.-. |++.+|+.-|....+-|...|-++. ..|..-|+...|+.=|.+.++.. ||-..-. .-...+.+
T Consensus 44 lGk~lla~--~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK---pDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 44 LGKELLAR--GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK---PDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHh--hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC---ccHHHHHHHhchhhhh
Confidence 33444445 8888999988888777777777765 57888899999999999888764 7754321 22345678
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHh
Q 048830 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181 (551)
Q Consensus 102 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (551)
.|.+++|..=|+.+++.. |+..+ ...++.+.--.++-..+ ...+..+.-.|+...|+.....+
T Consensus 119 ~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHH
Confidence 999999999999998864 32211 11222222112221111 12233344455555666555555
Q ss_pred hhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHh----
Q 048830 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL---- 257 (551)
Q Consensus 182 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---- 257 (551)
.+.. +-|...|..-..+|...|.+..|..-+..+.+.. ..++...--+-..+...|+.+.+....++..+-|+.
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 5432 2344444555555555666655555555544433 123334444455555666666666665555432211
Q ss_pred --HHHHH---------HHHHHhcCChHHHHHHHHHHHHcCCCCCHhh---HHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 048830 258 --SWNSM---------IVGYGVHGRGDEAISFFKQMLMAGFHPDSIT---FLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323 (551)
Q Consensus 258 --~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (551)
.|-.+ +......++|.++++..+...+.......++ +..+-.++...+.+.+|++...+.+ .+
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~ 336 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DI 336 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hc
Confidence 11111 2234567888888888888777532212233 4445566778899999999998886 67
Q ss_pred CCC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCC
Q 048830 324 KPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPS 356 (551)
Q Consensus 324 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 356 (551)
.|+ +.++.--.++|.-...+++|+.-|+.+...
T Consensus 337 d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 337 DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 775 888888888999889999999999885543
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.57 E-value=2.3e-05 Score=81.75 Aligned_cols=176 Identities=13% Similarity=-0.006 Sum_probs=118.4
Q ss_pred hhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHH
Q 048830 4 KKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80 (551)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 80 (551)
.+|..+.+++... .=...|..|-..|... .+...|.+.|+..- ..+..++......|++..+++.|..+.-..-
T Consensus 477 al~ali~alrld~-~~apaf~~LG~iYrd~--~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 477 ALHALIRALRLDV-SLAPAFAFLGQIYRDS--DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHhccc-chhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 4566665443321 1123677777888877 78888999998654 4577788889999999999999988833222
Q ss_pred HcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHH
Q 048830 81 MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160 (551)
Q Consensus 81 ~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~ 160 (551)
+......-...|....-.+...++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|++...-++..|..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 221100111223333344667788888888888888764 5577889999999999999999999998877643333221
Q ss_pred ---HHHHHHhcCChHHHHHHHHHhhh
Q 048830 161 ---IISCYTQASFHLEALKLYERMRF 183 (551)
Q Consensus 161 ---li~~~~~~g~~~~A~~~~~~m~~ 183 (551)
....-+..|.+.+|+..+.....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22234567889999888877643
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=1.1e-07 Score=57.59 Aligned_cols=33 Identities=39% Similarity=0.643 Sum_probs=25.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 220 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777888888888888888888888877774
No 108
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=1.9e-05 Score=75.77 Aligned_cols=76 Identities=11% Similarity=0.009 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCCC---CHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC----------
Q 048830 344 EKALEVINTSSPS---DPVLWRTLLGSCKIH----RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK---------- 406 (551)
Q Consensus 344 ~~A~~~~~~~~~~---~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------- 406 (551)
+++.++..+++.. |...|+.+...+... ++..+|...+.+++..+|.++.+...|+.+|+...
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 3455555443433 888898888888773 34566888888888888999999999999998743
Q ss_pred --------ChhHHHHHHHHHH
Q 048830 407 --------DEEGVARTRKLIK 419 (551)
Q Consensus 407 --------~~~~a~~~~~~m~ 419 (551)
..++|.++++.+.
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hccccccccHHHHHHHHHHHH
Confidence 2367888888774
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.55 E-value=5.3e-06 Score=87.62 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=105.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Cccchhh
Q 048830 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGC 332 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 332 (551)
++..+-.|.....+.|..++|+.+++...+. .||. .....+...+.+.+.+++|....++... ..| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 4677777888888888888888888888874 6665 4566777788888888888888888764 455 4666777
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 397 (551)
+..++...|++++|.++|++++.. +...|.++..++...|+.++|...|+++++...+....|..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 788888888888888888886633 67888888888888888888888888888876544444443
No 110
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=0.00015 Score=67.31 Aligned_cols=213 Identities=15% Similarity=0.090 Sum_probs=137.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHH-----HHHHHHHhcCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHH
Q 048830 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGN-----ALVDMYAKCGNLDSAFCVFSRMRK-----RDVLSWNSMIVGYG 267 (551)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-----~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~ 267 (551)
--|.+.+++.+|..+...+.- ..|...+.. ++..-......+.-|.+.|+-+-+ ..+..-.+|.+.+.
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred eeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 345677788777776654321 112222222 222222222345667777776543 23334556777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CCccchh-hhhHHHhhcCCHHH
Q 048830 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK-PGIKHYG-CLVDLYGRAGKLEK 345 (551)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~-~li~~~~~~g~~~~ 345 (551)
-..++++.+-+++....--.. |...-..+.++.+..|.+.+|+++|-.+. +.+ .|..+|. .|..+|.+++.++-
T Consensus 371 L~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 788899999888887765333 33333457889999999999999998774 333 3455555 56688999999999
Q ss_pred HHHHHhhcCCC--CHHHHHHH-HHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 346 ALEVINTSSPS--DPVLWRTL-LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 346 A~~~~~~~~~~--~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
|.+++-+ +.. +..+.-.+ ..-|.+.+.+--|-++|..+-.++|. |..| .|+-.....+|..+....
T Consensus 447 AW~~~lk-~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW---------eGKRGACaG~f~~l~~~~ 515 (557)
T KOG3785|consen 447 AWDMMLK-TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW---------EGKRGACAGLFRQLANHK 515 (557)
T ss_pred HHHHHHh-cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc---------CCccchHHHHHHHHHcCC
Confidence 9999988 666 44444334 47799999999999999999888887 4333 344455566676665544
Q ss_pred CccCC
Q 048830 423 IKTTP 427 (551)
Q Consensus 423 ~~~~~ 427 (551)
-.|.|
T Consensus 516 ~~~~p 520 (557)
T KOG3785|consen 516 TDPIP 520 (557)
T ss_pred CCCCc
Confidence 44444
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.53 E-value=1e-06 Score=74.51 Aligned_cols=106 Identities=7% Similarity=-0.046 Sum_probs=91.9
Q ss_pred HHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc
Q 048830 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388 (551)
Q Consensus 312 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 388 (551)
.+++..+ .+.|+. +..+...+...|++++|...|++++.. +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455554 345553 556788899999999999999986655 88999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 389 AASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 389 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
|+++.++..++.++...|+.++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=6.5e-06 Score=83.15 Aligned_cols=190 Identities=19% Similarity=0.162 Sum_probs=155.3
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048830 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300 (551)
Q Consensus 221 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 300 (551)
++|-...-..+...+.+.|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||+..|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555566678889999999999999999974 4788889999999999999999988887 48999999999988
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a 377 (551)
.....-+++|+++++....+ .-..+.....+.++++++.+.|+..+.. ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88888889999988866432 1112222334478899999988876665 677888888888889999999
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
...|...+.++|++...|+.+..+|.+.|+-.+|...+++..+-+..+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999998887766433
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=4.6e-05 Score=82.25 Aligned_cols=231 Identities=13% Similarity=0.116 Sum_probs=176.3
Q ss_pred HHHHHHHcCCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHHhC-C---CCChhHHHHHHHHHHhCCCHHHHHHHhcc
Q 048830 75 YYNHMLMASLSRPDT-FTFTFTLKACERVKALNKCQELHGFVIRSG-Y---ERCVVVSTNLMRGYAANGVIEAARSVFDN 149 (551)
Q Consensus 75 l~~~m~~~~~~~pd~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 149 (551)
=|++..... ||. ..|..-+......+++++|+++.+++++.= + ..-..+|.++++.-..-|.-+...++|++
T Consensus 1446 Dferlvrss---PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1446 DFERLVRSS---PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHhcC---CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 344444443 554 567777888888999999999999988641 1 12245788888888888888888999998
Q ss_pred CCC-CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-Cchh
Q 048830 150 MPE-RD-LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV-ESVY 226 (551)
Q Consensus 150 m~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~ 226 (551)
..+ -| ...|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.=.. -...
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 876 23 456889999999999999999999999874 3455667888888888888889999999988886322 1355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHH
Q 048830 227 VGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS--ITFLGLLCGC 301 (551)
Q Consensus 227 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~ 301 (551)
...-.+.+-.++|+.+.+..+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-. ..|.-.+..-
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 666677788899999999999998874 24678999999999999999999999999998887765 4455555544
Q ss_pred hccCCHHH
Q 048830 302 SHQGLVEE 309 (551)
Q Consensus 302 ~~~g~~~~ 309 (551)
.+.|+-+.
T Consensus 1682 k~~Gde~~ 1689 (1710)
T KOG1070|consen 1682 KSHGDEKN 1689 (1710)
T ss_pred HhcCchhh
Confidence 44455433
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=1e-05 Score=72.33 Aligned_cols=153 Identities=10% Similarity=0.122 Sum_probs=114.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHH
Q 048830 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311 (551)
Q Consensus 232 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 311 (551)
+-.|.+.|+++.+....+.+..+. ..|...++.++++..+++..... +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777788777655544332221 01223566778888887777653 456677888888899999999999
Q ss_pred HHHHHhHHhcCCCC-CccchhhhhHH-HhhcCC--HHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 048830 312 EYFHMMVSRYNLKP-GIKHYGCLVDL-YGRAGK--LEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNL 384 (551)
Q Consensus 312 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 384 (551)
..|++..+ +.| +...+..+..+ +...|+ .++|.+++++++.. +...+..+...+...|++++|...++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998864 455 67777788876 467777 58999999886655 8889999999999999999999999999
Q ss_pred HhhcCCCcchHH
Q 048830 385 VQLEAASAGDYV 396 (551)
Q Consensus 385 ~~~~p~~~~~~~ 396 (551)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987665443
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=1.4e-05 Score=80.78 Aligned_cols=214 Identities=12% Similarity=0.102 Sum_probs=143.7
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHH
Q 048830 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200 (551)
Q Consensus 121 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 200 (551)
+|-...-..+...+...|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 444445566777788888888888888775 4577777788888888888877777665 367777777777776
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHH
Q 048830 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAIS 277 (551)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 277 (551)
.+..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|-....+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 6666667777666654332 1112222223457777777777765432 34567777777777777777777
Q ss_pred HHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 278 FFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 278 ~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+- + .-+...|...+....+.|.+++|.+.+.+
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 7777665 35554 56777777777777777777777777653 3 33445566666666777777777777766
No 116
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.47 E-value=1.7e-05 Score=82.64 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=49.3
Q ss_pred HHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 345 KALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 345 ~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.|..-+.+++.. +..+|+.|.-. ..-|++.-|...|-+....+|.+..+|..++-.+.+..+++-|...|.+.+.
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 455555554444 66666666655 4456666666677677777777777777777777777777777777766654
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=0.00021 Score=73.27 Aligned_cols=204 Identities=13% Similarity=0.056 Sum_probs=139.2
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC-------------CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCC
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN-------------PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~-------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 84 (551)
.+..+|..+.+|+.+. .+++-|.-.+..|.+ ++ ..=....-...+-|..++|+.+|++-.+.+
T Consensus 755 kS~~vW~nmA~McVkT--~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D- 830 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKT--RRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD- 830 (1416)
T ss_pred hhhHHHHHHHHHhhhh--ccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence 4677899999999999 999999888888753 21 111122223456688899999998877643
Q ss_pred CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC------------
Q 048830 85 SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE------------ 152 (551)
Q Consensus 85 ~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------ 152 (551)
.|=+.|...|.+++|.++-+.=-+..+ ..+|..-..-+-..++.+.|++.|++...
T Consensus 831 ---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 831 ---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred ---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 244556678999999887554322222 22344444445556778888887765432
Q ss_pred -----------CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 048830 153 -----------RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221 (551)
Q Consensus 153 -----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 221 (551)
+|...|.-....+-..|+.+.|+.+|...+. |-++.+..|-.|+.++|.++-++ .
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---s-- 964 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---S-- 964 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---c--
Confidence 3555555566666677999999999887653 44566666778888888877654 2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 222 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
-|.....-|..+|-..|++.+|...|-+..
T Consensus 965 -gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 965 -GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 355666678888888888888888887654
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=8.9e-06 Score=80.16 Aligned_cols=244 Identities=13% Similarity=0.025 Sum_probs=179.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 242 (551)
.-+.+.|+..+|.-.|+...+.. +-+...|..|...-+..++-..|+..+.+.++.. +.+..+.-+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34678899999999998887653 3345577778888888888888999888888864 335778888888899999999
Q ss_pred HHHHHHHhcCCCC-HhHHHHHH---------HHHHhcCChHHHHHHHHHHHH-cCCCCCHhhHHHHHHHHhccCCHHHHH
Q 048830 243 SAFCVFSRMRKRD-VLSWNSMI---------VGYGVHGRGDEAISFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGV 311 (551)
Q Consensus 243 ~A~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~ 311 (551)
.|.+.|+...... ...|...- ..+..........++|-++.. .+..+|......|.-.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999988763210 00000000 112222234455666666655 454467777777777788899999999
Q ss_pred HHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh
Q 048830 312 EYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387 (551)
Q Consensus 312 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 387 (551)
..|+.++ ..+| |...|+-|.-.++...+.++|+.-|++++.. -+.++..|.-.|...|.+++|...|-.++.+
T Consensus 451 Dcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999997 4677 6889999999999999999999999997776 6778889999999999999999999999987
Q ss_pred cCCC----------cchHHHHHHHhhhcCChhHH
Q 048830 388 EAAS----------AGDYVLLATIYACTKDEEGV 411 (551)
Q Consensus 388 ~p~~----------~~~~~~l~~~~~~~g~~~~a 411 (551)
.+.+ ..+|..|=.++.-.++.|-+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 6441 13555555556656655533
No 119
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.0018 Score=68.22 Aligned_cols=300 Identities=12% Similarity=0.042 Sum_probs=193.8
Q ss_pred hhhhhhHhhhhccCC--CCccHHHHHHHHHHcCCCCChHHHHHHHhcCC-CCChhh-----HHHHH--------------
Q 048830 3 LKKHARYVGLNKARQ--AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ-NPQTQA-----WNSLI-------------- 60 (551)
Q Consensus 3 ~~~~~~~~~~~~g~~--~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~-~~~~~~-----~~~li-------------- 60 (551)
|++-++++ +.++. .|+.-.+..+.++... +-..+-.++++++. ++++++ -|.||
T Consensus 967 RqLiDqVv--~tal~E~~dPe~vS~tVkAfMta--dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~Y 1042 (1666)
T KOG0985|consen 967 RQLIDQVV--QTALPETQDPEEVSVTVKAFMTA--DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEY 1042 (1666)
T ss_pred HHHHHHHH--HhcCCccCChHHHHHHHHHHHhc--CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHH
Confidence 45556665 56663 4666677788999998 88899999998764 333322 12222
Q ss_pred -------------HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHH
Q 048830 61 -------------RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127 (551)
Q Consensus 61 -------------~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 127 (551)
.....++-+++|..+|++.- .+......++.- -++++.|.++-+.. ..+.+|
T Consensus 1043 I~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vW 1107 (1666)
T KOG0985|consen 1043 INRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVW 1107 (1666)
T ss_pred HHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHH
Confidence 22334444566666665432 344444444432 35556665544332 345678
Q ss_pred HHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChH
Q 048830 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207 (551)
Q Consensus 128 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 207 (551)
+.+..+-.+.|.+.+|++-|-+. .|+..|...+....+.|.|++-++++...++..-.|... +.++-+|++.+++.
T Consensus 1108 sqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1108 SQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLT 1183 (1666)
T ss_pred HHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHH
Confidence 88999999999999998887554 456678888999999999999998887777666556544 35777888888877
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC------------------------CCCHhHHHHHH
Q 048830 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR------------------------KRDVLSWNSMI 263 (551)
Q Consensus 208 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~li 263 (551)
+-+.+.. .|+..-...+.+-+...|.++.|.-+|..+. ..+..+|-..-
T Consensus 1184 elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1184 ELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred HHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 6665542 3444444444555555555555554444432 13567888887
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhc
Q 048830 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRA 340 (551)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 340 (551)
.+|...+.+.-| +|-...+.....-.-.|+..|...|-+++-+.+++..+ |+.. ....|+-|.-+|.+-
T Consensus 1257 faCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1257 FACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhc
Confidence 777776655433 34333444556667789999999999999999988664 6554 456677777777654
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.43 E-value=1.2e-05 Score=66.88 Aligned_cols=117 Identities=9% Similarity=0.053 Sum_probs=97.1
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
....-.+...+...|++++|..+|+-.... +...|-.|...|...|++++|+..|.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444555666778899999999999873322 88999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 048830 404 CTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAK 466 (551)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 466 (551)
..|+.+.|.+.|+...... ..+|+..++.++.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999886521 135777777777777666554
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.42 E-value=1.3e-05 Score=74.38 Aligned_cols=181 Identities=12% Similarity=-0.003 Sum_probs=125.5
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHh---HH
Q 048830 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV-E-SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DVL---SW 259 (551)
Q Consensus 188 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~---~~ 259 (551)
.....+......+...|+++.|...++.+.+.... | ....+..+..+|.+.|++++|...|+++.+ | +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34557777888899999999999999999886421 1 124677889999999999999999999864 2 222 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccch
Q 048830 260 NSMIVGYGVH--------GRGDEAISFFKQMLMAGFHPDSI-TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330 (551)
Q Consensus 260 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 330 (551)
..+..++... |+.++|.+.|+++... .|+.. ....+... .. .. ... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHH-H--------HHH
Confidence 5566666654 7899999999999875 45442 22111110 00 00 000 0 011
Q ss_pred hhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcC
Q 048830 331 GCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 389 (551)
..+...|.+.|++++|...+++++.. ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24667788889999998888775432 356788888999999999999988877766554
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.38 E-value=3.2e-05 Score=69.17 Aligned_cols=116 Identities=14% Similarity=0.042 Sum_probs=60.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCc
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~ 373 (551)
.+....+.|++..|...+.+... .-++|...|+.+.-+|.+.|++++|..-|.++++. ++...+.|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444555555555555555532 22334555555555555555555555555443333 55555555555555555
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHH
Q 048830 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 414 (551)
.+.|+.++.......+.+..+-..|..+....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555555555555555555555555555555544
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=7e-05 Score=80.12 Aligned_cols=169 Identities=7% Similarity=0.030 Sum_probs=101.2
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHh
Q 048830 88 DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ 167 (551)
Q Consensus 88 d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 167 (551)
+...+..|+..+...+++++|.++.+...+.. +.....|-.+...|.+.++.+.+.-+ .++.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 44566677777777777777777777555532 22233333344456666664444333 23333334
Q ss_pred cCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 048830 168 ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247 (551)
Q Consensus 168 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 247 (551)
..++.-+..+...|... .-+...+-.+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.++
T Consensus 96 ~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 96 NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 44443333344444432 2233456667777777777777777777777766 44677777777777777 77777777
Q ss_pred HHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048830 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285 (551)
Q Consensus 248 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (551)
+.+. +..|...+++.++.++|.++...
T Consensus 172 ~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 172 LKKA-----------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence 6653 23355666777777777777764
No 124
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00014 Score=71.37 Aligned_cols=343 Identities=14% Similarity=0.064 Sum_probs=201.9
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCC
Q 048830 61 RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGV 139 (551)
Q Consensus 61 ~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~ 139 (551)
.+....|+++.|+.+|-+.....+ +|...|+.=..+++..|++++|.+=-.+.++. .|+ +.-|+-+..+..-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 355678999999999999988876 78899999999999999999998776666654 454 4568888888888999
Q ss_pred HHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH----hhhCCc-----ccCHHHHHHHHHHHHhc----
Q 048830 140 IEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYER----MRFEDV-----GLDGFTLVCLLSSCAHV---- 203 (551)
Q Consensus 140 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~-----~p~~~t~~~ll~~~~~~---- 203 (551)
+++|+..|.+-.+ .|...++-+..++... . ++.+.|.. +...+. ......|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999987665 3445566666665111 0 01111110 000000 00112233333222110
Q ss_pred ---CChHHHHHHHHHHHH--------hC-------CCC------------c----------hhHHHHHHHHHHhcCCHHH
Q 048830 204 ---GALNMGIFLHRIACE--------MG-------FVE------------S----------VYVGNALVDMYAKCGNLDS 243 (551)
Q Consensus 204 ---~~~~~a~~~~~~~~~--------~g-------~~~------------~----------~~~~~~li~~y~~~g~~~~ 243 (551)
.+.+...+.+..+.. .+ ..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 001111111111100 00 011 0 0112345555566666677
Q ss_pred HHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C----HhhHHHHHHHHhccCCHHHHHHHHH
Q 048830 244 AFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP--D----SITFLGLLCGCSHQGLVEEGVEYFH 315 (551)
Q Consensus 244 A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~t~~~ll~~~~~~g~~~~a~~~~~ 315 (551)
|.+.+....+ .++.-++....+|...|.+.+....-.+..+.|..- | ...+..+..++.+.++++.|..+|+
T Consensus 243 a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 243 AIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 7666665543 333445555566777776666666555555544211 1 1122234445666677777777777
Q ss_pred HhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHH---HHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVL---WRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 316 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
+.+..+ -.|+ .+.+....+++....+. ... ++.. -..-...+.+.|++..|...|.+++..+|+|
T Consensus 323 kaLte~-Rt~~---------~ls~lk~~Ek~~k~~e~-~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D 391 (539)
T KOG0548|consen 323 KALTEH-RTPD---------LLSKLKEAEKALKEAER-KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED 391 (539)
T ss_pred HHhhhh-cCHH---------HHHHHHHHHHHHHHHHH-HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence 765542 2222 22333344444444433 221 2111 1222566788999999999999999999999
Q ss_pred cchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 392 AGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+..|...+-+|.+.|.+..|.+--+...+.
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999999999998865555443
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00041 Score=62.18 Aligned_cols=174 Identities=14% Similarity=0.071 Sum_probs=105.4
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048830 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291 (551)
Q Consensus 212 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (551)
+.+.+.......+......-...|...|++++|.+.......-+....+ ...+.+..+.+-|...+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 3344444333333333333445677888888888887774333333333 34455667778888888888763 255
Q ss_pred hhHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHH
Q 048830 292 ITFLGLLCGCSH----QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTL 364 (551)
Q Consensus 292 ~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 364 (551)
.|.+-|..++.+ .+.+..|.-+|++|.. ...|+..+.+...-+....|++++|..+++.++.. ++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 677766666543 4567788888888854 35667666777777777777777777777765655 55555555
Q ss_pred HHHHHh-cCcHHHHHHHHHHHHhhcCCCc
Q 048830 365 LGSCKI-HRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 365 l~~~~~-~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
+..-.. ..+.+.-.+...++....|..+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 543333 3344455566666666666543
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=0.0002 Score=69.62 Aligned_cols=118 Identities=14% Similarity=0.083 Sum_probs=93.4
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHH
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
.+...|.++.|+..++.+.+. .+-|+.......+.+.+.++.++|.+.+++++.. ....+-++..++.+.|+.++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 345578888888888888653 3335666677788888888998888888886655 56777788888888888888
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 377 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
|+..++.....+|++|..|..|+.+|...|+..++...+.++.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 8888888888888888888888888888888777777766554
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.29 E-value=5.6e-06 Score=69.36 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=78.2
Q ss_pred CCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 323 LKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 323 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
..| +......+...+...|++++|.+.++.+... +...|..+...+...|+++.|...++++++.+|.++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 344 3444556667777778888888777764332 777888888888888889999999998888889888899999
Q ss_pred HHHhhhcCChhHHHHHHHHHHhC
Q 048830 399 ATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.+|...|++++|...++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988877664
No 128
>PLN02789 farnesyltranstransferase
Probab=98.26 E-value=0.00091 Score=64.36 Aligned_cols=223 Identities=9% Similarity=0.038 Sum_probs=111.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCcccCHH-HHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 048830 161 IISCYTQASFHLEALKLYERMRFEDVGLDGF-TLVCLLSSCAHVG-ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238 (551)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 238 (551)
+-..+...++.++|+.+..++++. .|+.. .+..--.++...+ .++++...++.+.+... .+..+|+....++.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 333444455556666666555542 33332 2222223333344 34556666665555432 2333454444344444
Q ss_pred CCH--HHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc---CC----
Q 048830 239 GNL--DSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ---GL---- 306 (551)
Q Consensus 239 g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~---- 306 (551)
|+. +++..+++++.+ +|..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 442 445555555543 45566666666666666777777777777665422 334444433333332 11
Q ss_pred HHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhc----CCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcC------
Q 048830 307 VEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRA----GKLEKALEVINTSSPS---DPVLWRTLLGSCKIHR------ 372 (551)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g------ 372 (551)
.+....+...++. ..| +...|+-+..+|... ++..+|.+++.+.+.. +......|+..|....
T Consensus 199 ~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 199 RDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred HHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhh
Confidence 2344555544443 234 456666666666552 3345566666553332 4555555666655421
Q ss_pred ------------cHHHHHHHHHHHHhhcCC
Q 048830 373 ------------NVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 373 ------------~~~~a~~~~~~~~~~~p~ 390 (551)
..++|..+++.+-+.+|-
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235666666666544554
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=0.00012 Score=77.58 Aligned_cols=132 Identities=12% Similarity=0.101 Sum_probs=112.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hhHH
Q 048830 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS-ITFL 295 (551)
Q Consensus 220 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 295 (551)
....+...+-.|.......|.+++|..+++...+ | +...+..+...+.+.+++++|+..+++.... .|+. ....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 3556788899999999999999999999999874 4 5667888899999999999999999999985 5665 5556
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC
Q 048830 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356 (551)
Q Consensus 296 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 356 (551)
.+..++.+.|++++|..+|+++... .| +...+..+..++-..|+.++|...|++++..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6777889999999999999999762 34 4778899999999999999999999996655
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.22 E-value=0.001 Score=71.50 Aligned_cols=276 Identities=12% Similarity=0.031 Sum_probs=161.7
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhh-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH
Q 048830 50 NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT-FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVST 128 (551)
Q Consensus 50 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 128 (551)
+.+...|..|+..|...+++++|.++.+...+.. |+... |-.+...+.+.++...+..+ .+... .+...-|+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~ 100 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWA 100 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchh
Confidence 3466778888888888888888888888776665 44332 22222245555555555444 22221 11111122
Q ss_pred HHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHH
Q 048830 129 NLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208 (551)
Q Consensus 129 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 208 (551)
.+-..|.+-|++. .+..++-.+..+|-+.|+.++|..+|+++.+.. +-|....+.+...++.. ++++
T Consensus 101 ~ve~~~~~i~~~~-----------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 101 IVEHICDKILLYG-----------ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred HHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2222222222211 123366678888888888888888888888776 45666777788888877 8888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA-GF 287 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~ 287 (551)
|.+++..+++. |...+++..+.+++.++..-++.-. +.-..+.+.+... |.
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~-------------d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDF-------------DFFLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccc-------------hHHHHHHHHHHhhhcc
Confidence 88888777664 5666788888888887765443322 2222333333322 22
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhh----cCCHHHHHHHHhhcCCCCHHHHH
Q 048830 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGR----AGKLEKALEVINTSSPSDPVLWR 362 (551)
Q Consensus 288 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 362 (551)
.--..++..+-..|....+++++..+++.+++ ..| |.....-++..|.. ...+++.+++
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~------------- 283 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYKEKYKDHSLLEDYLKM------------- 283 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHHHHccCcchHHHHHHH-------------
Confidence 22334555566677778888888888888864 444 44445555555541 1222222222
Q ss_pred HHHHHHHhc-CcHHHHHHHHHHHHhhcCCCc
Q 048830 363 TLLGSCKIH-RNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 363 ~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 392 (551)
+..... .++..+..-|++.+..++.+-
T Consensus 284 ---s~l~~~~~~~~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 284 ---SDIGNNRKPVKDCIADFEKNIVFDTGNF 311 (906)
T ss_pred ---hccccCCccHHHHHHHHHHHeeecCCCE
Confidence 112222 456777777777777766653
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.21 E-value=0.008 Score=59.43 Aligned_cols=393 Identities=12% Similarity=0.075 Sum_probs=227.9
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN--P-QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~ 93 (551)
+.|+.+|+.||.-+.. ..+++++..++++.. | ....|..-|..-....+++....+|.+.+..- .+...|.
T Consensus 17 P~di~sw~~lire~qt---~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~ 90 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQT---QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWK 90 (656)
T ss_pred CccHHHHHHHHHHHcc---CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHH
Confidence 4588899999998765 589999999998863 3 56789999999999999999999999988654 4555555
Q ss_pred HHHHHHhc-cCChHHH----HHHHHHH-HHhCCCCCh-hHHHHHHHH---------HHhCCCHHHHHHHhccCCC-C---
Q 048830 94 FTLKACER-VKALNKC----QELHGFV-IRSGYERCV-VVSTNLMRG---------YAANGVIEAARSVFDNMPE-R--- 153 (551)
Q Consensus 94 ~ll~~~~~-~~~~~~a----~~~~~~~-~~~g~~~~~-~~~~~li~~---------y~~~g~~~~A~~~~~~m~~-~--- 153 (551)
.-|+---+ .++...+ .+.|+.. .+.|+.+-. ..|+..++. |....+++..+++++++.. |
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 55543222 2333332 2333333 345544432 345555443 3444567778888887754 1
Q ss_pred ------ChhHHHHHHHHH-------HhcCChHHHHHHHHHhhh--CCcccCHHH---------------HHHHH------
Q 048830 154 ------DLVSWNSIISCY-------TQASFHLEALKLYERMRF--EDVGLDGFT---------------LVCLL------ 197 (551)
Q Consensus 154 ------~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~~~~p~~~t---------------~~~ll------ 197 (551)
|-..|..=|+.. -+...+..|.+++++... .|+.-...+ +..+|
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 222221111111 112233444444444321 111100000 10011
Q ss_pred -------------------------------------------HHHHhcCC-------hHHHHHHHHHHHHhCCCCchhH
Q 048830 198 -------------------------------------------SSCAHVGA-------LNMGIFLHRIACEMGFVESVYV 227 (551)
Q Consensus 198 -------------------------------------------~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~ 227 (551)
..+...|+ -+++..+++..+..-...+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111122 1223333333332211222222
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhhHHHHHH
Q 048830 228 GNALVDMYAKC---GNLDSAFCVFSRMRK----RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP-DSITFLGLLC 299 (551)
Q Consensus 228 ~~~li~~y~~~---g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 299 (551)
|.++.+.--.. ...+.....+++... .-..+|-.+|..-.+..-...|..+|.+..+.+..+ +....++++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 22222111000 112333333333321 123456677777777888889999999999988777 5567777777
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCc
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~ 373 (551)
.+| +++.+.|.++|+.-.+++|-.| .--...++-+...++-..|..+|++.++. ...+|..++..-..-|+
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 666 5788999999998887765444 23356777788889989999999986655 45889999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC----cchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 374 VEIGEIAMKNLVQLEAAS----AGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
...+..+-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 488 L~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999999988888766522 123334556666666654444433333
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.20 E-value=6e-05 Score=67.44 Aligned_cols=156 Identities=12% Similarity=-0.061 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 048830 57 NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136 (551)
Q Consensus 57 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 136 (551)
..+-..+...|+-+.+..+......... -|.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 4444555566666666666555443322 244444456666666677777766666665543 5666666666666777
Q ss_pred CCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHH
Q 048830 137 NGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213 (551)
Q Consensus 137 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 213 (551)
.|+++.|..-|.+..+ .+....|.|.-.|.-.|+.+.|..++......+ .-|...-..+.-+....|++++|+.+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777766666665543 345556666666666677777776666665543 224444445555566666666666665
Q ss_pred HHH
Q 048830 214 RIA 216 (551)
Q Consensus 214 ~~~ 216 (551)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=3.6e-06 Score=51.55 Aligned_cols=35 Identities=40% Similarity=0.736 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (551)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=3e-05 Score=76.02 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=93.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc
Q 048830 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIH 371 (551)
Q Consensus 295 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~ 371 (551)
.+|+..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++.+++.. +...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34555566667777777777777543 244 3445666666677777777777765543 666677777889999
Q ss_pred CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
++++.|+.+.+++.+..|.+-.+|..|+.+|...|++++|...++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999998775
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.13 E-value=0.018 Score=60.53 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCcHH---HHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCccC
Q 048830 360 LWRTLLGSCKIHRNVE---IGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTT 426 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 426 (551)
+-+.|+..|++.++.. +|+-+++..+...|.|+..-..|+.+|+-.|-+..|.+.++.+.-+.|..+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 4567778888887754 677777888888899999999999999999999999999998876666654
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.00066 Score=66.18 Aligned_cols=143 Identities=20% Similarity=0.153 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL-LCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVD 335 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 335 (551)
.+--....+...|+.++|+..++.+... .||...|..+ ...+...++.++|.+.++.+.. ..|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 3333444566789999999999998875 6776666554 4578899999999999999974 5675 556667889
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHH
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 412 (551)
+|.+.|++.+|..+++..... |+..|..|..+|...|+..++... .+..|.-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 999999999999999874433 999999999999999998877654 455778899999999
Q ss_pred HHHHHHHhCC
Q 048830 413 RTRKLIKSNG 422 (551)
Q Consensus 413 ~~~~~m~~~g 422 (551)
......+++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9998887653
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=4.2e-06 Score=51.28 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCH
Q 048830 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190 (551)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 190 (551)
.+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999998873
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.09 E-value=6.3e-05 Score=62.94 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=84.6
Q ss_pred HHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC
Q 048830 278 FFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356 (551)
Q Consensus 278 ~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 356 (551)
++++.... .|+. .....+...+...|++++|...|+.+... .+.+...+..+...|.+.|++++|...+++++..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444442 4433 44556667777888888888888887653 2336677788888888888888888888875444
Q ss_pred ---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 357 ---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 357 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
+...+..+...+...|+.+.|...++++++++|+++.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 7788888888999999999999999999999998765
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00011 Score=71.95 Aligned_cols=120 Identities=12% Similarity=0.100 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 048830 57 NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136 (551)
Q Consensus 57 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 136 (551)
.+|+..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++.+.++. .+.+......-...+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 455666777788888888888887764 44 3344667777777778888888887765 34566666667777888
Q ss_pred CCCHHHHHHHhccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 048830 137 NGVIEAARSVFDNMPE--RD-LVSWNSIISCYTQASFHLEALKLYERMR 182 (551)
Q Consensus 137 ~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (551)
.++.+.|.++.+++.+ |+ -.+|..|..+|.+.|+++.|+..+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888765 43 4578888888888888888888887764
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=9.7e-06 Score=49.27 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhCCccc
Q 048830 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188 (551)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 188 (551)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.3e-05 Score=48.68 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (551)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.00014 Score=61.55 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--ccchhh
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD---SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG--IKHYGC 332 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 332 (551)
.|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|+ ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344444444 2555555555555555532 111 122222334455555555555555555443 21111 112223
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKN 383 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~ 383 (551)
|...+...|++++|+..++. .+. .+..+..+...+...|+.++|...|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444445555555555444 222 333333333444444444444444433
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=5.9e-05 Score=58.03 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=73.7
Q ss_pred hhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC
Q 048830 330 YGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406 (551)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 406 (551)
+..+...+...|++++|..++++++.. +...+..+...+...++++.|...++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888774443 55677778888888899999999999999988888888889999999999
Q ss_pred ChhHHHHHHHHHHh
Q 048830 407 DEEGVARTRKLIKS 420 (551)
Q Consensus 407 ~~~~a~~~~~~m~~ 420 (551)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887754
No 144
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.93 E-value=0.028 Score=55.80 Aligned_cols=369 Identities=9% Similarity=0.073 Sum_probs=216.4
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 048830 51 PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130 (551)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 130 (551)
-|+.+|+.||+-+..+ ..+++.+.++++...-+ -....|..-+..-...++++..+.+|.+.+..-+ +...|..-
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP--~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP--SSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 4899999999977666 89999999999986543 3456778888888899999999999999887644 45555544
Q ss_pred HHHHH-hCCCHHHH----HHHhcc------CCCCChhHHHHHHHH---------HHhcCChHHHHHHHHHhhhCCccc--
Q 048830 131 MRGYA-ANGVIEAA----RSVFDN------MPERDLVSWNSIISC---------YTQASFHLEALKLYERMRFEDVGL-- 188 (551)
Q Consensus 131 i~~y~-~~g~~~~A----~~~~~~------m~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~~~~p-- 188 (551)
++--- ..|+...+ .+.|+- |.-..-..|+.-+.- |..+.+.+...++|+++....+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 43221 22333322 122221 112334456665543 345556677788888886532211
Q ss_pred ----CHHHHHHHHHHHH-------hcCChHHHHHHHHHHHH--hCCCCchh---------------HHHHHHHHHHhcCC
Q 048830 189 ----DGFTLVCLLSSCA-------HVGALNMGIFLHRIACE--MGFVESVY---------------VGNALVDMYAKCGN 240 (551)
Q Consensus 189 ----~~~t~~~ll~~~~-------~~~~~~~a~~~~~~~~~--~g~~~~~~---------------~~~~li~~y~~~g~ 240 (551)
|-.+|-.-++... ....+..|.++++++.. .|+.-+.. .|-.+|.-=-..+-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 2222322222221 22334556666666544 23221111 12222221110000
Q ss_pred ------HH--HHHHHHHhcCC---CCHhHHHH-------HHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHhhHH
Q 048830 241 ------LD--SAFCVFSRMRK---RDVLSWNS-------MIVGYGVHGR-------GDEAISFFKQMLMAGFHPDSITFL 295 (551)
Q Consensus 241 ------~~--~A~~~~~~~~~---~~~~~~~~-------li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~ 295 (551)
.- ...=+++.... -.+..|-- .-..+...|+ -+++..+++.....-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000000000 00111110 0112233333 455666666655532233444444
Q ss_pred HHHHHHh---ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHH
Q 048830 296 GLLCGCS---HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLWRTLLGS 367 (551)
Q Consensus 296 ~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~ 367 (551)
.+...-- .....+....+++++.....++|+. +|-.+++.-.|..-+..|+.+|.++-+. ++.+.++++..
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 4333211 1113566677778777766666765 6778888888999999999999883332 77788888887
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCccC
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTT 426 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 426 (551)
++ .+|.+.|.++|+--++.-+++|..-...+.-+...|+-..++.+|++....++.++
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 76 56889999999999999999888777888889999999999999999987755543
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.92 E-value=3.3e-05 Score=55.96 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC-ChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK-DEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 420 (551)
++.+|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999 79999999988764
No 146
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.91 E-value=0.0011 Score=66.54 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHcCCChhHHHHH---------HHHHHHcCCCCCChhhHHHHHHHHhccCChHHHH--HHHHHHHHhCCCC
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFY---------YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ--ELHGFVIRSGYER 122 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l---------~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~g~~~ 122 (551)
+.+.+-+-.|...|.+++|..+ ++.+-... .+...++..=++|.+..+..--+ .-++++.+.|-.|
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A---LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA---LEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHHH---HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 3344445556666777666543 11111111 23334444555666655544322 2345566777667
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 048830 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182 (551)
Q Consensus 123 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (551)
+... +...++-.|.+.+|-++|.+ +|.-..|+++|.+|+
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLR 672 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHH
Confidence 7654 45667778889998888755 455555666665553
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0014 Score=58.38 Aligned_cols=163 Identities=17% Similarity=0.182 Sum_probs=101.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS---MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 304 (551)
|.-+.-+...+|+.+.|..+++.+..+-+.++.. -..-+-..|++++|+++++.+.+.. +.|.+++-.=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 3344444555666666666666654321111111 1122445677888888888877764 44556665555555556
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhc---CcHHHHH
Q 048830 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS---PSDPVLWRTLLGSCKIH---RNVEIGE 378 (551)
Q Consensus 305 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~---g~~~~a~ 378 (551)
|+.-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.--+++.+ |.++..+..+...+.-. .+.+.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 666677777776665 345577778888888888888888877777633 22666666666554332 3677788
Q ss_pred HHHHHHHhhcCCCcc
Q 048830 379 IAMKNLVQLEAASAG 393 (551)
Q Consensus 379 ~~~~~~~~~~p~~~~ 393 (551)
..|.+++++.|.+..
T Consensus 212 kyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 212 KYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHhChHhHH
Confidence 888888888875443
No 148
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0053 Score=55.29 Aligned_cols=84 Identities=13% Similarity=0.127 Sum_probs=39.9
Q ss_pred HHhcCCHHHHHHHHHhcCCC-CHhHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHH
Q 048830 235 YAKCGNLDSAFCVFSRMRKR-DVLSWNSMIVGYG----VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309 (551)
Q Consensus 235 y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 309 (551)
+.+..+.+-|.+.+++|.+- +-.+.+.|..++. -.+...+|.-+|++|-++ ..|+..+.+....++...|++++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 33444445555555555442 2223332332222 223455555555555543 35555555555555555555555
Q ss_pred HHHHHHHhHH
Q 048830 310 GVEYFHMMVS 319 (551)
Q Consensus 310 a~~~~~~~~~ 319 (551)
|..+++..+.
T Consensus 226 Ae~lL~eaL~ 235 (299)
T KOG3081|consen 226 AESLLEEALD 235 (299)
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.00096 Score=56.48 Aligned_cols=123 Identities=13% Similarity=0.112 Sum_probs=77.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChh---hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC--hhHHHH
Q 048830 55 AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF---TFTFTLKACERVKALNKCQELHGFVIRSGYERC--VVVSTN 129 (551)
Q Consensus 55 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ 129 (551)
.|..++..+ ..++...+...++.+...... +.. ....+...+...|++++|...|+.+......|+ ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~--s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS--SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 345555555 367777777777777776532 212 233344566777888888888888877652222 123444
Q ss_pred HHHHHHhCCCHHHHHHHhccCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 130 LMRGYAANGVIEAARSVFDNMPER--DLVSWNSIISCYTQASFHLEALKLYER 180 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (551)
|..++...|++++|+..++....+ ....+......|.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667777778888888887765442 234455666777777888777777764
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.84 E-value=9.7e-05 Score=72.67 Aligned_cols=103 Identities=11% Similarity=0.064 Sum_probs=77.6
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCc
Q 048830 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 298 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~ 373 (551)
...+...|+++.|...|+++++ ..| +...|..+..+|.+.|++++|+..+++++.. +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 4556667888888888888874 344 5667777788888888888888888875554 67778888888888888
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
+++|+..|+++++++|+++.....+..+..
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888888888888888777666554433
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.00023 Score=57.81 Aligned_cols=90 Identities=14% Similarity=0.027 Sum_probs=46.5
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHHHHHh
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLLATIY 402 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 402 (551)
.++..+.+.|++++|.+.|++++.. ....+..+..++...|+++.|...++.++...|++ +..+..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3444444445555555444442221 12334445555555566666666666666555543 33455566666
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 048830 403 ACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~ 421 (551)
.+.|++++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 6666666666666655543
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0015 Score=58.18 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=136.7
Q ss_pred cCCHHHHHHHHHhcCC--------CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHhccCCH
Q 048830 238 CGNLDSAFCVFSRMRK--------RDV-LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL-LCGCSHQGLV 307 (551)
Q Consensus 238 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~ 307 (551)
..+.++..+++.++.. ++. ..|..++-+....|+.+-|...++++...- |...-...| ..-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 3578888888888753 232 234455667778899999999999988863 554322222 2224457899
Q ss_pred HHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhc---CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 048830 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS---SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384 (551)
Q Consensus 308 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 384 (551)
++|.++++.++++ -+.|..++.-=+-+.-..|+--+|++-+..- .+.|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999864 2336777776666677778777777655442 4449999999999999999999999999999
Q ss_pred HhhcCCCcchHHHHHHHhhhcCC---hhHHHHHHHHHHhCCC
Q 048830 385 VQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGI 423 (551)
Q Consensus 385 ~~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~g~ 423 (551)
+-..|.+|..+..++..+.-.|. .+-|++++.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999888775 5667778877766443
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.76 E-value=0.00084 Score=63.71 Aligned_cols=133 Identities=10% Similarity=0.068 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG-CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998543 2233444433333 33357788899999999886 4446677889999
Q ss_pred HHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 336 LYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
.+.+.|+.+.|..+|++++.. ...+|...+..-.+.|+.+....+.+++.+.-|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999998876 345999999999999999999999999999888744
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.00036 Score=56.66 Aligned_cols=102 Identities=13% Similarity=0.094 Sum_probs=56.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHH
Q 048830 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGS 367 (551)
Q Consensus 295 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~ 367 (551)
..+...+...|++++|...|+.+.+.+.-.| ....+..+..++.+.|++++|.+.+++++.. ...++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444455555555555555543311111 1223344555555555555555555543221 23456666677
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
+...|+.+.|...++++++..|+++....
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 77778888888888888888887765443
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=3.8e-05 Score=45.39 Aligned_cols=31 Identities=35% Similarity=0.641 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 287 (551)
++||+++.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777788888888888888887777653
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.74 E-value=8e-05 Score=53.15 Aligned_cols=58 Identities=9% Similarity=0.010 Sum_probs=50.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 364 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+...+...|++++|+..++++++..|.++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999999999999999999999999999888653
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0003 Score=64.74 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=89.7
Q ss_pred CC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 324 KP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIH---RNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 324 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
.| |.+.|..|...|.+.|+++.|..-|.++... ++..+..+..++... ....++..+++++++++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 7899999999999999999999999887665 888888888776443 3577899999999999999999999
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 397 LLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 397 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
.|+-.+...|++.+|...|+.|.+.....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998865443
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=4.3e-05 Score=45.19 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFYYNHMLMAS 83 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 83 (551)
++||++|++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 467777777777777777777777777665
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00011 Score=67.14 Aligned_cols=108 Identities=14% Similarity=0.085 Sum_probs=85.8
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNV 374 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~ 374 (551)
.-..+.+++.+|...|..++ .+.| |..-|..=..+|.+.|.++.|.+-.+.++.. ....|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 34677889999999999987 4677 6677777888999999999999988887777 455677788999999999
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChh
Q 048830 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409 (551)
Q Consensus 375 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 409 (551)
++|++.|+++++++|++......|-.+-.+.+...
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998866555555444444433
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.69 E-value=0.00073 Score=59.15 Aligned_cols=130 Identities=14% Similarity=0.207 Sum_probs=88.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Cccchh
Q 048830 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD--SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYG 331 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 331 (551)
....+..+...+...|++++|...|++.......|. ...+..+...+.+.|++++|...+++..+ ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 445677777788888888888888888876543332 35677777888888888888888888764 334 455566
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
.+..+|...|+...+..-++.+ ...+++|...++++++.+|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6677777777666555444331 123567888888888888875 5555555555554
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00025 Score=64.88 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=72.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCC
Q 048830 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGK 342 (551)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 342 (551)
.-+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+..+ .+.| ....|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 34667788888888888888752 3345666677778888888888888777665 4566 36788888888888888
Q ss_pred HHHHHHHHhhcCCC---CHHHHHHHHHH
Q 048830 343 LEKALEVINTSSPS---DPVLWRTLLGS 367 (551)
Q Consensus 343 ~~~A~~~~~~~~~~---~~~~~~~ll~~ 367 (551)
+++|.+.|++++.. +...+..|-.+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 88888888887766 55444444333
No 162
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.001 Score=63.28 Aligned_cols=155 Identities=10% Similarity=-0.025 Sum_probs=102.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccc-------------h
Q 048830 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH-------------Y 330 (551)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~ 330 (551)
.++...|++++|...--...+.. ..+......-..++--.++.+.|...|++.+ .+.|+... +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence 35666777777776655555432 1111111111123334567777777777665 34454221 1
Q ss_pred hhhhHHHhhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 331 GCLVDLYGRAGKLEKALEVINTSSPS-------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
..=.+-..+.|++.+|.+.|.+++.. +...|........+.|+.++|+.-.+.+++++|.-..+|..-++++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 11223445788888898888887765 45556667777788899999999999999988888888888888888
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 048830 404 CTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~g 422 (551)
..++|++|.+-++...+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 8899999988887765543
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.63 E-value=0.0003 Score=61.35 Aligned_cols=92 Identities=9% Similarity=-0.156 Sum_probs=73.2
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 400 (551)
...|..++..+...|++++|...|++++.. ...+|..+...+...|++++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566677777788888888888876433 23578888899999999999999999999999998888888888
Q ss_pred Hhh-------hcCChhHHHHHHHHH
Q 048830 401 IYA-------CTKDEEGVARTRKLI 418 (551)
Q Consensus 401 ~~~-------~~g~~~~a~~~~~~m 418 (551)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888777666554
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.63 E-value=0.00054 Score=67.43 Aligned_cols=91 Identities=12% Similarity=0.019 Sum_probs=75.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhc
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRA 340 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 340 (551)
....+...|++++|+..|+++++.. +-+...|..+..+|...|++++|...++.++. +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999863 33557788888899999999999999999975 455 577888899999999
Q ss_pred CCHHHHHHHHhhcCCC
Q 048830 341 GKLEKALEVINTSSPS 356 (551)
Q Consensus 341 g~~~~A~~~~~~~~~~ 356 (551)
|++++|...|++++..
T Consensus 84 g~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999986655
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.62 E-value=6.8e-05 Score=56.75 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHH
Q 048830 340 AGKLEKALEVINTSSPS-----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414 (551)
Q Consensus 340 ~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 414 (551)
.|+++.|+.++++.+.. +...|..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35555666555552222 233445566777777777777777777 666666666666778888888888888887
Q ss_pred HHH
Q 048830 415 RKL 417 (551)
Q Consensus 415 ~~~ 417 (551)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.62 E-value=0.00014 Score=51.84 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=49.3
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
+...+.+.|++++|.+.|++++.. +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888875554 788888999999999999999999999999999875
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=97.62 E-value=0.00072 Score=56.74 Aligned_cols=86 Identities=9% Similarity=0.062 Sum_probs=75.9
Q ss_pred hHHHhhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChh
Q 048830 334 VDLYGRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409 (551)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 409 (551)
..-+...|++++|..+|.- +-. +...|..|...|...++++.|...|..+..++++||.++...+.+|...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~-L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRF-LCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHH-HHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3344578889999888876 322 88899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 048830 410 GVARTRKLIKS 420 (551)
Q Consensus 410 ~a~~~~~~m~~ 420 (551)
.|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0028 Score=55.22 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=70.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Cccchhh
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD--SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGC 332 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 332 (551)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++..... .| ....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 34566667777777888888888887776432221 246777777788888888888888777642 33 2344445
Q ss_pred hhHHHh-------hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 333 LVDLYG-------RAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 333 li~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
+...|. ..|++++|...+++ |...+++.++.+|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~------------------------a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQ------------------------AAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHH------------------------HHHHHHHHHHhCccc
Confidence 555555 45555555544444 677788888888764
No 169
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.57 E-value=0.0005 Score=65.23 Aligned_cols=128 Identities=9% Similarity=0.036 Sum_probs=95.3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHh---HHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---------CH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMM---VSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---------DP 358 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~ 358 (551)
..|..|.+.|.-.|+++.|+...+.= .+.+|-.. ....+..|.+++.-.|+++.|.+.|+..+.. ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666777777788899988776642 23344443 3466778899999999999999988762221 56
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhc------CCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLE------AASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
.+..+|..+|....+++.|+..+.+-+.+- .....++..|+++|...|..++|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 677788899988899999998888766532 2246688999999999999999988776543
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.0088 Score=56.97 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCH
Q 048830 227 VGNALVDMYAKC-GNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH-----PDS 291 (551)
Q Consensus 227 ~~~~li~~y~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~ 291 (551)
++..+...|-+. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-.. ++.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455566666 777777777766542 11 234455667778888888888888877664322 122
Q ss_pred h-hHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCCC--ccchhhhhHHHhh--cCCHHHHHHHHhhcCCC-CHHHHHHH
Q 048830 292 I-TFLGLLCGCSHQGLVEEGVEYFHMMVSRY-NLKPG--IKHYGCLVDLYGR--AGKLEKALEVINTSSPS-DPVLWRTL 364 (551)
Q Consensus 292 ~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~l 364 (551)
. .|...+-++...|++..|.+.++...... ++..+ ......|++++-. ...+++|..-|++ +.. |..--..|
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~-~~~ld~w~~~~l 274 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS-ISRLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT-SS---HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc-cCccHHHHHHHH
Confidence 1 22333335555678888888887765321 11111 2334455555533 4456777777777 544 54443333
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.00058 Score=59.77 Aligned_cols=80 Identities=11% Similarity=-0.026 Sum_probs=58.0
Q ss_pred cchhhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 048830 328 KHYGCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401 (551)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 401 (551)
..+..+...|...|++++|...|++++.. ....|..+...+...|+++.|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555555666666666666666654422 135677777888888888888888888888888888888888888
Q ss_pred hhhcCC
Q 048830 402 YACTKD 407 (551)
Q Consensus 402 ~~~~g~ 407 (551)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 887776
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.54 E-value=0.003 Score=65.00 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
++..|.++.......|++++|...++++++++| +...|..++.++...|+.++|...+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 556666666555666777777777777777777 36677777777777777777777777765543
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.54 E-value=0.00058 Score=52.28 Aligned_cols=91 Identities=23% Similarity=0.235 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHh
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 338 (551)
|..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+. .+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4455556666666666666666665542 222244555555556666666666666655432 1112234444444555
Q ss_pred hcCCHHHHHHHHhh
Q 048830 339 RAGKLEKALEVINT 352 (551)
Q Consensus 339 ~~g~~~~A~~~~~~ 352 (551)
..|++++|...+.+
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 55555555544443
No 174
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.52 E-value=0.11 Score=50.68 Aligned_cols=132 Identities=10% Similarity=0.055 Sum_probs=102.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccch-hhh
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY-GCL 333 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 333 (551)
...|-..+..-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-... -||...| ...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3456777777777888889999999999888 6677888888887666 47888899999876654 2444333 345
Q ss_pred hHHHhhcCCHHHHHHHHhhcCCC---C--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 334 VDLYGRAGKLEKALEVINTSSPS---D--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
+.-+.+.++-+.|..+|+.+++. + ..+|..++..-..-|+...+..+-+++.++-|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 56677888999999999976666 3 6788899988888999998888888888888774
No 175
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.48 E-value=0.12 Score=50.41 Aligned_cols=373 Identities=10% Similarity=0.033 Sum_probs=189.0
Q ss_pred HcCCCCChHHHHHHHhcCCCC---C------hhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH--H
Q 048830 31 AISVSSSLSYAQLLFNQIQNP---Q------TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA--C 99 (551)
Q Consensus 31 ~~~~~g~~~~A~~lf~~~~~~---~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~--~ 99 (551)
.+. +++.+|.++|.++-.. + .+.-+.+|++|..+ +.+.....+....+.. | ...|..+..+ +
T Consensus 17 qkq--~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 17 QKQ--KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF---G-KSAYLPLFKALVA 89 (549)
T ss_pred HHH--hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc---C-CchHHHHHHHHHH
Confidence 455 8899999999876521 2 22345677777655 3444444444444432 3 3455555555 3
Q ss_pred hccCChHHHHHHHHHHHHh--CCC------------CChhHHHHHHHHHHhCCCHHHHHHHhccCCC--------CChhH
Q 048830 100 ERVKALNKCQELHGFVIRS--GYE------------RCVVVSTNLMRGYAANGVIEAARSVFDNMPE--------RDLVS 157 (551)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~~~~~ 157 (551)
-+.+.+.+|.+.+..-... +.. +|...-+..+..+...|++.+++.++++|.+ -++.+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4678888888887766543 221 2223335667778889999999988888753 47777
Q ss_pred HHHHHHHHHhc--------CC-------hHHHHHHHHHhhhC------CcccCHHHHHHHHHHHHhcC--ChHHHHHHHH
Q 048830 158 WNSIISCYTQA--------SF-------HLEALKLYERMRFE------DVGLDGFTLVCLLSSCAHVG--ALNMGIFLHR 214 (551)
Q Consensus 158 ~~~li~~~~~~--------g~-------~~~A~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~ 214 (551)
||.++-.+.++ .. ++.++-+..+|... .+-|....+..++....-.. +..--.+++.
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 87754443322 11 22222223333221 22344444444443332111 1111112222
Q ss_pred HHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH--
Q 048830 215 IACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRM--------RKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-- 283 (551)
Q Consensus 215 ~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 283 (551)
.-...-+.|+ .-+...|+.-+.+ +.+++..+-+.+ .+.=+.++..++....+.++..+|-+.+.-+.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 2222222232 1122233333322 222221111111 11222344444444444444444444443332
Q ss_pred ------------------------------------------HcCCCCCHh-hHHHHH---HHHhccCC-HHHHHHHHHH
Q 048830 284 ------------------------------------------MAGFHPDSI-TFLGLL---CGCSHQGL-VEEGVEYFHM 316 (551)
Q Consensus 284 ------------------------------------------~~g~~p~~~-t~~~ll---~~~~~~g~-~~~a~~~~~~ 316 (551)
...+ |.. -...|+ .-+.+.|. -++|.++++.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 2211 110 001111 12233343 6677777776
Q ss_pred hHHhcCCCC-Cccchhhhh----HHHhhc---CCHH---HHHHHHhh-cCCC----CHHHHHHHHHH--HHhcCcHHHHH
Q 048830 317 MVSRYNLKP-GIKHYGCLV----DLYGRA---GKLE---KALEVINT-SSPS----DPVLWRTLLGS--CKIHRNVEIGE 378 (551)
Q Consensus 317 ~~~~~~~~p-~~~~~~~li----~~~~~~---g~~~---~A~~~~~~-~~~~----~~~~~~~ll~~--~~~~g~~~~a~ 378 (551)
+.+ +.| |..+-+.+. ..|..+ ..+. +-..++++ +++. +...-|.|..| +..+|++.++.
T Consensus 406 il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 406 ILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 653 333 332222211 112111 1111 11122222 2232 56666777755 67899999999
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 379 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
..-.-+.+..| ++.+|..++-+.....++++|..++..+
T Consensus 483 ~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 483 LYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99999999999 7999999999999999999999999764
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.45 E-value=0.0002 Score=51.53 Aligned_cols=53 Identities=9% Similarity=0.050 Sum_probs=46.5
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
...|++++|...++++++.+|+++.....++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999877653
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.0074 Score=57.50 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---------CH-HHHHHHHHHHHh
Q 048830 305 GLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGRAGKLEKALEVINTSSPS---------DP-VLWRTLLGSCKI 370 (551)
Q Consensus 305 g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~-~~~~~ll~~~~~ 370 (551)
|++++|.+.|++..+-+..... ..++..+...+.+.|++++|.++|++.... +. ..+-..+-.+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 4555555555544432211111 233444555566666666666666542111 01 111122234445
Q ss_pred cCcHHHHHHHHHHHHhhcCC
Q 048830 371 HRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~~~p~ 390 (551)
.||...|...+++....+|.
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTT
T ss_pred cCCHHHHHHHHHHHHhhCCC
Confidence 66777777777777776664
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.43 E-value=0.00047 Score=50.43 Aligned_cols=58 Identities=7% Similarity=-0.082 Sum_probs=52.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 365 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
...+...++++.|..+++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567888999999999999999999999999999999999999999999999887644
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.40 E-value=0.0014 Score=55.58 Aligned_cols=123 Identities=11% Similarity=0.005 Sum_probs=56.8
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHH
Q 048830 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK-PGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLW 361 (551)
Q Consensus 288 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 361 (551)
.|+...-..|..+....|+..+|...|++... |+- -|....-.+.++....+++.+|...+++.|+. .+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 44444444455555555555555555555443 222 23444444444444555555555554443322 23333
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHH
Q 048830 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 362 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 413 (551)
-.+...+...|....|+..|+.++.--|. +..-...+..+.++|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 33444455555555555555555544443 3333344444555554444443
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.39 E-value=0.015 Score=49.54 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=69.7
Q ss_pred CCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC--CcchH
Q 048830 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA--SAGDY 395 (551)
Q Consensus 322 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 395 (551)
.+.|++..-..|..++.+.|+..+|...|++++.. |....-.+.++....++...|...++++.+-+|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 45566666666777777777777777777765544 6666666667777777777777777777776654 45666
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 396 VLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 396 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
..++..|...|++++|+..|+...+.-..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 667777777777777777776665544333
No 181
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.37 E-value=0.00021 Score=51.61 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=49.2
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhhcC
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHR-NVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 389 (551)
...|..+...+...|++++|+..|++++.. +...|..+..++...| ++++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345666777777778888888777775544 7778888888888888 78899999999888887
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.33 E-value=0.0014 Score=62.29 Aligned_cols=128 Identities=9% Similarity=0.056 Sum_probs=101.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh-cCCHHHHHHHHhhcCCC---CHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR-AGKLEKALEVINTSSPS---DPVLWRTLLGS 367 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~---~~~~~~~ll~~ 367 (551)
.+|..++...-+.+..+.|..+|.++.+. -..+..+|.....+-.. .++.+.|.++|+.++.. +...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888888999999999999743 22345556666666444 56777799999997766 99999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCc---chHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASA---GDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+...++.+.|..+|++++..-|.+. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766544 58889999999999999999999888763
No 183
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.32 E-value=0.0086 Score=50.15 Aligned_cols=103 Identities=7% Similarity=-0.084 Sum_probs=71.5
Q ss_pred HhcCC-CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 048830 45 FNQIQ-NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123 (551)
Q Consensus 45 f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 123 (551)
+..+. +.+....-.+...+.+.|++++|..+|+.+....+ -+..-|-.|..++-..|++++|...|....... +.|
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp--~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~dd 102 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA--WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDA 102 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 34444 44555555666667777888888888887777664 355556667777777788888888888777765 456
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHhccC
Q 048830 124 VVVSTNLMRGYAANGVIEAARSVFDNM 150 (551)
Q Consensus 124 ~~~~~~li~~y~~~g~~~~A~~~~~~m 150 (551)
+..+-.+..+|...|+.+.|++.|+..
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667777777777777777777777654
No 184
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.055 Score=52.03 Aligned_cols=151 Identities=13% Similarity=-0.022 Sum_probs=96.9
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH--HHHHhcCCHHHHHHHHHhcCCCCHh---------------HHHHH
Q 048830 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALV--DMYAKCGNLDSAFCVFSRMRKRDVL---------------SWNSM 262 (551)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~y~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l 262 (551)
+...++.++|.++-..+.+... ...+..++ .++.-.++.+.|...|++...-|+. .|..=
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 3556777777776666665431 12222222 2344456777788888776643322 22223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHh
Q 048830 263 IVGYGVHGRGDEAISFFKQMLMA---GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYG 338 (551)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 338 (551)
..-..++|++.+|.+.|.+.+.. .+.|+...|.....+..+.|+.++|+.--+... .+.|. +..|..-..++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHH
Confidence 34456789999999999888763 345566667777777888899999888877665 34443 344444455666
Q ss_pred hcCCHHHHHHHHhhcCCC
Q 048830 339 RAGKLEKALEVINTSSPS 356 (551)
Q Consensus 339 ~~g~~~~A~~~~~~~~~~ 356 (551)
..++|++|.+-|+++|+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 678889999988887776
No 185
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.27 E-value=0.00019 Score=43.22 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=30.5
Q ss_pred HHHHHhhcCCCcchHHHHHHHhhhcCChhHHH
Q 048830 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412 (551)
Q Consensus 381 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 412 (551)
|+++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.27 E-value=0.0057 Score=60.58 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=80.9
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC----CChhHHHH
Q 048830 87 PDTFTFTFTLKACERVKALNKCQELHGFVIRS--GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE----RDLVSWNS 160 (551)
Q Consensus 87 pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~ 160 (551)
.+...+..+++.+....+++.+..++-..... ....-+.+..+++..|.+.|..+.+..+++.=.. ||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 45666777777777777777777777666543 1222234455777777777777777777766544 77777777
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhc
Q 048830 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203 (551)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 203 (551)
|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777766666777777666666554
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.26 E-value=0.0064 Score=62.66 Aligned_cols=139 Identities=12% Similarity=0.038 Sum_probs=101.2
Q ss_pred CCCHhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhcc--------CCHHHHHHHHHHhH
Q 048830 253 KRDVLSWNSMIVGYGV--HG---RGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSHQ--------GLVEEGVEYFHMMV 318 (551)
Q Consensus 253 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~--------g~~~~a~~~~~~~~ 318 (551)
..|..+|...+.+... .+ ...+|..+|++..+. .|+. ..+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3588899999988544 32 377999999999985 6775 4555544444322 12334444444432
Q ss_pred HhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 319 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
.......+...|..+.-.+...|++++|...+++++.. +...|..+...+...|+.++|...+++++.++|.+|.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 21112335577888877777889999999999997776 7778888899999999999999999999999999885
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.24 E-value=0.00028 Score=50.82 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=35.1
Q ss_pred hcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 339 RAGKLEKALEVINTSS---PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 339 ~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
..|++++|.++|++++ |.+..++..+..+|...|++++|...++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4455666666555532 22566666666666666666666666666666666655444443
No 189
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.23 E-value=0.00075 Score=50.97 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=53.1
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHH
Q 048830 269 HGRGDEAISFFKQMLMAGF-HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKA 346 (551)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 346 (551)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++.. ...| +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5778888888888887532 124445555778888888888888888772 2333 234444557778888888888
Q ss_pred HHHHhh
Q 048830 347 LEVINT 352 (551)
Q Consensus 347 ~~~~~~ 352 (551)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887765
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.22 E-value=0.0067 Score=47.17 Aligned_cols=80 Identities=11% Similarity=-0.102 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCc-ccCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHhCCCCchhHH
Q 048830 158 WNSIISCYTQASFHLEALKLYERMRFEDV-GLDGFTLVCLLSSCAHVG--------ALNMGIFLHRIACEMGFVESVYVG 228 (551)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 228 (551)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-+...+|+.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999999887653 244566788899999999999999
Q ss_pred HHHHHHHHh
Q 048830 229 NALVDMYAK 237 (551)
Q Consensus 229 ~~li~~y~~ 237 (551)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887765
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.21 E-value=0.063 Score=49.68 Aligned_cols=172 Identities=10% Similarity=0.039 Sum_probs=102.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCH-hH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-
Q 048830 231 LVDMYAKCGNLDSAFCVFSRMRK--RDV-LS---WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH- 303 (551)
Q Consensus 231 li~~y~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~- 303 (551)
....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|...+++..+.-..-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445567777788777777754 221 11 223456677788888888888888774211111233333333221
Q ss_pred -c---------------CC---HHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHH
Q 048830 304 -Q---------------GL---VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRT 363 (551)
Q Consensus 304 -~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 363 (551)
. .+ ...|...|+.+++++ |+ ..-..+|...+.. +.. -..---.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~-l~~~la~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVF-LKDRLAKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHH-HHHHHHHHHHH
Confidence 1 11 234445555555442 22 2334445443333 221 0111113
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 364 LLGSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 364 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
....|.+.|.+..|..-++.+++.-|+. +.+...+..+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4566888999999999999999988775 4567788999999999999999887654
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.023 Score=51.16 Aligned_cols=181 Identities=12% Similarity=0.004 Sum_probs=118.5
Q ss_pred hhhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC--CChh--------hHHHHHHHHHcCCChhHH
Q 048830 3 LKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN--PQTQ--------AWNSLIRAFAQSLSPLQA 72 (551)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~--~~~~--------~~~~li~~~~~~g~~~~A 72 (551)
|-+|+.+.. .. |+ -+++|++.+.-. .-+++-...|+.-.. ..+. .-+.++..+.-.|.+.-.
T Consensus 125 R~lhAe~~~-~l---gn--pqesLdRl~~L~--~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS 196 (366)
T KOG2796|consen 125 RILHAELQQ-YL---GN--PQESLDRLHKLK--TVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLS 196 (366)
T ss_pred HHHHHHHHH-hc---CC--cHHHHHHHHHHH--HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhh
Confidence 345666642 22 22 367788777765 556666666654322 2232 335667777777888888
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh-----HHHHHHHHHHhCCCHHHHHHHh
Q 048830 73 IFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV-----VSTNLMRGYAANGVIEAARSVF 147 (551)
Q Consensus 73 ~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~y~~~g~~~~A~~~~ 147 (551)
+.++.+..+...+ .++...+.+.+.-.+.|+.+.|...|+...+..-..|.. +.-.....|.-..++..|.+.|
T Consensus 197 ~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 197 VDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred HHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence 8888888887765 677777788888888889888888888777643233333 3333344566677888888888
Q ss_pred ccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHH
Q 048830 148 DNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLV 194 (551)
Q Consensus 148 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 194 (551)
++++. .|++.-|.-.-+..-.|+..+|++....|.+. .|...+-.
T Consensus 276 ~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 276 TEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 88776 45555665555566678888888888888764 34444433
No 193
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.19 E-value=0.0049 Score=47.89 Aligned_cols=81 Identities=7% Similarity=-0.013 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCChhHH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK--------ALNKCQELHGFVIRSGYERCVVVS 127 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 127 (551)
-...|..+...+++...-.+|+.+.+.|+..|+..+|+.++.+.++.. .+-..+.+|+.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 345566677779999999999999999993399999999999887653 244567889999999999999999
Q ss_pred HHHHHHHHh
Q 048830 128 TNLMRGYAA 136 (551)
Q Consensus 128 ~~li~~y~~ 136 (551)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.15 E-value=0.011 Score=47.75 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=65.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHh
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDS--ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYG 338 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 338 (551)
...++-..|+.++|+.+|++....|...+. ..+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 456677889999999999999988866553 4666778888899999999999998876532211 1222223445677
Q ss_pred hcCCHHHHHHHHhh
Q 048830 339 RAGKLEKALEVINT 352 (551)
Q Consensus 339 ~~g~~~~A~~~~~~ 352 (551)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888887765
No 195
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.13 E-value=0.0043 Score=54.44 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=73.5
Q ss_pred HHHHHhc--CCCCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc-------------
Q 048830 245 FCVFSRM--RKRDVLSWNSMIVGYGV-----HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ------------- 304 (551)
Q Consensus 245 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 304 (551)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455554 45677777777777764 466777777888888888888888898888887542
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCC
Q 048830 305 ---GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342 (551)
Q Consensus 305 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 342 (551)
.+.+-|++++++|. .+|+.||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 13567899999994 46999999999999999877764
No 196
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.11 Score=53.31 Aligned_cols=151 Identities=10% Similarity=0.068 Sum_probs=90.6
Q ss_pred CChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC----hhhHHHHHHHHhccCChHHHHHH
Q 048830 36 SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD----TFTFTFTLKACERVKALNKCQEL 111 (551)
Q Consensus 36 g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd----~~~~~~ll~~~~~~~~~~~a~~~ 111 (551)
|++++|++++-.|..+|.. |..+.+-|++-...++++. |....| ...++.+...++....++.|.+.
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777787777777776654 4555666666666655532 211011 13566677777777777777776
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH
Q 048830 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191 (551)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 191 (551)
+..-.. . ...+.+|.+..++++-+.+-+.+++. ....-.|...+...|.-++|.+.|-+-- .|
T Consensus 819 Y~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p--- 881 (1189)
T KOG2041|consen 819 YSYCGD------T---ENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRS----LP--- 881 (1189)
T ss_pred HHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhcc----Cc---
Confidence 654321 1 23566666666777766666666653 3344567777777888888777764331 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 048830 192 TLVCLLSSCAHVGALNMGIFLHR 214 (551)
Q Consensus 192 t~~~ll~~~~~~~~~~~a~~~~~ 214 (551)
...+..|...+++.+|.++-+
T Consensus 882 --kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH
Confidence 134456777777777766544
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.11 E-value=0.0049 Score=49.67 Aligned_cols=86 Identities=10% Similarity=-0.041 Sum_probs=61.8
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC---CcchHHHHHHHhh
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA---SAGDYVLLATIYA 403 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 403 (551)
+..++-..|+.++|+.+|++++.. -...+-.+.+.++..|++++|..++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555667777777777765543 1334555667888888888888888888887777 6666677778888
Q ss_pred hcCChhHHHHHHHHH
Q 048830 404 CTKDEEGVARTRKLI 418 (551)
Q Consensus 404 ~~g~~~~a~~~~~~m 418 (551)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 889988888877543
No 198
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.09 E-value=0.0057 Score=60.54 Aligned_cols=120 Identities=8% Similarity=-0.021 Sum_probs=97.4
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-C-----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHH
Q 048830 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-R-----DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192 (551)
Q Consensus 119 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 192 (551)
+.+.+......+++......+++.+..++-+... | -..+..++++.|.+.|..++++.++..=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3455666777788888888888888888766653 1 123456999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 048830 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238 (551)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 238 (551)
++.+|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988877766766666666666555
No 199
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.06 E-value=0.0013 Score=42.46 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 400 (551)
.+|..+..+|...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999998888764
No 200
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.03 E-value=0.35 Score=46.63 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=78.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHH
Q 048830 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309 (551)
Q Consensus 230 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 309 (551)
.-+.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-..+... .- .+.-|-.++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHH
Confidence 3355556778888888888888878888888888888888888876665432 11 34777888888888888888
Q ss_pred HHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 310 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
|..+...+ .+..-+.+|.++|++.+|.+.--+
T Consensus 256 A~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 88877653 124567888888888888776444
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.01 E-value=0.013 Score=49.64 Aligned_cols=113 Identities=15% Similarity=0.120 Sum_probs=73.1
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC--CccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 378 (551)
....++.+.+...++.+...+.-++ +... ..-+......+++ . -......++..+...|+++.|.
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~-~--~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRE-L--YLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHH-H--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHH-H--HHHHHHHHHHHHHhccCHHHHH
Confidence 3456778888888888776543222 2111 1112222222222 0 1235556777888999999999
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH-----hCCCccC
Q 048830 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK-----SNGIKTT 426 (551)
Q Consensus 379 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~ 426 (551)
..+++++..+|.+...|..++.+|...|+..+|.+.++.+. +.|+.|.
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 99999999999999999999999999999999999998774 3577764
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.01 E-value=0.19 Score=46.48 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=32.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHh
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVIN 351 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 351 (551)
+..-|.+.|.+..|..-++.+++.+.-.| ..+....++.+|...|..++|.++..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44456666666666666666666554333 34445556666666666666655543
No 203
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.00 E-value=0.65 Score=49.38 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHh-----cCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048830 236 AKCGNLDSAFCVFSR-----MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285 (551)
Q Consensus 236 ~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (551)
...|++++|.+++.. ...-+...-+.-+..+...+++.+..++-.++...
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 344555555555521 11123333333444455555555555555555554
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.049 Score=49.11 Aligned_cols=133 Identities=10% Similarity=-0.077 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchh-----
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG----- 331 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----- 331 (551)
...+.++..+.-.|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|..+|+...+. .-..+-...+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 3455667777777888888888888888765666677778888888899999999999877554 2222222222
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
.....|.-+.++.+|...+++ ++. |+..-|.-.-+..-.|+...|.+..+.+.+..|..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~-i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTE-ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhheecccchHHHHHHHhh-ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 333445566777777777776 433 55555554444455677777777777777777663
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.95 E-value=0.063 Score=52.15 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---C----HhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048830 230 ALVDMYAKCGNLDSAFCVFSRMRKR---D----VLSWNSMIVGYGV---HGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299 (551)
Q Consensus 230 ~li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 299 (551)
.|+-.|....+++...++.+.+... + ...--...-++-+ .|+.++|+.++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555677888888888888877653 1 1111223344555 7888888888888666556777777777766
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHH----HHH--------hhcC-CC-
Q 048830 300 GCSH---------QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL----EVI--------NTSS-PS- 356 (551)
Q Consensus 300 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~----~~~--------~~~~-~~- 356 (551)
.|-. ....++|...|.+. +.+.|+..+--.++.++...|.-.+.. ++- ++.. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 22366677777655 345565443333444444444322211 111 0000 01
Q ss_pred -CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 357 -DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 357 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
+--.+.+++.++.-.|+.++|.+++++++++.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3344455666666677777777777777766544
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.94 E-value=0.0032 Score=45.93 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=52.6
Q ss_pred hHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH
Q 048830 334 VDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397 (551)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 397 (551)
-..|.+.+++++|.+++++++.. ++..|......+...|++++|...++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 35678888888888888885544 78888888899999999999999999999999987765443
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.93 E-value=0.0039 Score=61.15 Aligned_cols=65 Identities=12% Similarity=-0.038 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc---hHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG---DYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+...|+.+..+|...|++++|+..|+++++++|+++. +|..++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6777888888888888888888888888888888774 3888888888888888888888777664
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.90 E-value=0.0075 Score=52.99 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=73.7
Q ss_pred HHHHHHhcC--CCCChhhHHHHHHHHHcC-----CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcc----------
Q 048830 40 YAQLLFNQI--QNPQTQAWNSLIRAFAQS-----LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV---------- 102 (551)
Q Consensus 40 ~A~~lf~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~---------- 102 (551)
--...|+.. ..+|..+|..+++.|.+. |..+-....+..|.+.|+. -|..+|+.||+.+=+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~-kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVE-KDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCc-ccHHHHHHHHHhCCCCCcccccHHHH
Confidence 345566665 467888888888888654 5566667778888888888 8888999988876542
Q ss_pred ------CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 103 ------KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 103 ------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
.+-+-|.+++++|...|+-||..++..|++.+.+.+.
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345677888888888888888888888888766654
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.85 E-value=0.5 Score=45.57 Aligned_cols=111 Identities=7% Similarity=0.079 Sum_probs=87.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 371 (551)
.+.+.-+.-|...|....|.++-... .+ |+...|...+.+|+..++|++-.++... ...+.-|..++.+|...
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHC
Confidence 45556667777888888887765444 55 8888999999999999999998887653 33788999999999999
Q ss_pred CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
|+..+|.....++ .+..-..+|.+.|.|.+|.+.-.+.
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999998887772 2356778899999999998865443
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.79 E-value=0.14 Score=46.12 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=83.9
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHh---
Q 048830 234 MYAKCGNLDSAFCVFSRMRK--R----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS--ITFLGLLCGCS--- 302 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~--- 302 (551)
.+...|++++|.+.|+.+.. | -..+.-.++.++.+.|++++|...+++.... -|+. .-+...+.+.+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 34455556666655555542 1 1123344555666666666666666666553 2221 11111111111
Q ss_pred ----------ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhc
Q 048830 303 ----------HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIH 371 (551)
Q Consensus 303 ----------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~ 371 (551)
..+...+|...|+.++++ |-......+|...+.. +.. -..---.+...|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~-l~~~la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAE-LRNRLAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 122334555555555544 3333344455444433 221 011112245678899
Q ss_pred CcHHHHHHHHHHHHhhcCCCc---chHHHHHHHhhhcCChhHHH
Q 048830 372 RNVEIGEIAMKNLVQLEAASA---GDYVLLATIYACTKDEEGVA 412 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 412 (551)
|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.+.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999998864 45678888999999888543
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.76 E-value=0.015 Score=55.51 Aligned_cols=256 Identities=14% Similarity=0.097 Sum_probs=156.1
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhh----HHHHHHHHhccCChHHHHHHHHHHHH----hCCC-CChhHHHHHHH
Q 048830 62 AFAQSLSPLQAIFYYNHMLMASLSRPDTFT----FTFTLKACERVKALNKCQELHGFVIR----SGYE-RCVVVSTNLMR 132 (551)
Q Consensus 62 ~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~ 132 (551)
-+++.|+....+.+|+..++.|- -|..| |+.|.++|.-.+++++|.+++..=+. .|-. -.......|.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT--eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT--EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc--hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 46788889999999999888875 35443 55666777777888888887654221 1100 01122233444
Q ss_pred HHHhCCCHHHHHHHhccCC-------C--CChhHHHHHHHHHHhcCC--------------------hHHHHHHHHHh--
Q 048830 133 GYAANGVIEAARSVFDNMP-------E--RDLVSWNSIISCYTQASF--------------------HLEALKLYERM-- 181 (551)
Q Consensus 133 ~y~~~g~~~~A~~~~~~m~-------~--~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m-- 181 (551)
.+--.|.+++|...-.+-. . ....++..+...|...|+ ++.|.++|.+=
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4555566666654432211 1 112234445555654432 22344444321
Q ss_pred --hhCCcc-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 048830 182 --RFEDVG-LDGFTLVCLLSSCAHVGALNMGIFLHRIACE----MGFV-ESVYVGNALVDMYAKCGNLDSAFCVFSRMR- 252 (551)
Q Consensus 182 --~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~- 252 (551)
.+.|-. .-...|..+.+.|.-.|+++.|...++.-+. .|-. .....+..|.++|.-.|+++.|.+.|....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 111110 1123455555666667889999988876443 2322 224567888999999999999999887643
Q ss_pred ------CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHH----c-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 253 ------KR--DVLSWNSMIVGYGVHGRGDEAISFFKQMLM----A-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 253 ------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
.+ ...+.-++...|.-..++++|+.++.+-.. . ...-....+.+|..+|...|..++|+.+.+.-++
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 23 334556678888888889999988876432 1 1223456788999999999999999887776544
No 212
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.16 Score=52.06 Aligned_cols=247 Identities=14% Similarity=0.033 Sum_probs=124.9
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-CChhH------------HHHHHHHHHhcCChHHHHHHHHHhhhCCcc
Q 048830 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVS------------WNSIISCYTQASFHLEALKLYERMRFEDVG 187 (551)
Q Consensus 121 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 187 (551)
.|.+..|..|.....+.-.++.|+..|-+... +.+.. -.+=|.+| -|++++|.++|-+|...++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 57788888888777777778888877766543 22111 11112222 3677777777766654432
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHH
Q 048830 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES----VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263 (551)
Q Consensus 188 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 263 (551)
.+...-+.|++-.+.++++. -|-..| ...++.+.+.++....+++|.+.|..-... ...+
T Consensus 766 --------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ 829 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQI 829 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHH
Confidence 23334445555444443321 111111 235566666666666666666665543311 1133
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCH
Q 048830 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343 (551)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 343 (551)
.+|.+..++++-+.+-+. ++-|....-.+...+...|.-++|.+.|-+. +. | ..-+..+....++
T Consensus 830 ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~----s~-p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR----SL-P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc----cC-c-----HHHHHHHHHHHHH
Confidence 444444444333333222 2334445556667777777777777766433 11 2 1345566667777
Q ss_pred HHHHHHHhhcCCC-CHHHHH--------------HHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh
Q 048830 344 EKALEVINTSSPS-DPVLWR--------------TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402 (551)
Q Consensus 344 ~~A~~~~~~~~~~-~~~~~~--------------~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 402 (551)
.+|.++-++ ... ...+.- --+..+++.|..-.|.+++.+|-+.+......|..+-..|
T Consensus 895 ~~avelaq~-~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklY 967 (1189)
T KOG2041|consen 895 GEAVELAQR-FQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLY 967 (1189)
T ss_pred HHHHHHHHh-ccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHH
Confidence 777777665 333 111110 0123344555555555555555555544444444443333
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.75 E-value=0.025 Score=52.82 Aligned_cols=91 Identities=10% Similarity=0.054 Sum_probs=50.1
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcC---CC---CHHHHHHHHHHHHhcCcH
Q 048830 302 SHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSS---PS---DPVLWRTLLGSCKIHRNV 374 (551)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~---~~~~~~~ll~~~~~~g~~ 374 (551)
.+.|++++|...|+.+++.+.-.+ ....+..+..+|...|++++|...|+..+ |. ....+-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344556666666666554432111 02334455555555666666655555533 22 333444445556667777
Q ss_pred HHHHHHHHHHHhhcCCCc
Q 048830 375 EIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 375 ~~a~~~~~~~~~~~p~~~ 392 (551)
+.|...++++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 777777777777777654
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.73 E-value=0.25 Score=50.37 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=64.0
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCC-----------CCChhhHHHHHHHHHcCCC--hhHHHHHHHHHHHcCC
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ-----------NPQTQAWNSLIRAFAQSLS--PLQAIFYYNHMLMASL 84 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~-----------~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~~~ 84 (551)
+-++-+.+-+..|... |.+++|.++----. .-+.-.++..-.+|.+-.+ +-+.+.-+++|.+.|-
T Consensus 554 ~~evp~~~~m~q~Iea--g~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIER--GLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhc--cchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 4444455555667777 88888765421100 0122223444455655444 3355555677888887
Q ss_pred CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHh
Q 048830 85 SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147 (551)
Q Consensus 85 ~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 147 (551)
. |+.... ...|+-.|.+.+|-++|. +.|.+ |-.+.+|.....+|.|.++.
T Consensus 632 ~-P~~iLl---A~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmyTDlRMFD~aQE~~ 681 (1081)
T KOG1538|consen 632 T-PNDLLL---ADVFAYQGKFHEAAKLFK---RSGHE------NRALEMYTDLRMFDYAQEFL 681 (1081)
T ss_pred C-chHHHH---HHHHHhhhhHHHHHHHHH---HcCch------hhHHHHHHHHHHHHHHHHHh
Confidence 7 877643 445666788888888774 33432 23455555555555555543
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.72 E-value=0.011 Score=55.22 Aligned_cols=94 Identities=11% Similarity=0.032 Sum_probs=76.8
Q ss_pred cchhhhhHHHhhcCCHHHHHHHHhhcCCC---C---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHH
Q 048830 328 KHYGCLVDLYGRAGKLEKALEVINTSSPS---D---PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLL 398 (551)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 398 (551)
..|..-+..+.+.|++++|...|+..+.. + +..+.-+..+|...|+++.|...|+++++..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555556667789999999998874432 2 4677788899999999999999999999988875 5567778
Q ss_pred HHHhhhcCChhHHHHHHHHHHhC
Q 048830 399 ATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.+|...|++++|.++++...+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 216
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.68 E-value=0.013 Score=46.73 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=72.9
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC----cchHHHHHHHhhhcCCh
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS----AGDYVLLATIYACTKDE 408 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 408 (551)
++...|+++.|++.|.+++.. .+..||.-..+++-.|+.++|+.-+++++++..+. -..|+.-+.+|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567788999999988875544 88999999999999999999999999999985332 23677888899999999
Q ss_pred hHHHHHHHHHHhCCC
Q 048830 409 EGVARTRKLIKSNGI 423 (551)
Q Consensus 409 ~~a~~~~~~m~~~g~ 423 (551)
+.|+.-|+..-+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999988877664
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.56 E-value=0.41 Score=43.01 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=26.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHH
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKA 346 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 346 (551)
+..-|.+.|.+..|..-++.+++.+.-.+ .......++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 44556666666666666666666543332 123444555666666655533
No 218
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.55 E-value=0.26 Score=39.66 Aligned_cols=141 Identities=11% Similarity=0.119 Sum_probs=85.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHH
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 345 (551)
+.-.|..++..++..+..... +..-++-++.-....-+-+-..+.++..-+-+.+. .+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 345678888888888877642 44555555554444444455556666553332222 2344444
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 346 ALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 346 A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
...-+-. +..+.......+.+....|.-+.-.+++..+.+.+..+|.....++++|.+.|+..++.+++.++-++|++
T Consensus 75 Vi~C~~~-~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAK-RNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHH-hcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4443333 33344555667778888999999999999998777777999999999999999999999999999999874
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.028 Score=54.06 Aligned_cols=64 Identities=3% Similarity=-0.106 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
..++..|..+|.+.+++..|+....++++++|+|..+...-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567788888999999999999999999999999999999999999999999999999999763
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.39 E-value=1 Score=43.41 Aligned_cols=241 Identities=14% Similarity=0.089 Sum_probs=146.5
Q ss_pred cCChHHHHHHHHHhhhCCcccCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 048830 168 ASFHLEALKLYERMRFEDVGLDGF--TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245 (551)
Q Consensus 168 ~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 245 (551)
.|+++.|.+-|+.|... |... -...+.-.--+.|..+.|.+.-+..-..- +.-...+.+.+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 46666666666666531 2111 11112222234566666666555554432 112456667777777778888887
Q ss_pred HHHHhcC-----CCCHh--HHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccCCHHHHHHHH
Q 048830 246 CVFSRMR-----KRDVL--SWNSMIVGYG---VHGRGDEAISFFKQMLMAGFHPDSIT-FLGLLCGCSHQGLVEEGVEYF 314 (551)
Q Consensus 246 ~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~ 314 (551)
++.+.-. ++|.. .-..|+.+-+ -.-+...|...-.+..+ +.||..- -..-..++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 7777543 23332 1122222211 12334555554444443 5676543 233456788999999999999
Q ss_pred HHhHHhcCCCCCccchhhhhHHHhhcCCHHHHH----HHHhhcCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcC
Q 048830 315 HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL----EVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 315 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~----~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 389 (551)
+.+-+ ..|.+.++... .+.+.|+..... +-++. |+. +..+.-.+..+-...|++..|..-.+.+....|
T Consensus 287 E~aWK---~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~s-lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 287 ETAWK---AEPHPDIALLY--VRARSGDTALDRLKRAKKLES-LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHHHh---cCCChHHHHHH--HHhcCCCcHHHHHHHHHHHHh-cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 98864 45655444332 234555432221 22344 555 888888888898999999999999999999998
Q ss_pred CCcchHHHHHHHhhhc-CChhHHHHHHHHHHhC
Q 048830 390 ASAGDYVLLATIYACT-KDEEGVARTRKLIKSN 421 (551)
Q Consensus 390 ~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 421 (551)
. .+.|..|+++-... |+-.+++..+-+..+.
T Consensus 361 r-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 361 R-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred h-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8 66888999887766 9999998888776553
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.38 E-value=0.0077 Score=44.58 Aligned_cols=61 Identities=11% Similarity=-0.002 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhc----CC---CcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLE----AA---SAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
.+++.+...|...|++++|+..+++++++. ++ -..++..++.+|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456667777777777777777777777542 11 24578889999999999999999988764
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.34 E-value=0.0059 Score=45.20 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=16.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
.+++.+...|...|++++|+..|++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455556666666666666666665543
No 223
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.20 E-value=2.5 Score=46.64 Aligned_cols=156 Identities=22% Similarity=0.196 Sum_probs=89.4
Q ss_pred CCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217 (551)
Q Consensus 138 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 217 (551)
++++.|+.-+.++. ...|+-.+..--+.|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 45555555555543 223444444444566666666664 67777776666665431 11
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh--hHH
Q 048830 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI--TFL 295 (551)
Q Consensus 218 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~ 295 (551)
+. ..|+--.-+|.++|+.++|.+. |...|+|.+|+.+-.+|... -|.. +-.
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILAE 1003 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHHH
Confidence 11 1122233456777777777554 44567888888777766431 1221 124
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 296 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
.|..-+...+++-+|-++..+.... ..--+..|++.-.+++|..+...
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 5666677777777777776666432 23455667777778888777655
No 224
>PRK11906 transcriptional regulator; Provisional
Probab=96.15 E-value=0.064 Score=53.01 Aligned_cols=79 Identities=14% Similarity=0.038 Sum_probs=64.4
Q ss_pred CHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 342 KLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 342 ~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
...+|.++.++++.. |+.....+..+....++.+.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++.
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666665555 88888888887788888999999999999999999999999999999999999999888875
Q ss_pred Hh
Q 048830 419 KS 420 (551)
Q Consensus 419 ~~ 420 (551)
.+
T Consensus 399 lr 400 (458)
T PRK11906 399 LQ 400 (458)
T ss_pred hc
Confidence 54
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.064 Score=51.68 Aligned_cols=136 Identities=10% Similarity=-0.057 Sum_probs=97.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCC
Q 048830 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342 (551)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 342 (551)
...|.+.|++..|...|++.... |. +...-+.++...... .-..++..|.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 55677888888888888876642 00 111111122222111 112346667788889999
Q ss_pred HHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHH-HHHHHHH
Q 048830 343 LEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV-ARTRKLI 418 (551)
Q Consensus 343 ~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 418 (551)
+.+|++.-++++.. |.-..--=..+|...|+++.|+..|+++++++|.|..+-..|+.+-.+.....+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888775655 7777777778999999999999999999999999999888888888887776655 6788888
Q ss_pred Hh
Q 048830 419 KS 420 (551)
Q Consensus 419 ~~ 420 (551)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
No 226
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.03 E-value=0.061 Score=43.81 Aligned_cols=52 Identities=10% Similarity=0.210 Sum_probs=38.9
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHH
Q 048830 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337 (551)
Q Consensus 286 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 337 (551)
...|+..+..+++.+|+..+++..|.++.+...+.|+++-+..+|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567778888888888888888888888888887777666666776666543
No 227
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=2.9 Score=43.84 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=65.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHH
Q 048830 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311 (551)
Q Consensus 232 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 311 (551)
+.-+..-|+..+|.++-.+..=||-..|-.-+.+++..+++++-+++-+.+. .+.-|.....+|.+.|+.++|.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHh
Confidence 3334555777777777777776777777666777777777766555444332 1344556667777777777777
Q ss_pred HHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 312 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
+++.+.. +. .-.+.+|.+.|++.+|.++--+
T Consensus 765 KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 765 KYIPRVG---GL-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhhccC---Ch-------HHHHHHHHHhccHHHHHHHHHH
Confidence 7665441 11 1456677777777777665433
No 228
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.14 Score=47.61 Aligned_cols=108 Identities=8% Similarity=-0.039 Sum_probs=83.4
Q ss_pred HHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC---CHHHHHHHhccCC
Q 048830 75 YYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG---VIEAARSVFDNMP 151 (551)
Q Consensus 75 l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~ 151 (551)
-++.-+..++ -|...|-.|..+|...|+++.|...|....+.. ++++..+..+..++.... +..++..+|+++.
T Consensus 144 ~Le~~L~~nP--~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 144 RLETHLQQNP--GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHhCC--CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 3344445554 578899999999999999999999999998874 567777777776654432 3567889999887
Q ss_pred C---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 048830 152 E---RDLVSWNSIISCYTQASFHLEALKLYERMRFED 185 (551)
Q Consensus 152 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 185 (551)
. .|+.+-..|...+...|++.+|...|+.|.+..
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 5 356677778888999999999999999998763
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.73 E-value=1.5 Score=39.48 Aligned_cols=192 Identities=17% Similarity=0.092 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMR-----KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 299 (551)
..........+...+++..+...+.... ......+......+...++..++...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444555555556666666555555443 12334444555555556666666666666655332221 11111222
Q ss_pred -HHhccCCHHHHHHHHHHhHHhcCCCC----CccchhhhhHHHhhcCCHHHHHHHHhhcCCC--C--HHHHHHHHHHHHh
Q 048830 300 -GCSHQGLVEEGVEYFHMMVSRYNLKP----GIKHYGCLVDLYGRAGKLEKALEVINTSSPS--D--PVLWRTLLGSCKI 370 (551)
Q Consensus 300 -~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~ll~~~~~ 370 (551)
.+...|+++.|...+..... ..| ....+......+...++.++|...+.+++.. + ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 55666666777666666632 222 2222333333355566777777776664443 2 4556666677777
Q ss_pred cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.++.+.+...+.......|.....+..+...+...|.++++...+.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777776555666666666666667777777766554
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.69 E-value=2.2 Score=41.24 Aligned_cols=304 Identities=14% Similarity=0.036 Sum_probs=178.3
Q ss_pred ChHHHHHHHhcCCCCChhhHHHHHHHHH--cCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHH--hccCChHHHHHHH
Q 048830 37 SLSYAQLLFNQIQNPQTQAWNSLIRAFA--QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC--ERVKALNKCQELH 112 (551)
Q Consensus 37 ~~~~A~~lf~~~~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~--~~~~~~~~a~~~~ 112 (551)
....+.+.|..-.. -.-|.+|-.++. -.|+-..|.++-.+.... +. -|...+..++.+- .-.|+.+.|.+-|
T Consensus 68 sP~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-ls-sDqepLIhlLeAQaal~eG~~~~Ar~kf 143 (531)
T COG3898 68 SPYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LS-SDQEPLIHLLEAQAALLEGDYEDARKKF 143 (531)
T ss_pred CcHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hh-ccchHHHHHHHHHHHHhcCchHHHHHHH
Confidence 35556666654321 223455554443 345666666665554322 12 4666666666553 3458888888888
Q ss_pred HHHHHhCCCCChhHH--HHHHHHHHhCCCHHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCC-c
Q 048830 113 GFVIRSGYERCVVVS--TNLMRGYAANGVIEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHLEALKLYERMRFED-V 186 (551)
Q Consensus 113 ~~~~~~g~~~~~~~~--~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 186 (551)
+.|... |..... ..|.---.+.|+.+.|++.-+..-+ | -...|.+.+...+..|+|+.|+++.+.-+... +
T Consensus 144 eAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi 220 (531)
T COG3898 144 EAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI 220 (531)
T ss_pred HHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 888642 222211 1222223466777777776665543 2 23467778888888888888888887765433 3
Q ss_pred ccCHH--HHHHHHHHHHh---cCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcCC--CCHhH
Q 048830 187 GLDGF--TLVCLLSSCAH---VGALNMGIFLHRIACEMGFVESVYVG-NALVDMYAKCGNLDSAFCVFSRMRK--RDVLS 258 (551)
Q Consensus 187 ~p~~~--t~~~ll~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~ 258 (551)
.++.. .-..++.+-+. ..+...|...-.+..+ +.||..-- -.-..+|.+.|++.++-.+++.+-+ |.+..
T Consensus 221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 34433 22333333221 2345566666555555 34443222 2234678888888888888888764 44443
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHH
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLM-AGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 336 (551)
|. +..+.+.|+ .++.-+++... ..++||. .....+..+-...|++..|..--+... ...|....|..|.+.
T Consensus 299 a~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdI 371 (531)
T COG3898 299 AL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADI 371 (531)
T ss_pred HH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHH
Confidence 33 223334444 44555554443 2356655 556667777788888888877666554 567888888888877
Q ss_pred Hh-hcCCHHHHHHHHhhcCCC
Q 048830 337 YG-RAGKLEKALEVINTSSPS 356 (551)
Q Consensus 337 ~~-~~g~~~~A~~~~~~~~~~ 356 (551)
-. ..|+-.++...+-+++..
T Consensus 372 eeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 372 EEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhhccCchHHHHHHHHHHhcC
Confidence 64 448888888888776654
No 231
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.65 E-value=3.8 Score=43.79 Aligned_cols=77 Identities=8% Similarity=-0.054 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcC
Q 048830 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204 (551)
Q Consensus 126 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 204 (551)
.-..-+..+.+.++++...+.+..- ..+...-.....+....|+.++|......+-..| .........++..+.+.|
T Consensus 101 Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 3344455566777787777744332 2344445566667777788777766666665444 223344455555554444
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.65 E-value=0.071 Score=45.03 Aligned_cols=70 Identities=13% Similarity=0.042 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH-----hCCCCChhHH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR-----SGYERCVVVS 127 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~ 127 (551)
...++..+...|++++|+.+.+.+....+ -|...|..+|.++...|+...|.+.|..+.+ .|++|++.+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44566677889999999999999998876 5788999999999999999999999988753 5888887654
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.58 E-value=0.13 Score=42.50 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=38.2
Q ss_pred hhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 338 GRAGKLEKALEVINTSSPS-------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
.+.|++++|.+.|+. +.. ....--.|+.++.+.+++++|...+++.++++|.++.
T Consensus 21 l~~~~Y~~A~~~le~-L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEA-LDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHH-HHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 345666666665555 322 3444556777888888899999999999999988754
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.57 E-value=0.22 Score=47.25 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=24.2
Q ss_pred HHhcCChHHHHHHHHHhhhCC--cccCHHHHHHHHHHHHhcCChHHHHH
Q 048830 165 YTQASFHLEALKLYERMRFED--VGLDGFTLVCLLSSCAHVGALNMGIF 211 (551)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~ 211 (551)
+....+.++|+..|.+-...- ...--.+|..+..+.+..|..+++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 345566677777766654321 11122355555556666665555543
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.44 E-value=1.5 Score=44.51 Aligned_cols=159 Identities=11% Similarity=-0.000 Sum_probs=100.7
Q ss_pred HHHHcCCChhHHHHHHHHHH-HcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 61 RAFAQSLSPLQAIFYYNHML-MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 61 ~~~~~~g~~~~A~~l~~~m~-~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
....-.++++++.++.+.-. -..+ | ..-.+.+++.+-+.|..+.|+++- .|+. .-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~-~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--P-KDQGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--C-hhHHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCC
Confidence 34456678888776665211 1111 3 445677888888888888888763 3332 34566778999
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 048830 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219 (551)
Q Consensus 140 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 219 (551)
++.|.++-++.. +...|..|.....+.|+++-|.+.|.+... +..++-.|.-.|+.+.-.++.......
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999887776 566899999999999999999999987753 455666677778887777777776665
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 048830 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 220 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 251 (551)
|- +|....++...|+.++..+++.+.
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 52 344445555667777777666553
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.41 E-value=0.11 Score=47.38 Aligned_cols=101 Identities=18% Similarity=0.137 Sum_probs=80.9
Q ss_pred HHHHHHHhcC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC----------
Q 048830 243 SAFCVFSRMR--KRDVLSWNSMIVGYGVH-----GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG---------- 305 (551)
Q Consensus 243 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---------- 305 (551)
..+..|.... ++|-.+|-+++..|..+ +.++=....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677666 67888898888888654 557777778899999999999999999999876543
Q ss_pred ------CHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHH
Q 048830 306 ------LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344 (551)
Q Consensus 306 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 344 (551)
.-+-++.++++| +.+|+.||.++-..|++++++.+..-
T Consensus 132 F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 234588999999 45699999999999999999988643
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.38 E-value=0.84 Score=43.45 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=31.0
Q ss_pred HHhccCCHHHHHHHHHHhHHh---cCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC
Q 048830 300 GCSHQGLVEEGVEYFHMMVSR---YNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 356 (551)
++...|.+..|.+.-++..+- .|-.| ......++.+.|...|+.+.|..-|+++|..
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 444555555555555544331 12222 2334456667777777777777777665544
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.37 E-value=1.4 Score=43.15 Aligned_cols=73 Identities=15% Similarity=-0.007 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCHHHHHHHhccCCCC-------ChhHHHHHHHHHHh---cCChHHHHHHHHHhhhCCcccCHHHHHHHH
Q 048830 128 TNLMRGYAANGVIEAARSVFDNMPER-------DLVSWNSIISCYTQ---ASFHLEALKLYERMRFEDVGLDGFTLVCLL 197 (551)
Q Consensus 128 ~~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 197 (551)
..|+-.|-...+++..+++++.+... ....-.....++.+ .|+.++|++++..+......++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888888888888888753 11122233445556 788888999888866666677888887777
Q ss_pred HHH
Q 048830 198 SSC 200 (551)
Q Consensus 198 ~~~ 200 (551)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 665
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.35 E-value=0.86 Score=46.75 Aligned_cols=158 Identities=15% Similarity=0.109 Sum_probs=102.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH-----hhHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCCccc
Q 048830 260 NSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDS-----ITFLGLLCGCSH----QGLVEEGVEYFHMMVSRYNLKPGIKH 329 (551)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~ 329 (551)
..+++...-.|+-+.+++.+.+..+.+ +.-.. .+|..++..++. ....+.|.++++.+.++| |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 344455555666666666666554421 11111 123333433332 456788999999887653 55444
Q ss_pred hh-hhhHHHhhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH-HHH
Q 048830 330 YG-CLVDLYGRAGKLEKALEVINTSSPS-------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL-LAT 400 (551)
Q Consensus 330 ~~-~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~ 400 (551)
|. .-...+...|++++|.+.|++++.. ....+--++..+....++++|...+.++.+.+.-+...|.. .+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 43 3346677789999999999975643 34445556667778899999999999999987776666665 445
Q ss_pred HhhhcCCh-------hHHHHHHHHHHh
Q 048830 401 IYACTKDE-------EGVARTRKLIKS 420 (551)
Q Consensus 401 ~~~~~g~~-------~~a~~~~~~m~~ 420 (551)
++...|+. ++|.+++.+...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 56667888 888888887754
No 240
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.32 E-value=3.2 Score=40.80 Aligned_cols=148 Identities=12% Similarity=-0.021 Sum_probs=87.0
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--Ccc
Q 048830 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP---DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP--GIK 328 (551)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~ 328 (551)
....+|..+...+.+.|+++.|...+.++...+..+ +......-+......|+..+|...++...+. .+.. +..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 455678888999999999999999999888754222 3334444556667788889999988888762 1111 111
Q ss_pred chhhhhHHHhhcCCHHHHHHHH-hhcCCC--CHHHHHHHHHHHHhc------CcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 329 HYGCLVDLYGRAGKLEKALEVI-NTSSPS--DPVLWRTLLGSCKIH------RNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~-~~~~~~--~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
....+...+.. ..+.....- .. ... -...+..+...+... ++.+.+...|+.+.++.|.....|..++
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDK-ESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred cHHHHhhcccc--ccccccccchhh-hhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 11111111100 000000000 00 000 123344444444444 8899999999999999998888888777
Q ss_pred HHhhhc
Q 048830 400 TIYACT 405 (551)
Q Consensus 400 ~~~~~~ 405 (551)
..+.+.
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 666443
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.27 E-value=0.088 Score=51.96 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=27.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCc----cchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI----KHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
..++.+..+|...|++++|...|++.+ .+.|+. ..|..+..+|...|++++|++.+++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555555555555555555543 233432 1244445555555555555555544
No 242
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=5 Score=42.23 Aligned_cols=305 Identities=10% Similarity=0.013 Sum_probs=165.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC---HHHHHHHhccCCC--CChhHHHHHHHHHHhc
Q 048830 94 FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV---IEAARSVFDNMPE--RDLVSWNSIISCYTQA 168 (551)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 168 (551)
.+++-+...+.+..|.++-..+-..-.. ...++.....-+.+..+ -+.+..+-+++.. ...++|..+..--...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 3455566667777777776555321111 14566666666666532 2334444444444 4556777777777788
Q ss_pred CChHHHHHHHHHhhhCCcc----cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-----------CCCchhHHHHHHH
Q 048830 169 SFHLEALKLYERMRFEDVG----LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG-----------FVESVYVGNALVD 233 (551)
Q Consensus 169 g~~~~A~~~~~~m~~~~~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----------~~~~~~~~~~li~ 233 (551)
|+.+-|..+++.=...+.. .+-.-+...+.-+...|+.+....+.-.+.+.- .+....+|.-++.
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 8888888776532221110 011123344555566666666555554443321 1111122221111
Q ss_pred ---------HHHhcCCHHHHHHHHH--hcC-----CCCHhHHHHHHHHHHhcCC---hHHH-------HHHHHHHHH-cC
Q 048830 234 ---------MYAKCGNLDSAFCVFS--RMR-----KRDVLSWNSMIVGYGVHGR---GDEA-------ISFFKQMLM-AG 286 (551)
Q Consensus 234 ---------~y~~~g~~~~A~~~~~--~~~-----~~~~~~~~~li~~~~~~g~---~~~A-------~~~~~~m~~-~g 286 (551)
.|-. ++-..+...|. ... +.-..........+.+... -.+| +.+.+.+.. .|
T Consensus 601 ~~~~~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~ 679 (829)
T KOG2280|consen 601 HQDRATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFG 679 (829)
T ss_pred hhchhhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 11111111111 100 0111111122233333222 1111 122222222 23
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHH
Q 048830 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366 (551)
Q Consensus 287 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~ 366 (551)
..-...|.+--+.-+...|...+|.++-.+. . .||...|-.=+.+++..+++++-+++-++ .+ .+.-|.-+..
T Consensus 680 ~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAks-kk-sPIGy~PFVe 752 (829)
T KOG2280|consen 680 GSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAKS-KK-SPIGYLPFVE 752 (829)
T ss_pred cccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhc-cC-CCCCchhHHH
Confidence 3344455666666777788888888876655 2 37888888888899999999988888776 55 3777888889
Q ss_pred HHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHH
Q 048830 367 SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 415 (551)
+|.+.|+.++|...+-+.-. +.-...+|.+.|++.+|.+.-
T Consensus 753 ~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence 99999999998887655422 225677888889988887754
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=95.17 E-value=0.95 Score=45.04 Aligned_cols=155 Identities=11% Similarity=0.071 Sum_probs=104.7
Q ss_pred hHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-cCCCCCH-hhHHHHHHHHhc---------cCCHHHHHHHHHHhH
Q 048830 257 LSW--NSMIVGYGVH-----GRGDEAISFFKQMLM-AGFHPDS-ITFLGLLCGCSH---------QGLVEEGVEYFHMMV 318 (551)
Q Consensus 257 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~~~ 318 (551)
..| ..++.+.... ...+.|+.+|.+... ..+.|+. ..|..+..++.. .....+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 6666655442 235678888988883 2356664 334333333221 223455666666665
Q ss_pred HhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcch
Q 048830 319 SRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394 (551)
Q Consensus 319 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 394 (551)
.+.| |......+..++.-.|+++.|..+|+++... .+..|......+.-.|+.++|.+.+++.++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 4455 6777777888888888999999999986654 67777777777888999999999999999999986544
Q ss_pred HH--HHHHHhhhcCChhHHHHHH
Q 048830 395 YV--LLATIYACTKDEEGVARTR 415 (551)
Q Consensus 395 ~~--~l~~~~~~~g~~~~a~~~~ 415 (551)
-. ..+++|...+ .++|.+++
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHH
Confidence 33 3444676664 56666665
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.11 E-value=0.05 Score=32.53 Aligned_cols=32 Identities=9% Similarity=-0.022 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888888999999999999999998886
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.11 E-value=0.37 Score=39.25 Aligned_cols=48 Identities=10% Similarity=0.004 Sum_probs=26.5
Q ss_pred cccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCchhHHHHHHH
Q 048830 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM-GFVESVYVGNALVD 233 (551)
Q Consensus 186 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~ 233 (551)
..|+..+..+++.+|+..+++..|.++.+...+. +++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455666666666666666666666665555442 44444555555543
No 246
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.09 E-value=3.9 Score=40.45 Aligned_cols=334 Identities=13% Similarity=0.070 Sum_probs=183.8
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC--------CChhhHHHHHHHHHcC--------CC-------hhHHHH
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN--------PQTQAWNSLIRAFAQS--------LS-------PLQAIF 74 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~--------~~~~~~~~li~~~~~~--------g~-------~~~A~~ 74 (551)
+|...-+..+..+... |++.+++.++++|.+ -|+.+||.++-.+.++ .. ++.++-
T Consensus 126 ~df~l~~i~a~sLIe~--g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilf 203 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIET--GRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILF 203 (549)
T ss_pred hHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHH
Confidence 4556667778888888 999999999988752 3788888744333222 11 122222
Q ss_pred HHHHHHHc------CCCCCChhhHHHHHHHHhcc--CChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhCCCHHHHHH
Q 048830 75 YYNHMLMA------SLSRPDTFTFTFTLKACERV--KALNKCQELHGFVIRSGYERCVV-VSTNLMRGYAANGVIEAARS 145 (551)
Q Consensus 75 l~~~m~~~------~~~~pd~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~ 145 (551)
...+|... .+. |....+..++....-. ..+.--.+++..-...-+.|+-. +...|+.-+.+ +.+++..
T Consensus 204 Y~kki~~~d~~~Y~k~~-peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 204 YLKKIHAFDQRPYEKFI-PEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred HHHHHHHHhhchHHhhC-cHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 23333221 122 4444444444433221 12222233333333333455433 33445555544 3344333
Q ss_pred HhccC--------CCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHH-------HHHHHH----hcCCh
Q 048830 146 VFDNM--------PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC-------LLSSCA----HVGAL 206 (551)
Q Consensus 146 ~~~~m--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-------ll~~~~----~~~~~ 206 (551)
+-+.+ .+.=+.++..++...++.++..+|-+.+.-+.-. .|+...-.- +-+..+ ...+.
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 33222 1234567888899999999999998888766542 343321111 111111 11122
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHH---HHHHhcCC-HHHHHHHHHhcCC---CCHhHHHHHHH----HHHhc---CCh
Q 048830 207 NMGIFLHRIACEMGFVESVYVGNALV---DMYAKCGN-LDSAFCVFSRMRK---RDVLSWNSMIV----GYGVH---GRG 272 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~~~~~~~~~li---~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~----~~~~~---g~~ 272 (551)
..-..+|+.+...++... ....-|+ .-+.+.|. -++|..+++.+.+ -|...-|.... .|.+. ...
T Consensus 359 r~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 233344444444333211 1112222 23445555 7888888887764 45544443322 23221 234
Q ss_pred HHHHHHHHHHHHcCCCCCHhh----HHHHHH--HHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHH
Q 048830 273 DEAISFFKQMLMAGFHPDSIT----FLGLLC--GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346 (551)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~t----~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 346 (551)
.+-+.+-+-..+.|+.|-.+. -+.|.. .+...|++.++.-+-..+. .+.|++.+|..++-.+....++++|
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHH
Confidence 444455555566788775443 233332 2445788988887766664 5889999999999999999999999
Q ss_pred HHHHhhcCCCCHHHHHH
Q 048830 347 LEVINTSSPSDPVLWRT 363 (551)
Q Consensus 347 ~~~~~~~~~~~~~~~~~ 363 (551)
.+++.. +|.+..+|++
T Consensus 515 ~~~l~~-LP~n~~~~ds 530 (549)
T PF07079_consen 515 WEYLQK-LPPNERMRDS 530 (549)
T ss_pred HHHHHh-CCCchhhHHH
Confidence 999999 9886666654
No 247
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.04 E-value=4.8 Score=41.26 Aligned_cols=180 Identities=14% Similarity=0.103 Sum_probs=113.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG- 300 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~- 300 (551)
..+|+..++--.+.|+.+.+.-+|++..-| =...|--.+.-....|+.+-|-.++....+-- .|+......+-..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHHH
Confidence 345556666666666776666666665543 12334444444444466666666665544432 2222222222222
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHhhcCCHHHHH---HHHhhcCCC--CHHHHHHHH-----HHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEKAL---EVINTSSPS--DPVLWRTLL-----GSCK 369 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~--~~~~~~~ll-----~~~~ 369 (551)
+-..|+.+.|..+++.+.+. . |+ +..-..-+....+.|..+.+. +++....+. +..+...+. --+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 34568999999999999775 3 64 333344566777889999888 666553333 444444333 2345
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCCh
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 408 (551)
..++.+.|..++.++.+..|.+...|..+.+.....+..
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 678999999999999999999999999999888777643
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.02 E-value=0.076 Score=31.60 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
..|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457777888888888888888888888888864
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.99 E-value=0.66 Score=46.94 Aligned_cols=133 Identities=19% Similarity=0.249 Sum_probs=76.7
Q ss_pred HHHhcCChHHHHHHHHHHH-HcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCH
Q 048830 265 GYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343 (551)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 343 (551)
.....++++++.++.+.-. -..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 3445666776665554111 11111 23355666667777777777766443322 23455677888
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 344 EKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 344 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
+.|.++.++ .+ +...|..|.......|+++.|+..|++. ..+..|.-.|...|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~-~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKE-LD-DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCC-CS-THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh-cC-cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 888777666 44 6778888888888888888888887763 346667777777777776666666655544
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.94 E-value=1.2 Score=44.39 Aligned_cols=99 Identities=8% Similarity=0.081 Sum_probs=71.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHH
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLG 366 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~ 366 (551)
+=..+..++.+.|+.++|.+.+.+|.+.+...-...+...|+..|...+.+.++..++.+ -+. -...|++.+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k-YdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK-YDDISLPKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH-hccccCCchHHHHHHHHHH
Confidence 334567777889999999999999987643333455777899999999999999999877 442 3456666554
Q ss_pred HHHhcCc---------------HHHHHHHHHHHHhhcCCCc
Q 048830 367 SCKIHRN---------------VEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 367 ~~~~~g~---------------~~~a~~~~~~~~~~~p~~~ 392 (551)
-.+..++ -..|.+++.++.+.+|..|
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 4443333 2346688899999888754
No 251
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.83 E-value=1.5 Score=38.75 Aligned_cols=177 Identities=16% Similarity=0.086 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHhcC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 048830 239 GNLDSAFCVFSRMR--KR-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315 (551)
Q Consensus 239 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 315 (551)
|-++-|+--|.... .| -+..||-+.--+...|+++.|.+.|+...+....-+ .+...-.-++--.|++..|.+=|.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHH
Confidence 34444444444332 23 345677777777788888888888887776532212 222222223445677777776665
Q ss_pred HhHHhcCCCCCccchhhhhH-HHhhcCCHHHHH-HHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC--
Q 048830 316 MMVSRYNLKPGIKHYGCLVD-LYGRAGKLEKAL-EVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS-- 391 (551)
Q Consensus 316 ~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-- 391 (551)
..-+ -.|+.. |.+|-- .--..-++.+|. .+.++++..|...|..-+-.+.-.. .. .+.+++++.+...++
T Consensus 158 ~fYQ---~D~~DP-fR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgk-iS-~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 158 AFYQ---DDPNDP-FRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGK-IS-EETLMERLKADATDNTS 231 (297)
T ss_pred HHHh---cCCCCh-HHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhh-cc-HHHHHHHHHhhccchHH
Confidence 5533 233211 222211 112233556665 4455545557777777665543222 11 123444444433332
Q ss_pred -----cchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 392 -----AGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 392 -----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
..+|..|+.-|...|..++|..+|+.....+
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999876543
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.73 E-value=5.9 Score=40.73 Aligned_cols=157 Identities=13% Similarity=0.039 Sum_probs=89.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChh------hHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHH
Q 048830 58 SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF------TFTFTLKACER----VKALNKCQELHGFVIRSGYERCVVVS 127 (551)
Q Consensus 58 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~------~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 127 (551)
.+++...=.|+-+.+++++.+..+.+-. -.+. .|..++..+.. ..+.+.+.+++..+.+. -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i-~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENI-RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 3444555667777888877776553211 1111 23333333332 34667788888877765 3444433
Q ss_pred H-HHHHHHHhCCCHHHHHHHhccCCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHH
Q 048830 128 T-NLMRGYAANGVIEAARSVFDNMPE-------RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199 (551)
Q Consensus 128 ~-~li~~y~~~g~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 199 (551)
. .-...+...|++++|++.|+.... -....+--+.-.+.-..+|++|...|..+.+.. .-+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 3 334566777888888888876443 112234445555677778888888888887643 2234455544444
Q ss_pred H-HhcCCh-------HHHHHHHHHHHH
Q 048830 200 C-AHVGAL-------NMGIFLHRIACE 218 (551)
Q Consensus 200 ~-~~~~~~-------~~a~~~~~~~~~ 218 (551)
| ...++. ++|..++.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4 344555 666666665543
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.72 E-value=0.23 Score=45.56 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcC---CC---CHHHHHHHHHHHHhcCcHHH
Q 048830 304 QGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSS---PS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
.|++..|.+.|...+++|.-.+ ....+--|...+...|++++|..+|..+. |. -+...--|.......|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 3445555555555544331111 12222334444444444444444443311 11 22333333444444555555
Q ss_pred HHHHHHHHHhhcCCCc
Q 048830 377 GEIAMKNLVQLEAASA 392 (551)
Q Consensus 377 a~~~~~~~~~~~p~~~ 392 (551)
|...++++.+.-|..+
T Consensus 234 A~atl~qv~k~YP~t~ 249 (262)
T COG1729 234 ACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHCCCCH
Confidence 5555555555555543
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.68 E-value=3.1 Score=37.28 Aligned_cols=196 Identities=19% Similarity=0.115 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-HhHHHHHHH-H
Q 048830 191 FTLVCLLSSCAHVGALNMGIFLHRIACEM-GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD-VLSWNSMIV-G 265 (551)
Q Consensus 191 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~ 265 (551)
..+......+...+....+...+...... ........+..+...+...+++..+.+.+..... ++ ......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33344444444445555444444444331 1223344445555555555666666666665543 11 122222233 5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC----CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhc
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHP----DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRA 340 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 340 (551)
+...|+.+.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 7777888888888877754 233 2233334444456677888888888877642 222 356677777788888
Q ss_pred CCHHHHHHHHhhcCCC--C-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 341 GKLEKALEVINTSSPS--D-PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 341 g~~~~A~~~~~~~~~~--~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
++++.|...+..+... + ...+..+...+...+..+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888888888774544 2 345555555555677789999999999888876
No 255
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.64 E-value=0.12 Score=44.71 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=68.2
Q ss_pred HHhhcCCHHHHHHHHhhcCCC--------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 336 LYGRAGKLEKALEVINTSSPS--------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
-+.+.|++++|..-|..++.. -...|..-..++.+.+..+.|+....++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 345667777777666654433 344555666778888999999999999999999888888888899999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 048830 408 EEGVARTRKLIKSNGI 423 (551)
Q Consensus 408 ~~~a~~~~~~m~~~g~ 423 (551)
+++|+.=++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999988876443
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.60 E-value=0.2 Score=40.14 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=49.8
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC----CHH---HHHHHHHHHHhcC
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS----DPV---LWRTLLGSCKIHR 372 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~---~~~~ll~~~~~~g 372 (551)
.+..|+++.|++.|.+.+. +-| ....||.-.++|.-+|+.++|++-++++++. ... .|..-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4455666666666655542 222 4555666666666666666666655554443 111 2222335567778
Q ss_pred cHHHHHHHHHHHHhhcCC
Q 048830 373 NVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~ 390 (551)
+.+.|..-|+.+-+++..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888877777644
No 257
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.56 E-value=5.3 Score=39.46 Aligned_cols=409 Identities=11% Similarity=0.056 Sum_probs=224.6
Q ss_pred hhhhhHhhhhccC---CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCC---hhhHHHHHHHHHcCCChhHHHHHHH
Q 048830 4 KKHARYVGLNKAR---QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQ---TQAWNSLIRAFAQSLSPLQAIFYYN 77 (551)
Q Consensus 4 ~~~~~~~~~~~g~---~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~ 77 (551)
.+|+..+.++-.+ +.|+.+|-+||.-|... |..++-++++++|..|- ..+|.--|++-....+++....+|.
T Consensus 23 ~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq--~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~ 100 (660)
T COG5107 23 NIHGDELRLRERIKDNPTNILSYFQLIQYLETQ--ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFG 100 (660)
T ss_pred CCCchHHHHHHHhhcCchhHHHHHHHHHHHhhh--hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHH
Confidence 4566665555554 35778999999999999 99999999999998764 4578888888888889999999999
Q ss_pred HHHHcCCCCCChhhHHHHHHHHhccCChHH------HHHHHHHHHH-hCCCCCh-hHHHHHHHHHH---hCC------CH
Q 048830 78 HMLMASLSRPDTFTFTFTLKACERVKALNK------CQELHGFVIR-SGYERCV-VVSTNLMRGYA---ANG------VI 140 (551)
Q Consensus 78 ~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~------a~~~~~~~~~-~g~~~~~-~~~~~li~~y~---~~g------~~ 140 (551)
+.+... .+...|..-+.-.-+.+..-. .-+.|+..+. .++.|-. ..|+..+...- ..| ++
T Consensus 101 rCL~k~---l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqri 177 (660)
T COG5107 101 RCLKKS---LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRI 177 (660)
T ss_pred HHHhhh---ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHH
Confidence 988765 345555555554434332211 1233333333 3444433 34454444321 223 35
Q ss_pred HHHHHHhccCCC-C---------ChhHHHHHHHHHHh-------cCChHHHHHHHHHhhh--CCcc----cCHHHHHHHH
Q 048830 141 EAARSVFDNMPE-R---------DLVSWNSIISCYTQ-------ASFHLEALKLYERMRF--EDVG----LDGFTLVCLL 197 (551)
Q Consensus 141 ~~A~~~~~~m~~-~---------~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~--~~~~----p~~~t~~~ll 197 (551)
|..++.+.++.. | |-..|..=+.-... .--+-.|.+.+++... .|+. .+..|++.+-
T Consensus 178 d~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~ 257 (660)
T COG5107 178 DKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAA 257 (660)
T ss_pred HHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccc
Confidence 556666766654 1 22222211111110 1123445555555532 2332 1222333211
Q ss_pred H-----------HHHhc-----CC--hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHH
Q 048830 198 S-----------SCAHV-----GA--LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259 (551)
Q Consensus 198 ~-----------~~~~~-----~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 259 (551)
+ .=... ++ .+...-+|+++... +.....+|----.-+...++-+.|......-.+-.+..-
T Consensus 258 r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~ 336 (660)
T COG5107 258 RTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLT 336 (660)
T ss_pred ccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchh
Confidence 1 00000 00 00111122222221 111222332222333455667777776665432111100
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH-----------------------------HcCCCCCHhhHHHHHHHHhccCCHHHH
Q 048830 260 NSMIVGYGVHGRGDEAISFFKQML-----------------------------MAGFHPDSITFLGLLCGCSHQGLVEEG 310 (551)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~-----------------------------~~g~~p~~~t~~~ll~~~~~~g~~~~a 310 (551)
--+-..|.-..+-++....|++.. -....--...|..++++-.+..-++.|
T Consensus 337 ~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aa 416 (660)
T COG5107 337 MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAA 416 (660)
T ss_pred eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHH
Confidence 001111111222222222222111 000111223466677777777789999
Q ss_pred HHHHHHhHHhcC-CCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 311 VEYFHMMVSRYN-LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 311 ~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
..+|-++.+. + ..+++.++++++.-++ .|+...|..+|+-+|.. +...-+-.+..+..-++-+.|..+|+..++
T Consensus 417 R~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 417 RKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 9999999765 6 5678999999998665 68888999999987776 444455667777888899999999997765
Q ss_pred hcCC--CcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 387 LEAA--SAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 387 ~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.-.. -...|..++.--+.-|+...+..+-++|..
T Consensus 495 r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 495 RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4322 245677777777777877777666666543
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=0.35 Score=45.38 Aligned_cols=157 Identities=10% Similarity=-0.023 Sum_probs=115.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhh----hhHHHhhcCCH
Q 048830 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC----LVDLYGRAGKL 343 (551)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~ 343 (551)
-.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...|+...|.- +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478889999999998875 466778888888899999999999999998865 34566655543 34455689999
Q ss_pred HHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC----CcchHHHHHHHhhhcCChhHHHHHHH
Q 048830 344 EKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA----SAGDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 344 ~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
++|++.-+++++. |.-.-.++...+-..|+..++.++.++--..=.. -.-.|-..+-.|...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999998887 6666667777888899999998887765432111 12345566777888899999999997
Q ss_pred HHHhCCCccCC
Q 048830 417 LIKSNGIKTTP 427 (551)
Q Consensus 417 ~m~~~g~~~~~ 427 (551)
.=.-....++.
T Consensus 272 ~ei~k~l~k~D 282 (491)
T KOG2610|consen 272 REIWKRLEKDD 282 (491)
T ss_pred HHHHHHhhccc
Confidence 54333344433
No 259
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.27 E-value=0.36 Score=44.21 Aligned_cols=100 Identities=9% Similarity=0.012 Sum_probs=61.8
Q ss_pred HHHHHHHhcCC--CCChhhHHHHHHHHHcC-----CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC--------
Q 048830 39 SYAQLLFNQIQ--NPQTQAWNSLIRAFAQS-----LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK-------- 103 (551)
Q Consensus 39 ~~A~~lf~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~-------- 103 (551)
-..+..|...+ ++|-.+|-+++..+... +..+-.-..++.|.+.|+. .|..+|+.|++.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVe-rDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVE-RDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcch-hhHHHHHHHHHhCcccccccHHHHH
Confidence 33456666666 57777888877776544 3445555566777788887 78888888887664432
Q ss_pred --------ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 104 --------ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 104 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
+-+-+..++++|...|+-||-.+-..|++++.+.+.
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 122345555666666666666555555555555443
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.25 E-value=0.27 Score=45.09 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=73.5
Q ss_pred chhhhhHHHhhcCCHHHHHHHHhhcC---CC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHHH
Q 048830 329 HYGCLVDLYGRAGKLEKALEVINTSS---PS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLLA 399 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 399 (551)
.|+.-++. .+.|++.+|.+-|..-+ |. .+..+-=|..++...|+++.|...|..+.+..|.+ |.++.-|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655554 46788999998887633 33 33344448899999999999999999999987664 67899999
Q ss_pred HHhhhcCChhHHHHHHHHHHhC
Q 048830 400 TIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
.+..+.|+.++|..++++..++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 261
>PRK15331 chaperone protein SicA; Provisional
Probab=94.13 E-value=0.44 Score=40.35 Aligned_cols=86 Identities=10% Similarity=-0.023 Sum_probs=43.0
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 048830 62 AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141 (551)
Q Consensus 62 ~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 141 (551)
.+-+.|++++|..+|+-+...++ -|..-+..|..++-..+++++|...|......+ ..|+...-....+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 34455666666666665555443 233334444444445555666666555554433 223333333445555555555
Q ss_pred HHHHHhccC
Q 048830 142 AARSVFDNM 150 (551)
Q Consensus 142 ~A~~~~~~m 150 (551)
.|+..|+..
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 555555443
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=1.3 Score=41.73 Aligned_cols=152 Identities=11% Similarity=0.045 Sum_probs=106.0
Q ss_pred HhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH----HHHHHHHhccCCHH
Q 048830 236 AKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF----LGLLCGCSHQGLVE 308 (551)
Q Consensus 236 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~~~~~~g~~~ 308 (551)
.-.|+.-+|-..++++.+ .|..+|+--=.+|...|+.+.-...+++.... ..||...| ..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345777888878888775 47888888888999999999999999988764 24444322 23334556789999
Q ss_pred HHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---------CHHHHHHHHHHHHhcCcHHHHH
Q 048830 309 EGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---------DPVLWRTLLGSCKIHRNVEIGE 378 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~ll~~~~~~g~~~~a~ 378 (551)
+|++.-++.. .+.| |.-.-.++...+--.|+..++.++..+ -+. ....|.. .-.+...+.++.|+
T Consensus 193 dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~-ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~al 267 (491)
T KOG2610|consen 193 DAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYK-TEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKAL 267 (491)
T ss_pred hHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHh-cccchhhhhHHHhhhhHHH-HHhhhcccchhHHH
Confidence 9999888775 4445 444455677777889999999999877 443 1112222 22345568999999
Q ss_pred HHHHHHHh--hcCCCcc
Q 048830 379 IAMKNLVQ--LEAASAG 393 (551)
Q Consensus 379 ~~~~~~~~--~~p~~~~ 393 (551)
++|++-+- ++.++..
T Consensus 268 eIyD~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 268 EIYDREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHHHHhhccchh
Confidence 99987653 4566653
No 263
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=4.5 Score=36.61 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=39.7
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCC-------CH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhh----cCCCcchHHH
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPS-------DP---VLWRTLLGSCKIHRNVEIGEIAMKNLVQL----EAASAGDYVL 397 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~ 397 (551)
.....|.+..++++|-..|.+ -.. -. ..+-+.+-.+.-..|+..|+..++.-.+. .|++..+...
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lK-e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLK-EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHH-hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334455555666666555544 111 01 11233333444445666666666665443 2445555556
Q ss_pred HHHHhhhcCChhHHHHH
Q 048830 398 LATIYACTKDEEGVART 414 (551)
Q Consensus 398 l~~~~~~~g~~~~a~~~ 414 (551)
|+.+|- .|+.+++.++
T Consensus 234 LL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 234 LLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHhc-cCCHHHHHHH
Confidence 665553 4555555444
No 264
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.93 E-value=3.2 Score=37.50 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=36.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCC--hhHHHHHHHHHHhcC
Q 048830 92 FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD--LVSWNSIISCYTQAS 169 (551)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~li~~~~~~g 169 (551)
|.....+|-...++++|...+.+..+- .+.+...|.+ ...++.|.-+.++|..-+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333444555556666666655444431 2333322221 122334444444443321 223445555566666
Q ss_pred ChHHHHHHHHH
Q 048830 170 FHLEALKLYER 180 (551)
Q Consensus 170 ~~~~A~~~~~~ 180 (551)
.++.|-..+++
T Consensus 106 spdtAAmaleK 116 (308)
T KOG1585|consen 106 SPDTAAMALEK 116 (308)
T ss_pred CcchHHHHHHH
Confidence 66555554444
No 265
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.93 E-value=3.2 Score=34.52 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=26.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 048830 92 FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137 (551)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 137 (551)
...++..+...+.......+++.+.+.+ ..++...+.++..|++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3445555555556666666666666554 34555666666666654
No 266
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.91 E-value=19 Score=43.39 Aligned_cols=309 Identities=15% Similarity=0.025 Sum_probs=161.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCCHHHHHHHhcc-CCCCChhHHHHHHHHHHhcCCh
Q 048830 95 TLKACERVKALNKCQELHGFVIRSGY--ERCVVVSTNLMRGYAANGVIEAARSVFDN-MPERDLVSWNSIISCYTQASFH 171 (551)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~ 171 (551)
+..+--+.+.+.+|...++.-..... ......+-.+...|+.-++.|...-+... ...++. ...|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccH
Confidence 33445566677777777666210000 11222344455578888887776666552 333332 2344456677888
Q ss_pred HHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCCHHHHHHHHHh
Q 048830 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL-VDMYAKCGNLDSAFCVFSR 250 (551)
Q Consensus 172 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~~~~~ 250 (551)
..|...|+.+.+.+ ++...+++-++......+.++...-..+-.... ..+....++++ +.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 88888888887653 233567777776666666666555533333322 22233333333 444567777777776665
Q ss_pred cCCCCHhHHHHH-H-HHHHhc--CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH----------
Q 048830 251 MRKRDVLSWNSM-I-VGYGVH--GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM---------- 316 (551)
Q Consensus 251 ~~~~~~~~~~~l-i-~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~---------- 316 (551)
..+..+|.+. + ..+.+. .+.-.-.+..+.+.+.-+.| +.+|+..|.+..+.++.-.
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 5556666655 2 222221 12111223333333321111 1122222221111111111
Q ss_pred hHHhcCCCCCccc------hhhh---hHHHhhcCCHHHHH--HHHhhcCC-C----CHHHHHHHHHHHHhcCcHHHHHHH
Q 048830 317 MVSRYNLKPGIKH------YGCL---VDLYGRAGKLEKAL--EVINTSSP-S----DPVLWRTLLGSCKIHRNVEIGEIA 380 (551)
Q Consensus 317 ~~~~~~~~p~~~~------~~~l---i~~~~~~g~~~~A~--~~~~~~~~-~----~~~~~~~ll~~~~~~g~~~~a~~~ 380 (551)
.....+..++..+ |..- .+-+.+....--|. .++..-|. . -..+|-.....++..|.++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111123332111 1111 11122211111111 01111122 1 567888999999999999999998
Q ss_pred HHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 381 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
.-++.+.. -|..+...+......|+...|..++++..+.
T Consensus 1693 ll~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1693 LLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 88887766 4678899999999999999999999877643
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.69 E-value=5.5 Score=36.45 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=99.6
Q ss_pred HHhcCCHHHHHHHHHhcCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCH--hhHHHHHHHHhcc-
Q 048830 235 YAKCGNLDSAFCVFSRMRKRD------VLSWNSMIVGYGVHGRGDEAISFFKQMLMA-GFHPDS--ITFLGLLCGCSHQ- 304 (551)
Q Consensus 235 y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t~~~ll~~~~~~- 304 (551)
-.+.|++++|.+.|+.+.... ..+--.++-++-+.+++++|+..+++.... +-.||. ..|...+..+...
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 346688888888888876431 233444566777888888888888887764 223333 2333333322221
Q ss_pred ---CCH---HHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHH--HHHHHHHHHhcCcHHH
Q 048830 305 ---GLV---EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL--WRTLLGSCKIHRNVEI 376 (551)
Q Consensus 305 ---g~~---~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~ 376 (551)
.+. ..|..-|+.++.++ |+. .-..+|...+.. +. |... =......|.+.|.+..
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~-~~-d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVK-LN-DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHH-HH-HHHHHHHHHHHHHHHHhcChHH
Confidence 222 33444444444432 221 111122221111 10 1111 1244577899999999
Q ss_pred HHHHHHHHHhhcCCCc---chHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 377 GEIAMKNLVQLEAASA---GDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 377 a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
|..-++.+++.-|+.+ ..+..+..+|...|..++|.+.-+-+..
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999999999866643 4566788899999999999988776654
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.55 E-value=1.2 Score=36.78 Aligned_cols=116 Identities=15% Similarity=0.062 Sum_probs=67.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAGF--HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 339 (551)
-.....+.|++++|.+.|+.+...-. +-....-..|+.++.+.+++++|...+++.++.+.-.|+ ..|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 34445677888888888888776411 122345566777888888888888888888765444443 234444444433
Q ss_pred cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 340 ~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
-...+.. +.. +...=+-.+....|...|+++++.-|+++
T Consensus 95 ~~~~~~~---~~~-----------~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDEGS---LQS-----------FFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhhhH---Hhh-----------hcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 2222211 111 11111122345678888888888888864
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.41 E-value=4 Score=33.94 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=18.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 303 (551)
++..+...+.......+++.+...+ ..+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3444444444445555555444443 2333344444444443
No 270
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.21 E-value=13 Score=39.42 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhh
Q 048830 159 NSIISCYTQASFHLEALKLYERMRF 183 (551)
Q Consensus 159 ~~li~~~~~~g~~~~A~~~~~~m~~ 183 (551)
..|+.-|...+++..|+.++-..++
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccC
Confidence 3477788888888888888866653
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.05 E-value=0.48 Score=44.17 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
..++..++..+...|+.+.+...+++++..+|-+...|..+..+|...|+...|+..++.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 346667788888889999999999999999999999999999999999999999999887764
No 272
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.98 E-value=7.2 Score=35.72 Aligned_cols=136 Identities=17% Similarity=0.141 Sum_probs=89.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHh
Q 048830 261 SMIVGYGVHGRGDEAISFFKQMLMAG--FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338 (551)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 338 (551)
.-+..-.+.|++++|...|+.+...- -+-...+...++.++-+.++++.|....++..+.++-.||+. |...+.++.
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs 117 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS 117 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH
Confidence 33455668899999999999998642 122346677778888899999999999999988877777752 334444443
Q ss_pred hcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc-----------------chHHHH
Q 048830 339 RAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA-----------------GDYVLL 398 (551)
Q Consensus 339 ~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~~l 398 (551)
.|.. ++. |.. -...|...++.+++.-|++. .-=..+
T Consensus 118 ----------~~~~-i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~I 173 (254)
T COG4105 118 ----------YFFQ-IDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAI 173 (254)
T ss_pred ----------Hhcc-CCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 1222 221 211 12234444444444455532 223467
Q ss_pred HHHhhhcCChhHHHHHHHHHHhC
Q 048830 399 ATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
++.|.+.|.|..|..-++.|.+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc
Confidence 88899999999999999999875
No 273
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.34 E-value=5.2 Score=32.49 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 048830 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222 (551)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 222 (551)
..+.-+..+.+.|+-+.-.+++.++.+. -.|++.....+..||.+.|+..++.+++.++-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3455566777788888888888777653 3677777778888888888888888888888777753
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.34 E-value=18 Score=38.79 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=38.4
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
-++..+....+.+.+..+.+. ... ++..|-.++..+...+..+.-.+...++++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~-~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCER-LGKEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHH-hCccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 345556667777777777777 555 888888888888888876666655555553
No 275
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.34 E-value=8.2 Score=35.46 Aligned_cols=182 Identities=13% Similarity=0.052 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHhcCC--C-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCCHhhHHHHHHHHhccCC
Q 048830 239 GNLDSAFCVFSRMRK--R-----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMA---GF--HPDSITFLGLLCGCSHQGL 306 (551)
Q Consensus 239 g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~g~ 306 (551)
.++++|..-|+++.+ + ...+.-.||..+.+.|++++.++.|++|.-- .+ .-...+.++++...+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456666666666542 1 2234445677777777777777777776531 11 1233456666666665655
Q ss_pred HHHHHHHHHHhHHhc----CCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC----------------CHHHHHHHHH
Q 048830 307 VEEGVEYFHMMVSRY----NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS----------------DPVLWRTLLG 366 (551)
Q Consensus 307 ~~~a~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~~ll~ 366 (551)
.+.-..+++.-++.. +-..--.+-+.|...|...|.+.+..+++.+ +.. -..+|..=+.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkq-Lh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQ-LHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHH-HHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555555555433321 1122234556677888877777777777765 321 2345666667
Q ss_pred HHHhcCcHHHHHHHHHHHHhhcCC--CcchH----HHHHHHhhhcCChhHHHHH-HHHHHhC
Q 048830 367 SCKIHRNVEIGEIAMKNLVQLEAA--SAGDY----VLLATIYACTKDEEGVART-RKLIKSN 421 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~----~~l~~~~~~~g~~~~a~~~-~~~m~~~ 421 (551)
.|....+-..-..+|++++..... .|... .+=+.++.+.|+|++|..- |+..+..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 788888888888889988876522 22222 1334567788889988764 4444433
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.25 E-value=0.34 Score=28.74 Aligned_cols=32 Identities=9% Similarity=-0.019 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
.+|..+...+...|++++|...|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677778888888888888888888888874
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.99 E-value=16 Score=40.87 Aligned_cols=137 Identities=13% Similarity=0.064 Sum_probs=78.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHH
Q 048830 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310 (551)
Q Consensus 231 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 310 (551)
.++.--+.|.+.+|..++..=.+.--..|.+...-+.+...+++|.-.|+..-+. --.+.+|...|++.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHH
Confidence 3333445555666655554322222344555555566677778877777654321 1346778888999999
Q ss_pred HHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---------CHHHHHHHHHHHHhcCcHHHHH
Q 048830 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---------DPVLWRTLLGSCKIHRNVEIGE 378 (551)
Q Consensus 311 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~ll~~~~~~g~~~~a~ 378 (551)
..+..++.. +-.--..+-..|+.-+..+++.-+|-++..+.... +...|.-.+..+...++-+.-+
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~ie 1059 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKRDDIIE 1059 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcccchHHH
Confidence 988877632 11111223356777888888888888887774443 3344444444444444333333
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.86 E-value=0.38 Score=29.16 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 361 WRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 361 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
|..|...|...|++++|+.++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666666666666443
No 279
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.85 E-value=19 Score=38.57 Aligned_cols=86 Identities=9% Similarity=-0.030 Sum_probs=42.7
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh---c
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG-FVESVYVGNALVDMYAK---C 238 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~---~ 238 (551)
..+.-.|+++.|++++-. ..+...|.+++...+.-+.-..-.+... ..+.... -.|...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 345568999999999876 3445677888877776654333222211 2222211 11122456778888876 4
Q ss_pred CCHHHHHHHHHhcCC
Q 048830 239 GNLDSAFCVFSRMRK 253 (551)
Q Consensus 239 g~~~~A~~~~~~~~~ 253 (551)
.+..+|.++|--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 577888888776653
No 280
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.83 E-value=12 Score=35.51 Aligned_cols=27 Identities=15% Similarity=-0.039 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
.++-.-+..+.+.++.+.+.+.+.+|.
T Consensus 122 ~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 122 EVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 333333444444556666666665554
No 281
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.66 E-value=5.6 Score=37.94 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCC--HHHHHHHHHHhHHhcCCCCCccchhhhhHH
Q 048830 273 DEAISFFKQMLMAGFHPDS--ITFLGLLCGCSHQGL--VEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336 (551)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 336 (551)
+.+..+|+.+...|+..+. .....++..+..... +.++..+++.+.+. ++++...+|..+.-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 4556677777776665543 223333332222222 34677777777554 777777776655433
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.25 E-value=0.33 Score=29.43 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=22.3
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 394 DYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999854
No 283
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.95 E-value=2.7 Score=40.05 Aligned_cols=126 Identities=10% Similarity=0.061 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--CC----CHHHHHHHhccCCC-------CChhHHHHHHHHHHhcCC--
Q 048830 106 NKCQELHGFVIRSGYERCVVVSTNLMRGYAA--NG----VIEAARSVFDNMPE-------RDLVSWNSIISCYTQASF-- 170 (551)
Q Consensus 106 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g----~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~-- 170 (551)
++...+++.+.+.|+..+..+|-+..-.... .. ....|..+|+.|.+ ++-.++..|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3344555666666665555544442222222 11 23455566666653 233344444433 2222
Q ss_pred --hHHHHHHHHHhhhCCcccCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048830 171 --HLEALKLYERMRFEDVGLDGF--TLVCLLSSCAHVGA--LNMGIFLHRIACEMGFVESVYVGNALVD 233 (551)
Q Consensus 171 --~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~ 233 (551)
.+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+..+++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 244566677777666654322 33333333322222 3466677777778887777666665543
No 284
>PRK09687 putative lyase; Provisional
Probab=90.44 E-value=16 Score=34.59 Aligned_cols=241 Identities=7% Similarity=-0.054 Sum_probs=147.2
Q ss_pred HHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCCh----HHHHHHHHHHHHh
Q 048830 43 LLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKAL----NKCQELHGFVIRS 118 (551)
Q Consensus 43 ~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~ 118 (551)
.+++.+..+|....-..+..+...|. .++...+..+... +|...-...+.++...|+. +++...+..+...
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~ 101 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE 101 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc
Confidence 44455567788787778888877775 4555555555543 5555555667777777763 4566666655332
Q ss_pred CCCCChhHHHHHHHHHHhCCCH-----HHHHHHhcc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHH
Q 048830 119 GYERCVVVSTNLMRGYAANGVI-----EAARSVFDN-MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192 (551)
Q Consensus 119 g~~~~~~~~~~li~~y~~~g~~-----~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 192 (551)
.++..+....+.++...+.- ..+...+.. +..++..+--..+.++.+.++ .+++..+-.+.+ .+|...
T Consensus 102 --D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~V 175 (280)
T PRK09687 102 --DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDV 175 (280)
T ss_pred --CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHH
Confidence 56777777777777665421 233444433 334566666677777777776 567777777765 355555
Q ss_pred HHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC
Q 048830 193 LVCLLSSCAHVG-ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271 (551)
Q Consensus 193 ~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (551)
-...+.++...+ ....+...+..+.. .++..+-...+.++++.|+......+.+.+..+++ .-..+.++...|.
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~ 250 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGD 250 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCC
Confidence 555566666543 13345555544443 45777777788888888885544444455444442 3456677777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
. +|+..+..+... .||...-...+.+|.
T Consensus 251 ~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 K-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred H-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 5 677777777763 346655555555443
No 285
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.44 E-value=9.3 Score=33.43 Aligned_cols=112 Identities=9% Similarity=0.041 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCCCCHhhHH--HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhh-----hhHHHhhcCCHHHH
Q 048830 274 EAISFFKQMLMAGFHPDSITFL--GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-----LVDLYGRAGKLEKA 346 (551)
Q Consensus 274 ~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 346 (551)
+.....+++....-.....++. .+...+...+++++|...++..... |.-..+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444555555432122222222 3345677788888888888776532 32223333 44566778999999
Q ss_pred HHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 347 LEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 347 ~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
+..++. ... ....-..-...+...|+.++|...|++.++.++.
T Consensus 146 L~~L~t-~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDT-IKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhc-cccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 998888 443 2333333447788899999999999999888744
No 286
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.22 E-value=0.93 Score=28.90 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=18.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 048830 55 AWNSLIRAFAQSLSPLQAIFYYNHMLMAS 83 (551)
Q Consensus 55 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 83 (551)
+|..+...|.+.|++++|.++|++.++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666655
No 287
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=16 Score=34.22 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=74.7
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----HhHHHHHHHHHHhcCChHH
Q 048830 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD----VLSWNSMIVGYGVHGRGDE 274 (551)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 274 (551)
.....++..++..++..+...... +...--.|..+|...|+.+.|..++..++... .....+-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345677888888888877775422 35566678888889999999999998887421 1111122333333333333
Q ss_pred HHHHHHHHHHcCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcC
Q 048830 275 AISFFKQMLMAGFHP-DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341 (551)
Q Consensus 275 A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 341 (551)
...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.++..-.-|...-..|++.+.-.|
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333322 34 3344445555566666666666555544443222223333344444443333
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.95 E-value=24 Score=35.75 Aligned_cols=142 Identities=16% Similarity=0.128 Sum_probs=64.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH--H
Q 048830 58 SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGY--A 135 (551)
Q Consensus 58 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y--~ 135 (551)
.+|.-.-+..+++.-+++-.+.++.. ||-.+.-.++ +--....+.++++++.+.++.|-. .+-... .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~---pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-------~lg~s~~~~ 241 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN---PDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-------SLGKSQFLQ 241 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh---hhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-------hhchhhhhh
Confidence 34444455666666666666666544 4443322222 222344577778887777765410 000000 0
Q ss_pred hCCCHHHHHHHhccCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcc-cCHHHHHHHHHHHHhcCChHHHH
Q 048830 136 ANGVIEAARSVFDNMPERD----LVSWNSIISCYTQASFHLEALKLYERMRFEDVG-LDGFTLVCLLSSCAHVGALNMGI 210 (551)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~ 210 (551)
..|.. ++....++ ..+-..+..+.-+.|+.++|++.|++|.+.... -.......++.++...+...++.
T Consensus 242 ~~g~~------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 242 HHGHF------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred cccch------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 01111 11111122 122233455555667777777777776543211 11223344555555555555555
Q ss_pred HHHHHH
Q 048830 211 FLHRIA 216 (551)
Q Consensus 211 ~~~~~~ 216 (551)
.++.+-
T Consensus 316 ~lL~kY 321 (539)
T PF04184_consen 316 ALLAKY 321 (539)
T ss_pred HHHHHh
Confidence 555443
No 289
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.94 E-value=17 Score=34.09 Aligned_cols=51 Identities=24% Similarity=0.059 Sum_probs=24.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHh
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 317 (551)
....|+..+|..+|+...... +-+...-..+..+|...|+++.|..++..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 444555555555555555431 111233334445555555555555555544
No 290
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.94 E-value=1.3 Score=41.75 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=56.1
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHH
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVE 375 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~ 375 (551)
-|.++|.+++|+..|.... ...| +..++..-..+|.+..++..|+.-.+.++.. -...|.--+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3555666666666665543 3344 5555555566666666666555544443333 2334555555556677888
Q ss_pred HHHHHHHHHHhhcCCCcc
Q 048830 376 IGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 376 ~a~~~~~~~~~~~p~~~~ 393 (551)
+|.+-++.+++++|++..
T Consensus 183 EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHhHHHHHhhCcccHH
Confidence 899999999999998643
No 291
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.51 E-value=1.8 Score=37.24 Aligned_cols=47 Identities=9% Similarity=0.013 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC-----------hhHHHHHHHHHHh
Q 048830 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD-----------EEGVARTRKLIKS 420 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~ 420 (551)
+++|..-|++++.++|+...++..++++|...+. +++|...|++..+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 3457888888899999999999999999988865 4555555555544
No 292
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.14 E-value=27 Score=35.35 Aligned_cols=94 Identities=18% Similarity=0.132 Sum_probs=64.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048830 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233 (551)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 233 (551)
|....-+++..+..+-.+.-+..+..+|..-| -+...|..++.+|... ..++-..+++.+++..+. |+....-|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44555667777878777888888888887754 4667777888888777 566677778877776543 4444455555
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 048830 234 MYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~ 252 (551)
.|-+ ++.+.+...|.++.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHH-hchhhHHHHHHHHH
Confidence 5555 77777777777654
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.71 E-value=4.1 Score=34.78 Aligned_cols=138 Identities=7% Similarity=-0.033 Sum_probs=88.5
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh-HHHH
Q 048830 51 PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV-VSTN 129 (551)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ 129 (551)
.....|..-+. +++.+..++|+.-|..+...|...--......+....+..|+...|...|+++-+....|-+. -..-
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 44555665555 467788899999999998877530111111222334567789999999999887654344332 1111
Q ss_pred --HHHHHHhCCCHHHHHHHhccCCCC-C---hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccC
Q 048830 130 --LMRGYAANGVIEAARSVFDNMPER-D---LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189 (551)
Q Consensus 130 --li~~y~~~g~~~~A~~~~~~m~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 189 (551)
-...+...|.++......+.+..+ + ...-.+|.-+-.+.|++.+|.+.|..+......|.
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 122356788899888888777542 2 23455677777889999999999998876444443
No 294
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.68 E-value=0.88 Score=42.94 Aligned_cols=86 Identities=13% Similarity=0.124 Sum_probs=70.9
Q ss_pred hHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhH
Q 048830 334 VDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410 (551)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 410 (551)
.+-|.++|.+++|++-|.++|.. |++++..-..+|.+...+..|+.-...++.++..-..+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 45688999999999999997866 899999999999999999999999999998886666677777777777777777
Q ss_pred HHHHHHHHH
Q 048830 411 VARTRKLIK 419 (551)
Q Consensus 411 a~~~~~~m~ 419 (551)
|.+-.+...
T Consensus 184 AKkD~E~vL 192 (536)
T KOG4648|consen 184 AKKDCETVL 192 (536)
T ss_pred HHHhHHHHH
Confidence 766555443
No 295
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.52 E-value=7.1 Score=29.91 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048830 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285 (551)
Q Consensus 206 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (551)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666665554321 22222233456778899999999999999999999988765 3677778888888888777
Q ss_pred CCCCCHhhHH
Q 048830 286 GFHPDSITFL 295 (551)
Q Consensus 286 g~~p~~~t~~ 295 (551)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 56555554
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.45 E-value=2.4 Score=39.73 Aligned_cols=45 Identities=18% Similarity=-0.011 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhcc
Q 048830 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149 (551)
Q Consensus 105 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 149 (551)
.+++..++..-+..|+-||.++++.+++.+.+.+++.+|.++.-.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 334444444444444445555555555555555554444444433
No 297
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.38 E-value=22 Score=34.87 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcC----CCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA----ASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
...+|..+...+++.|+++.|...+.++...++ ..|.....-+......|+.++|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677899999999999999999999999988652 2467778889999999999999998887765
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.31 E-value=2.3 Score=35.93 Aligned_cols=64 Identities=9% Similarity=-0.011 Sum_probs=49.1
Q ss_pred HHHHHHHH---HHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 359 VLWRTLLG---SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 359 ~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
.+.+.|+. .-...++.+.++.++.-+.-+.|..+..-..-+..+...|+|.+|..+++.+.+..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 34444443 33456788888888888888888888888888888888888888888888876654
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.08 E-value=7 Score=34.10 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHhccCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHh
Q 048830 127 STNLMRGYAANGVIEAARSVFDNMPERD------LVSWNSIISCYTQASFHLEALKLYERM 181 (551)
Q Consensus 127 ~~~li~~y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (551)
+..+.+.|.+.|+.+.|.+.|.++.+.. ...+-.+|......+++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4445555555555555555555544321 112333444444444444444444333
No 300
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.65 E-value=11 Score=38.81 Aligned_cols=133 Identities=17% Similarity=0.041 Sum_probs=89.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCC
Q 048830 91 TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170 (551)
Q Consensus 91 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 170 (551)
.-+.+...+.++|-.++|+++ .+|+.- -.....+.|+++.|.++..+. .+..-|..|..+..+.|+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhccc
Confidence 344555566666666666554 333322 233456788999988876554 356779999999999999
Q ss_pred hHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048830 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250 (551)
Q Consensus 171 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 250 (551)
+..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |.-..+|...|+++++.+++.+
T Consensus 682 l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 682 LPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 9999999877654 456666777777777666666666665522 3334456777888888888766
Q ss_pred cC
Q 048830 251 MR 252 (551)
Q Consensus 251 ~~ 252 (551)
-.
T Consensus 747 t~ 748 (794)
T KOG0276|consen 747 TQ 748 (794)
T ss_pred cC
Confidence 43
No 301
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.63 E-value=5.4 Score=37.39 Aligned_cols=76 Identities=8% Similarity=-0.075 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH-----hCCCCChhHHHHH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR-----SGYERCVVVSTNL 130 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~~l 130 (551)
+..++..+...|+++.+.+.++++....+ -|...|..++.+|.+.|+...|+..|..+.+ .|+.|...+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34455666666777777777777766655 4666677777777777777777776666654 4566665555444
Q ss_pred HHH
Q 048830 131 MRG 133 (551)
Q Consensus 131 i~~ 133 (551)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
No 302
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.52 E-value=7.5 Score=33.24 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=8.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhc
Q 048830 231 LVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 231 li~~y~~~g~~~~A~~~~~~~ 251 (551)
|.-+-.+.|++.+|.+.|..+
T Consensus 173 LglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HhHHHHhccchHHHHHHHHHH
Confidence 333334444444444444443
No 303
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.37 E-value=6.3 Score=34.53 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=39.7
Q ss_pred HHHhhcCCHHHHHHHHhhcCCCCHHHHHHHH---HHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLL---GSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
-++.+.+.++.|++--.+++..++..-.+|. .+|-+...++.|+.-|+++++.+|....+-
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 3455566666666655555555444334443 467777889999999999999998765433
No 304
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.12 E-value=0.37 Score=45.48 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=72.0
Q ss_pred hcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHH
Q 048830 339 RAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415 (551)
Q Consensus 339 ~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 415 (551)
..|.+++|++.|..+++. ....|..-.+++.+.+....|++-+..+++++|+....|-.-+.+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 457788888888877776 55566666677888888888999999999999998888888888888899999999999
Q ss_pred HHHHhCCCccC
Q 048830 416 KLIKSNGIKTT 426 (551)
Q Consensus 416 ~~m~~~g~~~~ 426 (551)
....+.++...
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 88888777654
No 305
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.00 E-value=27 Score=32.74 Aligned_cols=60 Identities=13% Similarity=-0.005 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+.+....+|...|.+.+|..+.++++.++|-+...+-.|.+.++..|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444455789999999999999999999999999999999999999999888888887774
No 306
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.75 E-value=29 Score=32.88 Aligned_cols=154 Identities=11% Similarity=0.045 Sum_probs=78.5
Q ss_pred CChHHHHHHHhcCCC------CCh------hhHHHHHHHHHcCCChhHHHHHHHHHHHc----C---CCCCCh-----hh
Q 048830 36 SSLSYAQLLFNQIQN------PQT------QAWNSLIRAFAQSLSPLQAIFYYNHMLMA----S---LSRPDT-----FT 91 (551)
Q Consensus 36 g~~~~A~~lf~~~~~------~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~---~~~pd~-----~~ 91 (551)
|+++.|..++.+... |+. ..||.-.+.+.+..+++.|...+++..+. + ...|+. .+
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i 86 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI 86 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Confidence 888888888876542 222 23555555554444777777766665432 1 111333 23
Q ss_pred HHHHHHHHhccCChH---HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCC---ChhHHHHHHHHH
Q 048830 92 FTFTLKACERVKALN---KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER---DLVSWNSIISCY 165 (551)
Q Consensus 92 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~ 165 (551)
+..++.++...+..+ +|..+++.+... ++..+.++-.-+..+.+.++.+++.+.+.+|... ....+..++..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 445556666555543 344455445332 2333444544556666667777777777666531 223444444443
Q ss_pred Hh--cCChHHHHHHHHHhhhCCcccCH
Q 048830 166 TQ--ASFHLEALKLYERMRFEDVGLDG 190 (551)
Q Consensus 166 ~~--~g~~~~A~~~~~~m~~~~~~p~~ 190 (551)
.. ......|...+..+....+.|..
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 11 12334555555555444444443
No 307
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.72 E-value=49 Score=35.49 Aligned_cols=194 Identities=10% Similarity=-0.008 Sum_probs=104.7
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHH-cCCChhHHHHHHHHHHHcCCCCCChh-----
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFA-QSLSPLQAIFYYNHMLMASLSRPDTF----- 90 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~~~~~pd~~----- 90 (551)
+.+..-|..||.+-.+| ++.+.+=+.--+..+..++-.+...+. ...+++.|...+++.....-. ++-.
T Consensus 27 ~~~l~~Y~kLI~~ai~C----L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~ 101 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIKC----LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFR 101 (608)
T ss_pred hhhHHHHHHHHHHHHHH----HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHH
Confidence 45666788888887777 333333111111224455566666665 667888999888877544322 2222
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhC----CCCChhHHHHH-HHHHHhCCCHHHHHHHhccCCC-----CC--hhHH
Q 048830 91 TFTFTLKACERVKALNKCQELHGFVIRSG----YERCVVVSTNL-MRGYAANGVIEAARSVFDNMPE-----RD--LVSW 158 (551)
Q Consensus 91 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~l-i~~y~~~g~~~~A~~~~~~m~~-----~~--~~~~ 158 (551)
.-..++..+.+.+... |....++.++.- ..+-...+.-+ +..+...++...|.+.++.+.. .| +..+
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 1223455555555544 888877766532 11222333333 3333344788888888876643 22 2233
Q ss_pred HHHHHHHH--hcCChHHHHHHHHHhhhCC---------cccCHHHHHHHHHHHH--hcCChHHHHHHHHHH
Q 048830 159 NSIISCYT--QASFHLEALKLYERMRFED---------VGLDGFTLVCLLSSCA--HVGALNMGIFLHRIA 216 (551)
Q Consensus 159 ~~li~~~~--~~g~~~~A~~~~~~m~~~~---------~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 216 (551)
-.++.+.. +.+.++++++..+++.... -.|-..++..++..++ ..|+++.+.....++
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333 4466677777777663221 1234556666666664 456665666554444
No 308
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.61 E-value=8.4 Score=36.28 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=72.0
Q ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-C--------ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCccc
Q 048830 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-R--------DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188 (551)
Q Consensus 118 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 188 (551)
.|.+....+...++..-....+++.++..+-++.. | ...+|-.++. .-++++++.++..=.+-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 45555666666777777777888888877766543 1 2333333333 337788888888888889999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 048830 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220 (551)
Q Consensus 189 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 220 (551)
|.+|+..+|..+.+.++...|.++...++...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998888887776653
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.59 E-value=2.9 Score=34.77 Aligned_cols=55 Identities=9% Similarity=-0.045 Sum_probs=48.9
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
..++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 3789999999999999999999999999999999999999999999998776543
No 310
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.39 E-value=1.4 Score=26.30 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=16.2
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHH
Q 048830 121 ERCVVVSTNLMRGYAANGVIEAAR 144 (551)
Q Consensus 121 ~~~~~~~~~li~~y~~~g~~~~A~ 144 (551)
+.++..|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445666777777777777777664
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.37 E-value=1.8 Score=25.49 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666655
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.27 E-value=1.9 Score=24.99 Aligned_cols=28 Identities=7% Similarity=-0.054 Sum_probs=17.5
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 363 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
.+..++...|+.++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555666666666666666666665
No 313
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.20 E-value=21 Score=30.69 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC--CHHHHHHHhccCC
Q 048830 74 FYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG--VIEAARSVFDNMP 151 (551)
Q Consensus 74 ~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~ 151 (551)
+.++.+.+.++. |+...+..+++.+.+.|.+..-.++ +..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 15 EYirSl~~~~i~-~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 15 EYIRSLNQHNIP-VQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 445555566776 7777888888888887776554433 44444455443333332222111 1334455555543
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218 (551)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (551)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...-..++....+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556677788888888888887765322 112223455565566665555555555444
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.79 E-value=8.4 Score=33.62 Aligned_cols=63 Identities=10% Similarity=-0.025 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHH
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT--FTFTFTLKACERVKALNKCQELHGFVIR 117 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (551)
..+..+...|.+.|+.+.|++.|.++...... |.. ..+..+++.+...+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35667777788888888888888887765443 332 2455666777777777777777666654
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.48 E-value=1.3 Score=25.96 Aligned_cols=28 Identities=11% Similarity=-0.001 Sum_probs=24.3
Q ss_pred chHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 393 GDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998865
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.45 E-value=1.2 Score=37.26 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q 048830 190 GFTLVCLLSSCAH 202 (551)
Q Consensus 190 ~~t~~~ll~~~~~ 202 (551)
...|..++..|..
T Consensus 125 ~~l~~~l~~~~l~ 137 (143)
T PF00637_consen 125 PELWEQLLKYCLD 137 (143)
T ss_dssp SHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
No 317
>PRK12798 chemotaxis protein; Reviewed
Probab=85.35 E-value=41 Score=33.35 Aligned_cols=179 Identities=15% Similarity=0.193 Sum_probs=116.9
Q ss_pred cCCHHHHHHHHHhcCC----CCHhHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHhccCCHH
Q 048830 238 CGNLDSAFCVFSRMRK----RDVLSWNSMIVG-YGVHGRGDEAISFFKQMLMAGFHPDS----ITFLGLLCGCSHQGLVE 308 (551)
Q Consensus 238 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~ 308 (551)
.|+.++|.+.+..+.. +....+-+|+.+ .....++.+|+++|+...-. .|-. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888888763 345567777665 44556789999999987653 3433 33444455667889999
Q ss_pred HHHHHHHHhHHhcCCCCCccchh-hhhHHHhh---cCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHH
Q 048830 309 EGVEYFHMMVSRYNLKPGIKHYG-CLVDLYGR---AGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMK 382 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~---~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~ 382 (551)
++..+-.....+|.-.|-...|. .++..+.+ ....+.-.+++.. |+. -..+|-.+...-...|+.+.|....+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 98888777777777667543332 33333333 3345555666777 666 66788888888999999999999999
Q ss_pred HHHhhcCCCcchHHHHHHHh-----hhcCChhHHHHHHHHHHh
Q 048830 383 NLVQLEAASAGDYVLLATIY-----ACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 383 ~~~~~~p~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~m~~ 420 (551)
++..+... ...-...+..| .-..+++++.+.+..+..
T Consensus 282 ~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 282 RALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 99998633 22222222222 223456666666655433
No 318
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.29 E-value=22 Score=30.17 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=8.0
Q ss_pred HHhCCCHHHHHHHhccCC
Q 048830 134 YAANGVIEAARSVFDNMP 151 (551)
Q Consensus 134 y~~~g~~~~A~~~~~~m~ 151 (551)
+.+.|++++|+++|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 344444444444444443
No 319
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.22 E-value=1.1 Score=24.79 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=17.4
Q ss_pred chHHHHHHHhhhcCChhHHHHHHH
Q 048830 393 GDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677778888888888877664
No 320
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.06 E-value=29 Score=31.40 Aligned_cols=27 Identities=0% Similarity=-0.257 Sum_probs=16.4
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
...+++.+|..+|+++.....+++-.-
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 445666667777766666666655443
No 321
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.51 E-value=16 Score=28.03 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 048830 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184 (551)
Q Consensus 105 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (551)
.++|.-+-+.+...+-. ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+..|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666665544311 22222333456788999999999999999999999987765 4677777777777777666
Q ss_pred CcccCHHHHHH
Q 048830 185 DVGLDGFTLVC 195 (551)
Q Consensus 185 ~~~p~~~t~~~ 195 (551)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 5 555555543
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.41 E-value=0.75 Score=38.54 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=61.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHH
Q 048830 94 FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173 (551)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 173 (551)
.+++.+.+.+.++....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677777888888888888888776666788889999999999888888888874433 223456666777777777
Q ss_pred HHHHHHHh
Q 048830 174 ALKLYERM 181 (551)
Q Consensus 174 A~~~~~~m 181 (551)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77776655
No 323
>PRK10941 hypothetical protein; Provisional
Probab=84.36 E-value=9.1 Score=35.88 Aligned_cols=61 Identities=18% Similarity=0.113 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
..+.|-.+|.+.++++.|..+.+.++.+.|++|.-+.--+-+|.+.|.+..|..=++...+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999999999998876654
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.94 E-value=25 Score=31.44 Aligned_cols=123 Identities=16% Similarity=0.108 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhh
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLV 334 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li 334 (551)
.+..++.+.+.+..++|+...++-++.. +.|..+-..++..++-.|++++|..-++... .+.|+ ...|..+|
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHHH
Confidence 3455667778888888888887777652 3445566677788888899998888777663 34443 34455444
Q ss_pred HHHhhcCCHHHHH-HHHhh-cCCC----CHHHHHHHHH-H--HHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 335 DLYGRAGKLEKAL-EVINT-SSPS----DPVLWRTLLG-S--CKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 335 ~~~~~~g~~~~A~-~~~~~-~~~~----~~~~~~~ll~-~--~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
.+ +.++ ++|.- ..|. ....|-..+. + |...|..+.+..+-++.++..|..+
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 43 2232 33432 1222 4556665553 3 3334456666667777777766643
No 325
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.67 E-value=3.3 Score=42.17 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=66.5
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC--CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHH
Q 048830 303 HQGLVEEGVEYFHMMVSRYNLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a 377 (551)
-.|+...|...+..+. ...| .-.....|.+.+.+.|...+|..++.+++.. .+.++.++.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3566777777766654 3444 2334455666777777777777777664544 667777777888888888888
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 378 EIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
++.+++++.+.|+++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888888888887776665544433
No 326
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.54 E-value=2.2 Score=23.91 Aligned_cols=30 Identities=7% Similarity=-0.049 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcC
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 389 (551)
.|..+...+...++++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555556666665555555544
No 327
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.18 E-value=3.5 Score=27.58 Aligned_cols=34 Identities=12% Similarity=-0.049 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 362 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
-.+.-++.+.|+++.|....+.+++.+|+|..+-
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3466788999999999999999999999986543
No 328
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.16 E-value=29 Score=29.82 Aligned_cols=134 Identities=13% Similarity=0.048 Sum_probs=73.9
Q ss_pred HHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 048830 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254 (551)
Q Consensus 175 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 254 (551)
+++.+.+.+.+++|+...+..+++.+.+.|....-.++ +..++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 34555666777888888888888888888876554443 344444444333333222221 222233333333322
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
=-..+..++..+...|++-+|+.+.+..... +...-..++.+-.+.++...=..+|+-..
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2234556677788888888888888765322 22222445666666666555444444443
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.92 E-value=17 Score=36.33 Aligned_cols=129 Identities=11% Similarity=0.024 Sum_probs=76.9
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHH
Q 048830 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGE 378 (551)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~ 378 (551)
..|++-.|-+-+...+..+.-.|+.... ........|+++.+...+.. ... ...+...++......|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~-~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISD-VEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhc-hhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3456555544444444443444443322 23334566778887777755 322 5666777777777888888888
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECC
Q 048830 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436 (551)
Q Consensus 379 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~ 436 (551)
...+.++..+-+++.....-+..--..|-++++.-.|++....+.+. ..-|+..-.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~--~~g~v~~~~ 433 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET--QSGWVNFLS 433 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh--cccceeeec
Confidence 88888887766666555444444455577788888888776543333 333554433
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.88 E-value=3.2 Score=25.59 Aligned_cols=27 Identities=7% Similarity=0.075 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444455555555555555554443
No 331
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.83 E-value=2.6 Score=37.29 Aligned_cols=90 Identities=13% Similarity=0.116 Sum_probs=55.7
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHH---HHHHHHHHHHhcCcHH
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV---LWRTLLGSCKIHRNVE 375 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~ 375 (551)
.|-..|....|+.=|.+.. .+.|+ +.+||-|.--+...|+++.|.+.|+..++.|+. +...-.-++.-.|+++
T Consensus 74 lYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 3555666666666666554 45664 456777777777777777777777775554222 2222222344467777
Q ss_pred HHHHHHHHHHhhcCCCc
Q 048830 376 IGEIAMKNLVQLEAASA 392 (551)
Q Consensus 376 ~a~~~~~~~~~~~p~~~ 392 (551)
.|.+-+.+.-+.+|+||
T Consensus 151 LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 151 LAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hhHHHHHHHHhcCCCCh
Confidence 77777777777777766
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.22 E-value=80 Score=34.27 Aligned_cols=142 Identities=10% Similarity=-0.028 Sum_probs=80.7
Q ss_pred HHHHHHcCCCCChHHHHHHHhcCCCCChhhHHH----HHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 048830 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNS----LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101 (551)
Q Consensus 26 li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~ 101 (551)
-+++..+. ..++-|..+-+.-.-+ ...-.. ..+-+-+.|++++|...|-+-.. . .++ +.++.-+..
T Consensus 340 kL~iL~kK--~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~--le~---s~Vi~kfLd 409 (933)
T KOG2114|consen 340 KLDILFKK--NLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--F--LEP---SEVIKKFLD 409 (933)
T ss_pred HHHHHHHh--hhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--c--CCh---HHHHHHhcC
Confidence 34455554 5666666665543322 222222 22345667888888887766542 2 111 235555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhH--HHHHHHHHHhcCChHHHHHHHH
Q 048830 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS--WNSIISCYTQASFHLEALKLYE 179 (551)
Q Consensus 102 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 179 (551)
......--.+++.+.+.|+. +...-+.|+++|.+.++.+.-.++.+.... .... ....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 56666666777777887754 334446788888888888887777776652 1111 2344455555555555554433
No 333
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.71 E-value=11 Score=28.78 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 048830 71 QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131 (551)
Q Consensus 71 ~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 131 (551)
++.+-++.+...... |++......++||-+.+++..|.++++-++... ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLV-PEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 455556666677777 888888888888888888888888888776332 22344555444
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.22 E-value=8.5 Score=29.66 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHH
Q 048830 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336 (551)
Q Consensus 274 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 336 (551)
+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+-+..+.+ +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 4556666666677889999999999999999999999999998876544 333367666653
No 335
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.00 E-value=4.1 Score=25.10 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455566666666666666666665543
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.96 E-value=14 Score=32.60 Aligned_cols=74 Identities=19% Similarity=0.105 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHHH
Q 048830 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM---GFVESVYVGNALVDMYAKCGNLDSAF 245 (551)
Q Consensus 171 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A~ 245 (551)
-+.|.+.|-++...+.- +.......+..|....+.+++.+++..+.+. +-.+|+.++.+|+..|.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 35677777777666543 3334444444444566777777777776663 22567777888888888888777764
No 337
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.85 E-value=9.8 Score=29.00 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
+.-++.+-++.+....+.|+.....+.++||.+.+++..|.++|+-...+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34466677777777788999999999999999999999999999988654332 3445665554
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.23 E-value=11 Score=33.37 Aligned_cols=74 Identities=15% Similarity=0.063 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCCccchhhhhHHHhhcCCHHHHH
Q 048830 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL--KPGIKHYGCLVDLYGRAGKLEKAL 347 (551)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~ 347 (551)
++|...|-.+...+.--++.....|...|. ..+.+++.+++....+-++- .+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666666554434444444444444 45667777776666654322 346666777777777777776664
No 339
>PRK09687 putative lyase; Provisional
Probab=80.14 E-value=55 Score=31.04 Aligned_cols=17 Identities=0% Similarity=0.004 Sum_probs=7.7
Q ss_pred CChhhHHHHHHHHhccC
Q 048830 87 PDTFTFTFTLKACERVK 103 (551)
Q Consensus 87 pd~~~~~~ll~~~~~~~ 103 (551)
+|.......+.++...|
T Consensus 35 ~d~~vR~~A~~aL~~~~ 51 (280)
T PRK09687 35 HNSLKRISSIRVLQLRG 51 (280)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 44444444444444444
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.94 E-value=27 Score=36.09 Aligned_cols=147 Identities=13% Similarity=0.005 Sum_probs=102.0
Q ss_pred CChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 048830 36 SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115 (551)
Q Consensus 36 g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~ 115 (551)
|+++.|-.++..+++ ..-+.+++.+..+|-.++|+++- +|..-- .....+.|+++.|.++..+.
T Consensus 600 rd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s----------~D~d~r---Felal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 600 RDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS----------TDPDQR---FELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred ccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC----------CChhhh---hhhhhhcCcHHHHHHHHHhh
Confidence 788888887777763 34466777788888888887652 333221 22345678999888875443
Q ss_pred HHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHH
Q 048830 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195 (551)
Q Consensus 116 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 195 (551)
.+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.|. . +.
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~ 726 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NL 726 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----ch
Confidence 356678999999999999999999998754 366777778888887766666665655552 2 23
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 048830 196 LLSSCAHVGALNMGIFLHRI 215 (551)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~ 215 (551)
...++-..|+++++.+++..
T Consensus 727 AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 33455667888888877654
No 341
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=79.88 E-value=26 Score=27.35 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 204 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
...++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-++-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356788888888777653 233333344556778899999854444555688888877654 47788888888888777
Q ss_pred HcCCCCCHhhH
Q 048830 284 MAGFHPDSITF 294 (551)
Q Consensus 284 ~~g~~p~~~t~ 294 (551)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 4444444
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.33 E-value=90 Score=33.02 Aligned_cols=271 Identities=13% Similarity=0.069 Sum_probs=145.6
Q ss_pred HHHHHHHhccCCC-CChhHHHHHHHH-----HHhcCChHHHHHHHHHhhh-------CCcccCHHHHHHHHHHHHhcC--
Q 048830 140 IEAARSVFDNMPE-RDLVSWNSIISC-----YTQASFHLEALKLYERMRF-------EDVGLDGFTLVCLLSSCAHVG-- 204 (551)
Q Consensus 140 ~~~A~~~~~~m~~-~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~p~~~t~~~ll~~~~~~~-- 204 (551)
...|.+.++.... .++..-..+... +....+.+.|+.+|..+.+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 3556677766654 233333333322 3455788888888888766 44 2223444555555432
Q ss_pred ---ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhcCCC-CHhHHHHHHHHHH----hcCChHHH
Q 048830 205 ---ALNMGIFLHRIACEMGFVESVYVGNALVDMYAK-CGNLDSAFCVFSRMRKR-DVLSWNSMIVGYG----VHGRGDEA 275 (551)
Q Consensus 205 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A 275 (551)
+.+.|..++...-+.|. |+....-..+..... ..+...|.++|....+. .+.+.-.+..+|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 55678888888877763 333333222222222 23567888888876542 3333222222222 33467888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHH---Hhh----cCCHHHHHH
Q 048830 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL---YGR----AGKLEKALE 348 (551)
Q Consensus 276 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~---~~~----~g~~~~A~~ 348 (551)
..++++..+.| .|-..--...+..+.. +.++.+...+..+... +.+--...-..+.+. ... ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 88888888887 4443333333444444 5666555555544332 322211111111111 111 235566666
Q ss_pred HHhhcCCC-CHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC---hhHHHHHHHHHHh
Q 048830 349 VINTSSPS-DPVLWRTLLGSCKIH----RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKS 420 (551)
Q Consensus 349 ~~~~~~~~-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~ 420 (551)
++.++-.. +......|...|... .+.+.|...+.++.+.. +.....|+.++...-- +..|.+++++...
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 66663333 666666666555433 45777888887777666 5566677777665411 5677777776654
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.23 E-value=3.8 Score=24.00 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=25.0
Q ss_pred chHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 393 GDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998765
No 344
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.19 E-value=14 Score=32.02 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=43.8
Q ss_pred CCCCC-ccchhhhhHHHhhcC----CHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 322 NLKPG-IKHYGCLVDLYGRAG----KLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 322 ~~~p~-~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
.+.|+ ..++.++..+|...+ +..+|.++|++ |...|+++...+|+|. .|.
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k------------------------A~~~FqkAv~~~P~ne-~Y~ 117 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEK------------------------ATEYFQKAVDEDPNNE-LYR 117 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHH------------------------HHHHHHHHHHH-TT-H-HHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHH------------------------HHHHHHHHHhcCCCcH-HHH
Confidence 46675 467777777776543 33455555555 8899999999999975 444
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHhCCCccC
Q 048830 397 LLATIYACTKDEEGVARTRKLIKSNGIKTT 426 (551)
Q Consensus 397 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 426 (551)
.-..+. ++|-++..++.+.+....
T Consensus 118 ksLe~~------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 118 KSLEMA------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHH------HTHHHHHHHHHHSSS---
T ss_pred HHHHHH------HhhHHHHHHHHHHHhhhh
Confidence 333333 356777777777766543
No 345
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=78.99 E-value=57 Score=30.54 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=63.0
Q ss_pred hCCcccCHHHHHHHHHHHHhcCChH-HHHHHHHHHHH---hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH
Q 048830 183 FEDVGLDGFTLVCLLSSCAHVGALN-MGIFLHRIACE---MG--FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV 256 (551)
Q Consensus 183 ~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~---~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 256 (551)
+.+.++|......++..+...+.-+ .-..+.+.+++ .+ ..-++.....+...|.+.|++.+|+..|-.-..++.
T Consensus 42 ~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~ 121 (260)
T PF04190_consen 42 KSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSA 121 (260)
T ss_dssp HTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHH
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhH
Confidence 3455566655555555554443221 12222333332 22 223577888899999999999999988876554444
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 320 (551)
..+..++.-....|...++ |...-..++ -|...+++..|...++...++
T Consensus 122 ~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 122 FAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 4443344333333433333 222222333 345568888898888877654
No 346
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.66 E-value=11 Score=37.73 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=76.6
Q ss_pred hcCChHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHH
Q 048830 268 VHGRGDEAI-SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346 (551)
Q Consensus 268 ~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 346 (551)
..|+.-.|- +++.-+......|+.+-..+.| +.+.|+++.+.+.+....+ -+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 345555544 3444444444456665554444 4567888888877776643 3344566677778888888888888
Q ss_pred HHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 347 LEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 347 ~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
..+-..++.. ++.+.......-...|-++++...+++++.++|+.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8777663333 55555555555566777888888888888877653
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.27 E-value=12 Score=28.82 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 048830 71 QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR 132 (551)
Q Consensus 71 ~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 132 (551)
+...-++.+...... |++......++||-+.+++..|.++++-++... .+....|..++.
T Consensus 28 e~rrglN~l~~~DlV-P~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLV-PEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccC-CChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 444555566666777 888888888888888888888888888776542 222335555543
No 348
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.76 E-value=5.1 Score=36.14 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=46.6
Q ss_pred CHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 342 KLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 342 ~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
+++.|..-|.+++-. .+..|..-+-.+.+..+++.+..--.+++++.|+.......|+........+++|...+++.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 344444444433333 33445555555556666666666666666777766666666777777776777777666665
Q ss_pred H
Q 048830 419 K 419 (551)
Q Consensus 419 ~ 419 (551)
.
T Consensus 105 ~ 105 (284)
T KOG4642|consen 105 Y 105 (284)
T ss_pred H
Confidence 3
No 349
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=76.79 E-value=99 Score=32.17 Aligned_cols=179 Identities=15% Similarity=0.080 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHH
Q 048830 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVG 265 (551)
Q Consensus 189 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 265 (551)
+..+|..-+.--...|+.+.+.-+++...-- +..-...|-..+.-....|+.+-|..++....+ +....-..+-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4456666666667778888777777665431 112233444444444455888888877766542 222222222222
Q ss_pred H-HhcCChHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHH------
Q 048830 266 Y-GVHGRGDEAISFFKQMLMAGFHPDSIT-FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY------ 337 (551)
Q Consensus 266 ~-~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~------ 337 (551)
+ -..|+.+.|..+++.....- |+..- -..-+....+.|+.+.+.. ...+.+ .+.++..+++.+-..+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s--~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY-KNELYS--SIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH-HHHHHH--HhcccccCcchhHHHHHHHHHH
Confidence 2 34679999999999988763 55432 2222334456677777764 222222 2233333333333222
Q ss_pred --hhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCc
Q 048830 338 --GRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 338 --~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~ 373 (551)
.-.++.+.|..++.++.+. +...|..++..+..++.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 2368899999999886665 88889999888877663
No 350
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.78 E-value=3.2 Score=24.00 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=24.3
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 394 DYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667899999999999999999988753
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.63 E-value=4.7 Score=22.16 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=10.8
Q ss_pred HHHHHHHhCCCHHHHHHHhc
Q 048830 129 NLMRGYAANGVIEAARSVFD 148 (551)
Q Consensus 129 ~li~~y~~~g~~~~A~~~~~ 148 (551)
.+...+...|+.++|+.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44555555555555555543
No 352
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=75.34 E-value=34 Score=27.38 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-------hcCCCcchHH----HHHHHhhhcCChhHHHHHHHHH
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ-------LEAASAGDYV----LLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m 418 (551)
|...+..|..++...|++++++...+..+. ++.+....|+ .-+.++...|+.++|.+.|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 555666666777777777777766666653 4444333333 4556788889999999988753
No 353
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.87 E-value=7.3 Score=36.97 Aligned_cols=89 Identities=11% Similarity=0.001 Sum_probs=71.2
Q ss_pred hhhhhHHHhhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh
Q 048830 330 YGCLVDLYGRAGKLEKALEVINTSSPS-------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402 (551)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 402 (551)
|.-=.+-|.+..++..|...|.+++.. +.+.|+.-..+-.-.||+..++.-..+++..+|.+...|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 334455677888888898888877755 6777887777777889999999999999999999999998888888
Q ss_pred hhcCChhHHHHHHHHH
Q 048830 403 ACTKDEEGVARTRKLI 418 (551)
Q Consensus 403 ~~~g~~~~a~~~~~~m 418 (551)
....++++|....++.
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888877776655443
No 354
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=74.36 E-value=1.6e+02 Score=33.39 Aligned_cols=254 Identities=8% Similarity=-0.073 Sum_probs=151.0
Q ss_pred HHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 048830 43 LLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER 122 (551)
Q Consensus 43 ~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 122 (551)
.+...+..+|..+--..+..+.+.+. .++...+...+.. +|...-...+.++.+.+........+..+++ .+
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD----GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 44455567777777777787777775 4455666666543 4444444555555444321111223333333 36
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh
Q 048830 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202 (551)
Q Consensus 123 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 202 (551)
|..+....+..+...+.- ....+...+..+|...-...+.++.+.+..+.. .... -.++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHHH
Confidence 777777777777654322 123455666677877767777777776554322 2222 24566666667777777
Q ss_pred cCChHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 048830 203 VGALNM-GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF-CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280 (551)
Q Consensus 203 ~~~~~~-a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (551)
.+..+. +...+..+.+ .++..+-.+.+.++.+.|..+.+. .+...+..+|...-...+.++...+. +++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 765443 2344444433 457888888899999998876553 34455556676666667777777765 45666666
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 281 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
.+.. .|+...-...+.++.+......+...+..+.+
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6654 56776666777777775434566666666654
No 355
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.22 E-value=1.4e+02 Score=32.74 Aligned_cols=214 Identities=14% Similarity=0.017 Sum_probs=119.0
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchh-------HHHHHH-HHHHhcCCHHHHHHHHHhcCC--------CCHhHHHHHHH
Q 048830 201 AHVGALNMGIFLHRIACEMGFVESVY-------VGNALV-DMYAKCGNLDSAFCVFSRMRK--------RDVLSWNSMIV 264 (551)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~li-~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 264 (551)
....++++|..+..++...-..|+.. .+++|- ......|++++|.++-+.... ..++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678899999988887653333222 233332 223456888888887765532 46677888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHH---HHH--HHHhccCCH--HHHHHHHHHhHHhcCCCCC-----ccchhh
Q 048830 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFL---GLL--CGCSHQGLV--EEGVEYFHMMVSRYNLKPG-----IKHYGC 332 (551)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll--~~~~~~g~~--~~a~~~~~~~~~~~~~~p~-----~~~~~~ 332 (551)
+..-.|++++|..+.++..+.--.-|...|. .+. ..+...|.. .+....|............ ..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 9999999999999888776542223333222 222 124455632 3333333333322111111 223333
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCC-------CHHH---HHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC--cchHH----
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPS-------DPVL---WRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDYV---- 396 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~-------~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~---- 396 (551)
+..++.+ ++.+..-...++.. .... +..|+......|+.+.|.....++..+..++ ...|.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 3444443 44444333332222 2222 2356678888999999999999988764332 22222
Q ss_pred -HHHHHhhhcCChhHHHHHHHH
Q 048830 397 -LLATIYACTKDEEGVARTRKL 417 (551)
Q Consensus 397 -~l~~~~~~~g~~~~a~~~~~~ 417 (551)
.-.......|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222334556888887776654
No 356
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=73.92 E-value=1.6e+02 Score=33.31 Aligned_cols=255 Identities=5% Similarity=-0.109 Sum_probs=137.3
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 048830 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222 (551)
Q Consensus 143 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 222 (551)
...+...+..+|...-..-+..+.+.+.. ++...+....+ .+|...-...+.++...+........+..+.+.
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~--- 695 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS--- 695 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---
Confidence 34555556677877777777777777654 35555555543 344444445555555443211112233333332
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 223 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
+|..+-...++++...+.- ....+...+..+|...-...+.++...+..+. +.... -.++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 5666666666666654321 12344555667777666666777766655432 12222 2456665566666766
Q ss_pred ccCCHHH-HHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhcCcHHHHHHH
Q 048830 303 HQGLVEE-GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIA 380 (551)
Q Consensus 303 ~~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~ 380 (551)
..+..+. +...+..+.+ .++...-...+.++.+.|..+.+...+..++.. +..+-...+.++...+. +++...
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 6665432 3344444433 356777777888888888766554444443555 66666667777777665 345555
Q ss_pred HHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 381 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+..+++ +| ++..-...+.++.+.+.-..+...+....
T Consensus 843 L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 843 LVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 555443 22 23444445555555432345555554443
No 357
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=73.77 E-value=59 Score=34.72 Aligned_cols=182 Identities=19% Similarity=0.263 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH----------HHHHHHHHHHhcCChHHHHHHHHHHHHh-C-CCCc
Q 048830 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF----------TLVCLLSSCAHVGALNMGIFLHRIACEM-G-FVES 224 (551)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~ 224 (551)
+-..|+..|-...+++..+++.+.++.. ||.. .|...++---+-|+-++|..+.-.+++. | +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 4455666777788888888888887653 3322 2333333333456666777665555543 2 233
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh---HHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT---FLGLLCGC 301 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~ 301 (551)
++||-||++ |..|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-
T Consensus 279 --------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 --------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 345555543 22221 11234555666778888888776 4676643 44444332
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 048830 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381 (551)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 381 (551)
.+ .++...++ +.+ | ..|-.++++.|.+++..++++- ...+.+-.-..|+.+|..+.
T Consensus 334 G~--~Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV---------~~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 334 GE--HFENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDV---------ATYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred hh--hccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhH---------HHhhhhhhhccCHHHHHHHH
Confidence 22 11111111 111 1 2345567899999998888876 34556666788999999999
Q ss_pred HHHHhhcCCC
Q 048830 382 KNLVQLEAAS 391 (551)
Q Consensus 382 ~~~~~~~p~~ 391 (551)
++|.++.|..
T Consensus 390 e~mfKLk~P~ 399 (1226)
T KOG4279|consen 390 EMMFKLKPPV 399 (1226)
T ss_pred HHHhccCCce
Confidence 9999999773
No 358
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.40 E-value=1.4e+02 Score=32.25 Aligned_cols=92 Identities=7% Similarity=-0.210 Sum_probs=54.8
Q ss_pred HHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc---CCCcchHHHHHHHhhhcCChhH
Q 048830 335 DLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE---AASAGDYVLLATIYACTKDEEG 410 (551)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~ 410 (551)
..+...|...+|...+...+.. +......+...-...|..+.+.....+....+ -.-|..|......+++.-..+.
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~ 494 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQ 494 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCH
Confidence 4455667888887777663444 55556666666677888888877765543321 1124456666666666666666
Q ss_pred HHHHHHHHHhCCCccC
Q 048830 411 VARTRKLIKSNGIKTT 426 (551)
Q Consensus 411 a~~~~~~m~~~g~~~~ 426 (551)
+.-.--..++.+..|.
T Consensus 495 ~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 495 SYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 5543333345566554
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.07 E-value=13 Score=33.17 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=37.1
Q ss_pred hhhhHHHhhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 331 GCLVDLYGRAGKLEKALEVINTSS---PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
+.-+..+.+.+.+++|+...+.-+ |.|...-..|+..++..|++++|..-++-+-++.|+.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 334455566666666666554322 2266666666677777777777777666666666653
No 360
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=72.75 E-value=14 Score=28.03 Aligned_cols=45 Identities=11% Similarity=0.000 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
...+++.++.+|+|...-..++..+...|++++|.+.+-.+.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445677778889988888889999999999999998887776543
No 361
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=72.38 E-value=90 Score=29.60 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhcCcHHHH
Q 048830 358 PVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a 377 (551)
...|..|+.+++..|+.+..
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 45677777777777776654
No 362
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.74 E-value=91 Score=34.55 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhh
Q 048830 157 SWNSIISCYTQASFHLEALKLYERMRF 183 (551)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (551)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 377889999999999999999988865
No 363
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.65 E-value=86 Score=29.10 Aligned_cols=184 Identities=13% Similarity=0.028 Sum_probs=110.1
Q ss_pred hcCChHHHHHHHHHhhhCCcccCHH---HHHHHHHHHHhcCChHHHHHHHHHHHH---hCC--CCchhHHHHHHHHHHhc
Q 048830 167 QASFHLEALKLYERMRFEDVGLDGF---TLVCLLSSCAHVGALNMGIFLHRIACE---MGF--VESVYVGNALVDMYAKC 238 (551)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~---~g~--~~~~~~~~~li~~y~~~ 238 (551)
+...+++|+.-|.+..+....--.. ...-++....+.+++++....+.+++. +.+ .-+....|++++.-+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4458899999999887643333333 334567777888888888888777653 211 22345667777777766
Q ss_pred CCHHHHHHHHHhcCC-----CCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCH-------hhHHHHH
Q 048830 239 GNLDSAFCVFSRMRK-----RDVL----SWNSMIVGYGVHGRGDEAISFFKQMLMAGF----HPDS-------ITFLGLL 298 (551)
Q Consensus 239 g~~~~A~~~~~~~~~-----~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~-------~t~~~ll 298 (551)
.+.+--..+++.-.+ +|.. |-+-+...|...|.+.+-..+++++...-. .-|. ..|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666665555554321 2222 234567777788888888888887765321 1111 2355556
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhh----hHHHhhcCCHHHHHHHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL----VDLYGRAGKLEKALEVI 350 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~~~~ 350 (551)
..|....+-..-..++++.+....-.|.+.+...+ ..+..+.|++++|..-|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 66666777677777777665433444544333222 23445667777775433
No 364
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.31 E-value=2.6e+02 Score=34.58 Aligned_cols=25 Identities=4% Similarity=-0.234 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 375 EIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 375 ~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
+..+..|.++.+..|.....|..++
T Consensus 1772 ~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHHHHHHcccccCceeeHH
Confidence 3445556666666664444333333
No 365
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.26 E-value=25 Score=23.54 Aligned_cols=26 Identities=15% Similarity=-0.082 Sum_probs=21.8
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 395 YVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 395 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
...++-++.+.|++++|.+..+.+.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45678899999999999999998875
No 366
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.40 E-value=86 Score=28.57 Aligned_cols=54 Identities=17% Similarity=0.350 Sum_probs=30.4
Q ss_pred hhcCCHHHHHHHHhhcCCC----CHHHHHH---HH--HHHHh-cCcHHHHHHHHHHHHhhcCCC
Q 048830 338 GRAGKLEKALEVINTSSPS----DPVLWRT---LL--GSCKI-HRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~----~~~~~~~---ll--~~~~~-~g~~~~a~~~~~~~~~~~p~~ 391 (551)
+..+++.+|+++|++.... +..-|.. ++ ..|.- ..|.-.+...+++-.+++|.-
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 4566777777777662111 2222221 12 22322 266667788888888888873
No 367
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.30 E-value=9.8 Score=21.63 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=23.2
Q ss_pred CcHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 048830 372 RNVEIGEIAMKNLVQLEAASAGDYVLLAT 400 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 400 (551)
|+.+.+..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788899999999888888887776654
No 368
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=69.49 E-value=44 Score=26.34 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
-|..++..|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888888776
No 369
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.40 E-value=10 Score=40.83 Aligned_cols=120 Identities=21% Similarity=0.310 Sum_probs=75.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHH
Q 048830 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL 347 (551)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 347 (551)
-+.++++.+.+.+...--| .++|..+.+.|-++-|+.+.+.=..+ ..+...+|+++.|+
T Consensus 605 i~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~al 663 (1202)
T KOG0292|consen 605 LNKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVAL 663 (1202)
T ss_pred HhhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHH
Confidence 3456666666555433222 23555566777777776655433222 22345678898888
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 348 EVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 348 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
+.-.+ +. +..+|..|+..-...|+.+.|+..|++... |..|.-.|.-.|+.++-.++.+..
T Consensus 664 e~akk-ld-d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 664 EAAKK-LD-DKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred HHHHh-cC-cHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHHHHHHH
Confidence 77665 33 888899999888889999999888887653 334445566666666555444433
No 370
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.26 E-value=53 Score=25.70 Aligned_cols=87 Identities=10% Similarity=0.070 Sum_probs=54.8
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 048830 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182 (551)
Q Consensus 103 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (551)
...++|..+.+.+...+- ....+--+-+..+.+.|++++|...=.....||...|-+|-. .+.|..+++..-+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 457788888888877653 233333344556788999999955555556688888876654 47888888888888776
Q ss_pred hCCcccCHHHH
Q 048830 183 FEDVGLDGFTL 193 (551)
Q Consensus 183 ~~~~~p~~~t~ 193 (551)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 655 4444444
No 371
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=69.15 E-value=70 Score=31.62 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=38.1
Q ss_pred CHHHHHHHH---HHHHhcCcHHHHHHHHHHHHhhcCC-CcchHHHHHHHhh-hcCChhHHHHHHHHH
Q 048830 357 DPVLWRTLL---GSCKIHRNVEIGEIAMKNLVQLEAA-SAGDYVLLATIYA-CTKDEEGVARTRKLI 418 (551)
Q Consensus 357 ~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m 418 (551)
|...|.++. ..+.+.|-+..|.+..+-++.++|. ||-.-...++.|+ ++++++--.++.+..
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 555555554 4566677777777777777777777 6655555555554 334555555555543
No 372
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.98 E-value=22 Score=32.32 Aligned_cols=63 Identities=8% Similarity=-0.079 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
..+-..-.++...|++-++++.-..++...|.|..+|..-+.+.+..=+.++|..=|....+.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 334444566677899999999999999999999999999999998888888888888777653
No 373
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=67.75 E-value=1.8e+02 Score=31.24 Aligned_cols=191 Identities=17% Similarity=0.078 Sum_probs=114.3
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHH-cCCCCCCh--hhHHHHHHHHh-ccCChHHHHHHHHHHHHhCCCCChh
Q 048830 50 NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM-ASLSRPDT--FTFTFTLKACE-RVKALNKCQELHGFVIRSGYERCVV 125 (551)
Q Consensus 50 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~~~~~pd~--~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~ 125 (551)
+.++..|..||.. |+..++-..+ ..+. |.. .++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~-p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~ 96 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLS-PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT 96 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 4567788888874 6777777764 2332 332 34555556555 6789999999999886654333322
Q ss_pred -----HHHHHHHHHHhCCCHHHHHHHhccCCC----CChhHHH----HH-HHHHHhcCChHHHHHHHHHhhhCC---ccc
Q 048830 126 -----VSTNLMRGYAANGVIEAARSVFDNMPE----RDLVSWN----SI-ISCYTQASFHLEALKLYERMRFED---VGL 188 (551)
Q Consensus 126 -----~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~----~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p 188 (551)
....++..|.+.+... |.+.+++..+ .....|. -+ +..+...+++..|++.++.+...- ..|
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 2345677788877776 8888777543 1112222 22 222333479999999998876532 234
Q ss_pred CHHHHHHHHHHHHh--cCChHHHHHHHHHHHHhCC---------CCchhHHHHHHHHH--HhcCCHHHHHHHHHhc
Q 048830 189 DGFTLVCLLSSCAH--VGALNMGIFLHRIACEMGF---------VESVYVGNALVDMY--AKCGNLDSAFCVFSRM 251 (551)
Q Consensus 189 ~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~~y--~~~g~~~~A~~~~~~~ 251 (551)
-...+..++.+... .+..+.+.+..+.+..... .|...++..+++.+ ...|+++.+...++++
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555566666543 3445666666665543211 33456666666644 4667766666655544
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=67.34 E-value=44 Score=34.53 Aligned_cols=133 Identities=13% Similarity=0.008 Sum_probs=89.4
Q ss_pred CCCHhhHHHHHHHHhccC--CHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC----CHHHH
Q 048830 288 HPDSITFLGLLCGCSHQG--LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS----DPVLW 361 (551)
Q Consensus 288 ~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 361 (551)
.|+..|...++.-....- ..+-|-.++..|.+ .+.|--...+.-.--+.-.|+...|..-+..++-. ..+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 467666666655444322 23445555555532 34443333332222234468888888887765543 44445
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 362 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
..|.....+.|-.-.|-.++.+.+.+.-..|-++..++++|....+.+.|++.|+...+..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 5666667777777788999999999988889999999999999999999999998776543
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.00 E-value=18 Score=26.49 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=21.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCCHHHHHH
Q 048830 268 VHGRGDEAISFFKQMLMAGFHPDS--ITFLGLLCGCSHQGLVEEGVE 312 (551)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~ 312 (551)
...+.++|+..|+...+.-..|.. .++..++.+++..|+++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555543222221 344455555555555555443
No 376
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=66.54 E-value=1.9 Score=30.02 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=16.1
Q ss_pred ceEEEecCCcccccCCCcCC
Q 048830 527 RDLIVRDRVRYHHFRDGLCS 546 (551)
Q Consensus 527 r~i~~~d~~~~h~f~~g~cs 546 (551)
..|=+.|.+-.|+|+|||-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 45778899999999999854
No 377
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.17 E-value=1.8e+02 Score=30.74 Aligned_cols=46 Identities=13% Similarity=0.031 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHH--HH-HhccCChHHHHHHHHHHHH
Q 048830 70 LQAIFYYNHMLMASLSRPDTFTFTFTL--KA-CERVKALNKCQELHGFVIR 117 (551)
Q Consensus 70 ~~A~~l~~~m~~~~~~~pd~~~~~~ll--~~-~~~~~~~~~a~~~~~~~~~ 117 (551)
..|.+.++.....|.. ........+ .+ .....+.+.|...+..+.+
T Consensus 229 ~~a~~~~~~~a~~g~~--~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHS--EAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hHHHHHHHHHHhhcch--HHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 4566666666555431 111111111 11 3344566777777666655
No 378
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=65.40 E-value=11 Score=33.96 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=44.2
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
+..+.|+.+.|.+++.+++.. ....|--+...--+.|+++.|...+++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 445677778888888776655 77778888888888889999999999998888774
No 379
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=65.27 E-value=96 Score=33.27 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=35.6
Q ss_pred HHHHHHHhCCCHHHHHHHhccCC---CCChhHHHHHHHHHHhcCC-------hHHHHHHHHHhhhCCcccCHH
Q 048830 129 NLMRGYAANGVIEAARSVFDNMP---ERDLVSWNSIISCYTQASF-------HLEALKLYERMRFEDVGLDGF 191 (551)
Q Consensus 129 ~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~ 191 (551)
++|--+.|+|++++|.++..+.. ++....+-..+..|..+.+ -++...-|.+........|++
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 47777889999999999983332 2334455666666665422 235555666665544322443
No 380
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.01 E-value=4.8 Score=40.12 Aligned_cols=96 Identities=8% Similarity=0.017 Sum_probs=68.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhh-hhHHHhhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHhcC
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-LVDLYGRAGKLEKALEVINTSSPSD---PVLWRTLLGSCKIHR 372 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~g 372 (551)
-+..+...+.++.|..++.+++ .+.|+-.+|-+ =..++.+.+++..|+.=+.++++.+ ...|--=..+|.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 3455667788999999999887 46786554443 3478888888888887777766664 223333346677778
Q ss_pred cHHHHHHHHHHHHhhcCCCcchH
Q 048830 373 NVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
.+.+|...|+....+.|+++..-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHH
Confidence 88889999999888999877543
No 381
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.85 E-value=2.1e+02 Score=31.00 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=87.0
Q ss_pred HhccCChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHH
Q 048830 99 CERVKALNKCQELHGFVIRSGYER---CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175 (551)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 175 (551)
+.+.+.+++|..+-+... |..| ...+....|+.+.-.|++++|-...-.|...+..-|.-.+..+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 344555666665544332 2233 34466777888888888888888888887777777877777777777665543
Q ss_pred HHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------------CC-------CCchhHHHHHHHHHH
Q 048830 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM------------GF-------VESVYVGNALVDMYA 236 (551)
Q Consensus 176 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------------g~-------~~~~~~~~~li~~y~ 236 (551)
.+ +.......+...|..++..+.. .+. ..+++.+.+. .. .-+..+...|+..|.
T Consensus 444 ~~---lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl 516 (846)
T KOG2066|consen 444 PY---LPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYL 516 (846)
T ss_pred cc---CCCCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHH
Confidence 33 2221112344455556655544 111 1111111110 00 112234455888999
Q ss_pred hcCCHHHHHHHHHhcCCCCH
Q 048830 237 KCGNLDSAFCVFSRMRKRDV 256 (551)
Q Consensus 237 ~~g~~~~A~~~~~~~~~~~~ 256 (551)
..++++.|...+-...++++
T Consensus 517 ~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 517 YDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HccChHHHHHHHHhccChHH
Confidence 99999999999888876654
No 382
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.63 E-value=85 Score=26.36 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=23.2
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 048830 66 SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117 (551)
Q Consensus 66 ~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (551)
.++++++..++..|.-..+..|...++...+ +...|++.+|.+++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhc
Confidence 4555555555555544433323333333333 2344555555555555544
No 383
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.51 E-value=70 Score=29.95 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=52.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--cCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHh--
Q 048830 263 IVGYGVHGRGDEAISFFKQMLM--AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG-- 338 (551)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-- 338 (551)
|.+++..+++.+++...-+--+ ..++|...-. -|-.|++.+.+..+.++-..-.+. .-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 5677777777777665443332 1234433333 333477778877777777666554 22223444777776664
Q ss_pred ---hcCCHHHHHHHHhh
Q 048830 339 ---RAGKLEKALEVINT 352 (551)
Q Consensus 339 ---~~g~~~~A~~~~~~ 352 (551)
-.|.+++|++++..
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 46888888888754
No 384
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.10 E-value=1.8e+02 Score=29.91 Aligned_cols=48 Identities=25% Similarity=0.170 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 048830 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238 (551)
Q Consensus 189 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 238 (551)
|.....+++..+.+...+.-++.+..++...| .+...+..++.+|...
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en 112 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN 112 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc
Confidence 34444444444544444444444444444433 2333444444444444
No 385
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.93 E-value=1e+02 Score=27.17 Aligned_cols=89 Identities=11% Similarity=0.009 Sum_probs=54.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhH--HHHHHHHHHhcCChH
Q 048830 198 SSCAHVGALNMGIFLHRIACEMGFVES--VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLS--WNSMIVGYGVHGRGD 273 (551)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 273 (551)
..+...+++++|...++......-..+ ..+--.|.......|.+++|...++....++-.+ ...-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 344566667777666665554211111 1122234556677788888888888777664333 333345678888888
Q ss_pred HHHHHHHHHHHcC
Q 048830 274 EAISFFKQMLMAG 286 (551)
Q Consensus 274 ~A~~~~~~m~~~g 286 (551)
+|..-|++..+.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888877764
No 386
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.93 E-value=57 Score=26.55 Aligned_cols=42 Identities=14% Similarity=-0.090 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhc--CCCcchHHHHHHHhhhcCChhHHHHHHHH
Q 048830 376 IGEIAMKNLVQLE--AASAGDYVLLATIYACTKDEEGVARTRKL 417 (551)
Q Consensus 376 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 417 (551)
.+..+|+.|...+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7788888888754 55677888999999999999999998865
No 387
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.55 E-value=2.5e+02 Score=31.36 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=12.6
Q ss_pred HhcCChHHHHHHHHHHHH
Q 048830 201 AHVGALNMGIFLHRIACE 218 (551)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~ 218 (551)
.+.|+.++|..++-..+.
T Consensus 695 ~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 695 GRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhhHHHHHHHHHHHhc
Confidence 377778888877766554
No 388
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.19 E-value=56 Score=24.48 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHH
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 276 (551)
+.+++....+.|+- +......+-.+-...|+.+.|.+++..++ +.+..|..++.++...|..+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 34455555665532 22222332222235688888888888888 88888888888888888766554
No 389
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.09 E-value=46 Score=26.20 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=25.3
Q ss_pred cchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 392 AGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
..-|..|+..|...|..++|.+++.+..+
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45788999999999999999999988765
No 390
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.02 E-value=1.4e+02 Score=28.25 Aligned_cols=111 Identities=13% Similarity=0.115 Sum_probs=71.6
Q ss_pred CChHHHHHHHHHHHH-cCCCCCHhhHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHH
Q 048830 270 GRGDEAISFFKQMLM-AGFHPDSITFLGLLCGCSH--QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346 (551)
Q Consensus 270 g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 346 (551)
..+.+|+.+|+...- ..+--|..+...+++.... ......-.++.+.+...++-.++..+...+++.+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 335566777763221 2244466666666665544 1233334455555656566777888888888999999999998
Q ss_pred HHHHhhcCCC-----CHHHHHHHHHHHHhcCcHHHHHHH
Q 048830 347 LEVINTSSPS-----DPVLWRTLLGSCKIHRNVEIGEIA 380 (551)
Q Consensus 347 ~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~ 380 (551)
.++++...+. |...|..++..-...||......+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 8888874443 777888888887777776544433
No 391
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.95 E-value=43 Score=27.94 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=27.1
Q ss_pred CChhhHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 048830 87 PDTFTFTFTLKACERVKA-LNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136 (551)
Q Consensus 87 pd~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 136 (551)
.|..+|..++++.++... --.+..+|..+.+.+.+.++.-|..++.++.+
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 344556666666554444 33445555555555555555556656555443
No 392
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=62.73 E-value=48 Score=27.25 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHh-hcCCCcc-hHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 373 NVEIGEIAMKNLVQ-LEAASAG-DYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 373 ~~~~a~~~~~~~~~-~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+..++..+++.+.+ -.|.... -...|+-.+.+.++++.+.++.+...+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555666666665 2233322 223455566666666666666665543
No 393
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=62.23 E-value=1.9e+02 Score=29.60 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
|+..|...+.--..+|..+-+-.++.++.+
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 555555555555555555555555554443
No 394
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.75 E-value=18 Score=26.39 Aligned_cols=45 Identities=2% Similarity=-0.106 Sum_probs=33.7
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCcchHH---HHHHHhhhcCChhHHHHH
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASAGDYV---LLATIYACTKDEEGVART 414 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~ 414 (551)
...+.+.|+..++++++..++.+.-|. .|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899998888766655444 566778888888887775
No 395
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.60 E-value=68 Score=24.25 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC--CcchHHHHHHHhhhcCChh-HHHHHHHHH
Q 048830 344 EKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA--SAGDYVLLATIYACTKDEE-GVARTRKLI 418 (551)
Q Consensus 344 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 418 (551)
+....-+.. -|.|....-.+...+...|+++.|.+.+-.+++.++. +...-..|+.++.-.|.-+ -+.+.+++|
T Consensus 9 ~al~~~~a~-~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 9 AALEAALAA-NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 334444444 5557777777888888888888888888888887755 3556667777777777643 444444444
No 396
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=61.23 E-value=1.3e+02 Score=31.06 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 229 NALVDMYAKCGNLDSAFCVFSRMRKR-----DVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 229 ~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
..|+.-|.+.+++++|..++..|.=. -..+.+.+...+.+..-.++.+..++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35677899999999999999888632 122334444455555545555555555554
No 397
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.43 E-value=72 Score=28.79 Aligned_cols=45 Identities=9% Similarity=-0.048 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhc--CC----CcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 377 GEIAMKNLVQLE--AA----SAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 377 a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
|...|+++.+.+ |. .......++.++.+.|+.++|.+.|.++...
T Consensus 144 Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 144 ALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 556666666544 22 2346667889999999999999999988654
No 398
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.57 E-value=22 Score=22.67 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=12.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh
Q 048830 161 IISCYTQASFHLEALKLYERMRF 183 (551)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~ 183 (551)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555543
No 399
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.93 E-value=2.1e+02 Score=29.14 Aligned_cols=354 Identities=12% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHHcCC--ChhHHHHHHHHHHHcCCCCCChhhHHHHHHH----HhccCChHHHHHHHHHHHHhCCCCChh------H
Q 048830 59 LIRAFAQSL--SPLQAIFYYNHMLMASLSRPDTFTFTFTLKA----CERVKALNKCQELHGFVIRSGYERCVV------V 126 (551)
Q Consensus 59 li~~~~~~g--~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~g~~~~~~------~ 126 (551)
+...+-..| +...+++.++......+ |+..--.+=+.. +.-..+++.|+.-++.....--+-..+ +
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~i--s~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a 90 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQI--SFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQA 90 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHH
Q ss_pred HHHHHHHHHhCC-CHHHHHHHhccCCC--CChhHHHH-----HHHHHHhcCChHHHHHHHHHhhhCC-------------
Q 048830 127 STNLMRGYAANG-VIEAARSVFDNMPE--RDLVSWNS-----IISCYTQASFHLEALKLYERMRFED------------- 185 (551)
Q Consensus 127 ~~~li~~y~~~g-~~~~A~~~~~~m~~--~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~------------- 185 (551)
++.|...|.... .++.|..++++..+ .+...|.. |+..+.-..++..|.+++.-=-+..
T Consensus 91 ~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ft 170 (629)
T KOG2300|consen 91 ASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFT 170 (629)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHH
Q ss_pred --------cccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---
Q 048830 186 --------VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR--- 254 (551)
Q Consensus 186 --------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--- 254 (551)
..||......+++.|...-+--.......++++ ++..+.-+.-|.-.|+...+...++++.+.
T Consensus 171 ls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lk------vFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqt 244 (629)
T KOG2300|consen 171 LSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLK------VFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQT 244 (629)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHH------HHHHHHHHHHHhcccchhhhHHHHHHHHHHHhc
Q ss_pred -----------------------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCH-----------h
Q 048830 255 -----------------------------DVLSWNSMIVGYGVHGRGDEAISFFKQMLM--AGFHPDS-----------I 292 (551)
Q Consensus 255 -----------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~-----------~ 292 (551)
++-.|..-...-...|-+++|.++-++... ..++--. .
T Consensus 245 ist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~ 324 (629)
T KOG2300|consen 245 ISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMI 324 (629)
T ss_pred cCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--------ccchhhhhHHHhhcCCHHHHHHHHhhcCCC------CH
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG--------IKHYGCLVDLYGRAGKLEKALEVINTSSPS------DP 358 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~ 358 (551)
+.-.++.+-.-.|+..+|++-...|..-..-.|. ......+..-+...+.++.|+.-|..+++. -.
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC-------cchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS-------AGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
..-..+...|.+.|+.+.-.++++.+--.+..+ ...+..-+-.....+++.||.....+-.+
T Consensus 405 ~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
No 400
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.23 E-value=1.7e+02 Score=27.70 Aligned_cols=113 Identities=18% Similarity=0.179 Sum_probs=69.4
Q ss_pred cCChHHHHHHHHHhhh-CCcccCHHHHHHHHHHHHh-cC-ChHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHH
Q 048830 168 ASFHLEALKLYERMRF-EDVGLDGFTLVCLLSSCAH-VG-ALNMGIFLHRIACE-MGFVESVYVGNALVDMYAKCGNLDS 243 (551)
Q Consensus 168 ~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~ 243 (551)
+....+|+++|+.... ..+--|..+...+++.... .+ ....--++...+.. .+-.++..+...++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345566666663322 2345566666666666654 11 22222233333333 2346677777788888888888888
Q ss_pred HHHHHHhcC-----CCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 048830 244 AFCVFSRMR-----KRDVLSWNSMIVGYGVHGRGDEAISFFK 280 (551)
Q Consensus 244 A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (551)
-.++++... ..|...|..+|..-..+|+..-...+..
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 888887654 3478888888888888888655444443
No 401
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.87 E-value=1.3e+02 Score=28.25 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=10.9
Q ss_pred HHHHHHhhcCCCcchHHHH
Q 048830 380 AMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 380 ~~~~~~~~~p~~~~~~~~l 398 (551)
++--+++++|..|..+-.+
T Consensus 266 LyLLv~R~DPA~Pss~p~i 284 (309)
T PF07163_consen 266 LYLLVVRLDPASPSSLPWI 284 (309)
T ss_pred HHHHheeecCCCCCcchHH
Confidence 3444456777776655543
No 402
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.21 E-value=36 Score=25.91 Aligned_cols=52 Identities=12% Similarity=-0.075 Sum_probs=37.0
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCC---------cchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAAS---------AGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.+.||+..|.+.+.+.+.....+ ..+...++.++...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888877777777543211 23445678889999999999999988754
No 403
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=56.81 E-value=1.5e+02 Score=27.18 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=79.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhc
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH-QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 340 (551)
++...-+.|+++++...++++...+...+..--+.|-.+|-. .|....+++++.....+..-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 456667788888888888888887666666555555555532 34445556666555443111111 1222223222210
Q ss_pred ------CCHHHHHHHHhhcCCC------CHHHHHHHH-HHH---H-------hcCcHHHHHHHHHHHHh-----hcCCCc
Q 048830 341 ------GKLEKALEVINTSSPS------DPVLWRTLL-GSC---K-------IHRNVEIGEIAMKNLVQ-----LEAASA 392 (551)
Q Consensus 341 ------g~~~~A~~~~~~~~~~------~~~~~~~ll-~~~---~-------~~g~~~~a~~~~~~~~~-----~~p~~~ 392 (551)
.--.+...+++..+-. ..+.|.-+- ..| + +..-.+.|...|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1123344444441211 122222221 111 1 11124678888888875 346666
Q ss_pred chHHHHH----HHhhhcCChhHHHHHHHHHHhCC
Q 048830 393 GDYVLLA----TIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 393 ~~~~~l~----~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
.-..... -.|...|+.++|.++-+..-+..
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 4332222 23566799999999887765543
No 404
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.82 E-value=1.6e+02 Score=29.47 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=33.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHh--hHHHHHHHHh--ccCCHHHHHHHHHHhHH
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPDSI--TFLGLLCGCS--HQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~~~~ 319 (551)
+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34677788888888887775 444443 3334444443 35567778777777654
No 405
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.66 E-value=31 Score=22.02 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=11.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 048830 263 IVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~ 284 (551)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444555555555555555443
No 406
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.23 E-value=1.4e+02 Score=28.59 Aligned_cols=19 Identities=11% Similarity=0.013 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhcCCCcch
Q 048830 376 IGEIAMKNLVQLEAASAGD 394 (551)
Q Consensus 376 ~a~~~~~~~~~~~p~~~~~ 394 (551)
.|.++.-++.+.+|.-|..
T Consensus 380 ~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred HHHHHHHHHhhcCCCCcHH
Confidence 4667777778888876543
No 407
>PRK13342 recombination factor protein RarA; Reviewed
Probab=53.13 E-value=2.6e+02 Score=28.29 Aligned_cols=44 Identities=16% Similarity=-0.026 Sum_probs=27.9
Q ss_pred HHHHHHHHHHh---cCChHHHHHHHHHhhhCCcccCHHHHHHHHHHH
Q 048830 157 SWNSIISCYTQ---ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200 (551)
Q Consensus 157 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 200 (551)
.+..+++++.+ ..+++.|+..+..|.+.|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34455555555 367888888888888887766655444444443
No 408
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.08 E-value=27 Score=31.47 Aligned_cols=56 Identities=9% Similarity=0.007 Sum_probs=50.9
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
....++.+.+.+++.+++++-|.....|..++....++|+.+.|.+.+++..+.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 45678999999999999999999999999999999999999999999998876544
No 409
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=53.05 E-value=49 Score=19.99 Aligned_cols=30 Identities=10% Similarity=-0.129 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCcHHHHHHH--HHHHHhhcCC
Q 048830 361 WRTLLGSCKIHRNVEIGEIA--MKNLVQLEAA 390 (551)
Q Consensus 361 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 390 (551)
|-.+.-.+-..|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44455555666666666666 3355555443
No 410
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.31 E-value=2.1e+02 Score=27.03 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHhh-HHHHHHHHhccCCHHHHHHHHHHhHHh
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQML----MAGFHPDSIT-FLGLLCGCSHQGLVEEGVEYFHMMVSR 320 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~ 320 (551)
.+|..+..-|++.++.+.+.++.++.. ..|.+.|... -..|.-.|....-+++-++..+.|.++
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk 184 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK 184 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 345555555666666555555444332 2344444321 112222333333445555555555554
No 411
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.95 E-value=2.3e+02 Score=28.52 Aligned_cols=79 Identities=10% Similarity=0.011 Sum_probs=39.8
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCChhh--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCC
Q 048830 63 FAQSLSPLQAIFYYNHMLMASLSRPDTFT--FTFTLKACERVKALNKCQELHGFVIRSGYERCVV--VSTNLMRGYAANG 138 (551)
Q Consensus 63 ~~~~g~~~~A~~l~~~m~~~~~~~pd~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g 138 (551)
.++.|+.+- ++.+.+.|.. |+... ..+.+..++..|+.+-+ +.+.+.|..|+.. ...+.+...++.|
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~-~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGIN-PNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 345566544 3444455655 55432 23344555566666533 3445555544322 1122344555677
Q ss_pred CHHHHHHHhccC
Q 048830 139 VIEAARSVFDNM 150 (551)
Q Consensus 139 ~~~~A~~~~~~m 150 (551)
+.+.+..+++.-
T Consensus 80 ~~~~v~~Ll~~~ 91 (413)
T PHA02875 80 DVKAVEELLDLG 91 (413)
T ss_pred CHHHHHHHHHcC
Confidence 777776666543
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.87 E-value=42 Score=29.63 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=15.4
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 288 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
.|+..+|..++.++...|+.++|.++.+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555555544443
No 413
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.72 E-value=1.7e+02 Score=29.41 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhc
Q 048830 231 LVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 231 li~~y~~~g~~~~A~~~~~~~ 251 (551)
++...+..|+.+-+.-+++.-
T Consensus 205 ~l~~A~~~~~~~iv~~Ll~~g 225 (413)
T PHA02875 205 ALCYAIENNKIDIVRLFIKRG 225 (413)
T ss_pred HHHHHHHcCCHHHHHHHHHCC
Confidence 344344555655555555543
No 414
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.03 E-value=93 Score=25.24 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 048830 72 AIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117 (551)
Q Consensus 72 A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (551)
..+-++.+...++. |++......+++|-+.+++..|.++++-++.
T Consensus 68 vrkglN~l~~yDlV-P~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLV-PSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccC-CChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445556666777 8888888888888888888888888877654
No 415
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=49.53 E-value=31 Score=32.55 Aligned_cols=59 Identities=15% Similarity=0.266 Sum_probs=34.9
Q ss_pred hhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 338 GRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
.+.|+.++|..+|+.++.. ++.+..-+....-.+++.-+|...|-+++...|.+..+.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 4566666666666655544 5555555555555556666666666666666666655444
No 416
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=49.53 E-value=2.3e+02 Score=30.18 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 247 (551)
.....-++..|.+.|-.+.+..+.+.+-..-. ...-|..-+..+.++|+...+..+
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i 460 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRI 460 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHH
Confidence 33444455555555555555555544333211 112233334444555554444333
No 417
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=48.96 E-value=2.4e+02 Score=26.66 Aligned_cols=76 Identities=13% Similarity=0.032 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCC-CHHHHHHHHHHHH----hcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC-------------
Q 048830 345 KALEVINTSSPS-DPVLWRTLLGSCK----IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK------------- 406 (551)
Q Consensus 345 ~A~~~~~~~~~~-~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 406 (551)
.|...+.++... +......|...|. ...|.++|...|+++-+.+. ......++ .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 455555553333 4444444443332 23467777777777777665 44444454 444444
Q ss_pred --ChhHHHHHHHHHHhCCC
Q 048830 407 --DEEGVARTRKLIKSNGI 423 (551)
Q Consensus 407 --~~~~a~~~~~~m~~~g~ 423 (551)
+...|...+......+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 56666666666655544
No 418
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.75 E-value=1.1e+02 Score=22.96 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=23.5
Q ss_pred hCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHH
Q 048830 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174 (551)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 174 (551)
..|+.+.|+++++.++ +....|...+.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 6666666666666666654443
No 419
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=48.29 E-value=79 Score=26.03 Aligned_cols=37 Identities=8% Similarity=-0.108 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcch
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 394 (551)
.....-|.-++.+.++++.+....+.+++.+|+|+.+
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3334456667788889999999999999999987643
No 420
>PRK10941 hypothetical protein; Provisional
Probab=48.10 E-value=88 Score=29.41 Aligned_cols=65 Identities=12% Similarity=-0.048 Sum_probs=50.5
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
.|-.+|.+.++++.|+...+..+.. ++.-+.--.-.|.+.|....|..-++..++..|++|.+-.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3556677888888888877763332 7777887888889999999999999999999998876543
No 421
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=47.72 E-value=3.3e+02 Score=27.98 Aligned_cols=390 Identities=10% Similarity=0.035 Sum_probs=192.3
Q ss_pred cCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHH-HHHcCCChhHHHHHHHHHHHcCCCCCChh
Q 048830 15 ARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIR-AFAQSLSPLQAIFYYNHMLMASLSRPDTF 90 (551)
Q Consensus 15 g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~~~pd~~ 90 (551)
.+..|+..|...+..+-+. +.+.+...+|.+|. +.++..|-.-.. -|-.+-+++.|..+|.+-++.. ||..
T Consensus 100 rf~~D~~lW~~yi~f~kk~--~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n---pdsp 174 (568)
T KOG2396|consen 100 RFNGDVKLWLSYIAFCKKK--KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN---PDSP 174 (568)
T ss_pred hcCCCHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC---CCCh
Confidence 4567999999999988888 88999999999885 335556654433 3444455889999998887766 3332
Q ss_pred -hHH---HHHHHH-hcc-----------CChHHHHHHH--HHHHHhCCCCChhH--HHH-H--HHHHHhCCCHHHH-HHH
Q 048830 91 -TFT---FTLKAC-ERV-----------KALNKCQELH--GFVIRSGYERCVVV--STN-L--MRGYAANGVIEAA-RSV 146 (551)
Q Consensus 91 -~~~---~ll~~~-~~~-----------~~~~~a~~~~--~~~~~~g~~~~~~~--~~~-l--i~~y~~~g~~~~A-~~~ 146 (551)
.|. -+--.+ .+. ++.+ .++- +..... ..++... ++. . .+...+.....+- ..+
T Consensus 175 ~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~--~eie~ge~~~~~-~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i 251 (568)
T KOG2396|consen 175 KLWKEYFRMELMYAEKLRNRREELGLDSSDKD--EEIERGELAWIN-YANSVDIIKGAVKSVELSVAEKFDFLKELQKNI 251 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHh-hccchhhhhcchhhcchHHHHHHHHHHHHHHHH
Confidence 211 111111 110 1110 1110 000001 1111111 110 0 1111111111111 112
Q ss_pred hccCCC---CChhHHHHHHHHH-------------------HhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcC
Q 048830 147 FDNMPE---RDLVSWNSIISCY-------------------TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204 (551)
Q Consensus 147 ~~~m~~---~~~~~~~~li~~~-------------------~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 204 (551)
.+.+.. .++.+|.-+..-. --.-+.+....+|++..+. -|+...+...|..|-..-
T Consensus 252 ~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~ 329 (568)
T KOG2396|consen 252 IDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERF 329 (568)
T ss_pred HHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHH
Confidence 222221 2333443332211 1111223344555555432 345555555666654322
Q ss_pred ------ChHHHHHHHHHHHHh-CCCC-chhHHHHHHHHHHhcCCHHH-HHHHHHhcCCCCHhHHHHHHHHHHhcC-ChH-
Q 048830 205 ------ALNMGIFLHRIACEM-GFVE-SVYVGNALVDMYAKCGNLDS-AFCVFSRMRKRDVLSWNSMIVGYGVHG-RGD- 273 (551)
Q Consensus 205 ------~~~~a~~~~~~~~~~-g~~~-~~~~~~~li~~y~~~g~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~- 273 (551)
.+.....+++...+. +..+ ....|..+.-++.+.....+ |..+-.+....+...|-.-+....+.. +.+
T Consensus 330 ~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~ 409 (568)
T KOG2396|consen 330 TFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQM 409 (568)
T ss_pred HhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHH
Confidence 233444455555443 2233 35566667767766665443 444444555667777766555544321 211
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHH-HHHhccCCHHHHHHHHHHhHHhcCCCCCccch-hhhhHHHhhcCCHHHHHHHHh
Q 048830 274 EAISFFKQMLMAGFHPDSITFLGLL-CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY-GCLVDLYGRAGKLEKALEVIN 351 (551)
Q Consensus 274 ~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~ 351 (551)
.-.++|......-..+-...+++.. .........+.....+.. -..|+..++ +.+++-+.+.|-..+|...+.
T Consensus 410 ~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s-----~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~ 484 (568)
T KOG2396|consen 410 LFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLS-----VIGADSVTLKSKYLDWAYESGGYKKARKVYK 484 (568)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHH-----hcCCceeehhHHHHHHHHHhcchHHHHHHHH
Confidence 1222333333321222223333332 001111111111222222 234554443 467788888899999998887
Q ss_pred h--cCCC-CHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 352 T--SSPS-DPVLWRTLLGSC--KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 352 ~--~~~~-~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+ .+|. +...+..++..- ...-+..-+...|+.+..--..++..|......-...|+.+.+-.++.++.
T Consensus 485 ~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 485 SLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 6 1333 777777777432 223347778888888887655778888877777677888887777665543
No 422
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.74 E-value=2.8e+02 Score=26.59 Aligned_cols=96 Identities=17% Similarity=0.028 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHhHHhcCC---CCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHH
Q 048830 306 LVEEGVEYFHMMVSRYNL---KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIA 380 (551)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~ 380 (551)
-.+.|.+.|+.......- ..++.....+.....+.|..++-..+++. ... +......++.+.....+.+....+
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~-~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWEL-YKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHH-HHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHH-HhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 467788888888763111 33455566677777788886665566555 333 777788899999999999999999
Q ss_pred HHHHHhhc-CCCcchHHHHHHHh
Q 048830 381 MKNLVQLE-AASAGDYVLLATIY 402 (551)
Q Consensus 381 ~~~~~~~~-p~~~~~~~~l~~~~ 402 (551)
++.++.-+ -.....+..+..+.
T Consensus 224 l~~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 224 LDLLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp HHHHHCTSTS-TTTHHHHHHHHH
T ss_pred HHHHcCCcccccHHHHHHHHHHh
Confidence 99988843 22333444444443
No 423
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=45.47 E-value=3e+02 Score=26.82 Aligned_cols=91 Identities=15% Similarity=0.077 Sum_probs=57.7
Q ss_pred HHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHH-HHHHHHHhhhCCcccCHHHHHHHHHHHHhcCCh
Q 048830 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE-ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206 (551)
Q Consensus 128 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 206 (551)
..+.+.++|.++-+.+..+-+.+..-......++..++-...-.+. +..+++..... ||..+...++++.+.....
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 4567788888887777666666665344445556655544444443 33344444433 8888888888888887777
Q ss_pred HHHHHHHHHHHHhCC
Q 048830 207 NMGIFLHRIACEMGF 221 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~ 221 (551)
......+..+.+...
T Consensus 247 ~~~~~~i~~~L~~~~ 261 (340)
T PF12069_consen 247 DLVAILIDALLQSPR 261 (340)
T ss_pred hHHHHHHHHHhcCcc
Confidence 666665666666543
No 424
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.06 E-value=2.2e+02 Score=29.69 Aligned_cols=101 Identities=20% Similarity=0.225 Sum_probs=0.0
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC------------ccchhhhhHHHhhcCCHHHHHHHHhh----------------
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKPG------------IKHYGCLVDLYGRAGKLEKALEVINT---------------- 352 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~---------------- 352 (551)
+.+...++++...|...+. -..|+ +.+.-.+.+++-.+|+.+.|.+++++
T Consensus 248 ~~hs~sYeqaq~~F~~av~--~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~ 325 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVI--VHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPF 325 (665)
T ss_pred eecchHHHHHHHHHHHHHh--hcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccc
Q ss_pred ----cCCC----CHHHHHHHH---HHHHhcCcHHHHHHHHHHHHhhcCC-CcchHHHHHHHhh
Q 048830 353 ----SSPS----DPVLWRTLL---GSCKIHRNVEIGEIAMKNLVQLEAA-SAGDYVLLATIYA 403 (551)
Q Consensus 353 ----~~~~----~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~ 403 (551)
-++. |...|-+|- ..+.+.|-+..|.+..+-+++++|. ||-....+++.|+
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
No 425
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.76 E-value=90 Score=27.53 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=17.5
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 048830 87 PDTFTFTFTLKACERVKALNKCQELHGFVIR 117 (551)
Q Consensus 87 pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (551)
|+...|..++.++...|+.++|.+...++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555555555555544
No 426
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.24 E-value=1.6e+02 Score=23.99 Aligned_cols=40 Identities=10% Similarity=-0.070 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhc--CCCcchHHHHHHHhhhcCChhHHHHHHH
Q 048830 377 GEIAMKNLVQLE--AASAGDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 377 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
...+|+.|...+ ..-+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556777777644 4456778888888999999999988875
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.23 E-value=47 Score=31.40 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 298 (551)
-|+..|..-.+.||+++|+.++++..+.|+.--..||..-+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888899999999999999999988765556654433
No 428
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=43.21 E-value=2.2e+02 Score=27.69 Aligned_cols=52 Identities=17% Similarity=0.054 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhcCC---CcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 374 VEIGEIAMKNLVQLEAA---SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
.++....+..+++.-|+ -+..|.+++.+....|.+++++.+|+++...|..|
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqP 173 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQP 173 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCh
Confidence 44555566666655554 24567788888888888888888888887777765
No 429
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=42.94 E-value=58 Score=32.84 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=59.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH-HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHhhc
Q 048830 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITF-LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRA 340 (551)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 340 (551)
...+...+.++.|+.++.+.++. .||-..| ..-..++.+.+++..|..=+..+.+ ..|+ ...|--=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhH
Confidence 34556678899999999999984 7766544 3334788889999888877766654 3353 44444445555666
Q ss_pred CCHHHHHHHHhh
Q 048830 341 GKLEKALEVINT 352 (551)
Q Consensus 341 g~~~~A~~~~~~ 352 (551)
+.+.+|...|+.
T Consensus 86 ~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 86 GEFKKALLDLEK 97 (476)
T ss_pred HHHHHHHHHHHH
Confidence 777888777776
No 430
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.84 E-value=1.1e+02 Score=24.88 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 274 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
+..+-+..+....+.|+....-.-+.+|.+.+++..|.++|+-+..+ ..+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 44455566666678899998999999999999999999999988654 3333334555443
No 431
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.29 E-value=3.1e+02 Score=26.27 Aligned_cols=82 Identities=11% Similarity=0.211 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh----------cCCHHH
Q 048830 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR----------AGKLEK 345 (551)
Q Consensus 276 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 345 (551)
.++|+.|.+.++.|.-..|.-+.-.+++.=.+.....+++.+..+ ..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467777777888888877777766677777777788888877643 2224445544442 466766
Q ss_pred HHHHHhhcCCC-CHHHHHHH
Q 048830 346 ALEVINTSSPS-DPVLWRTL 364 (551)
Q Consensus 346 A~~~~~~~~~~-~~~~~~~l 364 (551)
-.++++. -|. |....-++
T Consensus 337 nmkLLQ~-yp~tdi~~~l~~ 355 (370)
T KOG4567|consen 337 NMKLLQN-YPTTDISKMLAV 355 (370)
T ss_pred HHHHHhc-CCCCCHHHHHHH
Confidence 7777766 554 54444333
No 432
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=42.00 E-value=33 Score=32.33 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=36.5
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCCCH
Q 048830 302 SHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPSDP 358 (551)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 358 (551)
.+.|+.++|..+|+... .+.|+ +....-+....-...++-+|-+.|-+++..++
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 57899999999999886 45663 44444444444455667777777777665533
No 433
>PF15469 Sec5: Exocyst complex component Sec5
Probab=41.82 E-value=2.4e+02 Score=24.59 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=14.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHH
Q 048830 296 GLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 296 ~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
.-|.-|...|+++.+...|..+..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 344555666777777666666643
No 434
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=41.62 E-value=2.1e+02 Score=23.96 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=31.8
Q ss_pred CHhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 048830 255 DVLSWNSMIVGYGVHGR-GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 304 (551)
+..+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44566666666655444 334566677777666677777777777776654
No 435
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=41.34 E-value=3.9e+02 Score=27.02 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhh
Q 048830 158 WNSIISCYTQASFHLEALKLYERMR 182 (551)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~ 182 (551)
...+|.-|...|+..+..+.++++-
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DLn 372 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDLN 372 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHcC
Confidence 3567788888888888887777553
No 436
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=41.31 E-value=32 Score=32.52 Aligned_cols=30 Identities=10% Similarity=0.038 Sum_probs=21.2
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHHH
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 397 (551)
+..+++++.+..++.+.++++|++|..|..
T Consensus 152 ~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 152 LFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred hhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 445677777777777777777777776653
No 437
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.84 E-value=1e+02 Score=19.96 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=23.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 299 (551)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456677777777777777777766666665553
No 438
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=39.63 E-value=4.2e+02 Score=26.80 Aligned_cols=122 Identities=12% Similarity=0.031 Sum_probs=59.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 223 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
++..+-..-+.++++.+..+..-.+-.-....|...-..-+.+....|. .+|......... .|+......+.....
T Consensus 159 ~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~la 234 (410)
T TIGR02270 159 EDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLA 234 (410)
T ss_pred CCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHH
Confidence 3444444445555555544333333333334555555555666666666 555555444332 222222222222222
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC
Q 048830 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356 (551)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 356 (551)
..|. +++...+..+.++ +. +-...+.++++.|+...+.-+++. |..
T Consensus 235 l~~~-~~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~-l~d 280 (410)
T TIGR02270 235 VAGG-PDAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEA-MRE 280 (410)
T ss_pred hCCc-hhHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHH-hcC
Confidence 2232 3556655555443 22 445667777777777766666665 553
No 439
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.30 E-value=98 Score=32.57 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=61.5
Q ss_pred hhcCCHHHHHHHHhhcCCC---C------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCCh
Q 048830 338 GRAGKLEKALEVINTSSPS---D------PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~---~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 408 (551)
.+..++..+.++|...|.. | ......|--+|....+.|.|.++++++-+.+|.++-.-.....+....|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 3456677777777654433 1 233455566677788899999999999888888888888888888888888
Q ss_pred hHHHHHHHHHHh
Q 048830 409 EGVARTRKLIKS 420 (551)
Q Consensus 409 ~~a~~~~~~m~~ 420 (551)
++|.......+.
T Consensus 445 e~AL~~~~~~~s 456 (872)
T KOG4814|consen 445 EEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHh
Confidence 888888776654
No 440
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.15 E-value=6.6e+02 Score=29.00 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=59.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHH
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK-PG-IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSC 368 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~ 368 (551)
|..+++-+-+.+..|.+.++-..+++..+.. |+ ..+++++.+-....|.+-+|.+.+-+ .|. -......|+..+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-npdserrrdcLRqlvivL 1064 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-NPDSERRRDCLRQLVIVL 1064 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-CCcHHHHHHHHHHHHHHH
Confidence 4455555556666666666655555432211 11 34455666666667777777766665 444 333444455554
Q ss_pred HhcCcHHH------------HHH-HHHHHHhhcCC-CcchHHHHHHHhhhcCChhHHHHH
Q 048830 369 KIHRNVEI------------GEI-AMKNLVQLEAA-SAGDYVLLATIYACTKDEEGVART 414 (551)
Q Consensus 369 ~~~g~~~~------------a~~-~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~ 414 (551)
...|.++. .+. +++..-+..|. .+..|..|-..+...++|.+|..+
T Consensus 1065 fecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1065 FECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 44444332 222 22222222222 233455555555666666666553
No 441
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.73 E-value=3.6e+02 Score=25.83 Aligned_cols=78 Identities=5% Similarity=-0.087 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCC----CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 207 NMGIFLHRIACEMGF----VESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-RDVLSWNSMIVGYGVHGRGDEAISFFKQ 281 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (551)
+.+.+.+......+. ..++.....+.....+.|..+.-..+++.... ++......++.+++...+.+....+++.
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~ 226 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDL 226 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHH
Confidence 445555555544311 22334444445555555554444444444332 3444455555555555555555555555
Q ss_pred HHH
Q 048830 282 MLM 284 (551)
Q Consensus 282 m~~ 284 (551)
...
T Consensus 227 ~l~ 229 (324)
T PF11838_consen 227 LLS 229 (324)
T ss_dssp HHC
T ss_pred HcC
Confidence 554
No 442
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.69 E-value=55 Score=31.00 Aligned_cols=43 Identities=19% Similarity=0.067 Sum_probs=32.4
Q ss_pred CChh-HHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHH
Q 048830 153 RDLV-SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195 (551)
Q Consensus 153 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 195 (551)
+|.. -||..|..-.+.|+.++|++++++..+.|+.--..||..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3444 467888989999999999999999988887555555543
No 443
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.05 E-value=52 Score=22.79 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=20.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
|..-.-.+|.+|.+.|++++|.++++++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444567888888888888888877764
No 444
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.46 E-value=3.3e+02 Score=25.02 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=35.6
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 048830 244 AFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292 (551)
Q Consensus 244 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 292 (551)
+..+|.-..+|.+.....|+..+ ..+++++|.+++.++.+.|..|...
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHH
Confidence 34455556667777777777654 4578999999999999999888664
No 445
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=37.38 E-value=3.9e+02 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=16.4
Q ss_pred HHHhcCChHHHHHHHHHHHHhCC
Q 048830 199 SCAHVGALNMGIFLHRIACEMGF 221 (551)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~g~ 221 (551)
.+.+.|..+.|..+++.+++.++
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHHc
Confidence 34567778888888887777654
No 446
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.08 E-value=4.4e+02 Score=26.35 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMRK------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
..+.-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3556678889999999999999998653 2344566667766777888877777766654
No 447
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.73 E-value=35 Score=25.06 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=36.9
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc---CCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 342 KLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE---AASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 342 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
.++.|.+.+++++.. -..|+.+.|...|++.++.- -.-|.. .......|++|.++.++|
T Consensus 4 ~~~~A~~~I~kaL~~------------dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~------~~~~~~~w~~ar~~~~Km 65 (79)
T cd02679 4 YYKQAFEEISKALRA------------DEWGDKEQALAHYRKGLRELEEGIAVPVP------SAGVGSQWERARRLQQKM 65 (79)
T ss_pred HHHHHHHHHHHHhhh------------hhcCCHHHHHHHHHHHHHHHHHHcCCCCC------cccccHHHHHHHHHHHHH
Confidence 355666666653332 23477888888888877631 000111 234556799999999998
Q ss_pred Hh
Q 048830 419 KS 420 (551)
Q Consensus 419 ~~ 420 (551)
+.
T Consensus 66 ~~ 67 (79)
T cd02679 66 KT 67 (79)
T ss_pred HH
Confidence 75
No 448
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=36.69 E-value=15 Score=24.29 Aligned_cols=9 Identities=44% Similarity=0.811 Sum_probs=8.4
Q ss_pred cCCCcCCCC
Q 048830 540 FRDGLCSCG 548 (551)
Q Consensus 540 f~~g~csc~ 548 (551)
|..|+|||+
T Consensus 14 fg~GsrsC~ 22 (56)
T KOG3506|consen 14 FGQGSRSCR 22 (56)
T ss_pred cCCCCccee
Confidence 999999996
No 449
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.29 E-value=1.5e+02 Score=23.28 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHh
Q 048830 160 SIISCYTQASFHLEALKLYERM 181 (551)
Q Consensus 160 ~li~~~~~~g~~~~A~~~~~~m 181 (551)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666655554
No 450
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.02 E-value=1.1e+02 Score=21.11 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=19.5
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 290 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
|..--..+|.++.+.|++++|.++.+.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444567777778888888777777654
No 451
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=34.90 E-value=11 Score=28.70 Aligned_cols=12 Identities=42% Similarity=1.173 Sum_probs=9.6
Q ss_pred ccCCCcCCCCCC
Q 048830 539 HFRDGLCSCGDY 550 (551)
Q Consensus 539 ~f~~g~csc~~~ 550 (551)
..+.|-|||.||
T Consensus 46 Il~~gfCSCp~~ 57 (117)
T COG5431 46 ILEGGFCSCPDF 57 (117)
T ss_pred EEEcCcccCHHH
Confidence 456789999986
No 452
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.91 E-value=5e+02 Score=26.10 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhccCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 048830 126 VSTNLMRGYAANGVIEAARSVFDNMPE-----------RDLVSWNSIISCYTQASFHLEALKLYERMR 182 (551)
Q Consensus 126 ~~~~li~~y~~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (551)
+...|++.++-.||+..|+++++.+.- -.+.++..+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888999999988877642 234566677778888888888888887653
No 453
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=33.77 E-value=2e+02 Score=21.42 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=30.8
Q ss_pred HhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHH
Q 048830 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275 (551)
Q Consensus 236 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 275 (551)
+...+.+.|.++++.++.+...+|.++..++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445678888888888888888888888888877765544
No 454
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.67 E-value=3.8e+02 Score=24.63 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=32.4
Q ss_pred HhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHH
Q 048830 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200 (551)
Q Consensus 146 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 200 (551)
+|+-..+|.+.....|+..+ ..+++++|.+.+.++.+.|..|... .+++.+++
T Consensus 230 VfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 34444456666666666654 3457888888888888888777544 23344443
No 455
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=33.64 E-value=1.4e+02 Score=27.88 Aligned_cols=58 Identities=12% Similarity=-0.021 Sum_probs=50.9
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 363 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.+=.++...++++.|....++.+.++|.+|.-..--+-+|.+.|...-|.+-++...+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3446788899999999999999999999998889999999999999999988877544
No 456
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.25 E-value=4.6e+02 Score=25.40 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=14.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
.......|++.|+-+.|.+.+....+
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444556666666666655555433
No 457
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=33.17 E-value=1.6e+02 Score=22.02 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHH
Q 048830 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174 (551)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 174 (551)
.++..+.+.|+-. ....-...+...+.+.|.++++.++.++..+|.....++-..|...-|
T Consensus 20 ~v~~~L~~~~Vlt----~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFT----PDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCC----HHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3555555555321 112222334455677788888888888888888887777776655444
No 458
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.86 E-value=4.6e+02 Score=25.35 Aligned_cols=114 Identities=10% Similarity=0.046 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh---cCCHHHHHHH
Q 048830 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR---AGKLEKALEV 349 (551)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~ 349 (551)
+.-+.++++..+.. +-+......++..+.+..+.++..+-++.+...+ +-+...|...++.... .-.+++..++
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 34445555555542 2233444455555555555666566666665431 1134444444443322 1234444444
Q ss_pred HhhcCCC---------------------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcC
Q 048830 350 INTSSPS---------------------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 350 ~~~~~~~---------------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 389 (551)
|.+++.. -..++..+...+...|..+.|..+++-+++++-
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 4332211 122333344556789999999999999999873
No 459
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.65 E-value=5.3e+02 Score=26.00 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=30.1
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 048830 259 WNSMIVGYGV---HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304 (551)
Q Consensus 259 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 304 (551)
+.-+++++.+ .++.+.|+.++..|.+.|..|....-..+..++-..
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 3334444443 478899999999999988877765555554444433
No 460
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.65 E-value=3.5e+02 Score=23.93 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=54.4
Q ss_pred ccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC------
Q 048830 148 DNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF------ 221 (551)
Q Consensus 148 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------ 221 (551)
++-+++..+.|.....+-++.-+.+++.+.|- ..+=.+++..|.+.-++.++.++++.+.+..+
T Consensus 100 kd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LK 169 (233)
T PF14669_consen 100 KDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLK 169 (233)
T ss_pred hcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 33333444555555555555544444433331 11224566778888888888888887766422
Q ss_pred --------CCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048830 222 --------VESVYVGNALVDMYAKCGNLDSAFCVFSR 250 (551)
Q Consensus 222 --------~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 250 (551)
.+--.+.|.-...+.++|.+|.|..++++
T Consensus 170 GL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 170 GLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred CccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 22234556666677777777777777764
No 461
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=32.58 E-value=2.1e+02 Score=23.79 Aligned_cols=44 Identities=9% Similarity=-0.048 Sum_probs=33.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 364 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
........|++..|..+.+.++..+|+|..+-...+++|...|.
T Consensus 76 ~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 76 RAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34445668999999999999999999999888888888776664
No 462
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=32.46 E-value=4.5e+02 Score=25.06 Aligned_cols=57 Identities=12% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
.+.....|..+|.+.+|.++-++...- +...|-.++..++..|+--.|..-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 345567888999999999998887753 556788899999999998888888888764
No 463
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.13 E-value=3.9e+02 Score=25.47 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHH
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGE 378 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~ 378 (551)
|+..|..+..||...|+.+.+.
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHHHH
Confidence 7777777777777777655543
No 464
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=32.07 E-value=8.2e+02 Score=27.96 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHhcC--CHHHHHHHHHhcCCCC
Q 048830 225 VYVGNALVDMYAKCG--NLDSAFCVFSRMRKRD 255 (551)
Q Consensus 225 ~~~~~~li~~y~~~g--~~~~A~~~~~~~~~~~ 255 (551)
......++.+|++.+ ++++|+....++.+.+
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~ 844 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREED 844 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcC
Confidence 344566778888887 7888888887777553
No 465
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.67 E-value=5.8e+02 Score=26.69 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=11.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHh
Q 048830 160 SIISCYTQASFHLEALKLYERM 181 (551)
Q Consensus 160 ~li~~~~~~g~~~~A~~~~~~m 181 (551)
.++.-|.+.++.++|+.++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 3444555555555555555555
No 466
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=31.50 E-value=6.6e+02 Score=26.68 Aligned_cols=229 Identities=12% Similarity=0.046 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 048830 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD-LVSWNSIISCYTQASFHLEALKLYERMRF 183 (551)
Q Consensus 105 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (551)
.+...++.+.....--.+.+..+..|+... +.=+.+.-.++++++.. . ...|..++++....|-.....-+.+.+..
T Consensus 291 ~~~l~~L~~~~~~~~~~~~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 291 VEVLKHLVQDIASDVQEPAAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q ss_pred CCccc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCH------HHHHHHHH
Q 048830 184 EDVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV-------YVGNALVDMYAKCGNL------DSAFCVFS 249 (551)
Q Consensus 184 ~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~------~~A~~~~~ 249 (551)
..+.+ ........+-.....-..+-...+++.+......+.. ..+.+|+.-++..... ++....+.
T Consensus 369 ~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~ 448 (574)
T smart00638 369 KKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLH 448 (574)
T ss_pred CCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q ss_pred hcC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc--CCHHHHHHHHHHhHHhcC
Q 048830 250 RMR-----KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ--GLVEEGVEYFHMMVSRYN 322 (551)
Q Consensus 250 ~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~ 322 (551)
+.. +.|..--...|.++...|. ..++..+.........++...-...+.++.+. ...+.+..++-.......
T Consensus 449 ~~l~~~~~~~~~~~~~~~LkaLGN~g~-~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~ 527 (574)
T smart00638 449 ELLQQAVSKGDEEEIQLYLKALGNAGH-PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRA 527 (574)
T ss_pred HHHHHHHhcCCchheeeHHHhhhccCC-hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCC
Q ss_pred CCCCccchhhhhHH
Q 048830 323 LKPGIKHYGCLVDL 336 (551)
Q Consensus 323 ~~p~~~~~~~li~~ 336 (551)
..+.+.+-..++-+
T Consensus 528 e~~EvRiaA~~~lm 541 (574)
T smart00638 528 EPPEVRMAAVLVLM 541 (574)
T ss_pred CChHHHHHHHHHHH
No 467
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.49 E-value=2e+02 Score=30.59 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=60.9
Q ss_pred HHHHHHHcCCCCChHHHHHHHhcCCC------CChhhHHHHHHHHHcCCChh------HHHHHHHHHHHcCCCCCChhhH
Q 048830 25 WLLNSYAISVSSSLSYAQLLFNQIQN------PQTQAWNSLIRAFAQSLSPL------QAIFYYNHMLMASLSRPDTFTF 92 (551)
Q Consensus 25 ~li~~~~~~~~g~~~~A~~lf~~~~~------~~~~~~~~li~~~~~~g~~~------~A~~l~~~m~~~~~~~pd~~~~ 92 (551)
+|+.+|... |++-.+.++++.... .=...+|..|+.+.++|.++ .|-+++++.. +. -|..||
T Consensus 33 sl~eacv~n--~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln-~d~~t~ 106 (1117)
T COG5108 33 SLFEACVYN--GDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LN-GDSLTY 106 (1117)
T ss_pred HHHHHHHhc--chHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cC-CcchHH
Confidence 799999999 999999999987642 23567899999999999875 3444444443 32 688899
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHH
Q 048830 93 TFTLKACERVKALNKCQELHGFVIR 117 (551)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (551)
..++.+....-+-..++-++..++.
T Consensus 107 all~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 107 ALLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHHhhcChHhHHhccHHHHHHHH
Confidence 9988876654444444444444443
No 468
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.34 E-value=4.6e+02 Score=24.85 Aligned_cols=156 Identities=13% Similarity=0.044 Sum_probs=82.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhh-------HHHHHHHHhccCCHHHHHHHHHHhH---HhcCCCCCccchhhhh
Q 048830 265 GYGVHGRGDEAISFFKQMLMAGFHPDSIT-------FLGLLCGCSHQGLVEEGVEYFHMMV---SRYNLKPGIKHYGCLV 334 (551)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~p~~~~~~~li 334 (551)
-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...-.+...... ..+.-+....+...|+
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 34556777788888887777776665543 3345556666665443332222211 1111112333444444
Q ss_pred HHHhh-cCCHHHHHHHHhhcCCC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----hc--CCCcchHHHH
Q 048830 335 DLYGR-AGKLEKALEVINTSSPS---------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ----LE--AASAGDYVLL 398 (551)
Q Consensus 335 ~~~~~-~g~~~~A~~~~~~~~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l 398 (551)
+.+-. ...++.-+.+....++. -...-.-++..+.+.|.+.+|......++. .+ |+-...|..=
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllE 171 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLE 171 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhh
Confidence 44422 23344444443331111 112223456677778888888777666553 22 3345566666
Q ss_pred HHHhhhcCChhHHHHHHHHHHh
Q 048830 399 ATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
..+|-+-.+..++..-+...+-
T Consensus 172 SKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 172 SKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred HHHHHHHHhhhhhhhHHHHHHH
Confidence 7777777777777776666663
No 469
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.15 E-value=2.6e+02 Score=23.36 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=23.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 95 TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
++..+...++.-.|.++|+.+.+.+..-+..|.-.-++.+...|-
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 444455555556666666666665544444333334455555554
No 470
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.05 E-value=2.3e+02 Score=24.40 Aligned_cols=44 Identities=5% Similarity=-0.048 Sum_probs=19.7
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 048830 97 KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140 (551)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 140 (551)
..+....+.-.|.++++.+.+.+...+..|.---++.+.+.|-+
T Consensus 33 ~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 33 RLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33333344445555555555554443433333334444444443
No 471
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.81 E-value=3.8e+02 Score=23.73 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=25.8
Q ss_pred HhcCCHHHHHHHHHhcCC------CCHhHHHHHHH-HHHhcCC--hHHHHHHHHHHHH
Q 048830 236 AKCGNLDSAFCVFSRMRK------RDVLSWNSMIV-GYGVHGR--GDEAISFFKQMLM 284 (551)
Q Consensus 236 ~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~ 284 (551)
...|++++|..-++++.+ +-...|..+.. +++.++. +-+|..++.-...
T Consensus 40 ~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 40 LHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 344666666666665542 23344555544 5666654 4455555555444
No 472
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.76 E-value=7.9e+02 Score=27.40 Aligned_cols=218 Identities=15% Similarity=0.025 Sum_probs=111.2
Q ss_pred HHhCCCHHHHHHHhccCC----CCCh-------hHHHHHHHH-HHhcCChHHHHHHHHHhhhC----CcccCHHHHHHHH
Q 048830 134 YAANGVIEAARSVFDNMP----ERDL-------VSWNSIISC-YTQASFHLEALKLYERMRFE----DVGLDGFTLVCLL 197 (551)
Q Consensus 134 y~~~g~~~~A~~~~~~m~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----~~~p~~~t~~~ll 197 (551)
.....++++|..+..+.. .|+. ..|+++-.. ....|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677888887776543 2221 245555433 34567888888887765542 1234445566666
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHH---HHH--HHHHHhcCCH--HHHHHHHHhcCC-----C-----CHhHHH
Q 048830 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVG---NAL--VDMYAKCGNL--DSAFCVFSRMRK-----R-----DVLSWN 260 (551)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~l--i~~y~~~g~~--~~A~~~~~~~~~-----~-----~~~~~~ 260 (551)
.+..-.|++++|..+.....+..-..+...+ ..+ ...+...|+. ++....|..... . -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7777788888888888777665323333322 222 2234455632 233333333321 1 122333
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHhhH--HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCc-cchh---hh
Q 048830 261 SMIVGYGVH-GRGDEAISFFKQMLMAGFHPDSITF--LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI-KHYG---CL 333 (551)
Q Consensus 261 ~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~---~l 333 (551)
.+..++.+. +...++..-++--......|-...+ ..|+......|++++|...++++..- ...++. .-|. ..
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHH
Confidence 444444441 1122222222222222222222222 25666777889999998888888653 222321 1111 12
Q ss_pred h--HHHhhcCCHHHHHHHHhh
Q 048830 334 V--DLYGRAGKLEKALEVINT 352 (551)
Q Consensus 334 i--~~~~~~g~~~~A~~~~~~ 352 (551)
+ ......|+.++|.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 2 223457888777776655
No 473
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=30.36 E-value=4.3e+02 Score=24.18 Aligned_cols=105 Identities=16% Similarity=0.086 Sum_probs=54.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC-CCHh--hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcC
Q 048830 265 GYGVHGRGDEAISFFKQMLMAGFH-PDSI--TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341 (551)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~-p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 341 (551)
-....|+++.|+++.+-+++.|.. |+.+ ++-+++. |+....-....+. |-..++.....+...-...
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~~a-g~~~e~~~~~~~~~l~~~~- 161 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAASA-GESVEPYFLRVFLDLTTEW- 161 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHHHc-CCCCChHHHHHHHHHHhcC-
Confidence 346789999999999999998753 4431 2222221 2222222222121 3222332222222211111
Q ss_pred CHHHHHHHHhhcCCC--CHHHHHHHHHHHH---------hcCcHHHHHHHHHHHHhhcCC
Q 048830 342 KLEKALEVINTSSPS--DPVLWRTLLGSCK---------IHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 342 ~~~~A~~~~~~~~~~--~~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~p~ 390 (551)
. ||. ....|..+...+. ..++...|...++++++++|.
T Consensus 162 ----------d-mpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 162 ----------D-MPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred ----------C-CChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 1 443 3444555555552 345778899999999998876
No 474
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.87 E-value=55 Score=26.82 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh
Q 048830 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202 (551)
Q Consensus 169 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 202 (551)
|.-..|..+|.+|++.|-+|| .++.|+..+.+
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a~~ 140 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKEAKQ 140 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHHhcC
No 475
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.52 E-value=2.5e+02 Score=21.20 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=8.7
Q ss_pred HhccCCHHHHHHHHHHhH
Q 048830 301 CSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~ 318 (551)
....|..++|...+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 344455555555554443
No 476
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=29.17 E-value=3.2e+02 Score=25.88 Aligned_cols=84 Identities=11% Similarity=0.021 Sum_probs=47.5
Q ss_pred cchHHHHHHHhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEe-cCCCCCChHHHHHHHHHHHHHHHhcCc
Q 048830 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV-DDKSHPDADMIYRKLEEIMHRAKFIGY 470 (551)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~g~ 470 (551)
|.+|..|.--..+..-++--...+..|++.|+.|+ |+.+++....=+. -+..-...+...+.+.+-.+..++ .
T Consensus 139 PkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pd----mVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avre--v 212 (403)
T COG3867 139 PKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPD----MVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVRE--V 212 (403)
T ss_pred cHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCcc----ceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhh--c
Confidence 44554443333333334555667889999999885 7777765432222 111112555555666655555554 6
Q ss_pred cCCCccccccC
Q 048830 471 TKDESLVAVSG 481 (551)
Q Consensus 471 ~p~~~~~~~~~ 481 (551)
.|+....+|-.
T Consensus 213 ~p~ikv~lHla 223 (403)
T COG3867 213 SPTIKVALHLA 223 (403)
T ss_pred CCCceEEEEec
Confidence 67777777744
No 477
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.45 E-value=4.8e+02 Score=24.17 Aligned_cols=62 Identities=8% Similarity=-0.010 Sum_probs=41.0
Q ss_pred hhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 331 GCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
..+-+++...|++-++++.-.+.+.. |...|-.-..+-...=+.++|..-|.++++++|.-.
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 33445556667776666655443332 666665556666666678899999999999988643
No 478
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.31 E-value=2e+02 Score=22.26 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhc-CCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 377 GEIAMKNLVQLE-AASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 377 a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
-++-++++...+ +-.|+.+..|+-.|++.|+-|.|.+-|+.=+
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 334444544443 5567788889999999999999888887543
No 479
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=28.30 E-value=3.3e+02 Score=22.18 Aligned_cols=55 Identities=16% Similarity=0.001 Sum_probs=28.4
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC--C-HHHHHHHHHHHHhcCcHHHHHHHHH
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS--D-PVLWRTLLGSCKIHRNVEIGEIAMK 382 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~ll~~~~~~g~~~~a~~~~~ 382 (551)
..+-.++.-++.-.|..++|.++++. .+- + ...-..++..|....+.++...+-+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~-FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~ 123 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSK-FKWGHTFLELNKELLEAYAKCKTSEEVIEIQN 123 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34445555566666666666666665 444 1 1122235555665555555444433
No 480
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.92 E-value=6.3e+02 Score=25.33 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhccCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 048830 126 VSTNLMRGYAANGVIEAARSVFDNMPE------RDLVSWNSIISCYTQASFHLEALKLYERMRF 183 (551)
Q Consensus 126 ~~~~li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (551)
.+.-+.+.|..+|+++.|.+.|.+... ..+..|-.+|..-.-.|+|.....+-.+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 466788889999999999999988653 2234566667766777888877777766654
No 481
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.80 E-value=1.3e+02 Score=32.03 Aligned_cols=94 Identities=9% Similarity=0.001 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 048830 53 TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR 132 (551)
Q Consensus 53 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 132 (551)
...|-.-+..+...++.. ....+.++..-+. .+.....-++..|.+.|-.+.+..+...+-..-. ...-|..-+.
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~-~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPL-DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 334555555555443322 4455555544443 5666677788888888888888877776644322 1234556667
Q ss_pred HHHhCCCHHHHHHHhccCC
Q 048830 133 GYAANGVIEAARSVFDNMP 151 (551)
Q Consensus 133 ~y~~~g~~~~A~~~~~~m~ 151 (551)
.+.++|+......+-+.+.
T Consensus 447 ~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHH----------------
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 7778888766665554443
No 482
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.67 E-value=2.9e+02 Score=26.30 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 048830 129 NLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRF 183 (551)
Q Consensus 129 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (551)
.++..+.+..++....+.+..+. .+..-...+..+...|++..|+++..+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34555666666666555555553 333344566777788899998888877654
No 483
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.66 E-value=3.1e+02 Score=22.91 Aligned_cols=45 Identities=11% Similarity=-0.045 Sum_probs=23.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC
Q 048830 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305 (551)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 305 (551)
.++..+.+.++.-.|.++++++.+.+...+..|....|..+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344445555555566666666666554444455444444444444
No 484
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=27.56 E-value=1.3e+02 Score=28.60 Aligned_cols=64 Identities=8% Similarity=-0.042 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH-HHHHhhhcCChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL-LATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
|+..|...+..-.+.|-+.+...++.++++..|.|...|.. -..-|...++++.++.+|..-.+
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR 170 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR 170 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc
Confidence 89999999988888889999999999999999999988875 44557778899999888865544
No 485
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.52 E-value=99 Score=21.75 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=25.1
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh
Q 048830 51 PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100 (551)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~ 100 (551)
|....++.++..+++..-.++++..+.+....|. .+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~--I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS--IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHH
Confidence 3444555555555555555666666666666554 34445544444443
No 486
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.01 E-value=3.4e+02 Score=21.97 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048830 208 MGIFLHRIACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSR 250 (551)
Q Consensus 208 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~ 250 (551)
.+..+|..|...|+-.. ...|..-...+.+.|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66667777776665433 44566666667777777777777653
No 487
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=26.93 E-value=6.3e+02 Score=25.00 Aligned_cols=53 Identities=13% Similarity=0.104 Sum_probs=22.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh-ccCCHHHHHHHHHH
Q 048830 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS-HQGLVEEGVEYFHM 316 (551)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~ 316 (551)
..+.+.|-+..|+++-+-+......-|......+|..|+ +++.++--+++.+.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 344555555555555555554332223333333333332 33444444444443
No 488
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.82 E-value=2.7e+02 Score=24.00 Aligned_cols=36 Identities=6% Similarity=-0.036 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCC
Q 048830 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342 (551)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 342 (551)
..-.|.++++.+.+. +...+..|..--++.+...|-
T Consensus 40 ~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 40 GAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCC
Confidence 333444555544333 333333333333444444444
No 489
>PF03508 Connexin43: Gap junction alpha-1 protein (Cx43); InterPro: IPR013124 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. Gap junction alpha-1 protein (also called connexin43, or Cx43) is a connexin of 381 amino acid residues (human isoform) that is widely expressed in several organs and cell types, and is the principal gap junction protein of the heart. Characterisation of genetically-engineered mice that lack Cx43, and also of human patients that have spontaneously-occurring mutations in the gene encoding it (GJA1), suggest Cx43 is essential for the development of normal cardiac architecture and ventricular conduction. Mice lacking Cx43 survive to term but die shortly after birth. They have cardiac malformations that lead to the obstruction of the pulmonary artery, leading to neonatal cyanosis, and subsequent death. This phenotype is reminiscent of some forms of stenosis of the pulmonary artery. Human subjects with visceroatrial heterotaxia (a heart disorder characterised by arterial defects), have been found to have points mutations in the Cx43-encoding gene, as a result of which a potential phosphorylation site within the C terminus is disrupted. Consequently, although these mutant Cx43 molecules still form functional gap junction channels, their response to protein kinase activation is impaired. This domain is found in the C-terminal region of these proteins.; PDB: 1R5S_A.
Probab=26.50 E-value=30 Score=17.20 Aligned_cols=7 Identities=43% Similarity=0.933 Sum_probs=3.5
Q ss_pred cCCCCCC
Q 048830 544 LCSCGDY 550 (551)
Q Consensus 544 ~csc~~~ 550 (551)
.-||++|
T Consensus 3 ~~scrny 9 (20)
T PF03508_consen 3 TNSCRNY 9 (20)
T ss_dssp S-SSSS-
T ss_pred cchhhhh
Confidence 4478776
No 490
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.11 E-value=4.2e+02 Score=24.47 Aligned_cols=21 Identities=19% Similarity=-0.062 Sum_probs=11.4
Q ss_pred HHHHHHHhhhcCChhHHHHHH
Q 048830 395 YVLLATIYACTKDEEGVARTR 415 (551)
Q Consensus 395 ~~~l~~~~~~~g~~~~a~~~~ 415 (551)
...+..++...|+.++...+-
T Consensus 221 l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 221 LWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 344555556666666555543
No 491
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.03 E-value=3.1e+02 Score=29.28 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=40.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCCHH------HHHHHhccCC-CCChhHHHHHHHH
Q 048830 94 FTLKACERVKALNKCQELHGFVIRSG--YERCVVVSTNLMRGYAANGVIE------AARSVFDNMP-ERDLVSWNSIISC 164 (551)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~------~A~~~~~~m~-~~~~~~~~~li~~ 164 (551)
+++.+|...|++..+.++++.+.... -..=...+|..++-..+.|.++ .|.+++++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 67888888888888888887776532 1112334555666666666543 2333333322 2345555555544
Q ss_pred H
Q 048830 165 Y 165 (551)
Q Consensus 165 ~ 165 (551)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 492
>PF13934 ELYS: Nuclear pore complex assembly
Probab=25.89 E-value=5.1e+02 Score=23.59 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=48.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHH
Q 048830 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEK 345 (551)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 345 (551)
..++++++|++++-.- .+.|+... -++.++...|+.+.|..+++... -.+ +......++.. ..++.+.+
T Consensus 89 LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~----p~l~s~~~~~~~~~~-La~~~v~E 158 (226)
T PF13934_consen 89 LDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG----PPLSSPEALTLYFVA-LANGLVTE 158 (226)
T ss_pred hChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC----CCCCCHHHHHHHHHH-HHcCCHHH
Confidence 3455666666665221 12222211 35566666677777777776541 111 22222333333 55577777
Q ss_pred HHHHHhhcCCC--CHHHHHHHHHHHHhc
Q 048830 346 ALEVINTSSPS--DPVLWRTLLGSCKIH 371 (551)
Q Consensus 346 A~~~~~~~~~~--~~~~~~~ll~~~~~~ 371 (551)
|..+.+. .+. ....|..++..|...
T Consensus 159 Af~~~R~-~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 159 AFSFQRS-YPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHHHHh-CchhhhHHHHHHHHHHHHHH
Confidence 7777776 443 334666666665543
No 493
>PF00322 Endothelin: Endothelin family; InterPro: IPR001928 Endothelins (ET's) are the most potent vasoconstrictors known [, , ]. They stimulate cardiac contraction, regulate release of vasoactive substances, and stimulate mitogenesis in blood vessels in primary culture. They also stimulate contraction in almost all other smooth muscles (e.g., uterus, bronchus, vas deferensa and stomach) and stimulate secretion in several tissues (e.g., kidney, liver and adrenals). Endothelin receptors have also been found in the brain, e.g. cerebral cortex, cerebellum and glial cells. Endothelins have been implicated in a variety of pathophysiological conditions associated with stress, including hypertension, myocardial infarction, subarachnoid haemorrhage and renal failure. Endothelins are synthesised by proteolysis of large preproendothelins, which are cleaved to 'big endothelins' before being processed to the mature peptide. Sarafotoxins (SRTX) and bibrotoxin (BTX) are cardiotoxins from the venom of snakes of the Atractaspis family, structurally and functionally [, ] similar to endothelin. As shown in the following schematic representation, these peptides which are 21 residues long contain two intramolecular disulphide bonds. +-------------+ | | CxCxxxxxxxCxxxCxxxxxx | | +-------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0019229 regulation of vasoconstriction, 0005576 extracellular region; PDB: 1V6R_A 1T7H_A 1EDP_A 1EDN_A 3CMH_A 6CMH_A 1SRB_A 2LDF_A.
Probab=25.80 E-value=28 Score=20.03 Aligned_cols=8 Identities=38% Similarity=1.103 Sum_probs=4.9
Q ss_pred CcCCCCCC
Q 048830 543 GLCSCGDY 550 (551)
Q Consensus 543 g~csc~~~ 550 (551)
+.|||.++
T Consensus 4 pRCsC~s~ 11 (31)
T PF00322_consen 4 PRCSCASW 11 (31)
T ss_dssp --ECCSSS
T ss_pred cceecCCC
Confidence 57999875
No 494
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.80 E-value=5.5e+02 Score=23.96 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=40.9
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh
Q 048830 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202 (551)
Q Consensus 123 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 202 (551)
|+.....+...|.+.|++.+|+.-|-.-..++...+-.++......|...++ |...-..++ -|..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHH
Confidence 5667777888888888888888777554444443333334333333433333 111111222 2444
Q ss_pred cCChHHHHHHHHHHHH
Q 048830 203 VGALNMGIFLHRIACE 218 (551)
Q Consensus 203 ~~~~~~a~~~~~~~~~ 218 (551)
.+++..|...+....+
T Consensus 154 l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 154 LGNLRDANELFDTFTS 169 (260)
T ss_dssp TTBHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5666666666555444
No 495
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=25.79 E-value=5.6e+02 Score=24.05 Aligned_cols=111 Identities=18% Similarity=0.123 Sum_probs=48.5
Q ss_pred HHHHHHHhccCCCCC-hhHHHHHHHHHHh----cCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhc-----C--ChH
Q 048830 140 IEAARSVFDNMPERD-LVSWNSIISCYTQ----ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV-----G--ALN 207 (551)
Q Consensus 140 ~~~A~~~~~~m~~~~-~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-----~--~~~ 207 (551)
...|...|....+.. ......|...|.. ..+..+|...|.+..+.|..+-..+...+...+... - +..
T Consensus 93 ~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~ 172 (292)
T COG0790 93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDK 172 (292)
T ss_pred HHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHH
Confidence 445555555443322 2223333333333 225566666666666665433211222222222221 0 122
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC
Q 048830 208 MGIFLHRIACEMGFVESVYVGNALVDMYAK----CGNLDSAFCVFSRMRK 253 (551)
Q Consensus 208 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~ 253 (551)
.|...+..+-..+ +......|..+|.. ..+..+|...|....+
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 4555555555544 33333444444433 2355666666665543
No 496
>PRK14700 recombination factor protein RarA; Provisional
Probab=24.80 E-value=6.2e+02 Score=24.22 Aligned_cols=105 Identities=10% Similarity=-0.031 Sum_probs=59.9
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccC-C--CCChhHHHHHHH
Q 048830 87 PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM-P--ERDLVSWNSIIS 163 (551)
Q Consensus 87 pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m-~--~~~~~~~~~li~ 163 (551)
.+......++.. ..||...|+..++.+.......+... + ..+...++..+- . .++-..+.-+|+
T Consensus 65 i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~~~----i-------t~~~~~~~~~~~~~~yDk~gd~HYd~iS 131 (300)
T PRK14700 65 IDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDEIY----L-------NKELFDQAVGETSRDFHREGKEFYEQLS 131 (300)
T ss_pred cCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCCCc----c-------CHHHHHHHHhHHHhcccCCcchhHHHHH
Confidence 455555555544 35788888888877553210111000 0 011222222111 1 133344455678
Q ss_pred HHHhc---CChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcC
Q 048830 164 CYTQA---SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204 (551)
Q Consensus 164 ~~~~~---g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 204 (551)
++.|+ .+++.|+-.+.+|.+.|-.|....-..++-+.-..|
T Consensus 132 Af~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 132 AFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred HHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 87665 789999999999999998887776666666665555
No 497
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.34 E-value=1.7e+02 Score=27.08 Aligned_cols=19 Identities=16% Similarity=0.210 Sum_probs=10.1
Q ss_pred HHHHHcCCChhHHHHHHHH
Q 048830 60 IRAFAQSLSPLQAIFYYNH 78 (551)
Q Consensus 60 i~~~~~~g~~~~A~~l~~~ 78 (551)
+++|...|++.+|+.-|+.
T Consensus 17 ~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3555555555555555544
No 498
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.30 E-value=6.6e+02 Score=24.37 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 227 VGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 227 ~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
.+-....-|++-|+.+.|.+.+.+.-
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44445556666666666666666543
No 499
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=24.11 E-value=3.2e+02 Score=20.56 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccC
Q 048830 87 PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150 (551)
Q Consensus 87 pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 150 (551)
|....|...++.-.....-+. ++|+.....|+..|+.+|..+++...-+=..+...++++.|
T Consensus 8 ~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred ChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 500
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.97 E-value=7.3e+02 Score=24.74 Aligned_cols=55 Identities=7% Similarity=-0.031 Sum_probs=33.1
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChh--hHHHHHHHHh--ccCChHHHHHHHHHHHHh
Q 048830 62 AFAQSLSPLQAIFYYNHMLMASLSRPDTF--TFTFTLKACE--RVKALNKCQELHGFVIRS 118 (551)
Q Consensus 62 ~~~~~g~~~~A~~l~~~m~~~~~~~pd~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 118 (551)
.+.+.+++..|.++|+.+... +. ++.. .+..+..+|. ..-++++|.+.++...+.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~-~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LP-GREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CC-chhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344777888888888888775 42 3333 2334444433 345677777777766554
Done!