Query 048830
Match_columns 551
No_of_seqs 672 out of 3963
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 00:30:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.9E-37 2.4E-41 324.6 35.5 398 15-421 112-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4E-35 1.4E-39 311.1 33.6 380 16-404 146-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.6E-28 3.3E-32 240.2 39.3 371 27-407 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 7.4E-27 2.5E-31 233.7 37.5 352 59-420 5-367 (388)
5 4g26_A Pentatricopeptide repea 100.0 8.9E-29 3E-33 253.1 20.8 211 71-304 8-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.7E-28 5.8E-33 251.0 22.6 197 143-340 9-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 8.1E-24 2.8E-28 219.5 32.9 392 20-421 6-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.4E-23 4.6E-28 214.2 33.9 335 51-417 24-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 2.8E-23 9.5E-28 215.5 29.6 374 17-398 36-489 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 7.5E-22 2.6E-26 201.2 33.2 362 18-410 24-443 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.3E-21 4.4E-26 204.3 31.8 387 20-422 25-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 8.4E-21 2.9E-25 198.0 30.4 366 17-396 56-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.4E-19 4.8E-24 178.0 31.0 325 52-405 2-353 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 7.7E-19 2.6E-23 172.7 32.4 303 89-421 3-335 (359)
15 1b89_A Protein (clathrin heavy 99.9 5.5E-20 1.9E-24 179.7 23.1 287 32-352 15-307 (449)
16 3hym_B Cell division cycle pro 99.8 4.8E-19 1.6E-23 172.2 25.4 283 123-408 21-321 (330)
17 2xm6_A Protein corresponding t 99.8 3.8E-17 1.3E-21 168.4 38.5 364 19-404 38-452 (490)
18 2xm6_A Protein corresponding t 99.8 2.3E-16 8E-21 162.5 40.7 352 50-423 36-434 (490)
19 2ooe_A Cleavage stimulation fa 99.8 1.3E-16 4.3E-21 166.2 38.6 393 17-421 10-492 (530)
20 3hym_B Cell division cycle pro 99.8 2.5E-17 8.5E-22 160.0 30.9 284 51-375 20-322 (330)
21 1fch_A Peroxisomal targeting s 99.8 2.2E-18 7.5E-23 170.4 21.9 279 134-417 35-355 (368)
22 1fch_A Peroxisomal targeting s 99.8 4.9E-18 1.7E-22 167.9 21.6 280 66-352 38-355 (368)
23 4eqf_A PEX5-related protein; a 99.8 6.1E-18 2.1E-22 167.3 20.4 260 154-417 64-352 (365)
24 4g1t_A Interferon-induced prot 99.8 1.1E-16 3.8E-21 164.0 29.0 368 52-432 50-470 (472)
25 1b89_A Protein (clathrin heavy 99.8 5.8E-19 2E-23 172.5 10.9 280 101-414 15-304 (449)
26 3mkr_A Coatomer subunit epsilo 99.8 2.7E-16 9.4E-21 149.9 27.3 268 134-415 9-288 (291)
27 1xi4_A Clathrin heavy chain; a 99.8 3.3E-15 1.1E-19 162.1 38.4 349 19-416 984-1340(1630)
28 4eqf_A PEX5-related protein; a 99.8 1.3E-17 4.5E-22 164.8 18.7 261 88-352 64-352 (365)
29 2ooe_A Cleavage stimulation fa 99.8 1.2E-15 4.2E-20 158.7 33.6 364 50-422 10-455 (530)
30 3cv0_A Peroxisome targeting si 99.7 5.8E-17 2E-21 157.1 19.7 257 157-418 23-312 (327)
31 3mkr_A Coatomer subunit epsilo 99.7 1.9E-16 6.4E-21 151.1 21.9 245 162-421 6-264 (291)
32 4g1t_A Interferon-induced prot 99.7 1.9E-15 6.4E-20 154.8 29.0 364 19-399 50-471 (472)
33 3cv0_A Peroxisome targeting si 99.7 6.3E-16 2.2E-20 149.8 21.9 273 52-354 20-313 (327)
34 1xi4_A Clathrin heavy chain; a 99.7 6.1E-14 2.1E-18 152.3 36.0 347 18-413 1020-1376(1630)
35 3spa_A Mtrpol, DNA-directed RN 99.7 4.3E-17 1.5E-21 171.5 9.8 148 188-341 125-286 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 4.2E-17 1.5E-21 171.6 8.9 146 155-305 127-286 (1134)
37 3uq3_A Heat shock protein STI1 99.7 3.4E-15 1.2E-19 139.3 18.3 222 157-419 7-234 (258)
38 3uq3_A Heat shock protein STI1 99.7 9.3E-15 3.2E-19 136.2 20.9 187 226-422 6-203 (258)
39 2pl2_A Hypothetical conserved 99.7 2.9E-15 9.9E-20 136.4 16.8 194 222-419 2-212 (217)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.8E-14 1.3E-18 133.6 21.7 240 167-415 17-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.6 6.5E-14 2.2E-18 142.3 21.6 343 59-423 9-389 (452)
42 3u4t_A TPR repeat-containing p 99.6 7.3E-13 2.5E-17 124.6 26.1 253 127-406 6-269 (272)
43 1ouv_A Conserved hypothetical 99.6 6.7E-13 2.3E-17 125.2 25.4 224 154-390 5-254 (273)
44 3e4b_A ALGK; tetratricopeptide 99.6 7.8E-14 2.7E-18 141.7 20.2 374 26-419 9-419 (452)
45 1ouv_A Conserved hypothetical 99.6 8E-13 2.7E-17 124.7 25.9 223 189-423 5-253 (273)
46 2pl2_A Hypothetical conserved 99.6 1.7E-13 5.9E-18 124.5 18.9 195 51-251 3-211 (217)
47 2ho1_A Type 4 fimbrial biogene 99.6 1.7E-13 5.8E-18 127.5 18.6 195 225-421 37-238 (252)
48 3sf4_A G-protein-signaling mod 99.6 2E-13 6.9E-18 136.3 20.4 194 227-420 89-335 (406)
49 4a1s_A PINS, partner of inscut 99.6 1.2E-13 4E-18 138.6 18.6 195 226-420 127-371 (411)
50 2vq2_A PILW, putative fimbrial 99.5 3.1E-13 1.1E-17 123.0 19.5 194 225-420 8-210 (225)
51 2ho1_A Type 4 fimbrial biogene 99.5 6.1E-13 2.1E-17 123.7 21.9 208 155-397 37-248 (252)
52 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.9E-13 2E-17 125.3 21.5 242 64-314 16-269 (275)
53 2h6f_A Protein farnesyltransfe 99.5 3.9E-13 1.3E-17 132.6 21.0 244 155-405 97-366 (382)
54 2q7f_A YRRB protein; TPR, prot 99.5 8E-14 2.7E-18 128.7 15.0 145 256-403 91-238 (243)
55 3ro2_A PINS homolog, G-protein 99.5 2.7E-13 9.3E-18 131.3 18.9 259 161-421 11-332 (338)
56 2q7f_A YRRB protein; TPR, prot 99.5 1.2E-13 4.1E-18 127.5 15.2 196 223-421 21-222 (243)
57 3sf4_A G-protein-signaling mod 99.5 1.4E-13 4.9E-18 137.4 16.2 294 87-409 7-364 (406)
58 2h6f_A Protein farnesyltransfe 99.5 3E-13 1E-17 133.4 17.3 224 191-420 98-347 (382)
59 3u4t_A TPR repeat-containing p 99.5 8.8E-13 3E-17 124.0 19.5 220 198-422 11-251 (272)
60 2vq2_A PILW, putative fimbrial 99.5 2.3E-12 7.9E-17 117.1 21.7 201 194-398 12-222 (225)
61 3vtx_A MAMA; tetratricopeptide 99.5 1.8E-12 6.2E-17 114.2 18.2 164 255-421 4-170 (184)
62 4a1s_A PINS, partner of inscut 99.5 6.8E-13 2.3E-17 133.1 16.9 268 91-390 50-375 (411)
63 3ro2_A PINS homolog, G-protein 99.4 3E-12 1E-16 123.9 18.0 92 56-149 8-108 (338)
64 3ulq_A Response regulator aspa 99.4 7.8E-12 2.7E-16 124.2 21.1 225 161-386 109-367 (383)
65 4abn_A Tetratricopeptide repea 99.4 1.2E-12 4.2E-17 133.8 14.6 204 207-416 85-316 (474)
66 3ulq_A Response regulator aspa 99.4 2.6E-12 9E-17 127.6 16.3 224 196-420 109-367 (383)
67 3nf1_A KLC 1, kinesin light ch 99.4 6.9E-13 2.4E-17 127.2 11.6 241 155-419 27-305 (311)
68 3vtx_A MAMA; tetratricopeptide 99.4 4.1E-12 1.4E-16 111.9 15.0 165 224-392 4-175 (184)
69 3nf1_A KLC 1, kinesin light ch 99.4 1.7E-12 5.9E-17 124.4 13.4 240 122-390 25-310 (311)
70 4e6h_A MRNA 3'-END-processing 99.4 3.6E-10 1.2E-14 118.9 31.5 403 17-423 63-572 (679)
71 2ond_A Cleavage stimulation fa 99.4 8.6E-11 2.9E-15 112.9 24.7 183 207-392 81-275 (308)
72 4gyw_A UDP-N-acetylglucosamine 99.4 5E-12 1.7E-16 134.5 16.6 159 256-419 9-172 (723)
73 1hz4_A MALT regulatory protein 99.4 6.6E-10 2.2E-14 109.7 28.7 258 163-420 22-321 (373)
74 2ond_A Cleavage stimulation fa 99.3 2.8E-10 9.6E-15 109.2 24.9 215 70-319 33-269 (308)
75 3q15_A PSP28, response regulat 99.3 2.9E-11 1E-15 119.8 17.4 224 161-385 107-363 (378)
76 3as5_A MAMA; tetratricopeptide 99.3 3.9E-11 1.3E-15 105.1 15.0 162 225-420 8-172 (186)
77 3q15_A PSP28, response regulat 99.3 1.4E-09 4.9E-14 107.5 27.8 219 199-418 110-362 (378)
78 3as5_A MAMA; tetratricopeptide 99.3 9.1E-11 3.1E-15 102.7 16.5 169 190-393 8-179 (186)
79 4abn_A Tetratricopeptide repea 99.3 6.6E-11 2.3E-15 120.9 17.3 210 105-319 84-320 (474)
80 4i17_A Hypothetical protein; T 99.3 2.6E-10 8.9E-15 104.1 19.2 205 188-403 5-225 (228)
81 4e6h_A MRNA 3'-END-processing 99.3 1.1E-08 3.6E-13 107.8 32.5 371 50-423 63-535 (679)
82 1hz4_A MALT regulatory protein 99.2 4.1E-09 1.4E-13 103.9 27.8 259 59-318 20-320 (373)
83 4i17_A Hypothetical protein; T 99.2 9.6E-11 3.3E-15 107.0 14.4 186 224-421 6-209 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.2 1.7E-10 5.9E-15 122.8 13.6 160 225-389 9-176 (723)
85 1qqe_A Vesicular transport pro 99.2 4.1E-09 1.4E-13 100.2 22.0 157 162-318 44-226 (292)
86 1qqe_A Vesicular transport pro 99.2 1.3E-09 4.4E-14 103.7 18.2 211 170-395 32-277 (292)
87 3edt_B KLC 2, kinesin light ch 99.2 7.9E-11 2.7E-15 110.8 9.5 153 167-319 13-197 (283)
88 3edt_B KLC 2, kinesin light ch 99.1 4.7E-09 1.6E-13 98.5 20.7 150 135-284 12-197 (283)
89 3qky_A Outer membrane assembly 99.1 3.9E-09 1.3E-13 98.4 17.2 205 223-467 13-247 (261)
90 4ga2_A E3 SUMO-protein ligase 99.0 1.2E-10 4E-15 98.8 4.8 137 266-407 7-149 (150)
91 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.2E-08 4E-13 92.9 18.2 182 224-424 3-216 (225)
92 3qky_A Outer membrane assembly 99.0 4.6E-09 1.6E-13 98.0 15.1 201 188-409 13-249 (261)
93 2fo7_A Synthetic consensus TPR 99.0 4.1E-09 1.4E-13 86.5 12.5 129 258-420 3-131 (136)
94 2pzi_A Probable serine/threoni 99.0 9E-09 3.1E-13 109.9 18.4 167 236-407 402-583 (681)
95 3mv2_B Coatomer subunit epsilo 99.0 5.1E-08 1.7E-12 91.4 20.5 107 209-318 85-205 (310)
96 3rjv_A Putative SEL1 repeat pr 99.0 2.3E-08 8E-13 90.0 17.8 171 244-423 5-199 (212)
97 2fo7_A Synthetic consensus TPR 99.0 9.4E-09 3.2E-13 84.3 13.9 124 226-352 2-128 (136)
98 3qou_A Protein YBBN; thioredox 99.0 8E-09 2.8E-13 97.9 14.7 174 242-419 103-282 (287)
99 3mv2_B Coatomer subunit epsilo 98.9 1.4E-07 4.7E-12 88.5 20.7 255 100-395 24-290 (310)
100 4ga2_A E3 SUMO-protein ligase 98.9 1.8E-09 6E-14 91.5 7.2 121 297-420 3-128 (150)
101 2vsy_A XCC0866; transferase, g 98.9 9.7E-09 3.3E-13 107.5 13.5 158 238-399 2-169 (568)
102 2pzi_A Probable serine/threoni 98.9 2.8E-08 9.5E-13 106.1 16.9 188 201-394 402-609 (681)
103 3u3w_A Transcriptional activat 98.9 1.9E-07 6.6E-12 88.6 20.6 159 262-420 81-265 (293)
104 2ifu_A Gamma-SNAP; membrane fu 98.9 1.8E-08 6.1E-13 96.5 13.4 178 233-413 44-253 (307)
105 2ifu_A Gamma-SNAP; membrane fu 98.9 1.9E-08 6.7E-13 96.2 13.7 195 203-419 4-222 (307)
106 3gyz_A Chaperone protein IPGC; 98.9 5.5E-09 1.9E-13 88.2 8.5 101 322-422 30-134 (151)
107 2uy1_A Cleavage stimulation fa 98.9 4E-06 1.4E-10 85.4 30.8 351 20-385 15-411 (493)
108 2vsy_A XCC0866; transferase, g 98.8 2.5E-08 8.4E-13 104.4 14.7 148 203-355 2-156 (568)
109 4gco_A Protein STI-1; structur 98.8 2.6E-08 9E-13 81.3 10.1 106 293-401 15-124 (126)
110 2r5s_A Uncharacterized protein 98.8 7.6E-08 2.6E-12 83.7 13.4 155 228-419 9-171 (176)
111 2vgx_A Chaperone SYCD; alterna 98.8 1.1E-08 3.9E-13 86.1 7.8 100 322-421 15-118 (148)
112 4gco_A Protein STI-1; structur 98.8 1.6E-08 5.5E-13 82.6 8.3 99 323-421 8-110 (126)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.8 7.3E-08 2.5E-12 86.5 13.2 119 298-421 13-150 (213)
114 2c2l_A CHIP, carboxy terminus 98.8 3.1E-08 1.1E-12 93.5 11.1 189 226-420 5-198 (281)
115 3rjv_A Putative SEL1 repeat pr 98.8 2.1E-07 7.3E-12 83.6 16.0 171 209-389 5-199 (212)
116 3urz_A Uncharacterized protein 98.8 1.6E-07 5.6E-12 84.1 14.9 21 62-82 13-33 (208)
117 3urz_A Uncharacterized protein 98.7 2E-07 7E-12 83.4 15.3 22 162-183 11-32 (208)
118 2qfc_A PLCR protein; TPR, HTH, 98.7 2.5E-07 8.7E-12 87.7 16.7 162 258-419 77-264 (293)
119 2r5s_A Uncharacterized protein 98.7 2.4E-07 8.2E-12 80.5 14.8 154 127-283 9-171 (176)
120 3qou_A Protein YBBN; thioredox 98.7 8.2E-07 2.8E-11 83.9 19.3 160 121-283 114-282 (287)
121 3dra_A Protein farnesyltransfe 98.7 1.1E-06 3.8E-11 83.0 19.8 147 270-420 124-286 (306)
122 2yhc_A BAMD, UPF0169 lipoprote 98.7 2E-07 7E-12 84.6 14.2 183 190-393 4-219 (225)
123 3u3w_A Transcriptional activat 98.7 1.8E-06 6.1E-11 81.8 20.9 158 230-387 80-266 (293)
124 1a17_A Serine/threonine protei 98.7 1.5E-07 5.3E-12 80.4 11.6 124 294-419 16-144 (166)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.3E-06 7.9E-11 76.5 19.8 146 227-391 8-154 (213)
126 2uy1_A Cleavage stimulation fa 98.7 2.8E-06 9.6E-11 86.6 22.4 100 38-152 11-117 (493)
127 2xcb_A PCRH, regulatory protei 98.7 1.1E-07 3.7E-12 79.4 9.9 99 323-421 13-115 (142)
128 2kck_A TPR repeat; tetratricop 98.6 2.6E-07 8.8E-12 72.9 10.9 98 326-423 5-108 (112)
129 1na0_A Designed protein CTPR3; 98.6 2.1E-07 7.1E-12 75.0 10.5 113 292-406 10-125 (125)
130 2lni_A Stress-induced-phosphop 98.6 1.9E-07 6.4E-12 76.4 10.3 113 292-407 17-133 (133)
131 2vyi_A SGTA protein; chaperone 98.6 1.5E-07 5E-12 76.6 9.6 115 292-408 13-130 (131)
132 1p5q_A FKBP52, FK506-binding p 98.6 1.2E-07 4.1E-12 91.9 10.3 142 255-418 146-291 (336)
133 2qfc_A PLCR protein; TPR, HTH, 98.6 1.3E-06 4.4E-11 82.8 16.6 160 228-387 78-266 (293)
134 3dra_A Protein farnesyltransfe 98.6 4E-05 1.4E-09 72.3 26.6 216 64-284 44-286 (306)
135 2e2e_A Formate-dependent nitri 98.6 1.1E-07 3.7E-12 82.7 7.6 119 302-422 21-145 (177)
136 3gw4_A Uncharacterized protein 98.6 1.7E-06 5.7E-11 76.6 15.4 61 258-318 68-134 (203)
137 3upv_A Heat shock protein STI1 98.5 2.1E-07 7.2E-12 75.7 8.4 94 328-421 5-101 (126)
138 3gw4_A Uncharacterized protein 98.5 6.4E-07 2.2E-11 79.3 12.3 116 237-352 4-132 (203)
139 1hxi_A PEX5, peroxisome target 98.5 2.1E-07 7.1E-12 75.3 7.7 94 328-421 18-114 (121)
140 3q49_B STIP1 homology and U bo 98.5 6.1E-07 2.1E-11 73.9 9.6 96 326-421 8-106 (137)
141 3sz7_A HSC70 cochaperone (SGT) 98.5 3.8E-07 1.3E-11 78.1 8.4 92 329-420 13-107 (164)
142 4gcn_A Protein STI-1; structur 98.5 3.5E-07 1.2E-11 74.7 7.7 92 329-420 10-111 (127)
143 2vgx_A Chaperone SYCD; alterna 98.5 3.2E-07 1.1E-11 77.2 7.6 102 292-396 22-127 (148)
144 4f3v_A ESX-1 secretion system 98.4 3.4E-06 1.2E-10 78.0 14.5 132 262-398 108-247 (282)
145 2e2e_A Formate-dependent nitri 98.4 7.2E-07 2.5E-11 77.4 9.5 125 267-395 21-152 (177)
146 2lni_A Stress-induced-phosphop 98.4 1.1E-06 3.7E-11 71.7 9.9 96 326-421 15-113 (133)
147 1elw_A TPR1-domain of HOP; HOP 98.4 1.4E-06 4.6E-11 69.3 10.2 106 294-401 7-115 (118)
148 2fbn_A 70 kDa peptidylprolyl i 98.4 9.3E-07 3.2E-11 78.3 10.0 166 234-420 13-185 (198)
149 2dba_A Smooth muscle cell asso 98.4 2.2E-06 7.6E-11 71.3 11.9 108 294-404 31-145 (148)
150 2c2l_A CHIP, carboxy terminus 98.4 3.1E-06 1.1E-10 79.6 14.0 189 190-388 4-200 (281)
151 4f3v_A ESX-1 secretion system 98.4 7E-06 2.4E-10 75.8 15.8 182 65-251 18-234 (282)
152 3sz7_A HSC70 cochaperone (SGT) 98.4 1.4E-06 4.6E-11 74.6 10.3 106 292-400 12-121 (164)
153 3gyz_A Chaperone protein IPGC; 98.4 2.3E-06 7.8E-11 72.0 11.3 96 52-150 35-130 (151)
154 1a17_A Serine/threonine protei 98.4 4.7E-06 1.6E-10 70.9 13.5 125 54-181 14-143 (166)
155 3upv_A Heat shock protein STI1 98.4 1.2E-06 4.2E-11 71.0 9.2 107 293-402 6-122 (126)
156 1elw_A TPR1-domain of HOP; HOP 98.4 1.3E-06 4.3E-11 69.5 9.1 95 327-421 4-101 (118)
157 2xcb_A PCRH, regulatory protei 98.4 1.1E-06 3.7E-11 73.2 8.7 103 293-398 20-126 (142)
158 1na0_A Designed protein CTPR3; 98.4 5.6E-06 1.9E-10 66.3 12.6 93 54-149 10-102 (125)
159 2hr2_A Hypothetical protein; a 98.3 1.2E-06 4.2E-11 73.1 7.1 108 292-420 12-130 (159)
160 3q7a_A Farnesyltransferase alp 98.3 0.00055 1.9E-08 65.4 26.2 180 56-240 57-257 (349)
161 2vyi_A SGTA protein; chaperone 98.3 9.1E-06 3.1E-10 65.6 12.2 115 53-170 12-129 (131)
162 3q49_B STIP1 homology and U bo 98.3 2.8E-06 9.7E-11 69.8 8.9 98 290-390 8-109 (137)
163 3q7a_A Farnesyltransferase alp 98.3 3.4E-05 1.2E-09 73.7 17.3 230 158-420 57-330 (349)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.6E-06 1.2E-10 85.1 11.1 142 256-419 268-413 (457)
165 2dba_A Smooth muscle cell asso 98.3 6.3E-06 2.1E-10 68.5 10.8 96 326-421 27-128 (148)
166 4b4t_Q 26S proteasome regulato 98.2 8.1E-06 2.8E-10 81.8 13.1 161 259-419 58-243 (434)
167 1p5q_A FKBP52, FK506-binding p 98.2 8.2E-06 2.8E-10 78.9 12.2 119 224-346 146-283 (336)
168 1elr_A TPR2A-domain of HOP; HO 98.2 5.7E-06 2E-10 66.9 9.2 45 358-403 79-123 (131)
169 1wao_1 Serine/threonine protei 98.2 1.8E-06 6E-11 87.9 7.3 114 300-416 15-134 (477)
170 3ro3_A PINS homolog, G-protein 98.2 5.7E-06 2E-10 69.7 9.5 137 257-420 10-157 (164)
171 3k9i_A BH0479 protein; putativ 98.2 2E-06 6.9E-11 68.8 6.0 81 340-420 3-89 (117)
172 2xev_A YBGF; tetratricopeptide 98.2 7E-06 2.4E-10 66.6 9.2 88 333-420 8-104 (129)
173 1ihg_A Cyclophilin 40; ppiase 98.2 5.4E-06 1.9E-10 81.2 10.0 135 257-413 224-362 (370)
174 3ro3_A PINS homolog, G-protein 98.2 7.8E-06 2.7E-10 68.9 9.8 95 225-319 9-117 (164)
175 3rkv_A Putative peptidylprolyl 98.2 4.5E-06 1.5E-10 71.1 8.2 65 357-421 62-126 (162)
176 1elr_A TPR2A-domain of HOP; HO 98.2 3.7E-06 1.3E-10 68.1 7.2 93 329-421 6-108 (131)
177 4gcn_A Protein STI-1; structur 98.1 9.9E-06 3.4E-10 65.8 9.4 106 257-390 9-115 (127)
178 1wao_1 Serine/threonine protei 98.1 8E-06 2.7E-10 83.0 10.5 117 231-351 12-134 (477)
179 4b4t_Q 26S proteasome regulato 98.1 4.9E-05 1.7E-09 76.0 16.2 191 162-352 11-241 (434)
180 2fbn_A 70 kDa peptidylprolyl i 98.1 3.5E-06 1.2E-10 74.6 6.5 146 25-173 9-174 (198)
181 3dss_A Geranylgeranyl transfer 98.1 0.00039 1.3E-08 66.1 20.8 92 206-299 90-187 (331)
182 3dss_A Geranylgeranyl transfer 98.1 0.00034 1.2E-08 66.4 20.5 177 241-421 90-304 (331)
183 1hxi_A PEX5, peroxisome target 98.1 6.2E-06 2.1E-10 66.4 7.3 96 294-392 20-119 (121)
184 2if4_A ATFKBP42; FKBP-like, al 98.1 2.1E-06 7.3E-11 83.1 5.3 146 256-421 179-328 (338)
185 1dce_A Protein (RAB geranylger 98.1 0.0001 3.5E-09 76.3 17.7 166 241-410 45-244 (567)
186 2xev_A YBGF; tetratricopeptide 98.1 2E-05 6.9E-10 63.8 9.9 100 297-399 8-117 (129)
187 3k9i_A BH0479 protein; putativ 98.1 2.1E-06 7E-11 68.8 3.7 93 304-396 3-99 (117)
188 3rkv_A Putative peptidylprolyl 98.0 7E-06 2.4E-10 69.9 6.8 75 327-401 63-141 (162)
189 2if4_A ATFKBP42; FKBP-like, al 98.0 1.3E-05 4.3E-10 77.6 9.0 148 225-392 179-333 (338)
190 2kck_A TPR repeat; tetratricop 98.0 4.9E-05 1.7E-09 59.3 10.8 62 54-117 7-68 (112)
191 3n71_A Histone lysine methyltr 98.0 3E-05 1E-09 78.4 11.5 121 301-421 319-464 (490)
192 1ihg_A Cyclophilin 40; ppiase 97.9 4.9E-05 1.7E-09 74.4 11.6 112 293-421 225-336 (370)
193 2hr2_A Hypothetical protein; a 97.9 1.6E-05 5.4E-10 66.4 6.9 111 257-398 12-142 (159)
194 2l6j_A TPR repeat-containing p 97.9 6.7E-06 2.3E-10 64.6 4.4 90 327-416 4-102 (111)
195 3ma5_A Tetratricopeptide repea 97.9 4.8E-05 1.6E-09 58.7 8.9 64 357-420 6-69 (100)
196 2kat_A Uncharacterized protein 97.9 2.3E-05 8E-10 62.1 7.2 75 346-420 4-81 (115)
197 1na3_A Designed protein CTPR2; 97.9 1.9E-05 6.5E-10 59.3 6.4 80 327-406 9-91 (91)
198 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 5.9E-05 2E-09 76.2 9.5 65 358-422 317-381 (457)
199 1zu2_A Mitochondrial import re 97.8 9.8E-06 3.4E-10 67.5 3.0 84 338-421 13-120 (158)
200 1klx_A Cysteine rich protein B 97.8 0.00023 7.9E-09 58.6 11.1 110 306-423 10-128 (138)
201 3bee_A Putative YFRE protein; 97.7 0.00024 8.2E-09 53.7 8.9 68 356-423 4-74 (93)
202 3n71_A Histone lysine methyltr 97.6 0.00072 2.5E-08 68.3 13.9 85 63-147 319-416 (490)
203 3qwp_A SET and MYND domain-con 97.6 0.00021 7.2E-09 71.1 9.5 114 335-466 295-427 (429)
204 2l6j_A TPR repeat-containing p 97.6 0.00011 3.8E-09 57.4 5.9 97 52-151 3-105 (111)
205 1klx_A Cysteine rich protein B 97.5 0.0011 3.7E-08 54.4 11.7 110 270-388 9-127 (138)
206 1zu2_A Mitochondrial import re 97.5 6.2E-05 2.1E-09 62.7 3.6 51 343-393 62-126 (158)
207 1na3_A Designed protein CTPR2; 97.4 0.00054 1.8E-08 51.0 7.9 65 357-421 8-72 (91)
208 2kat_A Uncharacterized protein 97.3 0.00038 1.3E-08 54.9 6.6 65 326-390 18-85 (115)
209 1dce_A Protein (RAB geranylger 97.3 0.014 4.8E-07 60.3 19.6 172 67-243 43-244 (567)
210 3qww_A SET and MYND domain-con 97.2 0.00054 1.8E-08 68.1 7.7 81 340-420 311-410 (433)
211 2kc7_A BFR218_protein; tetratr 97.2 0.0011 3.8E-08 50.4 7.3 63 333-395 6-72 (99)
212 1wy6_A Hypothetical protein ST 97.1 0.04 1.4E-06 43.5 15.5 141 266-424 17-157 (172)
213 3ma5_A Tetratricopeptide repea 97.0 0.0019 6.4E-08 49.5 7.6 59 225-283 7-68 (100)
214 3qww_A SET and MYND domain-con 97.0 0.0016 5.6E-08 64.5 8.9 92 304-395 311-424 (433)
215 2kc7_A BFR218_protein; tetratr 97.0 0.0017 5.9E-08 49.3 6.8 59 364-422 6-65 (99)
216 3mkq_A Coatomer beta'-subunit; 97.0 0.023 7.8E-07 61.6 18.3 42 135-178 610-652 (814)
217 3qwp_A SET and MYND domain-con 97.0 0.003 1E-07 62.7 10.2 98 299-396 295-414 (429)
218 3ly7_A Transcriptional activat 96.9 0.012 4.1E-07 56.1 13.6 64 357-421 276-339 (372)
219 3mkq_A Coatomer beta'-subunit; 96.9 0.065 2.2E-06 58.0 21.3 154 61-250 607-761 (814)
220 3u64_A Protein TP_0956; tetrat 96.6 0.0061 2.1E-07 55.7 8.1 86 343-428 179-276 (301)
221 1pc2_A Mitochondria fission pr 96.5 0.015 5.2E-07 47.7 9.1 64 357-420 31-99 (152)
222 1qsa_A Protein (soluble lytic 96.5 0.84 2.9E-05 47.2 24.2 243 128-386 76-347 (618)
223 3ly7_A Transcriptional activat 96.4 0.018 6.1E-07 55.0 10.7 155 243-401 182-352 (372)
224 3lvg_A Clathrin heavy chain 1; 96.3 0.00038 1.3E-08 67.8 -1.3 239 18-277 52-325 (624)
225 3lvg_A Clathrin heavy chain 1; 96.3 5.1E-06 1.7E-10 80.6 -14.2 262 123-413 53-325 (624)
226 2v5f_A Prolyl 4-hydroxylase su 96.3 0.008 2.7E-07 46.3 6.4 42 357-398 45-86 (104)
227 3bee_A Putative YFRE protein; 95.8 0.021 7E-07 42.9 6.3 68 325-392 4-77 (93)
228 3mkq_B Coatomer subunit alpha; 95.5 0.52 1.8E-05 39.6 14.4 101 234-352 14-114 (177)
229 3mkq_B Coatomer subunit alpha; 95.5 0.97 3.3E-05 38.0 16.4 104 132-252 13-116 (177)
230 1pc2_A Mitochondria fission pr 95.3 0.066 2.3E-06 43.9 8.2 92 273-396 15-109 (152)
231 2v5f_A Prolyl 4-hydroxylase su 95.1 0.1 3.4E-06 39.9 8.2 64 357-420 4-74 (104)
232 3u64_A Protein TP_0956; tetrat 94.8 2.2 7.5E-05 39.0 17.4 86 207-292 180-278 (301)
233 1nzn_A CGI-135 protein, fissio 93.9 0.71 2.4E-05 36.3 10.6 38 360-397 76-113 (126)
234 4gns_B Protein CSD3, chitin bi 93.6 0.29 1E-05 51.5 10.3 55 365-419 344-398 (754)
235 2ff4_A Probable regulatory pro 93.0 0.76 2.6E-05 44.6 11.7 69 360-428 173-246 (388)
236 1nzn_A CGI-135 protein, fissio 92.9 0.36 1.2E-05 38.0 7.4 64 357-420 34-102 (126)
237 1wy6_A Hypothetical protein ST 92.5 3.2 0.00011 32.9 14.4 85 136-222 73-157 (172)
238 2wpv_A GET4, UPF0363 protein Y 92.4 6.8 0.00023 36.3 19.0 190 105-320 13-217 (312)
239 4h7y_A Dual specificity protei 91.7 0.32 1.1E-05 39.4 5.8 54 372-425 74-127 (161)
240 4h7y_A Dual specificity protei 91.0 0.89 3E-05 36.8 7.6 110 253-393 10-129 (161)
241 3ffl_A Anaphase-promoting comp 90.7 1.4 4.6E-05 36.5 8.7 35 331-366 126-163 (167)
242 2p58_C Putative type III secre 90.5 3.3 0.00011 30.7 9.4 87 204-295 21-107 (116)
243 2uwj_G Type III export protein 90.1 3 0.0001 30.8 9.0 87 204-295 20-106 (115)
244 3lpz_A GET4 (YOR164C homolog); 89.0 15 0.00051 34.4 23.6 168 126-319 37-215 (336)
245 4ady_A RPN2, 26S proteasome re 88.7 26 0.0009 37.8 18.9 50 202-252 536-587 (963)
246 4fhn_B Nucleoporin NUP120; pro 87.8 25 0.00087 39.4 19.5 113 229-344 846-988 (1139)
247 2uwj_G Type III export protein 87.2 7.4 0.00025 28.8 9.8 88 103-195 20-107 (115)
248 4b4t_P 26S proteasome regulato 87.1 24 0.00083 34.7 21.2 95 258-352 139-243 (445)
249 1y8m_A FIS1; mitochondria, unk 86.9 3.6 0.00012 32.9 8.5 48 373-420 57-105 (144)
250 2p58_C Putative type III secre 86.8 7.8 0.00027 28.7 10.4 88 103-195 21-108 (116)
251 1zbp_A Hypothetical protein VP 85.8 4.1 0.00014 36.7 9.2 118 265-393 6-135 (273)
252 3ffl_A Anaphase-promoting comp 85.8 2.9 0.0001 34.5 7.6 122 285-418 12-148 (167)
253 3txn_A 26S proteasome regulato 85.2 26 0.0009 33.7 15.4 163 190-352 19-206 (394)
254 2ff4_A Probable regulatory pro 84.2 4.3 0.00015 39.3 9.5 68 58-127 176-248 (388)
255 4fhn_B Nucleoporin NUP120; pro 83.8 19 0.00063 40.5 15.7 67 358-424 899-970 (1139)
256 4gns_B Protein CSD3, chitin bi 82.7 11 0.00038 39.7 12.4 122 194-317 252-397 (754)
257 2wpv_A GET4, UPF0363 protein Y 82.4 31 0.0011 31.9 22.0 167 227-419 35-215 (312)
258 1v54_E Cytochrome C oxidase po 82.3 5.9 0.0002 29.5 7.1 64 271-336 25-88 (109)
259 3esl_A Checkpoint serine/threo 81.9 23 0.0008 30.2 13.5 104 344-473 61-171 (202)
260 1v54_E Cytochrome C oxidase po 81.9 14 0.00046 27.6 8.9 60 71-132 28-87 (109)
261 3o48_A Mitochondria fission 1 81.5 4.5 0.00016 31.9 6.8 48 373-420 58-106 (134)
262 3lpz_A GET4 (YOR164C homolog); 78.0 45 0.0015 31.1 20.5 134 22-169 37-181 (336)
263 4b4t_P 26S proteasome regulato 77.9 55 0.0019 32.1 20.2 181 67-250 30-243 (445)
264 2l0z_A Glycoprotein G2; zinc-b 75.6 0.92 3.2E-05 26.8 0.9 10 541-550 20-29 (42)
265 3o48_A Mitochondria fission 1 74.3 24 0.00083 27.8 9.0 38 358-395 78-115 (134)
266 2qx5_A Nucleoporin NIC96; mRNA 74.1 86 0.0029 32.4 16.8 79 163-252 302-383 (661)
267 1zbp_A Hypothetical protein VP 73.1 8.1 0.00028 34.7 6.8 56 336-391 6-64 (273)
268 2y69_E Cytochrome C oxidase su 73.1 14 0.00047 29.2 7.1 63 272-336 69-131 (152)
269 2y69_E Cytochrome C oxidase su 72.5 30 0.001 27.4 8.9 60 71-132 71-130 (152)
270 1wdy_A 2-5A-dependent ribonucl 71.0 30 0.001 30.9 10.7 116 24-151 6-129 (285)
271 4a1g_A Mitotic checkpoint seri 69.7 35 0.0012 27.6 9.3 78 344-425 52-134 (152)
272 2k0q_A Putative uncharacterize 68.5 1.4 4.7E-05 29.8 0.6 20 527-546 8-27 (74)
273 2wvi_A Mitotic checkpoint seri 65.5 45 0.0015 27.4 9.3 79 343-425 46-129 (164)
274 3ltm_A Alpha-REP4; protein eng 64.2 65 0.0022 27.2 20.3 154 39-205 19-172 (211)
275 2hgo_A CASSIICOLIN; toxin, dis 63.4 1.3 4.5E-05 22.6 -0.2 13 539-551 8-22 (27)
276 4ady_A RPN2, 26S proteasome re 63.0 1.7E+02 0.0059 31.6 26.5 248 134-385 384-656 (963)
277 1wdy_A 2-5A-dependent ribonucl 61.0 87 0.003 27.6 12.9 22 269-290 192-213 (285)
278 1y8m_A FIS1; mitochondria, unk 60.8 62 0.0021 25.8 10.6 37 359-395 78-114 (144)
279 4b4t_R RPN7, 26S proteasome re 60.4 40 0.0014 32.8 9.8 90 328-418 132-234 (429)
280 3ltj_A Alpharep-4; protein eng 59.8 76 0.0026 26.5 21.2 152 123-283 27-178 (201)
281 3esl_A Checkpoint serine/threo 57.6 89 0.0031 26.6 10.3 54 69-122 95-148 (202)
282 2nsz_A Programmed cell death p 57.1 48 0.0017 25.9 7.9 65 228-292 10-79 (129)
283 1qsa_A Protein (soluble lytic 56.6 1.8E+02 0.0061 29.8 36.2 239 169-425 228-483 (618)
284 4b4t_R RPN7, 26S proteasome re 54.0 34 0.0012 33.4 8.0 94 227-320 133-237 (429)
285 3ltm_A Alpha-REP4; protein eng 53.9 99 0.0034 26.0 21.0 61 223-284 124-184 (211)
286 3txn_A 26S proteasome regulato 52.7 1.6E+02 0.0055 28.1 28.6 89 324-423 253-345 (394)
287 2ion_A PDCD4, programmed cell 47.6 50 0.0017 26.7 6.7 65 228-292 12-81 (152)
288 3bqo_A Telomeric repeat-bindin 47.5 64 0.0022 27.3 7.2 60 343-403 94-162 (211)
289 4b4t_S RPN3, 26S proteasome re 45.8 1.1E+02 0.0039 30.3 10.1 61 225-285 231-299 (523)
290 1qc6_A EVH1 domain from ENA/VA 42.5 11 0.00036 29.8 1.8 25 522-546 63-87 (130)
291 1k1a_A B-cell lymphoma 3-encod 41.7 1.3E+02 0.0045 25.6 9.4 19 101-119 18-36 (241)
292 3ltj_A Alpharep-4; protein eng 41.6 1.5E+02 0.0051 24.5 20.9 151 43-206 18-168 (201)
293 1k1a_A B-cell lymphoma 3-encod 40.1 95 0.0032 26.6 8.1 85 60-150 13-102 (241)
294 4aez_C MAD3, mitotic spindle c 40.1 1.3E+02 0.0045 26.1 8.4 78 344-425 101-183 (223)
295 2nsz_A Programmed cell death p 40.1 93 0.0032 24.2 7.0 23 159-181 11-33 (129)
296 4gq2_M Nucleoporin NUP120; bet 38.8 3.2E+02 0.011 29.7 13.4 52 130-182 816-867 (950)
297 2d2s_A Exocyst complex compone 37.6 64 0.0022 28.3 6.3 86 263-352 25-116 (235)
298 4a1g_A Mitotic checkpoint seri 37.3 1.6E+02 0.0056 23.7 9.7 54 70-123 82-135 (152)
299 3eu9_A Huntingtin-interacting 37.2 1.1E+02 0.0036 26.1 8.0 108 30-149 16-131 (240)
300 1oyz_A Hypothetical protein YI 37.0 2.2E+02 0.0075 25.1 23.0 49 50-103 34-82 (280)
301 3eiq_C Programmed cell death p 36.3 2.8E+02 0.0095 26.1 17.3 65 228-292 220-289 (358)
302 4gq2_M Nucleoporin NUP120; bet 35.7 3.4E+02 0.011 29.6 12.9 47 359-405 898-949 (950)
303 1bpo_A Protein (clathrin); cla 35.3 3E+02 0.01 26.9 10.8 136 204-352 343-481 (494)
304 2ion_A PDCD4, programmed cell 33.9 1.2E+02 0.0043 24.3 7.0 23 159-181 13-35 (152)
305 3ygs_P Procaspase 9; apoptosis 32.0 65 0.0022 23.6 4.6 38 239-276 51-88 (97)
306 3ljn_A Hypothetical protein; a 31.8 2.3E+02 0.008 26.1 9.9 19 334-352 177-195 (364)
307 1n11_A Ankyrin; clathrin, BAND 31.8 2E+02 0.0068 27.5 9.7 113 26-150 17-136 (437)
308 2r9g_A AAA ATPase, central reg 30.2 2.5E+02 0.0086 23.8 9.6 63 158-221 14-84 (204)
309 3kea_A K1L; tropism, ANK repea 29.2 2E+02 0.0069 25.6 8.6 146 267-427 70-223 (285)
310 2d2s_A Exocyst complex compone 29.2 2E+02 0.0068 25.1 8.1 21 162-182 25-45 (235)
311 3hra_A Ankyrin repeat family p 29.1 2E+02 0.0067 23.6 8.1 14 36-49 16-29 (201)
312 3ygs_P Procaspase 9; apoptosis 28.3 59 0.002 23.9 3.8 38 138-175 51-88 (97)
313 3hra_A Ankyrin repeat family p 28.2 1.4E+02 0.0047 24.6 6.9 156 62-224 11-172 (201)
314 2lix_A IMKTX104, potassium cha 33.7 13 0.00044 18.9 0.0 6 542-547 21-26 (27)
315 1d0d_A TAP, anticoagulant prot 27.5 6.2 0.00021 24.6 -1.4 13 539-551 25-37 (60)
316 2zu6_B Programmed cell death p 27.4 3.6E+02 0.012 24.6 13.2 25 129-153 8-32 (307)
317 2fe3_A Peroxide operon regulat 27.0 1.5E+02 0.0053 23.4 6.5 38 203-240 34-71 (145)
318 1ya0_A SMG-7 transcript varian 26.9 1.6E+02 0.0054 29.3 7.8 46 368-413 162-207 (497)
319 3kae_A CDC27, possible protein 26.8 2.7E+02 0.0093 23.0 16.5 81 236-318 44-141 (242)
320 1oyz_A Hypothetical protein YI 26.8 3.2E+02 0.011 23.9 21.9 49 18-68 35-83 (280)
321 3kae_A CDC27, possible protein 26.7 2.7E+02 0.0093 23.0 9.0 52 134-187 43-94 (242)
322 2fe3_A Peroxide operon regulat 26.2 1.6E+02 0.0055 23.3 6.5 60 79-140 13-72 (145)
323 3kea_A K1L; tropism, ANK repea 25.4 1.5E+02 0.0052 26.4 7.0 16 235-250 202-217 (285)
324 2xig_A Ferric uptake regulatio 25.3 2.1E+02 0.0073 22.7 7.1 61 78-140 17-77 (150)
325 3bge_A Predicted ATPase; struc 24.9 3.1E+02 0.011 23.1 8.9 47 158-204 7-56 (201)
326 3jxi_A Vanilloid receptor-rela 24.6 69 0.0023 28.1 4.4 54 61-115 10-72 (260)
327 3ljn_A Hypothetical protein; a 24.4 1.2E+02 0.0041 28.2 6.3 15 236-250 181-195 (364)
328 4aez_C MAD3, mitotic spindle c 24.0 3.5E+02 0.012 23.4 9.4 53 70-122 131-183 (223)
329 1ug3_A EIF4GI, eukaryotic prot 23.7 2.8E+02 0.0095 25.8 8.5 140 128-281 15-166 (339)
330 1mzb_A Ferric uptake regulatio 22.9 2.5E+02 0.0086 21.8 7.0 44 96-139 24-68 (136)
331 2xig_A Ferric uptake regulatio 22.7 2.4E+02 0.0082 22.4 6.9 45 262-306 32-76 (150)
332 2ko4_A Mediator of RNA polymer 22.4 1.4E+02 0.0047 20.9 4.3 37 43-79 24-62 (81)
333 1ddw_A GLGF-domain protein hom 22.3 27 0.00093 27.0 1.0 27 522-548 59-85 (120)
334 4ets_A Ferric uptake regulatio 21.6 1.9E+02 0.0065 23.5 6.1 69 70-140 14-85 (162)
335 3b7b_A Euchromatic histone-lys 21.4 3.2E+02 0.011 23.0 8.2 19 402-420 217-235 (237)
336 4b4t_S RPN3, 26S proteasome re 21.2 1.4E+02 0.0047 29.8 5.9 62 357-420 230-298 (523)
337 3ctd_A Putative ATPase, AAA fa 20.8 3.9E+02 0.014 22.8 9.0 66 156-221 33-106 (213)
338 2dl1_A Spartin; SPG20, MIT, st 20.7 1.7E+02 0.006 22.2 5.0 16 405-420 67-82 (116)
339 2b7e_A PRE-mRNA processing pro 20.6 97 0.0033 20.4 3.1 30 69-99 2-31 (59)
340 1n11_A Ankyrin; clathrin, BAND 20.5 3.9E+02 0.013 25.3 9.4 82 60-150 18-103 (437)
341 2yru_A Steroid receptor RNA ac 20.4 1.6E+02 0.0053 22.6 4.9 42 177-218 48-89 (118)
342 3mv2_A Coatomer subunit alpha; 20.2 5.1E+02 0.017 23.8 13.5 51 357-421 206-256 (325)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.9e-37 Score=324.64 Aligned_cols=398 Identities=11% Similarity=0.046 Sum_probs=349.8
Q ss_pred cCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcC--CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHc----------
Q 048830 15 ARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQI--QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA---------- 82 (551)
Q Consensus 15 g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------- 82 (551)
+..|+..+++.++..|.+. |++++|..+|+.+ .+++..+|+.++.+|.+.|++++|+++|+++...
T Consensus 112 ~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 189 (597)
T 2xpi_A 112 DITGNPNDAFWLAQVYCCT--GDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189 (597)
T ss_dssp HHHCCHHHHHHHHHHHHHT--TCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------
T ss_pred hhCCCchHHHHHHHHHHHc--CcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccc
Confidence 3457888999999999999 9999999999988 4678999999999999999999999999853221
Q ss_pred -----CCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH----------------------------
Q 048830 83 -----SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN---------------------------- 129 (551)
Q Consensus 83 -----~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---------------------------- 129 (551)
+.. ++..+|+.++.+|.+.|++++|.+.|+++.+.+ +.+...+..
T Consensus 190 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (597)
T 2xpi_A 190 LMQDGGIK-LEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267 (597)
T ss_dssp -CCCSSCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG
T ss_pred cccccccc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch
Confidence 111 357899999999999999999999999999875 223333333
Q ss_pred ----------HHHHHHhCCCHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHH
Q 048830 130 ----------LMRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197 (551)
Q Consensus 130 ----------li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 197 (551)
++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++
T Consensus 268 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 346 (597)
T 2xpi_A 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHH
Confidence 35566788999999999999988 899999999999999999999999999998765 34677899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHH
Q 048830 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---KRDVLSWNSMIVGYGVHGRGDE 274 (551)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 274 (551)
.++...|++++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999764 4578899999999999999999999999875 3578899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcC
Q 048830 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354 (551)
Q Consensus 275 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 354 (551)
|+++|++|.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|++++
T Consensus 426 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 426 AISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999864 457789999999999999999999999999864 23368889999999999999999999999843
Q ss_pred C--------CC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 355 P--------SD--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 355 ~--------~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
. .+ ..+|..++.+|...|++++|...++++++.+|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 2 12 7899999999999999999999999999999999999999999999999999999999999764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-35 Score=311.08 Aligned_cols=380 Identities=8% Similarity=-0.017 Sum_probs=336.6
Q ss_pred CCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCC-------------------ChhhHHHHHHHHHcCCChhHHHHHH
Q 048830 16 RQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNP-------------------QTQAWNSLIRAFAQSLSPLQAIFYY 76 (551)
Q Consensus 16 ~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~l~ 76 (551)
..+++.+++.++.+|.++ |++++|.++|+++.+. +..+|+.++.+|.+.|++++|+++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 223 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKL--YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECY 223 (597)
T ss_dssp GGTCHHHHHHHHHHHHHT--TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHH--hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 478999999999999999 9999999999965433 4889999999999999999999999
Q ss_pred HHHHHcCCCCCChhhHHHH--------------------------------------HHHHhccCChHHHHHHHHHHHHh
Q 048830 77 NHMLMASLSRPDTFTFTFT--------------------------------------LKACERVKALNKCQELHGFVIRS 118 (551)
Q Consensus 77 ~~m~~~~~~~pd~~~~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~~ 118 (551)
++|.+.++. +...+..+ +..|.+.|++++|.++|+.+.+.
T Consensus 224 ~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 224 KEALMVDAK--CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHCTT--CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHhCch--hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 999987642 33333322 45566788999999999998775
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHH
Q 048830 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195 (551)
Q Consensus 119 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 195 (551)
+++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..++..
T Consensus 302 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 378 (597)
T 2xpi_A 302 --EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLA 378 (597)
T ss_dssp --GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHH
T ss_pred --CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 58999999999999999999999999999863 467889999999999999999999999998543 456889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCCh
Q 048830 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRG 272 (551)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 272 (551)
++..|.+.|++++|.++++.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999864 34678999999999999999999999998753 4788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCC--ccchhhhhHHHhhcCCHHHHH
Q 048830 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY---NLKPG--IKHYGCLVDLYGRAGKLEKAL 347 (551)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~ 347 (551)
++|.++|++|.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999864 4478899999999999999999999999997643 55776 789999999999999999999
Q ss_pred HHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh
Q 048830 348 EVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404 (551)
Q Consensus 348 ~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 404 (551)
++|++++. .+..+|..+..+|...|++++|...++++++++|+++..+..++++|..
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99998543 3899999999999999999999999999999999999999999998864
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=9.6e-28 Score=240.20 Aligned_cols=371 Identities=12% Similarity=0.047 Sum_probs=312.8
Q ss_pred HHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC
Q 048830 27 LNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103 (551)
Q Consensus 27 i~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~ 103 (551)
...+.+. |++++|.+.|..+. +.+...+..+...+.+.|++++|...++......+ .+..+|..+..++.+.|
T Consensus 6 a~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQA--GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHCC
Confidence 4456667 99999999998753 34566777778888999999999999999888764 57788999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHLEALKLYER 180 (551)
Q Consensus 104 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (551)
++++|...|+++++.. +.+...+..+..+|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|++
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999998874 45567889999999999999999999988764 4 455678888889999999999999999
Q ss_pred hhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHh
Q 048830 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVL 257 (551)
Q Consensus 181 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~ 257 (551)
+.+.. +.+..++..+...+...|++++|...++.+++.+ +.+...+..+...+...|++++|...|++..+ .+..
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 88753 3346788888899999999999999999999875 33577888899999999999999999987652 4678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 337 (551)
+|..+...|...|++++|+..|+++.+.. +.+..++..+..++.+.|++++|...|+++.+. .+.+..++..+..++
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHH
Confidence 89999999999999999999999998853 234577888999999999999999999999764 344678889999999
Q ss_pred hhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 338 GRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
.+.|++++|.+.+++++.. +..+|..+...+...|++++|...+++++++.|+++.+|..++.++...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999986654 788899999999999999999999999999999999999999988877663
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=7.4e-27 Score=233.73 Aligned_cols=352 Identities=13% Similarity=0.043 Sum_probs=309.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 048830 59 LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138 (551)
Q Consensus 59 li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 138 (551)
+...+.+.|++++|+..+.++.+..+ .+...+..+...+...|++++|...+...++.. +.+..+|..+..+|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 34567789999999999999988764 355667777788889999999999999998874 678889999999999999
Q ss_pred CHHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 048830 139 VIEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD-GFTLVCLLSSCAHVGALNMGIFLHR 214 (551)
Q Consensus 139 ~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~ 214 (551)
++++|...|+++.+ | +..+|..+..++.+.|++++|+..|+++.+. .|+ ...+..+...+...|++++|...+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998764 4 4568999999999999999999999999875 454 4456677788889999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048830 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291 (551)
Q Consensus 215 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (551)
.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|+..|++..... +.+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 999875 34578899999999999999999999998863 467789999999999999999999999998853 2346
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGS 367 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~ 367 (551)
.++..+..++...|++++|...|+++.+. .| +..+|..++.+|.+.|++++|.+.|++++. .+..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 88889999999999999999999999763 45 567899999999999999999999988543 388999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+...|++++|...++++++..|+++.++..++.+|.+.|++++|...++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999976
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=8.9e-29 Score=253.11 Aligned_cols=211 Identities=9% Similarity=0.006 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHcCCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhcc
Q 048830 71 QAIFYYNHMLMASLSRPDT-FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149 (551)
Q Consensus 71 ~A~~l~~~m~~~~~~~pd~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 149 (551)
.+..+.+++.+.+.. +.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~-~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQ-QSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred hHHHHHHHHHHhccc-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 455666777777665 433 457888999999999999999999999999999999999999999887764432
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHH
Q 048830 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229 (551)
Q Consensus 150 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 229 (551)
.+.+..++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+||
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2345578899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 048830 230 ALVDMYAKCGNLDSAFCVFSRMR----KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304 (551)
Q Consensus 230 ~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 304 (551)
+||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999996 4899999999999999999999999999999999999999999999998764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.7e-28 Score=251.04 Aligned_cols=197 Identities=14% Similarity=0.172 Sum_probs=176.1
Q ss_pred HHHHhccCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC---------hHH
Q 048830 143 ARSVFDNMPE-----RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA---------LNM 208 (551)
Q Consensus 143 A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---------~~~ 208 (551)
+..+.+++.+ .....++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4444455543 12346888999999999999999999999999999999999999999987654 689
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR----KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999996 48999999999999999999999999999999
Q ss_pred cCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhc
Q 048830 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340 (551)
Q Consensus 285 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 340 (551)
.|+.||..||+.||.+|++.|++++|.++|++|.+. +..|+..||+.++..+...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999776 9999999999999998753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=8.1e-24 Score=219.52 Aligned_cols=392 Identities=9% Similarity=-0.074 Sum_probs=318.7
Q ss_pred ccHHHHHHHHHHcCCCCChHHHHHHHhcCC--CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 048830 20 EIHGEWLLNSYAISVSSSLSYAQLLFNQIQ--NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97 (551)
Q Consensus 20 ~~~~~~li~~~~~~~~g~~~~A~~lf~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~ 97 (551)
...+..+...|.+. |++++|...|+++. .|+..+|..+..++.+.|++++|+..|+++.+.++ .+..++..+..
T Consensus 6 a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRN--KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--HHHHHHHHHHH
Confidence 34566677888898 99999999999875 47899999999999999999999999999998874 46678999999
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHh------------------------------
Q 048830 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF------------------------------ 147 (551)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~------------------------------ 147 (551)
++...|++++|...|+.+.+.+ +++......++..+.+......+.+.+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999998875 334444444444433322222221111
Q ss_pred --------ccCC---------CC-ChhHHHHHHHHHHh---cCChHHHHHHHHHhhh-----CCc--------ccCHHHH
Q 048830 148 --------DNMP---------ER-DLVSWNSIISCYTQ---ASFHLEALKLYERMRF-----EDV--------GLDGFTL 193 (551)
Q Consensus 148 --------~~m~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--------~p~~~t~ 193 (551)
.... .| +...+......+.. .|++++|+..|+++.+ ..- +.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111 01 14445555555554 8999999999999887 311 2234577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcC
Q 048830 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHG 270 (551)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 270 (551)
..+...+...|++++|...++.+.+.... ..++..+..+|...|++++|.+.|+++.+ .+..+|..+...|...|
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 78888999999999999999999997644 88899999999999999999999998764 46778999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHH
Q 048830 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350 (551)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 350 (551)
++++|+..|+++.... +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999863 335678888999999999999999999999764 2235778899999999999999999999
Q ss_pred hhcCCC---C------HHHHHHHHHHHHh---cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 351 NTSSPS---D------PVLWRTLLGSCKI---HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 351 ~~~~~~---~------~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
++++.. + ...|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|...++++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 885543 2 4489999999999 999999999999999999999999999999999999999999999998
Q ss_pred HhC
Q 048830 419 KSN 421 (551)
Q Consensus 419 ~~~ 421 (551)
.+.
T Consensus 476 ~~~ 478 (514)
T 2gw1_A 476 ADL 478 (514)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.4e-23 Score=214.18 Aligned_cols=335 Identities=9% Similarity=0.042 Sum_probs=260.9
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 048830 51 PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130 (551)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 130 (551)
.+...|..+...+.+.|++++|+.+|+++....+ .+..++..+..++...|++++|...++.+++.+ +.+..++..+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3567788888888889999999999988887654 467788888888888888889988888888875 4567777888
Q ss_pred HHHHHhCCCHHHHHHHhccCCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcC
Q 048830 131 MRGYAANGVIEAARSVFDNMPE--RD-L---VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204 (551)
Q Consensus 131 i~~y~~~g~~~~A~~~~~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 204 (551)
..+|.+.|++++|.+.|+++.+ |+ . .+|..++..+...+ +..+...+...|
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~ 157 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcC
Confidence 8888888888888888877754 22 2 45555554422111 122233455677
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQ 281 (551)
Q Consensus 205 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (551)
++++|...++.+.+.. +.+..++..++.+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|++
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777777777654 34667788888888888888888888888753 4678888888999999999999999998
Q ss_pred HHHcCCCCCHh-hHHHH------------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----ccchhhhhHHHhhcCCH
Q 048830 282 MLMAGFHPDSI-TFLGL------------LCGCSHQGLVEEGVEYFHMMVSRYNLKPG-----IKHYGCLVDLYGRAGKL 343 (551)
Q Consensus 282 m~~~g~~p~~~-t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~ 343 (551)
+... .|+.. .+..+ ...|.+.|++++|..+|+.+.+. .|+ ..++..++.++.+.|++
T Consensus 237 ~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 237 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 8864 44443 33333 78889999999999999999864 444 45788999999999999
Q ss_pred HHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH------------HHhhhcC--
Q 048830 344 EKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA------------TIYACTK-- 406 (551)
Q Consensus 344 ~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-- 406 (551)
++|.+.++++++ .+..+|..+..+|...|++++|...++++++++|+++..+..++ +.|...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 999999998553 38899999999999999999999999999999999999999998 5577677
Q ss_pred ---ChhHHHHHHHH
Q 048830 407 ---DEEGVARTRKL 417 (551)
Q Consensus 407 ---~~~~a~~~~~~ 417 (551)
+.+++.+.+++
T Consensus 392 ~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 392 RNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 55666777665
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.8e-23 Score=215.47 Aligned_cols=374 Identities=9% Similarity=-0.058 Sum_probs=298.4
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~ 93 (551)
.|++.++..+...|.+. |++++|...|+++. +.+..+|..+..+|...|++++|+..|+++...+. ++.....
T Consensus 36 ~p~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~ 111 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSV--GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD--FNDASIE 111 (514)
T ss_dssp CCCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS--CCGGGTH
T ss_pred CccHHHHHhHHHHHHHH--hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CccchHH
Confidence 37999999999999999 99999999999764 45778999999999999999999999999998875 4555555
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHh-----------------------------------CC---------CCChhHHHH
Q 048830 94 FTLKACERVKALNKCQELHGFVIRS-----------------------------------GY---------ERCVVVSTN 129 (551)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~-----------------------------------g~---------~~~~~~~~~ 129 (551)
.++..+........+.+.+..+... .. +.+...+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (514)
T 2gw1_A 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELM 191 (514)
T ss_dssp HHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHH
Confidence 5554444332222222222111000 00 112444444
Q ss_pred HHHHHHh---CCCHHHHHHHhccCCC----------------C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccC
Q 048830 130 LMRGYAA---NGVIEAARSVFDNMPE----------------R-DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189 (551)
Q Consensus 130 li~~y~~---~g~~~~A~~~~~~m~~----------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 189 (551)
+...+.. .|++++|...|+++.+ | +..+|..+...+...|++++|+..|+++.+.. |+
T Consensus 192 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~ 269 (514)
T 2gw1_A 192 NGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PR 269 (514)
T ss_dssp HHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cc
Confidence 5555554 8999999999987644 1 34578889999999999999999999998754 44
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHH
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---KRDVLSWNSMIVGY 266 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 266 (551)
...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++. ..+..+|..+...|
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHH
Confidence 7788889999999999999999999998864 3467789999999999999999999999875 24677899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhh---
Q 048830 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGR--- 339 (551)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~--- 339 (551)
...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...-.++ ...+..+...|..
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999998863 335678888999999999999999999999764222222 3378899999999
Q ss_pred cCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 340 AGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 340 ~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
.|++++|.+.+++++.. +..+|..+...+...|++++|...++++++++|.++..+..+
T Consensus 428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999885433 888999999999999999999999999999999988777665
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=7.5e-22 Score=201.24 Aligned_cols=362 Identities=12% Similarity=0.020 Sum_probs=227.0
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ 94 (551)
.++..+..+...|.+. |++++|..+|+++. +.+..+|..+...|...|++++|+..|+++.+.++ .+..++..
T Consensus 24 ~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~ 99 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAA--GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM--DFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHHHHHH
Confidence 4667889999999999 99999999999764 45788999999999999999999999999999875 46788999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCCh
Q 048830 95 TLKACERVKALNKCQELHGFVIRSGYERCV---VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171 (551)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 171 (551)
+..++...|++++|...++.+.+.. +.+. ..+..++..+.. ..+..+...+...|++
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCH
Confidence 9999999999999999999998753 3344 566666554211 1122223334444444
Q ss_pred HHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 048830 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 172 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 251 (551)
++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..++.+|.+.|++++|...|+++
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444321 2233344444444444444444444444444432 223444455555555555555555555544
Q ss_pred CC---CCHhHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHhccCCHHHHH
Q 048830 252 RK---RDVLSWNSM------------IVGYGVHGRGDEAISFFKQMLMAGFHPD-----SITFLGLLCGCSHQGLVEEGV 311 (551)
Q Consensus 252 ~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~ 311 (551)
.+ .+...+..+ ...+...|++++|+..|+++... .|+ ...+..+..++.+.|++++|.
T Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 31 122223222 56666667777777777776663 333 235566666667777777777
Q ss_pred HHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHH------------HHhcC---
Q 048830 312 EYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGS------------CKIHR--- 372 (551)
Q Consensus 312 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~------------~~~~g--- 372 (551)
..++.+.+. .| +...|..+..+|...|++++|.+.+++++.. +...+..+..+ |...|
T Consensus 316 ~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 316 RVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 777766542 23 4566666777777777777777777664433 55555555522 33333
Q ss_pred --cHHHHHHHHHH-HHhhcCCCcc----------hHHHHHHHhhhcCChhH
Q 048830 373 --NVEIGEIAMKN-LVQLEAASAG----------DYVLLATIYACTKDEEG 410 (551)
Q Consensus 373 --~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 410 (551)
+.+++.+.+++ .++..|++.. .+..+..+|...|+.+.
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 56777888886 6677776422 44556666666665544
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.3e-21 Score=204.25 Aligned_cols=387 Identities=9% Similarity=0.006 Sum_probs=295.4
Q ss_pred ccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHH
Q 048830 20 EIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96 (551)
Q Consensus 20 ~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll 96 (551)
...+..+...+.+. |++++|...|+++. +.+..+|..+..+|.+.|++++|+..|+++...++ .+..++..+.
T Consensus 25 a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTA--KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHH
Confidence 34566677778888 88888888887653 35677888888888888888888888888887764 4667777888
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCC----------Chh----------
Q 048830 97 KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER----------DLV---------- 156 (551)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----------~~~---------- 156 (551)
.++...|++++|...++ ... ..|+. ....+..+...+....|...++++... +..
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLS--LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHH-HHh--cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 88888888888888885 322 22222 222344555556667777777666431 111
Q ss_pred --------------------HHHHHHHHHHh--------cCChHHHHHHHHHhhhCCcccC--------HHHHHHHHHHH
Q 048830 157 --------------------SWNSIISCYTQ--------ASFHLEALKLYERMRFEDVGLD--------GFTLVCLLSSC 200 (551)
Q Consensus 157 --------------------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~--------~~t~~~ll~~~ 200 (551)
.+..+...+.. .|++++|+.+|+++.+.. |+ ..++..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHH
Confidence 12222222211 247899999999998653 43 23566677788
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 048830 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAIS 277 (551)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 277 (551)
...|++++|...+..+.+.. |+..++..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|+.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 88999999999999999975 4578889999999999999999999998753 467899999999999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-
Q 048830 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS- 356 (551)
Q Consensus 278 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 356 (551)
.|+++.... +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|...|++++|.+.|++++..
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999864 334578888999999999999999999999864 2335678899999999999999999999885432
Q ss_pred --------CHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 357 --------DPVLWRTLLGSCKIH----------RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 357 --------~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
....+..+...+... |++++|...++++++.+|+++.++..++.+|...|++++|.+.++++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333455556777777 99999999999999999999999999999999999999999999998
Q ss_pred HhCC
Q 048830 419 KSNG 422 (551)
Q Consensus 419 ~~~g 422 (551)
.+..
T Consensus 489 l~~~ 492 (537)
T 3fp2_A 489 AILA 492 (537)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 7643
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=8.4e-21 Score=198.04 Aligned_cols=366 Identities=10% Similarity=-0.013 Sum_probs=281.3
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~ 93 (551)
+.++..+..+...|.+. |++++|...|++.. +.+..+|..+...+...|++++|+..|+. .... |+...
T Consensus 56 p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~---~~~~~-- 127 (537)
T 3fp2_A 56 PNEPVFYSNISACYIST--GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV-LSLN---GDFDG-- 127 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HC------------
T ss_pred CCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHH-HhcC---CCCCh--
Confidence 34778899999999999 99999999999764 45788999999999999999999999963 3333 33221
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHh------CCCCChh------------------------------HHHHHHHHHHhC
Q 048830 94 FTLKACERVKALNKCQELHGFVIRS------GYERCVV------------------------------VSTNLMRGYAAN 137 (551)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~------g~~~~~~------------------------------~~~~li~~y~~~ 137 (551)
..+..+...+....|...+..+.+. ...|+.. ....+...+...
T Consensus 128 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 207 (537)
T 3fp2_A 128 ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207 (537)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhh
Confidence 1222333444556777777776432 0111111 233333333332
Q ss_pred --------CCHHHHHHHhccCCC--CC--------hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHH
Q 048830 138 --------GVIEAARSVFDNMPE--RD--------LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199 (551)
Q Consensus 138 --------g~~~~A~~~~~~m~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 199 (551)
|++++|..+|+++.+ |+ ..+|..+...+...|++++|+..|++..+. .|+...+..+...
T Consensus 208 ~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 285 (537)
T 3fp2_A 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALT 285 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHH
Confidence 478999999988865 33 235777778899999999999999999874 5667888889999
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHH
Q 048830 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAI 276 (551)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 276 (551)
+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|+
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999875 34678899999999999999999999998753 45778999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccch------hhhhHHHhhc----------
Q 048830 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY------GCLVDLYGRA---------- 340 (551)
Q Consensus 277 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~------~~li~~~~~~---------- 340 (551)
..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...- +...+ ..+..+|.+.
T Consensus 365 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 365 AFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV--QEKIHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--CSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc--chhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 9999999863 344678888999999999999999999998765211 22222 2334677777
Q ss_pred CCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 341 GKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 341 g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
|++++|...|++++.. +..+|..+...+...|++++|...+++++++.|.++....
T Consensus 442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999985533 8899999999999999999999999999999999776544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.4e-19 Score=177.99 Aligned_cols=325 Identities=8% Similarity=-0.010 Sum_probs=223.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 048830 52 QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131 (551)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 131 (551)
|+..|..+...+...|++++|+..|+++....+ .+..++..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 345677777788888888888888888877664 456677777777888888888888888877763 34556667777
Q ss_pred HHHHhCCCHHHHHHHhccCCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC
Q 048830 132 RGYAANGVIEAARSVFDNMPE--R----DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205 (551)
Q Consensus 132 ~~y~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 205 (551)
.+|.+.|++++|...|++..+ | +...+..+...+. ...+..+...+...|+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 777777777777777766644 2 1222222211100 0112223455667777
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 206 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
+++|...+..+.+.. +.+..++..+..+|...|++++|...|+++.+ .+..+|..+...|...|++++|...|++.
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777654 33566777777888888888888888877653 35677778888888888888888888887
Q ss_pred HHcCCCCCH-hhHH------------HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--ccchhhhhHHHhhcCCHHHHH
Q 048830 283 LMAGFHPDS-ITFL------------GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG--IKHYGCLVDLYGRAGKLEKAL 347 (551)
Q Consensus 283 ~~~g~~p~~-~t~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 347 (551)
.+.. |+. ..+. .+...+...|++++|...++.+.+...-.|. ...+..+..+|...|++++|.
T Consensus 215 ~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7642 332 2222 2355677888888888888888764211111 123455777888888888888
Q ss_pred HHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhc
Q 048830 348 EVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405 (551)
Q Consensus 348 ~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 405 (551)
+.+++++.. +..+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 888774432 7788888888888888888888888888888888888777776665443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=7.7e-19 Score=172.66 Aligned_cols=303 Identities=9% Similarity=-0.061 Sum_probs=234.0
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHH
Q 048830 89 TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCY 165 (551)
Q Consensus 89 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 165 (551)
...+..+...+...|++++|...++.+++.. +.++.++..+..+|...|++++|...|+++.+ .+..+|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556667777778888888888888887764 45567777777778888888888887776643 3556777777777
Q ss_pred HhcCChHHHHHHHHHhhhCCccc---CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 048830 166 TQASFHLEALKLYERMRFEDVGL---DGF-TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241 (551)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~~~~p---~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 241 (551)
...|++++|+..|++..+. .| +.. .+..+.... . ...+..+...|...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 7778888888887777654 34 211 111111110 0 11233456788999999
Q ss_pred HHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 242 DSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 242 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
++|.+.|+++.+ .+...|..+...+...|++++|+..++++.... +.+..++..+...+...|++++|...++.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998753 577889999999999999999999999999863 4467888899999999999999999999997
Q ss_pred HhcCCCCC-ccchh------------hhhHHHhhcCCHHHHHHHHhhcCCC---CH----HHHHHHHHHHHhcCcHHHHH
Q 048830 319 SRYNLKPG-IKHYG------------CLVDLYGRAGKLEKALEVINTSSPS---DP----VLWRTLLGSCKIHRNVEIGE 378 (551)
Q Consensus 319 ~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~ll~~~~~~g~~~~a~ 378 (551)
+. .|+ ...+. .+...+.+.|++++|.+.+++++.. +. ..+..+...+...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 64 343 23222 3367789999999999999885543 44 33556778999999999999
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 379 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
..++++++.+|+++..+..++.+|...|++++|...++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998764
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=5.5e-20 Score=179.73 Aligned_cols=287 Identities=16% Similarity=0.108 Sum_probs=142.2
Q ss_pred cCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHH
Q 048830 32 ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111 (551)
Q Consensus 32 ~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~ 111 (551)
+. |++++|.+.+++++.|+ +|+.|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+
T Consensus 15 ~~--~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HI--GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hc--cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66 89999999999997664 9999999999999999999999652 7788999999999999999999998
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH
Q 048830 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191 (551)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 191 (551)
++...+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ .
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 8888774 45688899999999999999999988864 77789999999999999999999999987 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC
Q 048830 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271 (551)
Q Consensus 192 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (551)
.|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 7999999999999999999999987 378999999999999999999988877755 455445578999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC------CccchhhhhHHHhhcCCHHH
Q 048830 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP------GIKHYGCLVDLYGRAGKLEK 345 (551)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 345 (551)
+++|+.+++...... +-....|+.|.-+|++- ++++..+.++...++-+++| +...|.-++..|...++++.
T Consensus 223 ~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 223 FEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 999999999988643 33345666666666653 34444444443334446666 58899999999999999999
Q ss_pred HHHHHhh
Q 048830 346 ALEVINT 352 (551)
Q Consensus 346 A~~~~~~ 352 (551)
|....-+
T Consensus 301 A~~tm~~ 307 (449)
T 1b89_A 301 AIITMMN 307 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887766
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=4.8e-19 Score=172.16 Aligned_cols=283 Identities=12% Similarity=0.007 Sum_probs=170.9
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHH
Q 048830 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199 (551)
Q Consensus 123 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 199 (551)
++.++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 333444444444455555555555544432 223334444455555555555555555554421 1233444445555
Q ss_pred HHhcC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHH
Q 048830 200 CAHVG-ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEA 275 (551)
Q Consensus 200 ~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 275 (551)
+...| ++++|...++.+.+.. +.+...+..+..+|...|++++|.+.|+++.+ .+..++..+...|...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 55555 5555555555555433 22344555566666666666666666665432 2345555566666666677777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcC-------CCCCccchhhhhHHHhhcCCHHHHHH
Q 048830 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN-------LKPGIKHYGCLVDLYGRAGKLEKALE 348 (551)
Q Consensus 276 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (551)
...|+++.+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+..+|...|++++|.+
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77776666542 23445666666667777777777777776655321 12235677777788888888888888
Q ss_pred HHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh-hhcCCh
Q 048830 349 VINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY-ACTKDE 408 (551)
Q Consensus 349 ~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 408 (551)
.+++++.. +...|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 77764432 7788888888888889999999999999999998888888888887 455554
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=3.8e-17 Score=168.42 Aligned_cols=364 Identities=12% Similarity=0.020 Sum_probs=250.4
Q ss_pred CccHHHHHHHHHHc----CCCCChHHHHHHHhcCC-CCChhhHHHHHHHHHc----CCChhHHHHHHHHHHHcCCCCCCh
Q 048830 19 HEIHGEWLLNSYAI----SVSSSLSYAQLLFNQIQ-NPQTQAWNSLIRAFAQ----SLSPLQAIFYYNHMLMASLSRPDT 89 (551)
Q Consensus 19 ~~~~~~~li~~~~~----~~~g~~~~A~~lf~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~pd~ 89 (551)
++..+..|-..|.. . ++++.|...|++.. ..+..++..|...|.. .+++++|+..|++....+ +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~--~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETT--KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CH
T ss_pred CHHHHHHHHHHHHcCCCCC--cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CH
Confidence 55556666666666 5 77777877776543 3456677777777777 777788888887777653 34
Q ss_pred hhHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----CCCHHHHHHHhccCCC-CChhHHHH
Q 048830 90 FTFTFTLKACER----VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA----NGVIEAARSVFDNMPE-RDLVSWNS 160 (551)
Q Consensus 90 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~ 160 (551)
..+..+...+.. .+++++|...|++..+.| ++..+..|..+|.. .++.++|.+.|++..+ .+..++..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 555566666666 677788888887777655 45566667777776 6777888877776543 45667777
Q ss_pred HHHHHHh----cCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048830 161 IISCYTQ----ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH----VGALNMGIFLHRIACEMGFVESVYVGNALV 232 (551)
Q Consensus 161 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 232 (551)
|...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...++...+.| +...+..|.
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 262 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLG 262 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 7777776 677888888887776654 34455556666654 667778887777777654 345666667
Q ss_pred HHHHh----cCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 233 DMYAK----CGNLDSAFCVFSRMRK-RDVLSWNSMIVGYGVH-----GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 233 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
.+|.. .++.++|.+.|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...|.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 77776 7778888888777654 4566667777777766 77888888888777754 3445555666665
Q ss_pred ccC---CHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh----cCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----
Q 048830 303 HQG---LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR----AGKLEKALEVINTSSPS-DPVLWRTLLGSCKI---- 370 (551)
Q Consensus 303 ~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~---- 370 (551)
..| +.++|..+|++..+. .+...+..|..+|.. .+++++|.+.|+++... ++..+..|...|..
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred hCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCC
Confidence 545 677777777777653 345666777777776 77788888888776655 77777777777776
Q ss_pred cCcHHHHHHHHHHHHhhcCC---CcchHHHHHHHhhh
Q 048830 371 HRNVEIGEIAMKNLVQLEAA---SAGDYVLLATIYAC 404 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 404 (551)
.++.++|...|+++.+.+|+ ++.....|+.++..
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 67888888888888877743 56666666666554
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=2.3e-16 Score=162.54 Aligned_cols=352 Identities=13% Similarity=0.032 Sum_probs=301.0
Q ss_pred CCChhhHHHHHHHHHc----CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc----cCChHHHHHHHHHHHHhCCC
Q 048830 50 NPQTQAWNSLIRAFAQ----SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER----VKALNKCQELHGFVIRSGYE 121 (551)
Q Consensus 50 ~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~ 121 (551)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|...|.+..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 4578888888888888 899999999999998864 55677778888888 899999999999998865
Q ss_pred CChhHHHHHHHHHHh----CCCHHHHHHHhccCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHhhhCCcccCHHH
Q 048830 122 RCVVVSTNLMRGYAA----NGVIEAARSVFDNMPE-RDLVSWNSIISCYTQ----ASFHLEALKLYERMRFEDVGLDGFT 192 (551)
Q Consensus 122 ~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t 192 (551)
++..+..|..+|.. .+++++|.+.|++..+ .+..++..|...|.. .+++++|+..|++..+.| +...
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 66777889999998 8899999999998765 467788889998987 789999999999998865 5677
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCHhHHHHHH
Q 048830 193 LVCLLSSCAH----VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK----CGNLDSAFCVFSRMRK-RDVLSWNSMI 263 (551)
Q Consensus 193 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 263 (551)
+..+...+.. .++.++|...+....+.| +...+..|..+|.. .+++++|.++|++..+ .+..++..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7778888877 899999999999999875 56778888889986 8999999999998764 5677888888
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcCCCCCccchhhhh
Q 048830 264 VGYGV----HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ-----GLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334 (551)
Q Consensus 264 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 334 (551)
..|.. .++.++|+..|++..+.| +...+..+...|... ++.++|..+|++..+. + +...+..|.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 335 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLG 335 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHH
Confidence 88888 899999999999998765 455666777777776 8999999999999764 2 456777888
Q ss_pred HHHhhcC---CHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh--
Q 048830 335 DLYGRAG---KLEKALEVINTSSPS-DPVLWRTLLGSCKI----HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC-- 404 (551)
Q Consensus 335 ~~~~~~g---~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 404 (551)
.+|...| ++++|.++|+++... ++..+..|...|.. .++.++|...++++.+.+ ++.++..|+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888766 899999999997776 89999999999998 899999999999998865 57899999999999
Q ss_pred --cCChhHHHHHHHHHHhCCC
Q 048830 405 --TKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 405 --~g~~~~a~~~~~~m~~~g~ 423 (551)
.++.++|...+++..+.+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999987663
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.3e-16 Score=166.24 Aligned_cols=393 Identities=10% Similarity=0.041 Sum_probs=292.2
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~ 93 (551)
+.|...|..++. +.+. |++++|+.+|+++. +.+...|..++..+.+.|++++|..+|++.+... |+...|.
T Consensus 10 P~~~~~w~~l~~-~~~~--~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~ 83 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQN--QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWK 83 (530)
T ss_dssp TTCHHHHHHHHH-HHHS--SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHH
T ss_pred CCCHHHHHHHHH-HHHh--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHH
Confidence 347778999998 4778 99999999999875 3467789999999999999999999999998764 7766676
Q ss_pred HHHHHH-hccCChHHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHh---------CCCHHHHHHHhccCCC-CCh-
Q 048830 94 FTLKAC-ERVKALNKCQE----LHGFVIRS-GYER-CVVVSTNLMRGYAA---------NGVIEAARSVFDNMPE-RDL- 155 (551)
Q Consensus 94 ~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~~~~m~~-~~~- 155 (551)
..+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|.++|++..+ |+.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh
Confidence 666433 34577766655 77776654 5443 56678888877665 6889999999998765 332
Q ss_pred --hHHHHHHHHH-------------HhcCChHHHHHHHHHh------hhCC---cccCH--------HHHHHHHHHHHhc
Q 048830 156 --VSWNSIISCY-------------TQASFHLEALKLYERM------RFED---VGLDG--------FTLVCLLSSCAHV 203 (551)
Q Consensus 156 --~~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~~---~~p~~--------~t~~~ll~~~~~~ 203 (551)
..|....... ...+++..|..++..+ .+.. ++|+. ..|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 3344322211 1245677787777652 2221 34432 2333333322221
Q ss_pred ----CCh----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHHhcCC---C-CHh
Q 048830 204 ----GAL----NMGIFLHRIACEMGFVESVYVGNALVDMYAK-------CGNLD-------SAFCVFSRMRK---R-DVL 257 (551)
Q Consensus 204 ----~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~ 257 (551)
++. +.+..+++++++.. +.+..+|..++..+.+ .|+++ +|.++|++..+ | +..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 222 36778888888863 4467888888888876 79987 99999998764 3 578
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhh
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS--ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLV 334 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 334 (551)
.|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|+...+. .|+ ...|...+
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a 397 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHH
Confidence 8999999999999999999999999984 5653 47888888888999999999999999753 343 33333322
Q ss_pred HH-HhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc----hHHHHHHHhhhcC
Q 048830 335 DL-YGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG----DYVLLATIYACTK 406 (551)
Q Consensus 335 ~~-~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g 406 (551)
.+ +...|+.++|..+|++++.. ++..|..++..+...|+.+.|..+|+++++..|.+|. .|...+......|
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 22 34689999999999986644 8999999999999999999999999999998877665 7777888888899
Q ss_pred ChhHHHHHHHHHHhC
Q 048830 407 DEEGVARTRKLIKSN 421 (551)
Q Consensus 407 ~~~~a~~~~~~m~~~ 421 (551)
+.+.+..+.+++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988653
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.5e-17 Score=159.97 Aligned_cols=284 Identities=13% Similarity=0.005 Sum_probs=182.5
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 048830 51 PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130 (551)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 130 (551)
.+...+..+...+...|++++|+.+|+++....+ .+...+..++..+...|++++|...+..+.+.. +.+..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4556666777777777888888888877777654 344556666677777777777777777777653 3455566666
Q ss_pred HHHHHhCC-CHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCCh
Q 048830 131 MRGYAANG-VIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206 (551)
Q Consensus 131 i~~y~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 206 (551)
...|...| ++++|...|++..+ .+..+|..+...+...|++++|+..|++..+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----------------------- 153 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ----------------------- 153 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----------------------
Confidence 66666666 66666666655433 2344555555555555555555555555544
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
.. +.+...+..+...|...|++++|.+.|++..+ .+..+|..+...+...|++++|+..|+++.
T Consensus 154 ------------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 154 ------------LM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp ------------HT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------hc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32 11233444455566666666666666665442 345666667777777777777777777766
Q ss_pred HcC--------CCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC
Q 048830 284 MAG--------FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355 (551)
Q Consensus 284 ~~g--------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 355 (551)
... .+.+..++..+...+...|++++|...++.+.+. .+.+...+..+..+|.+.|++++|.+.+++++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 531 1223457777777888888888888888877653 122566777888888888888888888887655
Q ss_pred C---CHHHHHHHHHHH-HhcCcHH
Q 048830 356 S---DPVLWRTLLGSC-KIHRNVE 375 (551)
Q Consensus 356 ~---~~~~~~~ll~~~-~~~g~~~ 375 (551)
. +...+..+..++ ...|+.+
T Consensus 299 ~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 299 LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cCCCchHHHHHHHHHHHHHhCchh
Confidence 4 677777777766 4555543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=2.2e-18 Score=170.44 Aligned_cols=279 Identities=12% Similarity=-0.042 Sum_probs=217.5
Q ss_pred HHhCCCHHHHHH-HhccCCC-----C--ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC
Q 048830 134 YAANGVIEAARS-VFDNMPE-----R--DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205 (551)
Q Consensus 134 y~~~g~~~~A~~-~~~~m~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 205 (551)
|.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334577788877 7765443 1 34567888888888899999999888888753 3456677888888888899
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHH---------------HHHHHH
Q 048830 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DVLSWNS---------------MIVGYG 267 (551)
Q Consensus 206 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 267 (551)
+++|...++.+.+.. +.+..++..+..+|...|++++|.+.|+++.+ | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999998888888875 34677888888889999999999988887653 2 2222211 133334
Q ss_pred hcCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHH
Q 048830 268 VHGRGDEAISFFKQMLMAGFH-PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEK 345 (551)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 345 (551)
..|++++|+..|+++...... ++..++..+...+...|++++|...|+.+.+. .| +...+..+..+|.+.|++++
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHH
Confidence 889999999999999986322 14788899999999999999999999999764 34 57789999999999999999
Q ss_pred HHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC-----------cchHHHHHHHhhhcCChhHH
Q 048830 346 ALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS-----------AGDYVLLATIYACTKDEEGV 411 (551)
Q Consensus 346 A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a 411 (551)
|.+.|++++.. +..+|..+...+...|++++|...+++++++.|++ +.+|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999885533 88899999999999999999999999999999887 78999999999999999999
Q ss_pred HHHHHH
Q 048830 412 ARTRKL 417 (551)
Q Consensus 412 ~~~~~~ 417 (551)
..++++
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 998763
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=4.9e-18 Score=167.92 Aligned_cols=280 Identities=14% Similarity=0.031 Sum_probs=175.5
Q ss_pred CCChhHHHH-HHHHHHHcCCCCC--ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 048830 66 SLSPLQAIF-YYNHMLMASLSRP--DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142 (551)
Q Consensus 66 ~g~~~~A~~-l~~~m~~~~~~~p--d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 142 (551)
.|++++|++ .|++........| +...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 6655443322112 34456666666777777777777777776653 4456666667777777777777
Q ss_pred HHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH-HHHH---------------HHHHHHhc
Q 048830 143 ARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF-TLVC---------------LLSSCAHV 203 (551)
Q Consensus 143 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~---------------ll~~~~~~ 203 (551)
|...|+++.+ .+..+|..+...|...|++++|+..|+++.+.. |+.. .+.. .+..+...
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 7777765542 355667777777777777777777777776543 2211 1110 23333377
Q ss_pred CChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 048830 204 GALNMGIFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFF 279 (551)
Q Consensus 204 ~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 279 (551)
|++++|...++.+.+..... +..++..+..+|.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78888888888877764321 466777778888888888888888777642 35667777777788888888888888
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC------------ccchhhhhHHHhhcCCHHHHH
Q 048830 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG------------IKHYGCLVDLYGRAGKLEKAL 347 (551)
Q Consensus 280 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~------------~~~~~~li~~~~~~g~~~~A~ 347 (551)
+++.+.. +.+..++..+..++...|++++|...|+.+.+. .|+ ..+|..+..+|...|+.++|.
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM---QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 8777652 334566777777777788888888777777643 221 355666666666666666666
Q ss_pred HHHhh
Q 048830 348 EVINT 352 (551)
Q Consensus 348 ~~~~~ 352 (551)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 66554
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=6.1e-18 Score=167.28 Aligned_cols=260 Identities=12% Similarity=-0.052 Sum_probs=213.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048830 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233 (551)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 233 (551)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45668889999999999999999999988753 3467788889999999999999999999998875 345788999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHhhHHHHHH
Q 048830 234 MYAKCGNLDSAFCVFSRMRKRD-------------VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH-PDSITFLGLLC 299 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 299 (551)
+|...|++++|.+.|+++.+.+ ...+..+...+...|++++|+..|+++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999876421 223345578899999999999999999986422 15788999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHH
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
.+...|++++|...|+++.+. .+.+..+|..+..+|...|++++|.+.|++++.. +..+|..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999864 2336788999999999999999999999885543 78999999999999999999
Q ss_pred HHHHHHHHHhhcCC------------CcchHHHHHHHhhhcCChhHHHHHHHH
Q 048830 377 GEIAMKNLVQLEAA------------SAGDYVLLATIYACTKDEEGVARTRKL 417 (551)
Q Consensus 377 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 417 (551)
|...+++++++.|. +...+..++.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999877 367899999999999999998887654
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.1e-16 Score=163.98 Aligned_cols=368 Identities=12% Similarity=-0.037 Sum_probs=240.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHc-----C--CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC-----
Q 048830 52 QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA-----S--LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG----- 119 (551)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~--~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 119 (551)
....||.|...+...|++++|++.|++..+. + .......+|..+..+|...|++++|...++++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567899999999999999999999887542 1 110234578889999999999999999998887531
Q ss_pred -C-CCChhHHHHHHHHHHh--CCCHHHHHHHhccCCC--C-ChhHHHHHHHH---HHhcCChHHHHHHHHHhhhCCcccC
Q 048830 120 -Y-ERCVVVSTNLMRGYAA--NGVIEAARSVFDNMPE--R-DLVSWNSIISC---YTQASFHLEALKLYERMRFEDVGLD 189 (551)
Q Consensus 120 -~-~~~~~~~~~li~~y~~--~g~~~~A~~~~~~m~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p~ 189 (551)
. .....++..+..++.+ .+++++|+..|++..+ | +...+..+... +...++.++|++.|++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1 1234566666555554 4568999999988754 3 44555555544 345678888999988877643 234
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHH
Q 048830 190 GFTLVCLLSSCAH----VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSM 262 (551)
Q Consensus 190 ~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 262 (551)
...+..+...+.. .++.++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 4455555545544 456788999999888865 34577888899999999999999999988753 355667666
Q ss_pred HHHHHhc-------------------CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 048830 263 IVGYGVH-------------------GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323 (551)
Q Consensus 263 i~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (551)
...|... +..++|...|++..+.. +.+..++..+...+...|++++|...|++..+. ..
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~ 365 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-EL 365 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CC
Confidence 6655432 34667888888877753 334567888889999999999999999998753 22
Q ss_pred CCCc--cchhhhhH-HHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 324 KPGI--KHYGCLVD-LYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 324 ~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
.|.. ..+..+.. .+...|+.++|+..|++++.. +...+ .+..+.+..++++.++.+|+++.+|..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~---------~~~~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK---------EKMKDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH---------HHHHHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH---------HHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2211 12333333 234678999999999886655 22111 1233456677888889999999999999
Q ss_pred HHHhhhcCChhHHHHHHHHHHhCCCccCCceeEE
Q 048830 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWI 432 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 432 (551)
+.+|...|++++|.+.+++..+.+...+...+|+
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHCC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999988766555555664
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=5.8e-19 Score=172.53 Aligned_cols=280 Identities=11% Similarity=0.062 Sum_probs=124.8
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180 (551)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (551)
+.|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456677887777776 23347788888888888888888888654 5666788888888888888888886666
Q ss_pred hhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHH
Q 048830 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260 (551)
Q Consensus 181 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 260 (551)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+++.|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 5553 4556777788888888888888777764 366678888888888888888888888876 4788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhc
Q 048830 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340 (551)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 340 (551)
.++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHC
Confidence 8888888888888888888877 2677888888888888888888554332 223334455688888888
Q ss_pred CCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhhcC-----CCcchHHHHHHHhhhcCChhH
Q 048830 341 GKLEKALEVINTSSPS---DPVLWRTLLGSCKIH--RNVEIGEIAMKNLVQLEA-----ASAGDYVLLATIYACTKDEEG 410 (551)
Q Consensus 341 g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~ 410 (551)
|++++|..+++.++.. ....|+-|..+|.+. ++..+..++|..-+.+.| .++..|..+...|.+.+.|+.
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 8888888888887766 677777777777664 345555555554444555 567788888888888888888
Q ss_pred HHHH
Q 048830 411 VART 414 (551)
Q Consensus 411 a~~~ 414 (551)
|..+
T Consensus 301 A~~t 304 (449)
T 1b89_A 301 AIIT 304 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=2.7e-16 Score=149.91 Aligned_cols=268 Identities=10% Similarity=-0.066 Sum_probs=205.3
Q ss_pred HHhCCCHHHHHHHhccCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHH
Q 048830 134 YAANGVIEAARSVFDNMPERDL----VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209 (551)
Q Consensus 134 y~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 209 (551)
....|+++.|+..++.....+. .....+..+|...|++++|+..++. .-.|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 4456788888887776655332 2445567788888888888876543 1355666777777788888888888
Q ss_pred HHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048830 210 IFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288 (551)
Q Consensus 210 ~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (551)
.+.++.+...+..| +...+..+..+|...|++++|.+.|++ ..+...+..++..|.+.|++++|...|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 88888887766444 466677778899999999999999998 567889999999999999999999999999986 3
Q ss_pred CCHhhH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHH
Q 048830 289 PDSITF---LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWR 362 (551)
Q Consensus 289 p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 362 (551)
|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++++.. ++.+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 654321 12334445668999999999999875 3457888999999999999999999999886644 889999
Q ss_pred HHHHHHHhcCcHHH-HHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHH
Q 048830 363 TLLGSCKIHRNVEI-GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415 (551)
Q Consensus 363 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 415 (551)
.++..+...|+.++ +...++++++++|+++.+. +...+.+.++++..-|
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 99999999998875 6789999999999987644 4555566666555433
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=3.3e-15 Score=162.08 Aligned_cols=349 Identities=12% Similarity=0.035 Sum_probs=272.8
Q ss_pred CccHHHHHHHHHHcCCCCChHHHHHHHhcCC-CC-----ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhH
Q 048830 19 HEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ-NP-----QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92 (551)
Q Consensus 19 ~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~ 92 (551)
|+.--...+..|+.. |.+.+|.++++++. .| +...-|.++.+..+. +..+..+..++.. ....
T Consensus 984 ~PeeVs~~vKaf~~a--glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--------~~d~ 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTA--DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--------NYDA 1052 (1630)
T ss_pred CHHHhHHHHHHHHhC--CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--------hccH
Confidence 334445567788887 88888888888765 22 224455566666665 4455555555543 1223
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChH
Q 048830 93 TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172 (551)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 172 (551)
..+...|...|.+++|..+|++.. ......+.+ +-..+++++|.++.+++. +..+|..+..++...|+++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHH
Confidence 346677888999999999998852 122222323 237788999999998774 4678999999999999999
Q ss_pred HHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 173 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
+|++.|.+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++..... .
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N 1191 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h
Confidence 999999654 567788889999999999999999999988865 44445556999999999999655443 4
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhh
Q 048830 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332 (551)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 332 (551)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWke 1255 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKE 1255 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHH
Confidence 567778888999999999999999999985 37899999999999999999999876 35588999
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhc--CChhH
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT--KDEEG 410 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~ 410 (551)
+..++...|++..|...... +..++..+..++..|...|.+++|..++++.+.++|.+.+.|..|+.+|++. ++..+
T Consensus 1256 v~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999998876 6668888889999999999999999999999999999999998888888876 34555
Q ss_pred HHHHHH
Q 048830 411 VARTRK 416 (551)
Q Consensus 411 a~~~~~ 416 (551)
+.++|.
T Consensus 1335 hlk~f~ 1340 (1630)
T 1xi4_A 1335 HLELFW 1340 (1630)
T ss_pred HHHHHH
Confidence 555544
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=1.3e-17 Score=164.84 Aligned_cols=261 Identities=15% Similarity=-0.017 Sum_probs=175.2
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHH
Q 048830 88 DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISC 164 (551)
Q Consensus 88 d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 164 (551)
+...+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|+..|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457777777777788888888888877764 45677777788888888888888888777653 346678888888
Q ss_pred HHhcCChHHHHHHHHHhhhCCcccCH-----------HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-CchhHHHHHH
Q 048830 165 YTQASFHLEALKLYERMRFEDVGLDG-----------FTLVCLLSSCAHVGALNMGIFLHRIACEMGFV-ESVYVGNALV 232 (551)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~~~~p~~-----------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li 232 (551)
|...|++++|+..|+++.+.. |+. ..+..+...+...|++++|...++.+.+.... ++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888876632 322 22233466777788888888888888876432 1567777888
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHH
Q 048830 233 DMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309 (551)
Q Consensus 233 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 309 (551)
.+|.+.|++++|.+.|+++.+ .+..+|+.+...|...|++++|+..|+++.+.. +.+..++..+..+|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 888888888888888877642 456778888888888888888888888877752 2335677777788888888888
Q ss_pred HHHHHHHhHHhcCCC----------CCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 310 GVEYFHMMVSRYNLK----------PGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 310 a~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
|...|+++.+...-. .+...|..+..++...|+.+.|....++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 888888776531100 0134455555555555555555554444
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1.2e-15 Score=158.75 Aligned_cols=364 Identities=8% Similarity=0.018 Sum_probs=270.1
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 048830 50 NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN 129 (551)
Q Consensus 50 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 129 (551)
+.|...|..++. +.+.|++++|..+|+++.+..+ .+...|...+..+.+.|++++|..+|+++++. .|++..|..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFP--SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHH
Confidence 347889999998 5789999999999999998764 46668899999999999999999999999886 367778877
Q ss_pred HHH-HHHhCCCHHHHHH----HhccCC------CCChhHHHHHHHHHHh---------cCChHHHHHHHHHhhhCCcccC
Q 048830 130 LMR-GYAANGVIEAARS----VFDNMP------ERDLVSWNSIISCYTQ---------ASFHLEALKLYERMRFEDVGLD 189 (551)
Q Consensus 130 li~-~y~~~g~~~~A~~----~~~~m~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~ 189 (551)
.+. .....|+.+.|.+ +|+... .++...|...+..... .|++++|..+|++..+....+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 775 3346688777665 666542 1356788888876654 6899999999999987311111
Q ss_pred HHHHHHHHHHH-------------HhcCChHHHHHHHHHHHH------hC---CCCc--------hhHHHHHHHHHHhc-
Q 048830 190 GFTLVCLLSSC-------------AHVGALNMGIFLHRIACE------MG---FVES--------VYVGNALVDMYAKC- 238 (551)
Q Consensus 190 ~~t~~~ll~~~-------------~~~~~~~~a~~~~~~~~~------~g---~~~~--------~~~~~~li~~y~~~- 238 (551)
...|....... ...+.++.|..++..... .. ++|+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 23333222211 123456677766665322 11 2333 24555555433322
Q ss_pred ---CCH----HHHHHHHHhcCC---CCHhHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCC-CHhh
Q 048830 239 ---GNL----DSAFCVFSRMRK---RDVLSWNSMIVGYGV-------HGRGD-------EAISFFKQMLMAGFHP-DSIT 293 (551)
Q Consensus 239 ---g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p-~~~t 293 (551)
++. +.|..+|++... .+...|..++..+.+ .|+.+ +|..+|++.... +.| +...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHH
Confidence 232 367778887764 467889988888876 79987 899999998863 245 4677
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-c-cchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHH-
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-I-KHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGS- 367 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~- 367 (551)
+..++..+.+.|++++|..+|+.+++ +.|+ . ..|..++..+.+.|++++|.++|++++.. +...|...+..
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 88888899999999999999999985 4564 2 47888999999999999999999997765 33333333222
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
+...|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..++++....+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 3468999999999999999999999999999999999999999999999998754
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=5.8e-17 Score=157.13 Aligned_cols=257 Identities=9% Similarity=-0.049 Sum_probs=186.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 048830 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236 (551)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 236 (551)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 44555556666666666666666655432 2244455555566666666666666666666553 234556666666666
Q ss_pred hcCCHHHHHHHHHhcCC--C-CHhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048830 237 KCGNLDSAFCVFSRMRK--R-DVLSWNSM--------------IV-GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298 (551)
Q Consensus 237 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 298 (551)
..|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 66666666666666542 1 12222222 22 3677888999999999988763 33667888888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVE 375 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~ 375 (551)
..+...|++++|...++.+.+. .+.+...+..+...|...|++++|.+.+++++.. +..+|..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999998764 2235678889999999999999999999875433 7889999999999999999
Q ss_pred HHHHHHHHHHhhcCC------------CcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 376 IGEIAMKNLVQLEAA------------SAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 376 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
+|...++++++..|. ++..+..++.+|...|++++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999 7889999999999999999999988643
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.9e-16 Score=151.05 Aligned_cols=245 Identities=9% Similarity=-0.014 Sum_probs=202.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCcccCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 048830 162 ISCYTQASFHLEALKLYERMRFEDVGLDG--FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 239 (551)
|.-....|++..|+..+++.... .|+. .....+..+|...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999999887543 3443 3556678899999999999976643 23567788899999999999
Q ss_pred CHHHHHHHHHhcC----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 048830 240 NLDSAFCVFSRMR----KR-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314 (551)
Q Consensus 240 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 314 (551)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 566778888999999999999999987 456788889999999999999999999
Q ss_pred HHhHHhcCCCCCccc---hhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc
Q 048830 315 HMMVSRYNLKPGIKH---YGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388 (551)
Q Consensus 315 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 388 (551)
+.+.+. .|+... ...++..+...|++++|..+|++++. .++..|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999865 365321 12344555566999999999988543 399999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHhhhcCChhH-HHHHHHHHHhC
Q 048830 389 AASAGDYVLLATIYACTKDEEG-VARTRKLIKSN 421 (551)
Q Consensus 389 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 421 (551)
|+++.++..++.++...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 56888888763
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.9e-15 Score=154.83 Aligned_cols=364 Identities=8% Similarity=-0.052 Sum_probs=241.1
Q ss_pred CccHHHHHHHHHHcCCCCChHHHHHHHhcCC------------CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcC---
Q 048830 19 HEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ------------NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS--- 83 (551)
Q Consensus 19 ~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--- 83 (551)
....||.|-..|... |+.++|++.|++.. ....++|+.+...|...|++++|+..|++.....
T Consensus 50 ~a~~yn~Lg~~~~~~--G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLK--GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp CCHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 456799999999999 99999999997531 2356789999999999999999999998876531
Q ss_pred --CCCC-ChhhHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCCChhHHHHHHHH---HHhCCCHHHHHHHhccCCC---
Q 048830 84 --LSRP-DTFTFTFTLKACER--VKALNKCQELHGFVIRSGYERCVVVSTNLMRG---YAANGVIEAARSVFDNMPE--- 152 (551)
Q Consensus 84 --~~~p-d~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---y~~~g~~~~A~~~~~~m~~--- 152 (551)
...+ ...++.....++.. .+++++|...|++.++.. +.++..+..+..+ +...++.++|++.|++..+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1102 23456555555544 457899999999999875 4456666666555 3456777888888876543
Q ss_pred CChhHHHHHHHHHHh----cCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 048830 153 RDLVSWNSIISCYTQ----ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228 (551)
Q Consensus 153 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 228 (551)
.+..++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 455667666655554 467889999999887653 4456678889999999999999999999999875 3356677
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048830 229 NALVDMYAKC-------------------GNLDSAFCVFSRMR---KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286 (551)
Q Consensus 229 ~~li~~y~~~-------------------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (551)
..+..+|... +..+.|...|++.. ..+..+|..+...|...|++++|+..|++.....
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 7777776432 23566777777654 3456788899999999999999999999998865
Q ss_pred CCCCHh--hHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhc---CCCCHHH
Q 048830 287 FHPDSI--TFLGLLC-GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS---SPSDPVL 360 (551)
Q Consensus 287 ~~p~~~--t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~ 360 (551)
..|... .+..+.. ...+.|+.++|+..|++..+ +.|+....... ...+.++++++ -|.++.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHH
Confidence 443321 2223322 34578999999999998874 55654322222 23333333332 3448899
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 361 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
|..|...+...|++++|+..|+++++++|.+|.+...++
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999999999999999888776554
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=6.3e-16 Score=149.78 Aligned_cols=273 Identities=11% Similarity=-0.029 Sum_probs=164.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 048830 52 QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131 (551)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 131 (551)
+...|..+...+...|++++|+.+|+++....+ .+...+..+..++...|++++|...++.+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 344566677777777788888888877777654 355666777777777777777777777777763 44556666666
Q ss_pred HHHHhCCCHHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHH--HHHhcCCh
Q 048830 132 RGYAANGVIEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS--SCAHVGAL 206 (551)
Q Consensus 132 ~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~--~~~~~~~~ 206 (551)
..|...|++++|.+.|+++.+ | +...+..+... .|+......+.. .+...|++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 677777777777666665532 1 11122221000 011111111112 24455666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
++|...++.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...+...|++++|+..|+++.
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666553 22455666666666666777777666665542 345666677777777777777777777766
Q ss_pred HcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-------------CccchhhhhHHHhhcCCHHHHHHHH
Q 048830 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-------------GIKHYGCLVDLYGRAGKLEKALEVI 350 (551)
Q Consensus 284 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~ 350 (551)
+.. +.+..++..+...+...|++++|...++.+.+. .| +...+..+..+|.+.|++++|..++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 642 234556666777777777777777777776543 22 2556677777777777777777777
Q ss_pred hhcC
Q 048830 351 NTSS 354 (551)
Q Consensus 351 ~~~~ 354 (551)
++++
T Consensus 310 ~~~l 313 (327)
T 3cv0_A 310 AQNV 313 (327)
T ss_dssp TCCS
T ss_pred HHHH
Confidence 6633
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=6.1e-14 Score=152.34 Aligned_cols=347 Identities=10% Similarity=0.050 Sum_probs=272.7
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~ 97 (551)
.+....|.|+....+. +........++...-+ ...+...+...|.+++|..+|++.. -.....+.++.
T Consensus 1020 ~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie 1087 (1630)
T 1xi4_A 1020 EHRNLQNLLILTAIKA---DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE 1087 (1630)
T ss_pred ccHHHHHHHHHHHHHh---ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH
Confidence 3456778888777776 3344444444443323 3457788899999999999999852 12233344433
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048830 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177 (551)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 177 (551)
..+++++|.++.++. .++.+|..+..++.+.|++++|+..|.+. .|...|..++.++.+.|++++|++.
T Consensus 1088 ---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1088 ---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred ---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 668899999988755 35778899999999999999999999775 6778899999999999999999999
Q ss_pred HHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHh
Q 048830 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257 (551)
Q Consensus 178 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 257 (551)
|...++.. ++....+.++.+|++.+++++...+. + .++...+..+.+.|...|++++|..+|... .
T Consensus 1157 L~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ 1222 (1630)
T 1xi4_A 1157 LQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----S 1222 (1630)
T ss_pred HHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----h
Confidence 99877654 44333445889999999988654443 2 345667778999999999999999999985 5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 337 (551)
.|..+...|.+.|++++|++.+++. -+..+|..+..+|...|++..|...... +..++..+..++..|
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yY 1290 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYY 1290 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHH
Confidence 8999999999999999999999986 3668999999999999999999887553 334666788999999
Q ss_pred hhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhhcC-----CCcchHHHHHHHhhhcCC
Q 048830 338 GRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIH--RNVEIGEIAMKNLVQLEA-----ASAGDYVLLATIYACTKD 407 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~ 407 (551)
.+.|.+++|+.+++.++.. ....|.-|...+.+. ++..++.+.|..-..+.| .++..|..+...|.+.|.
T Consensus 1291 e~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred HHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999997766 566777777766654 566667777776655555 567789999999999999
Q ss_pred hhHHHH
Q 048830 408 EEGVAR 413 (551)
Q Consensus 408 ~~~a~~ 413 (551)
|+.|..
T Consensus 1371 ~dnA~~ 1376 (1630)
T 1xi4_A 1371 YDNAII 1376 (1630)
T ss_pred HHHHHH
Confidence 999984
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=171.53 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=103.3
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHH---HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHhHHH
Q 048830 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIAC---EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR----KRDVLSWN 260 (551)
Q Consensus 188 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~---~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~ 260 (551)
.-..||+++|++|++.|++++|.+++..|. +.|+.||..+||+||++|++.|++++|.++|++|. .||++|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 344678888888888888888888886655 34677888888888888888888888888888875 47888888
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC------ccchhhh
Q 048830 261 SMIVGYGVHGRG-DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG------IKHYGCL 333 (551)
Q Consensus 261 ~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l 333 (551)
++|.++++.|+. ++|.++|++|.+.|+.||..||++++.++.+.+ .++..+++.. ++.|+ +.+...|
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKP--TFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCC--CCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCc--ccCCCCCCcccccchHHH
Confidence 888888887774 677788888888888888888887776555543 3333333322 33332 4455566
Q ss_pred hHHHhhcC
Q 048830 334 VDLYGRAG 341 (551)
Q Consensus 334 i~~~~~~g 341 (551)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66666655
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=4.2e-17 Score=171.60 Aligned_cols=146 Identities=11% Similarity=0.005 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhh---hCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 048830 155 LVSWNSIISCYTQASFHLEALKLYERMR---FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231 (551)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 231 (551)
..+||+||.+|++.|+.++|.++|.+|. ..|+.||.+||++||.+|++.|++++|.++|++|.+.|+.||..+||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999998875 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HhhHHHHHHH
Q 048830 232 VDMYAKCGNL-DSAFCVFSRMR----KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD------SITFLGLLCG 300 (551)
Q Consensus 232 i~~y~~~g~~-~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~~ 300 (551)
|+++++.|+. ++|.++|++|. .||.++|++++.+..+. .+++..+++ ..+..|+ ..|...|...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999984 78899999997 48999999998766553 444444444 3345554 4444555555
Q ss_pred HhccC
Q 048830 301 CSHQG 305 (551)
Q Consensus 301 ~~~~g 305 (551)
|++.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 55543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.4e-15 Score=139.26 Aligned_cols=222 Identities=12% Similarity=0.011 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC--CchhHHHHHHHH
Q 048830 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV--ESVYVGNALVDM 234 (551)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~ 234 (551)
.|..+...+...|++++|+..|++..+.. ++...+..+..++...|++++|...+..+.+.... ++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 44555555555555555555555555443 44445555555555555555555555554442210 0000
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 048830 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314 (551)
Q Consensus 235 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 314 (551)
....+|..+...|...|++++|+..|+++... .|+. ..+...|++++|...+
T Consensus 77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence 00233444444444444444454444444442 2221 1233334455555555
Q ss_pred HHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 315 HMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 315 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
+.+.. ..| +...+..+...+...|++++|.+.+++++.. +..+|..+...+...|++++|...++++++..|+
T Consensus 129 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 129 EAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 55433 122 3344455555555555555555555543322 4555555556666666666666666666666666
Q ss_pred CcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 391 SAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
++..+..++.+|...|++++|...+++..
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666666666666666655544
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=9.3e-15 Score=136.23 Aligned_cols=187 Identities=14% Similarity=0.111 Sum_probs=151.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC----HhhHHHH
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG--FHPD----SITFLGL 297 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~l 297 (551)
..+..+...|...|++++|...|++..+ .+..+|..+...|...|++++|+..+++..+.. ..|+ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4555666667777777777777665432 556677777777888888888888888777632 1122 4778889
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcH
Q 048830 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNV 374 (551)
Q Consensus 298 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~ 374 (551)
...+...|++++|...|+.+.+. .|+ ...+.+.|++++|.+.+++++.. +...|..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~---~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE---HRT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CCC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc---Cch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999764 344 35677889999999999985544 778889999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 375 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
++|...++++++..|.++..+..++.+|...|++++|...++++.+..
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999987643
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.9e-15 Score=136.36 Aligned_cols=194 Identities=14% Similarity=0.016 Sum_probs=150.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048830 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298 (551)
Q Consensus 222 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 298 (551)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667777888888888888888888887654 356788888888888899999999888888753 23456777788
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHH
Q 048830 299 CGCSHQ-----------GLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTL 364 (551)
Q Consensus 299 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l 364 (551)
..+... |++++|...|++..+. .| +...+..+..+|...|++++|++.|++++.. ++..|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999988753 55 5677888999999999999999999885543 78889999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 365 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
..++...|++++|...++++++++|+++..+..++.++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=3.8e-14 Score=133.58 Aligned_cols=240 Identities=10% Similarity=-0.081 Sum_probs=191.4
Q ss_pred hcCChHHHHHHHHHhhhCCc---ccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 048830 167 QASFHLEALKLYERMRFEDV---GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243 (551)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~~~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 243 (551)
..|++++|+..|+++.+... +.+..++..+..++...|++++|...++.+++.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45788899999988887532 1245577788888889999999999999988875 3467888999999999999999
Q ss_pred HHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 048830 244 AFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320 (551)
Q Consensus 244 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 320 (551)
|.+.|++..+ .+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998763 46788999999999999999999999999885 455555555556667789999999999888764
Q ss_pred cCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 321 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
.+++... ..++..+...++.++|.+.+++++.. +..+|..+...+...|++++|...++++++.+|.+..
T Consensus 174 --~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2334333 44777888889999999999997776 2578889999999999999999999999999988755
Q ss_pred hHHHHHHHhhhcCChhHHHHHH
Q 048830 394 DYVLLATIYACTKDEEGVARTR 415 (551)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~ 415 (551)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66788889998887765
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=6.5e-14 Score=142.29 Aligned_cols=343 Identities=10% Similarity=0.003 Sum_probs=211.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 048830 59 LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKAL---NKCQELHGFVIRSGYERCVVVSTNLMRGYA 135 (551)
Q Consensus 59 li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 135 (551)
+...+.+.|++++|+.+|++..+.|. ++ .+..+...+...|+. ++|...|.+..+. ++..+..|..++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~--~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY--SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC--CT--GGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC--HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 55667778888888888888877653 33 333455555566776 7888888887753 4445566666555
Q ss_pred hCC-----CHHHHHHHhccCCCC-ChhHHHHHHHHHHhcCChHH---HHHHHHHhhhCCcccCHHHHHHHHHHHHhcCCh
Q 048830 136 ANG-----VIEAARSVFDNMPER-DLVSWNSIISCYTQASFHLE---ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206 (551)
Q Consensus 136 ~~g-----~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 206 (551)
..| +.++|...|++..++ +..++..|...|...+..++ +.+.+......| +......+...|...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 554 677888888776543 44577778877777665443 444444444333 233444555666666644
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CCHhHHHHHHHHHHhc----CChHHHH
Q 048830 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCG---NLDSAFCVFSRMRK---RDVLSWNSMIVGYGVH----GRGDEAI 276 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~ 276 (551)
+++........+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 444333333333222334447788888888888 88888888887643 3444446677766544 6888888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcC-----CHHHHHH
Q 048830 277 SFFKQMLMAGFHPDSITFLGLLCG-C--SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG-----KLEKALE 348 (551)
Q Consensus 277 ~~~~~m~~~g~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 348 (551)
..|++.. .| +...+..|... + ...+++++|..+|++..+. | +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8888876 33 44455555554 3 4578888888888888654 3 5566677777776 45 8888888
Q ss_pred HHhhcCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh----cCChhHHHHHHHHHHh
Q 048830 349 VINTSSPSDPVLWRTLLGSCKI----HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC----TKDEEGVARTRKLIKS 420 (551)
Q Consensus 349 ~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 420 (551)
+|+++.+.++..+..|...|.. ..+.++|...|+++.+. .++.....|+.+|.. ..+.++|...+++..+
T Consensus 309 ~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 309 HFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 8888772288888888877766 34888888888887764 456778888888875 4578888888888877
Q ss_pred CCC
Q 048830 421 NGI 423 (551)
Q Consensus 421 ~g~ 423 (551)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 765
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=7.3e-13 Score=124.60 Aligned_cols=253 Identities=13% Similarity=0.013 Sum_probs=165.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccC--HHHHHHHHHHHH
Q 048830 127 STNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD--GFTLVCLLSSCA 201 (551)
Q Consensus 127 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~ 201 (551)
+......+.+.|++++|+..|++..+ .+..+|..+...|...|++++|+..|++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33455566667777777777666532 2344677777777777788888887777766332222 223667777777
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 048830 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISF 278 (551)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 278 (551)
..|++++|...++.+.+.. +.+..++..+..+|...|++++|.+.|++..+ .+...|..+...+...+++++|+..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888777764 23567788888888888888888888888764 3556677666233344588888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhccCC---HHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC
Q 048830 279 FKQMLMAGFHPDSITFLGLLCGCSHQGL---VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355 (551)
Q Consensus 279 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 355 (551)
|+++.+.. +.+...+..+...+...|+ .++|...++++.+...-.|+.. - ..
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~-----------------~~------ 219 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K-----------------DE------ 219 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-----------------HH------
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-----------------HH------
Confidence 88887752 2234555566666666665 6666666666654322112210 0 00
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC
Q 048830 356 SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406 (551)
Q Consensus 356 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 406 (551)
...+|..+...|...|++++|...++++++++|+++.+...+..+....+
T Consensus 220 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 220 -LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 12466778888888999999999999999999999988877766655544
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=6.7e-13 Score=125.21 Aligned_cols=224 Identities=13% Similarity=-0.008 Sum_probs=120.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 048830 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH----VGALNMGIFLHRIACEMGFVESVYVGN 229 (551)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 229 (551)
+..++..+...|...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555666666666666666666666552 223444455555555 566666666666665543 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048830 230 ALVDMYAK----CGNLDSAFCVFSRMRK-RDVLSWNSMIVGYGV----HGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300 (551)
Q Consensus 230 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 300 (551)
.+..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55566665 6666666666655432 244555555555555 566666666666665543 33444444455
Q ss_pred Hhc----cCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh----cCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh-
Q 048830 301 CSH----QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR----AGKLEKALEVINTSSPS-DPVLWRTLLGSCKI- 370 (551)
Q Consensus 301 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~- 370 (551)
+.. .+++++|..+|++..+. .+...+..+..+|.. .+++++|.+.|++++.. +...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 544 55566666655555432 123344445555555 55555555555553333 44444455555554
Q ss_pred ---cCcHHHHHHHHHHHHhhcCC
Q 048830 371 ---HRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 371 ---~g~~~~a~~~~~~~~~~~p~ 390 (551)
.++.++|...++++.+++|+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 55555555555555555544
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=7.8e-14 Score=141.69 Aligned_cols=374 Identities=12% Similarity=-0.011 Sum_probs=250.0
Q ss_pred HHHHHHcCCCCChHHHHHHHhcCCC-CChhhHHHHHHHHHcCCCh---hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 048830 26 LLNSYAISVSSSLSYAQLLFNQIQN-PQTQAWNSLIRAFAQSLSP---LQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101 (551)
Q Consensus 26 li~~~~~~~~g~~~~A~~lf~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~ 101 (551)
+...+.+. |++++|.++|.+..+ .+..++..|...|...|++ ++|+..|++.... +...+..+...+..
T Consensus 9 la~~~~~~--g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKR--GDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHTCCTGGGTCC---------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHh
Confidence 56667778 999999999987643 3566677777777788888 8999999998754 33445555553444
Q ss_pred cC-----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH---HHHhccCCC-CChhHHHHHHHHHHhcCChH
Q 048830 102 VK-----ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA---RSVFDNMPE-RDLVSWNSIISCYTQASFHL 172 (551)
Q Consensus 102 ~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A---~~~~~~m~~-~~~~~~~~li~~~~~~g~~~ 172 (551)
.+ +.++|...+.+..+.|.. ..+..|..+|...+..+.+ .+.+....+ .+...+..|...|...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 43 788999999999987632 2566788888877665443 333333322 45678888888898888665
Q ss_pred HHHHHHHHhhhCCcccCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc----CCHHHHH
Q 048830 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVG---ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC----GNLDSAF 245 (551)
Q Consensus 173 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~ 245 (551)
++........+.-...+...+..+...|...| +.++|...+....+.| .++...+..|..+|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 55444333222111222237777888888889 8999999999999987 34555557788888665 7999999
Q ss_pred HHHHhcCCCCHhHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC-----CHHHHHHHHHHh
Q 048830 246 CVFSRMRKRDVLSWNSMIVG-Y--GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG-----LVEEGVEYFHMM 317 (551)
Q Consensus 246 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~~ 317 (551)
+.|++....++.++..+... | ...+++++|+..|++..+.| +...+..|...|. .| ++++|..+|++.
T Consensus 238 ~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 238 ALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 99998884467788888877 4 56899999999999999877 5666667777776 45 999999999987
Q ss_pred HHhcCCCCCccchhhhhHHHhh----cCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhc
Q 048830 318 VSRYNLKPGIKHYGCLVDLYGR----AGKLEKALEVINTSSPS-DPVLWRTLLGSCKI----HRNVEIGEIAMKNLVQLE 388 (551)
Q Consensus 318 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 388 (551)
. .-+...+..|..+|.. ..++++|..+|+++... ++.....|...|.. ..|.++|...++++.+.+
T Consensus 314 a-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 314 V-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp T-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred h-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 4 3366777788888876 45999999999997777 77788888888764 568999999999999887
Q ss_pred CCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 389 AASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 389 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+.........+......++.++|..+.++-+
T Consensus 389 ~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 389 TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5543333333333333445666666665543
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=8e-13 Score=124.69 Aligned_cols=223 Identities=16% Similarity=0.077 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCHhHHHHHH
Q 048830 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK----CGNLDSAFCVFSRMRK-RDVLSWNSMI 263 (551)
Q Consensus 189 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 263 (551)
+..++..+...+...|++++|...++...+. .+...+..+..+|.. .|++++|.+.|++..+ .++.++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4556777888889999999999999999983 356788889999999 9999999999998764 4788899999
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 264 VGYGV----HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH----QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 264 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|..+|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888889998 99999999999999874 3 5667788888
Q ss_pred HHhh----cCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh--
Q 048830 336 LYGR----AGKLEKALEVINTSSPS-DPVLWRTLLGSCKI----HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC-- 404 (551)
Q Consensus 336 ~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 404 (551)
+|.. .+++++|.+.|++++.. ++..+..+...+.. .+++++|...++++++.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999997766 88899999999999 9999999999999999876 7789999999999
Q ss_pred --cCChhHHHHHHHHHHhCCC
Q 048830 405 --TKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 405 --~g~~~~a~~~~~~m~~~g~ 423 (551)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999887654
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=1.7e-13 Score=124.52 Aligned_cols=195 Identities=13% Similarity=-0.020 Sum_probs=116.3
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 048830 51 PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130 (551)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 130 (551)
++...|..+...+.+.|++++|+..|++..+..+ .+...+..+..++.+.|++++|...+++.++.. +.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP--QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4556677777777778888888888887777664 356677777777777788888888887777764 4456667777
Q ss_pred HHHHHhC-----------CCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHH
Q 048830 131 MRGYAAN-----------GVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCL 196 (551)
Q Consensus 131 i~~y~~~-----------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 196 (551)
..+|.+. |++++|+..|++..+ .+..+|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 7777766 666666666655432 234556666666666666666666666665544 455555556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 048830 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 251 (551)
..++...|++++|...++.+++.. +.+..++..+..+|.+.|++++|.+.|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666665543 223455555556666666666666555543
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=1.7e-13 Score=127.46 Aligned_cols=195 Identities=13% Similarity=-0.008 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 301 (551)
...+..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34555566666666666666666665542 345566666666667777777777777666542 22445566666666
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHH
Q 048830 302 SHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a 377 (551)
...|++++|..+++.+.+ .+..| +...+..+..+|...|++++|.+.+++++.. +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777776654 12334 3455666666777777777777776664332 566677777777777777777
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
...++++++..|.++..+..++.+|...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777776553
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=2e-13 Score=136.32 Aligned_cols=194 Identities=14% Similarity=0.086 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHH
Q 048830 227 VGNALVDMYAKCGNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGR--------------------GDEAIS 277 (551)
Q Consensus 227 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 277 (551)
++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 444555555555555555555554432 11 2355555566666666 666666
Q ss_pred HHHHHHHc----CCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhhcCCHHHHHH
Q 048830 278 FFKQMLMA----GFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGRAGKLEKALE 348 (551)
Q Consensus 278 ~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 348 (551)
.+++.... +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66654431 11111 234566666677777777777777766543211111 2356667777777777777777
Q ss_pred HHhhcCCC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC------cchHHHHHHHhhhcCChhHHHH
Q 048830 349 VINTSSPS---------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS------AGDYVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 349 ~~~~~~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 413 (551)
.+++++.. ...++..+...+...|++++|...+++++++.+.. +.++..++.+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77664432 15567777778888888888888888887764432 4567788888888888888888
Q ss_pred HHHHHHh
Q 048830 414 TRKLIKS 420 (551)
Q Consensus 414 ~~~~m~~ 420 (551)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=1.2e-13 Score=138.64 Aligned_cols=195 Identities=12% Similarity=0.012 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CCHhHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMRK---------RDVLSWNSMIVGYGVHGR-----------------GDEAISFF 279 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 279 (551)
.++..+...|...|++++|...|++..+ ....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3444455555555555555555544331 012345555555666666 66666666
Q ss_pred HHHHHc----CCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhhcCCHHHHHHHH
Q 048830 280 KQMLMA----GFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGRAGKLEKALEVI 350 (551)
Q Consensus 280 ~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 350 (551)
++..+. +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+..+|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 554431 11111 235556666677777777777777766543211111 225667777777778877777777
Q ss_pred hhcCCC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC------cchHHHHHHHhhhcCChhHHHHHH
Q 048830 351 NTSSPS---------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS------AGDYVLLATIYACTKDEEGVARTR 415 (551)
Q Consensus 351 ~~~~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~ 415 (551)
++++.. ...++..+...+...|++++|...++++++..+.. ...+..++.+|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 664433 25677778888888889999998888888765332 447888999999999999999999
Q ss_pred HHHHh
Q 048830 416 KLIKS 420 (551)
Q Consensus 416 ~~m~~ 420 (551)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=3.1e-13 Score=122.97 Aligned_cols=194 Identities=13% Similarity=0.061 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 301 (551)
..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|...|+++.... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44555566666666666666666665432 345566666666667777777777777666642 23455666666667
Q ss_pred hcc-CCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHH
Q 048830 302 SHQ-GLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 302 ~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
... |++++|...++.+.+ .+..| +...+..+..+|...|++++|.+.+++++.. +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 777 777777777777654 22333 2455666677777777777777777653332 66777777777777888888
Q ss_pred HHHHHHHHHhhcC-CCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 377 GEIAMKNLVQLEA-ASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 377 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
|...++++++..| .++..+..++..+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888888777 7777777777777888888888877777654
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=6.1e-13 Score=123.65 Aligned_cols=208 Identities=13% Similarity=-0.061 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 048830 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234 (551)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 234 (551)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~------------ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-S------------ 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c------------
Confidence 4556677777777777777777777766532 2234445555555555555555555555555442 1
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHH
Q 048830 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEY 313 (551)
Q Consensus 235 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 313 (551)
.+...|..+...|...|++++|+.+|+++...+..|+ ...+..+...+...|++++|...
T Consensus 103 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334444455555555555555555555544222332 34455555566666666666666
Q ss_pred HHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 314 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
++++.+. .+.+...+..+..+|...|++++|.+.+++++.. +...+..+...+...|+.++|...++++++..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6666543 1123555666677777777777777777664433 6777778888888899999999999999999998
Q ss_pred CcchHHH
Q 048830 391 SAGDYVL 397 (551)
Q Consensus 391 ~~~~~~~ 397 (551)
++.....
T Consensus 242 ~~~~~~~ 248 (252)
T 2ho1_A 242 SLEYQEF 248 (252)
T ss_dssp SHHHHHH
T ss_pred CHHHHHH
Confidence 8765543
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=5.9e-13 Score=125.33 Aligned_cols=242 Identities=9% Similarity=-0.075 Sum_probs=173.1
Q ss_pred HcCCChhHHHHHHHHHHHcCCCC--CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 048830 64 AQSLSPLQAIFYYNHMLMASLSR--PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141 (551)
Q Consensus 64 ~~~g~~~~A~~l~~~m~~~~~~~--pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 141 (551)
...|++++|+..|+++....... .+..++..+...+...|++++|...+..+++.. +.+..++..+..+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 34577888888888887764210 134567777888888888888888888888774 456778888888888888888
Q ss_pred HHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 142 AARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218 (551)
Q Consensus 142 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (551)
+|.+.|++..+ .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+.....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888887654 35678888888999999999999999988764 45555555555666777899999999988777
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048830 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD-------VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291 (551)
Q Consensus 219 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (551)
.. +++...+ .++..+...++.++|.+.+.+..+.+ ..+|..+...|...|++++|...|++.... .|+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 64 3344444 36777788888888888888877542 466777788888888888888888888764 3433
Q ss_pred hhHHHHHHHHhccCCHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYF 314 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~ 314 (551)
. .....++...|++++|...+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 2 22234555666666666554
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=3.9e-13 Score=132.58 Aligned_cols=244 Identities=10% Similarity=0.031 Sum_probs=195.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048830 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALVD 233 (551)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~ 233 (551)
..+|+.+...+.+.|++++|+..|++..+.. +-+...|..+..++...|+ +++|...++.+++.. +.+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4568888888888999999999999887642 2345677778888888886 999999999998875 336788888999
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-cCCHHH
Q 048830 234 MYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH-QGLVEE 309 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~ 309 (551)
+|.+.|++++|...|+++.+ .+..+|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998763 577889999999999999999999999999863 3356778888888888 566567
Q ss_pred H-----HHHHHHhHHhcCCCC-CccchhhhhHHHhhcC--CHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcC------
Q 048830 310 G-----VEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAG--KLEKALEVINTSSPS---DPVLWRTLLGSCKIHR------ 372 (551)
Q Consensus 310 a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g------ 372 (551)
| +..|++.++ +.| +...|..+..+|...| ++++|.+.+.+ ++. +...+..++..|...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~-~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLD-LQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH-HTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHH-hccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 6 477887764 456 5678888888888888 68899988887 433 7788888888888764
Q ss_pred ---cHHHHHHHHHHH-HhhcCCCcchHHHHHHHhhhc
Q 048830 373 ---NVEIGEIAMKNL-VQLEAASAGDYVLLATIYACT 405 (551)
Q Consensus 373 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 405 (551)
..++|..+++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 358999999999 899999888888877766543
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=8e-14 Score=128.72 Aligned_cols=145 Identities=12% Similarity=0.017 Sum_probs=76.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
..+|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..+..
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 3444444444555555555555555554432 223344444555555555555555555555432 1123444555555
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
.|.+.|++++|.+.+++++.. +..+|..+...+...|++++|...++++++++|+++..+..+..+..
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 555555555555555543222 55566666666667777777777777777777776666655544433
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=2.7e-13 Score=131.28 Aligned_cols=259 Identities=12% Similarity=0.032 Sum_probs=163.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCcccC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHh----CCCC-chhHHHH
Q 048830 161 IISCYTQASFHLEALKLYERMRFEDVGLD-----GFTLVCLLSSCAHVGALNMGIFLHRIACEM----GFVE-SVYVGNA 230 (551)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~ 230 (551)
....+...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...+..+.+. +..+ ...++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3444455555555555555554431 22 133444455555555555555555544332 1111 1345556
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 048830 231 LVDMYAKCGNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGR--------------------GDEAISFFKQ 281 (551)
Q Consensus 231 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 281 (551)
+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66666666666666666665432 11 2356666666777777 7777777766
Q ss_pred HHHc----CCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 282 MLMA----GFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 282 m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
.... +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 11111 245666777777888888888888777643211111 33677778888888888888888877
Q ss_pred cCCC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC------cchHHHHHHHhhhcCChhHHHHHHHH
Q 048830 353 SSPS---------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS------AGDYVLLATIYACTKDEEGVARTRKL 417 (551)
Q Consensus 353 ~~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 417 (551)
++.. ...++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4433 25677788888999999999999999998875432 44788899999999999999999998
Q ss_pred HHhC
Q 048830 418 IKSN 421 (551)
Q Consensus 418 m~~~ 421 (551)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8763
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1.2e-13 Score=127.53 Aligned_cols=196 Identities=10% Similarity=0.073 Sum_probs=155.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048830 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299 (551)
Q Consensus 223 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 299 (551)
.....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.... +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677788888999999999999988754 467888899999999999999999999998863 346678888999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHH
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
.+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|.+.+++++.. +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999764 2336778889999999999999999999885533 88899999999999999999
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 377 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
|...++++++..|.++..+..++.+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998764
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=1.4e-13 Score=137.45 Aligned_cols=294 Identities=11% Similarity=0.000 Sum_probs=180.1
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhCCCHHHHHHHhccCCC-----C----
Q 048830 87 PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC----VVVSTNLMRGYAANGVIEAARSVFDNMPE-----R---- 153 (551)
Q Consensus 87 pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~---- 153 (551)
+....+......+...|++++|...++.+++.. +.+ ..++..+...|...|++++|...|++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 344556667777888889999999998888874 223 34677777888888888888887766432 1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcc-cC----HHHHHHHHHHHHhcCC--------------------hHH
Q 048830 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVG-LD----GFTLVCLLSSCAHVGA--------------------LNM 208 (551)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~ll~~~~~~~~--------------------~~~ 208 (551)
...+|..+...|...|++++|+..|.+..+.... ++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2345667777777777777777777766542100 11 2244445555555555 444
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR--DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (551)
|...+....+. +.....+ ...++..+...|...|++++|+..+++..+..
T Consensus 166 A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 44444443321 1111000 12345555556666666666666666554321
Q ss_pred C-CCC----HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhhcCCHHHHHHHHhhcCCC-
Q 048830 287 F-HPD----SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGRAGKLEKALEVINTSSPS- 356 (551)
Q Consensus 287 ~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 356 (551)
. .++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.+++++..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 125556666666677777777766666532111111 445666777777777777777777664432
Q ss_pred --------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcC------CCcchHHHHHHHhhhcCChh
Q 048830 357 --------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA------ASAGDYVLLATIYACTKDEE 409 (551)
Q Consensus 357 --------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 409 (551)
...++..+...+...|++++|...+++++++.+ ....++..++.+|...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 256777888888899999999999999887642 23557778888888888764
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=3e-13 Score=133.39 Aligned_cols=224 Identities=11% Similarity=0.038 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CCHhHHHHHHHHH
Q 048830 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN-LDSAFCVFSRMRK---RDVLSWNSMIVGY 266 (551)
Q Consensus 191 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 266 (551)
..|..+..++...|++++|...++.+++.. +.+..+|+.+..+|.+.|+ +++|++.|+++.+ .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 466777788889999999999999999975 3467899999999999997 9999999998864 4778999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhh-cCCHH
Q 048830 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGR-AGKLE 344 (551)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~~ 344 (551)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..|+++++. .| +...|..+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999863 335688899999999999999999999999863 55 67889999999999 66657
Q ss_pred HH-----HHHHhhcCCC---CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC--------
Q 048830 345 KA-----LEVINTSSPS---DPVLWRTLLGSCKIHR--NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK-------- 406 (551)
Q Consensus 345 ~A-----~~~~~~~~~~---~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 406 (551)
+| ++.|++++.. +...|..+...+...| ++++|...++++ +.+|+++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777765543 8999999999999988 689999999998 889999999999999999975
Q ss_pred -ChhHHHHHHHHH-Hh
Q 048830 407 -DEEGVARTRKLI-KS 420 (551)
Q Consensus 407 -~~~~a~~~~~~m-~~ 420 (551)
..++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 55
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=8.8e-13 Score=124.05 Aligned_cols=220 Identities=11% Similarity=-0.022 Sum_probs=137.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----HhHHHHHHHHHHhcCC
Q 048830 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD----VLSWNSMIVGYGVHGR 271 (551)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~ 271 (551)
..+...|++++|...++.+++.. +.+...+..+..+|...|++++|.+.|++..+ ++ ..+|..+...|...|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 34444444455555444444432 12233455555555555666666555555432 11 2235666666666677
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHH
Q 048830 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVI 350 (551)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 350 (551)
+++|+..|++..+.. +.+..++..+...+...|++++|...|++..+ ..| +...+..+...+...+++++|.+.|
T Consensus 90 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666642 22345666667777777777777777776643 344 4455555552333344777777777
Q ss_pred hhcCCC---CHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhhc---CCC-----cchHHHHHHHhhhcCChhHHHHHHH
Q 048830 351 NTSSPS---DPVLWRTLLGSCKIHRN---VEIGEIAMKNLVQLE---AAS-----AGDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 351 ~~~~~~---~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
++++.. +...+..+...+...|+ .++|...++++++.. |+. ...|..++.+|...|++++|.+.++
T Consensus 166 ~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 664433 56677777777777777 777888888888775 432 2578889999999999999999999
Q ss_pred HHHhCC
Q 048830 417 LIKSNG 422 (551)
Q Consensus 417 ~m~~~g 422 (551)
++.+..
T Consensus 246 ~al~~~ 251 (272)
T 3u4t_A 246 NILALD 251 (272)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 987643
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=2.3e-12 Score=117.10 Aligned_cols=201 Identities=14% Similarity=-0.039 Sum_probs=125.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhc-
Q 048830 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---KRDVLSWNSMIVGYGVH- 269 (551)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~- 269 (551)
..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++. ..+..+|..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 333344444444444444444444432 1234445555555555555555555555543 23455566666666666
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHH
Q 048830 270 GRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKAL 347 (551)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 347 (551)
|++++|+..++++.+.+..|+ ...+..+..++...|++++|...++.+.+. .| +...+..+..+|.+.|++++|.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 777777777776666222333 355666666777777777777777776543 23 4566677777777777777777
Q ss_pred HHHhhcC---C-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 348 EVINTSS---P-SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 348 ~~~~~~~---~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
+.+++++ | .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 7776633 3 4667777777888889999999999999999999988766554
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=1.8e-12 Score=114.24 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=116.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhh
Q 048830 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 334 (551)
++..|..+...|...|++++|+..|++..+.. +-+..++..+..++.+.|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34556666666666666666666666666542 223455666666667777777777777666542 122345555666
Q ss_pred HHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHH
Q 048830 335 DLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411 (551)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 411 (551)
..+...++++.|.+.+.+++. .+...+..+...+...|++++|+..++++++++|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 667777777777777665332 27778888888888888999999999999999999988999999999999999999
Q ss_pred HHHHHHHHhC
Q 048830 412 ARTRKLIKSN 421 (551)
Q Consensus 412 ~~~~~~m~~~ 421 (551)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9998887653
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=6.8e-13 Score=133.05 Aligned_cols=268 Identities=14% Similarity=0.029 Sum_probs=157.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhCCCHHHHHHHhccCCC---------CChhH
Q 048830 91 TFTFTLKACERVKALNKCQELHGFVIRSGYERCV----VVSTNLMRGYAANGVIEAARSVFDNMPE---------RDLVS 157 (551)
Q Consensus 91 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~---------~~~~~ 157 (551)
.+..+...+...|++++|...++.+++.. +.+. .++..+...|...|++++|...|++..+ ....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445555666777777777777777653 2222 3556666666666676666666655432 12234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHH
Q 048830 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF-VESVYVGNALVDMYA 236 (551)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~ 236 (551)
|..+...|...|++++|+..|++..+... +.+- .....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 55555566666666666666655433200 0000 111233444444555
Q ss_pred hcCC-----------------HHHHHHHHHhcCC-------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC
Q 048830 237 KCGN-----------------LDSAFCVFSRMRK-------R--DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF-HP 289 (551)
Q Consensus 237 ~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p 289 (551)
..|+ +++|.+.|++..+ + ...+|..+...|...|++++|+..|++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 4555444444321 0 123556666666777777777777766654210 01
Q ss_pred C----HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----CccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----
Q 048830 290 D----SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP----GIKHYGCLVDLYGRAGKLEKALEVINTSSPS----- 356 (551)
Q Consensus 290 ~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 356 (551)
+ ..++..+...+...|++++|...+++..+...-.. ...++..+..+|...|++++|.+.+++++..
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 12566677777777777777777777654311111 1456677778888888888888888774443
Q ss_pred ----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 357 ----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 357 ----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
...++..+...+...|++++|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2457778888899999999999999999887643
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=3e-12 Score=123.87 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC----hhhHHHHHHHHhccCChHHHHHHHHHHHHh----CCCC-ChhH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD----TFTFTFTLKACERVKALNKCQELHGFVIRS----GYER-CVVV 126 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~ 126 (551)
+......+...|++++|+..|+++....+ .+ ...+..+...+...|++++|...+.+..+. +..+ ...+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34444556666667777776666666542 12 234555556666666666666666655432 1111 1223
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcc
Q 048830 127 STNLMRGYAANGVIEAARSVFDN 149 (551)
Q Consensus 127 ~~~li~~y~~~g~~~~A~~~~~~ 149 (551)
+..+...|...|++++|...|++
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~ 108 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQR 108 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHH
Confidence 34444444444444444444433
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=7.8e-12 Score=124.20 Aligned_cols=225 Identities=10% Similarity=0.081 Sum_probs=119.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhC----Cccc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC--C----CCchhHHH
Q 048830 161 IISCYTQASFHLEALKLYERMRFE----DVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEMG--F----VESVYVGN 229 (551)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~----~~~~~~~~ 229 (551)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|++++|...+.++.+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556667777777777666542 1111 22355556666666666666666666655431 0 01134556
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhhHH
Q 048830 230 ALVDMYAKCGNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGRGDEAISFFKQMLMA----GFHP-DSITFL 295 (551)
Q Consensus 230 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~ 295 (551)
.+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..|++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 666667777777777766665442 11 135666666677777777777777666551 2212 234566
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCC--C-CccchhhhhHHHhhcCC---HHHHHHHHhhcCCC---CHHHHHHHHH
Q 048830 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLK--P-GIKHYGCLVDLYGRAGK---LEKALEVINTSSPS---DPVLWRTLLG 366 (551)
Q Consensus 296 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~~ll~ 366 (551)
.+...+...|++++|...+++..+...-. | ....+..+...|...|+ +++|..++++ ... ....+..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES-KMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 66666666777777776666655421110 1 11223445555555555 5555555555 332 2233444444
Q ss_pred HHHhcCcHHHHHHHHHHHHh
Q 048830 367 SCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~ 386 (551)
.|...|++++|...++++++
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 44444455554444444444
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=1.2e-12 Score=133.75 Aligned_cols=204 Identities=12% Similarity=0.019 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL-DSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
+++...+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+..+|..+...|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433322 23566667777777777777 777777776542 35677888888888888888888888888
Q ss_pred HHcCCCCCHhhHHHHHHHHhcc---------CCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhc--------CCHH
Q 048830 283 LMAGFHPDSITFLGLLCGCSHQ---------GLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRA--------GKLE 344 (551)
Q Consensus 283 ~~~g~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~~ 344 (551)
.+. .|+...+..+...+... |++++|...|+++.+. .| +...|..+..+|... |+++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 774 46677777888888888 8888888888888753 34 567788888888888 8889
Q ss_pred HHHHHHhhcCC------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHH
Q 048830 345 KALEVINTSSP------SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 345 ~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
+|.+.|++++. .+...|..+..+|...|++++|...++++++++|+++.++..++.++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99888887543 3788999999999999999999999999999999999999999999999999999987654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=2.6e-12 Score=127.63 Aligned_cols=224 Identities=12% Similarity=0.001 Sum_probs=175.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----HhHHH
Q 048830 196 LLSSCAHVGALNMGIFLHRIACEM----GFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRK-----RD-----VLSWN 260 (551)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 260 (551)
....+...|++++|...+..+.+. +-.+ ...++..+...|...|++++|...+.+..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555677899999999999999874 2122 346788999999999999999999887652 22 35788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-Cccchh
Q 048830 261 SMIVGYGVHGRGDEAISFFKQMLMAGF-HPD----SITFLGLLCGCSHQGLVEEGVEYFHMMVSRY---NLKP-GIKHYG 331 (551)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~ 331 (551)
.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|...+++..+.. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999876311 112 2478889999999999999999999987621 2213 466788
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCC-----C---HHHHHHHHHHHHhcCc---HHHHHHHHHHHHhhcCCCcchHHHHHH
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPS-----D---PVLWRTLLGSCKIHRN---VEIGEIAMKNLVQLEAASAGDYVLLAT 400 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 400 (551)
.+...|.+.|++++|.+.+++++.. + ...+..+...+...|+ .++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999886653 2 2235667788888898 77777777665 233445668889999
Q ss_pred HhhhcCChhHHHHHHHHHHh
Q 048830 401 IYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 401 ~~~~~g~~~~a~~~~~~m~~ 420 (551)
+|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=6.9e-13 Score=127.19 Aligned_cols=241 Identities=14% Similarity=0.022 Sum_probs=136.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhC-------CcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------CC
Q 048830 155 LVSWNSIISCYTQASFHLEALKLYERMRFE-------DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM------GF 221 (551)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~ 221 (551)
..+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456888888899999999999999888762 22333456677777788888888888888877764 22
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 048830 222 -VESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-----------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA---- 285 (551)
Q Consensus 222 -~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 285 (551)
+....++..+...|...|++++|.+.|++..+ ....++..+...|...|++++|+.+|+++...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22355667777777777787777777776542 12345666666777777777777777776653
Q ss_pred --CCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC
Q 048830 286 --GFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRY------NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356 (551)
Q Consensus 286 --g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 356 (551)
+-.|+ ..++..+...+...|++++|..+++++.+.. ...+.......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 11222 2355566666677777777777776665421 01111111100
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
....+..+...+...+.+.++...+++.....|..+.++..++.+|...|++++|.+++++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111122222233334444445555555555555555666666666666666666666665553
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=4.1e-12 Score=111.94 Aligned_cols=165 Identities=13% Similarity=0.095 Sum_probs=133.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048830 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300 (551)
Q Consensus 224 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 300 (551)
++.+|..|...|.+.|++++|.+.|++..+ .++.+|..+...|...|++++|+..+++..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 566788888888888888888888887653 467788888888888888888888888887753 3345666677778
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
+...++++.|...+....+. .| +...+..+..+|.+.|++++|++.|++++.. +..+|..+..++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888999999988888653 34 5677888888999999999999988875433 88899999999999999999
Q ss_pred HHHHHHHHHhhcCCCc
Q 048830 377 GEIAMKNLVQLEAASA 392 (551)
Q Consensus 377 a~~~~~~~~~~~p~~~ 392 (551)
|...++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999998754
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.7e-12 Score=124.38 Aligned_cols=240 Identities=13% Similarity=0.033 Sum_probs=169.8
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHhccCCC--------C---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhC------
Q 048830 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPE--------R---DLVSWNSIISCYTQASFHLEALKLYERMRFE------ 184 (551)
Q Consensus 122 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 184 (551)
.+..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|+..|++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3456788899999999999999999988754 1 2456888999999999999999999998764
Q ss_pred Cc-ccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 048830 185 DV-GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM------GFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--- 253 (551)
Q Consensus 185 ~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--- 253 (551)
+- .....++..+...+...|++++|...+..+.+. +..| ...++..+...|...|++++|.+.|+++.+
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22 233557888889999999999999999998875 2223 356788899999999999999999988643
Q ss_pred ----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCCCHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 254 ----R----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-------FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 254 ----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
+ ...++..+...|...|++++|...|+++.+.. ..|.........
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-------------------- 244 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA-------------------- 244 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH--------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH--------------------
Confidence 1 24578889999999999999999999998741 111111111111
Q ss_pred HhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 319 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
..+..+...+...+.+.+|...+...... +..+|..+..+|...|++++|...+++++++.|.
T Consensus 245 ---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 ---------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred ---------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11222233334445555555555553333 6677888889999999999999999999888764
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=3.6e-10 Score=118.88 Aligned_cols=403 Identities=7% Similarity=-0.059 Sum_probs=273.7
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCC---hhHHHHHHHHHHHcCCCCCChh
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLS---PLQAIFYYNHMLMASLSRPDTF 90 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~~pd~~ 90 (551)
+.|...|..++..+.+. +.++.|+.+|+++. +.....|...+..-.+.|+ ++.+..+|++.+...+..|+..
T Consensus 63 p~d~~~W~~yi~~~~~~--~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSL--KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 46888999999999998 99999999999875 4567789999998888898 9999999999987763226777
Q ss_pred hHHHHHHHHhccCCh--------HHHHHHHHHHHH-hCC-CCC-hhHHHHHHHHHHh---------CCCHHHHHHHhccC
Q 048830 91 TFTFTLKACERVKAL--------NKCQELHGFVIR-SGY-ERC-VVVSTNLMRGYAA---------NGVIEAARSVFDNM 150 (551)
Q Consensus 91 ~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~~---------~g~~~~A~~~~~~m 150 (551)
.|..-+....+.++. +...++|+..+. .|. .++ ...|...+..... .++++.+.++|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 777666655444443 344577777665 365 454 4678777766543 34577899999887
Q ss_pred CC-CC---hhHHH---HHHHHH----------HhcCChHHHHHHHHHhhh--CCc----c-----------c-----CH-
Q 048830 151 PE-RD---LVSWN---SIISCY----------TQASFHLEALKLYERMRF--EDV----G-----------L-----DG- 190 (551)
Q Consensus 151 ~~-~~---~~~~~---~li~~~----------~~~g~~~~A~~~~~~m~~--~~~----~-----------p-----~~- 190 (551)
.. |. ..+|. .+...+ -...+++.|...+.++.. .++ + | +.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 65 31 12332 222111 001223344455544321 111 0 1 00
Q ss_pred --HHHHHHHHHHHhcC-------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCC---CCHh
Q 048830 191 --FTLVCLLSSCAHVG-------ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF-CVFSRMRK---RDVL 257 (551)
Q Consensus 191 --~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~ 257 (551)
..|...+.---..+ ..+.+..+|++++..- +.+..+|-..+..+...|+.++|. ++|++... .+..
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~ 379 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH
Confidence 12222222211111 1234556788777753 446778888888888889988896 89887653 3556
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCCC------------HhhHHHHHHHHhccCCHHHHHHHHHH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAG---------FHPD------------SITFLGLLCGCSHQGLVEEGVEYFHM 316 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~ 316 (551)
.|-..+....+.|++++|.++|+++.... -.|+ ...|...+....+.|.++.|..+|..
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67888888889999999999999988641 0132 23567777777788899999999999
Q ss_pred hHHhcCCCCCccchhhhhHHHhhcC-CHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC--
Q 048830 317 MVSRYNLKPGIKHYGCLVDLYGRAG-KLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA-- 390 (551)
Q Consensus 317 ~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-- 390 (551)
+.+.. -.+....|...+.+-.+.| +.+.|.++|+.++.. +...|...+......|+.+.|..+|++++...|+
T Consensus 460 A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 460 CRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 97641 1123344444444444544 589999999887765 8888888998888899999999999999998873
Q ss_pred -CcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 391 -SAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 391 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
....|...+..-.+.|..+.+.++.+++.+.-.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456788888888889999999999999976543
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=8.6e-11 Score=112.86 Aligned_cols=183 Identities=8% Similarity=-0.028 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHh-HHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DVL-SWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
++|..+++..++.-.+.+...|..++..+.+.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56666666666521122344666666666666666666666666543 2 232 5666666666666677777777666
Q ss_pred HHcCCCCCHhhHHHHHHHH-hccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----
Q 048830 283 LMAGFHPDSITFLGLLCGC-SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS----- 356 (551)
Q Consensus 283 ~~~g~~p~~~t~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 356 (551)
.+.. +++...|....... ...|++++|..+|+..++.. +-+...|..++..+.+.|++++|..+|++++..
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 6542 22233333222221 12566666766666665431 124555666666666666666666666664431
Q ss_pred --CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 357 --DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 357 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
....|..++......|+.+.|..+++++++..|+++
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 345666666666666666666666666666666544
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=5e-12 Score=134.54 Aligned_cols=159 Identities=15% Similarity=0.145 Sum_probs=120.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Cccchhhh
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCL 333 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 333 (551)
..+|+.+...|.+.|++++|++.|++..+. .|+ ..++..+..+|.+.|++++|+..|++.++ +.| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 455666666777777777777777776664 343 45666777777777777777777777664 345 35667777
Q ss_pred hHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhH
Q 048830 334 VDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410 (551)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 410 (551)
..+|...|++++|++.|++++.. +...|..+..++...|++++|+..|+++++++|+++.++..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 77777777777777777765543 778888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 048830 411 VARTRKLIK 419 (551)
Q Consensus 411 a~~~~~~m~ 419 (551)
|.+.+++..
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887664
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=6.6e-10 Score=109.70 Aligned_cols=258 Identities=12% Similarity=0.007 Sum_probs=152.1
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCcccCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-Cc----hhHHHHHHH
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGLDGF----TLVCLLSSCAHVGALNMGIFLHRIACEMGFV-ES----VYVGNALVD 233 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~ 233 (551)
..+...|++++|...+++........+.. .+..+...+...|++++|...+.+..+.... .+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445556666666655554432111111 2333444455556666666666555442100 01 123455666
Q ss_pred HHHhcCCHHHHHHHHHhcCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHhhHHHHH
Q 048830 234 MYAKCGNLDSAFCVFSRMRK----------R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH--P--DSITFLGLL 298 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 298 (551)
.|...|++++|.+.+++..+ + ...++..+...+...|++++|...+++....... | ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 66777777777766665431 1 1234555666777777777777777776653211 1 123456666
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCccchh-----hhhHHHhhcCCHHHHHHHHhhcCCC-------CHHHHHHHHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG-----CLVDLYGRAGKLEKALEVINTSSPS-------DPVLWRTLLG 366 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~ 366 (551)
..+...|++++|...+++......-......+. ..+..+...|++++|...++++... ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 677777888888888777754311111111111 2234466788888888888775543 1234566777
Q ss_pred HHHhcCcHHHHHHHHHHHHhhcCCC------cchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 367 SCKIHRNVEIGEIAMKNLVQLEAAS------AGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.+...|++++|...++++++..+.. ...+..++.++...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888888888888887754321 23677788889999999999998887754
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=2.8e-10 Score=109.24 Aligned_cols=215 Identities=9% Similarity=0.029 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 048830 70 LQAIFYYNHMLMASLSRPDTFTFTFTLKACE-------RVKAL-------NKCQELHGFVIRSGYERCVVVSTNLMRGYA 135 (551)
Q Consensus 70 ~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 135 (551)
++|+.+|++.+...+ .+...|......+. ..|++ ++|..+|++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 466667777666543 34455555555543 23554 666666666665211234445666666666
Q ss_pred hCCCHHHHHHHhccCCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHH-HhcCChHHHH
Q 048830 136 ANGVIEAARSVFDNMPE--R-DLV-SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC-AHVGALNMGI 210 (551)
Q Consensus 136 ~~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~~~~~~a~ 210 (551)
+.|++++|..+|++..+ | +.. +|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666665543 2 222 56666666666666666666666655432 12222222111111 1134555555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 048830 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FHP 289 (551)
Q Consensus 211 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 289 (551)
.+++.+++.. + .+...|..++..+.+.|+.++|..+|++..... +.|
T Consensus 190 ~~~~~al~~~-p-------------------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 190 KIFELGLKKY-G-------------------------------DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHHHHHHHH-T-------------------------------TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHHHHHhC-C-------------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 5555444432 1 234444445555555555555555555555431 233
Q ss_pred C--HhhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 290 D--SITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 290 ~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
+ ...|..++......|+.+.|..+++++.+
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 23444444444555555555555555543
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=2.9e-11 Score=119.81 Aligned_cols=224 Identities=10% Similarity=0.059 Sum_probs=110.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCc-ccC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-----CC-chhHHH
Q 048830 161 IISCYTQASFHLEALKLYERMRFEDV-GLD----GFTLVCLLSSCAHVGALNMGIFLHRIACEMGF-----VE-SVYVGN 229 (551)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~~-~~~~~~ 229 (551)
....+...|++++|+..|++..+... .+| ..++..+..++...|+++.|...+..+.+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 33445566777777777776654311 122 23455566666666777777666666554210 11 133455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHhhHHH
Q 048830 230 ALVDMYAKCGNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGRGDEAISFFKQMLMA----GFHPDSITFLG 296 (551)
Q Consensus 230 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ 296 (551)
.+..+|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++.... +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 566666666666666666655432 11 234555555666666666666666655541 11112344555
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC---ccchhhhhHHHhhcCC---HHHHHHHHhhcCCC---CHHHHHHHHHH
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPG---IKHYGCLVDLYGRAGK---LEKALEVINTSSPS---DPVLWRTLLGS 367 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~~ll~~ 367 (551)
+...+.+.|++++|..++++..+...-.++ ...+..+...|...|+ +++|...+++ ... ....+..+...
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHH
Confidence 555566666666666666655543211111 1223333444444444 4445444444 222 22223333344
Q ss_pred HHhcCcHHHHHHHHHHHH
Q 048830 368 CKIHRNVEIGEIAMKNLV 385 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~ 385 (551)
|...|++++|...+++++
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 444444444444444433
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=3.9e-11 Score=105.11 Aligned_cols=162 Identities=12% Similarity=-0.026 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 301 (551)
...+..+...|...|++++|.+.|+++.+ .+..+|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34555666677777777777777776654 245566666666666666766666666666542 22344555555555
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 048830 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381 (551)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 381 (551)
...|++++|...++.+.+. . |.+...|..+...+...|++++|...+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~---~------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA---N------------------------------PINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH---C------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc---C------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 5556666666655555432 1 114555566666666667777777777
Q ss_pred HHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 382 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+++++..|.++..+..++.+|...|++++|...++++.+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777766654
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=1.4e-09 Score=107.54 Aligned_cols=219 Identities=14% Similarity=-0.004 Sum_probs=103.8
Q ss_pred HHHhcCChHHHHHHHHHHHHhCC-CC----chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C-----CHhHHHHHH
Q 048830 199 SCAHVGALNMGIFLHRIACEMGF-VE----SVYVGNALVDMYAKCGNLDSAFCVFSRMRK-----R-----DVLSWNSMI 263 (551)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li 263 (551)
.+...|++++|...+..+.+... .+ ...++..+...|...|+++.|...+.+..+ + ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34455566666665555554210 01 133455555556666665555555554321 1 123455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCCccchhhhhH
Q 048830 264 VGYGVHGRGDEAISFFKQMLMA----GFHP-DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY---NLKPGIKHYGCLVD 335 (551)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~ 335 (551)
..|...|++++|++.|++..+. +-.+ ...++..+...|...|++++|...+++..+.. +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 5555666666666655555431 1011 11344555555555666666665555554311 11112444555555
Q ss_pred HHhhcCCHHHHHHHHhhcCCC--------CHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhhcCCCcchHHHHHHHhhh
Q 048830 336 LYGRAGKLEKALEVINTSSPS--------DPVLWRTLLGSCKIHRN---VEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 404 (551)
.|.+.|++++|.+.+++++.. ....+..+...+...++ .++|...+++. ...|.....+..++..|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 566666666666555543321 12233334444444555 44444444431 1112223344555666666
Q ss_pred cCChhHHHHHHHHH
Q 048830 405 TKDEEGVARTRKLI 418 (551)
Q Consensus 405 ~g~~~~a~~~~~~m 418 (551)
.|++++|...+++.
T Consensus 349 ~g~~~~A~~~~~~a 362 (378)
T 3q15_A 349 SCHFEQAAAFYRKV 362 (378)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 66666665555544
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=9.1e-11 Score=102.72 Aligned_cols=169 Identities=16% Similarity=0.112 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHH
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGY 266 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 266 (551)
...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3466777888899999999999999887654 34678889999999999999999999998753 4678899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHH
Q 048830 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346 (551)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 346 (551)
...|++++|...++++.... +.+...+..+...+...|++++|..+++.+.+. .|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~--------------------- 141 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RP--------------------- 141 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT---------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---Cc---------------------
Confidence 99999999999999998863 445677777888888888888888888887653 12
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 347 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
.+...+..+...+...|++++|...++++++..|+++.
T Consensus 142 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 142 ---------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred ---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 23445556666666677777777777777777766554
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=6.6e-11 Score=120.86 Aligned_cols=210 Identities=10% Similarity=-0.049 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH-HHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI-EAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYER 180 (551)
Q Consensus 105 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (551)
++++.+.++...+.. +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+...|.+.|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555666666554432 34666777777777777887 778777776643 3466788888888888888888888888
Q ss_pred hhhCCcccCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--------CCHHH
Q 048830 181 MRFEDVGLDGFTLVCLLSSCAHV---------GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC--------GNLDS 243 (551)
Q Consensus 181 m~~~~~~p~~~t~~~ll~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--------g~~~~ 243 (551)
..+. .|+...+..+..++... |++++|...++++++.. +.+...+..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 8765 46667777788888888 88888888888888865 33577888888888888 88999
Q ss_pred HHHHHHhcCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHh
Q 048830 244 AFCVFSRMRK------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317 (551)
Q Consensus 244 A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 317 (551)
|.+.|++..+ .+...|..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|...+..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999888753 367788889999999999999999999988753 234466778888888899999999888777
Q ss_pred HH
Q 048830 318 VS 319 (551)
Q Consensus 318 ~~ 319 (551)
..
T Consensus 319 ~~ 320 (474)
T 4abn_A 319 KP 320 (474)
T ss_dssp CH
T ss_pred cC
Confidence 43
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=2.6e-10 Score=104.11 Aligned_cols=205 Identities=12% Similarity=0.005 Sum_probs=158.2
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHH
Q 048830 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIV 264 (551)
Q Consensus 188 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 264 (551)
.|...+......+...|++++|...++.+++...+++...+..+..+|...|++++|.+.|++..+ .+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999987546777777799999999999999999998753 35678888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-H-------hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---ccchhhh
Q 048830 265 GYGVHGRGDEAISFFKQMLMAGFHPD-S-------ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG---IKHYGCL 333 (551)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 333 (551)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+++.+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999885 343 3 3577777888889999999999998864 4564 5677778
Q ss_pred hHHHhhcCCH--HHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 334 VDLYGRAGKL--EKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 334 i~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
..+|...|+. ++|..+... +...+..+. ....+.+++|...++++++++|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~~~~----~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLASS----NKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGTTT----CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccC----CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766654 333222211 444444333 344567899999999999999999888877766543
No 81
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=1.1e-08 Score=107.81 Aligned_cols=371 Identities=8% Similarity=-0.020 Sum_probs=253.7
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC---hHHHHHHHHHHHHhC-CCCChh
Q 048830 50 NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA---LNKCQELHGFVIRSG-YERCVV 125 (551)
Q Consensus 50 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~ 125 (551)
+.|..+|..++..+.+.+.++.+..+|+++...-+ .....|..-+..-.+.++ ++.+..+|+..+... .+|++.
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP--~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP--LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 35889999999999999999999999999998754 455667777777778888 999999999998763 137888
Q ss_pred HHHHHHHHHHhCCCH--------HHHHHHhccCC------CC-ChhHHHHHHHHHH---------hcCChHHHHHHHHHh
Q 048830 126 VSTNLMRGYAANGVI--------EAARSVFDNMP------ER-DLVSWNSIISCYT---------QASFHLEALKLYERM 181 (551)
Q Consensus 126 ~~~~li~~y~~~g~~--------~~A~~~~~~m~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m 181 (551)
.|..-+....+.++. +...++|+... ++ +...|...+.... ..++.+.+..+|+..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888877766555543 33446776522 22 3467888776543 234577889999998
Q ss_pred hhCCcccCHHHHH---HHHHHHH----------hcCChHHHHHHHHHHHHh--CCC---------------C--c-----
Q 048830 182 RFEDVGLDGFTLV---CLLSSCA----------HVGALNMGIFLHRIACEM--GFV---------------E--S----- 224 (551)
Q Consensus 182 ~~~~~~p~~~t~~---~ll~~~~----------~~~~~~~a~~~~~~~~~~--g~~---------------~--~----- 224 (551)
+......-..+|. ....... ....++.|...+..+.+. ++. | +
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 8532211122332 2221110 011233344444443321 211 1 0
Q ss_pred -hhHHHHHHHHHHhcC-------CHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHh
Q 048830 225 -VYVGNALVDMYAKCG-------NLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAI-SFFKQMLMAGFHPDSI 292 (551)
Q Consensus 225 -~~~~~~li~~y~~~g-------~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~ 292 (551)
...|...++.--..+ ..+.+..+|++... .+...|-..+.-+...|+.++|. .+|++.... ++.+..
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~ 379 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHH
Confidence 134555555433322 12334566776653 46778888888888999999997 999999874 344455
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcC--------CCCC------------ccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYN--------LKPG------------IKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
.+...+...-..|+++.|..+|+.+++... -.|+ ..+|...++...+.|.++.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566777778889999999999999986310 0132 34688888888899999999999998
Q ss_pred cCCC----CHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 353 SSPS----DPVLWRTLLGSCKI-HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 353 ~~~~----~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
++.. ...+|...+..-.. .++.+.|..+|+.+++..|.++..+...+......|+.+.|+.+|++......
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 6543 34444433333333 35699999999999999999999888999999999999999999999876544
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.25 E-value=4.1e-09 Score=103.90 Aligned_cols=259 Identities=10% Similarity=-0.107 Sum_probs=154.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChh----hHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCC----hhHHHH
Q 048830 59 LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF----TFTFTLKACERVKALNKCQELHGFVIRSGY-ERC----VVVSTN 129 (551)
Q Consensus 59 li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~ 129 (551)
....+...|++++|...+++....... .+.. ++..+...+...|++++|...+.+..+... ..+ ..++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344566788888888888887765432 2222 345555667778888888888887765321 111 123456
Q ss_pred HHHHHHhCCCHHHHHHHhccCCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCc----ccCHHHHH
Q 048830 130 LMRGYAANGVIEAARSVFDNMPE-------R----DLVSWNSIISCYTQASFHLEALKLYERMRFEDV----GLDGFTLV 194 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~t~~ 194 (551)
+...|...|++++|...+++... + ...++..+...+...|++++|...+++...... .....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 66777788888888777765432 1 123455667777778888888888777654221 11234566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCCHHHHHHHHHhcCCCC-------HhHHHH
Q 048830 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESV-YVGN-----ALVDMYAKCGNLDSAFCVFSRMRKRD-------VLSWNS 261 (551)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~-----~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~ 261 (551)
.+...+...|++++|...++........++. ..+. ..+..+...|++++|...+++...++ ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 6667777778888888877777654211111 1111 23344667788888888877766432 123455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMA----GFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666677777777777777766542 111122 134444455556666666666665554
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=9.6e-11 Score=107.02 Aligned_cols=186 Identities=13% Similarity=0.018 Sum_probs=118.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHH
Q 048830 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRK----RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLL 298 (551)
Q Consensus 224 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 298 (551)
++..+..+...|.+.|++++|.+.|++..+ ++...|..+..++...|++++|+..|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 456666777777777777777777776542 55666666777777777777777777777764 343 35666677
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-Cc-------cchhhhhHHHhhcCCHHHHHHHHhhcCCCC-----HHHHHHHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKP-GI-------KHYGCLVDLYGRAGKLEKALEVINTSSPSD-----PVLWRTLL 365 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ll 365 (551)
..+...|++++|...+++..+. .| +. ..|..+...+...|++++|.+.|++++..+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 7777777777777777777653 23 22 346666666677777777777777655552 23445555
Q ss_pred HHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 366 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
..+.. .+...++++..+.+.++..|..+ .....+.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 55533 33444555666655554444332 234445569999999988763
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.16 E-value=1.7e-10 Score=122.76 Aligned_cols=160 Identities=15% Similarity=0.177 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCG 300 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~ 300 (551)
...++.|..+|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|+..|++..+. .|+ ...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 55667777777777777777777776542 35667777777777777777777777777764 343 4667777777
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
+...|++++|.+.|++.++ +.| +...|..+..+|.+.|++++|++.|++++.. +...|..+..++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 7777888888877777764 345 4667777777888888888888877775543 77788888888888888888
Q ss_pred HHHHHHHHHhhcC
Q 048830 377 GEIAMKNLVQLEA 389 (551)
Q Consensus 377 a~~~~~~~~~~~p 389 (551)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 8888888877644
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=4.1e-09 Score=100.17 Aligned_cols=157 Identities=9% Similarity=-0.099 Sum_probs=82.0
Q ss_pred HHHHHhcCChHHHHHHHHHhhhC----CcccC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC---C--chhHHHHH
Q 048830 162 ISCYTQASFHLEALKLYERMRFE----DVGLD-GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV---E--SVYVGNAL 231 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~--~~~~~~~l 231 (551)
...|...|++++|+..|.+..+. |-.++ ..+|..+..+|...|++++|...++..++.... + ...+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555666666666666655432 21111 345556666666666666666666655542100 0 02345555
Q ss_pred HHHHHhc-CCHHHHHHHHHhcCC--C---C----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh------hHH
Q 048830 232 VDMYAKC-GNLDSAFCVFSRMRK--R---D----VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI------TFL 295 (551)
Q Consensus 232 i~~y~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~ 295 (551)
..+|... |++++|...|++..+ | + ..+|+.+...|...|++++|+..|++..+........ .+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 6666664 666666666655432 0 1 2345555566666666666666666665532211111 344
Q ss_pred HHHHHHhccCCHHHHHHHHHHhH
Q 048830 296 GLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 296 ~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
.+..++...|++++|...|++..
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555666666666666554
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=1.3e-09 Score=103.72 Aligned_cols=211 Identities=10% Similarity=-0.056 Sum_probs=151.2
Q ss_pred ChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----CCCCc-hhHHHHHHHHHHhcCCHHHH
Q 048830 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM----GFVES-VYVGNALVDMYAKCGNLDSA 244 (551)
Q Consensus 170 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~y~~~g~~~~A 244 (551)
++++|...|.+. ...+...|++++|...+....+. |..++ ..+++.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477888887766 34577889999999999888764 32222 56888999999999999999
Q ss_pred HHHHHhcCC-----CC----HhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHhccCCHHH
Q 048830 245 FCVFSRMRK-----RD----VLSWNSMIVGYGVH-GRGDEAISFFKQMLMAGFH-PD----SITFLGLLCGCSHQGLVEE 309 (551)
Q Consensus 245 ~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~ 309 (551)
...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 998887653 12 35788888889986 9999999999988763110 01 3467788888999999999
Q ss_pred HHHHHHHhHHhcCCCCCcc-----chhhhhHHHhhcCCHHHHHHHHhhcCCCCH--------HHHHHHHHHHH--hcCcH
Q 048830 310 GVEYFHMMVSRYNLKPGIK-----HYGCLVDLYGRAGKLEKALEVINTSSPSDP--------VLWRTLLGSCK--IHRNV 374 (551)
Q Consensus 310 a~~~~~~~~~~~~~~p~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~ll~~~~--~~g~~ 374 (551)
|...|++..+...-.+... .|..+..++...|++++|...|++++..++ ..+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998876421111211 456677788889999999999988666421 13444555554 45678
Q ss_pred HHHHHHHHHHHhhcCCCcchH
Q 048830 375 EIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 375 ~~a~~~~~~~~~~~p~~~~~~ 395 (551)
++|...|+++.+++|.....+
T Consensus 257 ~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHhccCCccHHHHHHHH
Confidence 888888888777777654333
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=7.9e-11 Score=110.85 Aligned_cols=153 Identities=15% Similarity=0.078 Sum_probs=90.3
Q ss_pred hcCChHHHHHHHHHhhh-------CCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------CCCC-chhHHHHHH
Q 048830 167 QASFHLEALKLYERMRF-------EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM------GFVE-SVYVGNALV 232 (551)
Q Consensus 167 ~~g~~~~A~~~~~~m~~-------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~li 232 (551)
..|++++|+.+|++..+ ...+....++..+...+...|++++|...+..+++. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666655443 121223446666777777777777777777776654 2122 245666677
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HhhH
Q 048830 233 DMYAKCGNLDSAFCVFSRMRK-------R----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMA------GFHPD-SITF 294 (551)
Q Consensus 233 ~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~ 294 (551)
.+|...|++++|.+.|++..+ + ...+|..+...|...|++++|+..|+++... +-.|+ ..++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 777777777777777665532 1 2345566666666667777777666666553 11222 2455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 295 LGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 295 ~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
..+...+...|++++|..+++++.+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666666666666654
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=4.7e-09 Score=98.53 Aligned_cols=150 Identities=17% Similarity=0.075 Sum_probs=109.5
Q ss_pred HhCCCHHHHHHHhccCCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhC------Cccc-CHHHHHHH
Q 048830 135 AANGVIEAARSVFDNMPE-------R----DLVSWNSIISCYTQASFHLEALKLYERMRFE------DVGL-DGFTLVCL 196 (551)
Q Consensus 135 ~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~l 196 (551)
...|++++|+..|++..+ + ...+|..+...|...|++++|+..|.+..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666554432 2 2456888888889999999999999887653 2222 34577788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------CHhH
Q 048830 197 LSSCAHVGALNMGIFLHRIACEM------GF-VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR-----------DVLS 258 (551)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~ 258 (551)
...+...|++++|...+..+.+. .. +....++..+...|...|++++|.+.|++..+. ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888899999999988888765 11 233667788888899999999998888876421 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
+..+...|...|++++|...|++...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888888899999999999888775
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=3.9e-09 Score=98.44 Aligned_cols=205 Identities=10% Similarity=-0.038 Sum_probs=147.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HhhH
Q 048830 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-D---VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF-HPD-SITF 294 (551)
Q Consensus 223 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~ 294 (551)
.+...+-.+...+.+.|++++|...|+++.+ | + ..++..+..+|...|++++|+..|++...... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3456677778888899999999999998864 3 3 56788888889999999999999999888531 122 3456
Q ss_pred HHHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 048830 295 LGLLCGCSH--------QGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365 (551)
Q Consensus 295 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll 365 (551)
..+..++.. .|++++|...|+++.+. .|+ ......+... ...... ....+..+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~-------~~~~~~-------~~~~~~~la 155 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKI-------RELRAK-------LARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHH-------HHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHH-------HHHHHH-------HHHHHHHHH
Confidence 667777777 88999999999988765 243 2222221111 111111 122356778
Q ss_pred HHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHHHHHhhhc----------CChhHHHHHHHHHHhCCCccCCceeEE
Q 048830 366 GSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLLATIYACT----------KDEEGVARTRKLIKSNGIKTTPGWSWI 432 (551)
Q Consensus 366 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~~ 432 (551)
..+...|++++|...++++++..|++ +..+..++.+|... |++++|...++++.+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 88999999999999999999999985 45888999999877 899999999998876321
Q ss_pred EECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHh
Q 048830 433 EIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF 467 (551)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 467 (551)
.++...+....+.++...+..
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556666777777666654
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=1.2e-10 Score=98.85 Aligned_cols=137 Identities=13% Similarity=0.027 Sum_probs=89.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCH
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKL 343 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 343 (551)
+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|...|++.++ +.| +...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCch
Confidence 34445555666555554432 222 23444555666666666666666666653 234 455666666666666777
Q ss_pred HHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHH-HHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 344 EKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEI-AMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 344 ~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
++|...|++++.. ++.+|..+...+...|+.++|.. .++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7776666654432 77788888888888888766554 4588889999999888888888887775
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=1.2e-08 Score=92.89 Aligned_cols=182 Identities=9% Similarity=-0.033 Sum_probs=126.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh----h
Q 048830 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD----VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI----T 293 (551)
Q Consensus 224 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 293 (551)
+...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 344566677788889999999999998763 32 2467778889999999999999999988753 3322 3
Q ss_pred HHHHHHHHhc------------------cCCHHHHHHHHHHhHHhcCCCCCc-cchhhhhHHHhhcCCHHHHHHHHhhcC
Q 048830 294 FLGLLCGCSH------------------QGLVEEGVEYFHMMVSRYNLKPGI-KHYGCLVDLYGRAGKLEKALEVINTSS 354 (551)
Q Consensus 294 ~~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~ 354 (551)
+..+..++.. .|+.++|...|+.+++. .|+. ..+.++.. .+.+.. .
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~------~-- 145 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKD------R-- 145 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHH------H--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHH------H--
Confidence 4444444443 45677777777777643 3432 22211111 000000 0
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc---chHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA---GDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 355 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
.......+...+...|++++|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 146 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 146 --LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 011223456778899999999999999999999976 57899999999999999999999998876543
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.02 E-value=4.6e-09 Score=98.00 Aligned_cols=201 Identities=11% Similarity=-0.029 Sum_probs=141.0
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----CHhHH
Q 048830 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE--SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R----DVLSW 259 (551)
Q Consensus 188 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~~ 259 (551)
.+...+-.....+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+ | ...++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345667777888899999999999999999864221 156788899999999999999999998863 2 24567
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccch
Q 048830 260 NSMIVGYGV--------HGRGDEAISFFKQMLMAGFHPDSI-TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330 (551)
Q Consensus 260 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 330 (551)
..+..++.. .|++++|+..|++.... .|+.. ....+ ..+..+... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHH
Confidence 778888888 99999999999999985 34432 22111 111111000 01124
Q ss_pred hhhhHHHhhcCCHHHHHHHHhhcCC---C---CHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhhcCCCcc-
Q 048830 331 GCLVDLYGRAGKLEKALEVINTSSP---S---DPVLWRTLLGSCKIH----------RNVEIGEIAMKNLVQLEAASAG- 393 (551)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~~~~---~---~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~- 393 (551)
..+...|.+.|++++|...|++++. . ....+..+..++... |++++|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 4567777888888888888776432 2 344666777777655 8999999999999999999864
Q ss_pred --hHHHHHHHhhhcCChh
Q 048830 394 --DYVLLATIYACTKDEE 409 (551)
Q Consensus 394 --~~~~l~~~~~~~g~~~ 409 (551)
+...+..++...|+++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 3444555554444443
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=4.1e-09 Score=86.50 Aligned_cols=129 Identities=18% Similarity=0.257 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 337 (551)
+|..+...+...|++++|+.+|+++.... +.+...+..+...+...|++++|..+++++.+. .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---D------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C-------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---C-------------
Confidence 45555666666666666666666665542 223444555555555555555555555555432 1
Q ss_pred hhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHH
Q 048830 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 417 (551)
|.+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|...+++
T Consensus 66 -----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 66 -----------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp -----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -----------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 114455666666667777777777777777777777777777777777777777777777777
Q ss_pred HHh
Q 048830 418 IKS 420 (551)
Q Consensus 418 m~~ 420 (551)
+.+
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=9e-09 Score=109.89 Aligned_cols=167 Identities=8% Similarity=-0.114 Sum_probs=139.9
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 048830 236 AKCGNLDSAFCVFSRMR-----------KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304 (551)
Q Consensus 236 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 304 (551)
...|++++|.+.|++.. ..+...|..+...|...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999998876 2456788888899999999999999999998853 33557788888899999
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHH
Q 048830 305 GLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIA 380 (551)
Q Consensus 305 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~ 380 (551)
|++++|...|+++.+ +.| +...+..+..+|.+.|++++ .+.|++++.. +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999875 345 57788889999999999999 8888876543 888999999999999999999999
Q ss_pred HHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 381 MKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 381 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
++++++++|+++.++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999988766
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=5.1e-08 Score=91.36 Aligned_cols=107 Identities=15% Similarity=0.006 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-----RDVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
+...++..++.+ .++......+..+|...|++++|.+++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444433332 22333334455555555555555555555422 133444445555555555555555555555
Q ss_pred HcCCCC-----CHhhHHHHHHHHh--c--cCCHHHHHHHHHHhH
Q 048830 284 MAGFHP-----DSITFLGLLCGCS--H--QGLVEEGVEYFHMMV 318 (551)
Q Consensus 284 ~~g~~p-----~~~t~~~ll~~~~--~--~g~~~~a~~~~~~~~ 318 (551)
+. .| +..+...|..++. . .++..+|..+|+++.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~ 205 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS 205 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 43 33 2333344443321 1 124555555555553
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=2.3e-08 Score=89.95 Aligned_cols=171 Identities=9% Similarity=-0.047 Sum_probs=127.4
Q ss_pred HHHHHHhcC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC----CHHHHHHHHHHhH
Q 048830 244 AFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG----LVEEGVEYFHMMV 318 (551)
Q Consensus 244 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~ 318 (551)
|.+.|++.. ..++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444332 2456666667777777777777777777777655 45556666666666 5 7888888888775
Q ss_pred HhcCCCCCccchhhhhHHHhh----cCCHHHHHHHHhhcCCC-C----HHHHHHHHHHHHh----cCcHHHHHHHHHHHH
Q 048830 319 SRYNLKPGIKHYGCLVDLYGR----AGKLEKALEVINTSSPS-D----PVLWRTLLGSCKI----HRNVEIGEIAMKNLV 385 (551)
Q Consensus 319 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~----~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 385 (551)
+. -+...+..|..+|.. .+++++|.++|+++... + +..+..|...|.. .++.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 43 245566677777766 78889999999887777 5 7888888888888 789999999999999
Q ss_pred hhcCCCcchHHHHHHHhhhc-C-----ChhHHHHHHHHHHhCCC
Q 048830 386 QLEAASAGDYVLLATIYACT-K-----DEEGVARTRKLIKSNGI 423 (551)
Q Consensus 386 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 423 (551)
++ |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66778899999999765 3 89999999998887664
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=9.4e-09 Score=84.28 Aligned_cols=124 Identities=21% Similarity=0.309 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
..+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|...|+++...+ +.+...+..+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3577889999999999999999998753 467889999999999999999999999998864 345667778888888
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
..|++++|..+++.+.+. .+.+...+..++..|.+.|++++|.+.+++
T Consensus 81 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 999999999998888653 112333444444444444444444444443
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=8e-09 Score=97.86 Aligned_cols=174 Identities=8% Similarity=-0.033 Sum_probs=130.4
Q ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 048830 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321 (551)
Q Consensus 242 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 321 (551)
+...+.+......+...+..+...+.+.|++++|+..|++..... +-+...+..+...+...|++++|...++.+..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 344444555444455666677777888888888888888887752 22446677778888888888888888887753
Q ss_pred CCCCCccchhh-hhHHHhhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC--cchH
Q 048830 322 NLKPGIKHYGC-LVDLYGRAGKLEKALEVINTSS---PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDY 395 (551)
Q Consensus 322 ~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~ 395 (551)
..|+...... ....+...++.++|.+.+++++ |.+...+..+...+...|++++|...++++++.+|++ +..+
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 3454332222 2223556677777777776644 3388999999999999999999999999999999988 8899
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHH
Q 048830 396 VLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 396 ~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
..|+.+|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999998887653
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.92 E-value=1.4e-07 Score=88.45 Aligned_cols=255 Identities=12% Similarity=0.070 Sum_probs=151.9
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 048830 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179 (551)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 179 (551)
--.|++..+..- ..+...........-+.++|...|+++.. .-..|.......+.. |...+ |+..|+
T Consensus 24 fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-----~~~~~~~~a~~~la~-~~~~~----a~~~l~ 90 (310)
T 3mv2_B 24 YYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ-----DPTSKLGKVLDLYVQ-FLDTK----NIEELE 90 (310)
T ss_dssp HTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC-----CSSSTTHHHHHHHHH-HHTTT----CCHHHH
T ss_pred HHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC-----CCCCHHHHHHHHHHH-Hhccc----HHHHHH
Confidence 346788777662 22211111222333345777777776642 112233333333333 33322 778888
Q ss_pred HhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C--
Q 048830 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF-VESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-- 254 (551)
Q Consensus 180 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-- 254 (551)
+....+ .++..++..+..++...|++++|.+++...+..+. .-+...+..++..|.+.|+.+.|.+.+++|.+ |
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~ 169 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT 169 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 777655 55666666778888888999999988888766553 23567777888889999999999999988864 3
Q ss_pred ---CHhHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCc
Q 048830 255 ---DVLSWNSMIVG--YGVHG--RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327 (551)
Q Consensus 255 ---~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 327 (551)
+..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+.+ |+.
T Consensus 170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~---p~~ 244 (310)
T 3mv2_B 170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY---YSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH---HHT
T ss_pred cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc---ccc
Confidence 13445555555 33334 888999999998654 4553444455557788888888888887664321 100
Q ss_pred cchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
++-+-+ -|.|+.+...++......|+ +|.++++++.+..|++|...
T Consensus 245 -------------~~k~~~-------~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 245 -------------EQKENA-------VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp -------------TTCHHH-------HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred -------------cccccC-------CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 000000 01134444344444444454 66777777778888776443
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=1.8e-09 Score=91.47 Aligned_cols=121 Identities=16% Similarity=0.038 Sum_probs=102.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcC
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHR 372 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g 372 (551)
|...+...|++++|+..++... ...| +...+..+..+|.+.|++++|++.|++++.. ++.+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4455667889999999998875 4455 4566778999999999999999999986544 8999999999999999
Q ss_pred cHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHH-HHHHHh
Q 048830 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART-RKLIKS 420 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 420 (551)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887775 476655
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=9.7e-09 Score=107.50 Aligned_cols=158 Identities=12% Similarity=0.047 Sum_probs=125.7
Q ss_pred cCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 048830 238 CGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314 (551)
Q Consensus 238 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 314 (551)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998874 357889999999999999999999999999853 334678888999999999999999999
Q ss_pred HHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhh
Q 048830 315 HMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIH---RNVEIGEIAMKNLVQL 387 (551)
Q Consensus 315 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 387 (551)
++..+. .| +...+..+..+|.+.|++++|.+.+++++.. +...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999864 45 5778899999999999999999999985543 888999999999999 9999999999999999
Q ss_pred cCCCcchHHHHH
Q 048830 388 EAASAGDYVLLA 399 (551)
Q Consensus 388 ~p~~~~~~~~l~ 399 (551)
+|.+...|..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999998888776
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.88 E-value=2.8e-08 Score=106.09 Aligned_cols=188 Identities=15% Similarity=0.010 Sum_probs=146.6
Q ss_pred HhcCChHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhc
Q 048830 201 AHVGALNMGIFLHRIAC--------EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVH 269 (551)
Q Consensus 201 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 269 (551)
...|++++|.+.++.+. +.. +.+...+..+..+|.+.|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67889999999999887 432 34567888899999999999999999998764 4778899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHH
Q 048830 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALE 348 (551)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 348 (551)
|++++|+..|++..+.. +-+...+..+..++.+.|++++ ...|+++.+. .| +...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999863 2245778889999999999999 9999998753 45 56788999999999999999999
Q ss_pred HHhhcCCC---CHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhhcCCCcch
Q 048830 349 VINTSSPS---DPVLWRTLLGSCKIHRN-----VEIGEIAMKNLVQLEAASAGD 394 (551)
Q Consensus 349 ~~~~~~~~---~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 394 (551)
.|++++.. +...|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 99997765 56778888888766665 344444444444454554443
No 103
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=1.9e-07 Score=88.56 Aligned_cols=159 Identities=9% Similarity=0.029 Sum_probs=116.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCCCHh----hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhh
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAG-FHPDSI----TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGC 332 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 332 (551)
.+..+...|++++|..++++..... ..|+.. .+..+...+...+++++|...|+.+.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 223321 2334666667777888888888888763222222 225778
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCC-------C---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC------cchHH
Q 048830 333 LVDLYGRAGKLEKALEVINTSSP-------S---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS------AGDYV 396 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~-------~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 396 (551)
+...|...|++++|.+.|++++. . ...++..+...|...|++++|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888888888888888877552 2 44578889999999999999999999999875432 56899
Q ss_pred HHHHHhhhcCC-hhHHHHHHHHHHh
Q 048830 397 LLATIYACTKD-EEGVARTRKLIKS 420 (551)
Q Consensus 397 ~l~~~~~~~g~-~~~a~~~~~~m~~ 420 (551)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999887753
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=1.8e-08 Score=96.53 Aligned_cols=178 Identities=12% Similarity=0.064 Sum_probs=114.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HhhHHHHH
Q 048830 233 DMYAKCGNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGRGDEAISFFKQMLMAG---FHPD--SITFLGLL 298 (551)
Q Consensus 233 ~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll 298 (551)
..|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666665554432 11 2356666777777777777777777665421 0121 24566777
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC----CccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----C----HHHHHHHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKP----GIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----D----PVLWRTLL 365 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~ll 365 (551)
..|.. |++++|...|++..+.+.-.. ...++..+..+|.+.|++++|++.|++++.. + ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 77777 888888888887765321111 1456777888888888888888888875543 1 23566666
Q ss_pred HHHHhcCcHHHHHHHHHHHHhhcCCCcch-----HHHHHHHhhhcCChhHHHH
Q 048830 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGD-----YVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 366 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 413 (551)
..+...|++++|...+++.+ +.|..... ...++.++ ..|+.+.+..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 77777899999999999999 88865432 33455555 4667665555
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=1.9e-08 Score=96.24 Aligned_cols=195 Identities=11% Similarity=-0.012 Sum_probs=150.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 203 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
.|++++|.+++++..+.... . .+...+++++|...|.+ ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 56777888888877764211 1 01115889999888776 356788999999999999988
Q ss_pred HHcCC---CC-C-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CC--CccchhhhhHHHhhcCCHHHHHHHHhhc
Q 048830 283 LMAGF---HP-D-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL--KP--GIKHYGCLVDLYGRAGKLEKALEVINTS 353 (551)
Q Consensus 283 ~~~g~---~p-~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 353 (551)
.+... .+ . ..+|..+...|...|++++|...|++..+.+.- .| ...++..+..+|.. |++++|++.|+++
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 76311 11 1 357888889999999999999999988754211 11 24677888999988 9999999999986
Q ss_pred CCC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc------chHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 354 SPS---------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA------GDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 354 ~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
+.. ...++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 654 156788899999999999999999999999876543 36777888899999999999999988
Q ss_pred H
Q 048830 419 K 419 (551)
Q Consensus 419 ~ 419 (551)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 6
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.87 E-value=5.5e-09 Score=88.18 Aligned_cols=101 Identities=8% Similarity=-0.059 Sum_probs=89.2
Q ss_pred CCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH
Q 048830 322 NLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397 (551)
Q Consensus 322 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 397 (551)
.+.| +...+..+...+.+.|++++|.+.|++++.. ++..|..+..++...|++++|...|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4556 4567778888888999999999998875533 89999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 398 LATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 398 l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
++.+|...|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987643
No 107
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.85 E-value=4e-06 Score=85.43 Aligned_cols=351 Identities=7% Similarity=-0.049 Sum_probs=172.6
Q ss_pred ccHHHHHHHHHHcCCCCChHHHHHHHhcCC--CCChhhHHHHHHHHHcCCC-hhHHHHHHHHHHHc-CCCCCChhhHHHH
Q 048830 20 EIHGEWLLNSYAISVSSSLSYAQLLFNQIQ--NPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMA-SLSRPDTFTFTFT 95 (551)
Q Consensus 20 ~~~~~~li~~~~~~~~g~~~~A~~lf~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-~~~~pd~~~~~~l 95 (551)
-.+|...+..+-. |+.+.|..+|++.. .|++..|...+....+.+. .+....+|+..+.. |...++...|...
T Consensus 15 R~vyer~l~~~P~---~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMS---KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 4466777777754 78999999998654 4788899888887766653 45667788877654 4321345566666
Q ss_pred HHHHh----ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------------CCCHHHHHHHhccCCC----CC
Q 048830 96 LKACE----RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA-------------NGVIEAARSVFDNMPE----RD 154 (551)
Q Consensus 96 l~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~~~~m~~----~~ 154 (551)
+..+. ..++.+.+..+|+.++......-...|......-.. .+.+..|..+++.+.. .+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 65543 235678888999988873211111222222111100 0112223333322211 13
Q ss_pred hhHHHHHHHHHHhcC--C-----hHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 048830 155 LVSWNSIISCYTQAS--F-----HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227 (551)
Q Consensus 155 ~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 227 (551)
...|...+.--...+ - .+.+..+|+++.... +.+...|...+.-+...|+++.|..+++..++. +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 335554444322211 0 234556676666532 333455555555666677777777777777776 333333
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHhcC------------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 048830 228 GNALVDMYAKCGNLDSA-FCVFSRMR------------KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 294 (551)
+.. |+...+.++. ..+.+... ......|...+....+.++.+.|..+|++. .. ..++...|
T Consensus 249 ~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~ 322 (493)
T 2uy1_A 249 SLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVF 322 (493)
T ss_dssp HHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHH
T ss_pred HHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHH
Confidence 222 2221111111 11111110 001133555555555555666666666666 21 11122222
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCc
Q 048830 295 LGLLCGCS-HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 295 ~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 373 (551)
......-. ..++.+.|..+|+...+.++-. +..+...++...+.|+.+.|..+|++ .......|...+..-..+|+
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er-~~k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEFFLFLLRIGDEENARALFKR-LEKTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHH-SCCBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCC
Confidence 21111111 1224666666666665543221 22344455555556666666666666 33345555555555555555
Q ss_pred HHHHHHHHHHHH
Q 048830 374 VEIGEIAMKNLV 385 (551)
Q Consensus 374 ~~~a~~~~~~~~ 385 (551)
.+.+..++++..
T Consensus 400 ~~~~r~v~~~~~ 411 (493)
T 2uy1_A 400 MELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=2.5e-08 Score=104.41 Aligned_cols=148 Identities=13% Similarity=-0.024 Sum_probs=104.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 048830 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFF 279 (551)
Q Consensus 203 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 279 (551)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888888888887754 23467888888899999999999999988754 35678888888999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhc---CCHHHHHHHHhhcCC
Q 048830 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRA---GKLEKALEVINTSSP 355 (551)
Q Consensus 280 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~ 355 (551)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .| +...+..+..++... |++++|.+.+++++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9888763 334577888888899999999999999988754 34 467788888888888 999999988887443
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=2.6e-08 Score=81.30 Aligned_cols=106 Identities=10% Similarity=0.006 Sum_probs=67.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHH
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSC 368 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~ 368 (551)
.+......+.+.|++++|...|++.++. .| +...|..+..+|.+.|++++|++.|++++.. +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4445555666666666666666665532 23 4555566666666666666666666654432 666777777777
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 401 (551)
...|++++|...|+++++++|+++.++..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777777777777777777777777766666554
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=7.6e-08 Score=83.71 Aligned_cols=155 Identities=10% Similarity=-0.026 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 304 (551)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.... .+...+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~~~-- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAKLE-- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHHHH--
Confidence 44555666777777777777777664 35566667777777777777777777666543 2322211 1111000
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhc---CCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 048830 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS---SPSDPVLWRTLLGSCKIHRNVEIGEIAM 381 (551)
Q Consensus 305 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 381 (551)
+...+...+|...++++ -|.+...+..+...+...|++++|...+
T Consensus 84 --------------------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 84 --------------------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp --------------------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00001111233333332 3447888888999999999999999999
Q ss_pred HHHHhhcCCC--cchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 382 KNLVQLEAAS--AGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 382 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+++++.+|+. +..+..++.++...|+.++|...+++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 9999999875 5589999999999999999999887654
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.78 E-value=1.1e-08 Score=86.14 Aligned_cols=100 Identities=9% Similarity=-0.046 Sum_probs=86.0
Q ss_pred CCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH
Q 048830 322 NLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397 (551)
Q Consensus 322 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 397 (551)
.+.| +...+..+...+.+.|++++|...|++++. .+...|..+..++...|++++|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3445 456677778888889999999988887443 388899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCChhHHHHHHHHHHhC
Q 048830 398 LATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 398 l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
++.+|...|++++|...+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988653
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=1.6e-08 Score=82.58 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=90.2
Q ss_pred CCCC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 323 LKPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 323 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
+.|+ ...+......|.+.|++++|++.|++++.. +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4553 466778899999999999999999986644 899999999999999999999999999999999999999999
Q ss_pred HHHhhhcCChhHHHHHHHHHHhC
Q 048830 399 ATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=7.3e-08 Score=86.46 Aligned_cols=119 Identities=10% Similarity=-0.018 Sum_probs=69.0
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcH
Q 048830 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNV 374 (551)
Q Consensus 298 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~ 374 (551)
...+...|++++|...|++. +.|+...+..+...|.+.|++++|.+.|++++. .+...|..+..++...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 33444445555555544433 123444455555555555555555555544332 2555666666666666666
Q ss_pred HHHHHHHHHHHhhcCCCc----------------chHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 375 EIGEIAMKNLVQLEAASA----------------GDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 375 ~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
++|...++++++..|.++ ..+..++.+|...|++++|...+++..+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666666555 66677777777777777777777766553
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=3.1e-08 Score=93.47 Aligned_cols=189 Identities=10% Similarity=-0.075 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
..+..+...|.+.|++++|...|++..+ .+...|..+..+|...|++++|+..+++..+.. +-+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444455555555666666555555431 245555666666666666666666666655531 223345556666666
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 048830 303 HQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381 (551)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 381 (551)
..|++++|...|+...+. .| +...+...+....+..+.......-....+.+..+...+.... .|+.++|...+
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence 666666666666665532 22 1222223333322222222222222221333555544443322 58888999999
Q ss_pred HHHHhhcCCCcchHHHHHHHhhhc-CChhHHHHHHHHHHh
Q 048830 382 KNLVQLEAASAGDYVLLATIYACT-KDEEGVARTRKLIKS 420 (551)
Q Consensus 382 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 420 (551)
+++++++|++......+...+.+. +++++|.++|..+.+
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999998877777777777777 778999999987765
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=2.1e-07 Score=83.59 Aligned_cols=171 Identities=12% Similarity=-0.093 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-RDVLSWNSMIVGYGVHG----RGDEAISFFKQML 283 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 283 (551)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++..+ .++.++..+...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444455555543 455666666666666777777777766543 355666666666665 5 6777777777776
Q ss_pred HcCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCC---ccchhhhhHHHhh----cCCHHHHHHHHhh
Q 048830 284 MAGFHPDSITFLGLLCGCSH----QGLVEEGVEYFHMMVSRYNLKPG---IKHYGCLVDLYGR----AGKLEKALEVINT 352 (551)
Q Consensus 284 ~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 352 (551)
+.| +...+..|...|.. .+++++|..+|++..+ ..|+ +..+..|..+|.. .+++++|..+|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 654 45556666666665 6677777777777753 2332 5666677777776 6778888888777
Q ss_pred cCCC--CHHHHHHHHHHHHhc-C-----cHHHHHHHHHHHHhhcC
Q 048830 353 SSPS--DPVLWRTLLGSCKIH-R-----NVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 353 ~~~~--~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 389 (551)
+... +...+..|...|... | +.++|...++++.+.+.
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 5543 566677777766543 2 78888888888877753
No 116
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.75 E-value=1.6e-07 Score=84.06 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=10.2
Q ss_pred HHHcCCChhHHHHHHHHHHHc
Q 048830 62 AFAQSLSPLQAIFYYNHMLMA 82 (551)
Q Consensus 62 ~~~~~g~~~~A~~l~~~m~~~ 82 (551)
.+...|++++|+..|++....
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~ 33 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIAL 33 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 344445555555555554443
No 117
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.75 E-value=2e-07 Score=83.45 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=11.5
Q ss_pred HHHHHhcCChHHHHHHHHHhhh
Q 048830 162 ISCYTQASFHLEALKLYERMRF 183 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~ 183 (551)
...+...|++++|+..|++..+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455555555555555544
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=2.5e-07 Score=87.73 Aligned_cols=162 Identities=9% Similarity=-0.017 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H----hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----cc
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-S----ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IK 328 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 328 (551)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...++...+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777888888888777766422111 1 12334555667778888888888877643111111 34
Q ss_pred chhhhhHHHhhcCCHHHHHHHHhhcCC------C----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC------Cc
Q 048830 329 HYGCLVDLYGRAGKLEKALEVINTSSP------S----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA------SA 392 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 392 (551)
+|+.+...|...|++++|.+.|++++. . ...++..+...|...|++++|...+++++++.+. -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677788888888888888888877552 1 2257888889999999999999999999886532 15
Q ss_pred chHHHHHHHhhhcCChhHH-HHHHHHHH
Q 048830 393 GDYVLLATIYACTKDEEGV-ARTRKLIK 419 (551)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 419 (551)
.+|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77777664
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=2.4e-07 Score=80.48 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHH-HHh
Q 048830 127 STNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS-CAH 202 (551)
Q Consensus 127 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~ 202 (551)
+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34455667777777777777777664 34566777777777777777777777766543 2333222111111 111
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---HhHHHHHHHHHHhcCChHHHHH
Q 048830 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD---VLSWNSMIVGYGVHGRGDEAIS 277 (551)
Q Consensus 203 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~ 277 (551)
.+....+...++.+++.. +.+...+..+..+|...|++++|...|+++.+ |+ ...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 122223556666666543 22456666667777777777777777766543 21 3366666666777777777766
Q ss_pred HHHHHH
Q 048830 278 FFKQML 283 (551)
Q Consensus 278 ~~~~m~ 283 (551)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.72 E-value=8.2e-07 Score=83.89 Aligned_cols=160 Identities=9% Similarity=-0.026 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHH-H
Q 048830 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC-L 196 (551)
Q Consensus 121 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l 196 (551)
+.+...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|...|++.... .|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 33444455555556666666666666655432 23445555666666666666666666555432 233322211 1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---HhHHHHHHHHHHhcCC
Q 048830 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD---VLSWNSMIVGYGVHGR 271 (551)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~ 271 (551)
...+...+..+.|...++...+.. +.+...+..+...|...|++++|.+.|.++.+ |+ ...+..++..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 222444555555666666665553 23455666666666666777777666666543 21 4566667777777777
Q ss_pred hHHHHHHHHHHH
Q 048830 272 GDEAISFFKQML 283 (551)
Q Consensus 272 ~~~A~~~~~~m~ 283 (551)
.++|...|++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777776666544
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.71 E-value=1.1e-06 Score=83.03 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=76.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCC----
Q 048830 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE--EGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGK---- 342 (551)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~---- 342 (551)
+++++++.+++++.+.. +-+...++.-...+.+.|.++ ++.++++.+++. .| |-..|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchh
Confidence 34444445444444432 123333333333333444444 444554444432 12 33333333333333333
Q ss_pred --HHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcH-HHHHHHHHHHHhhc---CCCcchHHHHHHHhhhcCChhHHHH
Q 048830 343 --LEKALEVINTSSPS---DPVLWRTLLGSCKIHRNV-EIGEIAMKNLVQLE---AASAGDYVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 343 --~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~ 413 (551)
++++++.+++++.. |...|+.+...+...|+. +....+.+++++++ |.++.++..++.+|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 55566555543322 677777766666666553 33445566655554 6666777777777777777777777
Q ss_pred HHHHHHh
Q 048830 414 TRKLIKS 420 (551)
Q Consensus 414 ~~~~m~~ 420 (551)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777654
No 122
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.71 E-value=2e-07 Score=84.58 Aligned_cols=183 Identities=11% Similarity=-0.026 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-H---hHHHH
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE--SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD-V---LSWNS 261 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 261 (551)
...+..+...+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|+++.+ |+ . .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566778889999999999999999864322 135788889999999999999999999763 32 2 24555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 048830 262 MIVGYGV------------------HGRGDEAISFFKQMLMAGFHPDSIT-FLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322 (551)
Q Consensus 262 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 322 (551)
+..++.. .|+.++|+..|+++.+. .|+... ..... .. ..+...+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l------~~~~~~~~~--- 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RL------VFLKDRLAK--- 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HH------HHHHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HH------HHHHHHHHH---
Confidence 5555554 57899999999999975 455432 21111 00 011111110
Q ss_pred CCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---C---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---D---PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 323 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
....+...|.+.|++++|...|++++.. + ...+..+..++...|+.++|...++.+....|++..
T Consensus 149 ------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 ------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1234677888999999999998875433 3 356888889999999999999999999988887643
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=1.8e-06 Score=81.78 Aligned_cols=158 Identities=12% Similarity=-0.006 Sum_probs=120.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-----C----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhhHH
Q 048830 230 ALVDMYAKCGNLDSAFCVFSRMRKR-----D----VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH-PD----SITFL 295 (551)
Q Consensus 230 ~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 295 (551)
..+..+...|++++|.+.+++..+. + ...+..+...+...|++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788889999999999886541 1 113334666777788999999999999874322 22 23688
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcC----CCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---------CHHHH
Q 048830 296 GLLCGCSHQGLVEEGVEYFHMMVSRYN----LKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---------DPVLW 361 (551)
Q Consensus 296 ~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 361 (551)
.+...|...|++++|..+|+++.+... ..+ ...++..+...|.+.|++++|.+.+++++.. -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888999999999999999999875321 122 2357888999999999999999999876643 26788
Q ss_pred HHHHHHHHhcCc-HHHHHHHHHHHHhh
Q 048830 362 RTLLGSCKIHRN-VEIGEIAMKNLVQL 387 (551)
Q Consensus 362 ~~ll~~~~~~g~-~~~a~~~~~~~~~~ 387 (551)
..+..++...|+ +++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 899999999994 69999999998875
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=1.5e-07 Score=80.35 Aligned_cols=124 Identities=9% Similarity=-0.040 Sum_probs=86.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHh
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKI 370 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~ 370 (551)
+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|.+.+++++. .+...|..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444445555556666666666555432 112345555666666666666666666655332 267788888888999
Q ss_pred cCcHHHHHHHHHHHHhhcCCCcchHHHHHHH--hhhcCChhHHHHHHHHHH
Q 048830 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATI--YACTKDEEGVARTRKLIK 419 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 419 (551)
.|++++|...++++++..|.++..+..+..+ +...|++++|.+.++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999988887554444 888899999999987664
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=2.3e-06 Score=76.50 Aligned_cols=146 Identities=8% Similarity=-0.044 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCC
Q 048830 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306 (551)
Q Consensus 227 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 306 (551)
.+..+...|...|++++|.+.|++...++..+|..+...|...|++++|+..|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345667788899999999999999988888899999999999999999999999988863 3456778888889999999
Q ss_pred HHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048830 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385 (551)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 385 (551)
+++|...|+...+. .|+..... +...|. . ... ....|..+..++...|++++|...+++++
T Consensus 87 ~~~A~~~~~~al~~---~~~~~~~~-----~~~~~~---------~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ---LRGNQLID-----YKILGL---------Q-FKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHHT---TTTCSEEE-----CGGGTB---------C-CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCccHHH-----HHHhcc---------c-cCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999988764 23211000 001110 1 111 56788889999999999999999999999
Q ss_pred hhcCCC
Q 048830 386 QLEAAS 391 (551)
Q Consensus 386 ~~~p~~ 391 (551)
++.|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 999875
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=2.8e-06 Score=86.59 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=65.8
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC-hHHHHHHHHHHH
Q 048830 38 LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA-LNKCQELHGFVI 116 (551)
Q Consensus 38 ~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~-~~~a~~~~~~~~ 116 (551)
++.|+.+|+... ..+-. |+++.+..+|++.+.. . |+...|..-+....+.++ .+....+|+..+
T Consensus 11 i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~-ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 11 LSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--S-YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp -CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--C-CCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred hHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--C-CCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 666666666542 22222 8899999999998874 2 888888887777666553 455677888777
Q ss_pred Hh-CC-CCChhHHHHHHHHHHh----CCCHHHHHHHhccCCC
Q 048830 117 RS-GY-ERCVVVSTNLMRGYAA----NGVIEAARSVFDNMPE 152 (551)
Q Consensus 117 ~~-g~-~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~ 152 (551)
.. |. ..+..+|...+..+.. .++++.+.++|++...
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 64 43 3356777777766542 3567888888887754
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=1.1e-07 Score=79.39 Aligned_cols=99 Identities=12% Similarity=-0.054 Sum_probs=82.9
Q ss_pred CCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 323 LKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 323 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
+.| +...+..+...+.+.|++++|...|++++. .+...|..+..++...|++++|...++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 344 345556677778888888888888877443 3888899999999999999999999999999999999999999
Q ss_pred HHHhhhcCChhHHHHHHHHHHhC
Q 048830 399 ATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.+|...|++++|.+.+++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999888653
No 128
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.63 E-value=2.6e-07 Score=72.87 Aligned_cols=98 Identities=9% Similarity=-0.001 Sum_probs=86.8
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC--CcchHHHHHH
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA--SAGDYVLLAT 400 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 400 (551)
+...+..+...+...|++++|...+++++.. +...|..+...+...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4667788888899999999999988875433 7888999999999999999999999999999999 9999999999
Q ss_pred Hhhhc-CChhHHHHHHHHHHhCCC
Q 048830 401 IYACT-KDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 401 ~~~~~-g~~~~a~~~~~~m~~~g~ 423 (551)
+|... |++++|.+.++.......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999876543
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=2.1e-07 Score=74.98 Aligned_cols=113 Identities=15% Similarity=0.187 Sum_probs=74.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS---PSDPVLWRTLLGSC 368 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~ 368 (551)
..+..+...+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|..++++++ |.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34444455555555555555555555432 11234445555566666666666666655532 22667778888888
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 406 (551)
...|++++|...++++++..|.++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999999888888888776654
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=1.9e-07 Score=76.40 Aligned_cols=113 Identities=8% Similarity=0.045 Sum_probs=72.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGS 367 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~ 367 (551)
..+..+...+...|++++|...|+...+ ..| +...+..+..+|...|++++|.+.+++++. .+...|..+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3344444455555555555555555432 222 344455555555555555555555554332 266777788888
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
+...|++++|...++++++.+|.++..+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888889999999999898888888888888877664
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.62 E-value=1.5e-07 Score=76.59 Aligned_cols=115 Identities=7% Similarity=-0.054 Sum_probs=81.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSC 368 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~ 368 (551)
..+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|.+.+++++. .+...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34445555555566666666666655542 112445555666666666666666666655332 2677788888888
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCCh
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 408 (551)
...|++++|...++++++..|.++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999888875
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.61 E-value=1.2e-07 Score=91.89 Aligned_cols=142 Identities=11% Similarity=-0.017 Sum_probs=102.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhh
Q 048830 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 334 (551)
+...|..+...|.+.|++++|+..|++..... |+...+ ..+.+...-. .....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQA---------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHH---------HHHHHHHHHH
Confidence 34566667777777777777777777776642 322100 0011111000 0134567777
Q ss_pred HHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHH
Q 048830 335 DLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411 (551)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 411 (551)
.+|.+.|++++|+..+++++.. +...|..+..++...|++++|...|+++++++|+++.++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888775543 7888999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHH
Q 048830 412 A-RTRKLI 418 (551)
Q Consensus 412 ~-~~~~~m 418 (551)
. ..++.|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 4 455555
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=1.3e-06 Score=82.79 Aligned_cols=160 Identities=12% Similarity=-0.035 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCH------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--Hhh
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRK---RDV------LSWNSMIVGYGVHGRGDEAISFFKQMLMAGF---HPD--SIT 293 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t 293 (551)
+...+..|...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++...... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455666777777777777664431 111 2233345556677777888877777765321 111 236
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---------CHH
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-----IKHYGCLVDLYGRAGKLEKALEVINTSSPS---------DPV 359 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~ 359 (551)
++.+...|...|++++|..+|+++.+.....|+ ..++..+...|.+.|++++|.+.+++++.. -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 677777777788888888887777632222222 246777777788888888888877765543 156
Q ss_pred HHHHHHHHHHhcCcHHHH-HHHHHHHHhh
Q 048830 360 LWRTLLGSCKIHRNVEIG-EIAMKNLVQL 387 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 387 (551)
+|..+...+...|+.++| ...+++++.+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 777788888888888888 7777777654
No 134
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.59 E-value=4e-05 Score=72.32 Aligned_cols=216 Identities=6% Similarity=-0.051 Sum_probs=140.8
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH----HhC
Q 048830 64 AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK--ALNKCQELHGFVIRSGYERCVVVSTNLMRGY----AAN 137 (551)
Q Consensus 64 ~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~ 137 (551)
......++|+++++.++..++ -+...|+.--.++...+ ++++++..++.++... +.+..+|+.--.++ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 333444688888888888763 24445666666666777 8888888888888764 45566666555555 445
Q ss_pred ---CCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC----
Q 048830 138 ---GVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHL--EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA---- 205 (551)
Q Consensus 138 ---g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---- 205 (551)
+++++++.+++++.+ ++..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...++.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 677888888877764 56677777777777777777 8888888887654 2344455544444555554
Q ss_pred --hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHHhcCC------CCHhHHHHHHHHHHhcCChHHHH
Q 048830 206 --LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS-AFCVFSRMRK------RDVLSWNSMIVGYGVHGRGDEAI 276 (551)
Q Consensus 206 --~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~ 276 (551)
++++.+.+..+++.. +-|...|+-+...+.+.|+... +..+..++.+ +++.++..+...|.+.|+.++|+
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 667777777777665 3466777777777777666333 4444444332 24556666666666667777777
Q ss_pred HHHHHHHH
Q 048830 277 SFFKQMLM 284 (551)
Q Consensus 277 ~~~~~m~~ 284 (551)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776654
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=1.1e-07 Score=82.66 Aligned_cols=119 Identities=9% Similarity=0.045 Sum_probs=88.8
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHH-HHhcCcH--H
Q 048830 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGS-CKIHRNV--E 375 (551)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~-~~~~g~~--~ 375 (551)
...|++++|...++...+. .+.+...+..+...|...|++++|...|++++.. +...|..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456677777777766543 1224566777777777778888887777764433 77778888888 7788888 9
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 376 IGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 376 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
+|...++++++.+|.++..+..++.+|...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999998887643
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=1.7e-06 Score=76.61 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMA----GFHP--DSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
++..+...|...|++++|...+++.... +-.| ....+..+...+...|++++|...+++..
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444445555555555555555544431 1011 11234444455555555555555555543
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.54 E-value=2.1e-07 Score=75.70 Aligned_cols=94 Identities=9% Similarity=-0.009 Sum_probs=78.0
Q ss_pred cchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh
Q 048830 328 KHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404 (551)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 404 (551)
..+..+...+.+.|++++|.+.|++++.. +...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555667777788888888887765433 788888889999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhC
Q 048830 405 TKDEEGVARTRKLIKSN 421 (551)
Q Consensus 405 ~g~~~~a~~~~~~m~~~ 421 (551)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999999887653
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=6.4e-07 Score=79.35 Aligned_cols=116 Identities=13% Similarity=-0.020 Sum_probs=67.5
Q ss_pred hcCCHHHHHH---HHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHhccCCHH
Q 048830 237 KCGNLDSAFC---VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA----GFHP-DSITFLGLLCGCSHQGLVE 308 (551)
Q Consensus 237 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~ 308 (551)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777777 444433334566777777777778888888777776651 1122 2345666777777788888
Q ss_pred HHHHHHHHhHHhcCCCC-C----ccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 309 EGVEYFHMMVSRYNLKP-G----IKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
+|...+++..+...-.+ + ...+..+...+...|++++|...+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88887777655321111 1 23344555555555666555555555
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.52 E-value=2.1e-07 Score=75.25 Aligned_cols=94 Identities=11% Similarity=-0.005 Sum_probs=83.4
Q ss_pred cchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh
Q 048830 328 KHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404 (551)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 404 (551)
..+..+...+.+.|++++|...|++++.. +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556677888999999999999885543 889999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhC
Q 048830 405 TKDEEGVARTRKLIKSN 421 (551)
Q Consensus 405 ~g~~~~a~~~~~~m~~~ 421 (551)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988764
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=6.1e-07 Score=73.93 Aligned_cols=96 Identities=8% Similarity=-0.062 Sum_probs=79.6
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 402 (551)
+...+..+...+...|++++|...|++++.. +...|..+...+...|++++|...++++++++|.++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556667777777777777777777764433 7788888888999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 048830 403 ACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~ 421 (551)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999887653
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.47 E-value=3.8e-07 Score=78.10 Aligned_cols=92 Identities=8% Similarity=-0.006 Sum_probs=48.9
Q ss_pred chhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhc
Q 048830 329 HYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 405 (551)
.+..+...|.+.|++++|++.|++++.. +...|..+..++...|++++|+..++++++++|+++..|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3344444444555555555544443322 4555555555555555555555555555555555555555555555555
Q ss_pred CChhHHHHHHHHHHh
Q 048830 406 KDEEGVARTRKLIKS 420 (551)
Q Consensus 406 g~~~~a~~~~~~m~~ 420 (551)
|++++|...+++..+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555555543
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=3.5e-07 Score=74.65 Aligned_cols=92 Identities=8% Similarity=-0.080 Sum_probs=72.4
Q ss_pred chhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc-------hHHHH
Q 048830 329 HYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG-------DYVLL 398 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 398 (551)
.+..+...+.+.|++++|++.|++++.. +...|..+..+|...|++++|+..++++++++|+++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3455677777778888888777765533 7888888888888888999999999998888876643 56778
Q ss_pred HHHhhhcCChhHHHHHHHHHHh
Q 048830 399 ATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+.+|...|++++|.+.+++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888999999998887654
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.46 E-value=3.2e-07 Score=77.18 Aligned_cols=102 Identities=11% Similarity=0.027 Sum_probs=75.1
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcC---CCCHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSS---PSDPVLWRTLLGS 367 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~ 367 (551)
..+..+...+...|++++|...|+.+... .| +...|..+..+|...|++++|.+.|++++ |.++..|..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 44555666666777777777777776542 34 55666677777777777777777777644 3377888888999
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
+...|++++|...|++++++.|+++....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999999999998876543
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=3.4e-06 Score=77.96 Aligned_cols=132 Identities=7% Similarity=-0.102 Sum_probs=75.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--ccchhhhhHHHhh
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG--IKHYGCLVDLYGR 339 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 339 (551)
+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 444555566666666666555543 243333334444556666666666666544221 0 111 2245556666666
Q ss_pred cCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 340 AGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 340 ~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
.|++++|+..|+++... ....+..+..++...|+.++|...|+++...+|+ +..+..|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 66666666666663321 2235556667777778888888888888888777 5555444
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.44 E-value=7.2e-07 Score=77.36 Aligned_cols=125 Identities=10% Similarity=0.081 Sum_probs=91.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHH-HhhcCCH-
Q 048830 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDL-YGRAGKL- 343 (551)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~~- 343 (551)
...|++++|+..+++..... +.+...+..+...|...|++++|...|+.+.+. .| +...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 34567777777777776653 334567777777788888888888888877653 23 45666777777 6778887
Q ss_pred -HHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 344 -EKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 344 -~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
++|...+++++. .+...|..+...+...|++++|...++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 888888877443 3788888899999999999999999999999999876544
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=1.1e-06 Score=71.70 Aligned_cols=96 Identities=11% Similarity=0.006 Sum_probs=88.4
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 402 (551)
+...+..+...+.+.|++++|.+.|++++.. +...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4667788899999999999999999986655 8899999999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 048830 403 ACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~ 421 (551)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988753
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.43 E-value=1.4e-06 Score=69.26 Aligned_cols=106 Identities=10% Similarity=0.016 Sum_probs=57.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHh
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKI 370 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~ 370 (551)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|...+++++. .+...|..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444444455555555555544432 111333444444455555555555555544222 255566666667777
Q ss_pred cCcHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 048830 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 401 (551)
.|++++|...++++++.+|.++..+..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 7777777777777777777766666655544
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.42 E-value=9.3e-07 Score=78.30 Aligned_cols=166 Identities=9% Similarity=-0.077 Sum_probs=99.0
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHH
Q 048830 234 MYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 310 (551)
.....|+++++.+.|+...+ .....|..+...+...|++++|+..|++..... |+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHHH
Confidence 33444555555555543222 134456666677777777777777777777632 221100000 00000
Q ss_pred HHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh
Q 048830 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387 (551)
Q Consensus 311 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 387 (551)
. .. .....+..+..+|.+.|++++|...+++++.. +...|..+..++...|++++|...+++++++
T Consensus 83 ~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 00 01245666777777888888888877764433 7888889999999999999999999999999
Q ss_pred cCCCcchHHHHHHHhhhcCChhHHH-HHHHHHHh
Q 048830 388 EAASAGDYVLLATIYACTKDEEGVA-RTRKLIKS 420 (551)
Q Consensus 388 ~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 420 (551)
+|.++..+..++.++...|+.+++. ..+..|-.
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988888777 45555543
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=2.2e-06 Score=71.33 Aligned_cols=108 Identities=9% Similarity=-0.080 Sum_probs=63.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHH
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLG 366 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~ 366 (551)
+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++++. .+...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 33344444444444444444444432 2232 33444455555555555555555544322 25666777777
Q ss_pred HHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh
Q 048830 367 SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 404 (551)
++...|++++|...++++++++|+++..+..+..+..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 77888888888888888888888887777666665544
No 150
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=3.1e-06 Score=79.63 Aligned_cols=189 Identities=11% Similarity=-0.038 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHH
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGY 266 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 266 (551)
...+..+...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|.+.|++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455556666677777777777777777654 23577788888888999999999999988765 3567888888999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHH
Q 048830 267 GVHGRGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345 (551)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 345 (551)
...|++++|+..|++..+. .|+. ..+...+..... ..++..... .... ...++......+...+ .|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~-~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWNS-IEER-RIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHHH-HHHT-CCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHHH-HHHH-HHhhhHHHHHHHHHHH--HHHHHH
Confidence 9999999999999988764 2322 111112221111 112222222 2221 4444555555554433 689999
Q ss_pred HHHHHhhcCCC---CHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhhc
Q 048830 346 ALEVINTSSPS---DPVLWRTLLGSCKIH-RNVEIGEIAMKNLVQLE 388 (551)
Q Consensus 346 A~~~~~~~~~~---~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~ 388 (551)
|.+.+++++.. +......+...+... +.+++|..+|+++.+..
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999886665 344444444445444 66888888888887643
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=7e-06 Score=75.83 Aligned_cols=182 Identities=10% Similarity=-0.041 Sum_probs=96.9
Q ss_pred cCCChhHHHHHHHHHHHcCCCCCChhhHHHH-------HHHHhccCChHHHHHHHHHHHHhCCCCC--------------
Q 048830 65 QSLSPLQAIFYYNHMLMASLSRPDTFTFTFT-------LKACERVKALNKCQELHGFVIRSGYERC-------------- 123 (551)
Q Consensus 65 ~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~g~~~~-------------- 123 (551)
+.++...|.+.|.+.....+ -....|..+ ..++.+.++..++...+...++ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP--~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE--SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhCh--hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 46777777777777777664 234455555 2333333333333333322222 2221
Q ss_pred --------hhHHHHHHHHHHhCCCHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccC--HH
Q 048830 124 --------VVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD--GF 191 (551)
Q Consensus 124 --------~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~ 191 (551)
....-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 12334456667777888888888877764 433355556667777788888888876443321 111 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 048830 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVES--VYVGNALVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 192 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~ 251 (551)
.+..+..++...|++++|...+++.......|. ......+..++.+.|+.++|..+|+++
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555666666666666666666553221132 223344444455555555555555544
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.40 E-value=1.4e-06 Score=74.60 Aligned_cols=106 Identities=12% Similarity=0.037 Sum_probs=78.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGS 367 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~ 367 (551)
..+..+...+...|++++|...|++.++. .| +...|..+..+|.+.|++++|+..|++++.. +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44555666666666777777776666543 23 4566667777777777777777777664433 78889999999
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 400 (551)
+...|++++|...++++++++|+++..+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999987665543
No 153
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.40 E-value=2.3e-06 Score=71.97 Aligned_cols=96 Identities=7% Similarity=-0.025 Sum_probs=54.4
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 048830 52 QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131 (551)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 131 (551)
+...|..+...+.+.|++++|+..|++.....+ .+...|..+..++...|++++|...|++.++.. +.++..+..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 444555556666666666666666666665553 345555556666666666666666666666553 33444555555
Q ss_pred HHHHhCCCHHHHHHHhccC
Q 048830 132 RGYAANGVIEAARSVFDNM 150 (551)
Q Consensus 132 ~~y~~~g~~~~A~~~~~~m 150 (551)
.+|.+.|++++|...|++.
T Consensus 112 ~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555443
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=4.7e-06 Score=70.87 Aligned_cols=125 Identities=10% Similarity=0.016 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRG 133 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 133 (551)
..|..+...+...|++++|+..|++.....+ .+...+..+...+...|++++|...+...++.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4566666777777777777777777776653 355666677777777777777777777777653 3455566666666
Q ss_pred HHhCCCHHHHHHHhccCCC---CChhHHHHH--HHHHHhcCChHHHHHHHHHh
Q 048830 134 YAANGVIEAARSVFDNMPE---RDLVSWNSI--ISCYTQASFHLEALKLYERM 181 (551)
Q Consensus 134 y~~~g~~~~A~~~~~~m~~---~~~~~~~~l--i~~~~~~g~~~~A~~~~~~m 181 (551)
|.+.|++++|...|++..+ .+...+..+ +..+...|++++|+..+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666665542 233333222 22255556666666665543
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.2e-06 Score=71.05 Aligned_cols=107 Identities=7% Similarity=-0.068 Sum_probs=70.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHH
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSC 368 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~ 368 (551)
.+..+...+...|++++|...|++..+. .| +...|..+..+|.+.|++++|...+++++.. +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444455555556666666666655432 23 3455566666666666666666666554332 677788888888
Q ss_pred HhcCcHHHHHHHHHHHHhhc------CCCcchHHHHHHHh
Q 048830 369 KIHRNVEIGEIAMKNLVQLE------AASAGDYVLLATIY 402 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 402 (551)
...|++++|...++++++++ |.++.....+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88889999999999999888 77776666665554
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=1.3e-06 Score=69.46 Aligned_cols=95 Identities=13% Similarity=0.030 Sum_probs=85.9
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
...+..+...+...|++++|.+.+++++.. +...|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345677888899999999999999885433 88999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 048830 404 CTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~ 421 (551)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999988764
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.37 E-value=1.1e-06 Score=73.23 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=71.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHH
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSC 368 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~ 368 (551)
.+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|...|++++. .++..|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3444555566666666666666666542 33 455566666666677777777776665442 3777788888888
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
...|++++|...+++++++.|+++......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 889999999999999999999887665543
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.36 E-value=5.6e-06 Score=66.27 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRG 133 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 133 (551)
..|..+...+...|++++|+..|+++....+ .+..++..+...+...|++++|...++.+.+.. +.+..++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4455555555555555555555555554432 234444455555555555555555555555442 2333444444444
Q ss_pred HHhCCCHHHHHHHhcc
Q 048830 134 YAANGVIEAARSVFDN 149 (551)
Q Consensus 134 y~~~g~~~~A~~~~~~ 149 (551)
|.+.|++++|...|++
T Consensus 87 ~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHH
Confidence 4444444444444443
No 159
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.30 E-value=1.2e-06 Score=73.15 Aligned_cols=108 Identities=8% Similarity=-0.069 Sum_probs=78.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 371 (551)
..+......+.+.|++++|...|++.++. .|+... . ++. .. -|.+...|..+..++...
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~--~------------~a~---~~-~~~~a~a~~n~g~al~~L 70 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPP--E------------EAF---DH-AGFDAFCHAGLAEALAGL 70 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCT--T------------SCC---CH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcc--h------------hhh---hh-ccchHHHHHHHHHHHHHC
Confidence 34555566667777777777777777643 333100 0 000 00 000344888889999999
Q ss_pred CcHHHHHHHHHHHHhh-------cCCCcchH----HHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 372 RNVEIGEIAMKNLVQL-------EAASAGDY----VLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
|++++|+..+++++++ +|+++..| ...+.++...|++++|...|++..+
T Consensus 71 gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999999 99999999 9999999999999999999998865
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.29 E-value=0.00055 Score=65.36 Aligned_cols=180 Identities=9% Similarity=-0.039 Sum_probs=122.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK-ALNKCQELHGFVIRSGYERCVVVSTNLMRGY 134 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 134 (551)
++.+-......+..++|++++++++..++ -+...|+.--..+...+ .+++++.+++.++... +.+..+|+.-..++
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 44444445556667799999999998874 24455676666666777 5999999999998764 56777888777777
Q ss_pred HhC-C-CHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChH--------HHHHHHHHhhhCCcccCHHHHHHHHHHHH
Q 048830 135 AAN-G-VIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHL--------EALKLYERMRFEDVGLDGFTLVCLLSSCA 201 (551)
Q Consensus 135 ~~~-g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 201 (551)
.+. + +.++++++++++.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...++.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 766 6 78899999988876 45667776665555555555 7888888877653 335555665555555
Q ss_pred hcCC-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048830 202 HVGA-------LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240 (551)
Q Consensus 202 ~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 240 (551)
+.+. ++++.+....+++.. +-|...|+-+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 5554 466666666666654 3356666666655655554
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.28 E-value=9.1e-06 Score=65.64 Aligned_cols=115 Identities=6% Similarity=-0.058 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 048830 53 TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR 132 (551)
Q Consensus 53 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 132 (551)
...|..+...+...|++++|+..|++.....+ .+...+..+...+...|++++|...+....+.. +.+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34455555666666666666666666655543 344555556666666666666666666666543 334445555555
Q ss_pred HHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCC
Q 048830 133 GYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASF 170 (551)
Q Consensus 133 ~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 170 (551)
+|.+.|++++|...|++..+ .+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55555555555555554432 233444444444444443
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=2.8e-06 Score=69.79 Aligned_cols=98 Identities=10% Similarity=-0.064 Sum_probs=64.9
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHH
Q 048830 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLL 365 (551)
Q Consensus 290 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll 365 (551)
+...+..+...+...|++++|...|+...+. .| +...+..+..+|...|++++|...+++++.. +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3445555555666666666666666665542 23 3455666666666666666666666653332 677788888
Q ss_pred HHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 366 GSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 366 ~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
.++...|++++|...+++++++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888888876
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.27 E-value=3.4e-05 Score=73.67 Aligned_cols=230 Identities=13% Similarity=0.012 Sum_probs=117.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH-HHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 048830 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGF-TLVCLLSSCAHVG-ALNMGIFLHRIACEMGFVESVYVGNALVDMY 235 (551)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 235 (551)
++.+-....+.+..++|++++.++... .|+.. .++.--.++...+ .++++..+++.+++... -+..+|+.-..++
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 333333444455556777777777653 34433 3444444444555 36677777766666542 2455555555555
Q ss_pred Hhc-C-CHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 236 AKC-G-NLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGD--------EAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 236 ~~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
.+. + +++++.++++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 444 4 56666666666654 24445554444444333333 4555555555432 223334444333333
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcH-----
Q 048830 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNV----- 374 (551)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~----- 374 (551)
+.+... . ....++++++.+++++. .|...|+-+-..+...|+.
T Consensus 213 ~l~~~~-----------------~------------~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~ 263 (349)
T 3q7a_A 213 SRPGAE-----------------T------------SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPIL 263 (349)
T ss_dssp TSTTCC-----------------C------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred hccccc-----------------c------------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccc
Confidence 333200 0 00014555555544332 2666666655555554432
Q ss_pred ---------------HHHHHHHHHHHhhc------CCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 375 ---------------EIGEIAMKNLVQLE------AASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 375 ---------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.........+.... +.++-+...|+.+|...|+.++|.++++.+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 12222222222221 45666788999999999999999999998853
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.26 E-value=3.6e-06 Score=85.12 Aligned_cols=142 Identities=8% Similarity=-0.026 Sum_probs=97.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 345666666777777777777777776653 1221100 0 000000 000 01356777888
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHH
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 412 (551)
+|.+.|++++|+..+++++.. +...|..+..+|...|++++|...|+++++++|+++.++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888875543 88899999999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHHH
Q 048830 413 R-TRKLIK 419 (551)
Q Consensus 413 ~-~~~~m~ 419 (551)
+ .++.|-
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 5 445553
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=6.3e-06 Score=68.53 Aligned_cols=96 Identities=8% Similarity=-0.025 Sum_probs=87.3
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC--C----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS--D----PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
+...+..+...+...|++++|.+.|++++.. + ...|..+...+...|++++|...++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4567778889999999999999999986665 3 788889999999999999999999999999999999999999
Q ss_pred HHhhhcCChhHHHHHHHHHHhC
Q 048830 400 TIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
.+|...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988763
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=8.1e-06 Score=81.80 Aligned_cols=161 Identities=9% Similarity=-0.140 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHh----hHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-Cccc
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLMA-GFHPDSI----TFLGLLCGCSHQGLVEEGVEYFHMMVSRY---NLKP-GIKH 329 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~ 329 (551)
+..++..|...|++++|.+++.++... +..++.. ..+.+...+...|+.+.|..+++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344555566666666666655554431 1111111 12222223334566666666666554321 1111 1344
Q ss_pred hhhhhHHHhhcCCHHHHHHHHhhcCC-------C--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcC---CC----cc
Q 048830 330 YGCLVDLYGRAGKLEKALEVINTSSP-------S--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA---AS----AG 393 (551)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~ 393 (551)
+..|...|...|++++|..++++.+. . ...++..++..|...|++++|...+++++...+ .. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 55666777777777777766654221 1 345677777788888888888888888776532 22 23
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 394 DYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
.+..++..+...|++++|...+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56677778888888888888776553
No 167
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.22 E-value=8.2e-06 Score=78.87 Aligned_cols=119 Identities=11% Similarity=-0.028 Sum_probs=73.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048830 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-D---------------VLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285 (551)
Q Consensus 224 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (551)
+...+..+...|.+.|++++|...|++..+ | + ..+|..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888999999999999999999998753 2 2 356666666666666666666666666664
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHH
Q 048830 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKA 346 (551)
Q Consensus 286 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 346 (551)
. +.+...+..+..++...|++++|...|+++.+. .| +...+..+..++.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 223455555666666666666666666655432 23 233333444444444444433
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.20 E-value=5.7e-06 Score=66.95 Aligned_cols=45 Identities=2% Similarity=-0.186 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
..+|..+..++...|++++|...++++++..| ++.....+..+..
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 55667777778888888888888888888877 4666555555443
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.20 E-value=1.8e-06 Score=87.87 Aligned_cols=114 Identities=11% Similarity=0.004 Sum_probs=77.9
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHH
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVE 375 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~ 375 (551)
.+.+.|++++|...|++..+. .| +...|..+..+|.+.|++++|.+.+++++.. +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345566666666666666542 33 3556666666777777777777766664433 6777778888888888888
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHH--hhhcCChhHHHHHHH
Q 048830 376 IGEIAMKNLVQLEAASAGDYVLLATI--YACTKDEEGVARTRK 416 (551)
Q Consensus 376 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 416 (551)
+|+..++++++++|+++..+..++.+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888888888888777777 777788888888776
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.20 E-value=5.7e-06 Score=69.71 Aligned_cols=137 Identities=11% Similarity=0.040 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH----hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchh
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH-PDS----ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 331 (551)
.++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|...++...+...-.++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---- 85 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---- 85 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc----
Confidence 34566666666777777777777666542100 111 244445555555555555555555544321000000
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC------CcchHHHHHHHhhhc
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA------SAGDYVLLATIYACT 405 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~ 405 (551)
.. ...++..+...+...|++++|...++++++..+. .+..+..++.+|...
T Consensus 86 ------------~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 86 ------------AV-----------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp ------------HH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------HH-----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 00 1334555666666777777777777777665321 244677888889999
Q ss_pred CChhHHHHHHHHHHh
Q 048830 406 KDEEGVARTRKLIKS 420 (551)
Q Consensus 406 g~~~~a~~~~~~m~~ 420 (551)
|++++|.+.+++..+
T Consensus 143 g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999988887654
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.19 E-value=2e-06 Score=68.79 Aligned_cols=81 Identities=14% Similarity=-0.025 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHH
Q 048830 340 AGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 340 ~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 413 (551)
.|++++|+..|++++.. +...|..+...+...|++++|...++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555666666554432 345666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 048830 414 TRKLIKS 420 (551)
Q Consensus 414 ~~~~m~~ 420 (551)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.18 E-value=7e-06 Score=66.57 Aligned_cols=88 Identities=16% Similarity=0.088 Sum_probs=59.2
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCC---CCH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHHHHHhh
Q 048830 333 LVDLYGRAGKLEKALEVINTSSP---SDP---VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLLATIYA 403 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 403 (551)
+...+...|++++|.+.|++++. .+. ..+..+..++...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 44455556666666666555332 133 456666677777777777777777777777777 566777777777
Q ss_pred hcCChhHHHHHHHHHHh
Q 048830 404 CTKDEEGVARTRKLIKS 420 (551)
Q Consensus 404 ~~g~~~~a~~~~~~m~~ 420 (551)
..|++++|...++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77888877777777655
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.18 E-value=5.4e-06 Score=81.19 Aligned_cols=135 Identities=7% Similarity=-0.048 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhH
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVD 335 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 335 (551)
..|..+...+.+.|++++|+..|++..+. .|+.. ..... +... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHH
Confidence 45666677777777777777777777652 01000 00000 1110 1223 4567888888
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHH
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 412 (551)
+|.+.|++++|++.+++++.. +...|..+..+|...|++++|...++++++++|+++..+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887765 78899999999999999999999999999999999999999999999998888776
Q ss_pred H
Q 048830 413 R 413 (551)
Q Consensus 413 ~ 413 (551)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 5
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=7.8e-06 Score=68.87 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF-HPD---- 290 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 290 (551)
..++..+...|...|++++|.+.|++..+ .+ ..++..+...+...|++++|...+++...... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45778889999999999999999988753 22 24788889999999999999999999876311 111
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 291 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
...+..+...+...|++++|...+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566667777788888888888777654
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.17 E-value=4.5e-06 Score=71.09 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 55788888999999999999999999999999999999999999999999999999999888663
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=3.7e-06 Score=68.13 Aligned_cols=93 Identities=6% Similarity=-0.027 Sum_probs=75.6
Q ss_pred chhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC-------cchHHHH
Q 048830 329 HYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS-------AGDYVLL 398 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l 398 (551)
.+..+...+...|++++|...|++++.. +...+..+...+...|++++|...++++++..|.+ +.++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4555666677777777777777664332 67788888888888999999999999999988776 7789999
Q ss_pred HHHhhhcCChhHHHHHHHHHHhC
Q 048830 399 ATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.+|...|++++|.+.++++.+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999988763
No 177
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.14 E-value=9.9e-06 Score=65.83 Aligned_cols=106 Identities=5% Similarity=-0.051 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhH
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVD 335 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 335 (551)
.++..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|+..++..++. .|+ ...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~-- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH--
Confidence 455666666677777777777777666642 223455666666666666666666666666532 221 1111111
Q ss_pred HHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
..+|..+..++...|++++|+..|+++++..|+
T Consensus 83 ----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 ----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 234555667777788888888888888877664
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=8e-06 Score=83.00 Aligned_cols=117 Identities=10% Similarity=0.066 Sum_probs=76.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCH
Q 048830 231 LVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307 (551)
Q Consensus 231 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 307 (551)
+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..+++..+.. +-+...+..+..+|...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34456677888888888876642 356777777788888888888888888777752 22456677777777778888
Q ss_pred HHHHHHHHHhHHhcCCCC-CccchhhhhHH--HhhcCCHHHHHHHHh
Q 048830 308 EEGVEYFHMMVSRYNLKP-GIKHYGCLVDL--YGRAGKLEKALEVIN 351 (551)
Q Consensus 308 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 351 (551)
++|...|+++.+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888777653 33 33444444444 666777777777776
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=4.9e-05 Score=76.02 Aligned_cols=191 Identities=9% Similarity=-0.084 Sum_probs=116.4
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCcccC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCc
Q 048830 162 ISCYTQASFHLEALKLYERMRFEDVGLD----------------GFTLVCLLSSCAHVGALNMGIFLHRIACEMG-FVES 224 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~ 224 (551)
...+.+.|++++|++.|.+..+...... ...+..+...|...|++++|.+.+..+.+.- -.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567788999999999988876543221 1235667777788888888888777766531 1111
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--
Q 048830 225 V----YVGNALVDMYAKCGNLDSAFCVFSRMRK--------R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMA--GF-- 287 (551)
Q Consensus 225 ~----~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 287 (551)
. .+.+.+...+...|+.+.|..++..... + -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2334444455566777777777765431 1 1345666777777777777777777776542 11
Q ss_pred CCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----ccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 288 HPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-----IKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 288 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
.|. ..++..++..|...|++++|..+++.......-.++ ...+..++..+...|++++|...|.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 111 235666667777777777777777766543211111 23455556666667777777776666
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.11 E-value=3.5e-06 Score=74.56 Aligned_cols=146 Identities=12% Similarity=0.005 Sum_probs=75.1
Q ss_pred HHHHHHHcCCCCChHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC-------------
Q 048830 25 WLLNSYAISVSSSLSYAQLLFNQIQN---PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD------------- 88 (551)
Q Consensus 25 ~li~~~~~~~~g~~~~A~~lf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd------------- 88 (551)
..+...... |+++.|.+.|+.... .....|..+...+...|++++|+..|++........|+
T Consensus 9 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 9 HHSSGRENL--YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred chhhhhhhh--hhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 344444555 777777777764332 24556778888899999999999999999876532121
Q ss_pred -hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHH
Q 048830 89 -TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISC 164 (551)
Q Consensus 89 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 164 (551)
...+..+..++...|++++|...+...++.. +.+...+..+..+|...|++++|...|++..+ .+...+..+...
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 1344455555555556666655555555542 33444444555555555555555555544321 233344444444
Q ss_pred HHhcCChHH
Q 048830 165 YTQASFHLE 173 (551)
Q Consensus 165 ~~~~g~~~~ 173 (551)
+...++..+
T Consensus 166 ~~~~~~~~~ 174 (198)
T 2fbn_A 166 VNKLKEARK 174 (198)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 444433333
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.00039 Score=66.06 Aligned_cols=92 Identities=9% Similarity=0.092 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCC-hHHHHHHH
Q 048830 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG--NLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGR-GDEAISFF 279 (551)
Q Consensus 206 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 279 (551)
++++..+++.++... +-+..+|+.-..++.+.| .++++.++++.+.+ +|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555543 234555555555555555 35666666666553 455666665555566666 46677777
Q ss_pred HHHHHcCCCCCHhhHHHHHH
Q 048830 280 KQMLMAGFHPDSITFLGLLC 299 (551)
Q Consensus 280 ~~m~~~g~~p~~~t~~~ll~ 299 (551)
+++.+.. +-|...|+....
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ 187 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHH
Confidence 7666653 224444444333
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.00034 Score=66.41 Aligned_cols=177 Identities=10% Similarity=0.043 Sum_probs=132.7
Q ss_pred HHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCC-HHHHHHHH
Q 048830 241 LDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGR--GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL-VEEGVEYF 314 (551)
Q Consensus 241 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~ 314 (551)
++++..+++.+.. .+..+|+.-...+...|+ +++++.+++++.+.. +-|...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777653 577889888888888884 899999999999864 3466777776667777787 68999999
Q ss_pred HHhHHhcCCCC-CccchhhhhHHHhhc--------------CCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc-----
Q 048830 315 HMMVSRYNLKP-GIKHYGCLVDLYGRA--------------GKLEKALEVINTSSPS---DPVLWRTLLGSCKIH----- 371 (551)
Q Consensus 315 ~~~~~~~~~~p-~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~----- 371 (551)
+.+++. .| |...|+....++.+. +.++++++.+++++.. |...|+-+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 999864 34 666676666665554 4588899888876643 999998776666555
Q ss_pred ------CcHHHHHHHHHHHHhhcCCCcchHHHHHHH---hhhcCChhHHHHHHHHHHhC
Q 048830 372 ------RNVEIGEIAMKNLVQLEAASAGDYVLLATI---YACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 372 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.++++++.++++++++|++.-.+..++.. ....|..+++...+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 468999999999999999986555444332 23467788888899888763
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.10 E-value=6.2e-06 Score=66.42 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=65.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHH
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCK 369 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~ 369 (551)
+..+...+.+.|++++|...|+..++. .| +...|..+..++...|++++|+..|++++.. +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444555666777777777777777643 34 5666677777777777777777777764433 7778888888888
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCc
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
..|++++|...++++++++|.++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888754
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.10 E-value=2.1e-06 Score=83.08 Aligned_cols=146 Identities=7% Similarity=-0.106 Sum_probs=81.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777778888889999999999888764 454432 233444444433221 125777888
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh-hhcCChhHH
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY-ACTKDEEGV 411 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 411 (551)
+|.+.|++++|+..+++++.. +...|..+..+|...|++++|...|+++++++|+++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999888875543 7888888999999999999999999999999999888888888774 445667777
Q ss_pred HHHHHHHHhC
Q 048830 412 ARTRKLIKSN 421 (551)
Q Consensus 412 ~~~~~~m~~~ 421 (551)
.++++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7788777543
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=0.0001 Score=76.28 Aligned_cols=166 Identities=8% Similarity=-0.032 Sum_probs=126.7
Q ss_pred HHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC--
Q 048830 241 LDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGR----------GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG-- 305 (551)
Q Consensus 241 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-- 305 (551)
-++|.+.++++.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3456666666553 345566665555555555 788888888888753 224566777677777778
Q ss_pred CHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcC-CHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc---------
Q 048830 306 LVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAG-KLEKALEVINTSSPS---DPVLWRTLLGSCKIH--------- 371 (551)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~--------- 371 (551)
+++++...++++.+. .| +...|+.-..++.+.| .++++.+.+++++.. |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 668888888888763 34 6677777777777888 889999999887766 888999888776653
Q ss_pred -----CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhH
Q 048830 372 -----RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410 (551)
Q Consensus 372 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 410 (551)
+.++++.+.+++++..+|++..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999998665
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.07 E-value=2e-05 Score=63.76 Aligned_cols=100 Identities=10% Similarity=0.011 Sum_probs=61.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-c---cchhhhhHHHhhcCCHHHHHHHHhhcCC---CC---HHHHHHHHH
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-I---KHYGCLVDLYGRAGKLEKALEVINTSSP---SD---PVLWRTLLG 366 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~---~~~~~~ll~ 366 (551)
+...+...|++++|...|+.+.+. .|+ . ..+..+..+|.+.|++++|...|++++. .+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 334445555555555555555443 121 1 2445555566666666666666655332 23 556777778
Q ss_pred HHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 367 SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
++...|++++|...++++++..|+++.......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 888888899999999999988888766554443
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.07 E-value=2.1e-06 Score=68.75 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHH
Q 048830 304 QGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEI 379 (551)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~ 379 (551)
.|++++|+..|++.++...-.| +...+..+..+|...|++++|.+.|++++. .+..++..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4566666666666653200023 355666777777777777777777766443 277888888888999999999999
Q ss_pred HHHHHHhhcCCCcchHH
Q 048830 380 AMKNLVQLEAASAGDYV 396 (551)
Q Consensus 380 ~~~~~~~~~p~~~~~~~ 396 (551)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999998876544
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.04 E-value=7e-06 Score=69.90 Aligned_cols=75 Identities=16% Similarity=0.074 Sum_probs=60.7
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc-chHHHHHHH
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA-GDYVLLATI 401 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 401 (551)
...|..+..+|.+.|++++|+..+++++.. +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456777888888888888888888775543 888899999999999999999999999999999987 444444443
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.02 E-value=1.3e-05 Score=77.61 Aligned_cols=148 Identities=10% Similarity=0.032 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
...+..+...|.+.|++++|...|++..+ |+.. .+...|+.+++...+. ...+..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45677888999999999999999998653 3222 1223334444433221 136677888888
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHH-HHhcCcHHHH
Q 048830 303 HQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGS-CKIHRNVEIG 377 (551)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~-~~~~g~~~~a 377 (551)
+.|++++|...++..++. .| +...|..+..+|...|++++|...|++++.. +...+..|... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999998888753 44 5778888888999999999999999886655 56666666655 3456778888
Q ss_pred HHHHHHHHhhcCCCc
Q 048830 378 EIAMKNLVQLEAASA 392 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~ 392 (551)
...|+++++..|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 899999999888765
No 190
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.01 E-value=4.9e-05 Score=59.31 Aligned_cols=62 Identities=8% Similarity=0.022 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (551)
..|..+...+...|++++|+..|++.....+ .+...+..+..++...|++++|...+++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444444555555555555555444432 2333444444444444444444444444444
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.00 E-value=3e-05 Score=78.42 Aligned_cols=121 Identities=7% Similarity=-0.078 Sum_probs=87.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcC--CCC----CccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----------CHHHHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYN--LKP----GIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----------DPVLWRT 363 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ 363 (551)
+...|++++|..++++.++... +-| ...+++.|..+|...|++++|+.++++++.. ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777766654321 112 2456677777777777777777777664422 4566788
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHh-----hcCCCcc---hHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 364 LLGSCKIHRNVEIGEIAMKNLVQ-----LEAASAG---DYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 364 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
|...|...|++++|+.+++++++ ++|+.|. ....|..++...|++++|..++.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999888886 3566654 4568888999999999999999999864
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.94 E-value=4.9e-05 Score=74.35 Aligned_cols=112 Identities=6% Similarity=-0.060 Sum_probs=82.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g 372 (551)
.+..+...+.+.|++++|...|++.++.. |.. ......+++.+.- +.+..+|..+..+|...|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~~~----~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAKLQ----PVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGGGH----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHHHH----HHHHHHHHHHHHHHHhcc
Confidence 45666666777777777777777665421 000 0000111111110 116788999999999999
Q ss_pred cHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 288 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988763
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=1.6e-05 Score=66.40 Aligned_cols=111 Identities=14% Similarity=0.015 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------H-----hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD--------S-----ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (551)
..+......+...|++++|+..|++..+. .|+ . ..|..+..++.+.|++++|+..++..++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 45667778899999999999999999985 444 1 25666666677777777777766655431
Q ss_pred CCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHH----HHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLW----RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 324 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
|++..+. +...| .....++...|++++|+..|+++++++|++...+.
T Consensus 87 --------------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 87 --------------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp --------------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred --------------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 2222222 66677 88899999999999999999999999999876554
Q ss_pred HH
Q 048830 397 LL 398 (551)
Q Consensus 397 ~l 398 (551)
-+
T Consensus 141 ~~ 142 (159)
T 2hr2_A 141 GK 142 (159)
T ss_dssp TH
T ss_pred HH
Confidence 33
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=6.7e-06 Score=64.60 Aligned_cols=90 Identities=6% Similarity=-0.088 Sum_probs=70.9
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC------cchHHH
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS------AGDYVL 397 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 397 (551)
...+..+...+.+.|++++|.+.|++++.. +...|..+..++...|++++|...++++++++|++ +..+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345566777777788888888777764433 78888899999999999999999999999999998 777888
Q ss_pred HHHHhhhcCChhHHHHHHH
Q 048830 398 LATIYACTKDEEGVARTRK 416 (551)
Q Consensus 398 l~~~~~~~g~~~~a~~~~~ 416 (551)
++.++...|++++|...++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 8888888887776655443
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.91 E-value=4.8e-05 Score=58.66 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
++..|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999999999999999999999999999999998765
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.91 E-value=2.3e-05 Score=62.14 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=63.9
Q ss_pred HHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 346 ALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 346 A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
|.+.|++++. .+...|..+...+...|++++|+..++++++++|.++..|..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444333 38888999999999999999999999999999999999999999999999999999999988765
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.91 E-value=1.9e-05 Score=59.33 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=61.0
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
...+..+...+...|++++|...+++++.. +...|..+...+...|++++|...++++++++|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556666677777777777777664332 67778888888888899999999999999999998888888888876
Q ss_pred hcC
Q 048830 404 CTK 406 (551)
Q Consensus 404 ~~g 406 (551)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.79 E-value=5.9e-05 Score=76.18 Aligned_cols=65 Identities=8% Similarity=-0.065 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...|+++.+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999999999999999999999999999999987743
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.78 E-value=9.8e-06 Score=67.49 Aligned_cols=84 Identities=7% Similarity=-0.019 Sum_probs=64.6
Q ss_pred hhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHhhcCCCcchHHHHHHHhhh
Q 048830 338 GRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRN----------VEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 404 (551)
.+.+.+++|.+.+++++.. +...|..+..++...++ +++|+..|+++++++|+++.+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3445566666665553322 66666666666666554 5699999999999999999999999999998
Q ss_pred cC-----------ChhHHHHHHHHHHhC
Q 048830 405 TK-----------DEEGVARTRKLIKSN 421 (551)
Q Consensus 405 ~g-----------~~~~a~~~~~~m~~~ 421 (551)
.| ++++|.+.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999998774
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=0.00023 Score=58.56 Aligned_cols=110 Identities=11% Similarity=0.031 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----cCcHHHHHHH
Q 048830 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKI----HRNVEIGEIA 380 (551)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~ 380 (551)
++++|..+|++..+. + .|+. . |..+|...+.+++|.++|+++... ++..+..|...|.. .+|.++|...
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 445555555555443 2 1211 1 555555555555566666554444 56666666666655 5666667776
Q ss_pred HHHHHhhcCCCcchHHHHHHHhhh----cCChhHHHHHHHHHHhCCC
Q 048830 381 MKNLVQLEAASAGDYVLLATIYAC----TKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 381 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 423 (551)
++++.+. .++..+..|+.+|.. .++.++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 6666655 356667777777777 6777777777777666553
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.66 E-value=0.00024 Score=53.74 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 356 SDPVLWRTLLGSCKIHRN---VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 356 ~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
.|+..+..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 377888888888765555 79999999999999999999999999999999999999999999987654
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.59 E-value=0.00072 Score=68.32 Aligned_cols=85 Identities=6% Similarity=-0.067 Sum_probs=41.1
Q ss_pred HHcCCChhHHHHHHHHHHHc-----CCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHHh-----CC-CC-ChhHHHH
Q 048830 63 FAQSLSPLQAIFYYNHMLMA-----SLSRPDT-FTFTFTLKACERVKALNKCQELHGFVIRS-----GY-ER-CVVVSTN 129 (551)
Q Consensus 63 ~~~~g~~~~A~~l~~~m~~~-----~~~~pd~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~-~~~~~~~ 129 (551)
+..+|++++|+.++++.+.. |..+|+. .+++.|..+|...|++++|..++++.++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566666666666665432 2111222 24555566666666666666665555432 10 01 1223444
Q ss_pred HHHHHHhCCCHHHHHHHh
Q 048830 130 LMRGYAANGVIEAARSVF 147 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~ 147 (551)
|...|...|++++|+.++
T Consensus 399 La~~~~~~G~~~eA~~~~ 416 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMI 416 (490)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 444444445444444444
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.57 E-value=0.00021 Score=71.08 Aligned_cols=114 Identities=10% Similarity=-0.011 Sum_probs=83.8
Q ss_pred HHHhhcCCHHHHHHHHhhcCCC-----------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh-----cCCCc---chH
Q 048830 335 DLYGRAGKLEKALEVINTSSPS-----------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL-----EAASA---GDY 395 (551)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~ 395 (551)
.-+.+.|++++|++++++++.. ...+++.|+.+|...|++++|+.+++++++. +|++| ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345667777777777654432 3566788888888889999999888888863 45554 468
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 048830 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAK 466 (551)
Q Consensus 396 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 466 (551)
..|+.+|...|++++|..++++..+--.. .-...||...++...+.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999887641110 113468999999888888777765
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00011 Score=57.36 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=67.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC------hh
Q 048830 52 QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC------VV 125 (551)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~------~~ 125 (551)
+...|..+...+...|++++|+..|++.....+ .+...+..+..++...|++++|...++..++.. +.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHH
Confidence 345677777788888888888888888877664 356677777778888888888888888877643 222 44
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhccCC
Q 048830 126 VSTNLMRGYAANGVIEAARSVFDNMP 151 (551)
Q Consensus 126 ~~~~li~~y~~~g~~~~A~~~~~~m~ 151 (551)
.+..+..++...|+.+.|...|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 55556666666677666666666554
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.51 E-value=0.0011 Score=54.40 Aligned_cols=110 Identities=14% Similarity=0.004 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh----cCCHHH
Q 048830 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR----AGKLEK 345 (551)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 345 (551)
+++++|+..|++..+.| .|+.. |...|...+.+++|..+|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 44444 666777778888899999988764 356677788888887 889999
Q ss_pred HHHHHhhcCCC-CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhc
Q 048830 346 ALEVINTSSPS-DPVLWRTLLGSCKI----HRNVEIGEIAMKNLVQLE 388 (551)
Q Consensus 346 A~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 388 (551)
|.++|+++... ++..+..|...|.. .+|.++|...++++.+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999997766 88889999999988 899999999999998875
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.48 E-value=6.2e-05 Score=62.66 Aligned_cols=51 Identities=6% Similarity=0.051 Sum_probs=38.5
Q ss_pred HHHHHHHHhhcCCC---CHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHhhcCCCcc
Q 048830 343 LEKALEVINTSSPS---DPVLWRTLLGSCKIH-----------RNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 343 ~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
+++|+..|++++.. +...|..+..+|... |++++|+..|+++++++|+++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 34666666665543 667777777777765 4899999999999999999753
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.40 E-value=0.00054 Score=51.04 Aligned_cols=65 Identities=11% Similarity=0.074 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45678888899999999999999999999999999999999999999999999999999988763
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.34 E-value=0.00038 Score=54.89 Aligned_cols=65 Identities=12% Similarity=0.060 Sum_probs=41.9
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
+...+..+...|...|++++|...|++++.. +...|..+..++...|++++|...+++++++.|.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3455555666666666666666666553322 5666777777777777777777777777776654
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.31 E-value=0.014 Score=60.26 Aligned_cols=172 Identities=8% Similarity=-0.074 Sum_probs=118.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC----------hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 048830 67 LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA----------LNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136 (551)
Q Consensus 67 g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 136 (551)
...++|++.++++....+ -+...|+.--.++...++ ++++...++.+++.. +.+..+|+.-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334577888888888774 244456555555555555 788888888888764 5677788888888888
Q ss_pred CC--CHHHHHHHhccCCC---CChhHHHHHHHHHHhcC-ChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhc-------
Q 048830 137 NG--VIEAARSVFDNMPE---RDLVSWNSIISCYTQAS-FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV------- 203 (551)
Q Consensus 137 ~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------- 203 (551)
.| +++++.+.++++.+ +|..+|+.-...+.+.| .++++++.+.++.+.. .-|...|.....++...
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 88 66888888888765 56778888777777778 7888888888887654 33555565555555442
Q ss_pred -------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 048830 204 -------GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243 (551)
Q Consensus 204 -------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 243 (551)
+.++++.+.+..+++.. +-+...|+-+...+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 44677777777777654 3356677777666666665433
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.24 E-value=0.00054 Score=68.06 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHhhcCCC-----------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh-----cCCCc---chHHHHHH
Q 048830 340 AGKLEKALEVINTSSPS-----------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL-----EAASA---GDYVLLAT 400 (551)
Q Consensus 340 ~g~~~~A~~~~~~~~~~-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~ 400 (551)
.|++++|+.++++++.. -..+++.|..+|...|++++|+.+++++++. +|++| ..|..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777776653321 3566788888888889999999998888863 45554 46889999
Q ss_pred HhhhcCChhHHHHHHHHHHh
Q 048830 401 IYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 401 ~~~~~g~~~~a~~~~~~m~~ 420 (551)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.15 E-value=0.0011 Score=50.40 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=50.9
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCC---CHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPS---DPV-LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
....+.+.|++++|.+.|++++.. +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677788888888888764433 677 888888889999999999999999999999988776
No 212
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.13 E-value=0.04 Score=43.51 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=103.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHH
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 345 (551)
+.-.|..++..++..+.... .+..-|+-++.-....-+-+-..+.++..-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34568888888888887764 24555666665555555666666666666433222 23555555
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 346 ALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 346 A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
...-+-. +..+.......+......|..+.-..++..++..+|.+|.....++++|.+.|+..+|.+++.++-++|++
T Consensus 80 Vi~C~~~-~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVI-NNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHH-TTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH-hcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 5555555 55566667777888888999999999999988878888999999999999999999999999999999985
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.05 E-value=0.0019 Score=49.46 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
...+..+..+|.+.|++++|.+.|++..+ .+..+|..+..+|...|++++|+..|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445555555555555555555554432 233445555555555555555555555444
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.03 E-value=0.0016 Score=64.55 Aligned_cols=92 Identities=13% Similarity=0.007 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCC----ccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----------CHHHHHHHHH
Q 048830 304 QGLVEEGVEYFHMMVSRYN--LKPG----IKHYGCLVDLYGRAGKLEKALEVINTSSPS-----------DPVLWRTLLG 366 (551)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ll~ 366 (551)
.|++++|..++++.++... +-|+ ..+++.|..+|...|++++|+.++++++.. ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566667666666554321 1221 355666777777777777777776654422 4566778888
Q ss_pred HHHhcCcHHHHHHHHHHHHh-----hcCCCcchH
Q 048830 367 SCKIHRNVEIGEIAMKNLVQ-----LEAASAGDY 395 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 395 (551)
.|...|++++|+.+++++++ ++|+.|.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 88888888888888888886 357766543
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.97 E-value=0.0017 Score=49.28 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=53.9
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhhcCCCcc-hHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAG-DYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 364 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
....+...|++++|...++++++.+|.++. .+..++.+|...|++++|.+.+++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456677889999999999999999999999 99999999999999999999999987643
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.97 E-value=0.023 Score=61.59 Aligned_cols=42 Identities=26% Similarity=0.248 Sum_probs=22.1
Q ss_pred HhCCCHHHHHH-HhccCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048830 135 AANGVIEAARS-VFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178 (551)
Q Consensus 135 ~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 178 (551)
...+++++|.+ ++..++. ......++..+.+.|.+++|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecC
Confidence 34566666666 5544330 112255555566666666666544
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.97 E-value=0.003 Score=62.74 Aligned_cols=98 Identities=12% Similarity=-0.064 Sum_probs=61.5
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcC--CCCC----ccchhhhhHHHhhcCCHHHHHHHHhhcCC-------C----CHHHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYN--LKPG----IKHYGCLVDLYGRAGKLEKALEVINTSSP-------S----DPVLW 361 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~ 361 (551)
..+...|++++|..++++.++... +.|+ ..+++.|..+|...|++++|+.+++++++ . ...++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334455666666666666654321 1121 34566666667777777777766665332 2 45567
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh-----hcCCCcchHH
Q 048830 362 RTLLGSCKIHRNVEIGEIAMKNLVQ-----LEAASAGDYV 396 (551)
Q Consensus 362 ~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 396 (551)
+.|...|...|++++|+.+++++++ ++|+.|.+-.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 7788888888888888888888876 3677765443
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.95 E-value=0.012 Score=56.13 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
++.+|..+...+...|++++|...++++++++|. ...|..++.++.-.|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5666666655555556666666666666666643 455566666666666666666666655543
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.92 E-value=0.065 Score=57.98 Aligned_cols=154 Identities=12% Similarity=0.043 Sum_probs=99.6
Q ss_pred HHHHcCCChhHHHH-HHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 61 RAFAQSLSPLQAIF-YYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 61 ~~~~~~g~~~~A~~-l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+ +.. .-.......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i--~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V--EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C--CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhc-----C--CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCC
Confidence 33445677777766 4421 1 313334667777777888888776542 221 12345677899
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 048830 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219 (551)
Q Consensus 140 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 219 (551)
+++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-+.....
T Consensus 668 ~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 668 LTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999987774 567899999999999999999999988753 344555555567776666665555554
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048830 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250 (551)
Q Consensus 220 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 250 (551)
|. ++.-..+|.+.|++++|.+++.+
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 41 23334456667777777666554
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.57 E-value=0.0061 Score=55.74 Aligned_cols=86 Identities=12% Similarity=0.180 Sum_probs=68.6
Q ss_pred HHHHHHHHhhcCCC-----CHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhhcCCC-cchHHHHHHHhhhc-CChhH
Q 048830 343 LEKALEVINTSSPS-----DPVLWRTLLGSCKI-----HRNVEIGEIAMKNLVQLEAAS-AGDYVLLATIYACT-KDEEG 410 (551)
Q Consensus 343 ~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 410 (551)
...|...+++++.. +...|..|...|.. -|+.++|+..|+++++++|+. ..+++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555554443 45578888888887 499999999999999999975 99999999999995 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 048830 411 VARTRKLIKSNGIKTTPG 428 (551)
Q Consensus 411 a~~~~~~m~~~g~~~~~~ 428 (551)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876664343
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.47 E-value=0.015 Score=47.69 Aligned_cols=64 Identities=9% Similarity=-0.032 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhhc-C-CCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHR---NVEIGEIAMKNLVQLE-A-ASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+..+.-.+..++.+.+ +.+++..+++.+++.+ | .+...+..|+-+|.+.|++++|.++++.+.+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 5555556666666655 5557777777777776 5 3456667777777777777777777777755
No 222
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.45 E-value=0.84 Score=47.16 Aligned_cols=243 Identities=8% Similarity=-0.041 Sum_probs=118.1
Q ss_pred HHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC--
Q 048830 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-- 205 (551)
Q Consensus 128 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-- 205 (551)
+.-+..+.+.+++.....++.. +..+...-.....+....|+..+|......+-..| .........++..+.+.|.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 4445556666777776666665 32334333445555666666666666555554443 2222333444444443332
Q ss_pred ----------------hHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHh---HHHHHHHH
Q 048830 206 ----------------LNMGIFLHRIACEMGFVESV-YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL---SWNSMIVG 265 (551)
Q Consensus 206 ----------------~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~ 265 (551)
...|..+... +.++. .....++..+.+- ..+....... .++.. .+..-+.-
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~-----l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQ-----MPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFAS 224 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHT-----CCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHh-----CCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHH
Confidence 2222222211 11221 2223333333322 2222222222 12211 11112223
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCCHh--hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCC
Q 048830 266 YGVHGRGDEAISFFKQMLMAG-FHPDSI--TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 342 (551)
+.+ .+.+.|..+|....... +.+... ....+.......+...++...+...... .++.....-.+....+.|+
T Consensus 225 lar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 225 VAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGD 300 (618)
T ss_dssp HHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTC
T ss_pred HHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCC
Confidence 333 37788888888876543 222221 1222333334445345566666654332 2232223334444457789
Q ss_pred HHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 343 LEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 343 ~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
++.|...|+. |+. .....-=+..+....|+.++|..+|+++.+
T Consensus 301 ~~~a~~~~~~-l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLAR-LPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHH-SCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-ccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999988 765 222222344566778888888888888864
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.43 E-value=0.018 Score=54.95 Aligned_cols=155 Identities=10% Similarity=-0.047 Sum_probs=102.5
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHH--hcCC---hHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhc---cC-----CHH
Q 048830 243 SAFCVFSRMRKRDVLSWNSMIVGYG--VHGR---GDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSH---QG-----LVE 308 (551)
Q Consensus 243 ~A~~~~~~~~~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~---~g-----~~~ 308 (551)
++...... ...+..+|...+.+.. ..++ ..+|..+|++..+. .|+. ..+..+..+|.. .+ ...
T Consensus 182 e~~r~~~~-~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~ 258 (372)
T 3ly7_A 182 MQETLQKI-LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLA 258 (372)
T ss_dssp HHHHHHHH-SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHhcc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHH
Confidence 33334433 3357788888887644 3333 57899999999985 6764 455555555431 11 111
Q ss_pred HHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
.....++........+.+..+|..+...+...|++++|...+++++.. +...|..+...+...|+.++|.+.+++++.
T Consensus 259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 111222221111122446788888888788889999999999996665 666666777888999999999999999999
Q ss_pred hcCCCcchHHHHHHH
Q 048830 387 LEAASAGDYVLLATI 401 (551)
Q Consensus 387 ~~p~~~~~~~~l~~~ 401 (551)
++|..+ +|...-++
T Consensus 339 L~P~~~-t~~~~~~l 352 (372)
T 3ly7_A 339 LRPGAN-TLYWIENG 352 (372)
T ss_dssp HSCSHH-HHHHHHHS
T ss_pred cCCCcC-hHHHHhCc
Confidence 999865 55544433
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.35 E-value=0.00038 Score=67.80 Aligned_cols=239 Identities=12% Similarity=0.051 Sum_probs=148.9
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~ 97 (551)
-.+.+|..|-.++... +++.+|..-|=+ ..|...|..+|....+.|.+++-+..+.-.++. . -++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~--~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~--ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQK--GMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--RESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTS--SSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-C--CSTTTTHHHHH
T ss_pred CCccHHHHHHHHHHcc--CchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-h--cccccHHHHHH
Confidence 3566777888888777 777777766633 446666778888888888888887777544433 3 23444456788
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC------------------------C
Q 048830 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE------------------------R 153 (551)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------------------~ 153 (551)
+|++.+++.+-++++ -.||..-...+.+-|...|.++.|.-+|..+.. .
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888776654443 245655556677778888888888888766642 3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048830 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233 (551)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 233 (551)
++.+|-.+-.+|...+.+.-|.-.--.+.- .|| ....++.-|-..|.+++-..+++.-... -.....+|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 566788877788777777665443322221 111 1122334456666666666666654421 1345667777777
Q ss_pred HHHhcCCHHHHHHHHHhcCC----C-------CHhHHHHHHHHHHhcCChHHHHH
Q 048830 234 MYAKCGNLDSAFCVFSRMRK----R-------DVLSWNSMIVGYGVHGRGDEAIS 277 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 277 (551)
.|+|- ++++-.+.++-... | ....|.-++-.|..-.+++.|..
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 77765 44444444433221 1 34567778888887777776653
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.32 E-value=5.1e-06 Score=80.56 Aligned_cols=262 Identities=10% Similarity=0.044 Sum_probs=172.3
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh
Q 048830 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202 (551)
Q Consensus 123 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 202 (551)
.+.+|..|..++.+.|++.+|++.|-+. .|+..|..+|.+..+.|.+++-+.++...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 3456777788888888888777766443 455567778888888888888888776665543233 333467777877
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 203 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
.+++.+-++++. .|+..-...+.+-+...|.++.|.-+|..+.. |..|...+.+.|++.+|.+.-++
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK- 195 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK- 195 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT-
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh-
Confidence 777655444332 35555556677777777877777777776553 33344556667777766543332
Q ss_pred HHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHH
Q 048830 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPV 359 (551)
Q Consensus 283 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~ 359 (551)
.-+..||-.+-.+|...+.+..|.-.--.+ ...+.....++..|-..|.+++-+.+++.++.. ...
T Consensus 196 -----Ans~ktWKeV~~ACvd~~EfrLAqicGLni------IvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 196 -----ANSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp -----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHH------HCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred -----cCChhHHHHHHHHHhCchHHHHHHHhcchh------cccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 346678888889999998887765543333 234556778899999999999999999987755 888
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh-hc-CC------CcchHHHHHHHhhhcCChhHHHH
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQ-LE-AA------SAGDYVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~-p~------~~~~~~~l~~~~~~~g~~~~a~~ 413 (551)
+++-|.-.|.+.. .++-.+.++.... ++ |. ....|.-+.-.|.+-..|+.|..
T Consensus 265 mFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 265 MFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 8999998888874 3444343333222 22 22 23455566666666666665544
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.32 E-value=0.008 Score=46.30 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
...++..|..++.+.|+++.|...+++++++.|+++.+...+
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 456778888999999999999999999999999987765544
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.80 E-value=0.021 Score=42.88 Aligned_cols=68 Identities=4% Similarity=-0.093 Sum_probs=51.5
Q ss_pred CCccchhhhhHHHhhcCC---HHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 325 PGIKHYGCLVDLYGRAGK---LEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 325 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
.+...+..+..++...++ .++|..++++++.. ++..+..+...+...|++++|...++++++.+|.++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 355666666666654444 67888888775544 778888888888999999999999999999988843
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.52 Score=39.62 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=59.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 048830 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 313 (551)
...++|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.-.|.-.|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345667777777776665 3566777777777777777777777776542 22333344445665554444
Q ss_pred HHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 314 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
-+....+ | -++.-...+.-.|+++++.+++.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333221 1 134444555566777777777766
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.97 Score=37.97 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=64.5
Q ss_pred HHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHH
Q 048830 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211 (551)
Q Consensus 132 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 211 (551)
+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456777777777776665 3566788888888888888888888876643 3334444555666666555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 212 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
+-+.....|- ++.-...+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5554444431 2333444555677777777766544
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.34 E-value=0.066 Score=43.90 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC---CHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHH
Q 048830 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG---LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349 (551)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 349 (551)
..+.+-|.+....|. ++..+-..+..++++++ ++++|..+|+...+. . .|+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~----------------------- 68 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKE----------------------- 68 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHH-----------------------
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-Ccc-----------------------
Confidence 344445555444442 45555555555666655 444666666655543 1 110
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 350 INTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 350 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
.+...+..|.-+|.+.|++++|.+.++++++.+|++..+..
T Consensus 69 ------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 69 ------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp ------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ------chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 02345556777889999999999999999999999865443
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.06 E-value=0.1 Score=39.91 Aligned_cols=64 Identities=9% Similarity=-0.117 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc-------CCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE-------AASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+..-+..|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|..+++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455677888888899999999999988753 23466899999999999999999999998875
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.83 E-value=2.2 Score=39.03 Aligned_cols=86 Identities=15% Similarity=0.202 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhc-----CCHHHHHHHHHhcCC--C--CHhHHHHHHHHHHhc-CChHHH
Q 048830 207 NMGIFLHRIACEMGFV-ESVYVGNALVDMYAKC-----GNLDSAFCVFSRMRK--R--DVLSWNSMIVGYGVH-GRGDEA 275 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~-----g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~-g~~~~A 275 (551)
..|+..++++++.... .+...|..|...|.+. |+.++|.+.|++..+ | ++.++......+++. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555555554311 1245667777777773 777777777777652 3 366677777777774 778888
Q ss_pred HHHHHHHHHcCCC--CCHh
Q 048830 276 ISFFKQMLMAGFH--PDSI 292 (551)
Q Consensus 276 ~~~~~~m~~~g~~--p~~~ 292 (551)
.+.+++....... |+..
T Consensus 260 ~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 260 DEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHcCCCCCCCChh
Confidence 8888888776544 5443
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.93 E-value=0.71 Score=36.31 Aligned_cols=38 Identities=16% Similarity=-0.030 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 397 (551)
....|.-++.+.|+++.|.+.++.+++.+|+|..+...
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34456778899999999999999999999998765543
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.60 E-value=0.29 Score=51.54 Aligned_cols=55 Identities=11% Similarity=-0.061 Sum_probs=51.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 365 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
...|...|+++.|+.+.++++..-|.+-.+|..|+.+|...|+|+.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4667889999999999999999999999999999999999999999999998873
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.01 E-value=0.76 Score=44.64 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH-----hCCCccCCc
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK-----SNGIKTTPG 428 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~ 428 (551)
....++.++...|+.+++...++.++..+|-+...|..|+.+|...|+..+|.+.|+... +.|+.|.|.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344567788889999999999999999999999999999999999999999999998764 358888653
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.91 E-value=0.36 Score=37.97 Aligned_cols=64 Identities=11% Similarity=-0.065 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhhc-C-CCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHRNVEI---GEIAMKNLVQLE-A-ASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+..+--.+..++.+..+... ++.+++.+++.+ | ........|+-++.+.|++++|.+..+.+.+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444455556665555444 888888888776 5 3455677899999999999999999999876
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.55 E-value=3.2 Score=32.90 Aligned_cols=85 Identities=11% Similarity=-0.051 Sum_probs=56.8
Q ss_pred hCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215 (551)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 215 (551)
.||++......+-.+. .+....+.-+..+...|+-++-.+++..+.. +.+|++.....+.+||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3444444444444332 2334456667777788888888888877544 3467777778888888888888888888888
Q ss_pred HHHhCCC
Q 048830 216 ACEMGFV 222 (551)
Q Consensus 216 ~~~~g~~ 222 (551)
+-+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 8887754
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.44 E-value=6.8 Score=36.34 Aligned_cols=190 Identities=11% Similarity=0.024 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHH----HH
Q 048830 105 LNKCQELHGFVIRSGYE-RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL----YE 179 (551)
Q Consensus 105 ~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~ 179 (551)
+++.++-++.-++.|-- --...|.++..=|.+.+++++|++++.. -...+.+.|+...|-++ .+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 44444444444444411 0123456677778899999999988643 23445666776665554 45
Q ss_pred HhhhCCcccCHHHHHHHHHHHHhcCChH-HHHHHHHHHH----HhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 180 RMRFEDVGLDGFTLVCLLSSCAHVGALN-MGIFLHRIAC----EMGF--VESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 180 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
...+.+++++..+...++..+.....-+ .=..+...++ +.|- .-++.....+...|.+.|++.+|+..|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 5566788888888888887776533211 1123333333 3332 2467888999999999999999999887433
Q ss_pred CCCHhHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 048830 253 KRDVLSWNSMIVGYGVH---GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320 (551)
Q Consensus 253 ~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 320 (551)
..|...+..|+.-+... |...++-- ..-..++. |...+++..|..+|+...++
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 33555665555544443 44433211 11222332 44568899999998887654
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.75 E-value=0.32 Score=39.36 Aligned_cols=54 Identities=6% Similarity=-0.154 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
+|.++|..+|+.++.+...-+..|...+..-.++|+...|++++.+....+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 678888888888877754446677788888888899999999998887766554
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.00 E-value=0.89 Score=36.83 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=62.8
Q ss_pred CCCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 048830 253 KRDVLSWNSMIVGYGVHGRG------DEAISFFKQMLMAGFHPDSI-TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325 (551)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 325 (551)
..|..+|-..+......|++ ++..++|++.... ++|+.. .+...+.-+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIr---------------------- 66 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVR---------------------- 66 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHH----------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHH----------------------
Confidence 35677777777777777777 6667777766664 455421 11111111110
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
|. .+...++.++|.++|+.+... =..+|-.....-.++|+++.|..++.+++.+.|....
T Consensus 67 ----YA----~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 67 ----FA----ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp ----HH----HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred ----HH----HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 00 001124444455554442111 2456667777777889999999999999998877543
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.72 E-value=1.4 Score=36.48 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=20.9
Q ss_pred hhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHH
Q 048830 331 GCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLG 366 (551)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~ 366 (551)
--+..+|.+.|++++|+.+++. +|. ++.+--.|..
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~-Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDG-IPSRQRTPKINMLLAN 163 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-SCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHhc-CCchhcCHHHHHHHHH
Confidence 3455666677777777777777 665 4444444433
No 242
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.46 E-value=3.3 Score=30.68 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=63.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 204 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++.. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778877777777653 33333333456778999999999999999999999988765 46788888888887777
Q ss_pred HcCCCCCHhhHH
Q 048830 284 MAGFHPDSITFL 295 (551)
Q Consensus 284 ~~g~~p~~~t~~ 295 (551)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 765 55555554
No 243
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.09 E-value=3 Score=30.80 Aligned_cols=87 Identities=10% Similarity=0.040 Sum_probs=64.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 204 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++.. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778877777776653 33333333456778999999999999999999999988765 47888888888887887
Q ss_pred HcCCCCCHhhHH
Q 048830 284 MAGFHPDSITFL 295 (551)
Q Consensus 284 ~~g~~p~~~t~~ 295 (551)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 55555554
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.99 E-value=15 Score=34.36 Aligned_cols=168 Identities=11% Similarity=0.041 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHH----HHhhhCCcccCHHHHHHHHHHHH
Q 048830 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY----ERMRFEDVGLDGFTLVCLLSSCA 201 (551)
Q Consensus 126 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 201 (551)
.|.++..=|.+.+++++|++++-. =...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666778889999999887532 233455666665554443 44556677888887777777776
Q ss_pred hcCChH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHH
Q 048830 202 HVGALN-MGIFLHRIAC----EMG--FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274 (551)
Q Consensus 202 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 274 (551)
....-+ .=..+...++ +.| ..-|+.....+...|.+.+++.+|+..|---.++.+..+..|+.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 554311 1122333333 333 33467788889999999999999999985323233356655554444433321
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 275 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
.+|...-..++. |...+++..|..+++...+
T Consensus 185 -------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222333333 4556788999888777665
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.66 E-value=26 Score=37.80 Aligned_cols=50 Identities=14% Similarity=0.005 Sum_probs=21.8
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 202 HVGALNMGIFLHRIACEMGFVESVYVG--NALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
..|+.+.+..+.+.+... ..|..... .++.-+|+..|+.....+++..+.
T Consensus 536 ~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 445555555555554432 11222111 123334555555555555555443
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.85 E-value=25 Score=39.37 Aligned_cols=113 Identities=11% Similarity=-0.039 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--------------------------CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 229 NALVDMYAKCGNLDSAFCVFSRMRKR--------------------------DVLSWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 229 ~~li~~y~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
-.+..+|..+|++++|.+.|.+.... -..-|..++..|.+.|.++.+++.-+..
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556666777777777777665310 0012444555566666666666555555
Q ss_pred HHcCCCCCH----hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHH
Q 048830 283 LMAGFHPDS----ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344 (551)
Q Consensus 283 ~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 344 (551)
.+....-+. ..|..+..++...|++++|...+-.+... . --......||..++..|.++
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~--~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P--LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--SCHHHHHHHHHHHHHHCCHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--HHHHHHHHHHHHHHhCCChh
Confidence 443211111 13455556666666666666655544321 1 12233444555455444443
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.23 E-value=7.4 Score=28.80 Aligned_cols=88 Identities=9% Similarity=0.025 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 048830 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182 (551)
Q Consensus 103 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (551)
...++|.-+-+.+...|- ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+..+.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456778777777776552 22232333456789999999999999999999999987765 47888888888777777
Q ss_pred hCCcccCHHHHHH
Q 048830 183 FEDVGLDGFTLVC 195 (551)
Q Consensus 183 ~~~~~p~~~t~~~ 195 (551)
..| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 555555543
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.13 E-value=24 Score=34.66 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HhhHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCC--CC--c
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMA--GFHPD---SITFLGLLCGCSHQGLVEEGVEYFHMMVSRY-NLK--PG--I 327 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--p~--~ 327 (551)
....|...|...|++.+|..++..+... |..+. ...+..-+..|...+++.+|..++.++.... ... |+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3455778888899999999999888653 22222 1345666778889999999999998874321 122 22 3
Q ss_pred cchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 328 KHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
..|.+.+..+...+++.+|...|.+
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e 243 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQE 243 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5677888888899999999888777
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.89 E-value=3.6 Score=32.93 Aligned_cols=48 Identities=6% Similarity=-0.041 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHhhcCCC-cchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 373 NVEIGEIAMKNLVQLEAAS-AGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+..+++.+++.++..+|.. ......|+-++.+.|++++|+++.+.+.+
T Consensus 57 di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 57 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3456666666666666643 33444566677777777777777766654
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.84 E-value=7.8 Score=28.71 Aligned_cols=88 Identities=11% Similarity=0.051 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 048830 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182 (551)
Q Consensus 103 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (551)
...++|.-+-+.+...|- ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+..+.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456778877777776552 22232333456789999999999999999999999987765 46788888887777777
Q ss_pred hCCcccCHHHHHH
Q 048830 183 FEDVGLDGFTLVC 195 (551)
Q Consensus 183 ~~~~~p~~~t~~~ 195 (551)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 455555543
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.84 E-value=4.1 Score=36.67 Aligned_cols=118 Identities=12% Similarity=0.059 Sum_probs=72.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCc----cchhhhhHHHhhc
Q 048830 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI----KHYGCLVDLYGRA 340 (551)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~ 340 (551)
...+.|..++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+ +.|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 4556788888888777777653 44555566677788888888888888777753 34442 233333332
Q ss_pred CCHHHHH-HHHhh-cCCC---CHHHHHHH-HHHH--HhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 341 GKLEKAL-EVINT-SSPS---DPVLWRTL-LGSC--KIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 341 g~~~~A~-~~~~~-~~~~---~~~~~~~l-l~~~--~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
+..+ ++|.. ..|. .+..|..+ +.+. ...|+.+.|..+-.++++.-|..++
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1221 23332 1222 34445444 4443 4468899999999988888777655
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.76 E-value=2.9 Score=34.50 Aligned_cols=122 Identities=11% Similarity=0.050 Sum_probs=61.6
Q ss_pred cCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCc-------cchhhhhHHHhhcCCHHHHHHHHhhcCC
Q 048830 285 AGFHPDS--ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI-------KHYGCLVDLYGRAGKLEKALEVINTSSP 355 (551)
Q Consensus 285 ~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 355 (551)
.|+.|.. .++..-+..+...|.++.|+-+.+.+....+..|++ .++..+.+++...|++..|...|++++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3555543 334455566677777777777777655443333442 2445566677777777777777766322
Q ss_pred C------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 356 S------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 356 ~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
. +..+..++. ...... .-.. .+.+...-..++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCcccccc----ccCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 111110000 000000 0000 0122245567899999999999999998764
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.23 E-value=26 Score=33.66 Aligned_cols=163 Identities=11% Similarity=-0.046 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CCHhHH--
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEM-GFVE---SVYVGNALVDMYAKCGN-LDSAFCVFSRMRK---RDVLSW-- 259 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~-- 259 (551)
......+...|.+.|+.++...++...... +..+ .......|++.+....+ .+.-.++..+..+ .+-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888888888888777765431 1111 23455677777766433 3333333333221 112233
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----hhHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCCccc
Q 048830 260 ----NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS-----ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN-LKPGIKH 329 (551)
Q Consensus 260 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~ 329 (551)
.-++..|...|++.+|..++.++.+.=-..|. ..+..-+..|...+++.++...+.......+ +.|++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 14677888899999998888888773222222 2344556677788888888888887754321 2233222
Q ss_pred ----hhhhhHHHh-hcCCHHHHHHHHhh
Q 048830 330 ----YGCLVDLYG-RAGKLEKALEVINT 352 (551)
Q Consensus 330 ----~~~li~~~~-~~g~~~~A~~~~~~ 352 (551)
..+-+-++. ..+++.+|...|-+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 122233445 67888888887777
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.21 E-value=4.3 Score=39.30 Aligned_cols=68 Identities=9% Similarity=-0.112 Sum_probs=47.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH-----hCCCCChhHH
Q 048830 58 SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR-----SGYERCVVVS 127 (551)
Q Consensus 58 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~ 127 (551)
.++..+...|++.+|+..+..+....+ -+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|.+.+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344566677777777777777776654 4666777777777777777777777776643 4777776553
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.82 E-value=19 Score=40.48 Aligned_cols=67 Identities=3% Similarity=-0.202 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc-----hHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG-----DYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
...|.-++..+.+++.++.+.++.+.+++..+.+.. .|..+...+...|++++|...+-.+.+...+
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 345777788888999999999999999886543322 5777888999999999999988777665443
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.70 E-value=11 Score=39.74 Aligned_cols=122 Identities=13% Similarity=0.027 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhc-----------CCCCHhH--
Q 048830 194 VCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN-LDSAFCVFSRM-----------RKRDVLS-- 258 (551)
Q Consensus 194 ~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~-----------~~~~~~~-- 258 (551)
..++..+.-.++ .+.|..+++.+.+.....+......++....+.++ --+|.++..+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555555 46677777777765432233333344444433332 12233333222 2222211
Q ss_pred --------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHh
Q 048830 259 --------WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMM 317 (551)
Q Consensus 259 --------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~ 317 (551)
...-..-+...|+++-|+++-++.... .|+ -.||..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 111123455678888888888888875 444 578888888888888888888888876
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.38 E-value=31 Score=31.90 Aligned_cols=167 Identities=9% Similarity=0.015 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF----FKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 227 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
.|.++..=|.+.+++++|.+++.. -...+.++|+...|.++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344555567788888888887554 23345667777666654 444455678888888777777665
Q ss_pred ccCCHH-HHHHHHHHhH---HhcCCCC--CccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhc---C
Q 048830 303 HQGLVE-EGVEYFHMMV---SRYNLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIH---R 372 (551)
Q Consensus 303 ~~g~~~-~a~~~~~~~~---~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~---g 372 (551)
....-+ .=.++.+.++ .+.|-.+ ++.....+...|.+.|++.+|+..|-. -.. ++..+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence 532111 1112222222 1112222 677788899999999999999987754 221 455555555444333 4
Q ss_pred cHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
...++....-+ ..--|...|+...|..+++...
T Consensus 183 ~~~e~dlf~~R--------------aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAEFFSR--------------LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHH
Confidence 43333222211 2234556788889988887654
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.29 E-value=5.9 Score=29.48 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHH
Q 048830 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336 (551)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 336 (551)
+.-+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+-+..+.+ +...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4446667777777778899999999999999999999999999998876533 334557666653
No 259
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.86 E-value=23 Score=30.17 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=71.6
Q ss_pred HHHHHHHhhcCCC---CHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhhc--CCCcchHHHHHHHhhhcCChhHHHHHHH
Q 048830 344 EKALEVINTSSPS---DPVLWRTLLGSCKI--HRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 344 ~~A~~~~~~~~~~---~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
+.+...|.. .+. |+......+..-.. .++...+..+|..+...+ -.-+..|...+..+...|++.+|.++++
T Consensus 61 Erc~~~F~~-~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQD-METYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTT-CGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcc-cccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444544 333 55444443333222 455778889999988754 5567789999999999999999999999
Q ss_pred HHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCccCC
Q 048830 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD 473 (551)
Q Consensus 417 ~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~ 473 (551)
.-.+++-.| .+.+.....+...+|...+++-+
T Consensus 140 ~GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 140 LGAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 888877766 34455666677778887777333
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.85 E-value=14 Score=27.59 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 048830 71 QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR 132 (551)
Q Consensus 71 ~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 132 (551)
+..+-++.+...... |++......++||-+.+++..|.++++-++... .+...+|..++.
T Consensus 28 e~rrglN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 555566666677777 888888888888888888888888888776543 233445665543
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.47 E-value=4.5 Score=31.94 Aligned_cols=48 Identities=6% Similarity=-0.041 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHhhcCCC-cchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 373 NVEIGEIAMKNLVQLEAAS-AGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+..+++.+++.+++.+|.. ...+..|+-++.+.|++++|+++.+.+.+
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4456777777777766633 44556677777777777777777776654
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.98 E-value=45 Score=31.11 Aligned_cols=134 Identities=10% Similarity=-0.040 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHH----HHHHHHcCCCCCChhhHHHHHH
Q 048830 22 HGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFY----YNHMLMASLSRPDTFTFTFTLK 97 (551)
Q Consensus 22 ~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~~~~~pd~~~~~~ll~ 97 (551)
+|.++..-|.+. +++++|.+++-.- ...+.+.|+...|-++ .+...+.+.+ +|..+...++.
T Consensus 37 ~~RTi~~Ry~~~--k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~-~~~~~~~rL~~ 102 (336)
T 3lpz_A 37 ETRLVAARYSKQ--GNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQR-VDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhh--cCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Confidence 455555666666 6666666654321 2234455555544443 3444556666 77777777776
Q ss_pred HHhccCChH-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcC
Q 048830 98 ACERVKALN-KCQELHGFVI----RSG--YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169 (551)
Q Consensus 98 ~~~~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 169 (551)
.+.....-+ .=..+...++ +.| ..-|+.....+...|.+.+++.+|+.-|-.-..+.+..+..|+.-+...+
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 665554311 1122333333 333 23356677777888888888888887774222222355555554444443
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.85 E-value=55 Score=32.05 Aligned_cols=181 Identities=10% Similarity=-0.004 Sum_probs=90.6
Q ss_pred CChhHHHHHHHHHHHcC-----CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCChhHHHHHHH----HHHh
Q 048830 67 LSPLQAIFYYNHMLMAS-----LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS-GYERCVVVSTNLMR----GYAA 136 (551)
Q Consensus 67 g~~~~A~~l~~~m~~~~-----~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~----~y~~ 136 (551)
|++++|++.+-.+.+.. .. ........++..|...++++...+.+..+.+. |..+.. ...++. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~-s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLA-SSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTT-TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchh-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 56777777665554321 11 23445667778888888888877766555432 322221 222332 2222
Q ss_pred CCC--HHHHHHHhccCCC---C-------ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccC-----HHHHHHHHHH
Q 048830 137 NGV--IEAARSVFDNMPE---R-------DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD-----GFTLVCLLSS 199 (551)
Q Consensus 137 ~g~--~~~A~~~~~~m~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~ 199 (551)
... .+.-..+.+.+.. . .......|...|...|++.+|..++..+...-...+ ...+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 222 2222233322221 1 112234567777778888888888877653211111 1244455566
Q ss_pred HHhcCChHHHHHHHHHHHHh----CCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048830 200 CAHVGALNMGIFLHRIACEM----GFVES--VYVGNALVDMYAKCGNLDSAFCVFSR 250 (551)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~----g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~ 250 (551)
|...+++..|..+...+... ...|+ ...+...+..+...+++.+|.+.|.+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e 243 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQE 243 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 66666666666666654321 11111 12334445555555555555554443
No 264
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=75.60 E-value=0.92 Score=26.84 Aligned_cols=10 Identities=50% Similarity=1.188 Sum_probs=8.5
Q ss_pred CCCcCCCCCC
Q 048830 541 RDGLCSCGDY 550 (551)
Q Consensus 541 ~~g~csc~~~ 550 (551)
++|.||||-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 5789999976
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.29 E-value=24 Score=27.81 Aligned_cols=38 Identities=11% Similarity=-0.035 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
...+--|.-++.+.|+++.|.+..+.+++.+|+|..+-
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 34455677788888999999999999999999886543
No 266
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=74.08 E-value=86 Score=32.44 Aligned_cols=79 Identities=10% Similarity=-0.051 Sum_probs=35.7
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---cC
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK---CG 239 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~---~g 239 (551)
..+.-.|+++.|++++... ...|.+++...+.-+.-.+- ...++..- .+ .| ..-+..||..|.+ ..
T Consensus 302 ~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~~t 370 (661)
T 2qx5_A 302 QTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFRYS 370 (661)
T ss_dssp HHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTT
T ss_pred HHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhhcC
Confidence 3344567777777766543 24555666555544332221 11111110 00 11 2224556666654 46
Q ss_pred CHHHHHHHHHhcC
Q 048830 240 NLDSAFCVFSRMR 252 (551)
Q Consensus 240 ~~~~A~~~~~~~~ 252 (551)
+..+|.+.|--+.
T Consensus 371 d~~~Al~Y~~li~ 383 (661)
T 2qx5_A 371 DPRVAVEYLVLIT 383 (661)
T ss_dssp CHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHh
Confidence 6777777666553
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.13 E-value=8.1 Score=34.72 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=37.0
Q ss_pred HHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 336 LYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
.+.+.|++++|++.....++ .|...-..|+..++..|+++.|..-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 44566777777665544233 266666677777777777777777777777777663
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.13 E-value=14 Score=29.23 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHH
Q 048830 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336 (551)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 336 (551)
.-+..+-++.+....+.|+.......+.+|.+.+++..|.++|+-...+. .+...+|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 34556666777777889999999999999999999999999999887653 3445567766653
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.52 E-value=30 Score=27.35 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 048830 71 QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR 132 (551)
Q Consensus 71 ~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 132 (551)
+..+-++.+...+.. |++......+++|-+.+++..|.++++-++... .+...+|..++.
T Consensus 71 ElrrglN~l~~~DlV-PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 444555566666776 888888888888888888888888877776542 333445555543
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.97 E-value=30 Score=30.85 Aligned_cols=116 Identities=12% Similarity=0.023 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCCCChHHHHHHHhcCCCCChh---hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCCh---hhHHHHHH
Q 048830 24 EWLLNSYAISVSSSLSYAQLLFNQIQNPQTQ---AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT---FTFTFTLK 97 (551)
Q Consensus 24 ~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~---~~~~~ll~ 97 (551)
++.+...++. |+++....+++.-...+.. .-.+.+...+..|+.+ +++.+.+.|.. |+. ...+ .+.
T Consensus 6 ~~~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~-~~~~~~~g~t-~L~ 77 (285)
T 1wdy_A 6 NHLLIKAVQN--EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGAD-PVLRKKNGAT-PFL 77 (285)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCC-TTCCCTTCCC-HHH
T ss_pred chHHHHHHHc--CCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCC-CcccCCCCCC-HHH
Confidence 4455666677 8998888888765443322 1123455555667654 44444555543 432 2222 333
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCCHHHHHHHhccCC
Q 048830 98 ACERVKALNKCQELHGFVIRSGYERCVVV--STNLMRGYAANGVIEAARSVFDNMP 151 (551)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~m~ 151 (551)
..+..|+.+- .+.+++.|..++... ..+.+...++.|+.+-...+++.-.
T Consensus 78 ~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 78 LAAIAGSVKL----LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp HHHHHTCHHH----HHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHcCCHHH----HHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC
Confidence 3445566544 444455565443211 1123444566777777777776543
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=69.67 E-value=35 Score=27.63 Aligned_cols=78 Identities=12% Similarity=0.027 Sum_probs=53.3
Q ss_pred HHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc--CCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 344 EKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 344 ~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
+.+...|.. .+. |+......+..-....+ +..+|+.+...+ -.-+..|...+..+...|++.+|.++++.-
T Consensus 52 Erc~~~f~~-~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 127 (152)
T 4a1g_A 52 EHLMKEFLD-KKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRG 127 (152)
T ss_dssp HHHHHHHTT-CGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcc-cccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555554 443 55554444443333333 677888887654 556778889999999999999999999888
Q ss_pred HhCCCcc
Q 048830 419 KSNGIKT 425 (551)
Q Consensus 419 ~~~g~~~ 425 (551)
.+++-.|
T Consensus 128 i~~~A~P 134 (152)
T 4a1g_A 128 IQNQAEP 134 (152)
T ss_dssp HHTTCBS
T ss_pred HHcCCcc
Confidence 7777666
No 272
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=68.51 E-value=1.4 Score=29.81 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=17.1
Q ss_pred ceEEEecCCcccccCCCcCC
Q 048830 527 RDLIVRDRVRYHHFRDGLCS 546 (551)
Q Consensus 527 r~i~~~d~~~~h~f~~g~cs 546 (551)
..|=+.|.+-.|+|+|||-+
T Consensus 8 k~v~LkDGstvyiFKDGKMa 27 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMG 27 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEE
T ss_pred eeEecCCCcEEEEEcCCcee
Confidence 45778899999999999854
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.51 E-value=45 Score=27.39 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc--CCCcchHHHHHHHhhhcCChhHHHHHHHH
Q 048830 343 LEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYACTKDEEGVARTRKL 417 (551)
Q Consensus 343 ~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 417 (551)
++.+...|.. .+. |+......+..-...++ +..+|..+...+ -.-+..|...+..+...|++.+|.++++.
T Consensus 46 LErc~~~f~~-~~~YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~ 121 (164)
T 2wvi_A 46 LERAVEALQG-EKRYYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQE 121 (164)
T ss_dssp HHHHHHHTTT-CGGGTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhh-hhhhccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455555554 333 65555444433333333 666788887654 55677899999999999999999999998
Q ss_pred HHhCCCcc
Q 048830 418 IKSNGIKT 425 (551)
Q Consensus 418 m~~~g~~~ 425 (551)
-.+.+-.|
T Consensus 122 Gi~~~A~P 129 (164)
T 2wvi_A 122 GIQQKAEP 129 (164)
T ss_dssp HHHTTCBS
T ss_pred HHHcCCCc
Confidence 88877766
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.22 E-value=65 Score=27.20 Aligned_cols=154 Identities=10% Similarity=0.035 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 048830 39 SYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS 118 (551)
Q Consensus 39 ~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 118 (551)
+....+.+.+..+|...-...+..+.+.|.. .+...+..+... +|...-...+.++...++.+....+ ..+.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l-- 90 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALKD----EDAWVRRAAADALGQIGDERAVEPL-IKAL-- 90 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC----SCHHHHHHHHHHHHHHCCGGGHHHH-HHHT--
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHHHHH-HHHH--
Confidence 3334444444455555555555555555553 333333333332 4555555555666665553322222 2222
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHH
Q 048830 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS 198 (551)
Q Consensus 119 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 198 (551)
-.++..+-...+.+..+.|+.+....+.+.+..++...-...+.++.+.|..+ ++..+..+.+ .++...-...+.
T Consensus 91 -~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 91 -KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp -TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 24566666666666666666555555555555566655555666666665543 4444444432 345555555666
Q ss_pred HHHhcCC
Q 048830 199 SCAHVGA 205 (551)
Q Consensus 199 ~~~~~~~ 205 (551)
++...+.
T Consensus 166 aL~~~~~ 172 (211)
T 3ltm_A 166 ALGEIGG 172 (211)
T ss_dssp HHHHHCS
T ss_pred HHHHhCc
Confidence 6666655
No 275
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=63.39 E-value=1.3 Score=22.63 Aligned_cols=13 Identities=46% Similarity=1.612 Sum_probs=10.3
Q ss_pred ccCCCcC--CCCCCC
Q 048830 539 HFRDGLC--SCGDYW 551 (551)
Q Consensus 539 ~f~~g~c--sc~~~w 551 (551)
.|.+|.| .||+-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5888888 688777
No 276
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=62.98 E-value=1.7e+02 Score=31.64 Aligned_cols=248 Identities=9% Similarity=-0.047 Sum_probs=127.6
Q ss_pred HHhCCCHHHHHHHhccCCC----CCh--hHHHHHHHHHHhcCChHHHHHHHHHhhhCCc-------ccCHHHHHHHHHHH
Q 048830 134 YAANGVIEAARSVFDNMPE----RDL--VSWNSIISCYTQASFHLEALKLYERMRFEDV-------GLDGFTLVCLLSSC 200 (551)
Q Consensus 134 y~~~g~~~~A~~~~~~m~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~t~~~ll~~~ 200 (551)
....|+.++++.+++.... .+. ..-..+.-+.+..|..++++.++.......- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456777777777776553 121 2233444556667776777777766554211 01111112222222
Q ss_pred HhcCC-hHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHH
Q 048830 201 AHVGA-LNMGIFLHRIACEMGFVESV--YVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DVLSWNSMIVGYGVHGRGDE 274 (551)
Q Consensus 201 ~~~~~-~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 274 (551)
+..|. -+++...+..++...- +.. ...-+|...|.-.|+-+....++..+.+ . ++.-.-++.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22232 2344444444444221 111 1223445556667777777777665432 2 22223334445667888888
Q ss_pred HHHHHHHHHHcCCCCCHhh--HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 275 AISFFKQMLMAGFHPDSIT--FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 275 A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
+..+.+.+.... .|.... -..+..+|+..|+.....+++..+.+. ...++.-...+.-++.-.|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 888888887631 222221 123455788889988888888888653 222333333333344446666666777765
Q ss_pred cCCC-CHHHHHHHHHHH--HhcCcH-HHHHHHHHHHH
Q 048830 353 SSPS-DPVLWRTLLGSC--KIHRNV-EIGEIAMKNLV 385 (551)
Q Consensus 353 ~~~~-~~~~~~~ll~~~--~~~g~~-~~a~~~~~~~~ 385 (551)
.+.. |+.+-.....++ ...|+. .++...+..+.
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 2333 555544433333 223332 45666666665
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.98 E-value=87 Score=27.57 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=10.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCC
Q 048830 269 HGRGDEAISFFKQMLMAGFHPD 290 (551)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~~p~ 290 (551)
.|......++++.+.+.|..++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSS
T ss_pred ccccchHHHHHHHHHHcCCCCC
Confidence 3443334445555555555444
No 278
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.77 E-value=62 Score=25.82 Aligned_cols=37 Identities=11% Similarity=-0.028 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
....-|.-++.+.|++++|.+..+.+++.+|+|..+-
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444567788999999999999999999999986543
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.43 E-value=40 Score=32.84 Aligned_cols=90 Identities=9% Similarity=-0.020 Sum_probs=51.3
Q ss_pred cchhhhhHHHhhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc--CCCcc----h
Q 048830 328 KHYGCLVDLYGRAGKLEKALEVINTSSPS-------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE--AASAG----D 394 (551)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~----~ 394 (551)
.+...+.+.|.+.|++++|.+.|.+ +.. -...+-..+..+...+|+..+...++++...- ..++. .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~-~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGK-SLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHH-HHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3455566666666666666666655 221 34455556666666677777777777665432 11221 2
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHH
Q 048830 395 YVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 395 ~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
...-+.++...++|.+|.+.|-.+
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHH
Confidence 223444556667777777766554
No 280
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=59.76 E-value=76 Score=26.49 Aligned_cols=152 Identities=13% Similarity=0.053 Sum_probs=64.7
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh
Q 048830 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202 (551)
Q Consensus 123 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 202 (551)
|..+....+....+.|..+....+.+.+..++...-...+.++...|..+ +...+..+.. .++...-...+.++..
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 33333333334444443333333334444444444444444444444432 2333333332 2444454555555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 203 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
.+..+....+.. +. -.++..+-...+.++.+.|+.+....+..-+..++...-...+.++...|. .++...+..+
T Consensus 103 ~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~ 177 (201)
T 3ltj_A 103 IGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKL 177 (201)
T ss_dssp HCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred hCcHHHHHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 554332222222 11 134444555555555555554433333333444554444444555555544 2344444444
Q ss_pred H
Q 048830 283 L 283 (551)
Q Consensus 283 ~ 283 (551)
.
T Consensus 178 l 178 (201)
T 3ltj_A 178 A 178 (201)
T ss_dssp H
T ss_pred H
Confidence 3
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=57.57 E-value=89 Score=26.60 Aligned_cols=54 Identities=7% Similarity=-0.012 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 048830 69 PLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER 122 (551)
Q Consensus 69 ~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 122 (551)
..++.++|..|...|+..--..-|......+...|++.+|.++|..-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 446666666666666542233345555555556666666666666666655444
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.10 E-value=48 Score=25.91 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCH---hHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHh
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDV---LSWNSMIVGYGVHGR--GDEAISFFKQMLMAGFHPDSI 292 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 292 (551)
.+.++.-|...|+.++|.+.++++..|.. ....++..++-+.+. .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45678888888999999999999876632 344455555555432 356677788887766554443
No 283
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=56.64 E-value=1.8e+02 Score=29.82 Aligned_cols=239 Identities=11% Similarity=-0.101 Sum_probs=120.0
Q ss_pred CChHHHHHHHHHhhhCCcccCHHHHHHHHHH----HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 048830 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSS----CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244 (551)
Q Consensus 169 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 244 (551)
.+.+.|...|....+.. ..+......+-.. ....+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 36788888887775432 2233222222222 223342445555555444332 2333333344445567888888
Q ss_pred HHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 048830 245 FCVFSRMRKRD---VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321 (551)
Q Consensus 245 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 321 (551)
...|+.|.... ....--+..++...|+.++|..+|+.+.. + .+|..++.+ .+.|..-. + ...
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~--~~fYg~lAa-~~Lg~~~~-------~-~~~ 369 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----Q--RGFYPMVAA-QRIGEEYE-------L-KID 369 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----S--CSHHHHHHH-HHTTCCCC-------C-CCC
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----C--CChHHHHHH-HHcCCCCC-------C-CCC
Confidence 88888887532 22223345567778888888888888764 1 134443322 12221000 0 000
Q ss_pred CCCCC-cc-----chhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc---CCC
Q 048830 322 NLKPG-IK-----HYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE---AAS 391 (551)
Q Consensus 322 ~~~p~-~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~ 391 (551)
...+. .. .-..-+..+...|....|...+....+. +..-...+.......|..+.+.....+....+ ..-
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~ 449 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERF 449 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHS
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhC
Confidence 00010 00 0112244567788888888877663443 54444455555567788887776554332221 011
Q ss_pred cchHHHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 392 AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
|..|...+.-+++.-.++...-.--...+.+..|
T Consensus 450 P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 450 PLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp CCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred CcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 3355666666666555555433322223444444
No 284
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.05 E-value=34 Score=33.39 Aligned_cols=94 Identities=10% Similarity=-0.089 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHhhHH--
Q 048830 227 VGNALVDMYAKCGNLDSAFCVFSRMRK------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA---GFHPDSITFL-- 295 (551)
Q Consensus 227 ~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~-- 295 (551)
+...+.+.|.++|++++|.+.|.++.. .-+..+-..+..+...+++..+...+.+.... +-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556788888888888888888888753 23456666777788888888888888776542 2223222111
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHh
Q 048830 296 GLLCGCSHQGLVEEGVEYFHMMVSR 320 (551)
Q Consensus 296 ~ll~~~~~~g~~~~a~~~~~~~~~~ 320 (551)
.-...+...+++..|-..|-.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111234456777777777666554
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=53.93 E-value=99 Score=26.00 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=28.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 223 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
++..+-...+.++.+.|+.+....+..-+..++...-...+.++.+.+. .++...+..+..
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 4444444455555555554333333333444555444445555555554 334444444443
No 286
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=52.69 E-value=1.6e+02 Score=28.12 Aligned_cols=89 Identities=10% Similarity=0.010 Sum_probs=47.0
Q ss_pred CCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 324 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
.|....+..|+.+| +.+++.+...+++. ... |+.....+-..+.. .-...+.++ ..|-....+..++
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~-~~~~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i--~~pYsrIsl~~iA 323 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKE-YKKELAEDVIVQAHLGTLYDT-----MLEQNLCRI--IEPYSRVQVAHVA 323 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHH-STTTTTTSHHHHHHHHHHHHH-----HHHHHHHHH--HTTCSEEEHHHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHH-HHHHHhcChHHHHHHHHHHHH-----HHHHHHHHH--hHhhceeeHHHHH
Confidence 45555566666665 45567666666655 322 55432111111100 011112222 2466666677777
Q ss_pred HHhhhcCChhHHHHHHHHHHhCCC
Q 048830 400 TIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
..+.- ..+++.....+|...|.
T Consensus 324 ~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 324 ESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHCc--CHHHHHHHHHHHHHCCC
Confidence 66654 67899999988887665
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.57 E-value=50 Score=26.71 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHh
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRKRD---VLSWNSMIVGYGVHGR--GDEAISFFKQMLMAGFHPDSI 292 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 292 (551)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4567888888899999999999887653 2344445555555332 445667777777766544443
No 288
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=47.54 E-value=64 Score=27.29 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCC--CH-------HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 343 LEKALEVINTSSPS--DP-------VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 343 ~~~A~~~~~~~~~~--~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
++.|+.+++. +.. +. .+--..+..|.+.|.+++|.+++++.+...+.+...-.-|..+-.
T Consensus 94 LESAl~v~~~-I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~ 162 (211)
T 3bqo_A 94 LESALMIWGS-IEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 162 (211)
T ss_dssp HHHHHHHHTT-SCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 4556666666 544 21 111234467999999999999999998887666554444444333
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.77 E-value=1.1e+02 Score=30.33 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH-------hHHH-HHHHHHHhcCChHHHHHHHHHHHHc
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV-------LSWN-SMIVGYGVHGRGDEAISFFKQMLMA 285 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 285 (551)
..++|.++..|...+.++.|..+..+..-|.. ..|. -+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56788889999999999999999998865522 1222 2345677889999999988887764
No 290
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=42.50 E-value=11 Score=29.83 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=18.8
Q ss_pred cccccceEEEecCCcccccCCCcCC
Q 048830 522 SIAYSRDLIVRDRVRYHHFRDGLCS 546 (551)
Q Consensus 522 s~~~~r~i~~~d~~~~h~f~~g~cs 546 (551)
..++..-..-+++-+||+|+++.|-
T Consensus 63 ~~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 63 YSIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp EECCTTCEEEEEETTEEEEECSSCE
T ss_pred eEEeCCcEEeccCCeeEEEEcCCEE
Confidence 4444455566899999999999874
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.74 E-value=1.3e+02 Score=25.58 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=8.3
Q ss_pred ccCChHHHHHHHHHHHHhC
Q 048830 101 RVKALNKCQELHGFVIRSG 119 (551)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~g 119 (551)
..|+.+....+++.+.+.|
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 3444444444444443333
No 292
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.60 E-value=1.5e+02 Score=24.55 Aligned_cols=151 Identities=10% Similarity=0.032 Sum_probs=77.4
Q ss_pred HHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 048830 43 LLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER 122 (551)
Q Consensus 43 ~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 122 (551)
.+++.+..+|...-...+..+.+.|... +...+.++... +|...-...+.++...++.+....+. .+. -.+
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l---~d~ 88 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALKD----EDAWVRRAAADALGQIGDERAVEPLI-KAL---KDE 88 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGGGHHHHH-HHT---TCS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHHHHHH-HHH---cCC
Confidence 3344444555555555555555555433 33333333321 45555555555555555543322222 222 245
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh
Q 048830 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202 (551)
Q Consensus 123 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 202 (551)
+..+....+.+..+.|+.+....+.+.+..++...-...+.++.+.+.. +++..+..+.. .++...-...+.++..
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGE 164 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 6666666666777666655555555555556665555556666666553 34444444433 2455555566666666
Q ss_pred cCCh
Q 048830 203 VGAL 206 (551)
Q Consensus 203 ~~~~ 206 (551)
.+..
T Consensus 165 ~~~~ 168 (201)
T 3ltj_A 165 IGGE 168 (201)
T ss_dssp HCSH
T ss_pred hCch
Confidence 6553
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.11 E-value=95 Score=26.57 Aligned_cols=85 Identities=8% Similarity=-0.010 Sum_probs=40.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChh---hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHH
Q 048830 60 IRAFAQSLSPLQAIFYYNHMLMASLSRPDTF---TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV--STNLMRGY 134 (551)
Q Consensus 60 i~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y 134 (551)
+...+..|+.+....+++.+...+.. ++.. -.+ .+...+..|+.+- .+.+++.|..++... ..+.+...
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQT-PLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCC-HHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHH
Confidence 34445567766666666655555433 3322 222 2333344555543 334445554433211 11233334
Q ss_pred HhCCCHHHHHHHhccC
Q 048830 135 AANGVIEAARSVFDNM 150 (551)
Q Consensus 135 ~~~g~~~~A~~~~~~m 150 (551)
+..|+.+-...+++..
T Consensus 87 ~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHTTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHcC
Confidence 4566666666665544
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.09 E-value=1.3e+02 Score=26.06 Aligned_cols=78 Identities=13% Similarity=-0.011 Sum_probs=53.2
Q ss_pred HHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc--CCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 344 EKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 344 ~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
+.+...|.. .+. |+......+..-... +.+..+|..+...+ -.-+..|...+..+...|++.+|.++|+.-
T Consensus 101 Erc~~~F~~-~~rYknD~RyLklWl~Ya~~~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 101 ERCTREFVR-NPLYKDDVRYLRIWMQYVNYI---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp HHHHHHTTT-CGGGTTCHHHHHHHHHHHTTC---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcc-cccccCCHHHHHHHHHHHHcc---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555 443 555444444333222 35667888887654 556778999999999999999999999887
Q ss_pred HhCCCcc
Q 048830 419 KSNGIKT 425 (551)
Q Consensus 419 ~~~g~~~ 425 (551)
.+++-.|
T Consensus 177 i~~~A~P 183 (223)
T 4aez_C 177 KRMKAKP 183 (223)
T ss_dssp HHHTCBS
T ss_pred HHcCCcc
Confidence 7766665
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.09 E-value=93 Score=24.24 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHh
Q 048830 159 NSIISCYTQASFHLEALKLYERM 181 (551)
Q Consensus 159 ~~li~~~~~~g~~~~A~~~~~~m 181 (551)
+.++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34455555555555555555554
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.76 E-value=3.2e+02 Score=29.70 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=40.7
Q ss_pred HHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 048830 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (551)
++..+...|..+-|.++..-++. +...--.+..+|...|++++|...|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66677788888888887777765 44433467788999999999999998764
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.63 E-value=64 Score=28.34 Aligned_cols=86 Identities=14% Similarity=0.036 Sum_probs=40.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--cCCCC----CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHH
Q 048830 263 IVGYGVHGRGDEAISFFKQMLM--AGFHP----DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336 (551)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 336 (551)
+..+..+.++++|.+++++... .+.++ +.......+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCCHHHHHHHHHH
Confidence 4445556666666666655443 12221 1112222222222222223333333333 21 3344445566677
Q ss_pred HhhcCCHHHHHHHHhh
Q 048830 337 YGRAGKLEKALEVINT 352 (551)
Q Consensus 337 ~~~~g~~~~A~~~~~~ 352 (551)
+.+.|+-++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 7788888888887754
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.29 E-value=1.6e+02 Score=23.69 Aligned_cols=54 Identities=7% Similarity=-0.009 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 048830 70 LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123 (551)
Q Consensus 70 ~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 123 (551)
.++.++|..|...|+..--+.-|......+-..|++.+|.+++..-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 346677777777666523334455666666666777777777777666655553
No 299
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.24 E-value=1.1e+02 Score=26.09 Aligned_cols=108 Identities=9% Similarity=-0.015 Sum_probs=53.3
Q ss_pred HHcCCCCChHHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhh---HHHHHHHHhccC
Q 048830 30 YAISVSSSLSYAQLLFNQIQNP---QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT---FTFTLKACERVK 103 (551)
Q Consensus 30 ~~~~~~g~~~~A~~lf~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~---~~~ll~~~~~~~ 103 (551)
.++. |+++....+++.-..+ +..- .+.+...+..|+.+ +++.+.+.+.. ++... -.+.+...+..|
T Consensus 16 A~~~--g~~~~~~~Ll~~g~~~~~~~~~g-~t~L~~A~~~~~~~----~v~~Ll~~~~~-~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 16 ATQY--GIYERCRELVEAGYDVRQPDKEN-VTLLHWAAINNRID----LVKYYISKGAI-VDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHT--TCHHHHHHHHHTTCCTTCCCTTS-CCHHHHHHHTTCHH----HHHHHHHTTCC-TTCCBTTTTBCHHHHHHHHT
T ss_pred HHHc--CChHHHHHHHHcCCCcCCCCCCC-CCHHHHHHHhCCHH----HHHHHHHcCCc-chhhcCCcCCChhHHHHHcC
Confidence 4456 8888888888754332 2222 23445556667654 34444455543 32211 112333444556
Q ss_pred ChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCCHHHHHHHhcc
Q 048830 104 ALNKCQELHGFVIRSGYERCVV--VSTNLMRGYAANGVIEAARSVFDN 149 (551)
Q Consensus 104 ~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~ 149 (551)
+.+-+ +.+++.|..++.. ...+.+...++.|+.+-+..+++.
T Consensus 88 ~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 88 HLSMV----VQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp CHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHH----HHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 65443 4444555444321 111234445566777766666654
No 300
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=36.97 E-value=2.2e+02 Score=25.10 Aligned_cols=49 Identities=8% Similarity=-0.067 Sum_probs=21.7
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC
Q 048830 50 NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103 (551)
Q Consensus 50 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~ 103 (551)
.+|...-...+.++.+.|. ..++..+..+... +|...-...+.++...+
T Consensus 34 ~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d----~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGG-QDAVRLAIEFCSD----KNYIRRDIGAFILGQIK 82 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC----SSHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHccCC-chHHHHHHHHHcC----CCHHHHHHHHHHHHHhc
Confidence 3444433334444444443 3344444444432 44444444445555544
No 301
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=36.29 E-value=2.8e+02 Score=26.07 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHh
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRKRD---VLSWNSMIVGYGVHGR--GDEAISFFKQMLMAGFHPDSI 292 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 292 (551)
.+.++.=|...|+.++|.+.++++..|. .....++..++-+.++ .+....++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4666777777777777777777776653 2334444444444332 344566666666665544443
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.68 E-value=3.4e+02 Score=29.55 Aligned_cols=47 Identities=4% Similarity=-0.298 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhh-cCCCcc----hHHHHHHHhhhc
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQL-EAASAG----DYVLLATIYACT 405 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~----~~~~l~~~~~~~ 405 (551)
..|..++..+-.++-++.+..+.+.+++. .++++. .+..+..+++..
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 36667777788888888888888888864 344443 344444444433
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=35.32 E-value=3e+02 Score=26.88 Aligned_cols=136 Identities=16% Similarity=0.088 Sum_probs=74.2
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHH
Q 048830 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFK 280 (551)
Q Consensus 204 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (551)
.+.+.|.++ +.+.|++-....|.--.+.+...|++++|.++-...+. ++..|.+.+-..=...|+..--+.+|.
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 444444433 33455555555566666777788888888888776654 455555554444444566666667777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 281 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
.+.+.| ..+..--.-+++.-...|+.+-..+++.+= .+..+.+ |.|+. +..+..-|..+|.+
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~----KL~~SEe----LGDlv-k~~d~~LAl~IY~~ 481 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKED----KLECSEE----LGDLV-KSVDPTLALSVYLR 481 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHT----CSCCCHH----HHHHH-HHHCSHHHHHHHHH
T ss_pred HHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcC----CccccHH----hHhhh-hhcCHHHHHHHHHH
Confidence 777665 344443344455555556655554444321 3444432 33322 33345555555544
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.91 E-value=1.2e+02 Score=24.34 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHh
Q 048830 159 NSIISCYTQASFHLEALKLYERM 181 (551)
Q Consensus 159 ~~li~~~~~~g~~~~A~~~~~~m 181 (551)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 44555555555666665555555
No 305
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.97 E-value=65 Score=23.63 Aligned_cols=38 Identities=16% Similarity=0.050 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHH
Q 048830 239 GNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276 (551)
Q Consensus 239 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 276 (551)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788899999998888889999999887777766554
No 306
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.79 E-value=2.3e+02 Score=26.11 Aligned_cols=19 Identities=11% Similarity=-0.162 Sum_probs=11.6
Q ss_pred hHHHhhcCCHHHHHHHHhh
Q 048830 334 VDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~ 352 (551)
+...+..|+.+-+..+++.
T Consensus 177 L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3344566777777666664
No 307
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.79 E-value=2e+02 Score=27.47 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=52.8
Q ss_pred HHHHHHcCCCCChHHHHHHHhcCCCCChhh--HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCCh---hhHHHHHHHHh
Q 048830 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQA--WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT---FTFTFTLKACE 100 (551)
Q Consensus 26 li~~~~~~~~g~~~~A~~lf~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~---~~~~~ll~~~~ 100 (551)
.+..-+.. |+++-+..+++.-..++... ..+.+...+..|+.+-+.-++ +.|.. ++. ...+ .+...+
T Consensus 17 ~L~~Aa~~--g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~-~~~~~~~g~t-~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFM--GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAK-VNAKAKDDQT-PLHCAA 88 (437)
T ss_dssp HHHHHHHH--TCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCC-SSCCCTTSCC-HHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCC-CCCCCCCCCC-HHHHHH
Confidence 34445566 88888888877654443221 123444455566654433333 33432 322 2222 333344
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCCHHHHHHHhccC
Q 048830 101 RVKALNKCQELHGFVIRSGYERCVVV--STNLMRGYAANGVIEAARSVFDNM 150 (551)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~m 150 (551)
..|+.+- .+.+++.|..++... ..+.+...++.|+.+....+++.-
T Consensus 89 ~~g~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 89 RIGHTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp HHTCHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HCCCHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 5566543 333444554433211 112333445556666666666543
No 308
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.20 E-value=2.5e+02 Score=23.77 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=38.9
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHhCC
Q 048830 158 WNSIISCYTQ---ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-----LNMGIFLHRIACEMGF 221 (551)
Q Consensus 158 ~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~ 221 (551)
..-+|+++.| ..+++.|+-.+.+|.+.| .|....-..++-+.-..|. +..|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3446666655 478999999999999998 6665555555555544442 2334444444444554
No 309
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.24 E-value=2e+02 Score=25.59 Aligned_cols=146 Identities=8% Similarity=0.029 Sum_probs=71.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHh---hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCcc---chhhhhHHHhhc
Q 048830 267 GVHGRGDEAISFFKQMLMAGFHPDSI---TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIK---HYGCLVDLYGRA 340 (551)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~ 340 (551)
+..|+.+- ++.+.+.|..|+.. -.+.|..+ +..|..+-+..+++. |..++.. -+...+...+..
T Consensus 70 ~~~g~~~~----v~~Ll~~ga~~~~~d~~g~t~L~~A-~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~ 139 (285)
T 3kea_A 70 ATLEDTKI----VKILLFSGLDDSQFDDKGNTALYYA-VDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVML 139 (285)
T ss_dssp TTSSSCHH----HHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHT
T ss_pred HHcCCHHH----HHHHHHCCCCCCCcCCCCCcHHHHH-HHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHc
Confidence 44555443 33334445544432 22233333 345666554444332 4444322 223455556677
Q ss_pred CCHHHHHHHHhhcCCC-CH-HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 341 GKLEKALEVINTSSPS-DP-VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 341 g~~~~A~~~~~~~~~~-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
|+.+-+..+++..... +. .-++. +......|+.+.+..+++.-...+..+..............|+. ++.+.+
T Consensus 140 ~~~~~v~~Ll~~g~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~L 214 (285)
T 3kea_A 140 NDVSIVSYFLSEIPSTFDLAILLSC-IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQAL 214 (285)
T ss_dssp TCHHHHHHHHTTSCTTCCCSTHHHH-HHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHH
T ss_pred CCHHHHHHHHhCCCccccccCCccH-HHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHH
Confidence 8888777777763322 33 33333 44445678888887777775555433322211111222334443 344555
Q ss_pred HhCCCccCC
Q 048830 419 KSNGIKTTP 427 (551)
Q Consensus 419 ~~~g~~~~~ 427 (551)
.+.|..+..
T Consensus 215 l~~gad~~~ 223 (285)
T 3kea_A 215 FKYDINIYS 223 (285)
T ss_dssp TTSCBCSTT
T ss_pred HHcCCCCCC
Confidence 666766543
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.22 E-value=2e+02 Score=25.12 Aligned_cols=21 Identities=10% Similarity=-0.084 Sum_probs=12.1
Q ss_pred HHHHHhcCChHHHHHHHHHhh
Q 048830 162 ISCYTQASFHLEALKLYERMR 182 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~ 182 (551)
+..+....++++|+.++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 445555666666666665543
No 311
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.10 E-value=2e+02 Score=23.57 Aligned_cols=14 Identities=0% Similarity=0.041 Sum_probs=10.0
Q ss_pred CChHHHHHHHhcCC
Q 048830 36 SSLSYAQLLFNQIQ 49 (551)
Q Consensus 36 g~~~~A~~lf~~~~ 49 (551)
|+.+....++..-.
T Consensus 16 g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 16 RDTKKVKEILQDTT 29 (201)
T ss_dssp TCHHHHHHHHTCTT
T ss_pred ccHHHHHHHHHcCC
Confidence 77888777776543
No 312
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.32 E-value=59 Score=23.88 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHH
Q 048830 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175 (551)
Q Consensus 138 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 175 (551)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767665553
No 313
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.22 E-value=1.4e+02 Score=24.61 Aligned_cols=156 Identities=13% Similarity=-0.007 Sum_probs=68.3
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCC
Q 048830 62 AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV--STNLMRGYAANGV 139 (551)
Q Consensus 62 ~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~ 139 (551)
..+..|+.+....++..-.. .+...|..-.+.+. ..+..|+.+- .+.+++.|..++... ..+.+...+..|+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~-~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTY-QVDEVDTEGNTPLN-IAVHNNDIEI----AKALIDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTC-CTTCCCTTSCCHHH-HHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHhccHHHHHHHHHcCCC-CCCCCCCCCCCHHH-HHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 34566777666655543210 11112333333343 3445566544 444455565544321 1223444567788
Q ss_pred HHHHHHHhccCC-C---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 140 IEAARSVFDNMP-E---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215 (551)
Q Consensus 140 ~~~A~~~~~~m~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 215 (551)
.+-+..+++.-. . ++..-++.|. ..+..|+.+-+..+++.-...--..|..-.+.+..++........-.++.+.
T Consensus 85 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 85 TEILAYMLKHATPDLNKHNRYGGNALI-PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp HHHHHHHHHHSCCCTTCCCTTSCCSHH-HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred HHHHHHHHhccCcccccccCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 888877774432 1 2222222222 2344566554444443320100012222223333333322223333556666
Q ss_pred HHHhCCCCc
Q 048830 216 ACEMGFVES 224 (551)
Q Consensus 216 ~~~~g~~~~ 224 (551)
+++.|..++
T Consensus 164 Ll~~ga~~~ 172 (201)
T 3hra_A 164 LMENGADQS 172 (201)
T ss_dssp HHHTTCCTT
T ss_pred HHHCCCCCC
Confidence 666665554
No 314
>2lix_A IMKTX104, potassium channel toxins; disulfide bond stabilized structure; NMR {Lychas mucronatus}
Probab=33.69 E-value=13 Score=18.92 Aligned_cols=6 Identities=67% Similarity=1.791 Sum_probs=2.4
Q ss_pred CCcCCC
Q 048830 542 DGLCSC 547 (551)
Q Consensus 542 ~g~csc 547 (551)
||+|-|
T Consensus 21 dgkckc 26 (27)
T 2lix_A 21 DGKCKC 26 (27)
Confidence 344433
No 315
>1d0d_A TAP, anticoagulant protein; factor XA inhibitor, kunitz inhibitor, blood clotting inhibitor; 1.62A {Ornithodoros moubata} SCOP: g.8.1.2 PDB: 1kig_I 1tap_A 1tcp_A
Probab=27.47 E-value=6.2 Score=24.65 Aligned_cols=13 Identities=38% Similarity=1.178 Sum_probs=10.5
Q ss_pred ccCCCcCCCCCCC
Q 048830 539 HFRDGLCSCGDYW 551 (551)
Q Consensus 539 ~f~~g~csc~~~w 551 (551)
.|.+||=||.-||
T Consensus 25 ~f~~~k~~c~~fw 37 (60)
T 1d0d_A 25 YFRNGKGGCDSFW 37 (60)
T ss_dssp EEECSSSSEEEEE
T ss_pred eccCCCCCCCcce
Confidence 5888888888777
No 316
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.38 E-value=3.6e+02 Score=24.63 Aligned_cols=25 Identities=8% Similarity=0.256 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCHHHHHHHhccCCCC
Q 048830 129 NLMRGYAANGVIEAARSVFDNMPER 153 (551)
Q Consensus 129 ~li~~y~~~g~~~~A~~~~~~m~~~ 153 (551)
.++.-|...|+.++|...++++..|
T Consensus 8 ~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 8 PIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 3455555555566665555555443
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.99 E-value=1.5e+02 Score=23.39 Aligned_cols=38 Identities=11% Similarity=-0.194 Sum_probs=16.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048830 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240 (551)
Q Consensus 203 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 240 (551)
.+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 33344455555555444433333333333444444443
No 318
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=26.95 E-value=1.6e+02 Score=29.26 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=24.0
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHH
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 413 (551)
.+-....+.|...|.++..+.|.+...|+.|+-+....|+.-+|.-
T Consensus 162 ~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y 207 (497)
T 1ya0_A 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF 207 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHH
Confidence 3334444555555555555555555555555555555555444433
No 319
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.84 E-value=2.7e+02 Score=23.04 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=47.3
Q ss_pred HhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--------------CH-hhHHHHH
Q 048830 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH--P--------------DS-ITFLGLL 298 (551)
Q Consensus 236 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--------------~~-~t~~~ll 298 (551)
.-.|.+..+.-++.....-...-|.. -+|-...++..|+..++.+.+..+. | |. ..++.+.
T Consensus 44 yyngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a 121 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG 121 (242)
T ss_dssp HHTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence 34566666665555443222222332 2455667777777777777644333 1 22 2355666
Q ss_pred HHHhccCCHHHHHHHHHHhH
Q 048830 299 CGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~ 318 (551)
..|.+.|+.++|+..+..-.
T Consensus 122 ~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 122 DLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHhhhHhhhhc
Confidence 67788888888888877554
No 320
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=26.78 E-value=3.2e+02 Score=23.91 Aligned_cols=49 Identities=4% Similarity=-0.115 Sum_probs=23.7
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCC
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS 68 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~ 68 (551)
+|..+-..-+..+++. |..+....+...+..++...-...+.++.+.|.
T Consensus 35 ~~~~vr~~A~~~L~~~--~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 35 HNSLKRISSARVLQLR--GGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp SSHHHHHHHHHHHHHH--CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHcc--CCchHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 4444444455555555 544333334444445555444445555555553
No 321
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.72 E-value=2.7e+02 Score=23.03 Aligned_cols=52 Identities=19% Similarity=0.147 Sum_probs=34.9
Q ss_pred HHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcc
Q 048830 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVG 187 (551)
Q Consensus 134 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 187 (551)
+.-.|.+..+.-++.....-+..-|-. -+|-+.+++..|+..+..+.+..+.
T Consensus 43 LyyngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp HHHTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred hhhcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345788888887776664333333433 3567788999999999888865554
No 322
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.16 E-value=1.6e+02 Score=23.27 Aligned_cols=60 Identities=10% Similarity=0.003 Sum_probs=29.7
Q ss_pred HHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 048830 79 MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140 (551)
Q Consensus 79 m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 140 (551)
+.+.|.+ ++.. =..++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 13 l~~~g~r-~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVR-ITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCC-CCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCC-CCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4445554 3332 2233444444445556666666666555444444444455556666543
No 323
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.36 E-value=1.5e+02 Score=26.41 Aligned_cols=16 Identities=6% Similarity=0.100 Sum_probs=7.7
Q ss_pred HHhcCCHHHHHHHHHh
Q 048830 235 YAKCGNLDSAFCVFSR 250 (551)
Q Consensus 235 y~~~g~~~~A~~~~~~ 250 (551)
.++.|+.+-+.-+++.
T Consensus 202 A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 202 AIDNKDIEMLQALFKY 217 (285)
T ss_dssp HHHHTCHHHHHHHTTS
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3445555554444443
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.35 E-value=2.1e+02 Score=22.74 Aligned_cols=61 Identities=7% Similarity=-0.030 Sum_probs=34.8
Q ss_pred HHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 048830 78 HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI 140 (551)
Q Consensus 78 ~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 140 (551)
.+.+.|.+ ++ ..=..++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 17 ~l~~~g~r-~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLK-NS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC---CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCC-CC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34555654 33 223345555555556667778888877766555555544456667777654
No 325
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.93 E-value=3.1e+02 Score=23.13 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=32.5
Q ss_pred HHHHHHHHHhc---CChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcC
Q 048830 158 WNSIISCYTQA---SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204 (551)
Q Consensus 158 ~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 204 (551)
..-+|+++.|+ .+++.|+-.+.+|++.|-.|....-..++-+.-..|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34466776554 789999999999999887776665555555554433
No 326
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.64 E-value=69 Score=28.08 Aligned_cols=54 Identities=13% Similarity=-0.130 Sum_probs=29.1
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCChh-------hHHHHHHHHh--ccCChHHHHHHHHHH
Q 048830 61 RAFAQSLSPLQAIFYYNHMLMASLSRPDTF-------TFTFTLKACE--RVKALNKCQELHGFV 115 (551)
Q Consensus 61 ~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~ 115 (551)
...++.|+.+....+++.+...+.. ++.. -.+.|..|.. +.|+.+-+..+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3445567777766666666665544 4422 2233443332 456666666665554
No 327
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.43 E-value=1.2e+02 Score=28.23 Aligned_cols=15 Identities=7% Similarity=0.011 Sum_probs=7.2
Q ss_pred HhcCCHHHHHHHHHh
Q 048830 236 AKCGNLDSAFCVFSR 250 (551)
Q Consensus 236 ~~~g~~~~A~~~~~~ 250 (551)
+..|+.+-+..+++.
T Consensus 181 ~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 181 MEFRNREALDLMMDT 195 (364)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 344555555444443
No 328
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.01 E-value=3.5e+02 Score=23.35 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 048830 70 LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER 122 (551)
Q Consensus 70 ~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 122 (551)
+.+.++|..|...|+..--..-|......+-..|++.+|..+|..-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34555666666655542223344555555555566666666666655555444
No 329
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.67 E-value=2.8e+02 Score=25.76 Aligned_cols=140 Identities=8% Similarity=-0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCHHHHHHHhccCCCC---ChhHHHHHHHHHHh-cCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhc
Q 048830 128 TNLMRGYAANGVIEAARSVFDNMPER---DLVSWNSIISCYTQ-ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203 (551)
Q Consensus 128 ~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 203 (551)
..++.=|...|+.++|.+.++++..| .......+..++-+ ....+.+..++..+.+.|+-+.......+-..+...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Q ss_pred CC--------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHH
Q 048830 204 GA--------LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275 (551)
Q Consensus 204 ~~--------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 275 (551)
.+ +.....+...+...|.-|-....+.+...+...|........ .+..+.+....+.+
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~--------------vl~~l~~~~g~~~l 160 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLE--------------ILGLLCKSMGPKKV 160 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHH--------------HHHHHHHHHCHHHH
T ss_pred hHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHH--------------HHHHHHHHcCHHHH
Q ss_pred HHHHHH
Q 048830 276 ISFFKQ 281 (551)
Q Consensus 276 ~~~~~~ 281 (551)
.++|++
T Consensus 161 ~~~~~~ 166 (339)
T 1ug3_A 161 GTLWRE 166 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 330
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.92 E-value=2.5e+02 Score=21.76 Aligned_cols=44 Identities=9% Similarity=0.231 Sum_probs=20.3
Q ss_pred HHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 96 LKACERVK-ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 96 l~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
+..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-
T Consensus 24 l~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 24 LQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 33343333 444556666665555433444433334444555444
No 331
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.68 E-value=2.4e+02 Score=22.40 Aligned_cols=45 Identities=4% Similarity=-0.068 Sum_probs=23.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCC
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 306 (551)
++..+...+..-.|.++++.+.+.+...+..|...-|..+...|.
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 344444444455566666666655544555555555555554443
No 332
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.42 E-value=1.4e+02 Score=20.89 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=23.5
Q ss_pred HHHhcCC--CCChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 048830 43 LLFNQIQ--NPQTQAWNSLIRAFAQSLSPLQAIFYYNHM 79 (551)
Q Consensus 43 ~lf~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 79 (551)
.++++++ .|++.||+-+...+-+..-..+++.+..++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4666666 578888888777655554455555555444
No 333
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=22.28 E-value=27 Score=26.98 Aligned_cols=27 Identities=7% Similarity=0.106 Sum_probs=20.1
Q ss_pred cccccceEEEecCCcccccCCCcCCCC
Q 048830 522 SIAYSRDLIVRDRVRYHHFRDGLCSCG 548 (551)
Q Consensus 522 s~~~~r~i~~~d~~~~h~f~~g~csc~ 548 (551)
+.++......+.+--||||+|+.|+|.
T Consensus 59 ~~i~~~l~y~~a~p~FhqW~d~~~~~~ 85 (120)
T 1ddw_A 59 STITPNMTFTKTSQKFGQWADSRANTV 85 (120)
T ss_dssp EECCTTCCCEECSSSEEEEEETTTTEE
T ss_pred CEecCCcEEeeCCccccEEEcCCCcEE
Confidence 555555556678889999999997663
No 334
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.60 E-value=1.9e+02 Score=23.46 Aligned_cols=69 Identities=6% Similarity=-0.043 Sum_probs=42.7
Q ss_pred hHHHHHHHH-HHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhCCCH
Q 048830 70 LQAIFYYNH-MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRS--GYERCVVVSTNLMRGYAANGVI 140 (551)
Q Consensus 70 ~~A~~l~~~-m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~ 140 (551)
+.+++-+.+ +.+.|.+ ++. .-..++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r-~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLK-YTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCC-CCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCC-CCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444444 3445665 443 3345666666767777888888888877 5555555544456777777754
No 335
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.44 E-value=3.2e+02 Score=22.95 Aligned_cols=19 Identities=5% Similarity=-0.006 Sum_probs=11.5
Q ss_pred hhhcCChhHHHHHHHHHHh
Q 048830 402 YACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 402 ~~~~g~~~~a~~~~~~m~~ 420 (551)
....|+.+.+.++.+.+.+
T Consensus 217 A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4455666666666666654
No 336
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.23 E-value=1.4e+02 Score=29.79 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC-------cchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS-------AGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
....+|.+++.|...+.++.|..+..+.. .|.+ ...+..++.++.-.+++.+|.+.+.....
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35677777788888888888888777764 3332 22345678889999999999888877654
No 337
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.83 E-value=3.9e+02 Score=22.78 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhc---CChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHhCC
Q 048830 156 VSWNSIISCYTQA---SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-----LNMGIFLHRIACEMGF 221 (551)
Q Consensus 156 ~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~ 221 (551)
....-+|+++.|+ .+++.|+-.+.+|.+.|-.|....-..++-+.-..|. +..|...++.....|.
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3445567777654 8899999999999999877776666666655544442 2344444444444453
No 338
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.67 E-value=1.7e+02 Score=22.21 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=13.4
Q ss_pred cCChhHHHHHHHHHHh
Q 048830 405 TKDEEGVARTRKLIKS 420 (551)
Q Consensus 405 ~g~~~~a~~~~~~m~~ 420 (551)
-..|++|.++..+|+.
T Consensus 67 g~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 67 GPGWESARQMQQKMKE 82 (116)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH
Confidence 4469999999999975
No 339
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.55 E-value=97 Score=20.35 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHcCCCCCChhhHHHHHHHH
Q 048830 69 PLQAIFYYNHMLMASLSRPDTFTFTFTLKAC 99 (551)
Q Consensus 69 ~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~ 99 (551)
.++|.+.|.+|++..-. +..-||...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V-~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQV-DSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTC-CSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCC-CCCCcHHHHHHHh
Confidence 46788888888876655 6777888888877
No 340
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.53 E-value=3.9e+02 Score=25.27 Aligned_cols=82 Identities=11% Similarity=0.056 Sum_probs=36.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChhh--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHH
Q 048830 60 IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT--FTFTLKACERVKALNKCQELHGFVIRSGYERCVV--VSTNLMRGYA 135 (551)
Q Consensus 60 i~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~ 135 (551)
+...+..|+.+- ++.+.+.|.. |+... ..+.+...+..|+.+-+..+ ++.|..++.. ...+.+...+
T Consensus 18 L~~Aa~~g~~~~----v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 18 LHVASFMGHLPI----VKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHTCHHH----HHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHCCCHHH----HHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHH
Confidence 344445555543 3333444543 44321 12234444455665544333 3444433221 1112334445
Q ss_pred hCCCHHHHHHHhccC
Q 048830 136 ANGVIEAARSVFDNM 150 (551)
Q Consensus 136 ~~g~~~~A~~~~~~m 150 (551)
+.|+.+-+.-+++.-
T Consensus 89 ~~g~~~~v~~Ll~~g 103 (437)
T 1n11_A 89 RIGHTNMVKLLLENN 103 (437)
T ss_dssp HHTCHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHhCC
Confidence 566666666666543
No 341
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.40 E-value=1.6e+02 Score=22.61 Aligned_cols=42 Identities=14% Similarity=-0.028 Sum_probs=27.3
Q ss_pred HHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218 (551)
Q Consensus 177 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (551)
+|+.+....+.|+...-..-+..+...++++.|..++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666656555444445555677788888888877765
No 342
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.24 E-value=5.1e+02 Score=23.83 Aligned_cols=51 Identities=8% Similarity=0.072 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
-..+..+-|..+.+++|+..|..+.+++++++|..+ ..++|.++.....+.
T Consensus 206 ~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 206 RTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 445667778888999999999999999999998522 345677777766544
Done!