Query 048831
Match_columns 1051
No_of_seqs 701 out of 5228
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 13:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4E-102 8E-107 989.9 85.2 897 1-995 159-1101(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-59 3.6E-64 564.4 30.7 527 28-652 161-730 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-36 2.6E-41 333.9 15.4 270 30-305 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 2.7E-30 5.8E-35 332.0 27.6 389 390-788 85-486 (968)
5 PLN00113 leucine-rich repeat r 100.0 3E-29 6.5E-34 322.2 26.8 403 390-794 156-588 (968)
6 KOG0444 Cytoskeletal regulator 99.9 1.9E-28 4.1E-33 264.4 -5.7 358 397-770 6-376 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 2.6E-28 5.7E-33 263.3 -5.4 333 389-764 46-394 (1255)
8 KOG4194 Membrane glycoprotein 99.9 5.2E-25 1.1E-29 237.1 6.1 350 401-784 81-446 (873)
9 PLN03210 Resistant to P. syrin 99.9 1.4E-22 3E-27 259.9 26.7 333 418-794 557-910 (1153)
10 KOG4194 Membrane glycoprotein 99.9 1.1E-24 2.5E-29 234.5 6.2 353 401-788 55-427 (873)
11 KOG0472 Leucine-rich repeat pr 99.9 1.1E-26 2.4E-31 239.6 -11.6 370 399-788 46-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.9 8.3E-26 1.8E-30 233.2 -12.7 350 390-768 83-540 (565)
13 KOG0618 Serine/threonine phosp 99.8 1.2E-21 2.6E-26 223.1 -4.5 383 396-789 43-488 (1081)
14 KOG0618 Serine/threonine phosp 99.7 2.9E-20 6.2E-25 212.0 -5.8 343 420-773 46-423 (1081)
15 PRK15387 E3 ubiquitin-protein 99.7 2.5E-16 5.5E-21 186.9 18.7 256 420-768 202-457 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 2.4E-15 5.1E-20 178.7 17.4 215 401-655 204-418 (788)
17 PRK15370 E3 ubiquitin-protein 99.6 8.4E-16 1.8E-20 184.0 11.1 248 400-721 180-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.6 1.2E-15 2.5E-20 182.8 12.0 248 418-746 177-428 (754)
19 KOG0617 Ras suppressor protein 99.5 2.6E-16 5.7E-21 144.5 -4.2 162 543-754 32-194 (264)
20 KOG0617 Ras suppressor protein 99.5 5.3E-16 1.2E-20 142.6 -6.5 169 432-636 24-193 (264)
21 KOG4237 Extracellular matrix p 99.5 4.1E-15 9E-20 154.7 -1.7 244 406-650 54-357 (498)
22 cd00116 LRR_RI Leucine-rich re 99.4 1.8E-14 3.9E-19 161.1 -0.8 263 484-767 20-318 (319)
23 PRK04841 transcriptional regul 99.4 1.9E-11 4E-16 157.0 23.2 298 19-342 8-335 (903)
24 KOG4237 Extracellular matrix p 99.3 8.7E-14 1.9E-18 145.0 -2.2 146 424-602 51-199 (498)
25 cd00116 LRR_RI Leucine-rich re 99.3 2.2E-13 4.8E-18 152.3 0.9 240 505-767 17-289 (319)
26 KOG4658 Apoptotic ATPase [Sign 99.3 2.4E-12 5.3E-17 156.9 6.7 225 420-677 546-785 (889)
27 TIGR00635 ruvB Holliday juncti 99.2 2.1E-10 4.4E-15 126.8 15.5 271 24-323 3-292 (305)
28 PRK00080 ruvB Holliday junctio 99.2 5.8E-11 1.3E-15 131.8 10.9 281 20-323 20-313 (328)
29 COG3899 Predicted ATPase [Gene 99.2 2E-10 4.4E-15 141.0 15.4 329 26-367 1-406 (849)
30 PRK00411 cdc6 cell division co 99.2 9.6E-10 2.1E-14 126.4 20.0 252 19-282 24-306 (394)
31 PF01637 Arch_ATPase: Archaeal 99.2 1.7E-10 3.6E-15 122.6 11.7 199 27-231 1-233 (234)
32 TIGR02928 orc1/cdc6 family rep 99.1 1E-08 2.2E-13 116.6 22.2 253 19-282 9-298 (365)
33 PF05729 NACHT: NACHT domain 99.0 2.7E-09 5.8E-14 106.5 12.5 145 49-201 1-163 (166)
34 TIGR03015 pepcterm_ATPase puta 99.0 1.7E-08 3.7E-13 109.5 19.6 180 48-236 43-242 (269)
35 KOG0532 Leucine-rich repeat (L 99.0 2E-11 4.3E-16 133.3 -4.4 211 548-789 79-292 (722)
36 KOG0532 Leucine-rich repeat (L 98.9 2.9E-11 6.3E-16 132.1 -5.0 203 555-787 60-270 (722)
37 KOG3207 Beta-tubulin folding c 98.9 2.3E-10 4.9E-15 121.7 0.5 183 564-767 142-337 (505)
38 COG2256 MGS1 ATPase related to 98.9 9.1E-09 2E-13 109.3 11.3 177 19-227 18-207 (436)
39 KOG1259 Nischarin, modulator o 98.9 3.3E-10 7.1E-15 114.1 -0.2 134 611-773 280-415 (490)
40 PRK06893 DNA replication initi 98.8 4.1E-08 8.9E-13 102.7 14.6 180 19-234 10-205 (229)
41 COG2909 MalT ATP-dependent tra 98.8 1E-07 2.3E-12 110.5 18.6 299 19-342 13-341 (894)
42 COG4886 Leucine-rich repeat (L 98.8 6.3E-09 1.4E-13 119.8 8.1 197 548-773 97-294 (394)
43 KOG3207 Beta-tubulin folding c 98.8 1.5E-09 3.3E-14 115.5 0.5 190 541-746 143-339 (505)
44 COG4886 Leucine-rich repeat (L 98.7 1.9E-08 4.1E-13 115.8 7.3 194 402-608 97-294 (394)
45 PF05496 RuvB_N: Holliday junc 98.7 4.8E-07 1E-11 90.3 15.5 183 19-235 18-224 (233)
46 COG3903 Predicted ATPase [Gene 98.7 1.8E-08 4E-13 108.0 5.7 282 46-341 12-316 (414)
47 PRK12402 replication factor C 98.7 5.1E-07 1.1E-11 101.6 16.9 205 20-231 10-225 (337)
48 PRK13342 recombination factor 98.6 4.7E-07 1E-11 103.8 16.4 182 20-234 7-198 (413)
49 PRK14961 DNA polymerase III su 98.6 1.6E-06 3.4E-11 97.6 19.9 195 20-229 11-217 (363)
50 KOG1259 Nischarin, modulator o 98.6 8.9E-09 1.9E-13 103.9 1.1 214 508-750 179-416 (490)
51 TIGR03420 DnaA_homol_Hda DnaA 98.6 1.1E-06 2.5E-11 92.5 16.8 177 22-235 12-204 (226)
52 PTZ00112 origin recognition co 98.6 8.8E-07 1.9E-11 103.6 16.8 214 19-236 749-986 (1164)
53 PRK14963 DNA polymerase III su 98.6 7.7E-07 1.7E-11 103.1 15.8 196 20-229 9-214 (504)
54 PRK07471 DNA polymerase III su 98.6 5.5E-06 1.2E-10 92.2 21.6 204 20-233 14-239 (365)
55 PF14580 LRR_9: Leucine-rich r 98.5 4.3E-08 9.3E-13 96.1 3.6 18 729-746 109-126 (175)
56 PRK00440 rfc replication facto 98.5 1.5E-06 3.2E-11 97.0 16.4 185 20-229 12-200 (319)
57 PLN03025 replication factor C 98.5 1.2E-06 2.5E-11 97.1 14.9 186 20-229 8-197 (319)
58 PRK07003 DNA polymerase III su 98.5 3.5E-06 7.7E-11 98.5 19.0 202 20-234 11-223 (830)
59 PRK04195 replication factor C 98.5 2E-06 4.4E-11 100.6 17.3 185 20-232 9-202 (482)
60 PRK14956 DNA polymerase III su 98.5 9.4E-07 2E-11 99.5 13.4 195 20-227 13-217 (484)
61 KOG1909 Ran GTPase-activating 98.5 5.5E-09 1.2E-13 108.5 -4.6 137 613-767 155-309 (382)
62 PRK14949 DNA polymerase III su 98.5 3.1E-06 6.8E-11 101.0 17.4 202 20-232 11-221 (944)
63 PRK14960 DNA polymerase III su 98.5 1.6E-06 3.4E-11 100.4 14.4 197 20-229 10-216 (702)
64 TIGR01242 26Sp45 26S proteasom 98.5 1.3E-06 2.8E-11 98.6 12.8 175 22-226 119-328 (364)
65 PRK15386 type III secretion pr 98.4 7.8E-07 1.7E-11 97.7 10.3 74 566-650 50-123 (426)
66 KOG4341 F-box protein containi 98.4 8E-09 1.7E-13 109.5 -5.0 277 465-789 139-438 (483)
67 PRK14957 DNA polymerase III su 98.4 1E-05 2.2E-10 93.9 19.7 201 20-233 11-222 (546)
68 PRK12323 DNA polymerase III su 98.4 3E-06 6.5E-11 97.8 15.0 197 20-230 11-223 (700)
69 KOG2028 ATPase related to the 98.4 1.1E-06 2.3E-11 91.6 10.1 180 19-226 132-330 (554)
70 PRK08727 hypothetical protein; 98.4 7.1E-06 1.5E-10 86.1 16.6 172 23-229 17-201 (233)
71 PF13173 AAA_14: AAA domain 98.4 6.9E-07 1.5E-11 84.3 8.1 122 48-193 2-127 (128)
72 PF13191 AAA_16: AAA ATPase do 98.4 3.4E-07 7.3E-12 93.1 6.1 50 26-75 1-51 (185)
73 PRK14962 DNA polymerase III su 98.4 9.5E-06 2.1E-10 93.3 18.6 200 20-235 9-222 (472)
74 PRK05564 DNA polymerase III su 98.4 9.2E-06 2E-10 89.7 17.5 180 24-232 3-190 (313)
75 PRK08691 DNA polymerase III su 98.4 1.8E-06 3.9E-11 101.0 11.8 197 20-230 11-218 (709)
76 TIGR02397 dnaX_nterm DNA polym 98.4 8.5E-06 1.8E-10 92.4 17.2 186 20-233 9-219 (355)
77 PRK09112 DNA polymerase III su 98.4 9.2E-06 2E-10 89.9 16.8 200 19-233 17-241 (351)
78 PRK08084 DNA replication initi 98.4 1.1E-05 2.4E-10 84.7 16.7 171 25-232 22-209 (235)
79 PRK06645 DNA polymerase III su 98.4 4.7E-06 1E-10 96.1 14.7 193 20-228 16-225 (507)
80 PRK08903 DnaA regulatory inact 98.3 7.5E-06 1.6E-10 86.1 14.7 180 19-236 12-203 (227)
81 PF14580 LRR_9: Leucine-rich r 98.3 3.6E-07 7.8E-12 89.6 4.3 124 396-519 17-148 (175)
82 cd00009 AAA The AAA+ (ATPases 98.3 4.6E-06 9.9E-11 81.1 12.2 123 28-170 1-131 (151)
83 PTZ00202 tuzin; Provisional 98.3 4.7E-06 1E-10 90.6 12.9 164 19-200 256-433 (550)
84 KOG4341 F-box protein containi 98.3 1.7E-08 3.7E-13 107.1 -5.5 260 460-743 160-436 (483)
85 PRK14951 DNA polymerase III su 98.3 2.5E-05 5.5E-10 91.9 19.6 197 20-230 11-223 (618)
86 PRK05642 DNA replication initi 98.3 2.3E-05 4.9E-10 82.3 17.4 152 49-233 46-209 (234)
87 PRK14964 DNA polymerase III su 98.3 8.3E-06 1.8E-10 93.2 14.7 181 20-228 8-213 (491)
88 PRK13341 recombination factor 98.3 1.3E-05 2.8E-10 96.6 17.1 174 20-227 23-212 (725)
89 PRK07994 DNA polymerase III su 98.3 3.7E-05 8E-10 90.7 20.2 193 20-229 11-217 (647)
90 PRK05896 DNA polymerase III su 98.3 7.2E-06 1.6E-10 95.1 13.5 199 20-233 11-222 (605)
91 PRK07940 DNA polymerase III su 98.3 1.3E-05 2.8E-10 90.0 15.1 189 24-232 4-213 (394)
92 PRK14955 DNA polymerase III su 98.3 6.5E-06 1.4E-10 93.7 12.7 201 20-229 11-225 (397)
93 PRK14970 DNA polymerase III su 98.3 1.2E-05 2.5E-10 91.3 14.8 183 20-228 12-205 (367)
94 COG1474 CDC6 Cdc6-related prot 98.3 1.8E-05 4E-10 87.8 15.8 207 19-232 11-238 (366)
95 PRK14958 DNA polymerase III su 98.3 3.4E-05 7.5E-10 89.8 18.7 183 20-229 11-217 (509)
96 PRK09087 hypothetical protein; 98.3 2.9E-05 6.2E-10 80.7 16.2 140 48-231 44-194 (226)
97 TIGR00678 holB DNA polymerase 98.2 1.4E-05 2.9E-10 81.3 13.5 90 130-228 95-187 (188)
98 PF00308 Bac_DnaA: Bacterial d 98.2 5.2E-05 1.1E-09 78.5 17.9 182 25-231 8-207 (219)
99 PRK14969 DNA polymerase III su 98.2 3.2E-05 6.9E-10 90.7 17.8 199 20-232 11-221 (527)
100 PRK14954 DNA polymerase III su 98.2 2.8E-05 6E-10 92.0 17.2 200 20-227 11-223 (620)
101 PLN03150 hypothetical protein; 98.2 2.8E-06 6E-11 102.5 9.1 106 545-650 419-526 (623)
102 PRK14952 DNA polymerase III su 98.2 3.5E-05 7.6E-10 90.5 17.8 206 20-235 8-223 (584)
103 PRK03992 proteasome-activating 98.2 2.1E-05 4.7E-10 89.0 15.7 172 23-225 129-336 (389)
104 KOG2120 SCF ubiquitin ligase, 98.2 2.7E-08 5.8E-13 100.7 -6.9 157 569-744 186-349 (419)
105 PF13401 AAA_22: AAA domain; P 98.2 5.5E-06 1.2E-10 78.7 9.1 114 48-168 4-125 (131)
106 PF14516 AAA_35: AAA-like doma 98.2 0.00028 6E-09 78.2 23.8 211 19-239 5-246 (331)
107 PRK14959 DNA polymerase III su 98.2 6.2E-05 1.3E-09 88.0 18.9 202 20-236 11-225 (624)
108 PRK07133 DNA polymerase III su 98.2 3.2E-05 7E-10 91.7 16.6 200 20-233 13-221 (725)
109 PHA02544 44 clamp loader, smal 98.2 1.5E-05 3.3E-10 88.5 13.1 153 20-199 16-171 (316)
110 PRK07764 DNA polymerase III su 98.2 4.3E-05 9.4E-10 93.3 17.6 194 20-227 10-216 (824)
111 PRK09111 DNA polymerase III su 98.2 6.7E-05 1.4E-09 88.7 18.3 197 20-231 19-232 (598)
112 KOG1909 Ran GTPase-activating 98.1 2.4E-07 5.1E-12 96.6 -1.9 63 705-767 182-252 (382)
113 PRK06305 DNA polymerase III su 98.1 5.1E-05 1.1E-09 87.3 16.7 198 20-232 12-223 (451)
114 TIGR02639 ClpA ATP-dependent C 98.1 4E-05 8.7E-10 94.4 16.7 158 20-201 177-358 (731)
115 PRK14087 dnaA chromosomal repl 98.1 5.9E-05 1.3E-09 86.7 16.9 168 48-234 141-321 (450)
116 KOG0989 Replication factor C, 98.1 5.8E-05 1.2E-09 77.9 14.7 193 20-232 31-231 (346)
117 KOG2120 SCF ubiquitin ligase, 98.1 1E-07 2.2E-12 96.6 -5.6 178 442-649 186-373 (419)
118 PRK15386 type III secretion pr 98.1 8.3E-06 1.8E-10 89.7 8.6 135 483-650 48-188 (426)
119 PRK14950 DNA polymerase III su 98.1 9.6E-05 2.1E-09 88.4 18.2 199 20-232 11-221 (585)
120 PLN03150 hypothetical protein; 98.1 6E-06 1.3E-10 99.6 7.8 106 569-674 419-527 (623)
121 KOG2982 Uncharacterized conser 98.1 1.1E-06 2.4E-11 89.3 1.1 229 543-793 44-284 (418)
122 PRK08451 DNA polymerase III su 98.1 6.5E-05 1.4E-09 86.8 15.2 199 20-232 9-218 (535)
123 PRK14953 DNA polymerase III su 98.0 0.0002 4.2E-09 83.1 19.0 196 20-232 11-220 (486)
124 PTZ00361 26 proteosome regulat 98.0 4.3E-05 9.3E-10 86.6 13.0 160 20-203 178-369 (438)
125 PRK06647 DNA polymerase III su 98.0 0.00019 4.1E-09 84.6 18.6 196 20-229 11-217 (563)
126 PRK14948 DNA polymerase III su 98.0 0.00019 4.1E-09 85.6 18.8 200 20-232 11-222 (620)
127 TIGR02881 spore_V_K stage V sp 98.0 6.4E-05 1.4E-09 80.6 13.1 155 25-203 6-193 (261)
128 TIGR03345 VI_ClpV1 type VI sec 98.0 0.00011 2.4E-09 91.1 16.7 159 20-201 182-363 (852)
129 TIGR02903 spore_lon_C ATP-depe 98.0 9.7E-05 2.1E-09 88.4 15.7 209 20-235 149-398 (615)
130 PRK14088 dnaA chromosomal repl 98.0 0.00022 4.8E-09 82.0 18.0 161 48-230 130-303 (440)
131 KOG2227 Pre-initiation complex 98.0 0.00041 8.9E-09 75.9 18.5 218 9-233 135-373 (529)
132 KOG0531 Protein phosphatase 1, 98.0 1E-06 2.2E-11 101.6 -1.4 108 564-675 91-199 (414)
133 PRK05563 DNA polymerase III su 98.0 0.00031 6.8E-09 83.1 18.9 194 20-229 11-217 (559)
134 PTZ00454 26S protease regulato 98.0 0.0002 4.3E-09 80.7 16.4 177 20-226 140-351 (398)
135 PRK00149 dnaA chromosomal repl 97.9 0.00028 6.1E-09 82.1 18.0 181 27-230 125-320 (450)
136 PF05673 DUF815: Protein of un 97.9 0.00063 1.4E-08 69.4 17.8 56 21-76 23-80 (249)
137 CHL00095 clpC Clp protease ATP 97.9 0.00016 3.4E-09 90.3 16.6 170 6-200 162-353 (821)
138 TIGR03689 pup_AAA proteasome A 97.9 0.00023 5E-09 81.9 16.5 163 21-201 178-378 (512)
139 PRK14971 DNA polymerase III su 97.9 0.00019 4.1E-09 85.6 16.1 196 20-229 12-219 (614)
140 TIGR00362 DnaA chromosomal rep 97.9 0.00033 7.1E-09 80.5 17.0 181 27-230 113-308 (405)
141 PRK06620 hypothetical protein; 97.9 0.00014 2.9E-09 75.0 12.4 136 49-229 45-186 (214)
142 PF13855 LRR_8: Leucine rich r 97.9 1.6E-05 3.4E-10 63.8 4.3 57 569-625 2-59 (61)
143 COG2255 RuvB Holliday junction 97.8 0.00033 7.1E-09 71.7 13.7 267 20-325 21-316 (332)
144 PRK12422 chromosomal replicati 97.8 0.00043 9.3E-09 79.4 16.1 154 48-225 141-306 (445)
145 PRK10865 protein disaggregatio 97.8 0.00031 6.8E-09 87.5 15.9 159 20-201 173-354 (857)
146 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00036 7.8E-09 87.4 16.5 159 20-201 168-349 (852)
147 PRK14086 dnaA chromosomal repl 97.8 0.00067 1.4E-08 79.1 17.2 156 49-227 315-483 (617)
148 KOG2543 Origin recognition com 97.7 0.0005 1.1E-08 73.3 14.0 170 23-200 4-192 (438)
149 PRK05707 DNA polymerase III su 97.7 0.00041 8.8E-09 76.2 13.9 95 131-232 107-203 (328)
150 PRK14965 DNA polymerase III su 97.7 0.00074 1.6E-08 80.4 17.1 202 20-232 11-221 (576)
151 PF13855 LRR_8: Leucine rich r 97.7 3.4E-05 7.4E-10 61.8 3.9 59 591-650 1-60 (61)
152 CHL00176 ftsH cell division pr 97.7 0.00062 1.4E-08 81.3 15.9 173 23-224 181-386 (638)
153 PRK07399 DNA polymerase III su 97.7 0.00089 1.9E-08 73.2 15.8 194 25-232 4-221 (314)
154 KOG1859 Leucine-rich repeat pr 97.7 9.5E-07 2.1E-11 99.9 -7.6 180 537-746 102-292 (1096)
155 TIGR02880 cbbX_cfxQ probable R 97.7 0.0012 2.7E-08 71.3 16.5 155 26-202 23-209 (284)
156 TIGR01241 FtsH_fam ATP-depende 97.7 0.00063 1.4E-08 80.2 15.4 175 23-226 53-260 (495)
157 KOG0531 Protein phosphatase 1, 97.7 6.5E-06 1.4E-10 94.9 -1.4 34 441-474 72-105 (414)
158 cd01128 rho_factor Transcripti 97.7 4.1E-05 8.9E-10 80.2 4.7 93 48-143 16-115 (249)
159 CHL00181 cbbX CbbX; Provisiona 97.7 0.0024 5.2E-08 69.0 18.4 154 26-203 24-211 (287)
160 PRK08116 hypothetical protein; 97.6 0.00033 7.1E-09 74.9 10.9 102 49-169 115-221 (268)
161 PRK11034 clpA ATP-dependent Cl 97.6 0.00043 9.3E-09 84.2 13.0 155 24-201 185-362 (758)
162 PRK09376 rho transcription ter 97.6 0.00011 2.4E-09 80.1 6.8 93 48-143 169-268 (416)
163 PF00004 AAA: ATPase family as 97.6 0.00048 1E-08 65.3 10.5 23 51-73 1-23 (132)
164 COG1222 RPT1 ATP-dependent 26S 97.6 0.0008 1.7E-08 71.3 12.7 168 25-226 151-357 (406)
165 COG1373 Predicted ATPase (AAA+ 97.6 0.00066 1.4E-08 77.0 13.2 121 50-197 39-163 (398)
166 KOG0991 Replication factor C, 97.6 0.0008 1.7E-08 66.5 11.6 52 20-73 22-73 (333)
167 KOG1859 Leucine-rich repeat pr 97.6 1E-06 2.3E-11 99.6 -9.4 101 395-496 106-218 (1096)
168 PRK12377 putative replication 97.5 0.0013 2.8E-08 69.0 13.5 36 48-83 101-136 (248)
169 PF12799 LRR_4: Leucine Rich r 97.5 6.9E-05 1.5E-09 54.9 2.9 34 734-767 2-35 (44)
170 TIGR00602 rad24 checkpoint pro 97.5 0.00066 1.4E-08 80.4 12.1 55 19-73 78-135 (637)
171 COG0593 DnaA ATPase involved i 97.5 0.0018 3.9E-08 71.9 14.6 162 47-231 112-289 (408)
172 PRK08769 DNA polymerase III su 97.5 0.0027 5.9E-08 69.1 15.8 95 130-233 112-209 (319)
173 TIGR01243 CDC48 AAA family ATP 97.5 0.0017 3.7E-08 80.5 15.9 174 24-227 177-382 (733)
174 COG3267 ExeA Type II secretory 97.4 0.0068 1.5E-07 61.7 16.6 205 22-235 25-248 (269)
175 CHL00195 ycf46 Ycf46; Provisio 97.4 0.0026 5.6E-08 73.5 15.7 176 23-226 226-429 (489)
176 PRK08058 DNA polymerase III su 97.4 0.0014 2.9E-08 72.7 12.9 163 25-200 5-181 (329)
177 PRK06871 DNA polymerase III su 97.4 0.0033 7.2E-08 68.5 15.0 177 33-229 10-200 (325)
178 PLN00020 ribulose bisphosphate 97.4 0.0049 1.1E-07 66.7 15.6 154 46-227 146-333 (413)
179 PF12799 LRR_4: Leucine Rich r 97.4 0.00019 4.2E-09 52.5 3.6 40 708-749 1-40 (44)
180 PRK08181 transposase; Validate 97.4 0.00085 1.9E-08 71.2 10.0 35 49-83 107-141 (269)
181 TIGR00767 rho transcription te 97.4 0.00028 6E-09 77.6 6.2 93 48-143 168-267 (415)
182 COG2812 DnaX DNA polymerase II 97.4 0.0017 3.7E-08 74.3 12.7 191 20-225 11-213 (515)
183 PRK06090 DNA polymerase III su 97.3 0.0063 1.4E-07 66.2 16.2 178 33-232 11-201 (319)
184 TIGR01243 CDC48 AAA family ATP 97.3 0.0043 9.3E-08 77.0 16.5 172 25-226 453-657 (733)
185 PRK10536 hypothetical protein; 97.3 0.0012 2.6E-08 68.4 9.5 52 25-80 55-108 (262)
186 PRK07952 DNA replication prote 97.3 0.0016 3.5E-08 68.1 10.7 49 34-82 85-133 (244)
187 PRK07993 DNA polymerase III su 97.3 0.0032 7E-08 69.4 13.5 180 32-230 9-202 (334)
188 PF10443 RNA12: RNA12 protein; 97.3 0.017 3.6E-07 64.0 18.3 197 30-238 1-284 (431)
189 PF05621 TniB: Bacterial TniB 97.3 0.0075 1.6E-07 63.8 15.1 202 25-231 34-260 (302)
190 PF01695 IstB_IS21: IstB-like 97.2 0.00052 1.1E-08 68.4 6.3 36 48-83 47-82 (178)
191 KOG2982 Uncharacterized conser 97.2 0.00012 2.6E-09 74.9 1.7 43 704-746 220-262 (418)
192 KOG3665 ZYG-1-like serine/thre 97.2 0.00016 3.4E-09 87.1 2.9 110 542-652 146-263 (699)
193 PRK09183 transposase/IS protei 97.2 0.001 2.2E-08 70.9 8.5 34 49-82 103-136 (259)
194 smart00382 AAA ATPases associa 97.2 0.00067 1.5E-08 65.1 6.7 28 49-76 3-30 (148)
195 PRK06526 transposase; Provisio 97.2 0.0021 4.6E-08 67.9 10.7 28 48-75 98-125 (254)
196 TIGR00763 lon ATP-dependent pr 97.1 0.0041 8.9E-08 77.3 13.8 51 26-76 321-375 (775)
197 COG5238 RNA1 Ran GTPase-activa 97.1 9.7E-05 2.1E-09 74.5 -0.6 165 564-746 26-227 (388)
198 PRK11331 5-methylcytosine-spec 97.1 0.0029 6.4E-08 70.9 10.8 47 24-74 174-220 (459)
199 KOG2228 Origin recognition com 97.1 0.005 1.1E-07 64.8 11.6 188 8-201 10-219 (408)
200 KOG0733 Nuclear AAA ATPase (VC 97.1 0.007 1.5E-07 68.5 13.5 153 24-202 189-375 (802)
201 COG1223 Predicted ATPase (AAA+ 97.1 0.0085 1.8E-07 60.6 12.7 173 23-225 119-318 (368)
202 PRK06835 DNA replication prote 97.1 0.0011 2.4E-08 72.6 7.3 35 49-83 184-218 (329)
203 TIGR02640 gas_vesic_GvpN gas v 97.1 0.019 4.2E-07 61.5 16.5 37 33-73 10-46 (262)
204 COG0466 Lon ATP-dependent Lon 97.1 0.0043 9.4E-08 71.8 11.9 158 26-201 324-508 (782)
205 KOG0730 AAA+-type ATPase [Post 97.0 0.0046 1E-07 70.9 11.5 133 46-205 466-619 (693)
206 TIGR02902 spore_lonB ATP-depen 97.0 0.0048 1E-07 72.9 12.0 52 19-72 59-110 (531)
207 KOG3665 ZYG-1-like serine/thre 97.0 0.00026 5.6E-09 85.2 1.1 79 544-624 122-204 (699)
208 PRK06921 hypothetical protein; 96.9 0.0013 2.9E-08 70.1 6.2 36 48-83 117-153 (266)
209 PRK06964 DNA polymerase III su 96.9 0.036 7.8E-07 61.0 17.4 92 130-232 131-225 (342)
210 PRK08939 primosomal protein Dn 96.9 0.0049 1.1E-07 67.1 10.4 37 47-83 155-191 (306)
211 PF13177 DNA_pol3_delta2: DNA 96.9 0.0081 1.8E-07 59.0 10.8 43 29-72 1-43 (162)
212 COG0470 HolB ATPase involved i 96.9 0.031 6.7E-07 62.4 17.1 123 26-169 2-149 (325)
213 COG2607 Predicted ATPase (AAA+ 96.9 0.011 2.3E-07 59.4 11.4 56 23-78 58-115 (287)
214 cd01133 F1-ATPase_beta F1 ATP 96.9 0.004 8.7E-08 65.6 8.9 41 48-88 69-109 (274)
215 KOG0741 AAA+-type ATPase [Post 96.8 0.014 3.1E-07 64.8 13.0 132 46-200 536-685 (744)
216 PRK08699 DNA polymerase III su 96.8 0.031 6.6E-07 61.5 15.7 87 131-228 114-202 (325)
217 PF07693 KAP_NTPase: KAP famil 96.8 0.049 1.1E-06 60.8 17.9 77 30-106 1-80 (325)
218 KOG0744 AAA+-type ATPase [Post 96.8 0.012 2.6E-07 61.5 11.3 36 48-83 177-216 (423)
219 PRK04132 replication factor C 96.8 0.017 3.6E-07 70.7 14.4 155 53-230 569-729 (846)
220 TIGR02639 ClpA ATP-dependent C 96.8 0.017 3.8E-07 71.4 15.0 49 25-73 454-509 (731)
221 PRK10787 DNA-binding ATP-depen 96.8 0.0073 1.6E-07 74.3 11.6 51 26-76 323-377 (784)
222 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.004 8.7E-08 60.0 7.1 119 49-170 3-139 (159)
223 PF04665 Pox_A32: Poxvirus A32 96.7 0.036 7.7E-07 57.4 14.1 34 49-82 14-47 (241)
224 KOG0731 AAA+-type ATPase conta 96.7 0.058 1.2E-06 64.2 17.2 178 23-229 309-521 (774)
225 KOG0735 AAA+-type ATPase [Post 96.6 0.031 6.7E-07 64.6 14.1 75 48-142 431-505 (952)
226 COG1484 DnaC DNA replication p 96.6 0.01 2.2E-07 62.9 9.9 36 47-83 104-139 (254)
227 PHA00729 NTP-binding motif con 96.6 0.012 2.6E-07 60.0 9.9 27 47-73 16-42 (226)
228 COG0542 clpA ATP-binding subun 96.6 0.013 2.9E-07 70.0 11.5 118 25-154 491-618 (786)
229 TIGR03345 VI_ClpV1 type VI sec 96.6 0.01 2.3E-07 73.9 11.2 50 25-74 566-622 (852)
230 KOG1947 Leucine rich repeat pr 96.6 0.00037 8E-09 82.8 -1.5 35 486-520 187-223 (482)
231 PF02562 PhoH: PhoH-like prote 96.6 0.015 3.2E-07 58.7 10.2 129 30-170 5-157 (205)
232 KOG1644 U2-associated snRNP A' 96.5 0.0047 1E-07 60.3 6.0 39 704-742 109-149 (233)
233 PF03215 Rad17: Rad17 cell cyc 96.5 0.013 2.7E-07 68.4 10.6 61 20-82 14-77 (519)
234 KOG2004 Mitochondrial ATP-depe 96.5 0.015 3.3E-07 67.1 10.9 52 25-76 411-466 (906)
235 COG0542 clpA ATP-binding subun 96.5 0.0063 1.4E-07 72.7 8.2 154 23-201 168-346 (786)
236 PRK10733 hflB ATP-dependent me 96.5 0.03 6.5E-07 67.9 14.3 154 25-202 152-336 (644)
237 KOG2035 Replication factor C, 96.5 0.05 1.1E-06 55.8 13.3 214 21-252 9-259 (351)
238 PRK11889 flhF flagellar biosyn 96.5 0.025 5.5E-07 62.2 12.1 29 47-75 240-268 (436)
239 KOG0734 AAA+-type ATPase conta 96.5 0.021 4.5E-07 63.7 11.5 148 24-201 303-484 (752)
240 PRK05541 adenylylsulfate kinas 96.5 0.0093 2E-07 59.8 8.4 37 47-83 6-42 (176)
241 PRK10865 protein disaggregatio 96.5 0.016 3.5E-07 72.5 12.2 50 25-74 568-624 (857)
242 KOG0728 26S proteasome regulat 96.5 0.058 1.3E-06 54.2 13.4 154 20-201 141-331 (404)
243 PRK00771 signal recognition pa 96.5 0.03 6.6E-07 63.8 13.3 70 4-75 42-122 (437)
244 KOG1514 Origin recognition com 96.5 0.042 9.2E-07 63.7 14.3 204 21-234 392-623 (767)
245 PRK09361 radB DNA repair and r 96.5 0.0063 1.4E-07 63.8 7.4 48 36-83 11-58 (225)
246 PF07728 AAA_5: AAA domain (dy 96.5 0.003 6.6E-08 60.5 4.5 22 51-72 2-23 (139)
247 PF13207 AAA_17: AAA domain; P 96.5 0.0024 5.1E-08 59.5 3.6 23 50-72 1-23 (121)
248 COG1618 Predicted nucleotide k 96.5 0.0032 7E-08 59.1 4.2 34 49-82 6-40 (179)
249 PRK11034 clpA ATP-dependent Cl 96.5 0.027 5.9E-07 68.8 13.3 49 25-73 458-513 (758)
250 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0028 6.1E-08 69.1 4.3 49 26-74 52-104 (361)
251 PRK12608 transcription termina 96.4 0.0084 1.8E-07 65.8 7.5 104 36-143 122-232 (380)
252 PRK14974 cell division protein 96.3 0.067 1.5E-06 58.8 14.4 29 47-75 139-167 (336)
253 KOG0733 Nuclear AAA ATPase (VC 96.3 0.035 7.5E-07 63.1 12.0 128 48-202 545-693 (802)
254 KOG4579 Leucine-rich repeat (L 96.3 0.0003 6.4E-09 63.8 -3.2 110 546-657 29-141 (177)
255 KOG4579 Leucine-rich repeat (L 96.3 0.00021 4.6E-09 64.7 -4.1 59 707-767 76-134 (177)
256 TIGR01650 PD_CobS cobaltochela 96.3 0.062 1.3E-06 58.2 13.5 53 21-77 41-93 (327)
257 PRK06696 uridine kinase; Valid 96.3 0.0074 1.6E-07 63.0 6.4 47 29-75 2-49 (223)
258 KOG1644 U2-associated snRNP A' 96.3 0.0058 1.3E-07 59.7 4.9 60 707-766 87-150 (233)
259 CHL00095 clpC Clp protease ATP 96.3 0.023 5E-07 71.3 11.7 50 25-74 509-565 (821)
260 PRK04296 thymidine kinase; Pro 96.3 0.011 2.5E-07 59.8 7.5 112 49-170 3-117 (190)
261 cd01129 PulE-GspE PulE/GspE Th 96.3 0.016 3.6E-07 61.8 9.0 101 33-150 68-168 (264)
262 cd01131 PilT Pilus retraction 96.3 0.025 5.5E-07 57.7 10.1 110 49-171 2-111 (198)
263 TIGR03346 chaperone_ClpB ATP-d 96.2 0.018 3.8E-07 72.5 10.4 51 25-75 565-622 (852)
264 PRK07667 uridine kinase; Provi 96.2 0.0092 2E-07 60.7 6.5 42 34-75 3-44 (193)
265 PRK12724 flagellar biosynthesi 96.2 0.042 9E-07 61.4 11.9 25 48-72 223-247 (432)
266 cd01120 RecA-like_NTPases RecA 96.2 0.014 3E-07 57.5 7.6 34 50-83 1-34 (165)
267 PRK12723 flagellar biosynthesi 96.2 0.041 8.8E-07 61.7 11.7 27 47-73 173-199 (388)
268 PF00448 SRP54: SRP54-type pro 96.1 0.0097 2.1E-07 60.3 6.1 28 48-75 1-28 (196)
269 PRK10867 signal recognition pa 96.1 0.072 1.6E-06 60.6 13.6 41 35-75 80-127 (433)
270 TIGR02237 recomb_radB DNA repa 96.1 0.009 1.9E-07 61.8 5.8 44 40-83 4-47 (209)
271 cd01393 recA_like RecA is a b 96.1 0.033 7.1E-07 58.4 10.1 48 36-83 7-60 (226)
272 KOG1947 Leucine rich repeat pr 96.0 0.00066 1.4E-08 80.6 -3.4 35 463-497 187-224 (482)
273 COG0464 SpoVK ATPases of the A 96.0 0.05 1.1E-06 64.5 12.4 151 25-202 242-424 (494)
274 TIGR00064 ftsY signal recognit 96.0 0.021 4.5E-07 61.2 8.2 30 46-75 70-99 (272)
275 TIGR00959 ffh signal recogniti 96.0 0.094 2E-06 59.7 13.8 70 4-73 45-124 (428)
276 PRK06067 flagellar accessory p 96.0 0.026 5.7E-07 59.5 8.9 48 36-83 13-60 (234)
277 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.013 2.9E-07 61.9 6.5 37 36-72 7-43 (235)
278 cd01394 radB RadB. The archaea 95.9 0.02 4.4E-07 59.6 7.6 49 35-83 6-54 (218)
279 KOG0739 AAA+-type ATPase [Post 95.9 0.096 2.1E-06 54.2 11.9 52 25-76 133-194 (439)
280 PRK06762 hypothetical protein; 95.9 0.033 7.1E-07 55.2 8.7 24 49-72 3-26 (166)
281 COG5238 RNA1 Ran GTPase-activa 95.9 0.0043 9.3E-08 63.0 2.2 93 637-746 155-255 (388)
282 PF13604 AAA_30: AAA domain; P 95.9 0.046 9.9E-07 55.7 9.7 39 34-75 7-45 (196)
283 KOG0743 AAA+-type ATPase [Post 95.8 0.16 3.5E-06 56.3 13.8 25 48-72 235-259 (457)
284 cd01121 Sms Sms (bacterial rad 95.8 0.044 9.6E-07 61.3 9.9 49 35-83 69-117 (372)
285 TIGR01817 nifA Nif-specific re 95.7 0.12 2.6E-06 61.8 14.2 50 23-72 194-243 (534)
286 PRK14722 flhF flagellar biosyn 95.7 0.12 2.6E-06 57.5 12.9 29 48-76 137-165 (374)
287 PF01583 APS_kinase: Adenylyls 95.7 0.016 3.4E-07 55.7 5.2 35 49-83 3-37 (156)
288 KOG1970 Checkpoint RAD17-RFC c 95.7 0.13 2.9E-06 58.0 12.9 50 23-72 80-134 (634)
289 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.075 1.6E-06 53.6 10.6 23 50-72 1-23 (183)
290 PRK05703 flhF flagellar biosyn 95.7 0.15 3.2E-06 58.4 14.0 26 48-73 221-246 (424)
291 PRK08118 topology modulation p 95.7 0.0086 1.9E-07 59.1 3.4 25 50-74 3-27 (167)
292 KOG2739 Leucine-rich acidic nu 95.7 0.005 1.1E-07 62.8 1.7 61 543-603 64-128 (260)
293 PRK15455 PrkA family serine pr 95.7 0.014 3E-07 67.1 5.3 52 24-75 75-130 (644)
294 PF07726 AAA_3: ATPase family 95.7 0.0087 1.9E-07 54.7 3.0 29 51-79 2-30 (131)
295 KOG0651 26S proteasome regulat 95.6 0.055 1.2E-06 56.5 8.8 30 47-76 165-194 (388)
296 cd02027 APSK Adenosine 5'-phos 95.6 0.067 1.4E-06 51.8 9.2 25 50-74 1-25 (149)
297 COG1121 ZnuC ABC-type Mn/Zn tr 95.6 0.039 8.4E-07 57.3 7.7 52 121-174 147-204 (254)
298 cd03238 ABC_UvrA The excision 95.5 0.043 9.3E-07 54.5 7.8 22 48-69 21-42 (176)
299 COG4088 Predicted nucleotide k 95.5 0.052 1.1E-06 53.2 7.8 28 49-76 2-29 (261)
300 TIGR02012 tigrfam_recA protein 95.5 0.032 6.9E-07 60.6 7.2 50 34-83 40-90 (321)
301 PF13671 AAA_33: AAA domain; P 95.5 0.044 9.5E-07 52.7 7.6 24 50-73 1-24 (143)
302 PF13238 AAA_18: AAA domain; P 95.5 0.011 2.4E-07 55.6 3.3 22 51-72 1-22 (129)
303 PRK15429 formate hydrogenlyase 95.5 0.048 1E-06 67.3 9.6 51 22-72 373-423 (686)
304 TIGR01425 SRP54_euk signal rec 95.4 0.22 4.9E-06 56.3 13.8 29 47-75 99-127 (429)
305 cd00544 CobU Adenosylcobinamid 95.4 0.032 6.9E-07 55.0 6.3 22 50-71 1-22 (169)
306 COG4608 AppF ABC-type oligopep 95.4 0.035 7.5E-07 57.7 6.7 126 47-175 38-176 (268)
307 PRK05986 cob(I)alamin adenolsy 95.4 0.056 1.2E-06 53.6 7.9 120 48-170 22-159 (191)
308 cd00983 recA RecA is a bacter 95.4 0.038 8.2E-07 60.1 7.3 50 34-83 40-90 (325)
309 KOG0729 26S proteasome regulat 95.4 0.043 9.4E-07 55.6 7.1 48 25-72 177-235 (435)
310 KOG0652 26S proteasome regulat 95.4 0.46 9.9E-06 48.3 14.1 57 20-76 166-233 (424)
311 TIGR01420 pilT_fam pilus retra 95.4 0.081 1.8E-06 59.1 10.2 108 49-170 123-231 (343)
312 PRK05800 cobU adenosylcobinami 95.4 0.012 2.7E-07 58.0 3.3 23 50-72 3-25 (170)
313 PF00485 PRK: Phosphoribulokin 95.4 0.014 3E-07 59.5 3.8 26 50-75 1-26 (194)
314 COG1066 Sms Predicted ATP-depe 95.4 0.096 2.1E-06 57.3 10.1 49 34-83 79-127 (456)
315 TIGR02858 spore_III_AA stage I 95.4 0.052 1.1E-06 57.8 8.2 117 46-173 109-233 (270)
316 TIGR00708 cobA cob(I)alamin ad 95.4 0.052 1.1E-06 53.1 7.4 117 49-170 6-141 (173)
317 COG2884 FtsE Predicted ATPase 95.4 0.12 2.6E-06 50.3 9.6 55 120-176 144-204 (223)
318 PF10236 DAP3: Mitochondrial r 95.4 0.36 7.8E-06 52.9 14.9 48 182-229 258-306 (309)
319 PRK09354 recA recombinase A; P 95.4 0.044 9.6E-07 60.1 7.7 50 34-83 45-95 (349)
320 TIGR03574 selen_PSTK L-seryl-t 95.3 0.034 7.3E-07 59.3 6.7 26 50-75 1-26 (249)
321 COG1875 NYN ribonuclease and A 95.3 0.088 1.9E-06 56.4 9.4 41 27-69 226-266 (436)
322 PRK12726 flagellar biosynthesi 95.3 0.41 8.9E-06 52.8 14.8 36 47-82 205-240 (407)
323 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.039 8.4E-07 53.0 6.4 34 48-82 26-59 (144)
324 cd03222 ABC_RNaseL_inhibitor T 95.3 0.047 1E-06 54.3 7.1 25 49-73 26-50 (177)
325 PF08433 KTI12: Chromatin asso 95.3 0.05 1.1E-06 58.0 7.7 27 49-75 2-28 (270)
326 PRK07261 topology modulation p 95.3 0.014 3.1E-07 57.9 3.3 23 50-72 2-24 (171)
327 CHL00206 ycf2 Ycf2; Provisiona 95.3 0.13 2.8E-06 66.8 12.2 27 47-73 1629-1655(2281)
328 TIGR02974 phageshock_pspF psp 95.2 0.14 3E-06 56.7 11.3 46 27-72 1-46 (329)
329 TIGR02238 recomb_DMC1 meiotic 95.2 0.036 7.8E-07 60.6 6.5 36 35-70 83-118 (313)
330 PF03308 ArgK: ArgK protein; 95.2 0.046 9.9E-07 56.4 6.7 43 33-75 14-56 (266)
331 PF08423 Rad51: Rad51; InterP 95.2 0.027 5.8E-07 59.9 5.3 36 36-71 26-61 (256)
332 KOG1969 DNA replication checkp 95.2 0.052 1.1E-06 63.1 7.7 26 46-71 324-349 (877)
333 TIGR03499 FlhF flagellar biosy 95.1 0.082 1.8E-06 57.2 9.0 29 47-75 193-221 (282)
334 cd02019 NK Nucleoside/nucleoti 95.1 0.018 4E-07 47.2 3.0 23 50-72 1-23 (69)
335 COG0563 Adk Adenylate kinase a 95.1 0.11 2.4E-06 51.6 9.1 22 50-71 2-23 (178)
336 KOG0727 26S proteasome regulat 95.1 0.068 1.5E-06 53.7 7.3 52 25-76 155-217 (408)
337 PRK13531 regulatory ATPase Rav 95.1 0.025 5.3E-07 64.3 4.8 46 25-74 20-65 (498)
338 PRK10416 signal recognition pa 95.1 0.043 9.4E-07 60.1 6.6 29 47-75 113-141 (318)
339 PTZ00301 uridine kinase; Provi 95.1 0.028 6E-07 57.6 4.8 29 48-76 3-31 (210)
340 cd03214 ABC_Iron-Siderophores_ 95.0 0.071 1.5E-06 53.6 7.7 123 48-172 25-161 (180)
341 COG0572 Udk Uridine kinase [Nu 95.0 0.028 6E-07 56.7 4.6 30 46-75 6-35 (218)
342 PRK08356 hypothetical protein; 95.0 0.15 3.3E-06 51.9 10.1 21 49-69 6-26 (195)
343 PRK14723 flhF flagellar biosyn 95.0 0.18 3.9E-06 60.9 12.0 26 48-73 185-210 (767)
344 KOG2739 Leucine-rich acidic nu 95.0 0.013 2.7E-07 60.0 2.0 83 590-673 64-154 (260)
345 PF00437 T2SE: Type II/IV secr 95.0 0.041 8.9E-07 59.5 6.1 127 25-169 104-232 (270)
346 cd03228 ABCC_MRP_Like The MRP 95.0 0.092 2E-06 52.2 8.2 34 48-82 28-61 (171)
347 TIGR00150 HI0065_YjeE ATPase, 94.9 0.036 7.9E-07 51.7 4.8 41 33-73 7-47 (133)
348 PF00910 RNA_helicase: RNA hel 94.9 0.017 3.6E-07 52.3 2.5 26 51-76 1-26 (107)
349 COG0465 HflB ATP-dependent Zn 94.9 0.14 3.1E-06 59.7 10.5 154 22-201 147-333 (596)
350 KOG0740 AAA+-type ATPase [Post 94.9 0.37 8E-06 53.9 13.3 31 46-76 184-214 (428)
351 cd03223 ABCD_peroxisomal_ALDP 94.9 0.14 3E-06 50.6 9.1 26 48-73 27-52 (166)
352 PRK09270 nucleoside triphospha 94.9 0.037 7.9E-07 58.1 5.3 31 46-76 31-61 (229)
353 PF00154 RecA: recA bacterial 94.9 0.21 4.6E-06 54.2 11.1 102 32-143 36-143 (322)
354 PRK11823 DNA repair protein Ra 94.9 0.12 2.7E-06 59.6 10.0 50 34-83 66-115 (446)
355 PRK08233 hypothetical protein; 94.9 0.022 4.7E-07 57.4 3.4 26 48-73 3-28 (182)
356 PTZ00088 adenylate kinase 1; P 94.8 0.11 2.5E-06 53.9 8.6 23 50-72 8-30 (229)
357 PRK04040 adenylate kinase; Pro 94.8 0.032 6.9E-07 56.3 4.3 25 49-73 3-27 (188)
358 PRK05480 uridine/cytidine kina 94.8 0.027 5.8E-07 58.2 3.9 26 47-72 5-30 (209)
359 PRK03839 putative kinase; Prov 94.7 0.026 5.7E-07 56.7 3.6 24 50-73 2-25 (180)
360 TIGR00416 sms DNA repair prote 94.7 0.13 2.9E-06 59.4 9.7 50 34-83 80-129 (454)
361 KOG2123 Uncharacterized conser 94.7 0.0023 4.9E-08 65.2 -4.1 96 661-783 18-123 (388)
362 COG1136 SalX ABC-type antimicr 94.7 0.19 4.1E-06 51.4 9.5 54 121-175 150-209 (226)
363 cd01125 repA Hexameric Replica 94.7 0.18 4E-06 53.2 10.0 24 50-73 3-26 (239)
364 KOG0737 AAA+-type ATPase [Post 94.7 0.26 5.6E-06 53.2 10.8 55 25-79 92-158 (386)
365 cd03247 ABCC_cytochrome_bd The 94.6 0.087 1.9E-06 52.8 7.1 26 48-73 28-53 (178)
366 TIGR00235 udk uridine kinase. 94.6 0.032 7E-07 57.5 4.1 27 47-73 5-31 (207)
367 PF06068 TIP49: TIP49 C-termin 94.6 0.055 1.2E-06 58.7 5.7 60 22-81 21-83 (398)
368 COG1428 Deoxynucleoside kinase 94.6 0.028 6.2E-07 55.8 3.3 26 48-73 4-29 (216)
369 PRK00625 shikimate kinase; Pro 94.6 0.029 6.3E-07 55.5 3.4 24 50-73 2-25 (173)
370 cd01130 VirB11-like_ATPase Typ 94.6 0.054 1.2E-06 54.7 5.5 94 49-151 26-120 (186)
371 KOG1532 GTPase XAB1, interacts 94.6 0.097 2.1E-06 53.6 7.0 33 46-78 17-49 (366)
372 PF00406 ADK: Adenylate kinase 94.6 0.066 1.4E-06 52.0 5.9 88 53-151 1-94 (151)
373 cd03230 ABC_DR_subfamily_A Thi 94.6 0.1 2.2E-06 52.0 7.3 25 48-72 26-50 (173)
374 PRK00131 aroK shikimate kinase 94.5 0.032 7E-07 55.7 3.8 26 48-73 4-29 (175)
375 COG4240 Predicted kinase [Gene 94.5 0.15 3.2E-06 50.9 8.0 85 46-131 48-133 (300)
376 KOG0726 26S proteasome regulat 94.5 0.076 1.7E-06 54.7 6.2 57 20-76 180-247 (440)
377 TIGR03575 selen_PSTK_euk L-ser 94.4 0.077 1.7E-06 58.2 6.6 23 51-73 2-24 (340)
378 cd03115 SRP The signal recogni 94.4 0.2 4.4E-06 49.9 9.2 26 50-75 2-27 (173)
379 PRK04301 radA DNA repair and r 94.4 0.094 2E-06 58.0 7.4 37 36-72 90-126 (317)
380 cd01122 GP4d_helicase GP4d_hel 94.4 0.28 6E-06 53.0 11.0 36 48-83 30-66 (271)
381 COG0468 RecA RecA/RadA recombi 94.4 0.1 2.2E-06 55.4 7.2 47 37-83 49-95 (279)
382 PRK06547 hypothetical protein; 94.4 0.042 9.1E-07 54.4 4.0 27 46-72 13-39 (172)
383 cd03278 ABC_SMC_barmotin Barmo 94.4 0.2 4.3E-06 51.0 9.1 21 50-70 24-44 (197)
384 PLN03187 meiotic recombination 94.4 0.063 1.4E-06 59.1 5.8 35 36-70 114-148 (344)
385 COG1224 TIP49 DNA helicase TIP 94.4 0.09 2E-06 56.1 6.5 60 20-79 34-96 (450)
386 COG1419 FlhF Flagellar GTP-bin 94.3 0.66 1.4E-05 51.4 13.3 26 48-73 203-228 (407)
387 COG5635 Predicted NTPase (NACH 94.3 0.21 4.5E-06 62.9 10.9 211 49-271 223-467 (824)
388 cd03246 ABCC_Protease_Secretio 94.3 0.15 3.3E-06 50.8 8.0 34 48-82 28-61 (173)
389 TIGR02782 TrbB_P P-type conjug 94.3 0.24 5.2E-06 54.0 9.9 89 49-150 133-223 (299)
390 PRK12727 flagellar biosynthesi 94.3 0.25 5.4E-06 57.0 10.2 29 47-75 349-377 (559)
391 PRK00279 adk adenylate kinase; 94.2 0.2 4.4E-06 51.9 9.0 23 50-72 2-24 (215)
392 cd03232 ABC_PDR_domain2 The pl 94.2 0.22 4.9E-06 50.5 9.1 24 48-71 33-56 (192)
393 KOG2170 ATPase of the AAA+ sup 94.2 0.13 2.8E-06 53.7 7.2 37 36-72 97-134 (344)
394 PRK00889 adenylylsulfate kinas 94.2 0.063 1.4E-06 53.7 5.0 28 48-75 4-31 (175)
395 COG0396 sufC Cysteine desulfur 94.2 0.13 2.8E-06 51.8 6.8 60 120-179 151-214 (251)
396 KOG0780 Signal recognition par 94.2 0.73 1.6E-05 49.9 12.7 78 5-82 48-135 (483)
397 TIGR01360 aden_kin_iso1 adenyl 94.2 0.044 9.4E-07 55.6 3.8 26 47-72 2-27 (188)
398 PF00560 LRR_1: Leucine Rich R 94.1 0.024 5.3E-07 34.4 1.1 21 734-754 1-21 (22)
399 cd03216 ABC_Carb_Monos_I This 94.1 0.07 1.5E-06 52.6 5.0 116 48-172 26-145 (163)
400 PF03969 AFG1_ATPase: AFG1-lik 94.1 0.098 2.1E-06 58.3 6.7 104 46-170 60-168 (362)
401 PRK09280 F0F1 ATP synthase sub 94.1 0.12 2.5E-06 58.9 7.3 40 48-87 144-183 (463)
402 cd00227 CPT Chloramphenicol (C 94.1 0.045 9.8E-07 54.7 3.7 26 49-74 3-28 (175)
403 COG0541 Ffh Signal recognition 94.1 1.1 2.4E-05 49.8 14.3 76 5-83 47-134 (451)
404 TIGR00390 hslU ATP-dependent p 94.1 0.07 1.5E-06 59.4 5.3 52 25-76 12-75 (441)
405 PRK13947 shikimate kinase; Pro 94.1 0.043 9.2E-07 54.7 3.4 26 50-75 3-28 (171)
406 COG3640 CooC CO dehydrogenase 94.0 0.074 1.6E-06 53.6 4.9 37 50-86 2-38 (255)
407 cd02028 UMPK_like Uridine mono 94.0 0.06 1.3E-06 53.9 4.4 26 50-75 1-26 (179)
408 TIGR01069 mutS2 MutS2 family p 94.0 0.18 3.8E-06 62.3 9.2 113 130-252 401-521 (771)
409 PRK12597 F0F1 ATP synthase sub 94.0 0.2 4.3E-06 57.3 8.9 40 48-87 143-182 (461)
410 PF12775 AAA_7: P-loop contain 94.0 0.1 2.2E-06 56.0 6.3 25 49-73 34-58 (272)
411 cd03213 ABCG_EPDR ABCG transpo 94.0 0.26 5.6E-06 50.2 9.0 25 48-72 35-59 (194)
412 cd03281 ABC_MSH5_euk MutS5 hom 94.0 0.049 1.1E-06 56.2 3.7 23 48-70 29-51 (213)
413 TIGR02524 dot_icm_DotB Dot/Icm 94.0 0.1 2.2E-06 58.3 6.4 95 48-150 134-231 (358)
414 PRK03846 adenylylsulfate kinas 94.0 0.076 1.6E-06 54.3 5.1 37 46-82 22-58 (198)
415 PF03205 MobB: Molybdopterin g 94.0 0.077 1.7E-06 50.5 4.8 28 49-76 1-28 (140)
416 COG1703 ArgK Putative periplas 94.0 0.11 2.4E-06 54.4 6.1 44 34-77 37-80 (323)
417 KOG0730 AAA+-type ATPase [Post 94.0 0.3 6.6E-06 56.6 10.2 153 26-202 185-365 (693)
418 PF03266 NTPase_1: NTPase; In 94.0 0.067 1.5E-06 52.7 4.4 24 51-74 2-25 (168)
419 TIGR00455 apsK adenylylsulfate 93.9 0.29 6.3E-06 49.3 9.2 27 48-74 18-44 (184)
420 PRK05439 pantothenate kinase; 93.9 0.083 1.8E-06 57.2 5.4 29 46-74 84-112 (311)
421 cd01428 ADK Adenylate kinase ( 93.9 0.42 9.1E-06 48.6 10.5 22 51-72 2-23 (194)
422 PRK07132 DNA polymerase III su 93.9 1.6 3.4E-05 47.4 15.1 167 35-231 6-184 (299)
423 PRK14528 adenylate kinase; Pro 93.8 0.23 5E-06 50.1 8.2 24 49-72 2-25 (186)
424 COG2274 SunT ABC-type bacterio 93.8 0.14 3E-06 62.3 7.7 23 48-70 499-521 (709)
425 PTZ00035 Rad51 protein; Provis 93.8 0.17 3.6E-06 56.1 7.7 38 35-72 105-142 (337)
426 KOG1051 Chaperone HSP104 and r 93.8 0.52 1.1E-05 57.7 12.4 104 26-144 563-673 (898)
427 cd00071 GMPK Guanosine monopho 93.8 0.041 9E-07 52.3 2.6 26 50-75 1-26 (137)
428 PRK05022 anaerobic nitric oxid 93.8 0.13 2.8E-06 60.9 7.4 51 23-73 185-235 (509)
429 TIGR03600 phage_DnaB phage rep 93.8 0.46 1E-05 55.0 11.8 26 48-73 194-219 (421)
430 PF00625 Guanylate_kin: Guanyl 93.8 0.068 1.5E-06 53.9 4.3 35 48-82 2-36 (183)
431 TIGR02533 type_II_gspE general 93.8 0.2 4.4E-06 58.4 8.7 100 34-150 231-330 (486)
432 cd03283 ABC_MutS-like MutS-lik 93.8 0.38 8.1E-06 49.1 9.7 24 49-72 26-49 (199)
433 KOG2123 Uncharacterized conser 93.8 0.0038 8.2E-08 63.6 -4.7 41 704-744 59-99 (388)
434 TIGR01039 atpD ATP synthase, F 93.8 0.24 5.3E-06 56.2 8.9 40 48-87 143-182 (461)
435 TIGR02788 VirB11 P-type DNA tr 93.7 0.15 3.2E-06 56.1 7.2 109 48-170 144-254 (308)
436 PRK05201 hslU ATP-dependent pr 93.7 0.085 1.9E-06 58.8 5.2 52 25-76 15-78 (443)
437 PRK14531 adenylate kinase; Pro 93.7 0.35 7.5E-06 48.7 9.3 24 49-72 3-26 (183)
438 PRK11388 DNA-binding transcrip 93.7 0.72 1.6E-05 56.6 13.8 50 23-72 323-372 (638)
439 TIGR01351 adk adenylate kinase 93.7 0.22 4.8E-06 51.4 8.0 22 51-72 2-23 (210)
440 COG0529 CysC Adenylylsulfate k 93.7 0.099 2.1E-06 50.2 4.8 33 47-79 22-54 (197)
441 TIGR02655 circ_KaiC circadian 93.7 0.2 4.3E-06 58.9 8.5 50 34-83 249-298 (484)
442 cd02024 NRK1 Nicotinamide ribo 93.6 0.047 1E-06 54.6 2.8 23 50-72 1-23 (187)
443 PRK10820 DNA-binding transcrip 93.6 0.41 8.9E-06 56.8 11.1 53 19-71 198-250 (520)
444 PRK14529 adenylate kinase; Pro 93.6 0.31 6.7E-06 50.3 8.7 23 51-73 3-25 (223)
445 KOG0736 Peroxisome assembly fa 93.6 1.1 2.5E-05 52.9 13.9 48 28-75 404-458 (953)
446 TIGR02236 recomb_radA DNA repa 93.6 0.18 4E-06 55.6 7.7 38 36-73 83-120 (310)
447 cd03240 ABC_Rad50 The catalyti 93.6 0.26 5.6E-06 50.5 8.2 21 49-69 23-43 (204)
448 PF06309 Torsin: Torsin; Inte 93.6 0.12 2.6E-06 47.2 5.0 46 26-71 26-76 (127)
449 PF00158 Sigma54_activat: Sigm 93.6 0.066 1.4E-06 52.8 3.6 45 27-71 1-45 (168)
450 cd00267 ABC_ATPase ABC (ATP-bi 93.6 0.12 2.7E-06 50.5 5.6 116 49-174 26-145 (157)
451 PRK06995 flhF flagellar biosyn 93.6 0.3 6.5E-06 56.2 9.4 27 48-74 256-282 (484)
452 PRK10463 hydrogenase nickel in 93.5 0.14 3E-06 54.6 6.2 36 46-81 102-137 (290)
453 COG4133 CcmA ABC-type transpor 93.5 0.054 1.2E-06 52.6 2.7 26 49-74 29-54 (209)
454 TIGR02322 phosphon_PhnN phosph 93.4 0.063 1.4E-06 53.9 3.4 25 49-73 2-26 (179)
455 cd02025 PanK Pantothenate kina 93.4 0.056 1.2E-06 56.1 3.0 25 50-74 1-25 (220)
456 smart00534 MUTSac ATPase domai 93.4 0.043 9.3E-07 55.4 2.1 21 50-70 1-21 (185)
457 PRK10751 molybdopterin-guanine 93.4 0.13 2.9E-06 50.4 5.4 29 47-75 5-33 (173)
458 TIGR02525 plasmid_TraJ plasmid 93.4 0.17 3.6E-06 56.6 6.8 93 49-150 150-244 (372)
459 COG0703 AroK Shikimate kinase 93.4 0.067 1.5E-06 51.9 3.2 29 49-77 3-31 (172)
460 cd02020 CMPK Cytidine monophos 93.3 0.064 1.4E-06 51.8 3.1 24 50-73 1-24 (147)
461 PRK13948 shikimate kinase; Pro 93.3 0.076 1.7E-06 53.0 3.7 28 47-74 9-36 (182)
462 COG0194 Gmk Guanylate kinase [ 93.3 0.086 1.9E-06 51.4 3.8 24 49-72 5-28 (191)
463 TIGR02239 recomb_RAD51 DNA rep 93.3 0.16 3.6E-06 55.7 6.5 36 35-70 83-118 (316)
464 PRK05917 DNA polymerase III su 93.3 0.92 2E-05 48.6 11.9 39 33-72 5-43 (290)
465 COG0714 MoxR-like ATPases [Gen 93.3 0.11 2.4E-06 57.8 5.4 51 26-80 25-75 (329)
466 COG1102 Cmk Cytidylate kinase 93.3 0.071 1.5E-06 50.4 3.1 25 50-74 2-26 (179)
467 PRK10436 hypothetical protein; 93.2 0.34 7.4E-06 55.9 9.2 100 33-149 206-305 (462)
468 KOG0735 AAA+-type ATPase [Post 93.2 1.4 3E-05 51.7 13.7 150 25-201 667-848 (952)
469 PRK06217 hypothetical protein; 93.2 0.067 1.5E-06 53.9 3.2 24 50-73 3-26 (183)
470 cd02023 UMPK Uridine monophosp 93.2 0.063 1.4E-06 54.9 3.0 23 50-72 1-23 (198)
471 cd00464 SK Shikimate kinase (S 93.2 0.075 1.6E-06 51.8 3.4 23 51-73 2-24 (154)
472 PRK13975 thymidylate kinase; P 93.2 0.081 1.8E-06 54.0 3.8 26 49-74 3-28 (196)
473 cd02021 GntK Gluconate kinase 93.2 0.062 1.4E-06 52.1 2.8 23 50-72 1-23 (150)
474 PRK05342 clpX ATP-dependent pr 93.2 0.12 2.7E-06 58.6 5.5 49 26-74 72-134 (412)
475 PRK14526 adenylate kinase; Pro 93.2 0.42 9.1E-06 49.1 8.9 22 51-72 3-24 (211)
476 COG3854 SpoIIIAA ncharacterize 93.2 0.44 9.6E-06 47.8 8.5 113 49-171 138-255 (308)
477 cd03217 ABC_FeS_Assembly ABC-t 93.1 0.34 7.3E-06 49.6 8.2 24 48-71 26-49 (200)
478 PRK13946 shikimate kinase; Pro 93.1 0.076 1.6E-06 53.5 3.4 25 49-73 11-35 (184)
479 PRK06731 flhF flagellar biosyn 93.1 0.83 1.8E-05 48.7 11.3 28 48-75 75-102 (270)
480 PRK13949 shikimate kinase; Pro 93.1 0.081 1.8E-06 52.4 3.5 24 50-73 3-26 (169)
481 KOG0736 Peroxisome assembly fa 93.1 0.65 1.4E-05 54.8 11.0 98 20-142 666-775 (953)
482 PRK09435 membrane ATPase/prote 93.1 0.21 4.5E-06 54.9 6.9 41 35-75 43-83 (332)
483 cd03282 ABC_MSH4_euk MutS4 hom 93.1 0.24 5.3E-06 50.6 7.0 24 47-70 28-51 (204)
484 PRK15453 phosphoribulokinase; 93.0 0.14 3E-06 54.0 5.2 28 47-74 4-31 (290)
485 PRK12339 2-phosphoglycerate ki 93.0 0.087 1.9E-06 53.4 3.6 25 48-72 3-27 (197)
486 PF00006 ATP-synt_ab: ATP synt 93.0 0.33 7.1E-06 49.8 7.7 26 49-74 16-41 (215)
487 PRK05057 aroK shikimate kinase 92.9 0.092 2E-06 52.2 3.6 25 49-73 5-29 (172)
488 PHA02244 ATPase-like protein 92.9 0.094 2E-06 57.5 3.9 46 25-74 96-145 (383)
489 COG4618 ArpD ABC-type protease 92.9 0.26 5.6E-06 55.4 7.2 22 49-70 363-384 (580)
490 PRK01184 hypothetical protein; 92.9 0.86 1.9E-05 45.9 10.8 21 49-70 2-22 (184)
491 cd02029 PRK_like Phosphoribulo 92.9 0.33 7.1E-06 50.9 7.6 26 50-75 1-26 (277)
492 PRK05537 bifunctional sulfate 92.9 0.15 3.3E-06 60.6 5.9 49 26-74 370-418 (568)
493 PRK14738 gmk guanylate kinase; 92.9 0.094 2E-06 53.9 3.8 31 41-71 6-36 (206)
494 PRK08506 replicative DNA helic 92.9 0.97 2.1E-05 52.8 12.4 36 47-82 191-226 (472)
495 COG1936 Predicted nucleotide k 92.9 0.077 1.7E-06 50.9 2.7 20 50-69 2-21 (180)
496 cd03233 ABC_PDR_domain1 The pl 92.9 0.43 9.2E-06 48.9 8.6 26 48-73 33-58 (202)
497 PLN03186 DNA repair protein RA 92.9 0.19 4E-06 55.6 6.2 37 35-71 110-146 (342)
498 TIGR00176 mobB molybdopterin-g 92.9 0.12 2.6E-06 50.3 4.1 26 50-75 1-26 (155)
499 COG0003 ArsA Predicted ATPase 92.8 0.13 2.8E-06 56.0 4.8 31 48-78 2-32 (322)
500 PRK13765 ATP-dependent proteas 92.8 0.16 3.5E-06 60.8 6.0 62 19-84 25-87 (637)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.8e-102 Score=989.91 Aligned_cols=897 Identities=33% Similarity=0.536 Sum_probs=693.2
Q ss_pred CHHHHHHHHHHHHHhhcc-CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccce
Q 048831 1 NESEFIEEIVNVISSKIH-TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYAS 79 (1051)
Q Consensus 1 ~e~~~i~~i~~~i~~~l~-~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 79 (1051)
+|+++|++||++|++++. +++.+.+++|||+.++++|.+++..+.+++++|+||||||+||||||+++|+++..+|+..
T Consensus 159 ~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~ 238 (1153)
T PLN03210 159 NEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSS 238 (1153)
T ss_pred CHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeE
Confidence 599999999999999999 8888889999999999999999987778899999999999999999999999999999999
Q ss_pred EEEeeh--hhh---hh-----cCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHH
Q 048831 80 SFLADV--RER---FE-----KEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVEQLQSL 149 (1051)
Q Consensus 80 ~~~~~~--~~~---~~-----~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~~~~l 149 (1051)
+|+... +.. .. .......++++++..+....+.... ....++++++++|+||||||||+.++|+.+
T Consensus 239 vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~----~~~~~~~~L~~krvLLVLDdv~~~~~l~~L 314 (1153)
T PLN03210 239 VFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY----HLGAMEERLKHRKVLIFIDDLDDQDVLDAL 314 (1153)
T ss_pred EEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccC----CHHHHHHHHhCCeEEEEEeCCCCHHHHHHH
Confidence 887542 111 10 1112245667777776644333221 125678889999999999999999999999
Q ss_pred hcCCCCCCCCCEEEEEeCChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 150 AGKRDWFGLGSRILITTRDKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 150 ~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.....|+++|++||||||++.++..++++. +|+|+.|+.++|++||+++||++..+.+.+++++++|+++|+|+|||+
T Consensus 315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~--~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl 392 (1153)
T PLN03210 315 AGQTQWFGSGSRIIVITKDKHFLRAHGIDH--IYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGL 392 (1153)
T ss_pred HhhCccCCCCcEEEEEeCcHHHHHhcCCCe--EEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHH
Confidence 998889999999999999999987766665 999999999999999999999888788889999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhcCCCchHHHHHHHhccCCCh-hcccceeeeecccCCCCHHHHHHHHhhcCCCcchhh
Q 048831 230 KVLGSFLIGRSVDQWRSALERLKRDPSNKIMSILQISFDGLQD-SEKKIFLDVACFFKQKNRDYVTKILEGCGFFPVIGI 308 (1051)
Q Consensus 230 ~~~g~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~l 308 (1051)
+++|++|++++..+|++++++++..++..|..+|++||++|++ .+|.||+++||||.+.+.+++..+++.+++.+..++
T Consensus 393 ~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l 472 (1153)
T PLN03210 393 NVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGL 472 (1153)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhCh
Confidence 9999999999999999999999998889999999999999987 589999999999999999999999999999899999
Q ss_pred hHhhccCceeEeCCCceehhHHHHHHHHHHHhhcCCCCCCCcccccchhHHHHHHhcCCCCccEEEEEeeccccccceee
Q 048831 309 EVLIERSLLTVDDYNTLGMHDLLQELGQLIVTRQSPEEPGKRSRLWRQEEVRHVLTKNAGSEVVEGMIIDVHFFLKNEVR 388 (1051)
Q Consensus 309 ~~L~~~sLi~~~~~~~~~mHdll~~~~~~i~~~e~~~~~~~~~~l~~~~~i~~~l~~~~~~~~i~~i~~~~~~~~~~~~~ 388 (1051)
+.|++++||+.. .+++.|||++|+||++++++++ .+|++|+++|+++||++++..++|++.+++|.++ .....+..
T Consensus 473 ~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~--~~~~~~~~ 548 (1153)
T PLN03210 473 KNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLD--IDEIDELH 548 (1153)
T ss_pred HHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEec--cCccceee
Confidence 999999999987 5789999999999999999997 7899999999999999999999999999999999 77777889
Q ss_pred echhhhcCCCCCcEEEecCc----------ccCCcccccCcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccc
Q 048831 389 LSAKAFSLMTNLRFLNIGNV----------QLPEGLEYLSNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWK 458 (1051)
Q Consensus 389 ~~~~~f~~~~~Lr~L~l~~~----------~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~ 458 (1051)
+...+|.+|++|++|.+.++ ++|+++..++.+||+|+|.+|+++.+|..+.+.+|++|+|+++.++.+|.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccc
Confidence 99999999999999999654 36788889999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCcc
Q 048831 459 GIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPV 538 (1051)
Q Consensus 459 ~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~ 538 (1051)
++..+++|+.|+|+++..+..+|+++.+++|+.|+|++|..+..+|.++..+++|+.|++++|..++.+|...
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i------- 701 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI------- 701 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999888877643
Q ss_pred ccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCc------c-cccc
Q 048831 539 TISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVR------L-PNSI 611 (1051)
Q Consensus 539 ~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~------l-p~~i 611 (1051)
++++|++|++++|..++.+|.. ..+|+.|++++|.+..+|..+ .+++|+.|.+.++..... + |...
T Consensus 702 ---~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 702 ---NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred ---CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhh
Confidence 3889999999999999888865 467999999999999999876 588899998887543211 1 1112
Q ss_pred cCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCC-CcCCCcccccccCCcEEEccCCCCCCCCCcccCCcccccc
Q 048831 612 NGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTA-TRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLM 690 (1051)
Q Consensus 612 ~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 690 (1051)
...++|+.|++++|..+..+|..++++++|+.|++++|. +..+|..+ .+++|+.|++++|......
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~------------ 841 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF------------ 841 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc------------
Confidence 234567777777777777777777777777777777654 55555544 5666666666666543221
Q ss_pred ccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCC-CceeccccccCCCCCCEEeccCCccc
Q 048831 691 RKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGN-NFVTLPASISGLFNLKYLELEDCKRL 769 (1051)
Q Consensus 691 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~l~~c~~L 769 (1051)
|. ..++|+.|+|++|.+.+ +|..+..+++|+.|+|++| ++..+|..+..+++|+.|++++|+.|
T Consensus 842 ----------p~---~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 842 ----------PD---ISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ----------cc---cccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 10 12355566666665542 5555555666666666553 45555555555566666666666555
Q ss_pred cccC--CCCCCCceEeecCCccccccccccccccccccccccchhhhHHhhhHHHHHHHHHHHHHhhccCCCCceEEEcC
Q 048831 770 QSLP--QLPPNVIKVSVNGCASLLTLLGALKLRKSSWTTIYCIDSLKLLEKNDLAISMLREHLELQAVSDSDRNLSIVVP 847 (1051)
Q Consensus 770 ~~lp--~lp~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p 847 (1051)
..++ ..|.++..+. .++.+ .++. ..+..+.+|+.. .... .++.. .....+++|
T Consensus 907 ~~~~l~~~~~~~~~~~-~n~~~--~~p~-----~~~l~f~nC~~L----~~~a----------~l~~~---~~~~~~~l~ 961 (1153)
T PLN03210 907 TEASWNGSPSEVAMAT-DNIHS--KLPS-----TVCINFINCFNL----DQEA----------LLQQQ---SIFKQLILS 961 (1153)
T ss_pred ccccCCCCchhhhhhc-ccccc--cCCc-----hhccccccccCC----Cchh----------hhccc---ccceEEECC
Confidence 4432 1221111100 00000 0000 001122223211 0000 01111 112357899
Q ss_pred CCCCCCCccccCCceEEE-EEcCCCCcCCCceeeEEEEEEEecCCCCCCcccCCCCCCCceeeEEEEecCCCceEEeecc
Q 048831 848 GSEIPKWFMYQNEGSSIT-VTRPSYLYNVNKVVGYAVCCVFHVPKHSTGITGWRGRSDPIYMLDCSMDGSNGRHVIEFRE 926 (1051)
Q Consensus 848 g~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~~g~a~c~v~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 926 (1051)
|.++|.||.||+.|++++ +.+|+.|. ...+.||++|+|+++..... ......+.+.|++.+..|..+...
T Consensus 962 g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~~~------~~~~~~~~~~c~~~~~~~~~~~~~-- 1032 (1153)
T PLN03210 962 GEEVPSYFTHRTTGASLTNIPLLHISP-CQPFFRFRACAVVDSESFFI------ISVSFDIQVCCRFIDRLGNHFDSP-- 1032 (1153)
T ss_pred CccCchhccCCcccceeeeeccCCccc-CCCccceEEEEEEecCcccc------CCCceeEEEEEEEECCCCCccccC--
Confidence 999999999999999998 99999887 67899999999998665421 011123467788877655544311
Q ss_pred ccccCCCCeEEEEEecccc---------ccc-c--CCccccceEEEEEEccceeccccCCCCceEEEEEEEEEEecCcch
Q 048831 927 KFGHRGSDHLWLLFLSRYK---------HYK-N--NWLFESHHFKLSFTDGLVLNLLTGSGTGLKVKRCGFHPVYKQKVE 994 (1051)
Q Consensus 927 ~~~~~~sdh~~~~~~~~~~---------~~~-~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vk~cGv~liy~~~~~ 994 (1051)
.++|+|+.|..... ... + .+...++|++++|+. ......++||+|||+++|+++..
T Consensus 1033 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-------~~~~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1033 -----YQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRL-------TNKNSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred -----CCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEE-------ecCCCCeEEEeeeEEEeccCCCc
Confidence 35556655544211 111 1 111123566666631 11223479999999999977655
Q ss_pred h
Q 048831 995 E 995 (1051)
Q Consensus 995 ~ 995 (1051)
+
T Consensus 1101 ~ 1101 (1153)
T PLN03210 1101 N 1101 (1153)
T ss_pred c
Confidence 4
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-59 Score=564.44 Aligned_cols=527 Identities=28% Similarity=0.432 Sum_probs=382.6
Q ss_pred ccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHH---HhccccceEEEeehhhhhhcCCCHHHHHHHHHH
Q 048831 28 VGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDL---ISHEFYASSFLADVRERFEKEGSVISLQKQLLS 104 (1051)
Q Consensus 28 vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 104 (1051)
||.+..++++...|..+.. ++|+|+||||+||||||++++++ ++.+|+..+|+. |++.+. ...++++++.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~-VSk~f~----~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV-VSKEFT----TRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE-Eccccc----HHhHHHHHHH
Confidence 9999999999999987543 89999999999999999999983 678999999987 333222 2788999999
Q ss_pred HHhccCCC-ccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhHh-hCCCCcce
Q 048831 105 NLLKLGDI-SIWHVDDGINIIGSRLRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQLLVA-HEVDEEHI 182 (1051)
Q Consensus 105 ~l~~~~~~-~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~-~~~~~~~~ 182 (1051)
.+...... ......+....+.+.|+++|+||||||||+..+|+.+..+++...+|++|++|||++.|+.. +++.. .
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~--~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY--P 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc--c
Confidence 88742222 22223677888999999999999999999999999999999988899999999999999887 66544 8
Q ss_pred EEcCCCChhHHHHHHHHhhhcCC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHhcCC-CHHHHHHHHHHhhcC-----C
Q 048831 183 LNLDVLNDDEALQLFSMKAFKSH-QPVEEYVELSKRVLNYASGLPLALKVLGSFLIGR-SVDQWRSALERLKRD-----P 255 (1051)
Q Consensus 183 ~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~g~~L~~~-~~~~w~~~l~~l~~~-----~ 255 (1051)
++++.|+.+|||+||.+.||... ...+..+++|++++++|+|+|||++++|+.|+.+ +..+|+.+++.+... +
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred ccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 99999999999999999998763 3335589999999999999999999999999987 677999999988654 1
Q ss_pred --CchHHHHHHHhccCCChhcccceeeeecccCCC--CHHHHHHHHhhcCCCcc------------hhhhHhhccCceeE
Q 048831 256 --SNKIMSILQISFDGLQDSEKKIFLDVACFFKQK--NRDYVTKILEGCGFFPV------------IGIEVLIERSLLTV 319 (1051)
Q Consensus 256 --~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~------------~~l~~L~~~sLi~~ 319 (1051)
.+.+..+|++|||.|+++.|.||+|||.||+++ +++.++..|+++||+.. ..++.|++++|+..
T Consensus 392 ~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred chhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 357889999999999988999999999999998 77899999999998743 33899999999988
Q ss_pred eCC----CceehhHHHHHHHHHHHhhcCCCCCCCcccccchhHHHHHHhcCCCCccEEEEEee-ccccccceeeechhhh
Q 048831 320 DDY----NTLGMHDLLQELGQLIVTRQSPEEPGKRSRLWRQEEVRHVLTKNAGSEVVEGMIID-VHFFLKNEVRLSAKAF 394 (1051)
Q Consensus 320 ~~~----~~~~mHdll~~~~~~i~~~e~~~~~~~~~~l~~~~~i~~~l~~~~~~~~i~~i~~~-~~~~~~~~~~~~~~~f 394 (1051)
.+. .++.|||++|+||..++.+....... .+.-+ ....
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-------------------------~iv~~~~~~~------------ 514 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDFGKQEEN-------------------------QIVSDGVGLS------------ 514 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhccccccccc-------------------------eEEECCcCcc------------
Confidence 642 57999999999999999854311100 00000 0000
Q ss_pred cCCCCCcEEEecCcccCCcccccCcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEecCCC
Q 048831 395 SLMTNLRFLNIGNVQLPEGLEYLSNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHS 474 (1051)
Q Consensus 395 ~~~~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~ 474 (1051)
+.++... ....|.+.+.++.+..++......+ |++|-+..+
T Consensus 515 --------------~~~~~~~--~~~~rr~s~~~~~~~~~~~~~~~~~-----------------------L~tLll~~n 555 (889)
T KOG4658|consen 515 --------------EIPQVKS--WNSVRRMSLMNNKIEHIAGSSENPK-----------------------LRTLLLQRN 555 (889)
T ss_pred --------------ccccccc--hhheeEEEEeccchhhccCCCCCCc-----------------------cceEEEeec
Confidence 0000000 1235666666666666665554334 444444444
Q ss_pred CC-CCCCCC--CCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEee
Q 048831 475 EN-LIKTPN--FIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKL 551 (1051)
Q Consensus 475 ~~-l~~~~~--~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~L 551 (1051)
.. +..++. |..+|.|++|||++|..+.++|.+|+.+-+|++|++++ ..++.+|..+.+++.|.+|++
T Consensus 556 ~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~----------t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 556 SDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD----------TGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred chhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC----------CCccccchHHHHHHhhheecc
Confidence 32 333333 66777888888888888888888888888888888877 556677788888888888888
Q ss_pred eCCCCCCcCchhhCCCCCCCEEEecCccCcc---cCccccCCCCCCEEecCCCCCCCcccccccCCCCCCE----EeccC
Q 048831 552 SGCSKLKKFPAIVASMEDLSELYLDGTYITE---VPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKT----LNLSG 624 (1051)
Q Consensus 552 s~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~----L~L~~ 624 (1051)
..+..+..+|.....|.+|++|.+....... .-..+.++.+|+.|.+..... .+-..+..++.|.+ +.+.+
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred ccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcc
Confidence 8887777777777778888888887665221 112234455555555533221 11111222232322 22222
Q ss_pred CCCCCcCCcccCCCCCccEEEccCCCCc
Q 048831 625 CCKLENVPDTLGQVESLEELDISGTATR 652 (1051)
Q Consensus 625 c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 652 (1051)
......+..+..+.+|+.|.+.++.+.
T Consensus 704 -~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 704 -CSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred -cccceeecccccccCcceEEEEcCCCc
Confidence 222334444555666666666655543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-36 Score=333.91 Aligned_cols=270 Identities=32% Similarity=0.509 Sum_probs=212.4
Q ss_pred chhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHH--HhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHh
Q 048831 30 IESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDL--ISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLL 107 (1051)
Q Consensus 30 r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 107 (1051)
||.++++|.+.|....++.++|+|+||||+||||||++++++ ++.+|+.++|+.. ... ... ..++++++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~-~~~---~~~-~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSL-SKN---PSL-EQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEE-ES----SCC-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccc-ccc---ccc-cccccccccccc
Confidence 789999999999886678899999999999999999999987 8899987777763 222 223 778888888887
Q ss_pred ccCC-C-ccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhHhhCCCCcceEEc
Q 048831 108 KLGD-I-SIWHVDDGINIIGSRLRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQLLVAHEVDEEHILNL 185 (1051)
Q Consensus 108 ~~~~-~-~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l 185 (1051)
.... . ...+..+....+.+.++++++||||||||+...|+.+...+.....|++||||||+..++...... ...|+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l 154 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIEL 154 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEEC
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4422 1 345667788999999999999999999999999988888777777899999999999887655432 348999
Q ss_pred CCCChhHHHHHHHHhhhcCC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHhcCC-CHHHHHHHHHHhhcCC------Cc
Q 048831 186 DVLNDDEALQLFSMKAFKSH-QPVEEYVELSKRVLNYASGLPLALKVLGSFLIGR-SVDQWRSALERLKRDP------SN 257 (1051)
Q Consensus 186 ~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~g~~L~~~-~~~~w~~~l~~l~~~~------~~ 257 (1051)
++|+.+||++||.+.++... ...+..++.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++.... ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997655 2334556789999999999999999999999654 6788999998876432 46
Q ss_pred hHHHHHHHhccCCChhcccceeeeecccCCC--CHHHHHHHHhhcCCCcc
Q 048831 258 KIMSILQISFDGLQDSEKKIFLDVACFFKQK--NRDYVTKILEGCGFFPV 305 (1051)
Q Consensus 258 ~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~ 305 (1051)
.+..++..||+.|+++.|+||+++|+||.++ +.+.++++|.++|++..
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 7999999999999999999999999999986 58999999999998764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.7e-30 Score=331.98 Aligned_cols=389 Identities=21% Similarity=0.228 Sum_probs=295.2
Q ss_pred chhhhcCCCCCcEEEecCcccC----CcccccCcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcc-cccccccCCC
Q 048831 390 SAKAFSLMTNLRFLNIGNVQLP----EGLEYLSNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIE-ELWKGIKPLN 464 (1051)
Q Consensus 390 ~~~~f~~~~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~ 464 (1051)
.+.+|..+++|+.|++++|++. ..+.....+|++|++++|.+....+...+.+|++|++++|.+. .+|..+..++
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCC
Confidence 3678999999999999998754 3444345689999999998875444456889999999999987 6788899999
Q ss_pred CCCEEecCCCCCCCCCCC-CCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccC
Q 048831 465 TLKVMKLSHSENLIKTPN-FIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSL 543 (1051)
Q Consensus 465 ~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l 543 (1051)
+|++|++++|.....+|. ++++++|++|+|++|.....+|..++.+.+|+.|++++|.... .+|..++++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---------~~p~~l~~l 235 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG---------EIPYEIGGL 235 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC---------cCChhHhcC
Confidence 999999999987666664 8999999999999998888899999999999999999864322 456667788
Q ss_pred ceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEec
Q 048831 544 KCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYIT-EVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNL 622 (1051)
Q Consensus 544 ~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 622 (1051)
++|++|++++|...+.+|..++++++|++|++++|.+. .+|.++.++++|+.|++++|.....+|..+.++++|+.|++
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 89999999998888888888888999999999988886 57888888899999999988877788888888899999999
Q ss_pred cCCCCCCcCCcccCCCCCccEEEccCCCCc-CCCcccccccCCcEEEccCCCCCCCCCcccC-CccccccccCCCCc-cc
Q 048831 623 SGCCKLENVPDTLGQVESLEELDISGTATR-RPPSSIFLMKNLKTLSFSGCNGPPSTASCHL-NLPFNLMRKSSCPV-AL 699 (1051)
Q Consensus 623 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~ 699 (1051)
++|.....+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|......+.... ...+..+....+.. ..
T Consensus 316 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395 (968)
T ss_pred CCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc
Confidence 888888888888888889999999888875 5677888888888888888875443322111 11222333333332 34
Q ss_pred cCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCcee-ccccccCCCCCCEEeccCCccccccCCC--C
Q 048831 700 MLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVT-LPASISGLFNLKYLELEDCKRLQSLPQL--P 776 (1051)
Q Consensus 700 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~c~~L~~lp~l--p 776 (1051)
+|..+..+++|+.|++++|++. +.+|..+..+++|+.|++++|.++. +|..+..+++|+.|++++|+....+|.. .
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 474 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNSFS-GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474 (968)
T ss_pred CCHHHhCCCCCCEEECcCCEee-eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc
Confidence 4555667777777777777765 3456667777777777777777663 4445566677777777776655555542 2
Q ss_pred CCCceEeecCCc
Q 048831 777 PNVIKVSVNGCA 788 (1051)
Q Consensus 777 ~~L~~L~i~~C~ 788 (1051)
++|+.|++.+|.
T Consensus 475 ~~L~~L~ls~n~ 486 (968)
T PLN00113 475 KRLENLDLSRNQ 486 (968)
T ss_pred ccceEEECcCCc
Confidence 455555555543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=3e-29 Score=322.25 Aligned_cols=403 Identities=22% Similarity=0.261 Sum_probs=277.7
Q ss_pred chhhhcCCCCCcEEEecCcccC----CcccccCcCceEEEEcCCCCC-CCCCCC-CCCCeeEEEcCccCcc-cccccccC
Q 048831 390 SAKAFSLMTNLRFLNIGNVQLP----EGLEYLSNKLRLLNWHRYPLK-SLPSNL-QLDKIVEFQMCYSHIE-ELWKGIKP 462 (1051)
Q Consensus 390 ~~~~f~~~~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~l~~~~i~-~l~~~~~~ 462 (1051)
.+..|..+++|+.|++++|.+. ..+..+ .+|++|++++|.+. .+|..+ .+.+|++|++.+|.+. .+|..+..
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhC-cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 3456777788888888777643 333333 35788888777765 456666 6778888888877766 56667777
Q ss_pred CCCCCEEecCCCCCCCCCC-CCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCC-----------
Q 048831 463 LNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDC----------- 530 (1051)
Q Consensus 463 l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~----------- 530 (1051)
+++|++|++++|.....+| .++++++|++|+|++|.....+|.++..+.+|+.|++++|.....+|..
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 8888888888776655555 3777788888888777666667777777788888887776433222210
Q ss_pred ---CCC-CCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCc-ccCccccCCCCCCEEecCCCCCCC
Q 048831 531 ---KNL-SSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYIT-EVPSSIELLTGLELLNLNDCKNLV 605 (1051)
Q Consensus 531 ---~~l-~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~ 605 (1051)
+.+ ..+|..+..+++|++|++++|...+.+|..++.+.+|+.|++++|.+. .+|.++..+++|+.|++++|....
T Consensus 315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 001 133445556666666666666666666666666666666666666665 456666666666666666666666
Q ss_pred cccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCC-CcccccccCCcEEEccCCCCCCCCCcccCC
Q 048831 606 RLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRP-PSSIFLMKNLKTLSFSGCNGPPSTASCHLN 684 (1051)
Q Consensus 606 ~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 684 (1051)
.+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.+... |..+..+++|+.|++++|......+.....
T Consensus 395 ~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 474 (968)
T PLN00113 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474 (968)
T ss_pred cCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc
Confidence 6666677777777777777776666777777777777777777776543 445666777888888877765444433223
Q ss_pred ccccccccCCCCc-cccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCce-eccccccCCCCCCEEe
Q 048831 685 LPFNLMRKSSCPV-ALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFV-TLPASISGLFNLKYLE 762 (1051)
Q Consensus 685 ~~~~~l~~~~~~~-~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~ 762 (1051)
..+..+.+.++.. ...|..+.++++|+.|+|++|++. +.+|..+.++++|+.|+|++|.++ .+|..+..+++|+.|+
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 553 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS-GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcce-eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence 3445556666554 345566788889999999999885 467888888999999999999887 5678888899999999
Q ss_pred ccCCccccccCCC---CCCCceEeecCCccccccc
Q 048831 763 LEDCKRLQSLPQL---PPNVIKVSVNGCASLLTLL 794 (1051)
Q Consensus 763 l~~c~~L~~lp~l---p~~L~~L~i~~C~~L~~~~ 794 (1051)
+++|+....+|.. .++|+.|++.+|.-...+|
T Consensus 554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999887778752 3578888998887554444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.9e-28 Score=264.38 Aligned_cols=358 Identities=22% Similarity=0.330 Sum_probs=279.3
Q ss_pred CCCCcEEEecCcccCC-----cccccCcCceEEEEcCCCCCCCCCCC-CCCCeeEEEcCccCcccccccccCCCCCCEEe
Q 048831 397 MTNLRFLNIGNVQLPE-----GLEYLSNKLRLLNWHRYPLKSLPSNL-QLDKIVEFQMCYSHIEELWKGIKPLNTLKVMK 470 (1051)
Q Consensus 397 ~~~Lr~L~l~~~~l~~-----~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~ 470 (1051)
++-.|-.++++|.+.+ ..... ..+++|.+....+..+|..+ .+.+|+.|.+.+|++..+...+..++.|+.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 3445566777776543 33333 36899999999999999998 89999999999999999999999999999999
Q ss_pred cCCCCC--CCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccc-cccCceec
Q 048831 471 LSHSEN--LIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVT-ISSLKCLR 547 (1051)
Q Consensus 471 L~~~~~--l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~-l~~l~~L~ 547 (1051)
+++|+. ...++++-.+..|..|+|+. +.+.++|..+...+++..|+|++ +++.++|.. +-++..|-
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~----------N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSY----------NNIETIPNSLFINLTDLL 153 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEccc----------CccccCCchHHHhhHhHh
Confidence 998863 33455788999999999998 56899999999999999999988 566677765 34788888
Q ss_pred EEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccC-ccccCCCCCCEEecCCCCC-CCcccccccCCCCCCEEeccCC
Q 048831 548 TLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVP-SSIELLTGLELLNLNDCKN-LVRLPNSINGLKSLKTLNLSGC 625 (1051)
Q Consensus 548 ~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~-l~~lp~~i~~L~~L~~L~L~~c 625 (1051)
+|+||+| .++.+|+.+..+.+|++|.|++|.+..+. ..+..+++|+.|.+++... +..+|.++..|.+|..++++.|
T Consensus 154 fLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 9999984 68889999999999999999999876331 2344578888899988543 6678999999999999999875
Q ss_pred CCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCC--CccccCCC
Q 048831 626 CKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSC--PVALMLPS 703 (1051)
Q Consensus 626 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 703 (1051)
.+..+|+.+..+++|+.|++++|.++++...+....+|++|+++.|..+....-......+..+...++ ....+|+.
T Consensus 233 -~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 233 -NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred -CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 577889999999999999999999999988888899999999999876543211111111222222222 23556777
Q ss_pred CCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCcccc
Q 048831 704 LSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQ 770 (1051)
Q Consensus 704 l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~ 770 (1051)
++.+.+|+.+..++|.+. -+|+.++.+..|+.|.|+.|.+.++|..|.-++.|+.|++..|++|-
T Consensus 312 IGKL~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhhhhHHHHhhccccc--cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence 778888888888877763 47777888888888888888888888888888888888888887765
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=2.6e-28 Score=263.27 Aligned_cols=333 Identities=24% Similarity=0.330 Sum_probs=271.3
Q ss_pred echhhhcCCCCCcEEEecCcccC---CcccccCcCceEEEEcCCCCC--CCCCCC-CCCCeeEEEcCccCcccccccccC
Q 048831 389 LSAKAFSLMTNLRFLNIGNVQLP---EGLEYLSNKLRLLNWHRYPLK--SLPSNL-QLDKIVEFQMCYSHIEELWKGIKP 462 (1051)
Q Consensus 389 ~~~~~f~~~~~Lr~L~l~~~~l~---~~~~~l~~~Lr~L~l~~~~l~--~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~ 462 (1051)
.-+..++.+.+|.+|.+.+|++. +.+..++ .||.+.+.+|+++ .+|..+ .++.|..|++++|++++.|.++..
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~ 124 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLISVHGELSDLP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEY 124 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhHhhhhhhccch-hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhh
Confidence 34667788888888888888764 3444444 5899999988886 677766 899999999999999999999999
Q ss_pred CCCCCEEecCCCCCCCCCCC--CCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCC----CCccCCCCCCCCC
Q 048831 463 LNTLKVMKLSHSENLIKTPN--FIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTS----LTTLPDCKNLSSL 536 (1051)
Q Consensus 463 l~~L~~L~L~~~~~l~~~~~--~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~----l~~l~~~~~l~~l 536 (1051)
.+++-+|+||+|+. ..+|. |.++..|-.|+|++ +.+..+|+.+..+.+|++|.|++++- |+.+|+
T Consensus 125 AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs------- 195 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS------- 195 (1255)
T ss_pred hcCcEEEEcccCcc-ccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc-------
Confidence 99999999999854 44554 78899999999997 57899999999999999999998653 333333
Q ss_pred ccccccCceecEEeeeCCCC-CCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCC
Q 048831 537 PVTISSLKCLRTLKLSGCSK-LKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLK 615 (1051)
Q Consensus 537 p~~l~~l~~L~~L~Ls~c~~-~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~ 615 (1051)
+.+|++|.+++.+. +..+|..+..+.+|..++++.|.+..+|..+-++++|+.|+|++|. +..+....+...
T Consensus 196 ------mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~ 268 (1255)
T KOG0444|consen 196 ------MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWE 268 (1255)
T ss_pred ------chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHh
Confidence 77888999988665 3568999999999999999999999999999999999999999976 455555667788
Q ss_pred CCCEEeccCCCCCCcCCcccCCCCCccEEEccCCC--CcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccC
Q 048831 616 SLKTLNLSGCCKLENVPDTLGQVESLEELDISGTA--TRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKS 693 (1051)
Q Consensus 616 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 693 (1051)
+|++|+++.|. +..+|..+..+++|+.|.+.+|. +..+|++|+.+.+|+.+...+|...
T Consensus 269 ~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE------------------ 329 (1255)
T KOG0444|consen 269 NLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE------------------ 329 (1255)
T ss_pred hhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc------------------
Confidence 99999999864 67889999999999999999987 5688999999999999888876532
Q ss_pred CCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCC-ceeccccccCCCCCCEEecc
Q 048831 694 SCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNN-FVTLPASISGLFNLKYLELE 764 (1051)
Q Consensus 694 ~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~l~ 764 (1051)
..|..+..+..|+.|.|+.|.+.. +|+.+.-++.|+.|++..|. +..-|.--..-.+|+.-+|.
T Consensus 330 -----lVPEglcRC~kL~kL~L~~NrLiT--LPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 330 -----LVPEGLCRCVKLQKLKLDHNRLIT--LPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred -----cCchhhhhhHHHHHhcccccceee--chhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 237788999999999999999854 89999999999999999985 44444332333556665554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=5.2e-25 Score=237.10 Aligned_cols=350 Identities=24% Similarity=0.274 Sum_probs=221.1
Q ss_pred cEEEecCcccCCc-cc--ccCcCceEEEEcCCCCCCCCCCC-CCCCeeEEEcCccCcccccc-cccCCCCCCEEecCCCC
Q 048831 401 RFLNIGNVQLPEG-LE--YLSNKLRLLNWHRYPLKSLPSNL-QLDKIVEFQMCYSHIEELWK-GIKPLNTLKVMKLSHSE 475 (1051)
Q Consensus 401 r~L~l~~~~l~~~-~~--~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~ 475 (1051)
+.|++++|.+... +. +-..+|+.+.+..|.++.+|... ...+|+.|+|.+|.|..+-. .++.++-|++|||+.|.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 4477777665431 22 22235677777777777777666 34557777777777666533 35666677777777664
Q ss_pred CCC-CCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccc-cccCceecEEeeeC
Q 048831 476 NLI-KTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVT-ISSLKCLRTLKLSG 553 (1051)
Q Consensus 476 ~l~-~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~-l~~l~~L~~L~Ls~ 553 (1051)
... ..|.|..-+++++|+|+++....--...+..+++|..|.|+. +.++.+|.. |.++++|+.|+|..
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr----------NrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR----------NRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc----------CcccccCHHHhhhcchhhhhhccc
Confidence 322 233466666777777776432222223455566666666665 445555554 33477777777776
Q ss_pred CCCCCcCchhhCCCCCCCEEEecCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCC
Q 048831 554 CSKLKKFPAIVASMEDLSELYLDGTYITEVPSS-IELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVP 632 (1051)
Q Consensus 554 c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp 632 (1051)
|..-..-.-.+..+++|+.|.|..|.|..+... +-.+.++++|+|..|.....-..++.+|++|+.|+++.|..-..-+
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 543222234456677777777777777766543 4566777777777766555445566777777777777776666556
Q ss_pred cccCCCCCccEEEccCCCCcCCCc-ccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCC
Q 048831 633 DTLGQVESLEELDISGTATRRPPS-SIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLS 711 (1051)
Q Consensus 633 ~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~ 711 (1051)
+.....++|++|++++|.+..+++ ++..+..|+.|+|++|+..... --.+.++++|+
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~----------------------e~af~~lssL~ 368 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA----------------------EGAFVGLSSLH 368 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH----------------------hhHHHHhhhhh
Confidence 666667777777777777777754 4556677777777776532210 12366788999
Q ss_pred EEeccCCCCCCccc---cccccCCCcCcEEeccCCCceeccc-cccCCCCCCEEeccCCccccccC-C--CCCCCceEee
Q 048831 712 KLDLSDCGLREGAI---LSDICNLHSLKELYLSGNNFVTLPA-SISGLFNLKYLELEDCKRLQSLP-Q--LPPNVIKVSV 784 (1051)
Q Consensus 712 ~L~L~~~~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~c~~L~~lp-~--lp~~L~~L~i 784 (1051)
.|||++|.++ +.+ ...+..+++|+.|.+.||++..+|. .+.+++.|+.|+|.+|. +.+|. + -|-.|++|.+
T Consensus 369 ~LdLr~N~ls-~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 369 KLDLRSNELS-WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVM 446 (873)
T ss_pred hhcCcCCeEE-EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhhh
Confidence 9999999774 222 2235668999999999999999987 67889999999999887 44442 2 2235555543
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.4e-22 Score=259.89 Aligned_cols=333 Identities=23% Similarity=0.322 Sum_probs=264.7
Q ss_pred CcCceEEEEcCCCC-------CCCCCCC--CCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCCCCCCCCCc
Q 048831 418 SNKLRLLNWHRYPL-------KSLPSNL--QLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPN 488 (1051)
Q Consensus 418 ~~~Lr~L~l~~~~l-------~~lp~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~ 488 (1051)
..+|++|.+..+.. ..+|..+ -+.+|+.|.+.++.++.+|..+ .+.+|+.|++.+|........+..+++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~ 635 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTG 635 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCC
Confidence 34789998865532 2467666 3567999999999999999887 578999999999875444445788999
Q ss_pred cCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCC
Q 048831 489 LEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASME 568 (1051)
Q Consensus 489 L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~ 568 (1051)
|+.|+|++|..+..+| .+..+++|+.|++++|..+..+| ..+.++++|+.|++++|..++.+|..+ +++
T Consensus 636 Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp---------~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELP---------SSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred CCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccc---------hhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 9999999998888887 47889999999999998776544 467789999999999999999999876 789
Q ss_pred CCCEEEecCccC-cccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCC------cC-CcccCCCCC
Q 048831 569 DLSELYLDGTYI-TEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLE------NV-PDTLGQVES 640 (1051)
Q Consensus 569 ~L~~L~L~~~~i-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~------~l-p~~l~~l~~ 640 (1051)
+|+.|++++|.. ..+|.. .++|+.|+++++. +..+|..+ .+++|+.|.+.+|.... .+ +......++
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 999999999853 455542 4688999999876 56778765 58899999888754321 11 112233578
Q ss_pred ccEEEccCCC-CcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCC
Q 048831 641 LEELDISGTA-TRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCG 719 (1051)
Q Consensus 641 L~~L~l~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 719 (1051)
|+.|++++|. +..+|.+++++++|+.|++++|..+... |..+ ++++|+.|+|++|.
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L----------------------P~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL----------------------PTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee----------------------CCCC-CccccCEEECCCCC
Confidence 9999999986 6678999999999999999999765542 3323 68899999999996
Q ss_pred CCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCccccccCCCC---CCCceEeecCCccccccc
Q 048831 720 LREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQSLPQLP---PNVIKVSVNGCASLLTLL 794 (1051)
Q Consensus 720 l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~~lp~lp---~~L~~L~i~~C~~L~~~~ 794 (1051)
... .+|. ..++|+.|+|++|.++.+|.++..+++|+.|++++|++++.+|..+ ++|+.+++.+|++|..++
T Consensus 837 ~L~-~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 837 RLR-TFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ccc-cccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 542 2343 2468999999999999999999999999999999999999998644 567888999999997654
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-24 Score=234.50 Aligned_cols=353 Identities=23% Similarity=0.225 Sum_probs=205.9
Q ss_pred cEEEecCcccCCc-----ccccCcCceEEEEcCCCCCCCCCCC--CCCCeeEEEcCccCcccccccccCCCCCCEEecCC
Q 048831 401 RFLNIGNVQLPEG-----LEYLSNKLRLLNWHRYPLKSLPSNL--QLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSH 473 (1051)
Q Consensus 401 r~L~l~~~~l~~~-----~~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~ 473 (1051)
+.|++++.+++.- ...++..-+.|++++|.+..+...+ ++++|++++|.+|.++.+|.......+|+.|+|.+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec
Confidence 4455555554331 2334445566777777666665553 66777777777777777777666666777777776
Q ss_pred CCCCCCCC-CCCCCCccCEEEeeCCCCChhhhh-hhccCCCCcEEecCCCCCCCccCCCCCCCCCc-cccccCceecEEe
Q 048831 474 SENLIKTP-NFIEVPNLEVLDLKGCTSLREIHS-SLLRHNKLILLNLKGCTSLTTLPDCKNLSSLP-VTISSLKCLRTLK 550 (1051)
Q Consensus 474 ~~~l~~~~-~~~~l~~L~~L~L~~c~~l~~l~~-si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp-~~l~~l~~L~~L~ 550 (1051)
|....... .+.-++.||.|||+. +.+.+++. ++..-.++++|+|+++ .++.+- ..|..+.+|.+|.
T Consensus 135 N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N----------~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASN----------RITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccc----------cccccccccccccchheeee
Confidence 64332221 255666677777766 34455543 3334456777777652 222221 1344566677777
Q ss_pred eeCCCCCCcCchhhCCCCCCCEEEecCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCC
Q 048831 551 LSGCSKLKKFPAIVASMEDLSELYLDGTYITEV-PSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLE 629 (1051)
Q Consensus 551 Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~ 629 (1051)
|+.|....--+..+.++++|+.|+|..|.|+.+ -..+..|++|+.|.|..|....--...+..+.++++|+|..|+...
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 776655544445566677777777777766654 3346666677777776655433333456666777777777665554
Q ss_pred cCCcccCCCCCccEEEccCCCCcCC-CcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCC
Q 048831 630 NVPDTLGQVESLEELDISGTATRRP-PSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLC 708 (1051)
Q Consensus 630 ~lp~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~ 708 (1051)
--..++.++++|+.|+++.|.+..+ +++....++|+.|+|+.|+...-. +.++..+.
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~----------------------~~sf~~L~ 341 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD----------------------EGSFRVLS 341 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC----------------------hhHHHHHH
Confidence 4445566677777777777776665 445556677777777766544321 23455566
Q ss_pred CCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceec----cccccCCCCCCEEeccCCccccccCC----CCCCCc
Q 048831 709 SLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTL----PASISGLFNLKYLELEDCKRLQSLPQ----LPPNVI 780 (1051)
Q Consensus 709 ~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l----p~~~~~l~~L~~L~l~~c~~L~~lp~----lp~~L~ 780 (1051)
.|+.|+|+.|.+.. --...+..+++|++|+|++|.+... ...+.++++|+.|.+.+|+ +++||. -.++|+
T Consensus 342 ~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE 419 (873)
T KOG4194|consen 342 QLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALE 419 (873)
T ss_pred HhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccc
Confidence 67777777776531 1122344566777777777765521 2234566777777776664 666664 224566
Q ss_pred eEeecCCc
Q 048831 781 KVSVNGCA 788 (1051)
Q Consensus 781 ~L~i~~C~ 788 (1051)
.|++.+.+
T Consensus 420 ~LdL~~Na 427 (873)
T KOG4194|consen 420 HLDLGDNA 427 (873)
T ss_pred eecCCCCc
Confidence 66655543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=1.1e-26 Score=239.58 Aligned_cols=370 Identities=27% Similarity=0.365 Sum_probs=234.4
Q ss_pred CCcEEEecCccc---CCcccccCcCceEEEEcCCCCCCCCCCC-CCCCeeEEEcCccCcccccccccCCCCCCEEecCCC
Q 048831 399 NLRFLNIGNVQL---PEGLEYLSNKLRLLNWHRYPLKSLPSNL-QLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHS 474 (1051)
Q Consensus 399 ~Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~ 474 (1051)
.|..|.+++|.+ ..++..+. .+.+|..+++.+..+|+.+ .+..++.|+.+++++.++|+.+..+..|+.++.+++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~-~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLA-CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHhhhccc-ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 345566666553 33444443 4788888888888888888 788888888888888888888888888888888888
Q ss_pred CCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCC
Q 048831 475 ENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGC 554 (1051)
Q Consensus 475 ~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c 554 (1051)
.....+++++.+..|+.|+..+ ..+..+|.+++.+.+|..|++.+ +.++.+|...-+++.|++|+...|
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~----------n~l~~l~~~~i~m~~L~~ld~~~N 193 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEG----------NKLKALPENHIAMKRLKHLDCNSN 193 (565)
T ss_pred ceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccc----------cchhhCCHHHHHHHHHHhcccchh
Confidence 8877778888888888888776 45777888888888888887776 333444444334555666655542
Q ss_pred CCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCccccccc-CCCCCCEEeccCCCCCCcCCc
Q 048831 555 SKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSIN-GLKSLKTLNLSGCCKLENVPD 633 (1051)
Q Consensus 555 ~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~-~L~~L~~L~L~~c~~l~~lp~ 633 (1051)
.++.+|+.++.|.+|..|++..|.|..+| .|..+..|+.|.++.|. +..+|...+ ++++|.+|++..| +++..|+
T Consensus 194 -~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pd 269 (565)
T KOG0472|consen 194 -LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPD 269 (565)
T ss_pred -hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccc-ccccCch
Confidence 45555555666666666666666665555 45555555555555432 334443333 5555555555553 3445555
Q ss_pred ccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCC-------------------------------------
Q 048831 634 TLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPP------------------------------------- 676 (1051)
Q Consensus 634 ~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------------------------------------- 676 (1051)
.+.-+.+|+.||+++|.+..+|.+++++ .|+.|.+.||+..+
T Consensus 270 e~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred HHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 5555555555555555555555555555 55555554442100
Q ss_pred ---------------------------CCCcc-----------cCCcccc-----------------ccccCCCCccccC
Q 048831 677 ---------------------------STASC-----------HLNLPFN-----------------LMRKSSCPVALML 701 (1051)
Q Consensus 677 ---------------------------~~~~~-----------~~~~~~~-----------------~l~~~~~~~~~~~ 701 (1051)
.+|.. ...++.+ .+..........+
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~ 428 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVP 428 (565)
T ss_pred CCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccch
Confidence 00000 0000000 0111223333344
Q ss_pred CCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccc------------------------cccCCCC
Q 048831 702 PSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPA------------------------SISGLFN 757 (1051)
Q Consensus 702 ~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~------------------------~~~~l~~ 757 (1051)
..++.+++|..|+|++|-+.+ +|..++.+..|+.|+++.|.|..+|. .+.++.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHHhhhcceeeecccchhhh--cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 456788999999999998854 89999999999999999998876653 3677899
Q ss_pred CCEEeccCCccccccCCCC---CCCceEeecCCc
Q 048831 758 LKYLELEDCKRLQSLPQLP---PNVIKVSVNGCA 788 (1051)
Q Consensus 758 L~~L~l~~c~~L~~lp~lp---~~L~~L~i~~C~ 788 (1051)
|.+|++.+|. ++++|..- .+|++|.+.|.|
T Consensus 507 L~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 507 LTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cceeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence 9999998875 77777532 456666665543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=8.3e-26 Score=233.15 Aligned_cols=350 Identities=26% Similarity=0.306 Sum_probs=253.8
Q ss_pred chhhhcCCCCCcEEEecCccc---CCcccccCcCceEEEEcCCCCCCCCCCC-CCCCeeEEEcCccCcccccccccCCCC
Q 048831 390 SAKAFSLMTNLRFLNIGNVQL---PEGLEYLSNKLRLLNWHRYPLKSLPSNL-QLDKIVEFQMCYSHIEELWKGIKPLNT 465 (1051)
Q Consensus 390 ~~~~f~~~~~Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~ 465 (1051)
.+.+..++..++.|+.+.+++ |+.+..+. +++.|+++.+.++.+|+++ .+-.|..|+..+|++..+|.++..+.+
T Consensus 83 lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~ 161 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHNKLSELPEQIGSLI-SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSK 161 (565)
T ss_pred CCHHHHHHHHHHHhhcccchHhhccHHHhhhh-hhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHH
Confidence 345556666677777777664 44444443 5788888888888888888 788888888888999889988888888
Q ss_pred CCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccC---C----------CCC
Q 048831 466 LKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLP---D----------CKN 532 (1051)
Q Consensus 466 L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~---~----------~~~ 532 (1051)
|..+++.+|+....+|+..++..|++|+... ..+..+|+.++.+.+|..|++..+ .+..+| . .+.
T Consensus 162 l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 162 LSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ 239 (565)
T ss_pred HHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH
Confidence 8888888888777777777788888888766 467888888888888888877653 222233 2 233
Q ss_pred CCCCccccc-cCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCC------
Q 048831 533 LSSLPVTIS-SLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLV------ 605 (1051)
Q Consensus 533 l~~lp~~l~-~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~------ 605 (1051)
++.+|.... ++++|.+|||.+| ++++.|..+..+++|.+|++++|.|+.+|.+++++ .|+.|-+.+|+.-+
T Consensus 240 i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred HHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence 566777665 8999999999984 68899999999999999999999999999999999 89999888875210
Q ss_pred -------------------------------ccc----ccccCCCCCCEEecc--------------------------C
Q 048831 606 -------------------------------RLP----NSINGLKSLKTLNLS--------------------------G 624 (1051)
Q Consensus 606 -------------------------------~lp----~~i~~L~~L~~L~L~--------------------------~ 624 (1051)
..| ..+..+.+.+.|+++ .
T Consensus 318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence 000 011112233333332 2
Q ss_pred C-----------------------CCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcc
Q 048831 625 C-----------------------CKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASC 681 (1051)
Q Consensus 625 c-----------------------~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 681 (1051)
| +.+..+|..+..+++|..|++++|.+..+|..++.+..|+.|+++.|++...
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~l---- 473 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRML---- 473 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccc----
Confidence 2 2233344456667888888888888888888888888888888888754322
Q ss_pred cCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEE
Q 048831 682 HLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYL 761 (1051)
Q Consensus 682 ~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L 761 (1051)
|..+-.+..|+.+-.++|++.. .-++.+.++.+|..|+|.+|.+..+|..++++.+|+.|
T Consensus 474 -------------------P~~~y~lq~lEtllas~nqi~~-vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hL 533 (565)
T KOG0472|consen 474 -------------------PECLYELQTLETLLASNNQIGS-VDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHL 533 (565)
T ss_pred -------------------hHHHhhHHHHHHHHhccccccc-cChHHhhhhhhcceeccCCCchhhCChhhccccceeEE
Confidence 3333333445555666677753 23345888888899999888888888888999999999
Q ss_pred eccCCcc
Q 048831 762 ELEDCKR 768 (1051)
Q Consensus 762 ~l~~c~~ 768 (1051)
++++|+.
T Consensus 534 eL~gNpf 540 (565)
T KOG0472|consen 534 ELDGNPF 540 (565)
T ss_pred EecCCcc
Confidence 9988874
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=1.2e-21 Score=223.12 Aligned_cols=383 Identities=23% Similarity=0.247 Sum_probs=248.5
Q ss_pred CCCCCcEEEecCcccCCccccc--CcCceEEEEcCCCCCCCCCCC-CCCCeeEEEcCccCcccccccccCCCCCCEEecC
Q 048831 396 LMTNLRFLNIGNVQLPEGLEYL--SNKLRLLNWHRYPLKSLPSNL-QLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLS 472 (1051)
Q Consensus 396 ~~~~Lr~L~l~~~~l~~~~~~l--~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~ 472 (1051)
+.-+|+.|++++|++....... ..+|+.|.++.|-++++|.+. .+.+|.+|++.+|.+..+|.++..+++|++|+++
T Consensus 43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred heeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 3445999999999864433322 237999999999999999887 8999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccCEEEeeCC-------------------CCChhhhhhhccCCCCcEEecCC----------CCC
Q 048831 473 HSENLIKTPNFIEVPNLEVLDLKGC-------------------TSLREIHSSLLRHNKLILLNLKG----------CTS 523 (1051)
Q Consensus 473 ~~~~l~~~~~~~~l~~L~~L~L~~c-------------------~~l~~l~~si~~l~~L~~L~L~~----------c~~ 523 (1051)
.|.+...++-+..+..++.+..+++ .....++..+..+.+ .|+|++ |.+
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~ 200 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLAN 200 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccc
Confidence 9987666555555555555554444 333333333333333 244433 333
Q ss_pred CCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCC
Q 048831 524 LTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKN 603 (1051)
Q Consensus 524 l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~ 603 (1051)
++.+....+ .+....-..++|+.|+.++|......+. ..-.+|++++++.+.+..+|+|++.+.+|+.|...+|..
T Consensus 201 l~~l~c~rn--~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 201 LEVLHCERN--QLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred hhhhhhhhc--ccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence 332221000 1111112345677777777776643332 234689999999999999999999999999999988764
Q ss_pred CCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCccccc-c-cCCcEEEccCCCCCCCCCcc
Q 048831 604 LVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFL-M-KNLKTLSFSGCNGPPSTASC 681 (1051)
Q Consensus 604 l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~-l-~~L~~L~l~~~~~~~~~~~~ 681 (1051)
..+|..+...++|+.|.+..| .++.+|.....+++|++|++..|.+..+|..+.. + .+|..|+.+.++........
T Consensus 277 -~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~ 354 (1081)
T KOG0618|consen 277 -VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE 354 (1081)
T ss_pred -HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence 778888888889998888876 4677888888899999999999988888763322 1 22444554444432221100
Q ss_pred c-CCccccccccCCC-CccccCCCCCCCCCCCEEeccCCCCCCccccc-cccCCCcCcEEeccCCCceeccc--------
Q 048831 682 H-LNLPFNLMRKSSC-PVALMLPSLSGLCSLSKLDLSDCGLREGAILS-DICNLHSLKELYLSGNNFVTLPA-------- 750 (1051)
Q Consensus 682 ~-~~~~~~~l~~~~~-~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~-~l~~l~~L~~L~L~~n~l~~lp~-------- 750 (1051)
. ....+..++..++ ......+.+.++.+|+.|+|++|.+.. +|+ .+.++..|++|+|+||.++.||.
T Consensus 355 e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 355 ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRL 432 (1081)
T ss_pred chhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc--CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhh
Confidence 0 0111122222222 223345556777777777777776642 443 35566667777777776665554
Q ss_pred --------------cccCCCCCCEEeccCCccccc--cCC-CC-CCCceEeecCCcc
Q 048831 751 --------------SISGLFNLKYLELEDCKRLQS--LPQ-LP-PNVIKVSVNGCAS 789 (1051)
Q Consensus 751 --------------~~~~l~~L~~L~l~~c~~L~~--lp~-lp-~~L~~L~i~~C~~ 789 (1051)
.+.+++.|+.+|++.|. |+. +|+ +| ++|+.|++.|.+.
T Consensus 433 ~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 433 HTLRAHSNQLLSFPELAQLPQLKVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhcCCceeechhhhhcCcceEEecccch-hhhhhhhhhCCCcccceeeccCCcc
Confidence 44556677777776554 332 233 67 8899998888764
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=2.9e-20 Score=211.97 Aligned_cols=343 Identities=22% Similarity=0.243 Sum_probs=250.0
Q ss_pred CceEEEEcCCCCCCCCCCC-CCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCC
Q 048831 420 KLRLLNWHRYPLKSLPSNL-QLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCT 498 (1051)
Q Consensus 420 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~ 498 (1051)
+|+.|+++++.+...|..+ .+.+|+.|+++.|.+..+|....++.+|+++.|.++.....+..+..+.+|+.|+++++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N- 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN- 124 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh-
Confidence 5999999999999999999 79999999999999999999999999999999999876666667999999999999984
Q ss_pred CChhhhhhhccCCCCcEEecCCCCCCCccCCC----------CCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCC
Q 048831 499 SLREIHSSLLRHNKLILLNLKGCTSLTTLPDC----------KNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASME 568 (1051)
Q Consensus 499 ~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~----------~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~ 568 (1051)
.+..+|.-+..+..+..+..+++..+..++.. .....++..+..+.+ .|+|++|.... ..+.++.
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~ 199 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLA 199 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhcc
Confidence 56677777766666666666655332222211 111334445555555 57777765441 1122222
Q ss_pred --------------------CCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCC
Q 048831 569 --------------------DLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKL 628 (1051)
Q Consensus 569 --------------------~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l 628 (1051)
+|+.|+.+.|.+..+-. -..-.+|++++++++. +..+|++++.+.+|+.|....|..
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l- 276 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRL- 276 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeecc-ccccccceeeecchhh-hhcchHHHHhcccceEecccchhH-
Confidence 33334444444332110 1233578999999864 677889999999999999988765
Q ss_pred CcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCC--cccCCccccccccCCCCccccCCC-CC
Q 048831 629 ENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTA--SCHLNLPFNLMRKSSCPVALMLPS-LS 705 (1051)
Q Consensus 629 ~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~-l~ 705 (1051)
..+|..+..+.+|+.|.+..|.+..+|.....+++|++|++..|+...-.. ......+++.+.....+....|.. -.
T Consensus 277 ~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~ 356 (1081)
T KOG0618|consen 277 VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEEN 356 (1081)
T ss_pred HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccch
Confidence 778888889999999999999999999999999999999999987544322 111222334444444444443421 22
Q ss_pred CCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceecccc-ccCCCCCCEEeccCCccccccC
Q 048831 706 GLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPAS-ISGLFNLKYLELEDCKRLQSLP 773 (1051)
Q Consensus 706 ~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~c~~L~~lp 773 (1051)
.++.|+.|.+.+|.+.+..+| .+.++++|+.|+|++|.+.++|++ +.+++.|+.|+|++|+ |+.||
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp 423 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLP 423 (1081)
T ss_pred hhHHHHHHHHhcCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhh
Confidence 456799999999999876555 577899999999999999999984 5889999999999986 66655
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=2.5e-16 Score=186.94 Aligned_cols=256 Identities=24% Similarity=0.245 Sum_probs=136.6
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCC
Q 048831 420 KLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTS 499 (1051)
Q Consensus 420 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~ 499 (1051)
.-..|+++++.++++|..+. .+|+.|++.+|+++.+|.. +++|++|++++|+. ..+|.+ .++|+.|++.+|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~L-tsLP~l--p~sL~~L~Ls~N~- 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQL-TSLPVL--PPGLLELSIFSNP- 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCcc-CcccCc--ccccceeeccCCc-
Confidence 34567777777788887663 4778888888888877753 46777888877743 344432 3567777777653
Q ss_pred ChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCcc
Q 048831 500 LREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTY 579 (1051)
Q Consensus 500 l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~ 579 (1051)
+..+|.. ..+|+.|+++++ .++.+ |.. +++|++|+|++|. +..+|.. ..+|+.|++++|.
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N-~Lt~L---------P~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~ 333 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGN-QLTSL---------PVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ 333 (788)
T ss_pred hhhhhhc---hhhcCEEECcCC-ccccc---------ccc---ccccceeECCCCc-cccCCCC---cccccccccccCc
Confidence 4455432 234555665553 22222 211 3456666666553 3334432 1235555555555
Q ss_pred CcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccc
Q 048831 580 ITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIF 659 (1051)
Q Consensus 580 i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~ 659 (1051)
++.+|.. ..+|+.|+|++|. +..+|.. .. +|+.|++++|.+..+|..
T Consensus 334 L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~------------------------~L~~L~Ls~N~L~~LP~l-- 380 (788)
T PRK15387 334 LTSLPTL---PSGLQELSVSDNQ-LASLPTL---PS------------------------ELYKLWAYNNRLTSLPAL-- 380 (788)
T ss_pred ccccccc---ccccceEecCCCc-cCCCCCC---Cc------------------------ccceehhhccccccCccc--
Confidence 5555531 1345555555543 2233321 12 344444444444444432
Q ss_pred cccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEe
Q 048831 660 LMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELY 739 (1051)
Q Consensus 660 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~ 739 (1051)
+.+|+.|++++|..... |.. .++|+.|++++|.+.. +|.. +.+|+.|+
T Consensus 381 -~~~L~~LdLs~N~Lt~L-----------------------P~l---~s~L~~LdLS~N~Lss--IP~l---~~~L~~L~ 428 (788)
T PRK15387 381 -PSGLKELIVSGNRLTSL-----------------------PVL---PSELKELMVSGNRLTS--LPML---PSGLLSLS 428 (788)
T ss_pred -ccccceEEecCCcccCC-----------------------CCc---ccCCCEEEccCCcCCC--CCcc---hhhhhhhh
Confidence 23455555554432211 110 1356666666666642 4432 23566666
Q ss_pred ccCCCceeccccccCCCCCCEEeccCCcc
Q 048831 740 LSGNNFVTLPASISGLFNLKYLELEDCKR 768 (1051)
Q Consensus 740 L~~n~l~~lp~~~~~l~~L~~L~l~~c~~ 768 (1051)
+++|+++.+|..+.++++|+.|+|++|+.
T Consensus 429 Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 429 VYRNQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hccCcccccChHHhhccCCCeEECCCCCC
Confidence 66666666666666666777777766664
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=2.4e-15 Score=178.74 Aligned_cols=215 Identities=22% Similarity=0.213 Sum_probs=132.6
Q ss_pred cEEEecCcccCCcccccCcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCC
Q 048831 401 RFLNIGNVQLPEGLEYLSNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKT 480 (1051)
Q Consensus 401 r~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~ 480 (1051)
..|+++++.+..-+..++.+|+.|.+.+|.++.+|.. +++|++|++++|+++.+|.. .++|+.|++++|.. ..+
T Consensus 204 ~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L-~~L 277 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL-THL 277 (788)
T ss_pred cEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCch-hhh
Confidence 3455666554433334445677778877877777753 56788888888888777643 35777788877753 334
Q ss_pred CCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcC
Q 048831 481 PNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKF 560 (1051)
Q Consensus 481 ~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~ 560 (1051)
|. -..+|+.|++++| .+..+|.. .++|+.|+++++ .+..+|. . ..+|+.|++++|. +..+
T Consensus 278 p~--lp~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~---------l---p~~L~~L~Ls~N~-L~~L 337 (788)
T PRK15387 278 PA--LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDN-QLASLPA---------L---PSELCKLWAYNNQ-LTSL 337 (788)
T ss_pred hh--chhhcCEEECcCC-cccccccc---ccccceeECCCC-ccccCCC---------C---cccccccccccCc-cccc
Confidence 43 2356777888775 45566642 467888888774 3333332 1 2357778888765 4456
Q ss_pred chhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCC
Q 048831 561 PAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVES 640 (1051)
Q Consensus 561 p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~ 640 (1051)
|.. ..+|+.|+|++|.++.+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++|.. ..+|.. .++
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~L-t~LP~l---~s~ 403 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRL-TSLPVL---PSE 403 (788)
T ss_pred ccc---ccccceEecCCCccCCCCCC---Ccccceehhhccc-cccCccc---ccccceEEecCCcc-cCCCCc---ccC
Confidence 642 24788999999999888864 3567778888765 3345542 24566666666543 334432 234
Q ss_pred ccEEEccCCCCcCCC
Q 048831 641 LEELDISGTATRRPP 655 (1051)
Q Consensus 641 L~~L~l~~~~~~~~~ 655 (1051)
|+.|++++|.+..+|
T Consensus 404 L~~LdLS~N~LssIP 418 (788)
T PRK15387 404 LKELMVSGNRLTSLP 418 (788)
T ss_pred CCEEEccCCcCCCCC
Confidence 555666655555444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=8.4e-16 Score=184.04 Aligned_cols=248 Identities=21% Similarity=0.257 Sum_probs=120.9
Q ss_pred CcEEEecCcccCCcccccCcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCC
Q 048831 400 LRFLNIGNVQLPEGLEYLSNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIK 479 (1051)
Q Consensus 400 Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~ 479 (1051)
...|+++++.+...+..++..++.|++++|.++++|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|... .
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~ 255 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-E 255 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-c
Confidence 3445555554443333344556666666666666665543 356666666666665554432 24555555555432 2
Q ss_pred CCC-CCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCC
Q 048831 480 TPN-FIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLK 558 (1051)
Q Consensus 480 ~~~-~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~ 558 (1051)
+|. +. .+|+.|++++| .+..+|..+. ++|++|++++|. +.
T Consensus 256 LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~-----------------------------------~sL~~L~Ls~N~-Lt 296 (754)
T PRK15370 256 LPERLP--SALQSLDLFHN-KISCLPENLP-----------------------------------EELRYLSVYDNS-IR 296 (754)
T ss_pred CChhHh--CCCCEEECcCC-ccCccccccC-----------------------------------CCCcEEECCCCc-cc
Confidence 222 11 24455555432 3333443322 245555555542 22
Q ss_pred cCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCC
Q 048831 559 KFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQV 638 (1051)
Q Consensus 559 ~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l 638 (1051)
.+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|.. ..+|..+ .
T Consensus 297 ~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N~L-~~LP~~l--p 366 (754)
T PRK15370 297 TLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENA-LTSLPASLP--PELQVLDVSKNQI-TVLPETL--P 366 (754)
T ss_pred cCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCc-cccCChhhc--CcccEEECCCCCC-CcCChhh--c
Confidence 3333221 245555555555555544332 455555555553 233444332 4566666665532 3344433 2
Q ss_pred CCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCC
Q 048831 639 ESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDC 718 (1051)
Q Consensus 639 ~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 718 (1051)
++|+.|++++|.+..+|..+. .+|+.|++++|..... +. .++...+.++++..|+|.+|
T Consensus 367 ~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~L-P~------------------sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 367 PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRL-PE------------------SLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccC-ch------------------hHHHHhhcCCCccEEEeeCC
Confidence 456666666666666655443 2466666666543211 00 01222334466777777777
Q ss_pred CCC
Q 048831 719 GLR 721 (1051)
Q Consensus 719 ~l~ 721 (1051)
++.
T Consensus 426 pls 428 (754)
T PRK15370 426 PFS 428 (754)
T ss_pred Ccc
Confidence 765
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=1.2e-15 Score=182.80 Aligned_cols=248 Identities=19% Similarity=0.266 Sum_probs=176.3
Q ss_pred CcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCC
Q 048831 418 SNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGC 497 (1051)
Q Consensus 418 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c 497 (1051)
.++...|+++++.++++|..+ +.+|+.|++++|+++.+|..+. .+|++|++++|.. ..+|.
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~--------------- 237 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPA--------------- 237 (754)
T ss_pred ccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCCh---------------
Confidence 345678999999999999865 4678889999988888887653 4777777777643 23332
Q ss_pred CCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecC
Q 048831 498 TSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDG 577 (1051)
Q Consensus 498 ~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~ 577 (1051)
.+. .+|+.|+|++|. +..+|..+ ..+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 238 --------~l~--~~L~~L~Ls~N~----------L~~LP~~l--~s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 238 --------TLP--DTIQEMELSINR----------ITELPERL--PSALQSLDLFHN-KISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred --------hhh--ccccEEECcCCc----------cCcCChhH--hCCCCEEECcCC-ccCccccccC--CCCcEEECCC
Confidence 111 234444444421 12223222 246888888865 4556776553 5899999999
Q ss_pred ccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcc
Q 048831 578 TYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSS 657 (1051)
Q Consensus 578 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 657 (1051)
|.++.+|..+. ++|+.|++++|.. ..+|..+ .++|+.|++++|.. ..+|..+. ++|+.|++++|.+..+|..
T Consensus 293 N~Lt~LP~~lp--~sL~~L~Ls~N~L-t~LP~~l--~~sL~~L~Ls~N~L-t~LP~~l~--~sL~~L~Ls~N~L~~LP~~ 364 (754)
T PRK15370 293 NSIRTLPAHLP--SGITHLNVQSNSL-TALPETL--PPGLKTLEAGENAL-TSLPASLP--PELQVLDVSKNQITVLPET 364 (754)
T ss_pred CccccCcccch--hhHHHHHhcCCcc-ccCCccc--cccceeccccCCcc-ccCChhhc--CcccEEECCCCCCCcCChh
Confidence 99999987654 5799999999764 4566544 37899999999864 55776553 7999999999999988876
Q ss_pred cccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCcccccc----ccCCC
Q 048831 658 IFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSD----ICNLH 733 (1051)
Q Consensus 658 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~----l~~l~ 733 (1051)
+ .++|+.|++++|..... |+.+. .+|+.|++++|++.. +|.. ...++
T Consensus 365 l--p~~L~~LdLs~N~Lt~L-----------------------P~~l~--~sL~~LdLs~N~L~~--LP~sl~~~~~~~~ 415 (754)
T PRK15370 365 L--PPTITTLDVSRNALTNL-----------------------PENLP--AALQIMQASRNNLVR--LPESLPHFRGEGP 415 (754)
T ss_pred h--cCCcCEEECCCCcCCCC-----------------------CHhHH--HHHHHHhhccCCccc--CchhHHHHhhcCC
Confidence 6 47999999999875422 32222 368999999999863 4543 44568
Q ss_pred cCcEEeccCCCce
Q 048831 734 SLKELYLSGNNFV 746 (1051)
Q Consensus 734 ~L~~L~L~~n~l~ 746 (1051)
++..|+|.+|.+.
T Consensus 416 ~l~~L~L~~Npls 428 (754)
T PRK15370 416 QPTRIIVEYNPFS 428 (754)
T ss_pred CccEEEeeCCCcc
Confidence 8999999999886
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=2.6e-16 Score=144.55 Aligned_cols=162 Identities=28% Similarity=0.418 Sum_probs=107.7
Q ss_pred CceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEec
Q 048831 543 LKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNL 622 (1051)
Q Consensus 543 l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 622 (1051)
+.+.+.|.|++| ++..+|+.+..+.+|+.|++.+|+|+++|.+++.+++|++|++.-|. +..+|..++.++.|+.|++
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhc
Confidence 666777777774 56667777777888888888888888888888888888888777543 5667777777777777777
Q ss_pred cCCCCCC-cCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccC
Q 048831 623 SGCCKLE-NVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALML 701 (1051)
Q Consensus 623 ~~c~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 701 (1051)
.+|+..+ .+|..+-.|+.|+.|++++|.+..+|.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~--------------------------------------------- 144 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP--------------------------------------------- 144 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCCh---------------------------------------------
Confidence 7665443 455555555555555555555544443
Q ss_pred CCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccC
Q 048831 702 PSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISG 754 (1051)
Q Consensus 702 ~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~ 754 (1051)
.++++++|+.|.+.+|.+.+ +|..++.+..|++|++.+|.++-+|..+++
T Consensus 145 -dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 145 -DVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred -hhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 34444455555555555532 677777777777777777777777765543
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=5.3e-16 Score=142.56 Aligned_cols=169 Identities=27% Similarity=0.436 Sum_probs=105.1
Q ss_pred CCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCC
Q 048831 432 KSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHN 511 (1051)
Q Consensus 432 ~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~ 511 (1051)
..+|..|++.++..|.+++|++..+|.++..+.+|++|++++|+ +.++|.++..++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq------------------------ie~lp~~issl~ 79 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ------------------------IEELPTSISSLP 79 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch------------------------hhhcChhhhhch
Confidence 34555556666666666666666665555555555555555443 444444455555
Q ss_pred CCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCC-cCchhhCCCCCCCEEEecCccCcccCccccCC
Q 048831 512 KLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLK-KFPAIVASMEDLSELYLDGTYITEVPSSIELL 590 (1051)
Q Consensus 512 ~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~-~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 590 (1051)
+|+.|++.- +.+..+|..++.++-|++|+|++|+..+ .+|..+..|..|+-|+++.|.++-+|..++++
T Consensus 80 klr~lnvgm----------nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~l 149 (264)
T KOG0617|consen 80 KLRILNVGM----------NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKL 149 (264)
T ss_pred hhhheecch----------hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhh
Confidence 555555432 2334456667777778888877766443 46777777778888888888888888888888
Q ss_pred CCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccC
Q 048831 591 TGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLG 636 (1051)
Q Consensus 591 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~ 636 (1051)
++|+.|.++.|. +-.+|..++.|+.|+.|++.+|. +..+|..++
T Consensus 150 t~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnr-l~vlppel~ 193 (264)
T KOG0617|consen 150 TNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNR-LTVLPPELA 193 (264)
T ss_pred cceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccce-eeecChhhh
Confidence 888888888754 44556666666666666665543 334444433
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=4.1e-15 Score=154.67 Aligned_cols=244 Identities=20% Similarity=0.219 Sum_probs=146.8
Q ss_pred cCcccCCcccccCcCceEEEEcCCCCCCCCCCC--CCCCeeEEEcCccCcccc-cccccCCCCCCEEecCCCCCCCCCCC
Q 048831 406 GNVQLPEGLEYLSNKLRLLNWHRYPLKSLPSNL--QLDKIVEFQMCYSHIEEL-WKGIKPLNTLKVMKLSHSENLIKTPN 482 (1051)
Q Consensus 406 ~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~L~~~~~l~~~~~ 482 (1051)
++-.+.+.+..+|.....+.+..|.++++|+.. .+.+|+.|++++|.|+.+ |..++.++.|..|.+.++..+..+|.
T Consensus 54 r~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 54 RGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred cCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 334455666777788888999999999999865 788999999999999887 44578888888887777666666664
Q ss_pred --CCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCC---------------------------CC-C
Q 048831 483 --FIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPD---------------------------CK-N 532 (1051)
Q Consensus 483 --~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~---------------------------~~-~ 532 (1051)
|.++..|+.|.+.-|.---.....+..+++|..|.+.+. .++.++. .. .
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 777777777766654332223334445555555554431 0111100 00 0
Q ss_pred CCCCccccccCceecEEeee-------------------------CCCCCCcCc-hhhCCCCCCCEEEecCccCccc-Cc
Q 048831 533 LSSLPVTISSLKCLRTLKLS-------------------------GCSKLKKFP-AIVASMEDLSELYLDGTYITEV-PS 585 (1051)
Q Consensus 533 l~~lp~~l~~l~~L~~L~Ls-------------------------~c~~~~~~p-~~~~~l~~L~~L~L~~~~i~~l-p~ 585 (1051)
....|..++-+....-..+. .|......| ..+..+++|++|+|++|.|+.+ +.
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 00111111111111111110 111111122 2356677777777777777766 34
Q ss_pred cccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCC
Q 048831 586 SIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTA 650 (1051)
Q Consensus 586 ~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 650 (1051)
++..+..++.|.|..|+.-..-...+.++..|++|+|.+|+.....|-.|..+.+|.+|.+-.|.
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 57777777777777765433333456677777777777777766667777777777777776665
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.42 E-value=1.8e-14 Score=161.13 Aligned_cols=263 Identities=24% Similarity=0.235 Sum_probs=153.1
Q ss_pred CCCCccCEEEeeCCCC----ChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCc
Q 048831 484 IEVPNLEVLDLKGCTS----LREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKK 559 (1051)
Q Consensus 484 ~~l~~L~~L~L~~c~~----l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~ 559 (1051)
..+.+|+.|++++|.. ...++..+...+.|+.|+++++..- ..+ ..+..++..+..+++|+.|++++|.....
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~-~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG-RIP--RGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC-Ccc--hHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3445566777766542 2345556666677777777664321 100 11233444566677888888888776655
Q ss_pred CchhhCCCCC---CCEEEecCccCcc-----cCccccCC-CCCCEEecCCCCCCC----cccccccCCCCCCEEeccCCC
Q 048831 560 FPAIVASMED---LSELYLDGTYITE-----VPSSIELL-TGLELLNLNDCKNLV----RLPNSINGLKSLKTLNLSGCC 626 (1051)
Q Consensus 560 ~p~~~~~l~~---L~~L~L~~~~i~~-----lp~~i~~l-~~L~~L~L~~~~~l~----~lp~~i~~L~~L~~L~L~~c~ 626 (1051)
.+..+..+.+ |++|++++|.+.. +...+..+ ++|+.|++++|.... .++..+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 5555544444 8888888877762 33345556 778888888876542 234445666778888887776
Q ss_pred CCC----cCCcccCCCCCccEEEccCCCCcCC-----CcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCc
Q 048831 627 KLE----NVPDTLGQVESLEELDISGTATRRP-----PSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPV 697 (1051)
Q Consensus 627 ~l~----~lp~~l~~l~~L~~L~l~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 697 (1051)
... .++..+..+++|++|++++|.+... ...+..+++|+.|++++|........
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~----------------- 239 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA----------------- 239 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH-----------------
Confidence 542 2333445556778888877765422 33445567777777777653321000
Q ss_pred cccCCC-CCCCCCCCEEeccCCCCCCc---cccccccCCCcCcEEeccCCCceec-----cccccCC-CCCCEEeccCCc
Q 048831 698 ALMLPS-LSGLCSLSKLDLSDCGLREG---AILSDICNLHSLKELYLSGNNFVTL-----PASISGL-FNLKYLELEDCK 767 (1051)
Q Consensus 698 ~~~~~~-l~~l~~L~~L~L~~~~l~~~---~~~~~l~~l~~L~~L~L~~n~l~~l-----p~~~~~l-~~L~~L~l~~c~ 767 (1051)
.+... ....+.|+.|++++|.+.+. .+...+..+++|+.+++++|.+..- ...+... +.|+.|++.+++
T Consensus 240 -~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 240 -ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred -HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 00000 01245777778877776532 2234455567777888877777632 2334444 677777776654
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.38 E-value=1.9e-11 Score=157.03 Aligned_cols=298 Identities=16% Similarity=0.154 Sum_probs=181.1
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISL 98 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 98 (1051)
.+|+.+..+|-|+.-++.+.+ . ...+++.|.|++|.||||++..+..+ ++.+.|+. +...... ....
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~----~-~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~~d~~---~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG----A-NNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDESDNQ---PERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhc----c-cCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCcccCC---HHHH
Confidence 467777889999865555532 2 35689999999999999999998853 23566764 4332211 1223
Q ss_pred HHHHHHHHhccCCC------------ccccchhhHHHHHHhhC--CCeEEEEEeCCCCHH------HHHHHhcCCCCCCC
Q 048831 99 QKQLLSNLLKLGDI------------SIWHVDDGINIIGSRLR--QQKVLLVIDDVADVE------QLQSLAGKRDWFGL 158 (1051)
Q Consensus 99 ~~~ll~~l~~~~~~------------~~~~~~~~~~~i~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~ 158 (1051)
...++..+...... ...+.......+...+. +.+++|||||+...+ .+..+... ..+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~ 151 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPE 151 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCC
Confidence 33444444211100 00111112222333332 688999999995432 23333332 346
Q ss_pred CCEEEEEeCChhhhHh--hCCCCcceEEcC----CCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 159 GSRILITTRDKQLLVA--HEVDEEHILNLD----VLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 159 gs~IiiTTR~~~~~~~--~~~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
+.++|||||....... .... ....++. +|+.+|+.++|...... .. ..+.+.+|.+.++|+|+++..+
T Consensus 152 ~~~lv~~sR~~~~~~~~~l~~~-~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~----~~~~~~~l~~~t~Gwp~~l~l~ 225 (903)
T PRK04841 152 NLTLVVLSRNLPPLGIANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQRLSS-PI----EAAESSRLCDDVEGWATALQLI 225 (903)
T ss_pred CeEEEEEeCCCCCCchHhHHhc-CcceecCHHhCCCCHHHHHHHHHhccCC-CC----CHHHHHHHHHHhCChHHHHHHH
Confidence 6788899998432111 1111 1145555 99999999999765421 11 2255788999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHhhcCCCchHHHHHH-HhccCCChhcccceeeeecccCCCCHHHHHHHHhhcCCCcchhhhHh
Q 048831 233 GSFLIGRSVDQWRSALERLKRDPSNKIMSILQ-ISFDGLQDSEKKIFLDVACFFKQKNRDYVTKILEGCGFFPVIGIEVL 311 (1051)
Q Consensus 233 g~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~-~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L 311 (1051)
+..+...... .......+...+...+...+. ..++.||++.++.++.+|++. .++.+.+..+.... .....++.|
T Consensus 226 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l 301 (903)
T PRK04841 226 ALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEEL 301 (903)
T ss_pred HHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHH
Confidence 8777543210 111122222222334555443 348899999999999999986 66666555554321 235568899
Q ss_pred hccCceeE-eC--CCceehhHHHHHHHHHHHhhc
Q 048831 312 IERSLLTV-DD--YNTLGMHDLLQELGQLIVTRQ 342 (1051)
Q Consensus 312 ~~~sLi~~-~~--~~~~~mHdll~~~~~~i~~~e 342 (1051)
.+.+++.. .+ ...|..|++++++.+.....+
T Consensus 302 ~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 302 ERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 99999653 32 236889999999999877544
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=8.7e-14 Score=144.96 Aligned_cols=146 Identities=21% Similarity=0.276 Sum_probs=102.9
Q ss_pred EEEcCCCCCCCCCCCCCCCeeEEEcCccCccccccc-ccCCCCCCEEecCCCCCCCCCCC-CCCCCccCEEEeeCCCCCh
Q 048831 424 LNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKG-IKPLNTLKVMKLSHSENLIKTPN-FIEVPNLEVLDLKGCTSLR 501 (1051)
Q Consensus 424 L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~L~~c~~l~ 501 (1051)
.+.++-.++++|.++ +..-+++.|..|.|+.+|.+ ++.+++|+.|||++|....--|+ |.++++|-.|-+.++..+.
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 345566778888776 45678999999999999987 89999999999999976554454 8888888888888877777
Q ss_pred hhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCc
Q 048831 502 EIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYIT 581 (1051)
Q Consensus 502 ~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~ 581 (1051)
.+|... |+.+..|+.|.+.-|...-.....+..+++|..|.+..|.+.
T Consensus 130 ~l~k~~--------------------------------F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 130 DLPKGA--------------------------------FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred hhhhhH--------------------------------hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 777532 233555555555554444444555666666777777777777
Q ss_pred ccCc-cccCCCCCCEEecCCCC
Q 048831 582 EVPS-SIELLTGLELLNLNDCK 602 (1051)
Q Consensus 582 ~lp~-~i~~l~~L~~L~L~~~~ 602 (1051)
.++. ++..+..++.+.+..+.
T Consensus 178 ~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 178 SICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhccccccchhccchHhhhcCc
Confidence 6665 56666666666665544
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=2.2e-13 Score=152.27 Aligned_cols=240 Identities=22% Similarity=0.182 Sum_probs=129.9
Q ss_pred hhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCC------CcCchhhCCCCCCCEEEecCc
Q 048831 505 SSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKL------KKFPAIVASMEDLSELYLDGT 578 (1051)
Q Consensus 505 ~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~------~~~p~~~~~l~~L~~L~L~~~ 578 (1051)
.-+..+..|+.|++++|.- .. .....++..+...++|++|+++++... ..++..+..+++|++|+++++
T Consensus 17 ~~~~~l~~L~~l~l~~~~l-~~----~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTL-GE----EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHHHHhhccEEeecCCCC-cH----HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 3444555678888877531 11 011233444555667778887776543 123345566777777777777
Q ss_pred cCc-ccCccccCC---CCCCEEecCCCCCCC----cccccccCC-CCCCEEeccCCCCCC----cCCcccCCCCCccEEE
Q 048831 579 YIT-EVPSSIELL---TGLELLNLNDCKNLV----RLPNSINGL-KSLKTLNLSGCCKLE----NVPDTLGQVESLEELD 645 (1051)
Q Consensus 579 ~i~-~lp~~i~~l---~~L~~L~L~~~~~l~----~lp~~i~~L-~~L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~ 645 (1051)
.+. ..+..+..+ ++|++|++++|.... .+...+..+ ++|+.|++++|.... .++..+..+++|++|+
T Consensus 92 ~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 92 ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171 (319)
T ss_pred CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence 765 233333333 337777777765431 222334455 677777777776542 2333455566677777
Q ss_pred ccCCCCcC-----CCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCC
Q 048831 646 ISGTATRR-----PPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGL 720 (1051)
Q Consensus 646 l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l 720 (1051)
+++|.+.. ++..+..+++|+.|++++|...... ...+...+..+++|+.|++++|.+
T Consensus 172 l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~------------------~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG------------------ASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred CcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH------------------HHHHHHHhcccCCCCEEecCCCcC
Confidence 77776552 2233344456777777766532110 011122344556677777777766
Q ss_pred CCccccccccC----CCcCcEEeccCCCce-----eccccccCCCCCCEEeccCCc
Q 048831 721 REGAILSDICN----LHSLKELYLSGNNFV-----TLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 721 ~~~~~~~~l~~----l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
.+..+...... .+.|+.|++++|.++ .++..+..+++|+.|++++|.
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 54222221111 356777777776664 233344555666666666665
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.29 E-value=2.4e-12 Score=156.91 Aligned_cols=225 Identities=25% Similarity=0.325 Sum_probs=126.5
Q ss_pred CceEEEEcCCC--CCCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCCCC-CCCCCccCEEEeeC
Q 048831 420 KLRLLNWHRYP--LKSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKTPN-FIEVPNLEVLDLKG 496 (1051)
Q Consensus 420 ~Lr~L~l~~~~--l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~L~~ 496 (1051)
+|+.|-+.++. +..++..| +..++.|++|||++|..+..+|. ++++.+||+|+|++
T Consensus 546 ~L~tLll~~n~~~l~~is~~f---------------------f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEF---------------------FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred ccceEEEeecchhhhhcCHHH---------------------HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 58888887774 45555433 34455555556655555555554 55666666666665
Q ss_pred CCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCC--CCCcCchhhCCCCCCCEEE
Q 048831 497 CTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCS--KLKKFPAIVASMEDLSELY 574 (1051)
Q Consensus 497 c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~--~~~~~p~~~~~l~~L~~L~ 574 (1051)
+.+..+|.++.++.+|.+|++.....+... |.....+.+|++|.+.... .....-..+.++++|+.|.
T Consensus 605 -t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~---------~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 605 -TGISHLPSGLGNLKKLIYLNLEVTGRLESI---------PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred -CCccccchHHHHHHhhheeccccccccccc---------cchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 556677777777777777777765544443 2233447777777776543 1111223334455555555
Q ss_pred ecCccCcccCccccCCCCCC----EEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCC------CCCccEE
Q 048831 575 LDGTYITEVPSSIELLTGLE----LLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQ------VESLEEL 644 (1051)
Q Consensus 575 L~~~~i~~lp~~i~~l~~L~----~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~------l~~L~~L 644 (1051)
...... .+-..+..+++|. .+.+.+ ......+..+..+.+|+.|.+.+|...+........ ++++..+
T Consensus 675 ~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 675 ITISSV-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred eecchh-HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 544333 1112222233333 233322 334455667888899999999988876543322111 2344444
Q ss_pred EccCCCCcCCCcccccccCCcEEEccCCCCCCC
Q 048831 645 DISGTATRRPPSSIFLMKNLKTLSFSGCNGPPS 677 (1051)
Q Consensus 645 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 677 (1051)
.+.++.....+.+....++|+.|.+..|+....
T Consensus 753 ~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 753 SILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred HhhccccccccchhhccCcccEEEEeccccccc
Confidence 444454445555556667777777777665544
No 27
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.20 E-value=2.1e-10 Score=126.84 Aligned_cols=271 Identities=18% Similarity=0.138 Sum_probs=151.0
Q ss_pred CCccccchhHHHHHHHHhcCC---CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHH
Q 048831 24 VKELVGIESRLEKLRFLMGTG---STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQK 100 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 100 (1051)
..+|||++..+++|..++... ....+.+.|+|++|+|||+||+++++.+...+. ....... ... ..+ .
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~-~~~---~~l-~ 73 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL-EKP---GDL-A 73 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh-cCc---hhH-H
Confidence 457999999999998888631 233566889999999999999999998754321 1111000 000 111 1
Q ss_pred HHHHHHhccCCCcccc----chhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhHhhC
Q 048831 101 QLLSNLLKLGDISIWH----VDDGINIIGSRLRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQLLVAHE 176 (1051)
Q Consensus 101 ~ll~~l~~~~~~~~~~----~~~~~~~i~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~ 176 (1051)
..+..+....-.-+.+ .....+.+...+.+.+..+|+|+..+..++.... .+..-|..||+...+.....
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL------PPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecC------CCeEEEEecCCccccCHHHH
Confidence 1122211000000000 0111223334444444555555544433332111 12445556777654333211
Q ss_pred CCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHHHhc------C-C--CHHHHHHH
Q 048831 177 VDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGSFLI------G-R--SVDQWRSA 247 (1051)
Q Consensus 177 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~~L~------~-~--~~~~w~~~ 247 (1051)
..-...+++++++.+|..+++.+.+...... -..+....|++.++|.|-.+..++..+. + . +.+..+
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~-- 223 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL-- 223 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH--
Confidence 1111268999999999999999887543322 2236678899999999976655554321 0 0 111111
Q ss_pred HHHhhcCCCchHHHHHHHhccCCChhccccee-eeecccCC-CCHHHHHHHHhhcCCCcchhhh-HhhccCceeEeCCC
Q 048831 248 LERLKRDPSNKIMSILQISFDGLQDSEKKIFL-DVACFFKQ-KNRDYVTKILEGCGFFPVIGIE-VLIERSLLTVDDYN 323 (1051)
Q Consensus 248 l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~~ 323 (1051)
.....+...|.+++..++..+. .++.+..+ ...+.+...+..........++ .|++++||.....+
T Consensus 224 ----------~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 224 ----------KALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred ----------HHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCch
Confidence 1222255667888888777665 33444332 4667777777665555555577 69999999755444
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.20 E-value=5.8e-11 Score=131.84 Aligned_cols=281 Identities=17% Similarity=0.116 Sum_probs=153.7
Q ss_pred CCCCCCccccchhHHHHHHHHhcC---CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGT---GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVI 96 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 96 (1051)
.|....+|+|++..++.+..++.. .....+.+.|+|++|+||||+|+.+++.+...+. + .... .... .
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~-~~~~-~~~~----~ 90 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---I-TSGP-ALEK----P 90 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---E-Eecc-cccC----h
Confidence 456778999999999999887753 2234567899999999999999999998764321 1 1111 0011 1
Q ss_pred HHHHHHHHHHhccCCCccccch----hhHHHHHHhhCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhh
Q 048831 97 SLQKQLLSNLLKLGDISIWHVD----DGINIIGSRLRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQLL 172 (1051)
Q Consensus 97 ~l~~~ll~~l~~~~~~~~~~~~----~~~~~i~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~ 172 (1051)
.....++..+....-.-+.+.+ ...+.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+.
T Consensus 91 ~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~------l~~~~li~at~~~~~l~ 164 (328)
T PRK00080 91 GDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLD------LPPFTLIGATTRAGLLT 164 (328)
T ss_pred HHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeec------CCCceEEeecCCcccCC
Confidence 1111222221100000000000 1111222333333444444443322221110 11234455666654433
Q ss_pred HhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCHHHHHHHHHHhh
Q 048831 173 VAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGSFLIGRSVDQWRSALERLK 252 (1051)
Q Consensus 173 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~~L~~~~~~~w~~~l~~l~ 252 (1051)
......-...+++++++.++..+++.+.+...... ...+.+..|+++|+|.|-.+..+...+. .|.... .-.
T Consensus 165 ~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~-~~~ 236 (328)
T PRK00080 165 SPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK-GDG 236 (328)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc-CCC
Confidence 22111111268999999999999999887544332 2336788999999999965555544321 111100 000
Q ss_pred cCC---CchHHHHHHHhccCCChhccccee-eeecccCC-CCHHHHHHHHhhcCCCcchhhh-HhhccCceeEeCCC
Q 048831 253 RDP---SNKIMSILQISFDGLQDSEKKIFL-DVACFFKQ-KNRDYVTKILEGCGFFPVIGIE-VLIERSLLTVDDYN 323 (1051)
Q Consensus 253 ~~~---~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~~ 323 (1051)
... -......+...+..|++.++..+. ....|..+ ...+.+...+.......+..++ .|++.+||.....+
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 313 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRG 313 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCch
Confidence 000 112234456677888888877775 44455443 4777887777665555555677 89999999755433
No 29
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.18 E-value=2e-10 Score=140.97 Aligned_cols=329 Identities=16% Similarity=0.207 Sum_probs=192.6
Q ss_pred ccccchhHHHHHHHHhcCCC-CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcC---CCHHHHHHH
Q 048831 26 ELVGIESRLEKLRFLMGTGS-TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKE---GSVISLQKQ 101 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~---~~~~~l~~~ 101 (1051)
.++||+.+++.|...+.... +...++.+.|.+|||||+|+++|...+.+++.. |+...-..+... ..+.+..++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~--~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGY--FIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcccee--eeHhhcccccCCCchHHHHHHHHH
Confidence 37999999999999887633 456799999999999999999999987766221 111000001110 011222222
Q ss_pred HHHHHhccCC------------------Cc-c---------------------ccchh-----hHHHHHHhh-CCCeEEE
Q 048831 102 LLSNLLKLGD------------------IS-I---------------------WHVDD-----GINIIGSRL-RQQKVLL 135 (1051)
Q Consensus 102 ll~~l~~~~~------------------~~-~---------------------~~~~~-----~~~~i~~~l-~~k~~Ll 135 (1051)
+..++....+ .. . ..... ....+.... +.+++++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 2222211100 00 0 00000 112222233 3469999
Q ss_pred EEeCC-CCHHH----HHHHhcCCC---CCCCCCEEEEEeCChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCC
Q 048831 136 VIDDV-ADVEQ----LQSLAGKRD---WFGLGSRILITTRDKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQP 207 (1051)
Q Consensus 136 VlDdv-~~~~~----~~~l~~~~~---~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 207 (1051)
|+||+ |-+.. ++.++.... ......-.+.|.+...-...........+.+.||+..+...+........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--- 235 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--- 235 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---
Confidence 99999 44332 333333321 00012223334444321112223333489999999999999998765321
Q ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHhcCC-------CHHHHHHHHHHhhcCC-CchHHHHHHHhccCCChhccccee
Q 048831 208 VEEYVELSKRVLNYASGLPLALKVLGSFLIGR-------SVDQWRSALERLKRDP-SNKIMSILQISFDGLQDSEKKIFL 279 (1051)
Q Consensus 208 ~~~~~~~~~~i~~~~~G~PLal~~~g~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~sy~~L~~~~k~~fl 279 (1051)
.....+..+.|++++.|+|+.+..+-..+... ....|..-...+...+ ...+...+..-.+.||+..|+++.
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22233678899999999999999999988653 3455655554443322 233566788899999999999999
Q ss_pred eeecccCCCCHHHHHHHHhhcCCCcchhhhHhhccCceeEeC----------CC-ceehhHHHHHHHHHHHhhcCCCCCC
Q 048831 280 DVACFFKQKNRDYVTKILEGCGFFPVIGIEVLIERSLLTVDD----------YN-TLGMHDLLQELGQLIVTRQSPEEPG 348 (1051)
Q Consensus 280 ~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~~----------~~-~~~mHdll~~~~~~i~~~e~~~~~~ 348 (1051)
..||+.+.++.+.+..++.........++-.....++|.+.. .. +-..|+.+|+.+.....+.
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~------ 389 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES------ 389 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh------
Confidence 999999999999988888753333333333333444444421 11 3367888888887654432
Q ss_pred CcccccchhHHHHHHhcCC
Q 048831 349 KRSRLWRQEEVRHVLTKNA 367 (1051)
Q Consensus 349 ~~~~l~~~~~i~~~l~~~~ 367 (1051)
.|...|-.+-..+..+.
T Consensus 390 --~rq~~H~~i~~lL~~~~ 406 (849)
T COG3899 390 --QRQYLHLRIGQLLEQNI 406 (849)
T ss_pred --hHHHHHHHHHHHHHHhC
Confidence 22334445555555543
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.17 E-value=9.6e-10 Score=126.40 Aligned_cols=252 Identities=16% Similarity=0.168 Sum_probs=148.5
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCC--CCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc-ceEEEeehhhhhhcCCCH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTG--STDVRMIGIWGMGGLGKTTLARVVYDLISHEFY-ASSFLADVRERFEKEGSV 95 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~ 95 (1051)
.+...++.++||+.++++|...+... +.....+.|+|++|+|||++++.+++.+..... ..+...++.... . .
T Consensus 24 ~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~---~-~ 99 (394)
T PRK00411 24 EPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR---T-R 99 (394)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC---C-H
Confidence 45557788999999999999888542 234456889999999999999999998766542 222233333221 1 2
Q ss_pred HHHHHHHHHHHhccCCC-ccccchhhHHHHHHhhC--CCeEEEEEeCCCCHH------HHHHHhcCCCCCCCCCE--EEE
Q 048831 96 ISLQKQLLSNLLKLGDI-SIWHVDDGINIIGSRLR--QQKVLLVIDDVADVE------QLQSLAGKRDWFGLGSR--ILI 164 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~-~~~~~~~~~~~i~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--Iii 164 (1051)
..+..+++.++...... ...+..+....+.+.++ +++++||||+++... .+..+....... ++++ +|.
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~ 178 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIG 178 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEE
Confidence 45667777777531111 11233445556666654 467899999997643 344444322211 2333 566
Q ss_pred EeCChhhhHhhC-----CCCcceEEcCCCChhHHHHHHHHhhhcC---CC-CchHHHHHHHHHHHhcCCCchHHHHHHHH
Q 048831 165 TTRDKQLLVAHE-----VDEEHILNLDVLNDDEALQLFSMKAFKS---HQ-PVEEYVELSKRVLNYASGLPLALKVLGSF 235 (1051)
Q Consensus 165 TTR~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~---~~-~~~~~~~~~~~i~~~~~G~PLal~~~g~~ 235 (1051)
++.+..+..... .-....+.+.+++.++..+++..++... .. +.+..+.+++......|..+.|+.++-.+
T Consensus 179 i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 179 ISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred EECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 666654322211 1112368999999999999998876321 11 22233333333333345567777765432
Q ss_pred h-----cCC---CHHHHHHHHHHhhcCCCchHHHHHHHhccCCChhcccceeeee
Q 048831 236 L-----IGR---SVDQWRSALERLKRDPSNKIMSILQISFDGLQDSEKKIFLDVA 282 (1051)
Q Consensus 236 L-----~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a 282 (1051)
. .+. +.+....+++.+. .....-.+..||.++|..+..++
T Consensus 259 ~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~ 306 (394)
T PRK00411 259 GLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIV 306 (394)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 111 4556666665551 22344557899998887766554
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.16 E-value=1.7e-10 Score=122.63 Aligned_cols=199 Identities=22% Similarity=0.223 Sum_probs=101.8
Q ss_pred cccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHH------HH
Q 048831 27 LVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISL------QK 100 (1051)
Q Consensus 27 ~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~ 100 (1051)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.........+++.......... . ... .+
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~-~-~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESS-L-RSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHH-H-HHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhH-H-HHHHHHHHHHH
Confidence 799999999999999753 3478999999999999999999998754433344443222211000 0 111 11
Q ss_pred HHHHHHhcc-CCC--------ccccchhhHHHHHHhhC--CCeEEEEEeCCCCHH-----------HHHHHhcCCCCCCC
Q 048831 101 QLLSNLLKL-GDI--------SIWHVDDGINIIGSRLR--QQKVLLVIDDVADVE-----------QLQSLAGKRDWFGL 158 (1051)
Q Consensus 101 ~ll~~l~~~-~~~--------~~~~~~~~~~~i~~~l~--~k~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~ 158 (1051)
.+...+... ... ...........+.+.++ +++++||+||++... .+..+..... ...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccC
Confidence 111112100 000 01122222333333333 355999999986544 1222222211 123
Q ss_pred CCEEEEEeCChhhhHhh------CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHH
Q 048831 159 GSRILITTRDKQLLVAH------EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKV 231 (1051)
Q Consensus 159 gs~IiiTTR~~~~~~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 231 (1051)
...+|+++....+.... .......+.+++|+.+++++++...+-.. ...+...+..++|+..++|+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 34455665555444330 11222359999999999999998865333 11112346679999999999998864
No 32
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.07 E-value=1e-08 Score=116.59 Aligned_cols=253 Identities=14% Similarity=0.113 Sum_probs=141.5
Q ss_pred CCCCCCCccccchhHHHHHHHHhcC--CCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc-----ceEEEeehhhhhhc
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGT--GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY-----ASSFLADVRERFEK 91 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-----~~~~~~~~~~~~~~ 91 (1051)
.+...++.++||+.++++|...+.. .+.....+.|+|++|+|||++++++++.+..... ....+.++....
T Consensus 9 ~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~-- 86 (365)
T TIGR02928 9 EPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD-- 86 (365)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC--
Confidence 3445667899999999999998864 1233467999999999999999999987654322 222333333221
Q ss_pred CCCHHHHHHHHHHHHhc--cCCC-ccccchhhHHHHHHhhC--CCeEEEEEeCCCCHH-----HHHHHhcCCCC-CC--C
Q 048831 92 EGSVISLQKQLLSNLLK--LGDI-SIWHVDDGINIIGSRLR--QQKVLLVIDDVADVE-----QLQSLAGKRDW-FG--L 158 (1051)
Q Consensus 92 ~~~~~~l~~~ll~~l~~--~~~~-~~~~~~~~~~~i~~~l~--~k~~LlVlDdv~~~~-----~~~~l~~~~~~-~~--~ 158 (1051)
. ...+..+++.++.. .... ...+..+....+.+.+. +++++||||+++... .+..+...... .. .
T Consensus 87 -~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~ 164 (365)
T TIGR02928 87 -T-LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNA 164 (365)
T ss_pred -C-HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCC
Confidence 1 14566677776642 1111 11122333444555553 568999999997761 13333322111 11 2
Q ss_pred CCEEEEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhhh---cCCCCchHHHHHHHHHHHhcCCCch-HH
Q 048831 159 GSRILITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKAF---KSHQPVEEYVELSKRVLNYASGLPL-AL 229 (1051)
Q Consensus 159 gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~G~PL-al 229 (1051)
...+|.+|++....... ..-....+.+.+.+.+|..+++..++- ....-.++..+...+++....|.|- |+
T Consensus 165 ~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al 244 (365)
T TIGR02928 165 KVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAI 244 (365)
T ss_pred eEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHH
Confidence 23455555544321111 011123689999999999999998863 1222233334456667777788884 33
Q ss_pred HHHHHHh----c-C---CCHHHHHHHHHHhhcCCCchHHHHHHHhccCCChhcccceeeee
Q 048831 230 KVLGSFL----I-G---RSVDQWRSALERLKRDPSNKIMSILQISFDGLQDSEKKIFLDVA 282 (1051)
Q Consensus 230 ~~~g~~L----~-~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a 282 (1051)
.++-.+. . + -+.+..+.+.+.+. .....-...+||.+++.++..++
T Consensus 245 ~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~ 298 (365)
T TIGR02928 245 DLLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIA 298 (365)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHH
Confidence 3322211 1 1 14455555544442 12334456688887776555433
No 33
>PF05729 NACHT: NACHT domain
Probab=99.01 E-value=2.7e-09 Score=106.48 Aligned_cols=145 Identities=22% Similarity=0.343 Sum_probs=86.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcccc-----ceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFY-----ASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINI 123 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 123 (1051)
|++.|.|.+|+||||+++.++.++..... ...++...+........ ..+...+..... ... ..... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~-~~~---~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-RSLADLLFDQLP-ESI---APIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-chHHHHHHHhhc-cch---hhhHH---H
Confidence 58999999999999999999987766542 23344444443332221 234444433332 111 11111 1
Q ss_pred HHHh-hCCCeEEEEEeCCCCHHH---------HHHHhcC-CC-CCCCCCEEEEEeCChhhhHhhC-CCCcceEEcCCCCh
Q 048831 124 IGSR-LRQQKVLLVIDDVADVEQ---------LQSLAGK-RD-WFGLGSRILITTRDKQLLVAHE-VDEEHILNLDVLND 190 (1051)
Q Consensus 124 i~~~-l~~k~~LlVlDdv~~~~~---------~~~l~~~-~~-~~~~gs~IiiTTR~~~~~~~~~-~~~~~~~~l~~L~~ 190 (1051)
+... .+.++++||+|++|+... +..+... .. ...++.+++||+|......... ......+++.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 2222 256899999999965432 1222211 11 1256899999999987622211 22224799999999
Q ss_pred hHHHHHHHHhh
Q 048831 191 DEALQLFSMKA 201 (1051)
Q Consensus 191 ~ea~~Lf~~~a 201 (1051)
++..+++.++.
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999997653
No 34
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.01 E-value=1.7e-08 Score=109.53 Aligned_cols=180 Identities=15% Similarity=0.137 Sum_probs=104.3
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHH--
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIG-- 125 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~-- 125 (1051)
..+++|+|++|+||||+++.+++.....-...+++.+. ... ..++...+...++.... ..+.......+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~-----~~~-~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT-----RVD-AEDLLRMVAADFGLETE--GRDKAALLRELEDF 114 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC-----CCC-HHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHH
Confidence 35899999999999999999998765321111222211 111 24556666665542111 111112222222
Q ss_pred --Hh-hCCCeEEEEEeCCCCHH--HHHHHhcCCC---CCCCCCEEEEEeCChhhhHhhC--------CCCcceEEcCCCC
Q 048831 126 --SR-LRQQKVLLVIDDVADVE--QLQSLAGKRD---WFGLGSRILITTRDKQLLVAHE--------VDEEHILNLDVLN 189 (1051)
Q Consensus 126 --~~-l~~k~~LlVlDdv~~~~--~~~~l~~~~~---~~~~gs~IiiTTR~~~~~~~~~--------~~~~~~~~l~~L~ 189 (1051)
.. ..+++.++|+||++... .++.+..... .......|++|.... ...... ......+++++|+
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 22 25788999999997643 3444432111 112223455665443 211111 0112368899999
Q ss_pred hhHHHHHHHHhhhcCC--CCchHHHHHHHHHHHhcCCCchHHHHHHHHh
Q 048831 190 DDEALQLFSMKAFKSH--QPVEEYVELSKRVLNYASGLPLALKVLGSFL 236 (1051)
Q Consensus 190 ~~ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~G~PLal~~~g~~L 236 (1051)
.+|..+++...+.... ....-..+..+.|++.++|.|..+..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999987754222 1122334788999999999999999988875
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=2e-11 Score=133.32 Aligned_cols=211 Identities=25% Similarity=0.375 Sum_probs=142.5
Q ss_pred EEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCC
Q 048831 548 TLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCK 627 (1051)
Q Consensus 548 ~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~ 627 (1051)
..+|+.| ....+|..+..+..|+.+.|..|.+..+|..+.++..|.+|+|+.|. +..+|..++.|+ |+.|-+++| +
T Consensus 79 ~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN-k 154 (722)
T KOG0532|consen 79 FADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN-K 154 (722)
T ss_pred hhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC-c
Confidence 3444442 34555666666666666666667777777777777777777777654 455666666665 677766654 5
Q ss_pred CCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCC
Q 048831 628 LENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGL 707 (1051)
Q Consensus 628 l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l 707 (1051)
++.+|+.++.+.+|..|+.+.|.+..+|+.++.+.+|+.|.+..|..... |+.+..|
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l-----------------------p~El~~L 211 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL-----------------------PEELCSL 211 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC-----------------------CHHHhCC
Confidence 67778788877888888888888888888888888888777776654322 4444433
Q ss_pred CCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccc---cCCCCCCEEeccCCccccccCCCCCCCceEee
Q 048831 708 CSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASI---SGLFNLKYLELEDCKRLQSLPQLPPNVIKVSV 784 (1051)
Q Consensus 708 ~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~---~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~i 784 (1051)
.|..||++.|++.. +|..+.+++.|++|.|.+|.+++-|+.| +...-.++|++.-|+ -+.-+.++..++-...
T Consensus 212 -pLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q-~~~a~~~~t~~RP~~~ 287 (722)
T KOG0532|consen 212 -PLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ-SGGALDLYTTLRPRHF 287 (722)
T ss_pred -ceeeeecccCceee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc-ccCCcccccccCCccc
Confidence 47888888888864 8888888888888888888888888765 445557788888885 2333344444444444
Q ss_pred cCCcc
Q 048831 785 NGCAS 789 (1051)
Q Consensus 785 ~~C~~ 789 (1051)
..|.-
T Consensus 288 ~~c~~ 292 (722)
T KOG0532|consen 288 SSCHV 292 (722)
T ss_pred CCcch
Confidence 44544
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=2.9e-11 Score=132.09 Aligned_cols=203 Identities=28% Similarity=0.350 Sum_probs=167.1
Q ss_pred CCCCcCchhh--CCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCC
Q 048831 555 SKLKKFPAIV--ASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVP 632 (1051)
Q Consensus 555 ~~~~~~p~~~--~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp 632 (1051)
..++.||-.- -.+..-...+++.|.+.++|..+..+..|+.|.|+.|. ...+|..++++..|..|+|+.|. +..+|
T Consensus 60 rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp 137 (722)
T KOG0532|consen 60 RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLP 137 (722)
T ss_pred chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCC
Confidence 3445555322 23344557789999999999999999999999998754 57789999999999999999864 56778
Q ss_pred cccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCE
Q 048831 633 DTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSK 712 (1051)
Q Consensus 633 ~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~ 712 (1051)
..+..++ |+.|-+++|.+..+|..++.+.+|..|+.+.|..... |+.++++.+|+.
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~sl-----------------------psql~~l~slr~ 193 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSL-----------------------PSQLGYLTSLRD 193 (722)
T ss_pred hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhc-----------------------hHHhhhHHHHHH
Confidence 8777765 8999999999999999999999999999998875443 677899999999
Q ss_pred EeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCccccccCC------CCCCCceEeecC
Q 048831 713 LDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQSLPQ------LPPNVIKVSVNG 786 (1051)
Q Consensus 713 L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~~lp~------lp~~L~~L~i~~ 786 (1051)
|.++.|++.. +|..+..| .|..||+++|++..||..+..+..|++|.|.+|| |++=|. ...-.++|++.-
T Consensus 194 l~vrRn~l~~--lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 194 LNVRRNHLED--LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred HHHhhhhhhh--CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchh
Confidence 9999999864 88888855 6999999999999999999999999999999998 776552 223457788877
Q ss_pred C
Q 048831 787 C 787 (1051)
Q Consensus 787 C 787 (1051)
|
T Consensus 270 ~ 270 (722)
T KOG0532|consen 270 C 270 (722)
T ss_pred c
Confidence 7
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.3e-10 Score=121.66 Aligned_cols=183 Identities=23% Similarity=0.172 Sum_probs=92.7
Q ss_pred hCCCCCCCEEEecCccCccc---CccccCCCCCCEEecCCCCCCCccccc-ccCCCCCCEEeccCCCCCC-cCCcccCCC
Q 048831 564 VASMEDLSELYLDGTYITEV---PSSIELLTGLELLNLNDCKNLVRLPNS-INGLKSLKTLNLSGCCKLE-NVPDTLGQV 638 (1051)
Q Consensus 564 ~~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~c~~l~-~lp~~l~~l 638 (1051)
...+++++.|+|++|-+... -..+..|++|+.|+|+.|.......+. -..+++|+.|.|++|.... .+...+..+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 34455555555555544422 222345555666666555432222111 1135566666666665432 222233445
Q ss_pred CCccEEEccCCC-CcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccC
Q 048831 639 ESLEELDISGTA-TRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSD 717 (1051)
Q Consensus 639 ~~L~~L~l~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~ 717 (1051)
|+|+.|++..|. +...-.+...++.|+.|+|++|+...... ..-.+.|+.|..|+++.
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~---------------------~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ---------------------GYKVGTLPGLNQLNLSS 280 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc---------------------ccccccccchhhhhccc
Confidence 666666666663 22222223335566666666665433210 12345566666677777
Q ss_pred CCCCCcccccc-----ccCCCcCcEEeccCCCceeccc--cccCCCCCCEEeccCCc
Q 048831 718 CGLREGAILSD-----ICNLHSLKELYLSGNNFVTLPA--SISGLFNLKYLELEDCK 767 (1051)
Q Consensus 718 ~~l~~~~~~~~-----l~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~l~~c~ 767 (1051)
|.+.+-..|+. ...+++|++|++..|++..+++ .+..+++|+.|.+..++
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 66655444443 3456777777777777765553 33445555555554443
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.89 E-value=9.1e-09 Score=109.33 Aligned_cols=177 Identities=23% Similarity=0.354 Sum_probs=113.0
Q ss_pred CCCCCCCccccchhHHH---HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCH
Q 048831 19 TEPKTVKELVGIESRLE---KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSV 95 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 95 (1051)
..|....++||.+.-+. -|.+++.. +.+....+||++|+||||||+.++......|....-+. .+.
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--------~gv- 86 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--------SGV- 86 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--------ccH-
Confidence 45777888999887663 45666644 45677889999999999999999998777654321111 011
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCC--CCHHHHHHHhcCCCCCCCCCEEEE--EeCChhh
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDV--ADVEQLQSLAGKRDWFGLGSRILI--TTRDKQL 171 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv--~~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~~ 171 (1051)
.++ +++++.. -+.+..+++.+|++|.| -+..|-+.+++.. ..|.-|+| ||-++..
T Consensus 87 kdl-r~i~e~a-----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF 145 (436)
T COG2256 87 KDL-REIIEEA-----------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSF 145 (436)
T ss_pred HHH-HHHHHHH-----------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCe
Confidence 222 2222211 12234589999999999 4556777787764 46777766 6766643
Q ss_pred hHhhC-CCCcceEEcCCCChhHHHHHHHHhhhcCCCC-----chHHHHHHHHHHHhcCCCch
Q 048831 172 LVAHE-VDEEHILNLDVLNDDEALQLFSMKAFKSHQP-----VEEYVELSKRVLNYASGLPL 227 (1051)
Q Consensus 172 ~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-----~~~~~~~~~~i~~~~~G~PL 227 (1051)
..... .....++++++|+.+|..+++.+.+-..... ....++..+.+++.++|---
T Consensus 146 ~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 146 ELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred eecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 22211 1223489999999999999998844222111 11234567788888888653
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=3.3e-10 Score=114.07 Aligned_cols=134 Identities=24% Similarity=0.255 Sum_probs=84.2
Q ss_pred ccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCcccccc
Q 048831 611 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLM 690 (1051)
Q Consensus 611 i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 690 (1051)
+...+.|++|+|++|. ++.+.+++.-+|.++.|+++.|.+..+-. +..+++|+.|++++|.....
T Consensus 280 ~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~------------- 344 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC------------- 344 (490)
T ss_pred cchHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhh-------------
Confidence 3345566677777653 34455556666677777777777666544 66677777777776653321
Q ss_pred ccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceecc--ccccCCCCCCEEeccCCcc
Q 048831 691 RKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLP--ASISGLFNLKYLELEDCKR 768 (1051)
Q Consensus 691 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~l~~c~~ 768 (1051)
.-+-..+-+++.|.|+.|.+. ..+.++.+-+|..|++++|++..+. ..|+++|.|+.|.+.+||
T Consensus 345 ----------~Gwh~KLGNIKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP- 410 (490)
T KOG1259|consen 345 ----------VGWHLKLGNIKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP- 410 (490)
T ss_pred ----------hhhHhhhcCEeeeehhhhhHh---hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-
Confidence 111233456677777777653 2455666777778888888777553 367788888888888877
Q ss_pred ccccC
Q 048831 769 LQSLP 773 (1051)
Q Consensus 769 L~~lp 773 (1051)
+..+|
T Consensus 411 l~~~v 415 (490)
T KOG1259|consen 411 LAGSV 415 (490)
T ss_pred ccccc
Confidence 33333
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.85 E-value=4.1e-08 Score=102.72 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=103.6
Q ss_pred CCCCCCCccccchhHHHHHHHHhcC-CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGT-GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~-~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
..+...++|+|-+... .+..+... .....+.+.|||++|+|||+||+++++.+..+...+.|+.. ... ..
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~-~~~-------~~ 80 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL-SKS-------QY 80 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH-HHh-------hh
Confidence 3455567788654332 22222211 11223578999999999999999999987665555566541 110 00
Q ss_pred HHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---HHHHH-HhcCCCC-CCCCCEEEEEeCCh---
Q 048831 98 LQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV---EQLQS-LAGKRDW-FGLGSRILITTRDK--- 169 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~IiiTTR~~--- 169 (1051)
...+ +.+.++ +.-+|||||++.. .+|+. +...+.. ...|.++||+|.+.
T Consensus 81 ~~~~----------------------~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 81 FSPA----------------------VLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred hhHH----------------------HHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 0001 111122 2248999999763 33442 2221211 12456665555443
Q ss_pred -------hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHH
Q 048831 170 -------QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGS 234 (1051)
Q Consensus 170 -------~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~ 234 (1051)
.+...+.... ++++++++.++.++++.+.++...... .+++.+-|++++.|..-++..+-.
T Consensus 138 ~l~~~~~~L~sRl~~g~--~~~l~~pd~e~~~~iL~~~a~~~~l~l--~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 138 ALSIKLPDLASRLTWGE--IYQLNDLTDEQKIIVLQRNAYQRGIEL--SDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HccccchhHHHHHhcCC--eeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHHH
Confidence 3333333333 899999999999999999887544322 236777888888877766554433
No 41
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.84 E-value=1e-07 Score=110.50 Aligned_cols=299 Identities=19% Similarity=0.217 Sum_probs=177.6
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISL 98 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 98 (1051)
.+|..+...|-|..-++.+... .+.|.+.|..++|.|||||+.+...+. ..-..+.|+. +.+... + ....
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~~-~~~~~v~Wls-lde~dn--d-p~rF 82 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRELA-ADGAAVAWLS-LDESDN--D-PARF 82 (894)
T ss_pred CCCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHhc-CcccceeEee-cCCccC--C-HHHH
Confidence 4666678888898655554432 467999999999999999999998733 3344566765 322211 1 1444
Q ss_pred HHHHHHHHhccCCCc------------cccchhhHHHHHHhhC--CCeEEEEEeCCCCH------HHHHHHhcCCCCCCC
Q 048831 99 QKQLLSNLLKLGDIS------------IWHVDDGINIIGSRLR--QQKVLLVIDDVADV------EQLQSLAGKRDWFGL 158 (1051)
Q Consensus 99 ~~~ll~~l~~~~~~~------------~~~~~~~~~~i~~~l~--~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~ 158 (1051)
...++..+....... ..+.......+..-+. .++..+||||..-. ..++.+... ..+
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~ 159 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APE 159 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCC
Confidence 555555554221111 1112222333333333 37899999997322 224444443 346
Q ss_pred CCEEEEEeCChhhhHhhCCC-CcceEEc----CCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHH
Q 048831 159 GSRILITTRDKQLLVAHEVD-EEHILNL----DVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLG 233 (1051)
Q Consensus 159 gs~IiiTTR~~~~~~~~~~~-~~~~~~l----~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g 233 (1051)
+-..|+|||...-....... ....+++ -.|+.+|+.++|.... .. +-.+..++.+.++..|-+-|+..++
T Consensus 160 ~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~---~l--~Ld~~~~~~L~~~teGW~~al~L~a 234 (894)
T COG2909 160 NLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG---SL--PLDAADLKALYDRTEGWAAALQLIA 234 (894)
T ss_pred CeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC---CC--CCChHHHHHHHhhcccHHHHHHHHH
Confidence 78999999987432211100 0112222 3578999999997654 11 2223557899999999999999999
Q ss_pred HHhcCC-CHHHHHHHHHHhhcCCCchHHH-HHHHhccCCChhcccceeeeecccCCCCHHHHHHHHhhcCCCcchhhhHh
Q 048831 234 SFLIGR-SVDQWRSALERLKRDPSNKIMS-ILQISFDGLQDSEKKIFLDVACFFKQKNRDYVTKILEGCGFFPVIGIEVL 311 (1051)
Q Consensus 234 ~~L~~~-~~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L 311 (1051)
-.++.. +.+.- +..+... ...+.+ ...--+|.||++.|..++-+|++.. +.-+-..++.... ....-++.|
T Consensus 235 La~~~~~~~~q~---~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~--ng~amLe~L 307 (894)
T COG2909 235 LALRNNTSAEQS---LRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEE--NGQAMLEEL 307 (894)
T ss_pred HHccCCCcHHHH---hhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCC--cHHHHHHHH
Confidence 888733 33222 2212111 112221 2233468999999999888887732 2222222222111 122337889
Q ss_pred hccCceeE--e-CCCceehhHHHHHHHHHHHhhc
Q 048831 312 IERSLLTV--D-DYNTLGMHDLLQELGQLIVTRQ 342 (1051)
Q Consensus 312 ~~~sLi~~--~-~~~~~~mHdll~~~~~~i~~~e 342 (1051)
.+++|+-. + +.+.|..|.++.+|.+.-...+
T Consensus 308 ~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 308 ERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 99998753 2 2568999999999999877664
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.82 E-value=6.3e-09 Score=119.79 Aligned_cols=197 Identities=33% Similarity=0.456 Sum_probs=144.0
Q ss_pred EEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCC-CCCEEecCCCCCCCcccccccCCCCCCEEeccCCC
Q 048831 548 TLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLT-GLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCC 626 (1051)
Q Consensus 548 ~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~ 626 (1051)
.|.++.+..... ...+..+..++.|++.++.+.++|.....++ +|+.|+++++. +..+|..+..+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 455555433222 2233444678888888888888888777774 88888888755 45565667788888888888864
Q ss_pred CCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCC
Q 048831 627 KLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSG 706 (1051)
Q Consensus 627 ~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 706 (1051)
+..+|...+.+++|+.|++++|.+..+|..+..+..|++|.+++|..... +..+.+
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-----------------------~~~~~~ 230 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL-----------------------LSSLSN 230 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceec-----------------------chhhhh
Confidence 45566666678888888888888888888877777788888888752222 445677
Q ss_pred CCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCccccccC
Q 048831 707 LCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQSLP 773 (1051)
Q Consensus 707 l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~~lp 773 (1051)
+..+..|.+.+|.+.. ++..++.+++|+.|++++|.++.++. +..+.+|+.|+++++.....+|
T Consensus 231 ~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 231 LKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccccCCceeee--ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 7778888888887643 46777888889999999999988887 8888899999998877554444
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.5e-09 Score=115.54 Aligned_cols=190 Identities=22% Similarity=0.194 Sum_probs=134.2
Q ss_pred ccCceecEEeeeCCCCCC--cCchhhCCCCCCCEEEecCccCcccCcc--ccCCCCCCEEecCCCCCCC-cccccccCCC
Q 048831 541 SSLKCLRTLKLSGCSKLK--KFPAIVASMEDLSELYLDGTYITEVPSS--IELLTGLELLNLNDCKNLV-RLPNSINGLK 615 (1051)
Q Consensus 541 ~~l~~L~~L~Ls~c~~~~--~~p~~~~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~~~~l~-~lp~~i~~L~ 615 (1051)
..|++++.|||++|-... .+-.+...+++|+.|+|+.|.+...-.+ -..++.|+.|.|+.|.... .+-.....+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 347888888888864332 2335567788888899988887644332 2467888999999987542 2333345688
Q ss_pred CCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCC--cccccccCCcEEEccCCCCCCCCCcccCCccccccccC
Q 048831 616 SLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPP--SSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKS 693 (1051)
Q Consensus 616 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 693 (1051)
+|+.|++.+|...........-+..|++|+|++|.+...+ ..++.++.|..|+++.|.........
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d------------ 290 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPD------------ 290 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCC------------
Confidence 9999999988644333334455678999999999988776 56788999999999887654321100
Q ss_pred CCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCce
Q 048831 694 SCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFV 746 (1051)
Q Consensus 694 ~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 746 (1051)
.....-...+++|++|+++.|++.+......+..+++|+.|.+..|.+.
T Consensus 291 ----~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 291 ----VESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ----ccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 0001124568999999999999987666667778889999998888765
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=1.9e-08 Score=115.81 Aligned_cols=194 Identities=25% Similarity=0.335 Sum_probs=128.6
Q ss_pred EEEecCcccCCcccccC--cCceEEEEcCCCCCCCCCCCCCC--CeeEEEcCccCcccccccccCCCCCCEEecCCCCCC
Q 048831 402 FLNIGNVQLPEGLEYLS--NKLRLLNWHRYPLKSLPSNLQLD--KIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENL 477 (1051)
Q Consensus 402 ~L~l~~~~l~~~~~~l~--~~Lr~L~l~~~~l~~lp~~~~~~--~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l 477 (1051)
.+.+..+.+...+.... ..+..|++.++.+..+|...... +|.+|++++|.+.+++..+..+++|+.|++++|+..
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 45555555533333322 35888888888888888887554 888888888888888877888888888888888655
Q ss_pred CCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCC
Q 048831 478 IKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKL 557 (1051)
Q Consensus 478 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~ 557 (1051)
...+..+..++|+.|++++ ..+..+|..+.....|+.|.+++.. +..++..+.++..+..|.+.++ .+
T Consensus 177 ~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~----------~~~~~~~~~~~~~l~~l~l~~n-~~ 244 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNS----------IIELLSSLSNLKNLSGLELSNN-KL 244 (394)
T ss_pred hhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCc----------ceecchhhhhcccccccccCCc-ee
Confidence 4444444788888888887 4566777666666667777766532 2233444555666666664443 34
Q ss_pred CcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCccc
Q 048831 558 KKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLP 608 (1051)
Q Consensus 558 ~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp 608 (1051)
..++..++.+.+|+.|++++|.+..++. ++.+.+|+.|+++++.....+|
T Consensus 245 ~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 245 EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred eeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 4445666666667777777777776665 6666777777776665544444
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.69 E-value=4.8e-07 Score=90.31 Aligned_cols=183 Identities=23% Similarity=0.265 Sum_probs=100.2
Q ss_pred CCCCCCCccccchhHHHHHHHHhcC---CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGT---GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSV 95 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 95 (1051)
..|...++|||.+.-++.+.-++.. ..+....+.+||++|+||||||..+++.....|.. ... ...++.
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~sg--~~i~k~--- 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TSG--PAIEKA--- 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EEC--CC--SC---
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---ccc--hhhhhH---
Confidence 5677889999999888887655542 23446789999999999999999999988776531 110 000110
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCCC--------CCCC-----
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDWF--------GLGS----- 160 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~--------~~gs----- 160 (1051)
.+ + ...+. .++ ++-+|.+|++... .+-+.|.+....+ ++++
T Consensus 90 ~d----l------------------~~il~-~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~ 145 (233)
T PF05496_consen 90 GD----L------------------AAILT-NLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRI 145 (233)
T ss_dssp HH----H------------------HHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEE
T ss_pred HH----H------------------HHHHH-hcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeec
Confidence 11 1 11111 122 3346667998543 3333343332211 2222
Q ss_pred ------EEEEEeCChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHH
Q 048831 161 ------RILITTRDKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGS 234 (1051)
Q Consensus 161 ------~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~ 234 (1051)
-|=.|||...+.....-.-..+..++..+.+|-.++..+.+..-+. +-.++.+.+|++++.|-|--..-+-.
T Consensus 146 ~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 146 NLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp E----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred cCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 2345888765544333222225689999999999999988754433 33457899999999999965544443
Q ss_pred H
Q 048831 235 F 235 (1051)
Q Consensus 235 ~ 235 (1051)
.
T Consensus 224 r 224 (233)
T PF05496_consen 224 R 224 (233)
T ss_dssp H
T ss_pred H
Confidence 3
No 46
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.68 E-value=1.8e-08 Score=108.01 Aligned_cols=282 Identities=20% Similarity=0.244 Sum_probs=183.3
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIG 125 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 125 (1051)
...|.|.++|.|||||||++-.+.. ++..|...+++++.....++..+ .-.+...+. .....-+.....+.
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v----~~~~ag~~g----l~~~~g~~~~~~~~ 82 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALV----FPTLAGALG----LHVQPGDSAVDTLV 82 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHh----HHHHHhhcc----cccccchHHHHHHH
Confidence 3458999999999999999999999 88999999988877665443222 112222122 12222233444666
Q ss_pred HhhCCCeEEEEEeCCCCHHH-HHHHhcCCCCCCCCCEEEEEeCChhhhHhhCCCCcceEEcCCCChh-HHHHHHHHhhhc
Q 048831 126 SRLRQQKVLLVIDDVADVEQ-LQSLAGKRDWFGLGSRILITTRDKQLLVAHEVDEEHILNLDVLNDD-EALQLFSMKAFK 203 (1051)
Q Consensus 126 ~~l~~k~~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~ 203 (1051)
.+..++|.++|+||...... ...+...+....+.-+|+.|+|... .+.....+.+..|+.. ++.++|...+..
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~-----l~~ge~~~~~~~L~~~d~a~~lf~~ra~~ 157 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI-----LVAGEVHRRVPSLSLFDEAIELFVCRAVL 157 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh-----cccccccccCCccccCCchhHHHHHHHHH
Confidence 77788999999999865532 3333333333456678899999754 2334447888888876 688998877632
Q ss_pred CCC---CchHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCHHHHHHHHHH----hhcC------CCchHHHHHHHhccCC
Q 048831 204 SHQ---PVEEYVELSKRVLNYASGLPLALKVLGSFLIGRSVDQWRSALER----LKRD------PSNKIMSILQISFDGL 270 (1051)
Q Consensus 204 ~~~---~~~~~~~~~~~i~~~~~G~PLal~~~g~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~sy~~L 270 (1051)
-.. -.......+.+|.+..+|.|++|..+++..+.-..++.-+.+.. ++.. ........+..||.-|
T Consensus 158 ~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lL 237 (414)
T COG3903 158 VALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALL 237 (414)
T ss_pred hccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhh
Confidence 221 12233466789999999999999999999887665554444332 2222 2345667899999999
Q ss_pred ChhcccceeeeecccCCCCHHHHHHHHhhcCC-Cc----chhhhHhhccCceeEeC---CCceehhHHHHHHHHHHHhh
Q 048831 271 QDSEKKIFLDVACFFKQKNRDYVTKILEGCGF-FP----VIGIEVLIERSLLTVDD---YNTLGMHDLLQELGQLIVTR 341 (1051)
Q Consensus 271 ~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~-~~----~~~l~~L~~~sLi~~~~---~~~~~mHdll~~~~~~i~~~ 341 (1051)
...++-.|--++.|...|+.+.....-....+ .+ -..+..+++++++...+ ...++.-+-.+.|+.+...+
T Consensus 238 tgwe~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 238 TGWERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred hhHHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888877632222211111 12 22356678888886654 22455555566666555443
No 47
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.66 E-value=5.1e-07 Score=101.61 Aligned_cols=205 Identities=16% Similarity=0.146 Sum_probs=111.1
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc-cceEEEeehhhhhhcCCCHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF-YASSFLADVRERFEKEGSVISL 98 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l 98 (1051)
.|....+++|++..++.+.+++..+ ..+.+.++|+.|+||||+|+++++.+..+. .......++........ ..+
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~--~~~ 85 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK--KYL 85 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch--hhh
Confidence 4555678999999999999988653 334688999999999999999998765432 22222223322111100 000
Q ss_pred HH--HHHHHHhccCCCccccchhhHHHHHHh---h--CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh
Q 048831 99 QK--QLLSNLLKLGDISIWHVDDGINIIGSR---L--RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDK 169 (1051)
Q Consensus 99 ~~--~ll~~l~~~~~~~~~~~~~~~~~i~~~---l--~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~ 169 (1051)
.. .....+...........+.....+... . ...+-+||+||++.. .....+...+....+..++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00 000000000000000011111111111 1 133448999999654 22333443333334567888887543
Q ss_pred h-hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHH
Q 048831 170 Q-LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKV 231 (1051)
Q Consensus 170 ~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 231 (1051)
. +..... .....+++.+++.++..+++.+.+...... -..+..+.++++++|.+-.+..
T Consensus 166 ~~~~~~L~-sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIR-SRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhc-CCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 2 222111 112378999999999999998876433322 2236778888999887755443
No 48
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.65 E-value=4.7e-07 Score=103.80 Aligned_cols=182 Identities=26% Similarity=0.343 Sum_probs=109.5
Q ss_pred CCCCCCccccchhHHHH---HHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHH
Q 048831 20 EPKTVKELVGIESRLEK---LRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVI 96 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 96 (1051)
.|...+++||++..++. +.+++... ....+.|+|++|+||||+|+.+++.....|.. +.... .+ .
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~~-----~~--~ 74 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAVT-----SG--V 74 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eeccc-----cc--H
Confidence 45667889999988766 77777543 45678899999999999999999876554321 11110 01 1
Q ss_pred HHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEE--EeCChhhh
Q 048831 97 SLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILI--TTRDKQLL 172 (1051)
Q Consensus 97 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii--TTR~~~~~ 172 (1051)
.-.+++..... .....+++.+|++|+++.. .+.+.+...+. .|..++| ||.+....
T Consensus 75 ~~ir~ii~~~~-----------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~ 134 (413)
T PRK13342 75 KDLREVIEEAR-----------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFE 134 (413)
T ss_pred HHHHHHHHHHH-----------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhh
Confidence 11112222111 0011457789999999754 45556655443 3555555 33433211
Q ss_pred --HhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCc-hHHHHHHHHHHHhcCCCchHHHHHHH
Q 048831 173 --VAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPV-EEYVELSKRVLNYASGLPLALKVLGS 234 (1051)
Q Consensus 173 --~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~~g~ 234 (1051)
.... ....++.+.+++.++..+++.+.+....... ....+..+.|+++++|.+..+..+..
T Consensus 135 l~~aL~-SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 135 VNPALL-SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred ccHHHh-ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1111 1123799999999999999988653211111 22246678899999999976654443
No 49
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.6e-06 Score=97.59 Aligned_cols=195 Identities=15% Similarity=0.158 Sum_probs=111.6
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccc---eEEEe-ehhhhhhcCCCH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYA---SSFLA-DVRERFEKEGSV 95 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~-~~~~~~~~~~~~ 95 (1051)
.|....+++|.+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+...... .+-.+ .+++..
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~------ 83 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE------ 83 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh------
Confidence 4556788999999999998888754 234678999999999999999999876421110 00000 000000
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCC
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL-----RQQKVLLVIDDVADVE--QLQSLAGKRDWFGLGSRILITTRD 168 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~ 168 (1051)
....-.+...........++ ...+.+.+ .+++-++|+|+++... .++.++..+....+..++|++|.+
T Consensus 84 ----~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 84 ----KGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred ----cCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 00000000000000000111 11111111 2345689999997664 366666666555566777777765
Q ss_pred hh-hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 169 KQ-LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 169 ~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.. +..... .....+++.+++.++..+.+...+...+... ..+.++.|++.++|.|-.+
T Consensus 159 ~~~l~~tI~-SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 159 VEKIPKTIL-SRCLQFKLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHhhhHHHH-hhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 43 222111 1123899999999999998887664433222 2356778999999988543
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.62 E-value=8.9e-09 Score=103.93 Aligned_cols=214 Identities=24% Similarity=0.249 Sum_probs=122.4
Q ss_pred ccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCcc-
Q 048831 508 LRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSS- 586 (1051)
Q Consensus 508 ~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~- 586 (1051)
-....|++|.+++-..--.- +...-..+|..+.-+++|+.+.++.|+ .+.+......-+.|+++.+..+.+...|.-
T Consensus 179 df~~~l~~l~vs~~~~p~~~-sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~ 256 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDR-SNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTIQDVPSLL 256 (490)
T ss_pred HhhhheeEEEecCCCCCCcc-ccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccccccccccc
Confidence 34567888877663211000 011113456677778999999999885 233333333445677787777665532211
Q ss_pred -----------------------ccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccE
Q 048831 587 -----------------------IELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEE 643 (1051)
Q Consensus 587 -----------------------i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~ 643 (1051)
+..++.|+.|+|++|. +..+.+++.-+|.++.|+++.|..... ..+..+++|+.
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~ 333 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQL 333 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeee--hhhhhcccceE
Confidence 1123446666666643 344455555566666666666654432 22556666666
Q ss_pred EEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCc
Q 048831 644 LDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREG 723 (1051)
Q Consensus 644 L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~ 723 (1051)
|++++|.+..+-.+-..+.+.++|.+.+|..-. .+.++.+.+|..||+++|++.+.
T Consensus 334 LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~------------------------LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 334 LDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET------------------------LSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred eecccchhHhhhhhHhhhcCEeeeehhhhhHhh------------------------hhhhHhhhhheeccccccchhhH
Confidence 666666666665555566666666666654221 23345556666666666666543
Q ss_pred cccccccCCCcCcEEeccCCCceeccc
Q 048831 724 AILSDICNLHSLKELYLSGNNFVTLPA 750 (1051)
Q Consensus 724 ~~~~~l~~l~~L~~L~L~~n~l~~lp~ 750 (1051)
.-...++++|.|+.|.|.+|.+..+|.
T Consensus 390 deV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 390 DEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred HHhcccccccHHHHHhhcCCCccccch
Confidence 344456666666666666666665553
No 51
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.61 E-value=1.1e-06 Score=92.45 Aligned_cols=177 Identities=21% Similarity=0.234 Sum_probs=103.7
Q ss_pred CCCCcccc--chhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHH
Q 048831 22 KTVKELVG--IESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQ 99 (1051)
Q Consensus 22 ~~~~~~vG--r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 99 (1051)
...++|++ .+..++++.+++.. ...+.|.|+|++|+|||++|++++++........+++. +...... .
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~-------~ 81 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA-------D 81 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh-------H
Confidence 34456763 44566777777643 33468999999999999999999987655443344443 3222110 0
Q ss_pred HHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH---H-HHHHhcCCCC-CCCCCEEEEEeCChhh---
Q 048831 100 KQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE---Q-LQSLAGKRDW-FGLGSRILITTRDKQL--- 171 (1051)
Q Consensus 100 ~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~~~--- 171 (1051)
..++ +.+.+. -+||+||++... . .+.+...+.. ...+.++|+||+....
T Consensus 82 ~~~~----------------------~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~ 138 (226)
T TIGR03420 82 PEVL----------------------EGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLP 138 (226)
T ss_pred HHHH----------------------hhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCC
Confidence 0111 112222 389999996543 2 2223322211 1234588898875321
Q ss_pred ------hHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHHH
Q 048831 172 ------LVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGSF 235 (1051)
Q Consensus 172 ------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~~ 235 (1051)
...... ...+++.+++.++...++...+-....+ -..+..+.+.+++.|+|..+..+...
T Consensus 139 ~~~~~L~~r~~~--~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 139 LRLPDLRTRLAW--GLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred cccHHHHHHHhc--CeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 111111 2379999999999999998765322222 22356677888899998877766443
No 52
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.61 E-value=8.8e-07 Score=103.62 Aligned_cols=214 Identities=15% Similarity=0.137 Sum_probs=114.9
Q ss_pred CCCCCCCccccchhHHHHHHHHhcC---CCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc-----cc-ceEEEeehhhhh
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGT---GSTDVRMIGIWGMGGLGKTTLARVVYDLISHE-----FY-ASSFLADVRERF 89 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----f~-~~~~~~~~~~~~ 89 (1051)
.+...++.+.||+.|+++|...|.. +.....++.|+|++|+|||+.++.|.+++... .+ ..+...++....
T Consensus 749 ~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Ls 828 (1164)
T PTZ00112 749 QLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVV 828 (1164)
T ss_pred CcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccC
Confidence 3455668899999999999888764 22333577899999999999999999876432 11 222233332211
Q ss_pred hcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhC---CCeEEEEEeCCCCHH--HHHHHhcCCCCC-CCCCEEE
Q 048831 90 EKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLR---QQKVLLVIDDVADVE--QLQSLAGKRDWF-GLGSRIL 163 (1051)
Q Consensus 90 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~---~k~~LlVlDdv~~~~--~~~~l~~~~~~~-~~gs~Ii 163 (1051)
.. ..+...+..++............+....+.+.+. +...+||||+|+... .-+.|...+.|. ..+++|+
T Consensus 829 tp----~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLi 904 (1164)
T PTZ00112 829 HP----NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLV 904 (1164)
T ss_pred CH----HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEE
Confidence 11 4455556666632222212222233334444332 234689999997542 111122111111 2455654
Q ss_pred E--EeCChhhhH----hhCC-CCcceEEcCCCChhHHHHHHHHhhhcCC--CCchHHHHHHHHHHHhcCCCchHHHHHHH
Q 048831 164 I--TTRDKQLLV----AHEV-DEEHILNLDVLNDDEALQLFSMKAFKSH--QPVEEYVELSKRVLNYASGLPLALKVLGS 234 (1051)
Q Consensus 164 i--TTR~~~~~~----~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~G~PLal~~~g~ 234 (1051)
| +|.+..+.. .... -....+...+.+.+|..+++..++-... ...+..+-+|+.++...|-.-.||.++-.
T Consensus 905 LIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 905 LIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 4 333221111 1110 1111467799999999999998875321 22333444444444444445566666554
Q ss_pred Hh
Q 048831 235 FL 236 (1051)
Q Consensus 235 ~L 236 (1051)
+.
T Consensus 985 Ag 986 (1164)
T PTZ00112 985 AF 986 (1164)
T ss_pred HH
Confidence 44
No 53
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=7.7e-07 Score=103.08 Aligned_cols=196 Identities=16% Similarity=0.125 Sum_probs=113.5
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc--cccceEEEeehhhhhhcCCCHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH--EFYASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
.|....+++|.+.-.+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...++.+........ +....
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~-~~h~d 86 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRR-GAHPD 86 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhc-CCCCc
Confidence 45567889999998888988887642 3466799999999999999999987642 22223333211100000 00000
Q ss_pred HHHHHHHHHhccCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 048831 98 LQKQLLSNLLKLGDISIWHVDDGINIIGSR-----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDK- 169 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~- 169 (1051)
+ ..+...... ..+. +..+.+. ..+++-++|+|+++.. ..+..+...+....+...+|++|...
T Consensus 87 ----v-~el~~~~~~---~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 87 ----V-LEIDAASNN---SVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred ----e-EEecccccC---CHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 0 000000000 0111 1112221 1245568899999754 44666666655444556666666543
Q ss_pred hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 170 QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.+..... .....+++.+++.++..+++.+.+-..+... ..+....|++.++|.+--+
T Consensus 158 kl~~~I~-SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 158 KMPPTIL-SRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hCChHHh-cceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 3222211 1123799999999999999998775443322 2366788999999988544
No 54
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=5.5e-06 Score=92.16 Aligned_cols=204 Identities=13% Similarity=0.104 Sum_probs=112.4
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc--cceEEEeehhhhhhcCCCHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF--YASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
.|....+++|.+...+.+.+.+..+ .-...+.++|+.|+||+|+|.+++..+--+- .....-.. .......+. -.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~-~~~l~~~~~-c~ 90 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP-PTSLAIDPD-HP 90 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc-cccccCCCC-Ch
Confidence 4556688999998888898888764 2346799999999999999999998653211 00000000 000000000 00
Q ss_pred HHHHHHHHH-------hc---cCCC---ccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHHhcCCCCCC
Q 048831 98 LQKQLLSNL-------LK---LGDI---SIWHVDDGINIIGSRL-----RQQKVLLVIDDVADV--EQLQSLAGKRDWFG 157 (1051)
Q Consensus 98 l~~~ll~~l-------~~---~~~~---~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~ 157 (1051)
..+.+.... .. .+.. ..-.+++ ++.+.+.+ .+++-++|+||++.. .....|+..+..-.
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 001110000 00 0000 0001122 22233332 246678999999654 44555555544334
Q ss_pred CCCEEEEEeCChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHH
Q 048831 158 LGSRILITTRDKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLG 233 (1051)
Q Consensus 158 ~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g 233 (1051)
++..+|++|.+.......-......+.+.+++.++..+++..... ...+ +....+++.++|.|.....+.
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---DLPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---cCCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 566777777766432221122234899999999999999987541 1111 222678999999998665543
No 55
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.55 E-value=4.3e-08 Score=96.07 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=5.9
Q ss_pred ccCCCcCcEEeccCCCce
Q 048831 729 ICNLHSLKELYLSGNNFV 746 (1051)
Q Consensus 729 l~~l~~L~~L~L~~n~l~ 746 (1051)
+..+++|+.|+|.+|.++
T Consensus 109 L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp GGG-TT--EEE-TT-GGG
T ss_pred HHcCCCcceeeccCCccc
Confidence 334444444444444444
No 56
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.54 E-value=1.5e-06 Score=96.99 Aligned_cols=185 Identities=14% Similarity=0.214 Sum_probs=108.2
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc-ccceEEEeehhhhhhcCCCHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE-FYASSFLADVRERFEKEGSVISL 98 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l 98 (1051)
.|....+++|++..++.+..++..+ ..+.+.|+|..|+||||+|+.+++.+... +.......+.. +..+ ...
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~---~~~~--~~~ 84 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS---DERG--IDV 84 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc---cccc--hHH
Confidence 4456678999999999999998653 33457999999999999999999876432 22111111111 1111 111
Q ss_pred HHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhHhh
Q 048831 99 QKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQ-LLVAH 175 (1051)
Q Consensus 99 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~ 175 (1051)
..+.+..+..... .....+-++++|+++.. +....+...+....+.+++|+++.... +....
T Consensus 85 ~~~~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l 149 (319)
T PRK00440 85 IRNKIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPI 149 (319)
T ss_pred HHHHHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhH
Confidence 1111111110000 00123558899998654 334445444444455677887775432 11111
Q ss_pred CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 176 EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 176 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
. .....+++.+++.++...++...+...+... ..+....+++.++|.+--+
T Consensus 150 ~-sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i--~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 150 Q-SRCAVFRFSPLKKEAVAERLRYIAENEGIEI--TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred H-HHhheeeeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 1 1112789999999999999988775433222 2356788899999987553
No 57
>PLN03025 replication factor C subunit; Provisional
Probab=98.53 E-value=1.2e-06 Score=97.06 Aligned_cols=186 Identities=15% Similarity=0.207 Sum_probs=109.0
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc-cccceEEEeehhhhhhcCCCHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH-EFYASSFLADVRERFEKEGSVISL 98 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l 98 (1051)
.|....+++|.+..++.|.+++..+ ..+.+.++|++|+||||+|+++++.+.. .|...+.-.+. ++..+ .+.
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~~~--~~~ 80 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDDRG--IDV 80 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---ccccc--HHH
Confidence 4566788999999888888887653 3345789999999999999999987633 33322221111 11111 112
Q ss_pred HHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhHhh
Q 048831 99 QKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQ-LLVAH 175 (1051)
Q Consensus 99 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~ 175 (1051)
.++.......... . .-.++.-++|+|+++.. .....+...+....+.+++|+++.... +....
T Consensus 81 vr~~i~~~~~~~~-~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L 146 (319)
T PLN03025 81 VRNKIKMFAQKKV-T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPI 146 (319)
T ss_pred HHHHHHHHHhccc-c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhH
Confidence 2222222110000 0 00234568999999764 233444443443456678887775432 11111
Q ss_pred CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 176 EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 176 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.. ....+++.+++.++..+.+.+.+-..+...+ .+..+.|++.++|..-.+
T Consensus 147 ~S-Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 147 QS-RCAIVRFSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred HH-hhhcccCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 11 1127999999999999999887744332222 356788899999876433
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=3.5e-06 Score=98.50 Aligned_cols=202 Identities=17% Similarity=0.155 Sum_probs=115.1
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc--ccc-eEEEe-ehhhhhhcCCCH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE--FYA-SSFLA-DVRERFEKEGSV 95 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f~~-~~~~~-~~~~~~~~~~~~ 95 (1051)
.|....++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+.+... ... .|-.+ .++.... ...
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~-G~h- 87 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE-GRF- 87 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc-CCC-
Confidence 45567889999999999999987542 24677899999999999999999865321 000 00000 0000000 000
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCCh
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSR----LRQQKVLLVIDDVADVE--QLQSLAGKRDWFGLGSRILITTRDK 169 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~ 169 (1051)
..+......+....++....+... ..++.-++|||+++... .+..|+..+....+..++|+||++.
T Consensus 88 --------~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 88 --------VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred --------ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 000000000000111111122111 12344578899997653 3666766555445678888888876
Q ss_pred hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCc-hHHHHHHH
Q 048831 170 QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLP-LALKVLGS 234 (1051)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~g~ 234 (1051)
.-....-......+.++.++.++..+.+.+.+...+.. ...+..+.|++.++|.. -|+..+-.
T Consensus 160 ~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 43221111122479999999999999998876433322 22366788999998865 45554333
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=98.52 E-value=2e-06 Score=100.61 Aligned_cols=185 Identities=16% Similarity=0.199 Sum_probs=109.6
Q ss_pred CCCCCCccccchhHHHHHHHHhcCC--CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTG--STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
.|....+++|.+..++++..|+..- +...+.+.|+|++|+||||+|+++++.+. ++. ...+... . .. ..
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~--ielnasd---~-r~-~~ 79 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV--IELNASD---Q-RT-AD 79 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE--EEEcccc---c-cc-HH
Confidence 4556788999999999999998642 22267899999999999999999998763 221 1122211 1 11 12
Q ss_pred HHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH------HHHHHhcCCCCCCCCCEEEEEeCChhh
Q 048831 98 LQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE------QLQSLAGKRDWFGLGSRILITTRDKQL 171 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IiiTTR~~~~ 171 (1051)
...++........ .....++-+||+|+++... .+..+...+. ..+..||+|+.+..-
T Consensus 80 ~i~~~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~ 142 (482)
T PRK04195 80 VIERVAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYD 142 (482)
T ss_pred HHHHHHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccc
Confidence 2222222211000 0011356789999997642 2444433322 234556666654321
Q ss_pred hHh-hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 172 LVA-HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 172 ~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
... .-......+++.+++.++....+...+...+...+ .++...|++.++|..-.+...
T Consensus 143 ~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~--~eaL~~Ia~~s~GDlR~ain~ 202 (482)
T PRK04195 143 PSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD--DEALKEIAERSGGDLRSAIND 202 (482)
T ss_pred cchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 111 00111237999999999999998877654333222 366788999999977554433
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=9.4e-07 Score=99.50 Aligned_cols=195 Identities=12% Similarity=0.079 Sum_probs=111.1
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccc---eEEEeehhhhhhcCCCHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYA---SSFLADVRERFEKEGSVI 96 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~~~~~~~~~~~~~~ 96 (1051)
.|....++||.+.-++.|..++..+. -...+.++|+.|+||||+|+.++..+...... .|..+... .
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC---------~ 82 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC---------L 82 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH---------H
Confidence 46677889999999999998887643 23568999999999999999999865432110 11111000 0
Q ss_pred HHHHHHHHHHhc---cCCCccccchhhHHHHHHh-hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-h
Q 048831 97 SLQKQLLSNLLK---LGDISIWHVDDGINIIGSR-LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRD-K 169 (1051)
Q Consensus 97 ~l~~~ll~~l~~---~~~~~~~~~~~~~~~i~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~ 169 (1051)
.+.......+.. .......+..+..+.+... ..++.-++|+|+++.. +.+..|+..+........+|++|.+ .
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~ 162 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence 110000000000 0000011111111111111 2346678999999754 4577777766543445555555544 3
Q ss_pred hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch
Q 048831 170 QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL 227 (1051)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 227 (1051)
.+...... ..+.|.+.+++.++..+.+.+.+-..+.. ...+....|++.++|.+-
T Consensus 163 kI~~TI~S-RCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 163 KIPETILS-RCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hccHHHHh-hhheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHH
Confidence 33222111 12379999999999999888776433322 223667889999999883
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.49 E-value=5.5e-09 Score=108.45 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=89.4
Q ss_pred CCCCCCEEeccCCCCCC----cCCcccCCCCCccEEEccCCCCcCC-----CcccccccCCcEEEccCCCCCCCCCcccC
Q 048831 613 GLKSLKTLNLSGCCKLE----NVPDTLGQVESLEELDISGTATRRP-----PSSIFLMKNLKTLSFSGCNGPPSTASCHL 683 (1051)
Q Consensus 613 ~L~~L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~l~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 683 (1051)
.-+.|+++....|..-. .+...++..+.|+.+.+..|.+..- ...+.++++|+.|+|.+|......+.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~--- 231 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV--- 231 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH---
Confidence 34566666665543221 1223455667788888887775432 34566788888888888765432110
Q ss_pred CccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccc---c-ccCCCcCcEEeccCCCce-----eccccccC
Q 048831 684 NLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILS---D-ICNLHSLKELYLSGNNFV-----TLPASISG 754 (1051)
Q Consensus 684 ~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~---~-l~~l~~L~~L~L~~n~l~-----~lp~~~~~ 754 (1051)
.+...++.+++|+.|++++|.+...+... . -...|+|+.|.+.+|.++ .+-.++..
T Consensus 232 ---------------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e 296 (382)
T KOG1909|consen 232 ---------------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE 296 (382)
T ss_pred ---------------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence 11233566788999999999886543222 1 224789999999999887 34446677
Q ss_pred CCCCCEEeccCCc
Q 048831 755 LFNLKYLELEDCK 767 (1051)
Q Consensus 755 l~~L~~L~l~~c~ 767 (1051)
.+.|..|+|++|.
T Consensus 297 k~dL~kLnLngN~ 309 (382)
T KOG1909|consen 297 KPDLEKLNLNGNR 309 (382)
T ss_pred chhhHHhcCCccc
Confidence 8999999999987
No 62
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=3.1e-06 Score=100.98 Aligned_cols=202 Identities=19% Similarity=0.118 Sum_probs=114.8
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc---ceEEEeeh-hhhhhcCCCH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY---ASSFLADV-RERFEKEGSV 95 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~-~~~~~~~~~~ 95 (1051)
.|....++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+..... ..|..+.. ........
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~-- 87 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF-- 87 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC--
Confidence 4556788999999999999888654 22356789999999999999999987643210 01111100 00000000
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHH-hhCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-h
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGS-RLRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQ-L 171 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~ 171 (1051)
..+ -.+.......+.+..+....+.. -..+++-++|||+++.. ...+.|+..+....+..++|++|.+.. +
T Consensus 88 ~Dv-----iEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kL 162 (944)
T PRK14949 88 VDL-----IEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (944)
T ss_pred ceE-----EEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhc
Confidence 000 00000000000111111111111 12356779999999654 456777766655456677776665543 3
Q ss_pred hHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch-HHHHH
Q 048831 172 LVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL-ALKVL 232 (1051)
Q Consensus 172 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 232 (1051)
...... ....|++++++.++..+++.+.+-.... ....+.++.|++.++|.|- |+..+
T Consensus 163 l~TIlS-RCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 163 PVTVLS-RCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred hHHHHH-hheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222111 1238999999999999999876643222 2223667889999999885 44443
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=1.6e-06 Score=100.37 Aligned_cols=197 Identities=19% Similarity=0.168 Sum_probs=112.7
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccce---EEEe-ehhhhhhcCCCH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYAS---SFLA-DVRERFEKEGSV 95 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~---~~~~-~~~~~~~~~~~~ 95 (1051)
.|....++||.+...+.|..++..+. -.+.+.++|+.|+||||+|+.+++.+--..... |-.+ +++.......
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~h-- 86 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRF-- 86 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCC--
Confidence 45667889999999999999987542 246889999999999999999998653211000 0000 0000000000
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSR----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDK 169 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~ 169 (1051)
.+ +...........++....+... ..++.-++|+|+|+.. .....++..+....++.++|++|.+.
T Consensus 87 pD--------viEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 87 ID--------LIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred Cc--------eEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 00 0000000000111111111111 1345668999999764 34556665555445667888888765
Q ss_pred hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 170 QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.-....-......+++++++.++..+.+.+.+-+.+.. ...+....|++.++|.+-.+
T Consensus 159 ~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 159 QKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 32211111222389999999999999988776443322 22356778999999977443
No 64
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.45 E-value=1.3e-06 Score=98.59 Aligned_cols=175 Identities=15% Similarity=0.226 Sum_probs=100.7
Q ss_pred CCCCccccchhHHHHHHHHhcCC-----------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhh
Q 048831 22 KTVKELVGIESRLEKLRFLMGTG-----------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFE 90 (1051)
Q Consensus 22 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 90 (1051)
....++.|++..+++|.+.+... -...+-|.|+|++|+|||++|+++++.....|-.. . .
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---~-~----- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---V-G----- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec---c-h-----
Confidence 34467899999999998876421 12245699999999999999999999876553211 0 0
Q ss_pred cCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh-hCCCeEEEEEeCCCCHH----------------HHHHHhcCC
Q 048831 91 KEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR-LRQQKVLLVIDDVADVE----------------QLQSLAGKR 153 (1051)
Q Consensus 91 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-l~~k~~LlVlDdv~~~~----------------~~~~l~~~~ 153 (1051)
..+....... .......+.+. -...+.+|+|||++... .+..+...+
T Consensus 190 -----~~l~~~~~g~-----------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~l 253 (364)
T TIGR01242 190 -----SELVRKYIGE-----------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEL 253 (364)
T ss_pred -----HHHHHHhhhH-----------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHh
Confidence 1111111000 00111111111 13467899999986531 122333222
Q ss_pred CCC--CCCCEEEEEeCChhhhHh-----hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCc
Q 048831 154 DWF--GLGSRILITTRDKQLLVA-----HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLP 226 (1051)
Q Consensus 154 ~~~--~~gs~IiiTTR~~~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 226 (1051)
... ..+.+||.||........ ...+. .+.+...+.++..++|..++.+.....+ .....+++.+.|..
T Consensus 254 d~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~--~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 254 DGFDPRGNVKVIAATNRPDILDPALLRPGRFDR--IIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred hCCCCCCCEEEEEecCChhhCChhhcCcccCce--EEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 211 235678888875432211 12233 7999999999999999988754433221 11345666776654
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.45 E-value=7.8e-07 Score=97.67 Aligned_cols=74 Identities=30% Similarity=0.600 Sum_probs=48.1
Q ss_pred CCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEE
Q 048831 566 SMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELD 645 (1051)
Q Consensus 566 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 645 (1051)
.+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+ .++|+.|.+++|..+..+|. +|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEE
Confidence 34566777777777777762 23468888888887777777644 35778888887766666654 355555
Q ss_pred ccCCC
Q 048831 646 ISGTA 650 (1051)
Q Consensus 646 l~~~~ 650 (1051)
+..+.
T Consensus 119 L~~n~ 123 (426)
T PRK15386 119 IKGSA 123 (426)
T ss_pred eCCCC
Confidence 55443
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.44 E-value=8e-09 Score=109.55 Aligned_cols=277 Identities=25% Similarity=0.334 Sum_probs=143.1
Q ss_pred CCCEEecCCCCCCCCCC--C-CCCCCccCEEEeeCCCCChhhh--hhhccCCCCcEEecCCCCCCCccCCCCCCCCCccc
Q 048831 465 TLKVMKLSHSENLIKTP--N-FIEVPNLEVLDLKGCTSLREIH--SSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVT 539 (1051)
Q Consensus 465 ~L~~L~L~~~~~l~~~~--~-~~~l~~L~~L~L~~c~~l~~l~--~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~ 539 (1051)
.|+.|.++++.....-+ . ..++||+++|.+.+|..+.+-. ..-..+.+|++|++..|.+++.... ...
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L-------k~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL-------KYL 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH-------HHH
Confidence 45666666665443322 1 4467888888888888655422 2223577888888888887765321 111
Q ss_pred cccCceecEEeeeCCCCCCc--CchhhCCCCCCCEEEecCccCcc---cCccccCCCCCCEEecCCCCCCCccc--cccc
Q 048831 540 ISSLKCLRTLKLSGCSKLKK--FPAIVASMEDLSELYLDGTYITE---VPSSIELLTGLELLNLNDCKNLVRLP--NSIN 612 (1051)
Q Consensus 540 l~~l~~L~~L~Ls~c~~~~~--~p~~~~~l~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~~~~l~~lp--~~i~ 612 (1051)
...+++|++|++++|+.+.. +.....++.+++.+.+.||.-.+ +-..-....-+..+++..|..+.... ..-.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 22478888899988876654 22333444445555444432111 11111223334444444443332211 1112
Q ss_pred CCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCcccccccc
Q 048831 613 GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRK 692 (1051)
Q Consensus 613 ~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 692 (1051)
.+..|+.|..++|......+-+ .-..+.++|+.|-+.+|.........
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~---------------------aLg~~~~~L~~l~l~~c~~fsd~~ft----------- 339 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLW---------------------ALGQHCHNLQVLELSGCQQFSDRGFT----------- 339 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHH---------------------HHhcCCCceEEEeccccchhhhhhhh-----------
Confidence 3444555555555443221110 01123466666666666543332111
Q ss_pred CCCCccccCCCCCCCCCCCEEeccCCCCCCcc-ccccccCCCcCcEEeccCCCce------eccccccCCCCCCEEeccC
Q 048831 693 SSCPVALMLPSLSGLCSLSKLDLSDCGLREGA-ILSDICNLHSLKELYLSGNNFV------TLPASISGLFNLKYLELED 765 (1051)
Q Consensus 693 ~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~-~~~~l~~l~~L~~L~L~~n~l~------~lp~~~~~l~~L~~L~l~~ 765 (1051)
.--.+.+.|+.+++..|...... +...-.+++.|+.|.|++|... .+...-..+..|..|.+++
T Consensus 340 ---------~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n 410 (483)
T KOG4341|consen 340 ---------MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN 410 (483)
T ss_pred ---------hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecC
Confidence 11234566777777777543222 3333345677788877776432 1233345677788888888
Q ss_pred CccccccC----CCCCCCceEeecCCcc
Q 048831 766 CKRLQSLP----QLPPNVIKVSVNGCAS 789 (1051)
Q Consensus 766 c~~L~~lp----~lp~~L~~L~i~~C~~ 789 (1051)
||.+..-. ...++|+.+++.+|..
T Consensus 411 ~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 411 CPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CCCchHHHHHHHhhCcccceeeeechhh
Confidence 88654321 1223555555555544
No 67
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1e-05 Score=93.89 Aligned_cols=201 Identities=15% Similarity=0.123 Sum_probs=111.4
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccc---eEEEe-ehhhhhh--cCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYA---SSFLA-DVRERFE--KEG 93 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~-~~~~~~~--~~~ 93 (1051)
.|....++||.+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+...... .|-.+ .+..... ..+
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 4566788999999999999888654 233568899999999999999999865421110 00000 0000000 000
Q ss_pred CHHHHHHHHHHHHhccCCCccccchhhHHHHHHh-hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR-LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDK- 169 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~- 169 (1051)
+ ..+ .........+..+..+.+... ..+++-++|+|+++.. ...+.|+..+....+...+|++|.+.
T Consensus 90 l-iei--------daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~ 160 (546)
T PRK14957 90 L-IEI--------DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160 (546)
T ss_pred e-EEe--------ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChh
Confidence 0 000 000000000111111111111 2346668999999754 44666766665545566676655543
Q ss_pred hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCc-hHHHHHH
Q 048831 170 QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLP-LALKVLG 233 (1051)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~g 233 (1051)
.+.... .....++++.+++.++..+.+.+.+-..+. ....+....|++.++|.+ -|+..+-
T Consensus 161 kil~tI-~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 161 KIPVTI-LSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred hhhhhH-HHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 232221 111238999999999998888775533222 222356678899999966 4555443
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3e-06 Score=97.82 Aligned_cols=197 Identities=15% Similarity=0.099 Sum_probs=113.1
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc---c-----eEEEe-ehhhhhh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY---A-----SSFLA-DVRERFE 90 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~---~-----~~~~~-~~~~~~~ 90 (1051)
.|....++||.+.-++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..-. . -|-.+ .++....
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 45567889999999999999987542 3467899999999999999999986642100 0 00000 0000000
Q ss_pred cCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEE
Q 048831 91 KEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILI 164 (1051)
Q Consensus 91 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii 164 (1051)
. .. .+ ++ .+. .......++..+.+.+. ..++.-++|||+++.. .....|+..+..-.++.++|+
T Consensus 90 G-~h-pD----vi-EId---Aas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FIL 159 (700)
T PRK12323 90 G-RF-VD----YI-EMD---AASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFIL 159 (700)
T ss_pred C-CC-Cc----ce-Eec---ccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEE
Confidence 0 00 00 00 000 00001112222222211 1345568999999765 456777776665556677666
Q ss_pred EeCCh-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHH
Q 048831 165 TTRDK-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALK 230 (1051)
Q Consensus 165 TTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 230 (1051)
+|.+. .+..... ..-..+.+..++.++..+.+.+.+....... ..+..+.|++.++|.|....
T Consensus 160 aTtep~kLlpTIr-SRCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 160 ATTDPQKIPVTVL-SRCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred EeCChHhhhhHHH-HHHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 66554 3322111 1113799999999999998887664332222 23456788999999985443
No 69
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.42 E-value=1.1e-06 Score=91.64 Aligned_cols=180 Identities=20% Similarity=0.302 Sum_probs=107.5
Q ss_pred CCCCCCCccccchhHHHH---HHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCH
Q 048831 19 TEPKTVKELVGIESRLEK---LRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSV 95 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 95 (1051)
..|....++||.+.-+.+ |.+++.. +....+.+||++|+||||||+.+...-+.+- ..|+. .+........+
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-lSAt~a~t~dv 206 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-LSATNAKTNDV 206 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHc--CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-EeccccchHHH
Confidence 667777899998876654 4455543 5677888999999999999999998655542 22332 21111111111
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCC--CHHHHHHHhcCCCCCCCCCEEEE--EeCChhh
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVA--DVEQLQSLAGKRDWFGLGSRILI--TTRDKQL 171 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~~ 171 (1051)
+++ .++.. -...+.++|.+|.+|.|. +..|-+.+++.. ..|.-++| ||.++..
T Consensus 207 R~i----fe~aq----------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 207 RDI----FEQAQ----------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSF 263 (554)
T ss_pred HHH----HHHHH----------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCcc
Confidence 222 22211 011245688899999994 555666666653 46777666 7777644
Q ss_pred hHhhC-CCCcceEEcCCCChhHHHHHHHHhhh--cC-CC---Cch-----HHHHHHHHHHHhcCCCc
Q 048831 172 LVAHE-VDEEHILNLDVLNDDEALQLFSMKAF--KS-HQ---PVE-----EYVELSKRVLNYASGLP 226 (1051)
Q Consensus 172 ~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~--~~-~~---~~~-----~~~~~~~~i~~~~~G~P 226 (1051)
..... ...-.++.+++|..++...++.+..- ++ .. +.+ ....+.+-++..++|-.
T Consensus 264 qln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 264 QLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred chhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 22211 12223899999999999998887431 11 11 111 23345566666777754
No 70
>PRK08727 hypothetical protein; Validated
Probab=98.42 E-value=7.1e-06 Score=86.08 Aligned_cols=172 Identities=17% Similarity=0.169 Sum_probs=96.9
Q ss_pred CCCccccchhH-HHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHH
Q 048831 23 TVKELVGIESR-LEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQ 101 (1051)
Q Consensus 23 ~~~~~vGr~~~-~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (1051)
..+.||+.... +..+..+.. + .....+.|+|.+|+|||+||+++++....+...+.|+. ..+ ....
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~----------~~~~ 83 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQA----------AAGR 83 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH----------hhhh
Confidence 45667765543 333333332 2 22356999999999999999999988776654455554 211 1111
Q ss_pred HHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---HHHH-HHhcCCCC-CCCCCEEEEEeCChhhhH---
Q 048831 102 LLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV---EQLQ-SLAGKRDW-FGLGSRILITTRDKQLLV--- 173 (1051)
Q Consensus 102 ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~---~~~~-~l~~~~~~-~~~gs~IiiTTR~~~~~~--- 173 (1051)
+.. +.+.+. +.-+||+||++.. ..++ .+...+.. ..+|..||+|++...-.-
T Consensus 84 ~~~-------------------~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~ 143 (233)
T PRK08727 84 LRD-------------------ALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALV 143 (233)
T ss_pred HHH-------------------HHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhh
Confidence 100 011111 2248999999643 1222 22221111 134677999998642100
Q ss_pred --hh--CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 174 --AH--EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 174 --~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.. .......+++++++.++..+++.+++...... -.++....|++++.|-.-.+
T Consensus 144 ~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~--l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 144 LPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLA--LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred hHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 00 11112389999999999999999877543322 22356677777777655443
No 71
>PF13173 AAA_14: AAA domain
Probab=98.42 E-value=6.9e-07 Score=84.25 Aligned_cols=122 Identities=17% Similarity=0.146 Sum_probs=76.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR 127 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 127 (1051)
.+++.|.|+.|+||||++++++.+.. .-...+++. ...... . .... .+ ..+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~--------~-~~~~------------~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD--------R-RLAD------------PD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH--------H-HHhh------------hh-hHHHHHHh
Confidence 36899999999999999999998765 112233332 222110 0 0000 00 12233333
Q ss_pred hCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhHhhC----CCCcceEEcCCCChhHH
Q 048831 128 LRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQLLVAHE----VDEEHILNLDVLNDDEA 193 (1051)
Q Consensus 128 l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~----~~~~~~~~l~~L~~~ea 193 (1051)
...++.+|+||+|....+|......+...++..+|++|+.......... ......+++.||+..|-
T Consensus 58 ~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3447788999999988888877666555556789999999876653311 12223689999998763
No 72
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.41 E-value=3.4e-07 Score=93.15 Aligned_cols=50 Identities=34% Similarity=0.502 Sum_probs=35.6
Q ss_pred ccccchhHHHHHHHHhcC-CCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 26 ELVGIESRLEKLRFLMGT-GSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~-~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
.||||+.+++++...+.. .....+.+.|+|.+|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 23456899999999999999999999988776
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=9.5e-06 Score=93.29 Aligned_cols=200 Identities=19% Similarity=0.138 Sum_probs=109.0
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc----ccceEEEee-hhhhhhcCCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE----FYASSFLAD-VRERFEKEGS 94 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~~-~~~~~~~~~~ 94 (1051)
.|....++||.+.-.+.|...+..+. -.+.+.++|++|+||||+|+.+++.+... +.. +-.+. +.........
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~p-c~~c~~c~~i~~g~~~ 86 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEP-CNECRACRSIDEGTFM 86 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCC-CcccHHHHHHhcCCCC
Confidence 56677889999888888888776542 23568999999999999999999865321 100 00000 0000000000
Q ss_pred HHHHHHHHHHHHhccCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC
Q 048831 95 VISLQKQLLSNLLKLGDISIWHVDDGINIIGSR-----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTR 167 (1051)
Q Consensus 95 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 167 (1051)
.+. .+. . ......++. ..+.+. ..+++-++|+|+++.. .+.+.++..+....+...+|++|.
T Consensus 87 ------dv~-el~-a--a~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilatt 155 (472)
T PRK14962 87 ------DVI-ELD-A--ASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATT 155 (472)
T ss_pred ------ccE-EEe-C--cccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 000 000 0 000000111 111111 2245668999999754 345556555543334445554554
Q ss_pred C-hhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCC-chHHHHHHHH
Q 048831 168 D-KQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGL-PLALKVLGSF 235 (1051)
Q Consensus 168 ~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~g~~ 235 (1051)
+ ..+..... .....+++.+++.++....+.+.+...+... ..+....|+++++|. +.|+..+..+
T Consensus 156 n~~kl~~~L~-SR~~vv~f~~l~~~el~~~L~~i~~~egi~i--~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 156 NLEKVPPTII-SRCQVIEFRNISDELIIKRLQEVAEAEGIEI--DREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred ChHhhhHHHh-cCcEEEEECCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4 33322222 2224899999999999999888774333222 235677788877654 5666666553
No 74
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=9.2e-06 Score=89.74 Aligned_cols=180 Identities=15% Similarity=0.183 Sum_probs=108.2
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc------cccceEEEeehhhhhhcCCCHHH
Q 048831 24 VKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH------EFYASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
..+++|.+.-.+.+...+..+ .-.+...++|+.|+||||+|+.++..+-. +.+...|.. . +......+
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~----~~~~i~v~ 76 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I----NKKSIGVD 76 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c----cCCCCCHH
Confidence 356889998889999998654 23468899999999999999999986532 122212211 0 01111011
Q ss_pred HHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCC--CCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhHhh
Q 048831 98 LQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDV--ADVEQLQSLAGKRDWFGLGSRILITTRDKQLLVAH 175 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv--~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~ 175 (1051)
-.+++...+.. .-..+++=++|+|++ .+...+..++..+..-.+++.+|++|.+.......
T Consensus 77 ~ir~~~~~~~~-----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 77 DIRNIIEEVNK-----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred HHHHHHHHHhc-----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 11222222110 001233445556665 45566788888777667788998888765422111
Q ss_pred CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 176 EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 176 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
-....+.+++.+++.++....+.+.. . ... .+.++.++.+++|.|..+..+
T Consensus 140 I~SRc~~~~~~~~~~~~~~~~l~~~~-~-~~~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 140 IKSRCQIYKLNRLSKEEIEKFISYKY-N-DIK----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HHhhceeeeCCCcCHHHHHHHHHHHh-c-CCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 01112389999999999988886543 1 111 234678899999998765433
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=1.8e-06 Score=100.96 Aligned_cols=197 Identities=16% Similarity=0.130 Sum_probs=109.8
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccc---eEEEe-ehhhhhhcCCCH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYA---SSFLA-DVRERFEKEGSV 95 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~-~~~~~~~~~~~~ 95 (1051)
.|....++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+-..-.. .|-.+ .++...... .
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~-~- 87 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGR-Y- 87 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccC-c-
Confidence 45667889999999999999987642 34678999999999999999998864321100 00000 000000000 0
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCCh
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSR----LRQQKVLLVIDDVADVE--QLQSLAGKRDWFGLGSRILITTRDK 169 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~ 169 (1051)
.++ + .+. .......+.....+... ..+++-++|+|+++... ....|+..+.......++|++|.+.
T Consensus 88 ~Dv----l-Eid---aAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~ 159 (709)
T PRK08691 88 VDL----L-EID---AASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (709)
T ss_pred cce----E-EEe---ccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 000 0 000 00000111111111110 12455689999997653 2444554444334567777777654
Q ss_pred h-hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHH
Q 048831 170 Q-LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALK 230 (1051)
Q Consensus 170 ~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 230 (1051)
. +.... ......+.+.+++.++..+.+.+.+-+.+... ..+....|++.++|.+.-+.
T Consensus 160 ~kL~~TI-rSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 160 HKVPVTV-LSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred cccchHH-HHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHHHH
Confidence 3 21111 11112688889999999999987764433222 23567889999999884443
No 76
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.38 E-value=8.5e-06 Score=92.37 Aligned_cols=186 Identities=14% Similarity=0.137 Sum_probs=112.3
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc----ccc-----------------
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE----FYA----------------- 78 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~----f~~----------------- 78 (1051)
.|....+++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.++..+... +..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 45567789999999999999886542 34678999999999999999999876422 110
Q ss_pred eEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh-hCCCeEEEEEeCCCCH--HHHHHHhcCCCC
Q 048831 79 SSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR-LRQQKVLLVIDDVADV--EQLQSLAGKRDW 155 (1051)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~ 155 (1051)
...+... . ..- ....+++...+. .. ..+++-++|+|+++.. .....+...+..
T Consensus 88 ~~~~~~~----~-~~~-~~~~~~l~~~~~------------------~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~ 143 (355)
T TIGR02397 88 VIEIDAA----S-NNG-VDDIREILDNVK------------------YAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE 143 (355)
T ss_pred EEEeecc----c-cCC-HHHHHHHHHHHh------------------cCcccCCceEEEEeChhhcCHHHHHHHHHHHhC
Confidence 0011000 0 000 011111211111 00 1234458889998654 445566555544
Q ss_pred CCCCCEEEEEeCChh-hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHH
Q 048831 156 FGLGSRILITTRDKQ-LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLG 233 (1051)
Q Consensus 156 ~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g 233 (1051)
..+...+|++|.+.. +..... .....+++.+++.++..+++...+-..+...+ .+.+..+++.++|.|..+....
T Consensus 144 ~~~~~~lIl~~~~~~~l~~~l~-sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 144 PPEHVVFILATTEPHKIPATIL-SRCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CccceeEEEEeCCHHHHHHHHH-hheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHHHH
Confidence 445667777775543 222111 11237899999999999999887644332222 3677888999999986655443
No 77
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=9.2e-06 Score=89.85 Aligned_cols=200 Identities=18% Similarity=0.165 Sum_probs=113.9
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc----ccceEEEeehhhhhhcCCC
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE----FYASSFLADVRERFEKEGS 94 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~~~~~~~~~~~~ 94 (1051)
..|.....++|.+...+.+...+..+. -...+.|+|+.|+||||+|+.++..+-.. +....... ..+.
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~-------~~~~ 88 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD-------PDPA 88 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC-------CCCC
Confidence 356677889999999999999887642 34579999999999999999999876442 11110000 0000
Q ss_pred HHHHHHHHHHH-------Hhc---cCC---CccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHHhcCCC
Q 048831 95 VISLQKQLLSN-------LLK---LGD---ISIWHVDDGINIIGSRL-----RQQKVLLVIDDVADV--EQLQSLAGKRD 154 (1051)
Q Consensus 95 ~~~l~~~ll~~-------l~~---~~~---~~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~ 154 (1051)
......+... +.. .+. .....+++ +..+.+.+ .+++-++|+|+++.. ...+.++..+.
T Consensus 89 -c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE 166 (351)
T PRK09112 89 -SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE 166 (351)
T ss_pred -CHHHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 0111111111 000 000 00011122 22333333 245668999999754 33555555544
Q ss_pred CCCCCCEEEEEe-CChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHH
Q 048831 155 WFGLGSRILITT-RDKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLG 233 (1051)
Q Consensus 155 ~~~~gs~IiiTT-R~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g 233 (1051)
...++..+|++| +...+...... ....+.+.+++.++..+++...+.... ...+.+..+++.++|.|.....+.
T Consensus 167 Epp~~~~fiLit~~~~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 167 EPPARALFILISHSSGRLLPTIRS-RCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred cCCCCceEEEEECChhhccHHHHh-hccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 334455555544 44333322221 224899999999999999987432111 113456789999999998665543
No 78
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.37 E-value=1.1e-05 Score=84.73 Aligned_cols=171 Identities=19% Similarity=0.215 Sum_probs=95.1
Q ss_pred Cccc-cchh-HHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHH
Q 048831 25 KELV-GIES-RLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQL 102 (1051)
Q Consensus 25 ~~~v-Gr~~-~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 102 (1051)
+.|+ |... .+..+.++.... ..+.+.|+|+.|+|||+||+++++........+.|+. +.... ....++
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~-------~~~~~~ 91 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKRA-------WFVPEV 91 (235)
T ss_pred cccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHh-------hhhHHH
Confidence 4454 6333 334444444322 3357899999999999999999987765433344443 22110 000011
Q ss_pred HHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---HHHHHHh-cCCCC-CCCC-CEEEEEeCChhh-----
Q 048831 103 LSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV---EQLQSLA-GKRDW-FGLG-SRILITTRDKQL----- 171 (1051)
Q Consensus 103 l~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~---~~~~~l~-~~~~~-~~~g-s~IiiTTR~~~~----- 171 (1051)
.+.+.. --+|++||++.. .+|+... ..+.. ...| .++|+||+....
T Consensus 92 ----------------------~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~ 148 (235)
T PRK08084 92 ----------------------LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLG 148 (235)
T ss_pred ----------------------HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcc
Confidence 111111 137889999653 3333211 11111 1123 479999985521
Q ss_pred ----hHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 172 ----LVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 172 ----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
...+... .+++++++++++-.+++.+++..... .-.+++..-|++++.|..-++..+
T Consensus 149 ~~~L~SRl~~g--~~~~l~~~~~~~~~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 149 LPDLASRLDWG--QIYKLQPLSDEEKLQALQLRARLRGF--ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred cHHHHHHHhCC--ceeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 1122222 38999999999999999876643322 222366777888887766554443
No 79
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=4.7e-06 Score=96.09 Aligned_cols=193 Identities=17% Similarity=0.153 Sum_probs=111.2
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc-------ceEEEe-ehhhhhhc
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY-------ASSFLA-DVRERFEK 91 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-------~~~~~~-~~~~~~~~ 91 (1051)
.|....++||.+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.... ..|..+ .+......
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 4566788999999999888877654 23467899999999999999999986532210 011111 00000000
Q ss_pred --CCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEE
Q 048831 92 --EGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRIL 163 (1051)
Q Consensus 92 --~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii 163 (1051)
.++ . .+..... ...++....+... +.+++-++|+|+++.. ..+..|...+....+...+|
T Consensus 95 ~h~Dv-~--------eidaas~---~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI 162 (507)
T PRK06645 95 NHPDI-I--------EIDAASK---TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFI 162 (507)
T ss_pred CCCcE-E--------EeeccCC---CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEE
Confidence 000 0 0000000 0111111111111 2346668999999764 44677766655444566666
Q ss_pred EEe-CChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchH
Q 048831 164 ITT-RDKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLA 228 (1051)
Q Consensus 164 iTT-R~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 228 (1051)
++| +...+...... ....+++.+++.++..+.+.+.+...+... ..+....|++.++|.+--
T Consensus 163 ~aTte~~kI~~tI~S-Rc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 163 FATTEVQKIPATIIS-RCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSARD 225 (507)
T ss_pred EEeCChHHhhHHHHh-cceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 544 44444332221 123799999999999999998875433222 235567789999997733
No 80
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.35 E-value=7.5e-06 Score=86.09 Aligned_cols=180 Identities=19% Similarity=0.199 Sum_probs=98.9
Q ss_pred CCCCCCCccc-cchhHH-HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHH
Q 048831 19 TEPKTVKELV-GIESRL-EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVI 96 (1051)
Q Consensus 19 ~~~~~~~~~v-Gr~~~~-~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 96 (1051)
..+...++|+ |...+. ..+.++... ....+.+.|+|..|+|||+||+++++.....-....++. ....
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~~-------- 81 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AASP-------- 81 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHHh--------
Confidence 3444456666 554444 344454442 233467899999999999999999987644322334443 1111
Q ss_pred HHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH--HHHHHhcCCCC-CCCCC-EEEEEeCChhhh
Q 048831 97 SLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE--QLQSLAGKRDW-FGLGS-RILITTRDKQLL 172 (1051)
Q Consensus 97 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~-~~~gs-~IiiTTR~~~~~ 172 (1051)
...+ .... ..-+||+||++... +.+.+...+.. ...+. .||+|++.....
T Consensus 82 --~~~~-----------------------~~~~-~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~ 135 (227)
T PRK08903 82 --LLAF-----------------------DFDP-EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLA 135 (227)
T ss_pred --HHHH-----------------------hhcc-cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHh
Confidence 0000 0111 23368889996432 22223222211 12344 366666543211
Q ss_pred Hhh------CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHHHh
Q 048831 173 VAH------EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGSFL 236 (1051)
Q Consensus 173 ~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~~L 236 (1051)
... .......+++.++++++-.+++.+.+-..... -.+++.+.+++...|++..+..+...+
T Consensus 136 ~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~--l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 136 LPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQ--LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 100 11112389999999998777777654322222 223677788889999998887766554
No 81
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.35 E-value=3.6e-07 Score=89.62 Aligned_cols=124 Identities=22% Similarity=0.286 Sum_probs=45.4
Q ss_pred CCCCCcEEEecCcccCC--cccccCcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccccc-cCCCCCCEEecC
Q 048831 396 LMTNLRFLNIGNVQLPE--GLEYLSNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKGI-KPLNTLKVMKLS 472 (1051)
Q Consensus 396 ~~~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~-~~l~~L~~L~L~ 472 (1051)
+..++|.|++.++.++. .+.....+|+.|++++|.++.++..-.+.+|++|++++|++..+.+++ ..+++|+.|+++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 34467888888888763 444333478888888888888886668888888888888888886655 368888888888
Q ss_pred CCCC--CCCCCCCCCCCccCEEEeeCCCCChh---hhhhhccCCCCcEEecC
Q 048831 473 HSEN--LIKTPNFIEVPNLEVLDLKGCTSLRE---IHSSLLRHNKLILLNLK 519 (1051)
Q Consensus 473 ~~~~--l~~~~~~~~l~~L~~L~L~~c~~l~~---l~~si~~l~~L~~L~L~ 519 (1051)
+|+. +..+..+..+++|++|+|.+|+-... -..-+..+++|+.||-.
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 8763 33344466778888888887653221 11133445555555543
No 82
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.34 E-value=4.6e-06 Score=81.11 Aligned_cols=123 Identities=19% Similarity=0.185 Sum_probs=70.4
Q ss_pred ccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHh
Q 048831 28 VGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLL 107 (1051)
Q Consensus 28 vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 107 (1051)
+|++..+.++...+... ..+.+.|+|.+|+|||++|+++++.+.... ..+++.+.......... .... ...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~-~~v~~~~~~~~~~~~~~----~~~~-~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPG-APFLYLNASDLLEGLVV----AELF-GHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCC-CCeEEEehhhhhhhhHH----HHHh-hhh-
Confidence 48889999998888653 346899999999999999999999875332 23333333332211000 0000 000
Q ss_pred ccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-----HHHHHHhcCCCCC---CCCCEEEEEeCChh
Q 048831 108 KLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV-----EQLQSLAGKRDWF---GLGSRILITTRDKQ 170 (1051)
Q Consensus 108 ~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~IiiTTR~~~ 170 (1051)
............++.++|+||++.. ..+..+....... ..+.+||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111222456789999999853 2233333332221 35778888888654
No 83
>PTZ00202 tuzin; Provisional
Probab=98.34 E-value=4.7e-06 Score=90.65 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=103.3
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCC-CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGS-TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
..|++...|+||+.++.+|...|...+ ...++++|.|++|+|||||++.+..... ...++.+.+. . .+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNprg------~-eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVRG------T-ED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCCC------H-HH
Confidence 567888999999999999999997433 4457999999999999999999997654 2355555442 2 67
Q ss_pred HHHHHHHHHhccCCCccccchhhHHHHHHhh-----C-CCeEEEEEeCC--CCHHH----HHHHhcCCCCCCCCCEEEEE
Q 048831 98 LQKQLLSNLLKLGDISIWHVDDGINIIGSRL-----R-QQKVLLVIDDV--ADVEQ----LQSLAGKRDWFGLGSRILIT 165 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l-----~-~k~~LlVlDdv--~~~~~----~~~l~~~~~~~~~gs~IiiT 165 (1051)
+...++.+++-... ....++...|.+.+ . +++.+||+-=- .+..- .-.|+.. ..-+.|++-
T Consensus 325 lLr~LL~ALGV~p~---~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~d----rr~ch~v~e 397 (550)
T PTZ00202 325 TLRSVVKALGVPNV---EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACD----RRLCHVVIE 397 (550)
T ss_pred HHHHHHHHcCCCCc---ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHcc----chhheeeee
Confidence 77888888773111 12234444444433 2 66777776522 22211 1222222 345677765
Q ss_pred eCChhhhHhh-CCCCcceEEcCCCChhHHHHHHHHh
Q 048831 166 TRDKQLLVAH-EVDEEHILNLDVLNDDEALQLFSMK 200 (1051)
Q Consensus 166 TR~~~~~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~ 200 (1051)
---+.+.... ..+....|.+..++.++|.++-.+.
T Consensus 398 vpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 398 VPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 5443332211 1223337999999999998887654
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.34 E-value=1.7e-08 Score=107.13 Aligned_cols=260 Identities=21% Similarity=0.248 Sum_probs=158.3
Q ss_pred ccCCCCCCEEecCCCCCCCCCCC--C-CCCCccCEEEeeCCCCChhhhh--hhccCCCCcEEecCCCCCCCccCCCCCCC
Q 048831 460 IKPLNTLKVMKLSHSENLIKTPN--F-IEVPNLEVLDLKGCTSLREIHS--SLLRHNKLILLNLKGCTSLTTLPDCKNLS 534 (1051)
Q Consensus 460 ~~~l~~L~~L~L~~~~~l~~~~~--~-~~l~~L~~L~L~~c~~l~~l~~--si~~l~~L~~L~L~~c~~l~~l~~~~~l~ 534 (1051)
...+++++.|.+.+|..++...- + ..+++|++|+|..|.++....- -...+++|++|+++-|+.+.. .
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~----~--- 232 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG----N--- 232 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc----C---
Confidence 46788888888888875543221 2 2578899999999888776432 233578899999999887765 1
Q ss_pred CCccccccCceecEEeeeCCCCCCc--CchhhCCCCCCCEEEecCccC-cc--cCccccCCCCCCEEecCCCCCCCccc-
Q 048831 535 SLPVTISSLKCLRTLKLSGCSKLKK--FPAIVASMEDLSELYLDGTYI-TE--VPSSIELLTGLELLNLNDCKNLVRLP- 608 (1051)
Q Consensus 535 ~lp~~l~~l~~L~~L~Ls~c~~~~~--~p~~~~~l~~L~~L~L~~~~i-~~--lp~~i~~l~~L~~L~L~~~~~l~~lp- 608 (1051)
.+......++.|+.+.+.||...+. +-..-+.+..+.++++..|.. +. +-..-..+..|+.|+.++|......+
T Consensus 233 gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l 312 (483)
T KOG4341|consen 233 GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL 312 (483)
T ss_pred cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH
Confidence 1222334466688888888865543 223334455566666655532 22 11223457889999999998765543
Q ss_pred -ccccCCCCCCEEeccCCCCCCcCC--cccCCCCCccEEEccCCCCcC---CCcccccccCCcEEEccCCCCCCCCCccc
Q 048831 609 -NSINGLKSLKTLNLSGCCKLENVP--DTLGQVESLEELDISGTATRR---PPSSIFLMKNLKTLSFSGCNGPPSTASCH 682 (1051)
Q Consensus 609 -~~i~~L~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~l~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 682 (1051)
.-..+..+|+.|.+++|...+..- ..-.+.+.|+.+++..+.... +..--.+++.|+.|.+++|....+....+
T Consensus 313 ~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~ 392 (483)
T KOG4341|consen 313 WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH 392 (483)
T ss_pred HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh
Confidence 224567899999999998755421 122456778888877776322 22222346777777777776555431111
Q ss_pred CCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCC
Q 048831 683 LNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGN 743 (1051)
Q Consensus 683 ~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n 743 (1051)
+ ...-.++..|..|.|++|..........+..+++|+.+++-++
T Consensus 393 l-----------------~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 393 L-----------------SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred h-----------------hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 1 1112334566677777776655555555555666666666554
No 85
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2.5e-05 Score=91.92 Aligned_cols=197 Identities=16% Similarity=0.140 Sum_probs=110.4
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc----cce----EEE-eehhhhhh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF----YAS----SFL-ADVRERFE 90 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f----~~~----~~~-~~~~~~~~ 90 (1051)
.|....++||.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+--.- ... |-. ..++....
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDS 89 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHc
Confidence 3556788999988888899988764 2346789999999999999999987653210 000 000 00010000
Q ss_pred cCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEE
Q 048831 91 KEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILI 164 (1051)
Q Consensus 91 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii 164 (1051)
.. . .+ +. .+. .......++..+.+... ..++.-++|||+|+.. .....++..+..-.+..++|+
T Consensus 90 g~-h-~D----~~-eld---aas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL 159 (618)
T PRK14951 90 GR-F-VD----YT-ELD---AASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVL 159 (618)
T ss_pred CC-C-Cc----ee-ecC---cccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEE
Confidence 00 0 00 00 000 00001111111111111 1234558899999754 446667766654445667776
Q ss_pred EeCCh-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHH
Q 048831 165 TTRDK-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALK 230 (1051)
Q Consensus 165 TTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 230 (1051)
+|.+. .+..... .....+++++++.++..+.+.+.+...+...+ .+..+.|++.++|.+--+.
T Consensus 160 ~Ttd~~kil~TIl-SRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie--~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 160 ATTDPQKVPVTVL-SRCLQFNLRPMAPETVLEHLTQVLAAENVPAE--PQALRLLARAARGSMRDAL 223 (618)
T ss_pred EECCchhhhHHHH-HhceeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 66543 3222211 11238999999999999999877644333222 3567788899999774443
No 86
>PRK05642 DNA replication initiation factor; Validated
Probab=98.32 E-value=2.3e-05 Score=82.27 Aligned_cols=152 Identities=17% Similarity=0.229 Sum_probs=88.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL 128 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l 128 (1051)
..+.|||..|+|||+||+++++.+..+-..++|+. ..+. .... ..+.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~----------~~~~-------------------~~~~~~~ 95 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAEL----------LDRG-------------------PELLDNL 95 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHH----------Hhhh-------------------HHHHHhh
Confidence 67899999999999999999987765444445544 2111 1100 1122223
Q ss_pred CCCeEEEEEeCCCCH---HHHHH-HhcCCCC-CCCCCEEEEEeCChhhhHhh-------CCCCcceEEcCCCChhHHHHH
Q 048831 129 RQQKVLLVIDDVADV---EQLQS-LAGKRDW-FGLGSRILITTRDKQLLVAH-------EVDEEHILNLDVLNDDEALQL 196 (1051)
Q Consensus 129 ~~k~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~IiiTTR~~~~~~~~-------~~~~~~~~~l~~L~~~ea~~L 196 (1051)
++-. ++|+||+... .+|+. +...+.. ...|.+||+|++...-.-.. ......++++++++.++..++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3222 6788999632 23332 3222221 23467888888754211100 011123789999999999999
Q ss_pred HHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHH
Q 048831 197 FSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLG 233 (1051)
Q Consensus 197 f~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g 233 (1051)
+..++....... .+++.+-|++++.|..-++..+-
T Consensus 175 l~~ka~~~~~~l--~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 175 LQLRASRRGLHL--TDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHHH
Confidence 987664432222 23677778888777665554433
No 87
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=8.3e-06 Score=93.20 Aligned_cols=181 Identities=18% Similarity=0.157 Sum_probs=109.5
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc---------------------c
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY---------------------A 78 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~ 78 (1051)
.|....++||.+.-++.|...+..+. -.+.+.++|+.|+||||+|+.++..+--.+. .
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 45667889999999888888886542 2458999999999999999999875422111 1
Q ss_pred eEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh-hCCCeEEEEEeCCCCH--HHHHHHhcCCCC
Q 048831 79 SSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR-LRQQKVLLVIDDVADV--EQLQSLAGKRDW 155 (1051)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~ 155 (1051)
.+.+.. ....+ .+-.++++.... .. ..+++-++|+|+++.. +..+.|+..+..
T Consensus 87 v~eida----as~~~--vddIR~Iie~~~------------------~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe 142 (491)
T PRK14964 87 VIEIDA----ASNTS--VDDIKVILENSC------------------YLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE 142 (491)
T ss_pred EEEEec----ccCCC--HHHHHHHHHHHH------------------hccccCCceEEEEeChHhCCHHHHHHHHHHHhC
Confidence 111110 00000 011111111110 00 1235558999999654 346666666555
Q ss_pred CCCCCEEEEEeCCh-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchH
Q 048831 156 FGLGSRILITTRDK-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLA 228 (1051)
Q Consensus 156 ~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 228 (1051)
-.+..++|++|.+. .+..... .....+++.+++.++..+.+.+.+...+... ..+..+.|++.++|.+-.
T Consensus 143 Pp~~v~fIlatte~~Kl~~tI~-SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 143 PAPHVKFILATTEVKKIPVTII-SRCQRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMRN 213 (491)
T ss_pred CCCCeEEEEEeCChHHHHHHHH-HhheeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 55677777666443 3322211 1223799999999999999988775443322 235677899999987743
No 88
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.30 E-value=1.3e-05 Score=96.61 Aligned_cols=174 Identities=26% Similarity=0.343 Sum_probs=102.3
Q ss_pred CCCCCCccccchhHHH---HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHH
Q 048831 20 EPKTVKELVGIESRLE---KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVI 96 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 96 (1051)
.|...++++|++..+. .+.+.+.. +....+.|+|++|+||||+|+.+++.....|. .+..+ . .+. .
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~---~--~~i-~ 91 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV---L--AGV-K 91 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh---h--hhh-H
Confidence 4667788999998874 46666654 34567889999999999999999987765542 11110 0 010 1
Q ss_pred HHHHHHHHHHhccCCCccccchhhHHHHHHhh--CCCeEEEEEeCCCC--HHHHHHHhcCCCCCCCCCEEEEE--eCChh
Q 048831 97 SLQKQLLSNLLKLGDISIWHVDDGINIIGSRL--RQQKVLLVIDDVAD--VEQLQSLAGKRDWFGLGSRILIT--TRDKQ 170 (1051)
Q Consensus 97 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l--~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiT--TR~~~ 170 (1051)
.+ ++.+. ...+.+ .+++.++||||++. ..+.+.+.... ..|..++|+ |.+..
T Consensus 92 di-r~~i~------------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~ 149 (725)
T PRK13341 92 DL-RAEVD------------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPY 149 (725)
T ss_pred HH-HHHHH------------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChH
Confidence 11 11111 111111 24567999999964 45566666543 235555553 34331
Q ss_pred --hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcC-----CCCchHHHHHHHHHHHhcCCCch
Q 048831 171 --LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKS-----HQPVEEYVELSKRVLNYASGLPL 227 (1051)
Q Consensus 171 --~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~-----~~~~~~~~~~~~~i~~~~~G~PL 227 (1051)
+..... ....++++++++.++...++.+.+-.. .....-.++..+.|++++.|.--
T Consensus 150 ~~l~~aL~-SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 150 FEVNKALV-SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhhhhHhh-ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 111111 112379999999999999998765310 11122234567788888888653
No 89
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=3.7e-05 Score=90.74 Aligned_cols=193 Identities=18% Similarity=0.132 Sum_probs=110.8
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc---ceEEEeehhhhhhcCCCHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY---ASSFLADVRERFEKEGSVI 96 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~~~~~~~~~ 96 (1051)
.|....++||.+.-++.|...+..+. -...+.++|+.|+||||+|+.++..+-.... ..|-.+
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C------------- 76 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC------------- 76 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC-------------
Confidence 45677889999999999998887542 2356789999999999999999986533210 000000
Q ss_pred HHHHHHHHH-------HhccCCCccccchhhHHHHHH-hhCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEe
Q 048831 97 SLQKQLLSN-------LLKLGDISIWHVDDGINIIGS-RLRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITT 166 (1051)
Q Consensus 97 ~l~~~ll~~-------l~~~~~~~~~~~~~~~~~i~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT 166 (1051)
....++... +.........+..+....+.. -..+++-++|+|+++.. .....|+..+..-.+..++|++|
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~T 156 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 156 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEec
Confidence 001111000 000000001111111111111 12356678999999754 45666666555444566666666
Q ss_pred CCh-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 167 RDK-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 167 R~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.+. .+...... ....|.+.+++.++..+.+.+.+-...... ..+....|++.++|.+-.+
T Consensus 157 t~~~kLl~TI~S-RC~~~~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 157 TDPQKLPVTILS-RCLQFHLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRDA 217 (647)
T ss_pred CCccccchHHHh-hheEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 554 33222111 123899999999999999887653322222 2355678999999987533
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=7.2e-06 Score=95.06 Aligned_cols=199 Identities=18% Similarity=0.138 Sum_probs=107.9
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQ 99 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 99 (1051)
.|....+++|++..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+...-....-.+ .. -...
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C--g~--------C~sC 79 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC--NS--------CSVC 79 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--cc--------cHHH
Confidence 56677889999999999999886542 3467899999999999999999987632110000000 00 0000
Q ss_pred HHHHHHH----hccCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC
Q 048831 100 KQLLSNL----LKLGDISIWHVDDGINIIGSR-----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRD 168 (1051)
Q Consensus 100 ~~ll~~l----~~~~~~~~~~~~~~~~~i~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 168 (1051)
+.+.... ...........++.. .+.+. ..+++=++|+|+++.. .....|+..+....+...+|++|..
T Consensus 80 r~i~~~~h~DiieIdaas~igVd~IR-eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~ 158 (605)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIR-NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE 158 (605)
T ss_pred HHHHcCCCCceEEeccccccCHHHHH-HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 0100000 000000000111111 11111 1123335999999653 4455565544433445566655543
Q ss_pred h-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch-HHHHHH
Q 048831 169 K-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL-ALKVLG 233 (1051)
Q Consensus 169 ~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~g 233 (1051)
. .+..... .....+++.+++.++....+...+-..+...+ .+.+..+++.++|.+- |+..+-
T Consensus 159 ~~KLl~TI~-SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is--~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 159 FQKIPLTII-SRCQRYNFKKLNNSELQELLKSIAKKEKIKIE--DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hHhhhHHHH-hhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHHH
Confidence 3 3322211 11237999999999999888876643322111 3557788899999664 444433
No 91
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=1.3e-05 Score=89.99 Aligned_cols=189 Identities=13% Similarity=0.056 Sum_probs=105.4
Q ss_pred CCccccchhHHHHHHHHhcCCCC--------CeeEEEEEcCCcchHHHHHHHHHHHHhccccc--eEEEe-ehhhhh--h
Q 048831 24 VKELVGIESRLEKLRFLMGTGST--------DVRMIGIWGMGGLGKTTLARVVYDLISHEFYA--SSFLA-DVRERF--E 90 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~-~~~~~~--~ 90 (1051)
..+++|.+.-++.|.+.+..+.. -.+.+.++|+.|+|||++|+.++..+--.... .|-.+ .++... .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 45689999999999999876421 35679999999999999999998765332110 00000 000000 0
Q ss_pred cCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEE
Q 048831 91 KEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL-----RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRIL 163 (1051)
Q Consensus 91 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii 163 (1051)
.+++ .- +. ........++.. .+.+.+ .+++-++|+|+++.. .....++..+....++..+|
T Consensus 84 hpD~-~~--------i~--~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fI 151 (394)
T PRK07940 84 HPDV-RV--------VA--PEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWL 151 (394)
T ss_pred CCCE-EE--------ec--cccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEE
Confidence 0000 00 00 000000011111 111111 234457788999755 33455655555445677777
Q ss_pred EEeCChh-hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 164 ITTRDKQ-LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 164 iTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
++|.+.. +..... .....+.+.+++.++..+.+.... ..+ .+.+..+++.++|.|.....+
T Consensus 152 L~a~~~~~llpTIr-SRc~~i~f~~~~~~~i~~~L~~~~---~~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 152 LCAPSPEDVLPTIR-SRCRHVALRTPSVEAVAEVLVRRD---GVD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred EEECChHHChHHHH-hhCeEEECCCCCHHHHHHHHHHhc---CCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 7776643 322211 122489999999999998887432 111 245778899999999755443
No 92
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=6.5e-06 Score=93.70 Aligned_cols=201 Identities=14% Similarity=0.126 Sum_probs=109.9
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc--ccceEEEeehhhhhhcCCCHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE--FYASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
.|....+++|.+.-++.|.+++..+. -...+.++|+.|+||||+|+.++..+.-. +....|.....+.+.. -.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~----c~ 85 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE----CE 85 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC----CH
Confidence 45567889999988888988887542 23568899999999999999999876431 1000000000000000 00
Q ss_pred HHHHHHHHHh----ccCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEe
Q 048831 98 LQKQLLSNLL----KLGDISIWHVDDGINIIGSRL-----RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITT 166 (1051)
Q Consensus 98 l~~~ll~~l~----~~~~~~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT 166 (1051)
.-.++..... .-........++.. .+.+.+ .+.+-++|+|+++.. ..++.+...+....+.+.+|++|
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 0000000000 00000000011111 122222 235558899999654 45666666655445667766665
Q ss_pred CC-hhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 167 RD-KQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 167 R~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.. ..+..... .....+++.+++.++..+.+...+-.... .-..+.++.+++.++|.+--+
T Consensus 165 ~~~~kl~~tl~-sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 165 TELHKIPATIA-SRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred CChHHhHHHHH-HHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 43 33322211 11127899999999998888876633221 122367889999999987533
No 93
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.2e-05 Score=91.34 Aligned_cols=183 Identities=15% Similarity=0.170 Sum_probs=107.0
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc--------ccceEEEeehhhhhhc
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE--------FYASSFLADVRERFEK 91 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~~~~~~~~~~~ 91 (1051)
.|....+++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+++++.+... |...++-.+ . ...
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~--~-~~~ 87 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD--A-ASN 87 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec--c-ccC
Confidence 4566788999999999999998754 234689999999999999999998876431 111111110 0 000
Q ss_pred CCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh
Q 048831 92 EGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDK 169 (1051)
Q Consensus 92 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~ 169 (1051)
.+ .+...++...+.. . -..+++-++|+|+++.. ..+..+...+....+...+|++|...
T Consensus 88 ~~--~~~i~~l~~~~~~----------------~-p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~ 148 (367)
T PRK14970 88 NS--VDDIRNLIDQVRI----------------P-PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEK 148 (367)
T ss_pred CC--HHHHHHHHHHHhh----------------c-cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCc
Confidence 00 1111122221110 0 01234457999998654 33555544433333455666655332
Q ss_pred -hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchH
Q 048831 170 -QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLA 228 (1051)
Q Consensus 170 -~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 228 (1051)
.+..... ....++++.+++.++....+...+...+... ..+.++.++++++|.+-.
T Consensus 149 ~kl~~~l~-sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i--~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 149 HKIIPTIL-SRCQIFDFKRITIKDIKEHLAGIAVKEGIKF--EDDALHIIAQKADGALRD 205 (367)
T ss_pred ccCCHHHH-hcceeEecCCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHHH
Confidence 2222211 1123799999999999999988775433222 236778888889987653
No 94
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.8e-05 Score=87.82 Aligned_cols=207 Identities=16% Similarity=0.178 Sum_probs=124.4
Q ss_pred CCCCCCCccccchhHHHHHHHHhcC--CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccce-EEEeehhhhhhcCCCH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGT--GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYAS-SFLADVRERFEKEGSV 95 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~-~~~~~~~~~~~~~~~~ 95 (1051)
.+...++.+.+|+.+++++...|.. .+....-+.|+|.+|+|||+.++.+++++....... +...|+..... .
T Consensus 11 ~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t----~ 86 (366)
T COG1474 11 LEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT----P 86 (366)
T ss_pred CCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCC----H
Confidence 3455566799999999999888764 122233499999999999999999999887765544 44444444322 2
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHhhC--CCeEEEEEeCCCCHHH-----HHHHhcCCCCCCCCCEE--EEEe
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLR--QQKVLLVIDDVADVEQ-----LQSLAGKRDWFGLGSRI--LITT 166 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~--~k~~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~I--iiTT 166 (1051)
.++..+++..+.+.. .......+....+.+.+. ++.+++|||+++.... +-.|....... +++| |..+
T Consensus 87 ~~i~~~i~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~ 163 (366)
T COG1474 87 YQVLSKILNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVS 163 (366)
T ss_pred HHHHHHHHHHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEe
Confidence 566777777765222 222334445555555554 5889999999975432 22333332222 4544 3344
Q ss_pred CChhhhHhhC-----CCCcceEEcCCCChhHHHHHHHHhh---hcCCCCchHHHHHHHHHHHhcCC-CchHHHHH
Q 048831 167 RDKQLLVAHE-----VDEEHILNLDVLNDDEALQLFSMKA---FKSHQPVEEYVELSKRVLNYASG-LPLALKVL 232 (1051)
Q Consensus 167 R~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~ 232 (1051)
-+..+..... .-....+...+-+.+|-.+.+..++ |......+..-+++..++...+| --.|+..+
T Consensus 164 n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 164 NDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred ccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 4443322211 1112247788888899888888776 33344445555566666666665 23444443
No 95
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3.4e-05 Score=89.78 Aligned_cols=183 Identities=16% Similarity=0.137 Sum_probs=108.0
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc---------------------ccc
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE---------------------FYA 78 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~ 78 (1051)
.|....++||.+.-++.|..++..+. -...+.++|+.|+||||+|+.++..+--. +..
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 45667889999999999999997542 23568999999999999999999865321 111
Q ss_pred eEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCCC
Q 048831 79 SSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDWF 156 (1051)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~ 156 (1051)
...+... ...+. .+ .++++..+. ..-..++.-++|+|+|+.. .....++..+...
T Consensus 90 ~~eidaa----s~~~v-~~-iR~l~~~~~-----------------~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep 146 (509)
T PRK14958 90 LFEVDAA----SRTKV-ED-TRELLDNIP-----------------YAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP 146 (509)
T ss_pred EEEEccc----ccCCH-HH-HHHHHHHHh-----------------hccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc
Confidence 1111100 00000 11 111111111 0001245557889999764 4456666655544
Q ss_pred CCCCEEEEEeCChh-hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 157 GLGSRILITTRDKQ-LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 157 ~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.+..++|++|.+.. +..... .....+++++++.++..+.+.+.+-..+...+ .+....|++.++|.+--+
T Consensus 147 p~~~~fIlattd~~kl~~tI~-SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~--~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 147 PSHVKFILATTDHHKLPVTVL-SRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE--NAALDLLARAANGSVRDA 217 (509)
T ss_pred CCCeEEEEEECChHhchHHHH-HHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHH
Confidence 56777777665542 221111 11126899999999988877766543332222 245678889999987443
No 96
>PRK09087 hypothetical protein; Validated
Probab=98.25 E-value=2.9e-05 Score=80.73 Aligned_cols=140 Identities=13% Similarity=0.064 Sum_probs=82.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR 127 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 127 (1051)
.+.+.|||++|+|||+|+++++.... ..++.. . ....++...+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-~----------~~~~~~~~~~~-------------------- 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-N----------EIGSDAANAAA-------------------- 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-H----------HcchHHHHhhh--------------------
Confidence 36789999999999999999887532 223331 0 11111111111
Q ss_pred hCCCeEEEEEeCCCCHH-HHHHHhcCCCC-CCCCCEEEEEeCCh---------hhhHhhCCCCcceEEcCCCChhHHHHH
Q 048831 128 LRQQKVLLVIDDVADVE-QLQSLAGKRDW-FGLGSRILITTRDK---------QLLVAHEVDEEHILNLDVLNDDEALQL 196 (1051)
Q Consensus 128 l~~k~~LlVlDdv~~~~-~~~~l~~~~~~-~~~gs~IiiTTR~~---------~~~~~~~~~~~~~~~l~~L~~~ea~~L 196 (1051)
+ -+|++||++... +-+.+...+.. ...|..||+|++.. .+....... .++++++++.++-.++
T Consensus 88 --~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g--l~~~l~~pd~e~~~~i 161 (226)
T PRK09087 88 --E--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA--TVVEIGEPDDALLSQV 161 (226)
T ss_pred --c--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCC--ceeecCCCCHHHHHHH
Confidence 1 178889995421 11112221111 13467899988742 222222222 3899999999999999
Q ss_pred HHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHH
Q 048831 197 FSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKV 231 (1051)
Q Consensus 197 f~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 231 (1051)
+.+++-..... -.+++.+-|++++.|..-++..
T Consensus 162 L~~~~~~~~~~--l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 162 IFKLFADRQLY--VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHHhhhhHHHHHH
Confidence 99887443221 2236677788888777666554
No 97
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.25 E-value=1.4e-05 Score=81.31 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=61.2
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCC
Q 048831 130 QQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDK-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQ 206 (1051)
Q Consensus 130 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 206 (1051)
+.+-++|+|+++.. +..+.++..+....+.+.+|++|++. .+..... .....+++.+++.++..+.+.+.. .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~-sr~~~~~~~~~~~~~~~~~l~~~g----i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR-SRCQVLPFPPLSEEALLQWLIRQG----I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH-hhcEEeeCCCCCHHHHHHHHHHcC----C
Confidence 45668899999654 34666666665555677788777654 2222111 122489999999999999987761 1
Q ss_pred CchHHHHHHHHHHHhcCCCchH
Q 048831 207 PVEEYVELSKRVLNYASGLPLA 228 (1051)
Q Consensus 207 ~~~~~~~~~~~i~~~~~G~PLa 228 (1051)
..+.+..|++.++|.|..
T Consensus 170 ----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 ----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred ----CHHHHHHHHHHcCCCccc
Confidence 135688999999998853
No 98
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.24 E-value=5.2e-05 Score=78.52 Aligned_cols=182 Identities=16% Similarity=0.187 Sum_probs=96.6
Q ss_pred Ccc-ccchhHH--HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc-ceEEEeehhhhhhcCCCHHHHHH
Q 048831 25 KEL-VGIESRL--EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY-ASSFLADVRERFEKEGSVISLQK 100 (1051)
Q Consensus 25 ~~~-vGr~~~~--~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~ 100 (1051)
+.| +|-..+. ..+.............+.|+|..|+|||+|++++++.+....+ ..+.+... .....
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~----------~~f~~ 77 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA----------EEFIR 77 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH----------HHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH----------HHHHH
Confidence 444 4653332 2333333333334456899999999999999999998776543 23333322 22333
Q ss_pred HHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---HHHHH-HhcCCCC-CCCCCEEEEEeCChhh----
Q 048831 101 QLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV---EQLQS-LAGKRDW-FGLGSRILITTRDKQL---- 171 (1051)
Q Consensus 101 ~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~IiiTTR~~~~---- 171 (1051)
.+...+.. .....+.+.++.-. +|++||++.. ..|+. +...+.. ...|.+||+|++....
T Consensus 78 ~~~~~~~~----------~~~~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 78 EFADALRD----------GEIEEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHHHT----------TSHHHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT
T ss_pred HHHHHHHc----------ccchhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc
Confidence 34443331 12234555555433 6779999543 22222 2111111 1346789999965421
Q ss_pred -----hHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHH
Q 048831 172 -----LVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKV 231 (1051)
Q Consensus 172 -----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 231 (1051)
...... ..++++++++.++..+++.+.|...... -.+++++-|++++.+..-.|..
T Consensus 147 ~~~~L~SRl~~--Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 147 LLPDLRSRLSW--GLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp S-HHHHHHHHC--SEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred cChhhhhhHhh--cchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHH
Confidence 111112 2389999999999999999988544433 2236666677766655544443
No 99
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=3.2e-05 Score=90.72 Aligned_cols=199 Identities=20% Similarity=0.169 Sum_probs=109.6
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccc---eEEEe-ehhhhhhcCCCH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYA---SSFLA-DVRERFEKEGSV 95 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~-~~~~~~~~~~~~ 95 (1051)
.|....++||.+.-++.+..++..+. -.+.+.++|+.|+||||+|+.++..+--.... .|-.+ .+...... ..
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~-~~- 87 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSG-RF- 87 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC-CC-
Confidence 45567889999999999998887542 23567899999999999999999865321100 00000 00000000 00
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCCh
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSR----LRQQKVLLVIDDVADVE--QLQSLAGKRDWFGLGSRILITTRDK 169 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~ 169 (1051)
.+ + ...........++....+... ..+++-++|+|+++... ....++..+....+...+|++|.+.
T Consensus 88 ~d----~----~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~ 159 (527)
T PRK14969 88 VD----L----IEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (527)
T ss_pred Cc----e----eEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCCh
Confidence 00 0 000000000111111111111 13456689999997653 3556666555444566777666553
Q ss_pred h-hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch-HHHHH
Q 048831 170 Q-LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL-ALKVL 232 (1051)
Q Consensus 170 ~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 232 (1051)
. +.... ......+++++++.++..+.+.+.+-..+.. ...+..+.|++.++|.+- |+..+
T Consensus 160 ~kil~tI-~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 160 QKIPVTV-LSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred hhCchhH-HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 22110 0112378999999999998887765333222 223566788999999774 44444
No 100
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.8e-05 Score=91.96 Aligned_cols=200 Identities=14% Similarity=0.117 Sum_probs=107.4
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc--ccceEEEeehhhhhhcCCCHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE--FYASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
.|....++||.+.-++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+--. .....|...+.+.+.. -.
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~----C~ 85 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE----CE 85 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc----CH
Confidence 4566788999999999998888653 234668999999999999999999865321 1101111100000000 00
Q ss_pred HHHHHHHH----HhccCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC
Q 048831 98 LQKQLLSN----LLKLGDISIWHVDDGINIIGSR----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTR 167 (1051)
Q Consensus 98 l~~~ll~~----l~~~~~~~~~~~~~~~~~i~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 167 (1051)
....+... +..-........++....+... ..+++-++|+|+++.. ...+.|+..+..-.+.+.+|++|.
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 00000000 0000000000112222221111 1234447899998654 345566665554445566665554
Q ss_pred C-hhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch
Q 048831 168 D-KQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL 227 (1051)
Q Consensus 168 ~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 227 (1051)
+ ..+..... .....+++.+++.++....+.+.+-..+.. -..+.++.+++.++|..-
T Consensus 166 ~~~kLl~TI~-SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 166 ELHKIPATIA-SRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIARKAQGSMR 223 (620)
T ss_pred ChhhhhHHHH-hhceEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHH
Confidence 3 33322211 122389999999999988887765432221 123567889999999664
No 101
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=2.8e-06 Score=102.50 Aligned_cols=106 Identities=26% Similarity=0.379 Sum_probs=80.3
Q ss_pred eecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEecc
Q 048831 545 CLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYIT-EVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLS 623 (1051)
Q Consensus 545 ~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~ 623 (1051)
.++.|+|++|...+.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4777888888777778888888888888888888876 677778888888888888887777778778888888888888
Q ss_pred CCCCCCcCCcccCCC-CCccEEEccCCC
Q 048831 624 GCCKLENVPDTLGQV-ESLEELDISGTA 650 (1051)
Q Consensus 624 ~c~~l~~lp~~l~~l-~~L~~L~l~~~~ 650 (1051)
+|.....+|..++.+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 877777777766543 345566666654
No 102
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=3.5e-05 Score=90.45 Aligned_cols=206 Identities=17% Similarity=0.138 Sum_probs=112.4
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc--c-ceEEEe-ehhhhhhc-CCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF--Y-ASSFLA-DVRERFEK-EGS 94 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f--~-~~~~~~-~~~~~~~~-~~~ 94 (1051)
.|....++||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.++..+--.. . ..|-.+ .++..... .+.
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~ 86 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGS 86 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCC
Confidence 3556788999999999999998754 2345679999999999999999998654211 0 000000 00000000 000
Q ss_pred HHHHHHHHHHHHhccCCCccccchhhHHHHHHh-hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-hh
Q 048831 95 VISLQKQLLSNLLKLGDISIWHVDDGINIIGSR-LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRD-KQ 170 (1051)
Q Consensus 95 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~ 170 (1051)
.+ ++ .+.........+..+....+... ..+++-++|+|+++.. ...+.|+..+....+...+|++|.+ ..
T Consensus 87 -~d----vi-eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 87 -ID----VV-ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred -ce----EE-EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 00 00000000011111111111111 1244558899999644 4466666666555566676665544 33
Q ss_pred hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch-HHHHHHHH
Q 048831 171 LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL-ALKVLGSF 235 (1051)
Q Consensus 171 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~g~~ 235 (1051)
+....... ...+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+- |+..+-..
T Consensus 161 ll~TI~SR-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~--~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 161 VLPTIRSR-THHYPFRLLPPRTMRALIARICEQEGVVVD--DAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred hHHHHHHh-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33221111 238999999999999888876644332222 3566788899999774 55544443
No 103
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.22 E-value=2.1e-05 Score=89.05 Aligned_cols=172 Identities=17% Similarity=0.249 Sum_probs=96.7
Q ss_pred CCCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhc
Q 048831 23 TVKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEK 91 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 91 (1051)
...++.|++..++++.+.+.. +-...+-|.++|++|+|||++|++++++....|- .....+.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i----~v~~~~l--- 201 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI----RVVGSEL--- 201 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE----EeehHHH---
Confidence 345688999999999887632 1133567999999999999999999987654321 1111111
Q ss_pred CCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh-hCCCeEEEEEeCCCCHH------------H----HHHHhcCCC
Q 048831 92 EGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR-LRQQKVLLVIDDVADVE------------Q----LQSLAGKRD 154 (1051)
Q Consensus 92 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-l~~k~~LlVlDdv~~~~------------~----~~~l~~~~~ 154 (1051)
. .... + ........+.+. -...+.+|+|||++... . +..+.....
T Consensus 202 -------~----~~~~-g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 263 (389)
T PRK03992 202 -------V----QKFI-G------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD 263 (389)
T ss_pred -------h----Hhhc-c------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc
Confidence 1 0000 0 001111111111 13467889999997531 1 222222222
Q ss_pred CC--CCCCEEEEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCc-hHHHHHHHHHHHhcCCC
Q 048831 155 WF--GLGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPV-EEYVELSKRVLNYASGL 225 (1051)
Q Consensus 155 ~~--~~gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~ 225 (1051)
.. ..+.+||.||......... .++. .+++...+.++..++|..++.+...+. .. ...+++.+.|.
T Consensus 264 ~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~--~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 264 GFDPRGNVKIIAATNRIDILDPAILRPGRFDR--IIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred ccCCCCCEEEEEecCChhhCCHHHcCCccCce--EEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 11 1355677777654322221 2233 799999999999999998764433221 22 24455555554
No 104
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.7e-08 Score=100.73 Aligned_cols=157 Identities=22% Similarity=0.229 Sum_probs=83.7
Q ss_pred CCCEEEecCccCc--ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCC--cccCCCCCccEE
Q 048831 569 DLSELYLDGTYIT--EVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVP--DTLGQVESLEEL 644 (1051)
Q Consensus 569 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L 644 (1051)
.|++|+|+...|+ .+.-.+..+.+|+.|.|.++.....+...+..-.+|+.|+|+.|+-++... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3566666666555 333345666677777777666555555556666777777777776554322 235566777777
Q ss_pred EccCCCCcCC--Cccccc-ccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCC
Q 048831 645 DISGTATRRP--PSSIFL-MKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLR 721 (1051)
Q Consensus 645 ~l~~~~~~~~--~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~ 721 (1051)
++++|.+... .-.+.+ -++|+.|+|+||...-... .+..-...+++|..|||++|...
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s-------------------h~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS-------------------HLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh-------------------HHHHHHHhCCceeeecccccccc
Confidence 7777764321 111111 2567777777765321100 00011234566666666666433
Q ss_pred CccccccccCCCcCcEEeccCCC
Q 048831 722 EGAILSDICNLHSLKELYLSGNN 744 (1051)
Q Consensus 722 ~~~~~~~l~~l~~L~~L~L~~n~ 744 (1051)
.......+..++.|++|.++.|.
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred CchHHHHHHhcchheeeehhhhc
Confidence 33333344445555555555543
No 105
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.21 E-value=5.5e-06 Score=78.72 Aligned_cols=114 Identities=20% Similarity=0.202 Sum_probs=70.5
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccc----cceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEF----YASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINI 123 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 123 (1051)
.+++.|+|.+|+|||++++.++......+ ...+++..+.... ....+..+++..+...... .....+..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR----TPRDFAQEILEALGLPLKS-RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS----SHHHHHHHHHHHHT-SSSS-TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC----CHHHHHHHHHHHhCccccc-cCCHHHHHHH
Confidence 47899999999999999999998765432 3334444444332 2367788888887633322 2344555566
Q ss_pred HHHhhCCC-eEEEEEeCCCCH---HHHHHHhcCCCCCCCCCEEEEEeCC
Q 048831 124 IGSRLRQQ-KVLLVIDDVADV---EQLQSLAGKRDWFGLGSRILITTRD 168 (1051)
Q Consensus 124 i~~~l~~k-~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~ 168 (1051)
+.+.+... ..+||+|+++.. +.++.+..... ..+.+||+..++
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 66666654 469999999765 33455544333 566778877765
No 106
>PF14516 AAA_35: AAA-like domain
Probab=98.21 E-value=0.00028 Score=78.23 Aligned_cols=211 Identities=12% Similarity=0.130 Sum_probs=116.0
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhh-cCCCHHH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFE-KEGSVIS 97 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~ 97 (1051)
..|.+...+|+|...-+++.+.+... -..+.|.|+-.+|||+|..++.+..+.. ...+...++..... .......
T Consensus 5 ~~~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 5 PLPLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYRCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHC-CCEEEEEEeecCCCcccCCHHH
Confidence 35667778899994555555555432 2589999999999999999999887654 22333333443211 1111133
Q ss_pred HHHHHHHHHhccCCCc----------cccchhhHHHHHHhh-C--CCeEEEEEeCCCCHHH----HHHHhcCCC-CCC--
Q 048831 98 LQKQLLSNLLKLGDIS----------IWHVDDGINIIGSRL-R--QQKVLLVIDDVADVEQ----LQSLAGKRD-WFG-- 157 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~----------~~~~~~~~~~i~~~l-~--~k~~LlVlDdv~~~~~----~~~l~~~~~-~~~-- 157 (1051)
..+.+...+...-... ..........+.+.+ + .++++|+||+|+..-. .+.+.+.+. |..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 3333333332211111 111122233344432 2 5899999999975321 111111110 100
Q ss_pred -----CCCEEEEEeCCh---hhhHhhC--CCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch
Q 048831 158 -----LGSRILITTRDK---QLLVAHE--VDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL 227 (1051)
Q Consensus 158 -----~gs~IiiTTR~~---~~~~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 227 (1051)
...-.+|..+.. ....... ..-...++|.+|+.+|..+|..++... . . ....++|...++|+|.
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~---~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-S---QEQLEQLMDWTGGHPY 234 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-C---HHHHHHHHHHHCCCHH
Confidence 011112222211 1111100 111237999999999999999876422 1 1 1238899999999999
Q ss_pred HHHHHHHHhcCC
Q 048831 228 ALKVLGSFLIGR 239 (1051)
Q Consensus 228 al~~~g~~L~~~ 239 (1051)
-+..++..+...
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999998654
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=6.2e-05 Score=87.98 Aligned_cols=202 Identities=15% Similarity=0.156 Sum_probs=113.0
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQ 99 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 99 (1051)
.|....++||.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-.......--++ . -...
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg--~--------C~sC 79 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN--T--------CEQC 79 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc--c--------cHHH
Confidence 4556788999988888888888653 234678899999999999999999865321100000000 0 0000
Q ss_pred HHHHHHH----hccCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC
Q 048831 100 KQLLSNL----LKLGDISIWHVDDGINIIGSR-----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRD 168 (1051)
Q Consensus 100 ~~ll~~l----~~~~~~~~~~~~~~~~~i~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 168 (1051)
+.+.... ...........++ ++.+.+. ..+++-+||+|+++.. +....|+..+....+...+|++|.+
T Consensus 80 ~~i~~g~hpDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred HHHhcCCCCceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 0000000 0000000000111 1111111 2345668999999654 4456666655433445666666655
Q ss_pred h-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCc-hHHHHHHHHh
Q 048831 169 K-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLP-LALKVLGSFL 236 (1051)
Q Consensus 169 ~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~g~~L 236 (1051)
. .+..... .....+++.+++.++..+.+...+...... ...+.++.|++.++|.+ .|+..+...+
T Consensus 159 ~~kll~TI~-SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 159 PHKFPVTIV-SRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhhHHHH-hhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3 3332211 112378999999999999988766443321 22356788899999965 6777766544
No 108
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=3.2e-05 Score=91.69 Aligned_cols=200 Identities=16% Similarity=0.209 Sum_probs=110.1
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQ 99 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 99 (1051)
.|....+++|.+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+ ..+.......+.-.+
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~-~pC~~C~~~~~~~~D-- 88 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL-EPCQECIENVNNSLD-- 88 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC-CchhHHHHhhcCCCc--
Confidence 4566788999999999999998754 234678899999999999999999865321110000 000000000000000
Q ss_pred HHHHHHHhccCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC-Chhh
Q 048831 100 KQLLSNLLKLGDISIWHVDDGINIIGSRL-----RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTR-DKQL 171 (1051)
Q Consensus 100 ~~ll~~l~~~~~~~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR-~~~~ 171 (1051)
+...........++ ++.+.+.+ .+++-++|+|+++.. ..+..|+..+....+...+|++|. ...+
T Consensus 89 ------vieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KL 161 (725)
T PRK07133 89 ------IIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKI 161 (725)
T ss_pred ------EEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhh
Confidence 00000000000111 11222221 245568899999654 446666665554445556555554 3333
Q ss_pred hHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch-HHHHHH
Q 048831 172 LVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL-ALKVLG 233 (1051)
Q Consensus 172 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~g 233 (1051)
..... .....+++.+++.++..+.+...+-..+... ..+.++.|++.++|.+- |+..+-
T Consensus 162 l~TI~-SRcq~ieF~~L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 162 PLTIL-SRVQRFNFRRISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hHHHH-hhceeEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 32211 1123899999999999988887653332221 23557789999998764 444433
No 109
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.18 E-value=1.5e-05 Score=88.55 Aligned_cols=153 Identities=16% Similarity=0.248 Sum_probs=87.7
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQ 99 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 99 (1051)
.|....+++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....+ ..+ +... .. ...+.
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i-~~~~----~~-~~~i~ 85 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFV-NGSD----CR-IDFVR 85 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEe-ccCc----cc-HHHHH
Confidence 4566788999999999999998753 2346788899999999999999998764322 122 1111 01 11111
Q ss_pred HHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---HHHHHHhcCCCCCCCCCEEEEEeCChhhhHhhC
Q 048831 100 KQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV---EQLQSLAGKRDWFGLGSRILITTRDKQLLVAHE 176 (1051)
Q Consensus 100 ~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~ 176 (1051)
..+..... . . .+.+.+-++|+||++.. +..+.+...+.....+.++|+||.........-
T Consensus 86 ~~l~~~~~-~--------------~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l 148 (316)
T PHA02544 86 NRLTRFAS-T--------------V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPL 148 (316)
T ss_pred HHHHHHHH-h--------------h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHH
Confidence 11111100 0 0 01123457889999755 222333332333456778999887543211110
Q ss_pred CCCcceEEcCCCChhHHHHHHHH
Q 048831 177 VDEEHILNLDVLNDDEALQLFSM 199 (1051)
Q Consensus 177 ~~~~~~~~l~~L~~~ea~~Lf~~ 199 (1051)
......+.+...+.++..+++..
T Consensus 149 ~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 149 RSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HhhceEEEeCCCCHHHHHHHHHH
Confidence 11112677778888888776654
No 110
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=4.3e-05 Score=93.34 Aligned_cols=194 Identities=16% Similarity=0.141 Sum_probs=108.3
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc--c-eEEEe-ehhhhhhc-CCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY--A-SSFLA-DVRERFEK-EGS 94 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~--~-~~~~~-~~~~~~~~-~~~ 94 (1051)
.|....++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+--... . .|-.+ .++..... .+.
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~ 88 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS 88 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence 45566789999999999999987542 2356899999999999999999986632110 0 00000 00000000 000
Q ss_pred HHHHHHHHHHHHhccCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC
Q 048831 95 VISLQKQLLSNLLKLGDISIWHVDDGINIIGSR-----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTR 167 (1051)
Q Consensus 95 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 167 (1051)
.++ . .+. ......+++... +.+. ..++.-++|||+++.. ...+.|+..+......+.+|++|.
T Consensus 89 -~dv----~-eid---aas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 89 -LDV----T-EID---AASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred -CcE----E-Eec---ccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 000 0 000 000001111111 1111 2345557889999765 445666666555556677776665
Q ss_pred Ch-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch
Q 048831 168 DK-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL 227 (1051)
Q Consensus 168 ~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 227 (1051)
+. .+..... ...+.|++..++.++..+++.+..-..+... ..+....|++.++|.+.
T Consensus 159 ~~~kLl~TIr-SRc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 159 EPDKVIGTIR-SRTHHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred ChhhhhHHHH-hheeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 43 3332211 1123799999999999988887653333221 23456788999999884
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=6.7e-05 Score=88.69 Aligned_cols=197 Identities=20% Similarity=0.158 Sum_probs=112.3
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc---------ceEEEeehhhhhh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY---------ASSFLADVRERFE 90 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~---------~~~~~~~~~~~~~ 90 (1051)
.|....++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.... .+.+-..++....
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~ 97 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME 97 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc
Confidence 45667889999999999999887542 3467899999999999999999986543221 0111001110000
Q ss_pred cCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEE
Q 048831 91 KEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL-----RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRIL 163 (1051)
Q Consensus 91 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii 163 (1051)
.... .+...........++... +.+.+ .+++-++|+|+++.. ...+.|+..+....+++.+|
T Consensus 98 g~h~----------Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fI 166 (598)
T PRK09111 98 GRHV----------DVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFI 166 (598)
T ss_pred CCCC----------ceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEE
Confidence 0000 000000000011111111 11111 234457899999654 34566666555445667776
Q ss_pred EEeC-ChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHH
Q 048831 164 ITTR-DKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKV 231 (1051)
Q Consensus 164 iTTR-~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 231 (1051)
++|. ...+..... .....+++..++.++....+.+.+-...... ..+..+.|++.++|.+.-+..
T Consensus 167 l~tte~~kll~tI~-SRcq~~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 167 FATTEIRKVPVTVL-SRCQRFDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred EEeCChhhhhHHHH-hheeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 6553 333322211 1123799999999999999988764433222 236678899999998855443
No 112
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=2.4e-07 Score=96.60 Aligned_cols=63 Identities=27% Similarity=0.404 Sum_probs=32.9
Q ss_pred CCCCCCCEEeccCCCCCCccc---cccccCCCcCcEEeccCCCce-----eccccccCCCCCCEEeccCCc
Q 048831 705 SGLCSLSKLDLSDCGLREGAI---LSDICNLHSLKELYLSGNNFV-----TLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 705 ~~l~~L~~L~L~~~~l~~~~~---~~~l~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
...+.|+.+.+..|.+....+ ...+..+++|+.|+|.+|-|+ .+...+..+++|+.|++++|-
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 334556666666665533222 223445566666666666555 233344455566666666663
No 113
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=5.1e-05 Score=87.31 Aligned_cols=198 Identities=16% Similarity=0.159 Sum_probs=109.4
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc----ceEEE-eehhhhhhcCCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY----ASSFL-ADVRERFEKEGS 94 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~----~~~~~-~~~~~~~~~~~~ 94 (1051)
.|....+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+-..-. ..+-. .+++........
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 45677889999999999999887542 2367889999999999999999986533200 00000 000000000000
Q ss_pred HHHHHHHHHHHHhccCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC
Q 048831 95 VISLQKQLLSNLLKLGDISIWHVDDGINIIGSR-----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTR 167 (1051)
Q Consensus 95 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 167 (1051)
. +. .+.+.... ..++.. .+.+. ..+++-++|+|+++.. +..+.|...+....+...+|++|.
T Consensus 91 --d----~~-~i~g~~~~---gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 91 --D----VL-EIDGASHR---GIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred --c----eE-EeeccccC---CHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeC
Confidence 0 00 00000000 001111 11111 1245567899998654 345555555544445667777664
Q ss_pred Ch-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch-HHHHH
Q 048831 168 DK-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL-ALKVL 232 (1051)
Q Consensus 168 ~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 232 (1051)
.. .+..... .....+++.+++.++....+.+.+-+.+.. ...+.++.|+++++|.+- |+..+
T Consensus 160 ~~~kl~~tI~-sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 160 EIHKIPGTIL-SRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred ChHhcchHHH-HhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43 2222111 112379999999999998888766433222 223567889999999764 44443
No 114
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.13 E-value=4e-05 Score=94.37 Aligned_cols=158 Identities=15% Similarity=0.172 Sum_probs=90.1
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc------cceEEEeehhhhhhcCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF------YASSFLADVRERFEKEG 93 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~ 93 (1051)
.+...+.++||+.+++++.+.|.... ..-+.++|++|+|||++|+.++.++...- ...+|..+.........
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~ 254 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTK 254 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcc
Confidence 44455679999999999999887543 34567999999999999999999874431 22344433222111000
Q ss_pred CHHHHHHHHHHHHhccCCCccccchhhHHHHHHhh-CCCeEEEEEeCCCCH-----------HHHHHHhcCCCCCCCC-C
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL-RQQKVLLVIDDVADV-----------EQLQSLAGKRDWFGLG-S 160 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l-~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g-s 160 (1051)
. ..+.++....+.+.+ +.++.+|++|+++.. +.-+.+.+.+ ..| -
T Consensus 255 ~-------------------~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i 312 (731)
T TIGR02639 255 Y-------------------RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKL 312 (731)
T ss_pred c-------------------cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCe
Confidence 0 011122222222222 346789999998632 1122233332 233 3
Q ss_pred EEEEEeCChhhhHhhC-----CCCcceEEcCCCChhHHHHHHHHhh
Q 048831 161 RILITTRDKQLLVAHE-----VDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 161 ~IiiTTR~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
++|-+|.......... ....+.+++..++.++..+++....
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4555554322111000 0112379999999999999998654
No 115
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.13 E-value=5.9e-05 Score=86.75 Aligned_cols=168 Identities=17% Similarity=0.163 Sum_probs=96.6
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccc-cceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEF-YASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGS 126 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 126 (1051)
..-+.|+|..|+|||+|++++++.+.... ...+.+... .....++...+... ......+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~----------~~f~~~~~~~l~~~--------~~~~~~~~~ 202 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG----------DEFARKAVDILQKT--------HKEIEQFKN 202 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHHHh--------hhHHHHHHH
Confidence 35689999999999999999999765432 222222222 23334444433310 011223444
Q ss_pred hhCCCeEEEEEeCCCCHH---H-HHHHhcCCCC-CCCCCEEEEEeCChh-hhHhh------CCCCcceEEcCCCChhHHH
Q 048831 127 RLRQQKVLLVIDDVADVE---Q-LQSLAGKRDW-FGLGSRILITTRDKQ-LLVAH------EVDEEHILNLDVLNDDEAL 194 (1051)
Q Consensus 127 ~l~~k~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~~-~~~~~------~~~~~~~~~l~~L~~~ea~ 194 (1051)
.++. .-+||+||+.... . .+.+...+.. ...|..||+|+.... ..... .....-++++++++.++..
T Consensus 203 ~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 203 EICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTAT 281 (450)
T ss_pred Hhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHH
Confidence 4443 3478889995431 2 2233222211 124557888865431 11111 1122237889999999999
Q ss_pred HHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHH
Q 048831 195 QLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGS 234 (1051)
Q Consensus 195 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~ 234 (1051)
+++.+++-.......-.+++..-|++.+.|.|-.+.-+..
T Consensus 282 ~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 282 AIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9999887432211123357888999999999977665543
No 116
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.12 E-value=5.8e-05 Score=77.94 Aligned_cols=193 Identities=17% Similarity=0.195 Sum_probs=117.0
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc--cccceEEEeehhhhhhcCCC--H
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH--EFYASSFLADVRERFEKEGS--V 95 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~~~~~~--~ 95 (1051)
.|...++++|.+..+..|...+.. ........+|++|.|||+-|++++..+-. -|+.++.-.+++ +..|. .
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS---derGisvv 105 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS---DERGISVV 105 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc---ccccccch
Confidence 466778899999999999888865 45678999999999999999999875432 344333322221 12222 0
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCe-EEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhh
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQK-VLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQLL 172 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~ 172 (1051)
..-.+.+ +++...... .... ..++ -.||||+++.. +.|.++..........+|.|+.+..-...
T Consensus 106 r~Kik~f-akl~~~~~~-----------~~~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 106 REKIKNF-AKLTVLLKR-----------SDGY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRI 172 (346)
T ss_pred hhhhcCH-HHHhhcccc-----------ccCC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhC
Confidence 0000111 111000000 0000 0122 47899999876 45888888877777788876665553322
Q ss_pred HhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCc-hHHHHH
Q 048831 173 VAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLP-LALKVL 232 (1051)
Q Consensus 173 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~ 232 (1051)
...-...-.-+..++|.+++...-+...+-+.+.+.+ .+..+.|+++++|-- -|+.++
T Consensus 173 i~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 173 IRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred ChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 1111111125889999999999888888855554433 367889999999854 344433
No 117
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1e-07 Score=96.62 Aligned_cols=178 Identities=25% Similarity=0.281 Sum_probs=100.9
Q ss_pred CeeEEEcCccCccc--ccccccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecC
Q 048831 442 KIVEFQMCYSHIEE--LWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLK 519 (1051)
Q Consensus 442 ~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~ 519 (1051)
.|++||++++.++. +..-++.+.+|+.|.+.+. .--..+...+.+-.+|+.|+++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-----------------------~LdD~I~~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-----------------------RLDDPIVNTIAKNSNLVRLNLS 242 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-----------------------ccCcHHHHHHhccccceeeccc
Confidence 46777777766652 2223445555555555443 3333344444445555555555
Q ss_pred CCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCch-hhCC-CCCCCEEEecCccCc----ccCccccCCCCC
Q 048831 520 GCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPA-IVAS-MEDLSELYLDGTYIT----EVPSSIELLTGL 593 (1051)
Q Consensus 520 ~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~-~~~~-l~~L~~L~L~~~~i~----~lp~~i~~l~~L 593 (1051)
.|..++... +...+.+++.|..|+|++|......-. .+.. -++|+.|+|+|+.-. .+..-...+++|
T Consensus 243 m~sG~t~n~-------~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l 315 (419)
T KOG2120|consen 243 MCSGFTENA-------LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNL 315 (419)
T ss_pred cccccchhH-------HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCce
Confidence 554444321 112345577888888888876554321 1111 246788888876322 233334678889
Q ss_pred CEEecCCCCCCCc-ccccccCCCCCCEEeccCCCCCC-cCCcccCCCCCccEEEccCC
Q 048831 594 ELLNLNDCKNLVR-LPNSINGLKSLKTLNLSGCCKLE-NVPDTLGQVESLEELDISGT 649 (1051)
Q Consensus 594 ~~L~L~~~~~l~~-lp~~i~~L~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~ 649 (1051)
.+|||++|..+.. .-..+.+++.|++|.++.|..+. ...-.+...++|.+|++.++
T Consensus 316 ~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 316 VHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 9999988765543 23346678888888888886442 11123556667777776654
No 118
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=8.3e-06 Score=89.74 Aligned_cols=135 Identities=30% Similarity=0.542 Sum_probs=85.5
Q ss_pred CCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCch
Q 048831 483 FIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPA 562 (1051)
Q Consensus 483 ~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~ 562 (1051)
+..+.+++.|++++| .+..+| .-..+|+.|.+++|..++.+|.. + .++|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~---------L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGS---------I--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCch---------h--hhhhhheEccCccccccccc
Confidence 334688999999988 777777 23346999999998888776641 1 35788999999877777764
Q ss_pred hhCCCCCCCEEEecCccC---cccCccccCCCCCCEEecCCCCCC--CcccccccCC-CCCCEEeccCCCCCCcCCcccC
Q 048831 563 IVASMEDLSELYLDGTYI---TEVPSSIELLTGLELLNLNDCKNL--VRLPNSINGL-KSLKTLNLSGCCKLENVPDTLG 636 (1051)
Q Consensus 563 ~~~~l~~L~~L~L~~~~i---~~lp~~i~~l~~L~~L~L~~~~~l--~~lp~~i~~L-~~L~~L~L~~c~~l~~lp~~l~ 636 (1051)
+|+.|++.++.. ..+|. +|+.|.+.++... ..+|. .+ ++|++|.+++|..+. +|..+.
T Consensus 113 ------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~LP 176 (426)
T PRK15386 113 ------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKLP 176 (426)
T ss_pred ------ccceEEeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCccc-Cccccc
Confidence 467777776554 34444 3556666433211 11111 12 578888888877543 333222
Q ss_pred CCCCccEEEccCCC
Q 048831 637 QVESLEELDISGTA 650 (1051)
Q Consensus 637 ~l~~L~~L~l~~~~ 650 (1051)
.+|+.|.++.+.
T Consensus 177 --~SLk~L~ls~n~ 188 (426)
T PRK15386 177 --ESLQSITLHIEQ 188 (426)
T ss_pred --ccCcEEEecccc
Confidence 467777776653
No 119
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=9.6e-05 Score=88.38 Aligned_cols=199 Identities=16% Similarity=0.122 Sum_probs=112.1
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQ 99 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 99 (1051)
.|....++||.+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+.......-. . ..+. ....
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~-~-------~c~~-c~~c 80 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG-R-------PCGT-CEMC 80 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-C-------CCcc-CHHH
Confidence 45567889999999999988887542 34667899999999999999999876421110000 0 0000 0111
Q ss_pred HHHHHHHhc----cCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC
Q 048831 100 KQLLSNLLK----LGDISIWHVDDGINIIGSRL-----RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRD 168 (1051)
Q Consensus 100 ~~ll~~l~~----~~~~~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 168 (1051)
+.+...... .........++.. .+.+.+ .+++-++|+|+++.. +..+.|+..+....+...+|++|.+
T Consensus 81 ~~i~~~~~~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred HHHhcCCCCeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111110000 0000001111111 122221 235568999999644 4466666655444456677766654
Q ss_pred h-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 169 K-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 169 ~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
. .+..... .....+++..++.++....+.+.+...+... ..+.+..|++.++|.+..+...
T Consensus 160 ~~kll~tI~-SR~~~i~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 160 VHKVPATIL-SRCQRFDFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhhhhHHHH-hccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 3 2222111 1123789999999999988887765433222 2356788999999988655443
No 120
>PLN03150 hypothetical protein; Provisional
Probab=98.08 E-value=6e-06 Score=99.62 Aligned_cols=106 Identities=26% Similarity=0.374 Sum_probs=91.3
Q ss_pred CCCEEEecCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEcc
Q 048831 569 DLSELYLDGTYIT-EVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 647 (1051)
Q Consensus 569 ~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~ 647 (1051)
.++.|+|+++.+. .+|..++.+++|+.|+|++|...+.+|..++.+++|+.|+|++|.....+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778999999987 678889999999999999998888999999999999999999999888999999999999999999
Q ss_pred CCCCc-CCCcccccc-cCCcEEEccCCCC
Q 048831 648 GTATR-RPPSSIFLM-KNLKTLSFSGCNG 674 (1051)
Q Consensus 648 ~~~~~-~~~~~l~~l-~~L~~L~l~~~~~ 674 (1051)
+|.+. .+|..+..+ .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 99866 567777653 4667788777653
No 121
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=1.1e-06 Score=89.26 Aligned_cols=229 Identities=20% Similarity=0.172 Sum_probs=137.7
Q ss_pred CceecEEeeeCCCCC--CcCchhhCCCCCCCEEEecCccCc---ccCccccCCCCCCEEecCCCCCCCcccccccCCCCC
Q 048831 543 LKCLRTLKLSGCSKL--KKFPAIVASMEDLSELYLDGTYIT---EVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSL 617 (1051)
Q Consensus 543 l~~L~~L~Ls~c~~~--~~~p~~~~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L 617 (1051)
+.-++.|.+.+|..- +.+-..-...+.++.|+|.+|.|. ++-..+.++|.|+.|+|+.|.....+-..-..+.+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 444556666666432 223333345678888899998887 444556788889999988776433221111345678
Q ss_pred CEEeccCCCCC-CcCCcccCCCCCccEEEccCCCCcCC---Cccccc-ccCCcEEEccCCCCCCCCCcccCCcccccccc
Q 048831 618 KTLNLSGCCKL-ENVPDTLGQVESLEELDISGTATRRP---PSSIFL-MKNLKTLSFSGCNGPPSTASCHLNLPFNLMRK 692 (1051)
Q Consensus 618 ~~L~L~~c~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~---~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 692 (1051)
++|-|.|...- ......+..+|.+++|.++.|....+ ...+.. -+.+++|+..+|.......
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~------------- 190 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLN------------- 190 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHH-------------
Confidence 88888775432 22334456677778887777753322 111111 1244445544443211100
Q ss_pred CCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccc--cccCCCCCCEEeccCCcccc
Q 048831 693 SSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPA--SISGLFNLKYLELEDCKRLQ 770 (1051)
Q Consensus 693 ~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~l~~c~~L~ 770 (1051)
-+ .--.-+|++..+-+..|.+.+.........++.+-.|+|+.|++.++.+ .+..|+.|..|.++++|...
T Consensus 191 -~~------~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 191 -KN------KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred -HH------hHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 00 0012367788888888877655555566778889999999999887654 67889999999999999777
Q ss_pred ccCCCCCCCceEeecCCcccccc
Q 048831 771 SLPQLPPNVIKVSVNGCASLLTL 793 (1051)
Q Consensus 771 ~lp~lp~~L~~L~i~~C~~L~~~ 793 (1051)
.+.. .--+.|-|...+.++.+
T Consensus 264 ~l~~--~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 264 PLRG--GERRFLLIARLTKVQVL 284 (418)
T ss_pred cccC--CcceEEEEeeccceEEe
Confidence 6654 12233444444554433
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=6.5e-05 Score=86.83 Aligned_cols=199 Identities=17% Similarity=0.155 Sum_probs=112.3
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc-ccc--eEEEe-ehhhhhhcCCCH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE-FYA--SSFLA-DVRERFEKEGSV 95 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~--~~~~~-~~~~~~~~~~~~ 95 (1051)
.|....++||.+.-.+.|...+..+ .-.+++.++|+.|+||||+|+.++..+-.. ... .+..+ .++........
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~- 86 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHI- 86 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCC-
Confidence 4566788999998889999988654 234577999999999999999999865321 100 01110 00000000000
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSR----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDK 169 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~ 169 (1051)
.+...........++....+... ..+++-++|+|+++.. +....|+..+....+.+++|++|.+.
T Consensus 87 ---------dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 87 ---------DIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred ---------eEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECCh
Confidence 00000000000011122222110 1135568899999654 44566666555445677877777664
Q ss_pred h-hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 170 Q-LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 170 ~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
. +..... .....+++.+++.++..+.+.+.+-..+... ..+.++.|++.++|.+--+..+
T Consensus 158 ~kL~~tI~-SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 158 LKLPATIL-SRTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hhCchHHH-hhceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHH
Confidence 2 111111 1123899999999999999887664333222 2366788999999988444333
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.0002 Score=83.06 Aligned_cols=196 Identities=14% Similarity=0.093 Sum_probs=108.9
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc---c-cceEEEeehhhhhh--cCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE---F-YASSFLADVRERFE--KEG 93 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~---f-~~~~~~~~~~~~~~--~~~ 93 (1051)
.|....+++|.+.-++.+...+..+. -.+.+.++|+.|+||||+|+.++..+... . +.+-...++..... ..+
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 45566789999999999999997642 34567899999999999999999865321 0 00000000000000 000
Q ss_pred CHHHHHHHHHHHHhccCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEe
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR-----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITT 166 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT 166 (1051)
+ . .+. .......++ .+.+.+. ..+++-++|+|+++.. ...+.+...+....+...+|++|
T Consensus 90 ~-~--------eid---aas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~t 156 (486)
T PRK14953 90 L-I--------EID---AASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCT 156 (486)
T ss_pred E-E--------EEe---CccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 0 0 000 000000111 1122222 1345668999999654 34556655555444556666655
Q ss_pred CC-hhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 167 RD-KQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 167 R~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
.+ ..+..... .....+.+.+++.++....+...+-..+... ..+.+..|++.++|.+..+..+
T Consensus 157 t~~~kl~~tI~-SRc~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 157 TEYDKIPPTIL-SRCQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CCHHHHHHHHH-HhceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 43 33322111 1113799999999999988887764333222 2356678888999977544333
No 124
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.03 E-value=4.3e-05 Score=86.57 Aligned_cols=160 Identities=16% Similarity=0.236 Sum_probs=91.3
Q ss_pred CCCCCCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRER 88 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 88 (1051)
++....++.|.+..+++|.+.+.. +-...+-|.|+|++|+|||++|+++++.....|-. +. ..+
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~---V~-~se- 252 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR---VV-GSE- 252 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE---Ee-cch-
Confidence 334456788999999999887642 11234678899999999999999999987655421 11 111
Q ss_pred hhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHHhcC
Q 048831 89 FEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE----------------QLQSLAGK 152 (1051)
Q Consensus 89 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~ 152 (1051)
+..... . . ........+.....+.+.+|+||+++... .+..++..
T Consensus 253 ---------L~~k~~---G--e-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~ 313 (438)
T PTZ00361 253 ---------LIQKYL---G--D-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQ 313 (438)
T ss_pred ---------hhhhhc---c--h-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHH
Confidence 000000 0 0 00001111222223567888899875321 01122222
Q ss_pred CCCC--CCCCEEEEEeCChhhhHhhCCC---CcceEEcCCCChhHHHHHHHHhhhc
Q 048831 153 RDWF--GLGSRILITTRDKQLLVAHEVD---EEHILNLDVLNDDEALQLFSMKAFK 203 (1051)
Q Consensus 153 ~~~~--~~gs~IiiTTR~~~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a~~ 203 (1051)
+..+ ..+.+||+||.........-.. -...+++...+.++..++|..++.+
T Consensus 314 Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 314 LDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred HhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 2111 2356788888765444332111 1237999999999999999987643
No 125
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00019 Score=84.57 Aligned_cols=196 Identities=14% Similarity=0.090 Sum_probs=111.5
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccc---eEE-EeehhhhhhcCCCH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYA---SSF-LADVRERFEKEGSV 95 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~-~~~~~~~~~~~~~~ 95 (1051)
.|....++||.+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-.. .|- ..+++........
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~- 88 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSL- 88 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCC-
Confidence 4667788999999999999999764 234678999999999999999999865321000 000 0011110000000
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHH---HHh-hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINII---GSR-LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDK 169 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i---~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~ 169 (1051)
.+ . .+. .......++....+ ... ..+++-++|+|+++.. ..++.|+..+....+...+|++|.+.
T Consensus 89 -dv----~-~id---gas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 89 -DV----I-EID---GASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred -Ce----E-Eec---CcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCCh
Confidence 00 0 000 00000111111111 110 1345557889999654 44667777666545566666666543
Q ss_pred -hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 170 -QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 170 -~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.+..... .....+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.+-.+
T Consensus 160 ~kL~~tI~-SRc~~~~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 160 HKLPATIK-SRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHhHHHHH-HhceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 3322211 1123689999999999988887765443322 2366778889999987443
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00019 Score=85.55 Aligned_cols=200 Identities=19% Similarity=0.126 Sum_probs=109.6
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQ 99 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 99 (1051)
.|.....++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+-.......-...+ +. -...
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C-------g~-C~~C 81 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC-------GK-CELC 81 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC-------cc-cHHH
Confidence 34566789999999999999887642 235788999999999999999998654321000000000 00 0011
Q ss_pred HHHHHHHh----ccCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC
Q 048831 100 KQLLSNLL----KLGDISIWHVDDGINIIGSRL-----RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRD 168 (1051)
Q Consensus 100 ~~ll~~l~----~~~~~~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 168 (1051)
+.+..... ..........+...+.+ +.+ .+++-++|+|+++.. +....|+..+..-.....+|++|.+
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 11110000 00000000111111111 111 234558899999754 4466666655543445556655554
Q ss_pred hh-hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 169 KQ-LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 169 ~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
.. +..... .....+++..++.++....+.+.+....... ..+.+..|++.++|.+..+..+
T Consensus 161 ~~~llpTIr-SRc~~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 161 PQRVLPTII-SRCQRFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhhhHHHH-hheeEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 32 222111 1123788999999998888877664332221 1255788999999988554433
No 127
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.00 E-value=6.4e-05 Score=80.64 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=81.0
Q ss_pred CccccchhHHHHHHHHhcC-------------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc--cceEEEeehhhhh
Q 048831 25 KELVGIESRLEKLRFLMGT-------------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF--YASSFLADVRERF 89 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~-------------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~ 89 (1051)
..++|.+...++|.++... ..+....+.++|++|+||||+|+.+++.+...- ....++. +..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~-- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER-- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH--
Confidence 3578887776666533211 113456788999999999999999998653211 1111221 111
Q ss_pred hcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCC----------HHHHHHHhcCCCCCCCC
Q 048831 90 EKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVAD----------VEQLQSLAGKRDWFGLG 159 (1051)
Q Consensus 90 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~----------~~~~~~l~~~~~~~~~g 159 (1051)
.+ +....... ........+.+ .. .-+|++|+++. .+.++.+..........
T Consensus 83 ------~~----l~~~~~g~------~~~~~~~~~~~-a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~ 143 (261)
T TIGR02881 83 ------AD----LVGEYIGH------TAQKTREVIKK-AL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE 143 (261)
T ss_pred ------HH----hhhhhccc------hHHHHHHHHHh-cc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC
Confidence 01 11110000 00111112221 11 23788999964 23455565554433333
Q ss_pred CEEEEEeCChhhhH--------hhCCCCcceEEcCCCChhHHHHHHHHhhhc
Q 048831 160 SRILITTRDKQLLV--------AHEVDEEHILNLDVLNDDEALQLFSMKAFK 203 (1051)
Q Consensus 160 s~IiiTTR~~~~~~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 203 (1051)
..+|+++....... ...+. ..+.+++++.+|..+++.+.+..
T Consensus 144 ~~vila~~~~~~~~~~~~~p~L~sRf~--~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 144 FVLILAGYSDEMDYFLSLNPGLRSRFP--ISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EEEEecCCcchhHHHHhcChHHHhccc--eEEEECCCCHHHHHHHHHHHHHH
Confidence 35555554332211 01122 36899999999999999877643
No 128
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.99 E-value=0.00011 Score=91.06 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=89.6
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc------ceEEEeehhhhhhcCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY------ASSFLADVRERFEKEG 93 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~------~~~~~~~~~~~~~~~~ 93 (1051)
.+...+.+|||+.+++++...|.... ..-+.++|.+|+||||+|+.++.++....- ..+|..+.........
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~ 259 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGAS 259 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccc
Confidence 45566789999999999999887643 235679999999999999999998754321 2233222221110000
Q ss_pred CHHHHHHHHHHHHhccCCCccccchh-hHHHHHHhh-CCCeEEEEEeCCCCHH-------H--HH-HHhcCCCCCCCCCE
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDD-GINIIGSRL-RQQKVLLVIDDVADVE-------Q--LQ-SLAGKRDWFGLGSR 161 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~-~~~~i~~~l-~~k~~LlVlDdv~~~~-------~--~~-~l~~~~~~~~~gs~ 161 (1051)
. . ...+. ....+.+.- .+++++|++|++.... + .. .+.+.+. ...-+
T Consensus 260 ~----~---------------ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~ 318 (852)
T TIGR03345 260 V----K---------------GEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELR 318 (852)
T ss_pred c----c---------------hHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeE
Confidence 0 0 01111 111222221 2468999999985431 1 11 2333322 12346
Q ss_pred EEEEeCChhhhHhhC-----CCCcceEEcCCCChhHHHHHHHHhh
Q 048831 162 ILITTRDKQLLVAHE-----VDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 162 IiiTTR~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
+|-||.......... ....+++.|.+++.+++.+++....
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 666666532211111 1122389999999999999975443
No 129
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.99 E-value=9.7e-05 Score=88.42 Aligned_cols=209 Identities=17% Similarity=0.121 Sum_probs=108.7
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc--cc---cceEEE-eehhhhhhcCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH--EF---YASSFL-ADVRERFEKEG 93 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~--~f---~~~~~~-~~~~~~~~~~~ 93 (1051)
.|...+.++|++..++.+.+.+... ....+.|+|++|+||||+|+.+++..+. .+ ...-|+ .+.... . ..
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l-~-~d 224 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL-R-WD 224 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc-c-CC
Confidence 3566678999999999887777532 3457999999999999999999875532 11 111222 111110 0 00
Q ss_pred CHHHHHHHH---------------HHHHhcc-----------CCC----cc-ccchhhHHHHHHhhCCCeEEEEEeCCCC
Q 048831 94 SVISLQKQL---------------LSNLLKL-----------GDI----SI-WHVDDGINIIGSRLRQQKVLLVIDDVAD 142 (1051)
Q Consensus 94 ~~~~l~~~l---------------l~~l~~~-----------~~~----~~-~~~~~~~~~i~~~l~~k~~LlVlDdv~~ 142 (1051)
. ..+...+ +...... ... .. .-.......+.+.++.+++.++-|+.|.
T Consensus 225 ~-~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~ 303 (615)
T TIGR02903 225 P-REVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDP 303 (615)
T ss_pred H-HHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceecc
Confidence 0 1111111 1110000 000 00 0011234555666666777777665543
Q ss_pred H--HHHHHHhcCCCCCCCCCEEEE--EeCChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHH
Q 048831 143 V--EQLQSLAGKRDWFGLGSRILI--TTRDKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRV 218 (1051)
Q Consensus 143 ~--~~~~~l~~~~~~~~~gs~Iii--TTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i 218 (1051)
. ..|+.+...+....+...|+| ||++.......-......+.+.+++.+|.++++.+.+-...... ..++.+.|
T Consensus 304 ~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l--s~eal~~L 381 (615)
T TIGR02903 304 DDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL--AAGVEELI 381 (615)
T ss_pred CCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHH
Confidence 2 224444444333334444554 56654321111011122678999999999999998764322111 13455566
Q ss_pred HHhcCCCchHHHHHHHH
Q 048831 219 LNYASGLPLALKVLGSF 235 (1051)
Q Consensus 219 ~~~~~G~PLal~~~g~~ 235 (1051)
.+++..-+-|+..++..
T Consensus 382 ~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 382 ARYTIEGRKAVNILADV 398 (615)
T ss_pred HHCCCcHHHHHHHHHHH
Confidence 66665546666655544
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.99 E-value=0.00022 Score=82.02 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=90.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcccc-ceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFY-ASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGS 126 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 126 (1051)
..-+.|+|.+|+|||+||+++++.+...++ ..+.+... .+...++...+... ....+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~----------~~f~~~~~~~~~~~----------~~~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLNDLVDSMKEG----------KLNEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHhcc----------cHHHHHH
Confidence 446999999999999999999998776543 23333322 22233343333211 1122333
Q ss_pred hhCCCeEEEEEeCCCCH---HHH-HHHhcCCCC-CCCCCEEEEEeC-ChhhhHhh------CCCCcceEEcCCCChhHHH
Q 048831 127 RLRQQKVLLVIDDVADV---EQL-QSLAGKRDW-FGLGSRILITTR-DKQLLVAH------EVDEEHILNLDVLNDDEAL 194 (1051)
Q Consensus 127 ~l~~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR-~~~~~~~~------~~~~~~~~~l~~L~~~ea~ 194 (1051)
.++.+.-+|++||++.. ... +.+...+.. ...|..||+||. ++.-.... ......++++++.+.++-.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 33334558899999643 111 122111111 123557888874 33221111 1122237899999999999
Q ss_pred HHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHH
Q 048831 195 QLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALK 230 (1051)
Q Consensus 195 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 230 (1051)
+++.+.+....... .+++...|+++..|.--.+.
T Consensus 270 ~IL~~~~~~~~~~l--~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 270 KIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHhcCCCC--CHHHHHHHHhccccCHHHHH
Confidence 99988874332222 23667788888877654433
No 131
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=0.00041 Score=75.88 Aligned_cols=218 Identities=17% Similarity=0.165 Sum_probs=124.5
Q ss_pred HHHHHHhhccCCCCCCCccccchhHHHHHHHHhcC--CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccc-e-EEEee
Q 048831 9 IVNVISSKIHTEPKTVKELVGIESRLEKLRFLMGT--GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYA-S-SFLAD 84 (1051)
Q Consensus 9 i~~~i~~~l~~~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~-~-~~~~~ 84 (1051)
+.+.....+. ....+..++||+.|+..+.+++.. +.+..+.+-|.|-+|.|||.+...++.+....... . +++.
T Consensus 135 ~~~~~~~~l~-~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in- 212 (529)
T KOG2227|consen 135 ISEQRSESLL-NTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN- 212 (529)
T ss_pred HHHHHHHHHH-hcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe-
Confidence 4444444444 222455699999999999999864 34556789999999999999999999887766554 2 3332
Q ss_pred hhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCC--CeEEEEEeCCCCHHH--HHHHhcCCCCC-CCC
Q 048831 85 VRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQ--QKVLLVIDDVADVEQ--LQSLAGKRDWF-GLG 159 (1051)
Q Consensus 85 ~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~--k~~LlVlDdv~~~~~--~~~l~~~~~~~-~~g 159 (1051)
+... .....+...+.+.+.+........ .+....+.+...+ ..+|+|+|.+|.... -..+...+.|- -++
T Consensus 213 c~sl----~~~~aiF~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~ 287 (529)
T KOG2227|consen 213 CTSL----TEASAIFKKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPN 287 (529)
T ss_pred eccc----cchHHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCc
Confidence 2211 112566777777764333222211 3445555555554 368999999876532 12233333332 256
Q ss_pred CEEEEEeCCh------hhhHhhC---CCCcceEEcCCCChhHHHHHHHHhhhcCCCC---chHHHHHHHHHHHhcCCCch
Q 048831 160 SRILITTRDK------QLLVAHE---VDEEHILNLDVLNDDEALQLFSMKAFKSHQP---VEEYVELSKRVLNYASGLPL 227 (1051)
Q Consensus 160 s~IiiTTR~~------~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~---~~~~~~~~~~i~~~~~G~PL 227 (1051)
+|+|+.---. ..+.... .-....+..++-+.++..+++..+.-..... ....+-.|++++.-.|.+--
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRk 367 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRK 367 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHH
Confidence 6665432111 1111111 1123478899999999999999886322211 12333344444444444555
Q ss_pred HHHHHH
Q 048831 228 ALKVLG 233 (1051)
Q Consensus 228 al~~~g 233 (1051)
|+.+.-
T Consensus 368 aLdv~R 373 (529)
T KOG2227|consen 368 ALDVCR 373 (529)
T ss_pred HHHHHH
Confidence 554443
No 132
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.97 E-value=1e-06 Score=101.59 Aligned_cols=108 Identities=24% Similarity=0.269 Sum_probs=57.3
Q ss_pred hCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccE
Q 048831 564 VASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEE 643 (1051)
Q Consensus 564 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~ 643 (1051)
+..+.+|..|++.+|.|..+...+..+++|++|++++|.....- .+..++.|+.|++++|.... + ..+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-I-SGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh-c-cCCccchhhhc
Confidence 44455555555555555555444555566666666654432221 23445556666666654322 1 22334566666
Q ss_pred EEccCCCCcCCCcc-cccccCCcEEEccCCCCC
Q 048831 644 LDISGTATRRPPSS-IFLMKNLKTLSFSGCNGP 675 (1051)
Q Consensus 644 L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~ 675 (1051)
+++++|.+..+... +..+.+|+.+.+.+|...
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 66666666555443 455666666666665543
No 133
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00031 Score=83.11 Aligned_cols=194 Identities=15% Similarity=0.144 Sum_probs=108.0
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc-ceEEEeehhhhhhcCCCHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY-ASSFLADVRERFEKEGSVISL 98 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l 98 (1051)
.|....+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+-..-. ... .+.. ...
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~---pC~~--------C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE---PCNE--------CEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCc--------cHH
Confidence 46677899999999999999987642 3467889999999999999999876532110 000 0000 000
Q ss_pred HHHHHHHH----hccCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC
Q 048831 99 QKQLLSNL----LKLGDISIWHVDDGINIIGSR-----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTR 167 (1051)
Q Consensus 99 ~~~ll~~l----~~~~~~~~~~~~~~~~~i~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 167 (1051)
...+.... ..-........++ +..+.+. ..+++-++|+|+++.. .....|+..+....+...+|++|.
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt 157 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATT 157 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 00110000 0000000000111 1112221 1345668899999754 446666665544344555565554
Q ss_pred Ch-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 168 DK-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 168 ~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.. .+..... .....+++.+++.++..+.+...+-..+...+ .+.+..|++.++|.+..+
T Consensus 158 ~~~ki~~tI~-SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 158 EPHKIPATIL-SRCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMRDA 217 (559)
T ss_pred ChhhCcHHHH-hHheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 33 3222111 11237899999999999888877644332222 356778888888877543
No 134
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.95 E-value=0.0002 Score=80.73 Aligned_cols=177 Identities=16% Similarity=0.214 Sum_probs=97.8
Q ss_pred CCCCCCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRER 88 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 88 (1051)
+.....++.|.+...++|.+.+.. +-...+-|.++|++|+|||++|+++++.....|- .+. ...
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-~s~- 214 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-GSE- 214 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hHH-
Confidence 334446789999999888776531 1134578999999999999999999987654431 111 111
Q ss_pred hhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH------------H----HHHHhcC
Q 048831 89 FEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE------------Q----LQSLAGK 152 (1051)
Q Consensus 89 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~ 152 (1051)
+..... . . ........+.......+.+|+||+++... . +..++..
T Consensus 215 ---------l~~k~~---g-e------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ 275 (398)
T PTZ00454 215 ---------FVQKYL---G-E------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQ 275 (398)
T ss_pred ---------HHHHhc---c-h------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHH
Confidence 111000 0 0 00011112222234578899999986420 1 2223222
Q ss_pred CCCC--CCCCEEEEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCC-chHHHHHHHHHHHhcCC
Q 048831 153 RDWF--GLGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQP-VEEYVELSKRVLNYASG 224 (1051)
Q Consensus 153 ~~~~--~~gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G 224 (1051)
+... ..+..||+||......... ..+. .+++...+.++..++|..+..+.... .-+ ..++++.+.|
T Consensus 276 ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~--~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g 349 (398)
T PTZ00454 276 MDGFDQTTNVKVIMATNRADTLDPALLRPGRLDR--KIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEK 349 (398)
T ss_pred hhccCCCCCEEEEEecCCchhCCHHHcCCCcccE--EEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCC
Confidence 2211 2355678888765433221 2233 78999999999888888665332211 112 3355566666
Q ss_pred Cc
Q 048831 225 LP 226 (1051)
Q Consensus 225 ~P 226 (1051)
.-
T Consensus 350 ~s 351 (398)
T PTZ00454 350 IS 351 (398)
T ss_pred CC
Confidence 43
No 135
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.94 E-value=0.00028 Score=82.13 Aligned_cols=181 Identities=15% Similarity=0.150 Sum_probs=99.1
Q ss_pred cccchhH--HHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccc-eEEEeehhhhhhcCCCHHHHHHHHH
Q 048831 27 LVGIESR--LEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYA-SSFLADVRERFEKEGSVISLQKQLL 103 (1051)
Q Consensus 27 ~vGr~~~--~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll 103 (1051)
.+|...+ +..+.++..........+.|+|..|+|||+||+++++.+..++.. .+.+.... ....++.
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~----------~~~~~~~ 194 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE----------KFTNDFV 194 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH----------HHHHHHH
Confidence 3465443 223334333222234568999999999999999999988776533 23232222 2223333
Q ss_pred HHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---H-HHHHHhcCCCC-CCCCCEEEEEeCChh-hhH----
Q 048831 104 SNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV---E-QLQSLAGKRDW-FGLGSRILITTRDKQ-LLV---- 173 (1051)
Q Consensus 104 ~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~---~-~~~~l~~~~~~-~~~gs~IiiTTR~~~-~~~---- 173 (1051)
..+... ....+.+.++. .-+|||||++.. + ..+.+...+.. ...|..||||+.... ...
T Consensus 195 ~~~~~~----------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~ 263 (450)
T PRK00149 195 NALRNN----------TMEEFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEE 263 (450)
T ss_pred HHHHcC----------cHHHHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHH
Confidence 333210 11233344443 347889999542 1 11222221111 123556788776532 111
Q ss_pred h--hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHH
Q 048831 174 A--HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALK 230 (1051)
Q Consensus 174 ~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 230 (1051)
. .......++++++.+.++..+++.+.+-.... .-.+++.+.|++++.|..-.+.
T Consensus 264 ~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 264 RLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI--DLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHcCcCCCHHHHH
Confidence 0 11222237999999999999999988754322 2223677888888888765443
No 136
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.93 E-value=0.00063 Score=69.40 Aligned_cols=56 Identities=23% Similarity=0.400 Sum_probs=42.6
Q ss_pred CCCCCccccchhHHHHHHHHhcC--CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 21 PKTVKELVGIESRLEKLRFLMGT--GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 21 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
+...+.++|.+.+.++|.+-... .+....-|.+||..|+|||++++++.+.+..+-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 44557899999999988654321 123356788999999999999999999877643
No 137
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.93 E-value=0.00016 Score=90.32 Aligned_cols=170 Identities=14% Similarity=0.144 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhccCCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc-----c-cce
Q 048831 6 IEEIVNVISSKIHTEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE-----F-YAS 79 (1051)
Q Consensus 6 i~~i~~~i~~~l~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----f-~~~ 79 (1051)
+++...++..+.. ......++||+.+++++.+.|.... ..-+.++|++|+|||++|+.++.++... . ...
T Consensus 162 l~~~~~~l~~~a~--~~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~ 237 (821)
T CHL00095 162 LEEFGTNLTKEAI--DGNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKL 237 (821)
T ss_pred HHHHHHHHHHHHH--cCCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCe
Confidence 4444444443322 2224568999999999999997643 2356799999999999999999876532 1 123
Q ss_pred EEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHH-HHHHhhCCCeEEEEEeCCCCHH---------HHHHH
Q 048831 80 SFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGIN-IIGSRLRQQKVLLVIDDVADVE---------QLQSL 149 (1051)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~-~i~~~l~~k~~LlVlDdv~~~~---------~~~~l 149 (1051)
+|..+........ .. ..+.++... .+.+.-+.++++|++|++...- +...+
T Consensus 238 i~~l~~~~l~ag~------------------~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~l 298 (821)
T CHL00095 238 VITLDIGLLLAGT------------------KY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANI 298 (821)
T ss_pred EEEeeHHHHhccC------------------CC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHH
Confidence 4443322211100 00 011122222 2222223468899999984321 12222
Q ss_pred hc-CCCCCCCCCEEEEEeCChhhhHhhC-----CCCcceEEcCCCChhHHHHHHHHh
Q 048831 150 AG-KRDWFGLGSRILITTRDKQLLVAHE-----VDEEHILNLDVLNDDEALQLFSMK 200 (1051)
Q Consensus 150 ~~-~~~~~~~gs~IiiTTR~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~ 200 (1051)
+. .+. ...-++|.+|.......... ......+++...+.++..+++...
T Consensus 299 Lkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 299 LKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred hHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 22 211 12346666666544322111 112236889999999988887653
No 138
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.92 E-value=0.00023 Score=81.88 Aligned_cols=163 Identities=15% Similarity=0.232 Sum_probs=90.0
Q ss_pred CCCCCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc-----ceEEEee
Q 048831 21 PKTVKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY-----ASSFLAD 84 (1051)
Q Consensus 21 ~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-----~~~~~~~ 84 (1051)
.....++.|.+..++++...+.. +-...+-+.|+|++|+|||++|+++++.+...+. ...|+ +
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl-~ 256 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL-N 256 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE-e
Confidence 33446788899999998877532 1123567999999999999999999998765421 22333 2
Q ss_pred hhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh-hCCCeEEEEEeCCCCHH---------H-----HHHH
Q 048831 85 VRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR-LRQQKVLLVIDDVADVE---------Q-----LQSL 149 (1051)
Q Consensus 85 ~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-l~~k~~LlVlDdv~~~~---------~-----~~~l 149 (1051)
+.... ++...... ............++. ..+++++|+||+++..- + +..+
T Consensus 257 v~~~e------------Ll~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~L 321 (512)
T TIGR03689 257 IKGPE------------LLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQL 321 (512)
T ss_pred ccchh------------hcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHH
Confidence 22110 00000000 000000111111111 13578999999996431 1 2233
Q ss_pred hcCCCCCC--CCCEEEEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhh
Q 048831 150 AGKRDWFG--LGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 150 ~~~~~~~~--~gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
+..+.... .+..||.||......... .++. .+++...+.++..++|..+.
T Consensus 322 L~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~--~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 322 LSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDV--KIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHHhcccccCCceEEEeccCChhhCCHhhcCccccce--EEEeCCCCHHHHHHHHHHHh
Confidence 33332211 334455566544332221 2233 69999999999999998876
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00019 Score=85.56 Aligned_cols=196 Identities=18% Similarity=0.148 Sum_probs=108.0
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccc----eEEEe-ehhhhhhcCCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYA----SSFLA-DVRERFEKEGS 94 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~----~~~~~-~~~~~~~~~~~ 94 (1051)
.|....+++|.+...+.|...+..+ .-.+.+.++|+.|+||||+|+.++..+--.... .|-.+ .++........
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 3456788999999999999998754 234678999999999999999998865311100 00000 00000000000
Q ss_pred HHHHHHHHHHHHhccCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEe-C
Q 048831 95 VISLQKQLLSNLLKLGDISIWHVDDGINIIGSR----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITT-R 167 (1051)
Q Consensus 95 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R 167 (1051)
. + ..+. . ......++....+.+. ..+++=++|+|+++.. ...+.|+..+..-.+++.+|++| +
T Consensus 91 --n----~-~~ld-~--~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 91 --N----I-HELD-A--ASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred --c----e-EEec-c--cccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 0 0 0000 0 0000011111111111 1234447889998654 34666666555444566766655 4
Q ss_pred ChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 168 DKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
...+..... ....++++.+++.++....+.+.+-..+...+ .+.+..|++.++|..--+
T Consensus 161 ~~kIl~tI~-SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~--~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 161 KHKILPTIL-SRCQIFDFNRIQVADIVNHLQYVASKEGITAE--PEALNVIAQKADGGMRDA 219 (614)
T ss_pred chhchHHHH-hhhheeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 333333211 11238999999999999999877644332222 256788899999976433
No 140
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.88 E-value=0.00033 Score=80.55 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=97.4
Q ss_pred cccchhHHH--HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc-ceEEEeehhhhhhcCCCHHHHHHHHH
Q 048831 27 LVGIESRLE--KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY-ASSFLADVRERFEKEGSVISLQKQLL 103 (1051)
Q Consensus 27 ~vGr~~~~~--~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll 103 (1051)
.+|...... .+.++..........+.|+|..|+|||+||+++++.+..+.. ..+.+.... ....++.
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~----------~~~~~~~ 182 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE----------KFTNDFV 182 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH----------HHHHHHH
Confidence 456554422 233333322222356899999999999999999998776543 223333222 2223333
Q ss_pred HHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH---H-HHHHhcCCCC-CCCCCEEEEEeCCh-hhhHhh--
Q 048831 104 SNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE---Q-LQSLAGKRDW-FGLGSRILITTRDK-QLLVAH-- 175 (1051)
Q Consensus 104 ~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~-~~~~~~-- 175 (1051)
..+... ....+.+.+++ .-+|||||++... . .+.+...+.. ...|..+|||+... ......
T Consensus 183 ~~~~~~----------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~ 251 (405)
T TIGR00362 183 NALRNN----------KMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEE 251 (405)
T ss_pred HHHHcC----------CHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhh
Confidence 333211 11223333433 2378899996431 1 1222221111 12355677777642 111111
Q ss_pred ----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHH
Q 048831 176 ----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALK 230 (1051)
Q Consensus 176 ----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 230 (1051)
......++++++.+.++..+++.+.+-...... .+++...|++++.|..-.+.
T Consensus 252 ~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l--~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 252 RLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLEL--PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred hhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHH
Confidence 111223689999999999999998875433222 24667778888887665443
No 141
>PRK06620 hypothetical protein; Validated
Probab=97.88 E-value=0.00014 Score=75.00 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=76.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL 128 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l 128 (1051)
+.+.|||++|+|||+||+++++.... .++. ... ... +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~---~~~--------~~~-------------------------~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK---DIF--------FNE-------------------------EIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcc---hhh--------hch-------------------------hHH
Confidence 67899999999999999997765321 1211 000 000 001
Q ss_pred CCCeEEEEEeCCCCHHHHHHHhcCCCC-CCCCCEEEEEeCChhhh---Hhh--CCCCcceEEcCCCChhHHHHHHHHhhh
Q 048831 129 RQQKVLLVIDDVADVEQLQSLAGKRDW-FGLGSRILITTRDKQLL---VAH--EVDEEHILNLDVLNDDEALQLFSMKAF 202 (1051)
Q Consensus 129 ~~k~~LlVlDdv~~~~~~~~l~~~~~~-~~~gs~IiiTTR~~~~~---~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 202 (1051)
+ ..-++++||++...+ ..+...+.. ...|..||+|++..... ... .....-++++++++.++..+++.+.+.
T Consensus 84 ~-~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 84 E-KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred h-cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 1 224678899975432 112111110 13467899988754221 000 111223799999999998888887764
Q ss_pred cCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 203 KSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 203 ~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.... .-.+++.+-|++++.|.--.+
T Consensus 162 ~~~l--~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 162 ISSV--TISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HcCC--CCCHHHHHHHHHHccCCHHHH
Confidence 3221 122366677777776654433
No 142
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.87 E-value=1.6e-05 Score=63.76 Aligned_cols=57 Identities=32% Similarity=0.457 Sum_probs=27.9
Q ss_pred CCCEEEecCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCC
Q 048831 569 DLSELYLDGTYITEVPS-SIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGC 625 (1051)
Q Consensus 569 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c 625 (1051)
+|++|++++|.++.+|. .+..+++|++|++++|.....-|..+.++++|+.|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 44555555555555543 3455555555555544433333334445555555555544
No 143
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00033 Score=71.70 Aligned_cols=267 Identities=21% Similarity=0.243 Sum_probs=136.2
Q ss_pred CCCCCCccccchhHHHHHHHHhcC---CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGT---GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVI 96 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 96 (1051)
.|....+|||.+.-.++|.=.+.. .....-.|.++|++|.||||||.-+++.+...+... .....++.+.
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp~leK~gD-- 93 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGPALEKPGD-- 93 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccccccChhh--
Confidence 466778999998888777655543 223456899999999999999999999876543211 0111112111
Q ss_pred HHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-HHHH-HhcCCCC--------CCCCCE-----
Q 048831 97 SLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE-QLQS-LAGKRDW--------FGLGSR----- 161 (1051)
Q Consensus 97 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~-~~~~-l~~~~~~--------~~~gs~----- 161 (1051)
...++.. |+...+ +.+|.+.... ..+. +-++... -++++|
T Consensus 94 --laaiLt~----------------------Le~~DV-LFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ld 148 (332)
T COG2255 94 --LAAILTN----------------------LEEGDV-LFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLD 148 (332)
T ss_pred --HHHHHhc----------------------CCcCCe-EEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEecc
Confidence 1112222 222222 3345553221 0111 1111111 123333
Q ss_pred ------EEEEeCChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHHH
Q 048831 162 ------ILITTRDKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGSF 235 (1051)
Q Consensus 162 ------IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~~ 235 (1051)
|=.|||--.+.....-.-..+.+++--+.+|-.+...+.|..-+. +-.++.+.+|+++.+|-|--..-+-..
T Consensus 149 LppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 149 LPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred CCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHHHH
Confidence 335888754433322111126788889999999999988843332 233467889999999999654444333
Q ss_pred hcCCCHHHHHHHHHH--hhcCCCchHHHHHHHhccCCChhcccceeeeecccCC--CCHHHHHHHHhhcCC-CcchhhhH
Q 048831 236 LIGRSVDQWRSALER--LKRDPSNKIMSILQISFDGLQDSEKKIFLDVACFFKQ--KNRDYVTKILEGCGF-FPVIGIEV 310 (1051)
Q Consensus 236 L~~~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~g~-~~~~~l~~ 310 (1051)
.++ ...+... +...........|.+--.+|+...++.+.-+.-.+.+ ...+.+...+..+.. +.+..=--
T Consensus 227 VRD-----fa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPy 301 (332)
T COG2255 227 VRD-----FAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPY 301 (332)
T ss_pred HHH-----HHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHH
Confidence 321 0000000 0000011233344444445666555555444433322 234444443322111 11111134
Q ss_pred hhccCceeEeCCCce
Q 048831 311 LIERSLLTVDDYNTL 325 (1051)
Q Consensus 311 L~~~sLi~~~~~~~~ 325 (1051)
|++.++++....|++
T Consensus 302 Liq~gfi~RTpRGR~ 316 (332)
T COG2255 302 LIQQGFIQRTPRGRI 316 (332)
T ss_pred HHHhchhhhCCCcce
Confidence 778888887765543
No 144
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=0.00043 Score=79.42 Aligned_cols=154 Identities=15% Similarity=0.070 Sum_probs=84.3
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR 127 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 127 (1051)
..-+.|+|+.|+|||+||+++++.+......++++. . .....++...+... ....+++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~----------~~f~~~~~~~l~~~----------~~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-S----------ELFTEHLVSAIRSG----------EMQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-H----------HHHHHHHHHHHhcc----------hHHHHHHH
Confidence 356889999999999999999998765433344443 1 12223333333210 11233444
Q ss_pred hCCCeEEEEEeCCCCHH----HHHHHhcCCCC-CCCCCEEEEEeCCh-hhh----Hhh--CCCCcceEEcCCCChhHHHH
Q 048831 128 LRQQKVLLVIDDVADVE----QLQSLAGKRDW-FGLGSRILITTRDK-QLL----VAH--EVDEEHILNLDVLNDDEALQ 195 (1051)
Q Consensus 128 l~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~-~~~----~~~--~~~~~~~~~l~~L~~~ea~~ 195 (1051)
++. .-+|++||+.... ..+.+...+.. ...|..||+||... ... ... ......++++.+++.++..+
T Consensus 200 ~~~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 200 YRN-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred ccc-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence 433 3478889985431 11122211110 12356788888542 111 111 12222489999999999999
Q ss_pred HHHHhhhcCCCCchHHHHHHHHHHHhcCCC
Q 048831 196 LFSMKAFKSHQPVEEYVELSKRVLNYASGL 225 (1051)
Q Consensus 196 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 225 (1051)
++.+++-..... -.+++..-|++...|.
T Consensus 279 iL~~k~~~~~~~--l~~evl~~la~~~~~d 306 (445)
T PRK12422 279 FLERKAEALSIR--IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHhcCCC
Confidence 998887443221 1234555566655543
No 145
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.79 E-value=0.00031 Score=87.48 Aligned_cols=159 Identities=10% Similarity=0.076 Sum_probs=88.7
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc------cceEEEeehhhhhhcCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF------YASSFLADVRERFEKEG 93 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~ 93 (1051)
.+...+.++||+.+++++...|.... ..-+.++|.+|+|||+||+.++.++.... ...++..++........
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~ 250 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK 250 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccc
Confidence 34456679999999999999987643 24567999999999999999999875432 22333333322111000
Q ss_pred CHHHHHHHHHHHHhccCCCccccchhhHH-HHHHhh-CCCeEEEEEeCCCCHH---------HHHH-HhcCCCCCCCCCE
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDDGIN-IIGSRL-RQQKVLLVIDDVADVE---------QLQS-LAGKRDWFGLGSR 161 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~-~i~~~l-~~k~~LlVlDdv~~~~---------~~~~-l~~~~~~~~~gs~ 161 (1051)
. ....+.... .+.+.. .+++++|++|++.... +... +.+.+. ...-+
T Consensus 251 ~-------------------~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~ 309 (857)
T PRK10865 251 Y-------------------RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELH 309 (857)
T ss_pred h-------------------hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCe
Confidence 0 001111111 222211 2478999999986442 1223 333321 12345
Q ss_pred EEEEeCChhhhHhhC-----CCCcceEEcCCCChhHHHHHHHHhh
Q 048831 162 ILITTRDKQLLVAHE-----VDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 162 IiiTTR~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
+|-||.......... ......+.+...+.++..+++....
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 665555443211110 1112256777779999999886544
No 146
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.79 E-value=0.00036 Score=87.38 Aligned_cols=159 Identities=9% Similarity=0.102 Sum_probs=89.5
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc------cceEEEeehhhhhhcCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF------YASSFLADVRERFEKEG 93 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~ 93 (1051)
.+...+.+|||+.+++++...|.... ...+.++|++|+|||++|+.++.++...+ ...+|..++........
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~ 245 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAK 245 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcch
Confidence 44455679999999999999987643 24566899999999999999999875532 22334332221110000
Q ss_pred CHHHHHHHHHHHHhccCCCccccchhhHHHHHHhh-C-CCeEEEEEeCCCCHH---------HHHHHhcCCCCCCCC-CE
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL-R-QQKVLLVIDDVADVE---------QLQSLAGKRDWFGLG-SR 161 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l-~-~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~ 161 (1051)
. ..+.+.....+.+.+ + +++.+|++|++.... +...++.+.. ..| -+
T Consensus 246 ~-------------------~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~ 304 (852)
T TIGR03346 246 Y-------------------RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELH 304 (852)
T ss_pred h-------------------hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceE
Confidence 0 001111122222222 2 468999999986432 1222222221 233 35
Q ss_pred EEEEeCChhhhHhhC-----CCCcceEEcCCCChhHHHHHHHHhh
Q 048831 162 ILITTRDKQLLVAHE-----VDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 162 IiiTTR~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
+|.+|.......... ......+.+...+.++..+++....
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 555555443211110 1112368899999999999887653
No 147
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.00067 Score=79.14 Aligned_cols=156 Identities=14% Similarity=0.155 Sum_probs=87.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcccc-ceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFY-ASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR 127 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 127 (1051)
..+.|||..|.|||.|++++++.+...+. ..+.+... ..+..++...+.. .....+++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita----------eef~~el~~al~~----------~~~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS----------EEFTNEFINSIRD----------GKGDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHHHHHHHHHHh----------ccHHHHHHH
Confidence 45899999999999999999998765432 23333322 2223333333321 011233344
Q ss_pred hCCCeEEEEEeCCCCH---HHHH-HHhcCCCC-CCCCCEEEEEeCChh-----hhHh--hCCCCcceEEcCCCChhHHHH
Q 048831 128 LRQQKVLLVIDDVADV---EQLQ-SLAGKRDW-FGLGSRILITTRDKQ-----LLVA--HEVDEEHILNLDVLNDDEALQ 195 (1051)
Q Consensus 128 l~~k~~LlVlDdv~~~---~~~~-~l~~~~~~-~~~gs~IiiTTR~~~-----~~~~--~~~~~~~~~~l~~L~~~ea~~ 195 (1051)
++.- =+|||||++.. +.++ .+...+.. ...|..|||||+..- +... .......+++|+..+.+.-.+
T Consensus 375 y~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YREM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hhcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 4433 47888999543 2222 22221111 124567888887531 1110 112223489999999999999
Q ss_pred HHHHhhhcCCCCchHHHHHHHHHHHhcCCCch
Q 048831 196 LFSMKAFKSHQPVEEYVELSKRVLNYASGLPL 227 (1051)
Q Consensus 196 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 227 (1051)
++.+++....... -+++++-|+++..+..-
T Consensus 454 IL~kka~~r~l~l--~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 454 ILRKKAVQEQLNA--PPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHHHhcCCCC--CHHHHHHHHHhccCCHH
Confidence 9998875433222 23566666666665543
No 148
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.74 E-value=0.0005 Score=73.31 Aligned_cols=170 Identities=20% Similarity=0.250 Sum_probs=98.3
Q ss_pred CCCccccchhHHHHHHHHhcCCCC-CeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHH
Q 048831 23 TVKELVGIESRLEKLRFLMGTGST-DVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQ 101 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~~~~~-~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (1051)
....+-+|+.+++.+..++...+. -+..|.|+|-+|.|||.+.+++.+.... ..+|+. +.+.+.. ..+..+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n-~~ecft~----~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN-CVECFTY----AILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee-hHHhccH----HHHHHH
Confidence 345688999999999999987654 3456799999999999999999987632 345654 5554442 445566
Q ss_pred HHHHHh-ccCCCcc-----ccchhhHHHHHH--hhC--CCeEEEEEeCCCCHHHHHH-----HhcCCCCCCCCCEEEEEe
Q 048831 102 LLSNLL-KLGDISI-----WHVDDGINIIGS--RLR--QQKVLLVIDDVADVEQLQS-----LAGKRDWFGLGSRILITT 166 (1051)
Q Consensus 102 ll~~l~-~~~~~~~-----~~~~~~~~~i~~--~l~--~k~~LlVlDdv~~~~~~~~-----l~~~~~~~~~gs~IiiTT 166 (1051)
|+.++. ...+... .+..+.+..+.+ ... ++.++||||+++...+.++ +...........-+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 666653 1111111 111122222222 122 4689999999976654222 211111111223344444
Q ss_pred CChhh---hHhhCCCCcceEEcCCCChhHHHHHHHHh
Q 048831 167 RDKQL---LVAHEVDEEHILNLDVLNDDEALQLFSMK 200 (1051)
Q Consensus 167 R~~~~---~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 200 (1051)
-.... ...++.....++-...-+.+|..+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 33221 11234333335677788889998888654
No 149
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00041 Score=76.25 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=60.1
Q ss_pred CeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCc
Q 048831 131 QKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPV 208 (1051)
Q Consensus 131 k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 208 (1051)
.|+ +|+|+++.. .....++..+..-.+++.+|+||.+.......-...-..+.+.+++.+++.+.+.... . ...
T Consensus 107 ~kv-~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~-~~~- 182 (328)
T PRK05707 107 RKV-VLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P-ESD- 182 (328)
T ss_pred CeE-EEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c-cCC-
Confidence 444 467999754 4455666655544567788888877643221111122379999999999999987653 1 111
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHH
Q 048831 209 EEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 209 ~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
.+.+..++..++|.|+....+
T Consensus 183 ---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 234567789999999765544
No 150
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00074 Score=80.42 Aligned_cols=202 Identities=14% Similarity=0.136 Sum_probs=107.6
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc-c-c-ceEEEe-ehhhhhhcCCCH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE-F-Y-ASSFLA-DVRERFEKEGSV 95 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f-~-~~~~~~-~~~~~~~~~~~~ 95 (1051)
.|....++||.+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-.. . . ..|-.+ .+++.......
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~- 88 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSV- 88 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCC-
Confidence 4566788999998889999988754 234677899999999999999999865321 1 0 000000 00000000000
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHh-hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-hhh
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSR-LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRD-KQL 171 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~~ 171 (1051)
+ +. .+.........+..+....+... ..+++-++|+|+++.. .....|+..+..-.+...+|++|.+ ..+
T Consensus 89 -d----~~-eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 89 -D----VF-EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred -C----ee-eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 0 00 00000000000111111111100 1234457889999654 3455566555444456677665544 333
Q ss_pred hHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCc-hHHHHH
Q 048831 172 LVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLP-LALKVL 232 (1051)
Q Consensus 172 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~ 232 (1051)
..... .....+++.+++.++....+...+-..+... ..+....|++.++|.. .|+..+
T Consensus 163 ~~tI~-SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 163 PITIL-SRCQRFDFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hHHHH-HhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 32211 1123788999999999888876653333222 2356778889998865 455444
No 151
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.72 E-value=3.4e-05 Score=61.78 Aligned_cols=59 Identities=34% Similarity=0.508 Sum_probs=31.4
Q ss_pred CCCCEEecCCCCCCCccc-ccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCC
Q 048831 591 TGLELLNLNDCKNLVRLP-NSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTA 650 (1051)
Q Consensus 591 ~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 650 (1051)
++|++|++++|. +..+| ..+.++++|++|++++|.....-|..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345666666653 33333 345556666666666554433333455555566666555554
No 152
>CHL00176 ftsH cell division protein; Validated
Probab=97.70 E-value=0.00062 Score=81.26 Aligned_cols=173 Identities=17% Similarity=0.225 Sum_probs=97.9
Q ss_pred CCCccccchhHHHHHHHHhc---CC-------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcC
Q 048831 23 TVKELVGIESRLEKLRFLMG---TG-------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKE 92 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 92 (1051)
...+++|.+...+++.+.+. .. ....+-|.++|++|+|||++|++++......| +.....+
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~----i~is~s~----- 251 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF----FSISGSE----- 251 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----eeccHHH-----
Confidence 44678899887777766542 11 12245799999999999999999998653322 1111111
Q ss_pred CCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHHhcCCCCC
Q 048831 93 GSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE----------------QLQSLAGKRDWF 156 (1051)
Q Consensus 93 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~ 156 (1051)
... ... +. ........+.+.....+.+|++||++... .+..++.....+
T Consensus 252 -----f~~----~~~-g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~ 316 (638)
T CHL00176 252 -----FVE----MFV-GV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF 316 (638)
T ss_pred -----HHH----Hhh-hh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc
Confidence 000 000 00 01112223344445678999999996431 133344333221
Q ss_pred --CCCCEEEEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCC
Q 048831 157 --GLGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASG 224 (1051)
Q Consensus 157 --~~gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 224 (1051)
..+-.||.||......... ..+. .+.+...+.++-.+++..++...... .......+++.+.|
T Consensus 317 ~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~--~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 317 KGNKGVIVIAATNRVDILDAALLRPGRFDR--QITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred cCCCCeeEEEecCchHhhhhhhhccccCce--EEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 2345666677664432221 1233 78999999999999998877432211 12334567777777
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.00089 Score=73.19 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=106.7
Q ss_pred CccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc---------------ccceEEEeehhhhh
Q 048831 25 KELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE---------------FYASSFLADVRERF 89 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------f~~~~~~~~~~~~~ 89 (1051)
.+++|.+...+.+.+.+..+. -.+...++|+.|+||+++|.+++..+-.. ++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 568999999999999887642 24789999999999999999998865321 2222333211000
Q ss_pred hcCCCHHHHHHHHHHHHhccCCC-ccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCE
Q 048831 90 EKEGSVISLQKQLLSNLLKLGDI-SIWHVDDGINIIGSRL-----RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSR 161 (1051)
Q Consensus 90 ~~~~~~~~l~~~ll~~l~~~~~~-~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 161 (1051)
+.... -...+......... .....+ .++.+.+.+ .+.+-++|+|+++.. .....|+..+..-. .+.
T Consensus 82 ~g~~~----~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 QGKLI----TASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred ccccc----chhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 00000 00000110000000 000111 122333333 245568889998654 34555555444333 445
Q ss_pred EEEEeCCh-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 162 ILITTRDK-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 162 IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
+|++|.+. .+..... .....+.+.+++.++..+.+........ . ......++..++|.|..+..+
T Consensus 156 fILi~~~~~~Ll~TI~-SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~---~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 156 LILIAPSPESLLPTIV-SRCQIIPFYRLSDEQLEQVLKRLGDEEI--L---NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEEECChHhCcHHHH-hhceEEecCCCCHHHHHHHHHHhhcccc--c---hhHHHHHHHHcCCCHHHHHHH
Confidence 66555443 3333222 1224899999999999999987642111 1 112357899999999665543
No 154
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=9.5e-07 Score=99.94 Aligned_cols=180 Identities=27% Similarity=0.320 Sum_probs=111.6
Q ss_pred ccccccCceecEEeeeCCCCCCcCchhhCCC-CCCCEEEecCccCcccC----cccc---C---CCCCCEEecCCCCCCC
Q 048831 537 PVTISSLKCLRTLKLSGCSKLKKFPAIVASM-EDLSELYLDGTYITEVP----SSIE---L---LTGLELLNLNDCKNLV 605 (1051)
Q Consensus 537 p~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l-~~L~~L~L~~~~i~~lp----~~i~---~---l~~L~~L~L~~~~~l~ 605 (1051)
|..|..+++|++|.|.+|+.... ..+..+ ..|++|-.. +.+..+- ..++ + ...|...+.++| .+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHH
Confidence 55677799999999999975441 111111 123333222 1111110 0011 0 123444444443 355
Q ss_pred cccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCc
Q 048831 606 RLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNL 685 (1051)
Q Consensus 606 ~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 685 (1051)
.+.+++.-++.|+.|+|+.|..... +.+..+++|++|||+.|.+..+|..-..-.+|+.|.+.+|....
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t--------- 246 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT--------- 246 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHh---------
Confidence 5666677778888888888754432 26777888888888888877776543333448888888776433
Q ss_pred cccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCce
Q 048831 686 PFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFV 746 (1051)
Q Consensus 686 ~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 746 (1051)
...+.++.+|+.||+++|-+.+..-...++.|..|+.|+|.||.+.
T Consensus 247 ---------------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 247 ---------------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ---------------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 2346678888889999887765544556677888899999998765
No 155
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.68 E-value=0.0012 Score=71.29 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=81.1
Q ss_pred ccccchhHHHHHHHHhc---C---------CC-CCeeEEEEEcCCcchHHHHHHHHHHHHhccc--cceEEEeehhhhhh
Q 048831 26 ELVGIESRLEKLRFLMG---T---------GS-TDVRMIGIWGMGGLGKTTLARVVYDLISHEF--YASSFLADVRERFE 90 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~---~---------~~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~ 90 (1051)
.++|.+...++|.++.. . .. ....-+.++|++|+||||+|+.++..+.... ....|+. +..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~-v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS-VTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE-ecH---
Confidence 36787776666654321 1 00 1123688999999999999999887654321 1112222 110
Q ss_pred cCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-----------HHHHHHhcCCCCCCCC
Q 048831 91 KEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV-----------EQLQSLAGKRDWFGLG 159 (1051)
Q Consensus 91 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g 159 (1051)
. ++...+.... .......+.+ . ..-+|+||+++.. +.++.+...+.....+
T Consensus 99 -----~----~l~~~~~g~~------~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~ 160 (284)
T TIGR02880 99 -----D----DLVGQYIGHT------APKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDD 160 (284)
T ss_pred -----H----HHhHhhcccc------hHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCC
Confidence 1 1222211000 0111122222 1 2358889999632 2234455444434445
Q ss_pred CEEEEEeCChhhhHhhCCC------CcceEEcCCCChhHHHHHHHHhhh
Q 048831 160 SRILITTRDKQLLVAHEVD------EEHILNLDVLNDDEALQLFSMKAF 202 (1051)
Q Consensus 160 s~IiiTTR~~~~~~~~~~~------~~~~~~l~~L~~~ea~~Lf~~~a~ 202 (1051)
.+||+++............ -...+++.+++.+|..+++...+-
T Consensus 161 ~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 161 LVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred EEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 5666666543221111111 113799999999999999987763
No 156
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.67 E-value=0.00063 Score=80.18 Aligned_cols=175 Identities=19% Similarity=0.240 Sum_probs=93.9
Q ss_pred CCCccccchhHHHHHHHHhc---C-------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcC
Q 048831 23 TVKELVGIESRLEKLRFLMG---T-------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKE 92 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 92 (1051)
...+++|.+...+++.+++. . +....+-+.++|++|+|||++|++++......| +..+...
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i~~~~----- 123 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSISGSD----- 123 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eeccHHH-----
Confidence 34668898877776665543 1 122345689999999999999999998653322 1111111
Q ss_pred CCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHHhcCCCCC
Q 048831 93 GSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE----------------QLQSLAGKRDWF 156 (1051)
Q Consensus 93 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~ 156 (1051)
+..... +. ........+.......+.+|+|||++... .+..++..+...
T Consensus 124 ---------~~~~~~-g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 124 ---------FVEMFV-GV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred ---------HHHHHh-cc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 111100 00 01112223333334567899999985431 122233322211
Q ss_pred --CCCCEEEEEeCChhhhHh-----hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCc
Q 048831 157 --GLGSRILITTRDKQLLVA-----HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLP 226 (1051)
Q Consensus 157 --~~gs~IiiTTR~~~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 226 (1051)
..+-.||.||........ ..++. .+.+...+.++-.+++..+........+ .....+++.+.|.-
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~--~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~s 260 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDR--QVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGFS 260 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceE--EEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCCC
Confidence 233455666655432111 12333 7899999999999999877643322211 12346777777743
No 157
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=6.5e-06 Score=94.91 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=15.0
Q ss_pred CCeeEEEcCccCcccccccccCCCCCCEEecCCC
Q 048831 441 DKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHS 474 (1051)
Q Consensus 441 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~ 474 (1051)
..+..+.+..+.+.+.-..+..+.+|..|++..|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n 105 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN 105 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeecccc
Confidence 3344444444544443233444444444444444
No 158
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.67 E-value=4.1e-05 Score=80.23 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=55.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhc-cccceEEEeehhhhhhcCCCHHHHHHHHHHHHhcc-CCCcc----ccchhhH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISH-EFYASSFLADVRERFEKEGSVISLQKQLLSNLLKL-GDISI----WHVDDGI 121 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~----~~~~~~~ 121 (1051)
...++|.|++|+|||||++++++.+.. +|+..+|+..+.+.. .+ +.++++++...+... .+... .......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~--~e-v~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP--EE-VTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC--cc-HHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 367999999999999999999997654 578888877554421 12 256666663322211 01100 0111112
Q ss_pred HHHHHh-hCCCeEEEEEeCCCCH
Q 048831 122 NIIGSR-LRQQKVLLVIDDVADV 143 (1051)
Q Consensus 122 ~~i~~~-l~~k~~LlVlDdv~~~ 143 (1051)
...... -.++++++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 222222 2479999999998654
No 159
>CHL00181 cbbX CbbX; Provisional
Probab=97.66 E-value=0.0024 Score=68.99 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=81.4
Q ss_pred ccccchhHHHHHHHHhc---C---------CC-CCeeEEEEEcCCcchHHHHHHHHHHHHhcc-c-cceEEEeehhhhhh
Q 048831 26 ELVGIESRLEKLRFLMG---T---------GS-TDVRMIGIWGMGGLGKTTLARVVYDLISHE-F-YASSFLADVRERFE 90 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~---~---------~~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f-~~~~~~~~~~~~~~ 90 (1051)
.++|.+...++|.++.. . .. .....+.++|++|+||||+|+.+++.+... + ...-|+. +..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-v~~--- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-VTR--- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-ecH---
Confidence 46777666665544421 0 11 123458899999999999999998865321 1 0111221 110
Q ss_pred cCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-----------HHHHHHhcCCCCCCCC
Q 048831 91 KEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV-----------EQLQSLAGKRDWFGLG 159 (1051)
Q Consensus 91 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g 159 (1051)
. .+........ .......+.+ .. .-+|++|+++.. +..+.+.........+
T Consensus 100 -----~----~l~~~~~g~~------~~~~~~~l~~-a~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~ 161 (287)
T CHL00181 100 -----D----DLVGQYIGHT------APKTKEVLKK-AM--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDD 161 (287)
T ss_pred -----H----HHHHHHhccc------hHHHHHHHHH-cc--CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCC
Confidence 1 1222111000 0111112222 12 248889999642 2344455544434445
Q ss_pred CEEEEEeCChhhhHh--------hCCCCcceEEcCCCChhHHHHHHHHhhhc
Q 048831 160 SRILITTRDKQLLVA--------HEVDEEHILNLDVLNDDEALQLFSMKAFK 203 (1051)
Q Consensus 160 s~IiiTTR~~~~~~~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 203 (1051)
.+||+++........ ..... .+.+.+++.+|..+++...+-.
T Consensus 162 ~~vI~ag~~~~~~~~~~~np~L~sR~~~--~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 162 LVVIFAGYKDRMDKFYESNPGLSSRIAN--HVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEEEEeCCcHHHHHHHhcCHHHHHhCCc--eEEcCCcCHHHHHHHHHHHHHH
Confidence 667777654332111 11233 7999999999999999887643
No 160
>PRK08116 hypothetical protein; Validated
Probab=97.62 E-value=0.00033 Score=74.89 Aligned_cols=102 Identities=22% Similarity=0.238 Sum_probs=56.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL 128 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l 128 (1051)
..+.|+|..|+|||+||.++++.+..+...++++. + ..+...+....... .......+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~----------~~ll~~i~~~~~~~-------~~~~~~~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-F----------PQLLNRIKSTYKSS-------GKEDENEIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-H----------HHHHHHHHHHHhcc-------ccccHHHHHHHh
Confidence 45899999999999999999998876643344443 2 22333333222210 011122334445
Q ss_pred CCCeEEEEEeCCCC--HHHH--HHHhcCCCC-CCCCCEEEEEeCCh
Q 048831 129 RQQKVLLVIDDVAD--VEQL--QSLAGKRDW-FGLGSRILITTRDK 169 (1051)
Q Consensus 129 ~~k~~LlVlDdv~~--~~~~--~~l~~~~~~-~~~gs~IiiTTR~~ 169 (1051)
.+-. ||||||+.. ...| +.+...+.. ...|..+||||...
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 5444 889999932 2222 222222211 13566789998753
No 161
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.61 E-value=0.00043 Score=84.17 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=85.1
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc------cceEEEeehhhhhhcCCCHHH
Q 048831 24 VKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF------YASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
...++||+.+++++.+.|.... ..-+.++|++|+|||++|+.++.++...- ...+|..+..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~----------- 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG----------- 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH-----------
Confidence 3469999999999999887643 23457899999999999999998754321 1122221110
Q ss_pred HHHHHHHHHhccCCCccccchhhHHHHHHhh-CCCeEEEEEeCCCCH----------HHHHHHhcCCCCCCCC-CEEEEE
Q 048831 98 LQKQLLSNLLKLGDISIWHVDDGINIIGSRL-RQQKVLLVIDDVADV----------EQLQSLAGKRDWFGLG-SRILIT 165 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l-~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~g-s~IiiT 165 (1051)
.++. +.. ...+.+.....+.+.+ +.++.+|++|+++.. .+...++.+.. ..| -+||-+
T Consensus 252 ---~lla----G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgA 321 (758)
T PRK11034 252 ---SLLA----GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGS 321 (758)
T ss_pred ---HHhc----ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEec
Confidence 1110 000 0011222222222222 346679999998632 12222222211 223 445555
Q ss_pred eCChhhhHhhC-----CCCcceEEcCCCChhHHHHHHHHhh
Q 048831 166 TRDKQLLVAHE-----VDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 166 TR~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
|.......... ......+.++.++.+++.+++....
T Consensus 322 Tt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred CChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 54433211100 0112379999999999999998653
No 162
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.59 E-value=0.00011 Score=80.11 Aligned_cols=93 Identities=15% Similarity=0.075 Sum_probs=56.6
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhc-cccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCC-Ccc----ccchhhH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISH-EFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGD-ISI----WHVDDGI 121 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~~~----~~~~~~~ 121 (1051)
-+..+|+|++|+||||||+++|+.+.. +|+..+|+..+.+..+ + +.++++++...+....- ... .......
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~--E-VtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPE--E-VTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchh--H-HHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 356899999999999999999997765 6888889886665321 2 25666666532221110 000 0001111
Q ss_pred HHHHHh-hCCCeEEEEEeCCCCH
Q 048831 122 NIIGSR-LRQQKVLLVIDDVADV 143 (1051)
Q Consensus 122 ~~i~~~-l~~k~~LlVlDdv~~~ 143 (1051)
...+.. -.+++++|++|++...
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHH
Confidence 111121 2579999999999544
No 163
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.59 E-value=0.00048 Score=65.35 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEEcCCcchHHHHHHHHHHHHh
Q 048831 51 IGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 51 v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 164
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0008 Score=71.28 Aligned_cols=168 Identities=15% Similarity=0.326 Sum_probs=97.7
Q ss_pred CccccchhHHHHHHHHhcCC-----------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCC
Q 048831 25 KELVGIESRLEKLRFLMGTG-----------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEG 93 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 93 (1051)
...=|-+..+++|.+...-. =..++=|.+||++|.|||-||++|+++....| +..+..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgS------ 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGS------ 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccH------
Confidence 55668888898888776431 13467799999999999999999999866544 321111
Q ss_pred CHHHHHHHHHHHHhccCCCccccchhhHHHHHHh---hC-CCeEEEEEeCCCCHH--------------H--HHHHhcCC
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR---LR-QQKVLLVIDDVADVE--------------Q--LQSLAGKR 153 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~---l~-~k~~LlVlDdv~~~~--------------~--~~~l~~~~ 153 (1051)
.+.+.. . .++..++++. .+ ..+..|.+|.+|... | +-.|+..+
T Consensus 220 ---ElVqKY----i----------GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 220 ---ELVQKY----I----------GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred ---HHHHHH----h----------ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc
Confidence 111111 1 1222333333 22 467899999886421 1 33344444
Q ss_pred CCCC--CCCEEEEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCc-hHHHHHHHHHHHhcCCC
Q 048831 154 DWFG--LGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPV-EEYVELSKRVLNYASGL 225 (1051)
Q Consensus 154 ~~~~--~gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~ 225 (1051)
.-|. ..-+||..|.-.+++... ..+. .+++..-+.+.-.++|.-++.+-.... -+++ .+++.+.|.
T Consensus 283 DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DR--kIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~ 356 (406)
T COG1222 283 DGFDPRGNVKVIMATNRPDILDPALLRPGRFDR--KIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGF 356 (406)
T ss_pred cCCCCCCCeEEEEecCCccccChhhcCCCcccc--eeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCC
Confidence 4443 345788877655444332 2333 789987777777788877764433222 2333 444555554
Q ss_pred c
Q 048831 226 P 226 (1051)
Q Consensus 226 P 226 (1051)
-
T Consensus 357 s 357 (406)
T COG1222 357 S 357 (406)
T ss_pred c
Confidence 3
No 165
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.58 E-value=0.00066 Score=76.95 Aligned_cols=121 Identities=23% Similarity=0.200 Sum_probs=77.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhC
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLR 129 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~ 129 (1051)
++.|.|+-++||||+++.+....... .+++.......... .+ .+.+.. +.+.-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~----~l-~d~~~~------------------~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRI----EL-LDLLRA------------------YIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchh----hH-HHHHHH------------------HHHhhc
Confidence 99999999999999997776655544 44443221111111 11 111111 111111
Q ss_pred CCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhHhhC----CCCcceEEcCCCChhHHHHHH
Q 048831 130 QQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQLLVAHE----VDEEHILNLDVLNDDEALQLF 197 (1051)
Q Consensus 130 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~----~~~~~~~~l~~L~~~ea~~Lf 197 (1051)
.++..++||.|.....|+.....+...++. +|+||+.......... ......+++-||+..|-..+-
T Consensus 93 ~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 93 REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 277899999999999999888777666666 8999988765543321 122347999999999987653
No 166
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.57 E-value=0.0008 Score=66.50 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=41.5
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.|....+.||-++-++.+.-.... ++..-+.|.||+|+||||-+..+++.+-
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 455667899999999887665543 4567889999999999999999988653
No 167
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.56 E-value=1e-06 Score=99.61 Aligned_cols=101 Identities=23% Similarity=0.313 Sum_probs=58.6
Q ss_pred cCCCCCcEEEecCcccC--CcccccCcCceEEEEcCC----------CCCCCCCCCCCCCeeEEEcCccCcccccccccC
Q 048831 395 SLMTNLRFLNIGNVQLP--EGLEYLSNKLRLLNWHRY----------PLKSLPSNLQLDKIVEFQMCYSHIEELWKGIKP 462 (1051)
Q Consensus 395 ~~~~~Lr~L~l~~~~l~--~~~~~l~~~Lr~L~l~~~----------~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~ 462 (1051)
..+..||+|.+.++.+. .++..+...|..|..++. ....+...+....|...+.++|.+.-+-..+.-
T Consensus 106 fpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHH
Confidence 34567888888887664 344444455555554432 123333444555667777777777766666666
Q ss_pred CCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeC
Q 048831 463 LNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKG 496 (1051)
Q Consensus 463 l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~ 496 (1051)
++.|+.|+|++|+.... ..+..++.|++|||+.
T Consensus 186 l~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSY 218 (1096)
T ss_pred HHHhhhhccchhhhhhh-HHHHhccccccccccc
Confidence 77777777777654322 2444455555555544
No 168
>PRK12377 putative replication protein; Provisional
Probab=97.53 E-value=0.0013 Score=69.01 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=29.2
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
...+.|+|..|+|||+||.++++.+..+...+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998876654455554
No 169
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.53 E-value=6.9e-05 Score=54.90 Aligned_cols=34 Identities=41% Similarity=0.557 Sum_probs=17.2
Q ss_pred cCcEEeccCCCceeccccccCCCCCCEEeccCCc
Q 048831 734 SLKELYLSGNNFVTLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 734 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
+|++|++++|+++.+|..+.+|++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555445555555555555553
No 170
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.50 E-value=0.00066 Score=80.38 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=45.2
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCC---CCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGS---TDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
-.|....+++|.+..++++..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 356677889999999999999987532 3346899999999999999999997653
No 171
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.0018 Score=71.87 Aligned_cols=162 Identities=20% Similarity=0.207 Sum_probs=90.8
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHH
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGS 126 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 126 (1051)
....+.|||..|.|||.|++++.+......+...++....+ ....++...+.. ......++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se---------~f~~~~v~a~~~----------~~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE---------DFTNDFVKALRD----------NEMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH---------HHHHHHHHHHHh----------hhHHHHHH
Confidence 46789999999999999999999988777765444332222 122222222220 12234555
Q ss_pred hhCCCeEEEEEeCCCCHH---HH-HHHhcCCC-CCCCCCEEEEEeCChh---------hhHhhCCCCcceEEcCCCChhH
Q 048831 127 RLRQQKVLLVIDDVADVE---QL-QSLAGKRD-WFGLGSRILITTRDKQ---------LLVAHEVDEEHILNLDVLNDDE 192 (1051)
Q Consensus 127 ~l~~k~~LlVlDdv~~~~---~~-~~l~~~~~-~~~~gs~IiiTTR~~~---------~~~~~~~~~~~~~~l~~L~~~e 192 (1051)
.. .-=++++||++-.. .+ +.+...+. ....|-.||+|++... +....... .++++.+++.+.
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G--l~~~I~~Pd~e~ 248 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG--LVVEIEPPDDET 248 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce--eEEeeCCCCHHH
Confidence 55 33378899985321 11 22222221 1224458999886531 11222222 489999999999
Q ss_pred HHHHHHHhhhcCCC--CchHHHHHHHHHHHhcCCCchHHHH
Q 048831 193 ALQLFSMKAFKSHQ--PVEEYVELSKRVLNYASGLPLALKV 231 (1051)
Q Consensus 193 a~~Lf~~~a~~~~~--~~~~~~~~~~~i~~~~~G~PLal~~ 231 (1051)
...++.+++..... +.+...-++.++.+-.+-+.-|+..
T Consensus 249 r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~ 289 (408)
T COG0593 249 RLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNR 289 (408)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 99999987643332 3333334444443333333444433
No 172
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0027 Score=69.09 Aligned_cols=95 Identities=13% Similarity=0.116 Sum_probs=60.7
Q ss_pred CCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCChh-hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCC
Q 048831 130 QQKVLLVIDDVADVE--QLQSLAGKRDWFGLGSRILITTRDKQ-LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQ 206 (1051)
Q Consensus 130 ~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 206 (1051)
+++=++|+|+++... .-..|+..+..-.+++.+|++|.+.. +..... ..-..+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr-SRCq~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR-SRCQRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH-hhheEeeCCCcCHHHHHHHHHHcC----C
Confidence 345588899997653 34555555544456777877777543 222211 112378999999999998886531 1
Q ss_pred CchHHHHHHHHHHHhcCCCchHHHHHH
Q 048831 207 PVEEYVELSKRVLNYASGLPLALKVLG 233 (1051)
Q Consensus 207 ~~~~~~~~~~~i~~~~~G~PLal~~~g 233 (1051)
+ ...+..++..++|.|+....+.
T Consensus 187 ~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1236678999999998765443
No 173
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.47 E-value=0.0017 Score=80.49 Aligned_cols=174 Identities=18% Similarity=0.214 Sum_probs=93.1
Q ss_pred CCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhc-
Q 048831 24 VKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEK- 91 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~- 91 (1051)
.+++.|.+..++++.+.+.. +-...+.|.|+|++|+|||++|+++++.....| +..+..+....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~----i~i~~~~i~~~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF----ISINGPEIMSKY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE----EEEecHHHhccc
Confidence 35688999999998877632 112346789999999999999999998765432 22222111110
Q ss_pred CCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-------------HHHHHhcCCCCC-C
Q 048831 92 EGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE-------------QLQSLAGKRDWF-G 157 (1051)
Q Consensus 92 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~-~ 157 (1051)
.+. ........+.......+.+|+||+++... ....+...+... .
T Consensus 253 ~g~---------------------~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~ 311 (733)
T TIGR01243 253 YGE---------------------SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG 311 (733)
T ss_pred ccH---------------------HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc
Confidence 000 00111122222334566789999985421 122333322211 2
Q ss_pred CCCEEEE-EeCChh-hhHhh----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch
Q 048831 158 LGSRILI-TTRDKQ-LLVAH----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL 227 (1051)
Q Consensus 158 ~gs~Iii-TTR~~~-~~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 227 (1051)
.+..++| ||.... +.... ..+. .+.+...+.++..+++..+.-...... ......+++.+.|.--
T Consensus 312 ~~~vivI~atn~~~~ld~al~r~gRfd~--~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 312 RGRVIVIGATNRPDALDPALRRPGRFDR--EIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFVG 382 (733)
T ss_pred CCCEEEEeecCChhhcCHHHhCchhccE--EEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCCH
Confidence 3334454 454332 11111 1222 688888888888888875542211111 1224567777777543
No 174
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.0068 Score=61.70 Aligned_cols=205 Identities=16% Similarity=0.150 Sum_probs=106.9
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHH
Q 048831 22 KTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQ 101 (1051)
Q Consensus 22 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (1051)
..+..+++...+.+.|..+-..-+.+-+++.++|.-|.|||++.+++....... +..+.+..-... ....+...
T Consensus 25 ~~~~~~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d-~~~~v~i~~~~~-----s~~~~~~a 98 (269)
T COG3267 25 IQPGLDYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNED-QVAVVVIDKPTL-----SDATLLEA 98 (269)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCC-ceEEEEecCcch-----hHHHHHHH
Confidence 344445555555554443322222344699999999999999999665544322 122212111111 11344555
Q ss_pred HHHHHhccCCCccccchhhHHHHHHh-----hCCCe-EEEEEeCCCCH--HHHHHHhc--CCC-CCCCCCEEEEEeCChh
Q 048831 102 LLSNLLKLGDISIWHVDDGINIIGSR-----LRQQK-VLLVIDDVADV--EQLQSLAG--KRD-WFGLGSRILITTRDKQ 170 (1051)
Q Consensus 102 ll~~l~~~~~~~~~~~~~~~~~i~~~-----l~~k~-~LlVlDdv~~~--~~~~~l~~--~~~-~~~~gs~IiiTTR~~~ 170 (1051)
+...+..... .........+.+. -+++| +.+++||.... +.++.+.- ... ....--+|+..-..+-
T Consensus 99 i~~~l~~~p~---~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L 175 (269)
T COG3267 99 IVADLESQPK---VNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKL 175 (269)
T ss_pred HHHHhccCcc---chhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCccc
Confidence 5555543111 2222222222222 24667 99999998433 33444322 111 1112223443322210
Q ss_pred -------hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchH-HHHHHHHHHHhcCCCchHHHHHHHH
Q 048831 171 -------LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEE-YVELSKRVLNYASGLPLALKVLGSF 235 (1051)
Q Consensus 171 -------~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~-~~~~~~~i~~~~~G~PLal~~~g~~ 235 (1051)
+...........|++.|++.++...++.++..+...+.+- ..+....|.....|.|.++..++..
T Consensus 176 ~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 176 RPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred chhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 0111111111139999999999999988876544443332 2356678888999999999877643
No 175
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.44 E-value=0.0026 Score=73.54 Aligned_cols=176 Identities=18% Similarity=0.153 Sum_probs=90.5
Q ss_pred CCCccccchhHHHHHHHHh---cC-----CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhc-CC
Q 048831 23 TVKELVGIESRLEKLRFLM---GT-----GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEK-EG 93 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L---~~-----~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~-~~ 93 (1051)
...++.|.+...+.+.+.. .. +-...+-|.++|++|+|||.+|+++++.+.-.| +..+....... .+
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vG 301 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVG 301 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccC
Confidence 3456778776555554321 11 113456799999999999999999998765432 22222211110 00
Q ss_pred CHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHHH--------------HHHHhcCCCCCCCC
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVEQ--------------LQSLAGKRDWFGLG 159 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~--------------~~~l~~~~~~~~~g 159 (1051)
.... .....+...-...+.+|++|+++..-. +..+...+.....+
T Consensus 302 ese~---------------------~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~ 360 (489)
T CHL00195 302 ESES---------------------RMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSP 360 (489)
T ss_pred hHHH---------------------HHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCc
Confidence 0001 111111111234788999999864210 11122111111233
Q ss_pred CEEEEEeCChhhhHh-----hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCc
Q 048831 160 SRILITTRDKQLLVA-----HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLP 226 (1051)
Q Consensus 160 s~IiiTTR~~~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 226 (1051)
.-||.||........ ..++. .+.+...+.++-.++|..+..+...... .....+.+++.+.|.-
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~--~i~v~lP~~~eR~~Il~~~l~~~~~~~~-~~~dl~~La~~T~GfS 429 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDE--IFFLDLPSLEEREKIFKIHLQKFRPKSW-KKYDIKKLSKLSNKFS 429 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCe--EEEeCCcCHHHHHHHHHHHHhhcCCCcc-cccCHHHHHhhcCCCC
Confidence 345567765432221 13444 7889999999999999877644321110 0112345555665543
No 176
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0014 Score=72.72 Aligned_cols=163 Identities=12% Similarity=0.044 Sum_probs=86.0
Q ss_pred Ccccc-chhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc--cce-EEEe-ehhhhhh--cCCCHHH
Q 048831 25 KELVG-IESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF--YAS-SFLA-DVRERFE--KEGSVIS 97 (1051)
Q Consensus 25 ~~~vG-r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f--~~~-~~~~-~~~~~~~--~~~~~~~ 97 (1051)
..++| .+.-++.+...+..+ .-.+...++|+.|+||||+|+.++..+-..- ... +-.+ .++.... .+++ ..
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~-~~ 82 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV-HL 82 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EE
Confidence 34677 566667777777643 2346789999999999999999988653211 000 0000 0000000 0000 00
Q ss_pred HHHHHHHHHhccCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-
Q 048831 98 LQKQLLSNLLKLGDISIWHVDDGINIIGSR----LRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQ- 170 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~- 170 (1051)
+. .+......++..+.+... ..+.+=++|+|+++.. +....|+..+..-.+++.+|++|.+..
T Consensus 83 --------i~--~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 83 --------VA--PDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred --------ec--cccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 00 000000111111111111 1234446889998654 345566666655566778887876643
Q ss_pred hhHhhCCCCcceEEcCCCChhHHHHHHHHh
Q 048831 171 LLVAHEVDEEHILNLDVLNDDEALQLFSMK 200 (1051)
Q Consensus 171 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 200 (1051)
+.... ......+++.+++.++..+.+...
T Consensus 153 ll~TI-rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 153 ILPTI-LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CcHHH-HhhceeeeCCCCCHHHHHHHHHHc
Confidence 22211 112237999999999998888653
No 177
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0033 Score=68.55 Aligned_cols=177 Identities=12% Similarity=0.063 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc---ceEEEe-ehhhhh--hcCCCHHHHHHHHHHHH
Q 048831 33 RLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY---ASSFLA-DVRERF--EKEGSVISLQKQLLSNL 106 (1051)
Q Consensus 33 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~-~~~~~~--~~~~~~~~l~~~ll~~l 106 (1051)
..+.+.+.+..+ .-.....++|+.|+||+++|++++..+--.-. ..|-.+ .++... ..+++ ..+
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i-------- 79 (325)
T PRK06871 10 TYQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDF-HIL-------- 79 (325)
T ss_pred HHHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEE--------
Confidence 345566666543 23468889999999999999999985432110 011000 000000 00010 000
Q ss_pred hccCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhHhhCCC
Q 048831 107 LKLGDISIWHVDDGINIIGSRL-----RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQ-LLVAHEVD 178 (1051)
Q Consensus 107 ~~~~~~~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~ 178 (1051)
....+ ....+++.. .+.+.+ .+++=++|+|+++.. .....|+..+..-.+++.+|++|.+.. +..... .
T Consensus 80 ~p~~~-~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~-S 156 (325)
T PRK06871 80 EPIDN-KDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY-S 156 (325)
T ss_pred ccccC-CCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH-h
Confidence 00000 000111111 222222 245557889999765 345666666655566777777777653 332211 1
Q ss_pred CcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 179 EEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 179 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.-..+.+.+++.+++.+.+..... . +. ..+...++.++|.|+..
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~---~--~~--~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSS---A--EI--SEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhc---c--Ch--HHHHHHHHHcCCCHHHH
Confidence 123799999999999998876541 1 11 23556788999999644
No 178
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.38 E-value=0.0049 Score=66.70 Aligned_cols=154 Identities=20% Similarity=0.246 Sum_probs=81.3
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhc-CCCHHHHHHHHHHHHhccCCCccccchhhHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEK-EGSVISLQKQLLSNLLKLGDISIWHVDDGINII 124 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 124 (1051)
..++.++|||++|.|||.+|++++..+...| +..+..+...+ .|-..+..+++..... ...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A~--------------~~a 207 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREAA--------------DII 207 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHHH--------------HHh
Confidence 4568999999999999999999999876543 33333332211 1222233333322211 000
Q ss_pred HHhhCCCeEEEEEeCCCCH------------HHH--HHHhcCCC----------C----CCCCCEEEEEeCChhhhHhh-
Q 048831 125 GSRLRQQKVLLVIDDVADV------------EQL--QSLAGKRD----------W----FGLGSRILITTRDKQLLVAH- 175 (1051)
Q Consensus 125 ~~~l~~k~~LlVlDdv~~~------------~~~--~~l~~~~~----------~----~~~gs~IiiTTR~~~~~~~~- 175 (1051)
+ -++++.+|++||++.. .++ ..|+.... | ..++..||+||.+.......
T Consensus 208 ~--~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL 285 (413)
T PLN00020 208 K--KKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL 285 (413)
T ss_pred h--ccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence 0 1468899999998521 111 12322110 1 23456678888766543222
Q ss_pred ----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch
Q 048831 176 ----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL 227 (1051)
Q Consensus 176 ----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 227 (1051)
.++. .| ..-+.++-.+++..+.-+...+. .-..++++...|=|+
T Consensus 286 lRpGRfDk--~i--~lPd~e~R~eIL~~~~r~~~l~~----~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 286 IRDGRMEK--FY--WAPTREDRIGVVHGIFRDDGVSR----EDVVKLVDTFPGQPL 333 (413)
T ss_pred cCCCCCCc--ee--CCCCHHHHHHHHHHHhccCCCCH----HHHHHHHHcCCCCCc
Confidence 1233 33 34566677777765543322221 334456666666554
No 179
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.38 E-value=0.00019 Score=52.53 Aligned_cols=40 Identities=30% Similarity=0.481 Sum_probs=34.2
Q ss_pred CCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceecc
Q 048831 708 CSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLP 749 (1051)
Q Consensus 708 ~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 749 (1051)
++|++|++++|++.+ +|..++++++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCc
Confidence 479999999999975 7777999999999999999999876
No 180
>PRK08181 transposase; Validated
Probab=97.38 E-value=0.00085 Score=71.22 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=27.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
.-+.|+|++|+|||.||.++.+....+...+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45999999999999999999987765544445543
No 181
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.36 E-value=0.00028 Score=77.59 Aligned_cols=93 Identities=14% Similarity=0.087 Sum_probs=57.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcc-ccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCC-Ccccc----chhhH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHE-FYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGD-ISIWH----VDDGI 121 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~~~~~----~~~~~ 121 (1051)
-+.++|+|++|.|||||++.+++.+... |+..+|+..+.+.. .-+.++++.++..+....- ..... .....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~---~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCC---ccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 4679999999999999999999987665 88888887654421 1236677777544321111 11100 01111
Q ss_pred HHHHH-hhCCCeEEEEEeCCCCH
Q 048831 122 NIIGS-RLRQQKVLLVIDDVADV 143 (1051)
Q Consensus 122 ~~i~~-~l~~k~~LlVlDdv~~~ 143 (1051)
+..+. +-++++++|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 11111 13579999999999654
No 182
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.36 E-value=0.0017 Score=74.33 Aligned_cols=191 Identities=19% Similarity=0.217 Sum_probs=108.1
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc----ccce--EEEeehhhhhhcCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE----FYAS--SFLADVRERFEKEG 93 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~----f~~~--~~~~~~~~~~~~~~ 93 (1051)
.|....++||.+.-.+.|...+..+. -.......|+-|+||||+|+-++..+--. .+.+ |..+ .. .....
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~-I~~g~ 86 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KE-INEGS 86 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--Hh-hhcCC
Confidence 35556788999999999998887653 24567889999999999999999753211 1111 1110 11 00000
Q ss_pred CHHHHHHHHHHHHhccCCCccccchhhHHHHHHhh----CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL----RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTR 167 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 167 (1051)
. .++ ......+-..+++..+.+.+.. +++-=+.|+|+|... ..+..|+..+..-.+....|..|+
T Consensus 87 ~-~Dv--------iEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 87 L-IDV--------IEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred c-ccc--------hhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 0 000 0000000111222222222221 344458889999654 458888887765555666676666
Q ss_pred ChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCC
Q 048831 168 DKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGL 225 (1051)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 225 (1051)
+.+-....-....+.|.++.++.++....+...+-......+ .+...-|++..+|-
T Consensus 158 e~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e--~~aL~~ia~~a~Gs 213 (515)
T COG2812 158 EPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE--EDALSLIARAAEGS 213 (515)
T ss_pred CcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCC
Confidence 654222222223347999999999998888877644333322 34555666666663
No 183
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.0063 Score=66.21 Aligned_cols=178 Identities=12% Similarity=0.062 Sum_probs=94.9
Q ss_pred HHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc--ceEEEe-ehhhhh--hcCCCHHHHHHHHHHHHh
Q 048831 33 RLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY--ASSFLA-DVRERF--EKEGSVISLQKQLLSNLL 107 (1051)
Q Consensus 33 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~-~~~~~~--~~~~~~~~l~~~ll~~l~ 107 (1051)
..+++.+.+..+ .-...+.+.|+.|+||+++|+.++..+--.-. ..|-.+ .++... ..+++ .. +.
T Consensus 11 ~~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~-~~--------i~ 80 (319)
T PRK06090 11 VWQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL-HV--------IK 80 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE-EE--------Ee
Confidence 345566666543 23468999999999999999999875421100 000000 000000 00000 00 00
Q ss_pred ccCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhHhhCCCC
Q 048831 108 KLGDISIWHVDDGINIIGSRL-----RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDK-QLLVAHEVDE 179 (1051)
Q Consensus 108 ~~~~~~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~ 179 (1051)
.........+++. +.+.+.+ .+++=++|+|+++.. .....++..+..-.+++.+|++|.+. .+..... ..
T Consensus 81 p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~-SR 158 (319)
T PRK06090 81 PEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV-SR 158 (319)
T ss_pred cCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH-hc
Confidence 0000000111111 1222222 234447888999765 34566666665555677777776664 3333222 12
Q ss_pred cceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 180 EHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 180 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
-+.+.+.+++.+++.+.+.... .. .+..+++.++|.|+....+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~----~~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQG----IT------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHcC----Cc------hHHHHHHHcCCCHHHHHHH
Confidence 2379999999999999886532 11 1346789999999876554
No 184
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.30 E-value=0.0043 Score=76.98 Aligned_cols=172 Identities=15% Similarity=0.196 Sum_probs=92.6
Q ss_pred CccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCC
Q 048831 25 KELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEG 93 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 93 (1051)
.++.|.+...++|.+.+.. +-...+-|.++|++|+|||++|+++++.....| +.....+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~------ 522 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPE------ 522 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHH------
Confidence 4577888777777666531 112345689999999999999999999765433 2221111
Q ss_pred CHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH--------------HHHHHhcCCCCC--C
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE--------------QLQSLAGKRDWF--G 157 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~~--~ 157 (1051)
+++... + .........+...-+..+.+|++|+++... ....++..+... .
T Consensus 523 --------l~~~~v-G-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 523 --------ILSKWV-G-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred --------Hhhccc-C-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 111100 0 000111112222224567899999986421 123333333221 2
Q ss_pred CCCEEEEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCC-chHHHHHHHHHHHhcCCCc
Q 048831 158 LGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQP-VEEYVELSKRVLNYASGLP 226 (1051)
Q Consensus 158 ~gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 226 (1051)
.+..||.||......... ..+. .+.+...+.++-.++|..+..+.... ..+ ...+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~--~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDR--LILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccce--EEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 334456666555433222 2333 78999999999999987665322211 112 345556666644
No 185
>PRK10536 hypothetical protein; Provisional
Probab=97.29 E-value=0.0012 Score=68.38 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=39.2
Q ss_pred CccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHH-H-hccccceE
Q 048831 25 KELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDL-I-SHEFYASS 80 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~ 80 (1051)
..+.+|......+..++.. ..+|.+.|++|+|||+||.+++.. + ...|...+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 4567788888888887754 248999999999999999998874 3 34444333
No 186
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.29 E-value=0.0016 Score=68.08 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 34 LEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 34 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
+..+.+...........+.++|.+|+|||+||.++++.+......++++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3344444433222345789999999999999999999876654444444
No 187
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.0032 Score=69.43 Aligned_cols=180 Identities=15% Similarity=0.070 Sum_probs=95.8
Q ss_pred hHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc--c-cceEEEe-ehhhhh--hcCCCHHHHHHHHHHH
Q 048831 32 SRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE--F-YASSFLA-DVRERF--EKEGSVISLQKQLLSN 105 (1051)
Q Consensus 32 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f-~~~~~~~-~~~~~~--~~~~~~~~l~~~ll~~ 105 (1051)
...+++.+.+..+ .-...+.++|+.|+||+++|.+++..+--. - ...|=.+ .++... ..+++ ..
T Consensus 9 ~~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~-------- 78 (334)
T PRK07993 9 PDYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YT-------- 78 (334)
T ss_pred HHHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EE--------
Confidence 3455666666543 234788999999999999999998855221 0 0001000 000000 00000 00
Q ss_pred HhccCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhHhhCC
Q 048831 106 LLKLGDISIWHVDDGINIIGSRL-----RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQ-LLVAHEV 177 (1051)
Q Consensus 106 l~~~~~~~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~ 177 (1051)
+..........+++.. .+.+.+ .+++=++|+|+++.. .....|+..+..-.+++.+|++|.+.. +......
T Consensus 79 i~p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 79 LTPEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred EecccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 0000000001111111 222222 245568889998765 345566666555456777777776643 3322111
Q ss_pred CCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHH
Q 048831 178 DEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALK 230 (1051)
Q Consensus 178 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 230 (1051)
. -+.+.+.+++.+++.+.+.... ..+ .+.+..+++.++|.|....
T Consensus 158 R-Cq~~~~~~~~~~~~~~~L~~~~---~~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 158 R-CRLHYLAPPPEQYALTWLSREV---TMS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred c-cccccCCCCCHHHHHHHHHHcc---CCC----HHHHHHHHHHcCCCHHHHH
Confidence 1 1268999999999988886532 111 1336688999999996543
No 188
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.25 E-value=0.017 Score=64.01 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=113.5
Q ss_pred chhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHH-HHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHh-
Q 048831 30 IESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLA-RVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLL- 107 (1051)
Q Consensus 30 r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA-~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~- 107 (1051)
|.+.+++|..||....+ .+|.|.||-|.||+.|+ .++.+.. +. +.+.++.......+. ....+.++.+++
T Consensus 1 R~e~~~~L~~wL~e~~~--TFIvV~GPrGSGK~elV~d~~L~~r----~~-vL~IDC~~i~~ar~D-~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN--TFIVVQGPRGSGKRELVMDHVLKDR----KN-VLVIDCDQIVKARGD-AAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCCC--eEEEEECCCCCCccHHHHHHHHhCC----CC-EEEEEChHhhhccCh-HHHHHHHHHhcCC
Confidence 56788999999986543 58999999999999999 6655432 12 333344443333322 233333333322
Q ss_pred ------------------c---cCCCcc-ccchh-hH-------HHHHH-------------------hhC---CCeEEE
Q 048831 108 ------------------K---LGDISI-WHVDD-GI-------NIIGS-------------------RLR---QQKVLL 135 (1051)
Q Consensus 108 ------------------~---~~~~~~-~~~~~-~~-------~~i~~-------------------~l~---~k~~Ll 135 (1051)
+ +.+... .+.+. .. ..+++ +++ .+|-+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 0 101110 01111 11 11111 011 135689
Q ss_pred EEeCCCCH-----------HHHHHHhcCCCCCCCCCEEEEEeCChhhhHh----hCCCCcceEEcCCCChhHHHHHHHHh
Q 048831 136 VIDDVADV-----------EQLQSLAGKRDWFGLGSRILITTRDKQLLVA----HEVDEEHILNLDVLNDDEALQLFSMK 200 (1051)
Q Consensus 136 VlDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~ 200 (1051)
|+|+.... .+|...+.. .+=.+||++|-+....+. ......+.+.+...+.+-|.++...+
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 99998321 234443332 345689999988655443 22223347999999999999999988
Q ss_pred hhcCCCC------------------chHHHHHHHHHHHhcCCCchHHHHHHHHhcC
Q 048831 201 AFKSHQP------------------VEEYVELSKRVLNYASGLPLALKVLGSFLIG 238 (1051)
Q Consensus 201 a~~~~~~------------------~~~~~~~~~~i~~~~~G~PLal~~~g~~L~~ 238 (1051)
.-..... ......-....++..||--.=|..+++.++.
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 6432110 0123445667888899999999999888874
No 189
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.25 E-value=0.0075 Score=63.83 Aligned_cols=202 Identities=16% Similarity=0.118 Sum_probs=107.3
Q ss_pred Cccccchh---HHHHHHHHhcCCC-CCeeEEEEEcCCcchHHHHHHHHHHHHhccccce-----EEEeehhhhhhcCCCH
Q 048831 25 KELVGIES---RLEKLRFLMGTGS-TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYAS-----SFLADVRERFEKEGSV 95 (1051)
Q Consensus 25 ~~~vGr~~---~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~-----~~~~~~~~~~~~~~~~ 95 (1051)
+.+||-.. -+++|..++.... ...+-+.|+|.+|+|||++++++.......++.. ++.... -...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~---P~~p~~- 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQM---PPEPDE- 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEec---CCCCCh-
Confidence 45666643 3445666666432 4557899999999999999999998655444321 222211 122233
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHhhCC-CeEEEEEeCCCCH-----HHHHHHhcCCCCCC---CCCEEEEEe
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQ-QKVLLVIDDVADV-----EQLQSLAGKRDWFG---LGSRILITT 166 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~-k~~LlVlDdv~~~-----~~~~~l~~~~~~~~---~gs~IiiTT 166 (1051)
..+...|+..+...... ..........+...++. +-=+||+|++.+. .+-..++..+...+ .=+-|.+-|
T Consensus 110 ~~~Y~~IL~~lgaP~~~-~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRP-RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred HHHHHHHHHHhCcccCC-CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 77888899988733222 22334444445555554 3348899999653 11112211111112 224455666
Q ss_pred CChhhhHhhC---CCCcceEEcCCCChhH-HHHHHHHhhh--cCCCC-chHHHHHHHHHHHhcCCCchHHHH
Q 048831 167 RDKQLLVAHE---VDEEHILNLDVLNDDE-ALQLFSMKAF--KSHQP-VEEYVELSKRVLNYASGLPLALKV 231 (1051)
Q Consensus 167 R~~~~~~~~~---~~~~~~~~l~~L~~~e-a~~Lf~~~a~--~~~~~-~~~~~~~~~~i~~~~~G~PLal~~ 231 (1051)
++..-+-... ......+.+..+..++ ...|+..... .-..+ .-...+++..|...++|+.--+..
T Consensus 189 ~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 189 REAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 5532211110 0111256666666554 4445433221 11111 123457899999999998744433
No 190
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.25 E-value=0.00052 Score=68.42 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=26.3
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
..-+.|+|..|+|||.||.++.+.+..+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 357999999999999999999987665444455554
No 191
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.00012 Score=74.92 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=33.7
Q ss_pred CCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCce
Q 048831 704 LSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFV 746 (1051)
Q Consensus 704 l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 746 (1051)
...++.+..|+|+.+++......+.+..+++|..|.++++.+.
T Consensus 220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 3445667788888888877666777888999999999888765
No 192
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.24 E-value=0.00016 Score=87.07 Aligned_cols=110 Identities=27% Similarity=0.318 Sum_probs=79.8
Q ss_pred cCceecEEeeeCCCCC-CcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCC-cccccccCCCCCCE
Q 048831 542 SLKCLRTLKLSGCSKL-KKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLV-RLPNSINGLKSLKT 619 (1051)
Q Consensus 542 ~l~~L~~L~Ls~c~~~-~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~ 619 (1051)
.||+|+.|.++|-... .++-....++++|..||+++++++.+ ..+++|++|+.|.+++-.... .--..+-+|++|+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 3788999988885442 33566678889999999999999988 778999999999998744322 11124667999999
Q ss_pred EeccCCCCCCcC------CcccCCCCCccEEEccCCCCc
Q 048831 620 LNLSGCCKLENV------PDTLGQVESLEELDISGTATR 652 (1051)
Q Consensus 620 L~L~~c~~l~~l------p~~l~~l~~L~~L~l~~~~~~ 652 (1051)
||+|.-...... -+.-..+|+|+.||.+++.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 999886554321 112234789999999988754
No 193
>PRK09183 transposase/IS protein; Provisional
Probab=97.22 E-value=0.001 Score=70.88 Aligned_cols=34 Identities=26% Similarity=0.191 Sum_probs=25.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
..+.|+|++|+|||+||.+++.........+.|+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 5688999999999999999987654433233343
No 194
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.22 E-value=0.00067 Score=65.15 Aligned_cols=28 Identities=39% Similarity=0.347 Sum_probs=24.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
+.+.|+|++|+||||+|++++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 5789999999999999999998776654
No 195
>PRK06526 transposase; Provisional
Probab=97.21 E-value=0.0021 Score=67.92 Aligned_cols=28 Identities=25% Similarity=0.115 Sum_probs=23.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
.+-+.|+|++|+|||+||.++......+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3568999999999999999998876544
No 196
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.12 E-value=0.0041 Score=77.30 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=38.9
Q ss_pred ccccchhHHHHHHHHhcC----CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 26 ELVGIESRLEKLRFLMGT----GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
..+|.+.-.+.|.+++.. +.....++.++|++|+|||++|+++++.+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 477888888888776542 122335899999999999999999999876544
No 197
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.10 E-value=9.7e-05 Score=74.51 Aligned_cols=165 Identities=21% Similarity=0.280 Sum_probs=83.7
Q ss_pred hCCCCCCCEEEecCccCc-----ccCccccCCCCCCEEecCCCCC----------CCcccccccCCCCCCEEeccCCCCC
Q 048831 564 VASMEDLSELYLDGTYIT-----EVPSSIELLTGLELLNLNDCKN----------LVRLPNSINGLKSLKTLNLSGCCKL 628 (1051)
Q Consensus 564 ~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~----------l~~lp~~i~~L~~L~~L~L~~c~~l 628 (1051)
+..+..+..++|+||.|. .+...|.+-.+|+..+++.--. +..+...+-+++.|++.+|+.|..-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344556666666666654 2333344555666665554210 1112233456677777777777665
Q ss_pred CcCCcc----cCCCCCccEEEccCCCCcCCCc-----ccc---------cccCCcEEEccCCCCCCCCCcccCCcccccc
Q 048831 629 ENVPDT----LGQVESLEELDISGTATRRPPS-----SIF---------LMKNLKTLSFSGCNGPPSTASCHLNLPFNLM 690 (1051)
Q Consensus 629 ~~lp~~----l~~l~~L~~L~l~~~~~~~~~~-----~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 690 (1051)
...|+. +.+-+.|.+|.+++|++..+.. .+. +-|.|++.....|+.-.-..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~----------- 174 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK----------- 174 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH-----------
Confidence 555543 3445667778887777654421 111 23556666655554321100
Q ss_pred ccCCCCccccCCCCCCCCCCCEEeccCCCCCCcccc----ccccCCCcCcEEeccCCCce
Q 048831 691 RKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAIL----SDICNLHSLKELYLSGNNFV 746 (1051)
Q Consensus 691 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~----~~l~~l~~L~~L~L~~n~l~ 746 (1051)
......+..-..|+.+.+..|.+...++. ..+..+.+|+.|+|..|-|+
T Consensus 175 -------~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 175 -------ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred -------HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 00001122224567777777766533221 12334567777777777665
No 198
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.10 E-value=0.0029 Score=70.94 Aligned_cols=47 Identities=26% Similarity=0.289 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 24 VKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..++++.+..++.+...|... +.|.++|++|+|||++|+++++.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345778888899888888643 56888999999999999999987754
No 199
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.09 E-value=0.005 Score=64.78 Aligned_cols=188 Identities=18% Similarity=0.178 Sum_probs=103.4
Q ss_pred HHHHHHHhhccCCCCCCCccccchhHHHHHHHHhcCC--CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeeh
Q 048831 8 EIVNVISSKIHTEPKTVKELVGIESRLEKLRFLMGTG--STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADV 85 (1051)
Q Consensus 8 ~i~~~i~~~l~~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~ 85 (1051)
.|...+..+++. +-..++|-+++...+.+++... .++..-|.|.|+.|.|||+|......+ .+.+.....++..
T Consensus 10 siqr~l~~rl~~---~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~L 85 (408)
T KOG2228|consen 10 SIQRILRERLCG---PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRL 85 (408)
T ss_pred HHHHHHHHHhcC---CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEE
Confidence 344555566654 3456999999999998888642 244567889999999999998777765 3445444454444
Q ss_pred hhhhhc--CCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhC------CCeEEEEEeCCCCHH----H--HHHHhc
Q 048831 86 RERFEK--EGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLR------QQKVLLVIDDVADVE----Q--LQSLAG 151 (1051)
Q Consensus 86 ~~~~~~--~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~------~k~~LlVlDdv~~~~----~--~~~l~~ 151 (1051)
.+.... ..+ ..+..++..++... .....+..+....+.+.|+ +-++++|+|.+|-.. | +-.+..
T Consensus 86 ng~~~~dk~al-~~I~rql~~e~~~~-~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfD 163 (408)
T KOG2228|consen 86 NGELQTDKIAL-KGITRQLALELNRI-VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFD 163 (408)
T ss_pred CccchhhHHHH-HHHHHHHHHHHhhh-heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHH
Confidence 332211 111 34444444444322 2222333344444444443 346999999886432 1 112211
Q ss_pred C-CCCCCCCCEEEEEeCChhhhHh-----hCCCCcceEEcCCCChhHHHHHHHHhh
Q 048831 152 K-RDWFGLGSRILITTRDKQLLVA-----HEVDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 152 ~-~~~~~~gs~IiiTTR~~~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
. -....|=+-|-+|||-...... .......++-++.++.++-..+++...
T Consensus 164 isqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 1 1112355667789997633211 112222355566666666666665443
No 200
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.007 Score=68.46 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=85.9
Q ss_pred CCccccchhHHHHHHHHhcCC----------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCC
Q 048831 24 VKELVGIESRLEKLRFLMGTG----------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEG 93 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 93 (1051)
..++=|.++.+.++.+++..- -...|=|.++|++|.|||.||++++....-.|-. ...
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~----isA-------- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLS----ISA-------- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEe----ecc--------
Confidence 456789999999988876531 1235779999999999999999999876543311 111
Q ss_pred CHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH--------H-----HHHHhcCCCCCC---
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE--------Q-----LQSLAGKRDWFG--- 157 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~--------~-----~~~l~~~~~~~~--- 157 (1051)
-++.+.+. ..+.....+...+.-..-++++++|+++... . ...|+..+....
T Consensus 257 ------peivSGvS------GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~ 324 (802)
T KOG0733|consen 257 ------PEIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK 324 (802)
T ss_pred ------hhhhcccC------cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 11222211 1112223333344445688999999996421 1 222332222111
Q ss_pred -CCCEEE-E--EeCChhhhHhhC----CCCcceEEcCCCChhHHHHHHHHhhh
Q 048831 158 -LGSRIL-I--TTRDKQLLVAHE----VDEEHILNLDVLNDDEALQLFSMKAF 202 (1051)
Q Consensus 158 -~gs~Ii-i--TTR~~~~~~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~ 202 (1051)
.|-.|| | |+|...+-.... ++. -|.+.--++.+-.+++...+-
T Consensus 325 ~~g~~VlVIgATnRPDslDpaLRRaGRFdr--EI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 325 TKGDPVLVIGATNRPDSLDPALRRAGRFDR--EICLGVPSETAREEILRIICR 375 (802)
T ss_pred cCCCCeEEEecCCCCcccCHHHhccccccc--eeeecCCchHHHHHHHHHHHh
Confidence 133333 2 556554433322 333 577777777766666665553
No 201
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.08 E-value=0.0085 Score=60.55 Aligned_cols=173 Identities=18% Similarity=0.255 Sum_probs=97.9
Q ss_pred CCCccccchhHHH---HHHHHhcCC----CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCH
Q 048831 23 TVKELVGIESRLE---KLRFLMGTG----STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSV 95 (1051)
Q Consensus 23 ~~~~~vGr~~~~~---~l~~~L~~~----~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 95 (1051)
..++.||.+.... -|.+.|... .-..+.|..+|++|.|||.+|+++++..+-.| .....
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----l~vka---------- 184 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----LLVKA---------- 184 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----EEech----------
Confidence 3467899875554 356666543 23478999999999999999999998654322 11111
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHhh-CCCeEEEEEeCCCCH--------------HHHHHHhcCCCCC--CC
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL-RQQKVLLVIDDVADV--------------EQLQSLAGKRDWF--GL 158 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l-~~k~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~ 158 (1051)
.+-|...++ +....+..+.++. +.-++++.+|.++.. +...+|+..+... +.
T Consensus 185 ---t~liGehVG--------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene 253 (368)
T COG1223 185 ---TELIGEHVG--------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE 253 (368)
T ss_pred ---HHHHHHHhh--------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC
Confidence 111111111 1111222222222 347899999987542 2245566555432 24
Q ss_pred CCEEEEEeCChhhhHhh---CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCC
Q 048831 159 GSRILITTRDKQLLVAH---EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGL 225 (1051)
Q Consensus 159 gs~IiiTTR~~~~~~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 225 (1051)
|..-|-.|....++... .+.. -++..--+++|-.+++..++-.-.-+.+.. .+.++++++|.
T Consensus 254 GVvtIaaTN~p~~LD~aiRsRFEe--EIEF~LP~~eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~ 318 (368)
T COG1223 254 GVVTIAATNRPELLDPAIRSRFEE--EIEFKLPNDEERLEILEYYAKKFPLPVDAD---LRYLAAKTKGM 318 (368)
T ss_pred ceEEEeecCChhhcCHHHHhhhhh--eeeeeCCChHHHHHHHHHHHHhCCCccccC---HHHHHHHhCCC
Confidence 44445555554443321 2233 678888899999999999885444333221 34555666653
No 202
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.08 E-value=0.0011 Score=72.60 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=28.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
..+.++|..|+|||+||.++++.+..+...++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67999999999999999999998766544555554
No 203
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.06 E-value=0.019 Score=61.47 Aligned_cols=37 Identities=27% Similarity=0.235 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 33 RLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 33 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
-++++...+..+ +-|.|.|++|+|||++|++++....
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 344455555432 4577999999999999999998653
No 204
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0043 Score=71.85 Aligned_cols=158 Identities=18% Similarity=0.277 Sum_probs=89.0
Q ss_pred ccccchhHHHHHHHHhcCC----CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHH
Q 048831 26 ELVGIESRLEKLRFLMGTG----STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQ 101 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~~----~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (1051)
+-+|.++-.++|.++|.-. .-.-.+++++|++|+|||+|++.+++.+...|-. +-+-.++..++-.|-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~sLGGvrDEAEIRGH------- 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR-ISLGGVRDEAEIRGH------- 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE-EecCccccHHHhccc-------
Confidence 4788888888888887632 2234799999999999999999999988777632 222233333332222
Q ss_pred HHHHHhccCCCccc-cchhhHHHHHHhhCCCeEEEEEeCCCCHHH----------HHHHhcCCC-CCC--------CCCE
Q 048831 102 LLSNLLKLGDISIW-HVDDGINIIGSRLRQQKVLLVIDDVADVEQ----------LQSLAGKRD-WFG--------LGSR 161 (1051)
Q Consensus 102 ll~~l~~~~~~~~~-~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~----------~~~l~~~~~-~~~--------~gs~ 161 (1051)
...-+. -+...+..+++ .+.+.-|++||.+|.... ++.|-+... .|. .=|.
T Consensus 396 --------RRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 396 --------RRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred --------cccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 111011 11122222222 234566899999975421 222222110 000 0133
Q ss_pred E-EEEeCCh-h-hhHhhCCCCcceEEcCCCChhHHHHHHHHhh
Q 048831 162 I-LITTRDK-Q-LLVAHEVDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 162 I-iiTTR~~-~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
| .|||-+. . +.. .-.+.-.++++.+-+++|-+++-.++.
T Consensus 467 VmFiaTANsl~tIP~-PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPA-PLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCCh-HHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4 4555543 1 111 112333489999999999999888775
No 205
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0046 Score=70.90 Aligned_cols=133 Identities=18% Similarity=0.266 Sum_probs=74.8
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIG 125 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 125 (1051)
...+-|.++|++|.|||++|+++++.-...|-.+ .. .++++...+ +.+..+..+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv------kg------------pEL~sk~vG-------eSEr~ir~iF 520 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV------KG------------PELFSKYVG-------ESERAIREVF 520 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec------cC------------HHHHHHhcC-------chHHHHHHHH
Confidence 4568899999999999999999999776655321 11 011111110 0111111221
Q ss_pred Hhh-CCCeEEEEEeCCCCHH-------------HHHHHhcCCCCCCCCCEEEE---EeCChhhhHhh----CCCCcceEE
Q 048831 126 SRL-RQQKVLLVIDDVADVE-------------QLQSLAGKRDWFGLGSRILI---TTRDKQLLVAH----EVDEEHILN 184 (1051)
Q Consensus 126 ~~l-~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gs~Iii---TTR~~~~~~~~----~~~~~~~~~ 184 (1051)
+.- +-.+.+|.||.+|... -+..++..+.-......|+| |-|...+-... ..+. ++.
T Consensus 521 ~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~--iiy 598 (693)
T KOG0730|consen 521 RKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDR--IIY 598 (693)
T ss_pred HHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccce--eEe
Confidence 111 2355788888875432 14455555554444434433 34444332222 1344 788
Q ss_pred cCCCChhHHHHHHHHhhhcCC
Q 048831 185 LDVLNDDEALQLFSMKAFKSH 205 (1051)
Q Consensus 185 l~~L~~~ea~~Lf~~~a~~~~ 205 (1051)
+..-+.+...++|..++-+-.
T Consensus 599 VplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 599 VPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred ecCccHHHHHHHHHHHHhcCC
Confidence 888888889999998885433
No 206
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.99 E-value=0.0048 Score=72.89 Aligned_cols=52 Identities=31% Similarity=0.508 Sum_probs=40.9
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..|....+++|.+..++.+...+... ....|.|+|.+|+|||++|+.+++..
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34555678999999999998776433 23567899999999999999998743
No 207
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.96 E-value=0.00026 Score=85.24 Aligned_cols=79 Identities=20% Similarity=0.387 Sum_probs=47.5
Q ss_pred ceecEEeeeCCCCCCc-Cchh-hCCCCCCCEEEecCccCc--ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCE
Q 048831 544 KCLRTLKLSGCSKLKK-FPAI-VASMEDLSELYLDGTYIT--EVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKT 619 (1051)
Q Consensus 544 ~~L~~L~Ls~c~~~~~-~p~~-~~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 619 (1051)
.+|++|+++|...... .|.. -..+|+|+.|.+.+-.+. ++-....++++|..||++++. +..+ .+++.|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 4677777777544322 3333 344678888888776654 333445667777777777754 3333 45666666666
Q ss_pred EeccC
Q 048831 620 LNLSG 624 (1051)
Q Consensus 620 L~L~~ 624 (1051)
|.+.+
T Consensus 200 L~mrn 204 (699)
T KOG3665|consen 200 LSMRN 204 (699)
T ss_pred HhccC
Confidence 66654
No 208
>PRK06921 hypothetical protein; Provisional
Probab=96.94 E-value=0.0013 Score=70.11 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=28.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcc-ccceEEEe
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHE-FYASSFLA 83 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 83 (1051)
...+.++|..|+|||+||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4679999999999999999999987765 34445554
No 209
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.036 Score=61.04 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=58.3
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCC
Q 048831 130 QQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDK-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQ 206 (1051)
Q Consensus 130 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 206 (1051)
+++=++|+|+++.. .....|+..+..-.+++.+|++|.+. .+...... .-+.+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEecCCCHHHHHHHHHHcC----C
Confidence 34447888999754 44666766666556777776666554 33322211 12379999999999999987642 1
Q ss_pred CchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 207 PVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 207 ~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
+ + ...++..++|.|.....+
T Consensus 206 ~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C-h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999755444
No 210
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.91 E-value=0.0049 Score=67.07 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=28.9
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
..+-+.|+|..|+|||.||.++++.+..+-..+.|+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3467999999999999999999998775444444543
No 211
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.89 E-value=0.0081 Score=58.99 Aligned_cols=43 Identities=30% Similarity=0.350 Sum_probs=33.0
Q ss_pred cchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 29 GIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 29 Gr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
|.+...+.|..++..+ .-...+.++|+.|+||+++|.+++..+
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 5667777888887654 334678999999999999999999854
No 212
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.031 Score=62.42 Aligned_cols=123 Identities=18% Similarity=0.148 Sum_probs=73.2
Q ss_pred ccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc---------------------ceEEEee
Q 048831 26 ELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY---------------------ASSFLAD 84 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~~~~~~~ 84 (1051)
.++|-+....++..+..........+.++|+.|+||||+|.++++.+-.... ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 4677788888888887744333456999999999999999999987653321 111111
Q ss_pred hhhhhhcCC--CHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHHH--HHHHhcCCCCCCCCC
Q 048831 85 VRERFEKEG--SVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVEQ--LQSLAGKRDWFGLGS 160 (1051)
Q Consensus 85 ~~~~~~~~~--~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs 160 (1051)
.++... ...+..+++........ ..++.-++|+|+++.... ...+...........
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~-----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESP-----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCC-----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 011111 11222222222221000 035667899999987643 455655555556778
Q ss_pred EEEEEeCCh
Q 048831 161 RILITTRDK 169 (1051)
Q Consensus 161 ~IiiTTR~~ 169 (1051)
++|++|.+.
T Consensus 141 ~~il~~n~~ 149 (325)
T COG0470 141 RFILITNDP 149 (325)
T ss_pred EEEEEcCCh
Confidence 888888744
No 213
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.88 E-value=0.011 Score=59.38 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=41.7
Q ss_pred CCCccccchhHHHHHHHHhcC--CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccc
Q 048831 23 TVKELVGIESRLEKLRFLMGT--GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYA 78 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~ 78 (1051)
....++|.|...+.+.+-... .+-...-|.+||--|+|||+|++++.+.+.++.-.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 345689999888877554221 12234568899999999999999999998877654
No 214
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.87 E-value=0.004 Score=65.58 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=35.3
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRER 88 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 88 (1051)
-+.++|.|.+|+||||||+.++++++.+|+..+++..+.+.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer 109 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER 109 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC
Confidence 36789999999999999999999998888888887766554
No 215
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.014 Score=64.84 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=77.7
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIG 125 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 125 (1051)
.....|.+.|++|.|||+||.+++.. ..|+.+-.+. .-+.-|+-+... .........
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~sEsaK-----------------c~~i~k~F~ 592 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGLSESAK-----------------CAHIKKIFE 592 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCccHHHH-----------------HHHHHHHHH
Confidence 45678999999999999999999863 6787665543 111111100000 011122333
Q ss_pred HhhCCCeEEEEEeCCCCHHHH------------HHHhcCCCCCC-CCCE--EEEEeCChhhhHhhCCCC--cceEEcCCC
Q 048831 126 SRLRQQKVLLVIDDVADVEQL------------QSLAGKRDWFG-LGSR--ILITTRDKQLLVAHEVDE--EHILNLDVL 188 (1051)
Q Consensus 126 ~~l~~k~~LlVlDdv~~~~~~------------~~l~~~~~~~~-~gs~--IiiTTR~~~~~~~~~~~~--~~~~~l~~L 188 (1051)
+..+..--.||+||++..-+| +.|+..+.... +|-| |+-||....++..++... ...|.|..+
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 444566679999999765443 33322222222 3444 445777778887776321 127899999
Q ss_pred Ch-hHHHHHHHHh
Q 048831 189 ND-DEALQLFSMK 200 (1051)
Q Consensus 189 ~~-~ea~~Lf~~~ 200 (1051)
+. ++..+.+...
T Consensus 673 ~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 673 TTGEQLLEVLEEL 685 (744)
T ss_pred CchHHHHHHHHHc
Confidence 87 6777777654
No 216
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.031 Score=61.53 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=47.9
Q ss_pred CeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCc
Q 048831 131 QKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPV 208 (1051)
Q Consensus 131 k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 208 (1051)
+|+ +|+|+++.. .....++..+....++..+|++|.+.......-...-..+.+.+++.+++.+.+.... .+.
T Consensus 114 ~kV-~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~ 188 (325)
T PRK08699 114 LRV-ILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VAE 188 (325)
T ss_pred ceE-EEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CCc
Confidence 444 456887543 3333343333322346777778877542222111122378999999999998886542 111
Q ss_pred hHHHHHHHHHHHhcCCCchH
Q 048831 209 EEYVELSKRVLNYASGLPLA 228 (1051)
Q Consensus 209 ~~~~~~~~~i~~~~~G~PLa 228 (1051)
. . ..+..++|-|+.
T Consensus 189 ~---~---~~l~~~~g~p~~ 202 (325)
T PRK08699 189 P---E---ERLAFHSGAPLF 202 (325)
T ss_pred H---H---HHHHHhCCChhh
Confidence 1 1 113567898854
No 217
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.81 E-value=0.049 Score=60.76 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=50.0
Q ss_pred chhHHHHHHHHhcCCC-CCeeEEEEEcCCcchHHHHHHHHHHHHhcc--ccceEEEeehhhhhhcCCCHHHHHHHHHHHH
Q 048831 30 IESRLEKLRFLMGTGS-TDVRMIGIWGMGGLGKTTLARVVYDLISHE--FYASSFLADVRERFEKEGSVISLQKQLLSNL 106 (1051)
Q Consensus 30 r~~~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 106 (1051)
|+...+.|.+.+...+ ....+|+|.|.=|.||||+.+.+.+.+... -...+...+.+.......+...+..++..++
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 4556677878887643 567899999999999999999999988777 1222333333333332333344555554444
No 218
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.012 Score=61.47 Aligned_cols=36 Identities=25% Similarity=0.526 Sum_probs=28.5
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH----hccccceEEEe
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI----SHEFYASSFLA 83 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~----~~~f~~~~~~~ 83 (1051)
-|+|.++|++|.|||+|.+++++++ .++|.....+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 5899999999999999999999854 44555555543
No 219
>PRK04132 replication factor C small subunit; Provisional
Probab=96.78 E-value=0.017 Score=70.71 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=90.6
Q ss_pred EEc--CCcchHHHHHHHHHHHH-hccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhC
Q 048831 53 IWG--MGGLGKTTLARVVYDLI-SHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLR 129 (1051)
Q Consensus 53 I~G--~gGiGKTtLA~~v~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~ 129 (1051)
+.| |.++||||+|.++++++ .+.+...+.-.+.+. ..+ .+..+++.......... -.
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd---~rg--id~IR~iIk~~a~~~~~---------------~~ 628 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASD---ERG--INVIREKVKEFARTKPI---------------GG 628 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCC---ccc--HHHHHHHHHHHHhcCCc---------------CC
Confidence 447 88999999999999876 223333333333322 112 12223333322211000 01
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCC
Q 048831 130 QQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQ-LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQ 206 (1051)
Q Consensus 130 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 206 (1051)
.+.-++|+|+++.. .+...|...+.......++|++|.+.. +..... .....+++.+++.++..+.+.+.+-..+.
T Consensus 629 ~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr-SRC~~i~F~~ls~~~i~~~L~~I~~~Egi 707 (846)
T PRK04132 629 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ-SRCAIFRFRPLRDEDIAKRLRYIAENEGL 707 (846)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh-hhceEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 24569999999865 356666666655556778777776653 222211 12248999999999998888776543222
Q ss_pred CchHHHHHHHHHHHhcCCCchHHH
Q 048831 207 PVEEYVELSKRVLNYASGLPLALK 230 (1051)
Q Consensus 207 ~~~~~~~~~~~i~~~~~G~PLal~ 230 (1051)
.. ..+....|++.++|.+-.+.
T Consensus 708 ~i--~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 708 EL--TEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CC--CHHHHHHHHHHcCCCHHHHH
Confidence 21 23567899999999884443
No 220
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.78 E-value=0.017 Score=71.40 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=38.0
Q ss_pred CccccchhHHHHHHHHhcCC------C-CCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 25 KELVGIESRLEKLRFLMGTG------S-TDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~------~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..++|.+..++.+...+... . ....++.++|+.|+|||+||++++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 45789998888887776531 1 1234689999999999999999998773
No 221
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.78 E-value=0.0073 Score=74.32 Aligned_cols=51 Identities=16% Similarity=0.330 Sum_probs=40.2
Q ss_pred ccccchhHHHHHHHHhcC----CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 26 ELVGIESRLEKLRFLMGT----GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
..+|.++-.++|.+++.. +.....++.++|++|+||||+|+.++..+...|
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 388998888888887763 112346899999999999999999998766544
No 222
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.74 E-value=0.004 Score=59.99 Aligned_cols=119 Identities=14% Similarity=0.129 Sum_probs=61.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHh--c-cCCC--ccc-------c
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLL--K-LGDI--SIW-------H 116 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~-~~~~--~~~-------~ 116 (1051)
.+|-|++-.|.||||+|...+-+...+-..+.++.-+... ...+- ....+.+ ..+. . +... ... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE-~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGE-LKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCH-HHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4688888899999999999888766654455554433321 11222 2222222 0000 0 0000 000 1
Q ss_pred chhhHHHHHHhhCCC-eEEEEEeCCCCHH-----HHHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 117 VDDGINIIGSRLRQQ-KVLLVIDDVADVE-----QLQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 117 ~~~~~~~i~~~l~~k-~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
..+..+..++.++.. -=|+|||++-..- +.+.+...+....++..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 112233344445443 3499999984331 12222222223346779999999965
No 223
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.70 E-value=0.036 Score=57.37 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=28.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
-.++|.|..|.||||++..+.......|..+..+
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 3578999999999999999999999999555444
No 224
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.058 Score=64.24 Aligned_cols=178 Identities=19% Similarity=0.288 Sum_probs=103.6
Q ss_pred CCCccccchhHHHHHHHH---hcC-------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcC
Q 048831 23 TVKELVGIESRLEKLRFL---MGT-------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKE 92 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~---L~~-------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 92 (1051)
...++.|.++..++|.+. |.. +..-++=|.|+|++|+|||-||++++-...-- |+.....
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-----F~svSGS----- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSVSGS----- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-----eeeechH-----
Confidence 456788988776666555 433 22346779999999999999999999753222 2221111
Q ss_pred CCHHHHHHHHHHHHhccCCCccccchhhHHHH-HHhhCCCeEEEEEeCCCCH-----------------HHHHHHhcCCC
Q 048831 93 GSVISLQKQLLSNLLKLGDISIWHVDDGINII-GSRLRQQKVLLVIDDVADV-----------------EQLQSLAGKRD 154 (1051)
Q Consensus 93 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i-~~~l~~k~~LlVlDdv~~~-----------------~~~~~l~~~~~ 154 (1051)
++.+.+.... ...++.+ ...=...+..|.+|+++.. ..+.+++...+
T Consensus 379 --------EFvE~~~g~~-------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 379 --------EFVEMFVGVG-------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred --------HHHHHhcccc-------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 1112111000 0111111 1222346778888877532 22666666666
Q ss_pred CCCCCCEE--EEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch
Q 048831 155 WFGLGSRI--LITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL 227 (1051)
Q Consensus 155 ~~~~gs~I--iiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 227 (1051)
.+..+..| +-+|+..+++... .++. .+.++.-+.....++|.-++-+.... .+..++++ |+.++-|.+=
T Consensus 444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr--~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~g 519 (774)
T KOG0731|consen 444 GFETSKGVIVLAATNRPDILDPALLRPGRFDR--QIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSG 519 (774)
T ss_pred CCcCCCcEEEEeccCCccccCHHhcCCCcccc--ceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcH
Confidence 55544433 3355544443332 2333 78888889999999999888544433 34456666 8899999885
Q ss_pred HH
Q 048831 228 AL 229 (1051)
Q Consensus 228 al 229 (1051)
|-
T Consensus 520 ad 521 (774)
T KOG0731|consen 520 AD 521 (774)
T ss_pred HH
Confidence 43
No 225
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.031 Score=64.58 Aligned_cols=75 Identities=24% Similarity=0.288 Sum_probs=48.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR 127 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 127 (1051)
...|.|.|..|+|||+||+++++.+...-...+-++++.... ... +..+|+.+- ..+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~-~~~-~e~iQk~l~------------------~vfse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLD-GSS-LEKIQKFLN------------------NVFSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhcc-chh-HHHHHHHHH------------------HHHHHH
Confidence 357899999999999999999998875433333333333221 111 134443332 234455
Q ss_pred hCCCeEEEEEeCCCC
Q 048831 128 LRQQKVLLVIDDVAD 142 (1051)
Q Consensus 128 l~~k~~LlVlDdv~~ 142 (1051)
+...+-+|||||++.
T Consensus 491 ~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDC 505 (952)
T ss_pred HhhCCcEEEEcchhh
Confidence 677889999999853
No 226
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.01 Score=62.88 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=28.3
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
...-+.++|.+|+|||.||.++.+++. +....+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEE
Confidence 345789999999999999999999988 444444433
No 227
>PHA00729 NTP-binding motif containing protein
Probab=96.61 E-value=0.012 Score=60.01 Aligned_cols=27 Identities=33% Similarity=0.242 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+...|+|+|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446799999999999999999998754
No 228
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.013 Score=69.95 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=71.4
Q ss_pred CccccchhHHHHHHHHhcC-------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHH
Q 048831 25 KELVGIESRLEKLRFLMGT-------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~-------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
...+|.+..++.+.+.+.. ......+....|+.|+|||-||++++..+-+.=+.-+ -.++++..++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~ali-R~DMSEy~Ek------ 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALI-RIDMSEYMEK------ 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccce-eechHHHHHH------
Confidence 3589999888888776643 1234568888999999999999999987654322222 2345543332
Q ss_pred HHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeE-EEEEeCCCCH--HHHHHHhcCCC
Q 048831 98 LQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKV-LLVIDDVADV--EQLQSLAGKRD 154 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~-LlVlDdv~~~--~~~~~l~~~~~ 154 (1051)
.-.+.+.+.. +.-.-.++ -..+.+..++++| +|.||+|+.. +-..-++..+.
T Consensus 564 ---HsVSrLIGaP-PGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 564 ---HSVSRLIGAP-PGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred ---HHHHHHhCCC-CCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 2233443221 21111222 3356666777877 8889999754 33555555544
No 229
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.59 E-value=0.01 Score=73.89 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=38.5
Q ss_pred CccccchhHHHHHHHHhcC-------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 25 KELVGIESRLEKLRFLMGT-------GSTDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~-------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..++|.+.-++.+.+.+.. ......++.++|+.|+|||.+|++++..+-.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4588999888888777632 1123457899999999999999999987644
No 230
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.58 E-value=0.00037 Score=82.85 Aligned_cols=35 Identities=31% Similarity=0.601 Sum_probs=15.7
Q ss_pred CCccCEEEeeCCCCChh--hhhhhccCCCCcEEecCC
Q 048831 486 VPNLEVLDLKGCTSLRE--IHSSLLRHNKLILLNLKG 520 (1051)
Q Consensus 486 l~~L~~L~L~~c~~l~~--l~~si~~l~~L~~L~L~~ 520 (1051)
.++|+.|.+.+|..+.. +-......+.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 34444444444444443 223334444455555544
No 231
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.58 E-value=0.015 Score=58.73 Aligned_cols=129 Identities=20% Similarity=0.220 Sum_probs=57.7
Q ss_pred chhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHH-H-hccccceEEEeehhhhhhcCCCH-HHHH-------
Q 048831 30 IESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDL-I-SHEFYASSFLADVRERFEKEGSV-ISLQ------- 99 (1051)
Q Consensus 30 r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~~~~~~~~~~~~~~-~~l~------- 99 (1051)
+..+.+.....|. +..+|.+.|++|.|||.||.+.+-+ + ..+|+..++....-+..+.-|.+ -++.
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3444455555554 3468999999999999999887753 3 35566665554332211111110 0010
Q ss_pred HHHHHHHhccCCCccccchhhHHHHH---------HhhCCC---eEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEE
Q 048831 100 KQLLSNLLKLGDISIWHVDDGINIIG---------SRLRQQ---KVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILIT 165 (1051)
Q Consensus 100 ~~ll~~l~~~~~~~~~~~~~~~~~i~---------~~l~~k---~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiT 165 (1051)
.-+.+.+..-- ........+. ..++++ ..+||+|++.+. +++..+... .+.||+||++
T Consensus 81 ~p~~d~l~~~~-----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~ 152 (205)
T PF02562_consen 81 RPIYDALEELF-----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIIT 152 (205)
T ss_dssp HHHHHHHTTTS------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEE
T ss_pred HHHHHHHHHHh-----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEe
Confidence 11111111000 0111111221 234553 469999999654 567776554 5789999998
Q ss_pred eCChh
Q 048831 166 TRDKQ 170 (1051)
Q Consensus 166 TR~~~ 170 (1051)
=-..+
T Consensus 153 GD~~Q 157 (205)
T PF02562_consen 153 GDPSQ 157 (205)
T ss_dssp E----
T ss_pred cCcee
Confidence 76543
No 232
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.54 E-value=0.0047 Score=60.29 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=17.5
Q ss_pred CCCCCCCCEEeccCCCCCCccc--cccccCCCcCcEEeccC
Q 048831 704 LSGLCSLSKLDLSDCGLREGAI--LSDICNLHSLKELYLSG 742 (1051)
Q Consensus 704 l~~l~~L~~L~L~~~~l~~~~~--~~~l~~l~~L~~L~L~~ 742 (1051)
+..++.|++|.+-+|+.....- .--+..+|+|+.||..+
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 3445555555555554432111 01233455555555544
No 233
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.52 E-value=0.013 Score=68.41 Aligned_cols=61 Identities=30% Similarity=0.477 Sum_probs=46.4
Q ss_pred CCCCCCccccchhHHHHHHHHhcC---CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGT---GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
.|....+++.-.+.++++..||.. +....+++.++|++|+||||.++.+++.+. |+..-|.
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 345556777778899999999975 223457999999999999999999998753 4444453
No 234
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.015 Score=67.12 Aligned_cols=52 Identities=23% Similarity=0.465 Sum_probs=42.7
Q ss_pred CccccchhHHHHHHHHhcC----CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 25 KELVGIESRLEKLRFLMGT----GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
++-+|+++-.++|.+.+.- ++.+-++++.+|++|+|||.+|+.++..+-..|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 3478999888888888763 234458999999999999999999999877665
No 235
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0063 Score=72.67 Aligned_cols=154 Identities=14% Similarity=0.193 Sum_probs=86.3
Q ss_pred CCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc-cc-----ceEEEeehhhhhhcCCCHH
Q 048831 23 TVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE-FY-----ASSFLADVRERFEKEGSVI 96 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~ 96 (1051)
..+..+||+.|++++.+.|.....+-. .++|.+|+|||++|.-++.++... -+ ..++-.++..
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~--------- 236 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS--------- 236 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH---------
Confidence 345699999999999999987543333 368999999999999999876543 11 1122222111
Q ss_pred HHHHHHHHHHhccCCCccccchhhHHHH-HHhhCCCeEEEEEeCCCCH----------HHHHH-HhcCCCCCCCC-CEEE
Q 048831 97 SLQKQLLSNLLKLGDISIWHVDDGINII-GSRLRQQKVLLVIDDVADV----------EQLQS-LAGKRDWFGLG-SRIL 163 (1051)
Q Consensus 97 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i-~~~l~~k~~LlVlDdv~~~----------~~~~~-l~~~~~~~~~g-s~Ii 163 (1051)
+..+..... +.++..+.+ .+.-+..++.+.+|.+.+. .+..+ +.+.+ ..| -++|
T Consensus 237 ---------LvAGakyRG-eFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL---ARGeL~~I 303 (786)
T COG0542 237 ---------LVAGAKYRG-EFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL---ARGELRCI 303 (786)
T ss_pred ---------HhccccccC-cHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH---hcCCeEEE
Confidence 111111111 223333333 3333345899999987432 11222 33332 223 3445
Q ss_pred -EEeCChhhhHhhC-----CCCcceEEcCCCChhHHHHHHHHhh
Q 048831 164 -ITTRDKQLLVAHE-----VDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 164 -iTTR~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
.||-++ .-+... ....+.+.|...+.+++.++++...
T Consensus 304 GATT~~E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 304 GATTLDE-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred EeccHHH-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 455433 111110 1223479999999999999987543
No 236
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.52 E-value=0.03 Score=67.94 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=81.2
Q ss_pred CccccchhHHHHHHHHhcCC----------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCC
Q 048831 25 KELVGIESRLEKLRFLMGTG----------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGS 94 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 94 (1051)
.++.|.+...+++.+.+... ..-.+-|.|+|++|.|||++|+.++.+....| +........
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f----~~is~~~~~----- 222 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF----FTISGSDFV----- 222 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE----EEEehHHhH-----
Confidence 34667776666655544310 11134599999999999999999988765443 111111110
Q ss_pred HHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHHhcCCCCCC-
Q 048831 95 VISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE----------------QLQSLAGKRDWFG- 157 (1051)
Q Consensus 95 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~- 157 (1051)
. ... .. ........+....+..+.+|++|+++... .+..++..+..+.
T Consensus 223 -----~----~~~-g~-----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 223 -----E----MFV-GV-----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred -----H----hhh-cc-----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 0 000 00 00111122222234467899999986541 1233333332222
Q ss_pred -CCCEEEEEeCChhhhHhhCCC---CcceEEcCCCChhHHHHHHHHhhh
Q 048831 158 -LGSRILITTRDKQLLVAHEVD---EEHILNLDVLNDDEALQLFSMKAF 202 (1051)
Q Consensus 158 -~gs~IiiTTR~~~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a~ 202 (1051)
.+.-||.||.........-.. -.+.+.+...+.++-.+++..+..
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 233455577665433322111 123788888888888888887764
No 237
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.52 E-value=0.05 Score=55.83 Aligned_cols=214 Identities=16% Similarity=0.230 Sum_probs=116.9
Q ss_pred CCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc------cccceEEEeehhh-------
Q 048831 21 PKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH------EFYASSFLADVRE------- 87 (1051)
Q Consensus 21 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~------- 87 (1051)
|.....+.++++....+.++... ++.....++|+.|.||-|.+..+.+++-. +-+...|......
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~--~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistv 86 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSST--GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTV 86 (351)
T ss_pred cchhhhcccHHHHHHHHHHhccc--CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEe
Confidence 34445677888777788777763 45678899999999999998887764322 1112222221110
Q ss_pred ---------hhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeE-EEEEeCCCCH--HHHHHHhcCCCC
Q 048831 88 ---------RFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKV-LLVIDDVADV--EQLQSLAGKRDW 155 (1051)
Q Consensus 88 ---------~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~-LlVlDdv~~~--~~~~~l~~~~~~ 155 (1051)
.++....-+-+.++++.++.+...... ...+.| ++|+-.++.. +.-.++......
T Consensus 87 sS~yHlEitPSDaG~~DRvViQellKevAQt~qie~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk 153 (351)
T KOG2035|consen 87 SSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET-------------QGQRPFKVVVINEADELTRDAQHALRRTMEK 153 (351)
T ss_pred cccceEEeChhhcCcccHHHHHHHHHHHHhhcchhh-------------ccccceEEEEEechHhhhHHHHHHHHHHHHH
Confidence 011100113344455555442211110 012333 5666666543 223334443333
Q ss_pred CCCCCEEEEEeCChh-hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch-HHHHHH
Q 048831 156 FGLGSRILITTRDKQ-LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL-ALKVLG 233 (1051)
Q Consensus 156 ~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~g 233 (1051)
....+|+|+...... +........ -.+++...+++|....++...-+.+-..+ .+++.+|+++++|+-- |+-++-
T Consensus 154 Ys~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred HhcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHH
Confidence 456678876443321 111111111 26899999999999999887755544333 5889999999999753 333322
Q ss_pred HHh-cC-----C----CHHHHHHHHHHhh
Q 048831 234 SFL-IG-----R----SVDQWRSALERLK 252 (1051)
Q Consensus 234 ~~L-~~-----~----~~~~w~~~l~~l~ 252 (1051)
..- .+ . ..-+|+-++....
T Consensus 231 ~~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 231 AVRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred HHHhccccccccCCCCCCccHHHHHHHHH
Confidence 221 11 1 3458988887654
No 238
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.025 Score=62.19 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=25.1
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..++|+|+|++|+||||++.+++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45799999999999999999999876544
No 239
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.021 Score=63.65 Aligned_cols=148 Identities=20% Similarity=0.295 Sum_probs=79.4
Q ss_pred CCccccchhH---HHHHHHHhcCC-------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCC
Q 048831 24 VKELVGIESR---LEKLRFLMGTG-------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEG 93 (1051)
Q Consensus 24 ~~~~vGr~~~---~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 93 (1051)
.++.-|.|+. +++|.+.|.+. +.=++=|.++|++|.|||-||++++-...-.| |... ...++
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPF----F~~s-GSEFd--- 374 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPF----FYAS-GSEFD--- 374 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCe----Eecc-ccchh---
Confidence 3456677754 45555666543 12256799999999999999999987543222 3221 11111
Q ss_pred CHHHHHHHHHHHHhccCCCccccchhhHHHHH----HhhCCCeEEEEEeCCCCH-------------HHHHHHhcCCCCC
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDDGINIIG----SRLRQQKVLLVIDDVADV-------------EQLQSLAGKRDWF 156 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~----~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~ 156 (1051)
+++ +..+...++ ..-+.-+++|.+|.+|.. ..+.+++..+..+
T Consensus 375 -------Em~-------------VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF 434 (752)
T KOG0734|consen 375 -------EMF-------------VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF 434 (752)
T ss_pred -------hhh-------------hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc
Confidence 110 111222222 223457899999988642 1266677766665
Q ss_pred CCCCE-EEE-EeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhh
Q 048831 157 GLGSR-ILI-TTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 157 ~~gs~-Iii-TTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
.+..- ||| .|.-+..+... .++. .+.|..-+..--.+++..+.
T Consensus 435 ~qNeGiIvigATNfpe~LD~AL~RPGRFD~--~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 435 KQNEGIIVIGATNFPEALDKALTRPGRFDR--HVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred CcCCceEEEeccCChhhhhHHhcCCCccce--eEecCCCCcccHHHHHHHHH
Confidence 54333 333 33333322222 1232 45665555555555665554
No 240
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.51 E-value=0.0093 Score=59.77 Aligned_cols=37 Identities=30% Similarity=0.520 Sum_probs=31.5
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
...+|.|.|+.|.||||+|++++.++...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3469999999999999999999999887777766663
No 241
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.51 E-value=0.016 Score=72.49 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=38.3
Q ss_pred CccccchhHHHHHHHHhcCC-------CCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 25 KELVGIESRLEKLRFLMGTG-------STDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..++|.+.-++.+...+... .....++.++|+.|+|||++|+++++.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 45889999988887776531 112247899999999999999999986643
No 242
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.058 Score=54.15 Aligned_cols=154 Identities=16% Similarity=0.324 Sum_probs=85.1
Q ss_pred CCCCCCccccc-hhHHHHHHHHhcCC-----------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhh
Q 048831 20 EPKTVKELVGI-ESRLEKLRFLMGTG-----------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRE 87 (1051)
Q Consensus 20 ~~~~~~~~vGr-~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~ 87 (1051)
.|..+-+.||+ +..+++|.+.+.-. -..++-|.++|++|.|||-||++|++.- .||+..++.
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firvsg 214 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSG 214 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEech
Confidence 34444455654 67777777766531 1346778999999999999999999742 344444443
Q ss_pred hhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhh----CCCeEEEEEeCCCCHH--------------H--HH
Q 048831 88 RFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL----RQQKVLLVIDDVADVE--------------Q--LQ 147 (1051)
Q Consensus 88 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l----~~k~~LlVlDdv~~~~--------------~--~~ 147 (1051)
. .-+|+-+ .++..++++.+ .+-+.+|..|.++... | .-
T Consensus 215 s-------elvqk~i---------------gegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtml 272 (404)
T KOG0728|consen 215 S-------ELVQKYI---------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTML 272 (404)
T ss_pred H-------HHHHHHh---------------hhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHH
Confidence 2 1112211 12222333322 3467788888876421 1 11
Q ss_pred HHhcCCCCC--CCCCEEEEEeCChhhhHhhCCCC---cceEEcCCCChhHHHHHHHHhh
Q 048831 148 SLAGKRDWF--GLGSRILITTRDKQLLVAHEVDE---EHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 148 ~l~~~~~~~--~~gs~IiiTTR~~~~~~~~~~~~---~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
.++..+..+ .+.-+||..|..-+++...-... ++.++..+-+++.-.+++.-+.
T Consensus 273 ellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 273 ELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred HHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 222223322 24567887775544443322111 1267888888777777776554
No 243
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.50 E-value=0.03 Score=63.79 Aligned_cols=70 Identities=27% Similarity=0.373 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhcc-CCCCCCCccccchhHH----HHHHHHhcCCC------CCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 4 EFIEEIVNVISSKIH-TEPKTVKELVGIESRL----EKLRFLMGTGS------TDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 4 ~~i~~i~~~i~~~l~-~~~~~~~~~vGr~~~~----~~l~~~L~~~~------~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
++++++++.|.+++. ... ...+-.++..+ ++|.+.+.... ....+|.++|.+|+||||+|.+++..+
T Consensus 42 ~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 42 KLVKELSKSIKERALEEEP--PKGLTPREHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred HHHHHHHHHHHHHHhcccc--cccCCcHHHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 456666666665544 111 11122222222 34555554321 246799999999999999999999877
Q ss_pred hcc
Q 048831 73 SHE 75 (1051)
Q Consensus 73 ~~~ 75 (1051)
+.+
T Consensus 120 ~~~ 122 (437)
T PRK00771 120 KKK 122 (437)
T ss_pred HHc
Confidence 654
No 244
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.50 E-value=0.042 Score=63.71 Aligned_cols=204 Identities=12% Similarity=0.108 Sum_probs=115.2
Q ss_pred CCCCCccccchhHHHHHHHHhcC---CCCCeeEEEEEcCCcchHHHHHHHHHHHHh---c-----cccceEEEeehhhhh
Q 048831 21 PKTVKELVGIESRLEKLRFLMGT---GSTDVRMIGIWGMGGLGKTTLARVVYDLIS---H-----EFYASSFLADVRERF 89 (1051)
Q Consensus 21 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~---~-----~f~~~~~~~~~~~~~ 89 (1051)
...+..+-+|+.+..+|...+.. .......+-|.|.+|.|||..+..|.+.+. . .|++ +.+...+-
T Consensus 392 s~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l-- 468 (767)
T KOG1514|consen 392 SAVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRL-- 468 (767)
T ss_pred hhccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceee--
Confidence 33677788999999999888753 223345899999999999999999998554 1 2332 22322211
Q ss_pred hcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhC-----CCeEEEEEeCCCCHHH--HHHHhcCCCCC-CCCCE
Q 048831 90 EKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLR-----QQKVLLVIDDVADVEQ--LQSLAGKRDWF-GLGSR 161 (1051)
Q Consensus 90 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~-----~k~~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~ 161 (1051)
.. ..++...|...+..... .+......+..+.. .+..++++|+++..-. -+-+--.+.|- .++|+
T Consensus 469 --~~-~~~~Y~~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sK 541 (767)
T KOG1514|consen 469 --AS-PREIYEKIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSK 541 (767)
T ss_pred --cC-HHHHHHHHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCc
Confidence 12 26677777777653322 23444455555543 4668999999865422 11222223342 36787
Q ss_pred EEEEeC-Ch-hhhH-hhC-----CCCcceEEcCCCChhHHHHHHHHhhhcCCC-CchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 162 ILITTR-DK-QLLV-AHE-----VDEEHILNLDVLNDDEALQLFSMKAFKSHQ-PVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 162 IiiTTR-~~-~~~~-~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
++|-+= +. .+.. .+. --+...+..++-+.++-.++...+..+-.. .....+-++++|+.-.|-.-.|+.+.
T Consensus 542 Lvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 542 LVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred eEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 765432 11 1110 000 011125778888888888887766532211 22333444555555555555555544
Q ss_pred HH
Q 048831 233 GS 234 (1051)
Q Consensus 233 g~ 234 (1051)
-+
T Consensus 622 ~R 623 (767)
T KOG1514|consen 622 RR 623 (767)
T ss_pred HH
Confidence 33
No 245
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.50 E-value=0.0063 Score=63.77 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=35.5
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
.|.++|..+-..-.++.|+|.+|+|||++|.+++.........++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455556433344579999999999999999999887655555666665
No 246
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.48 E-value=0.003 Score=60.48 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEcCCcchHHHHHHHHHHHH
Q 048831 51 IGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 51 v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 247
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.47 E-value=0.0024 Score=59.53 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 248
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.46 E-value=0.0032 Score=59.09 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=27.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcc-ccceEEE
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHE-FYASSFL 82 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~ 82 (1051)
--|+|.||+|+||||+++++++.++.. |...-|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 458999999999999999999988776 5554443
No 249
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.45 E-value=0.027 Score=68.83 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=38.6
Q ss_pred CccccchhHHHHHHHHhcCC-------CCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 25 KELVGIESRLEKLRFLMGTG-------STDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..++|.+..++.|...+... ......+.++|++|+|||++|++++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999998888776521 12245789999999999999999998773
No 250
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.43 E-value=0.0028 Score=69.11 Aligned_cols=49 Identities=16% Similarity=0.324 Sum_probs=41.2
Q ss_pred ccccchhHHHHHHHHhcCC----CCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 26 ELVGIESRLEKLRFLMGTG----STDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~~----~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+++|.++.++++.+++... +...++++|+|++|.||||||+++++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999998888642 234589999999999999999999986644
No 251
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.37 E-value=0.0084 Score=65.76 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=56.3
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccce-EEEeehhhhhhcCCCHHHHHHHHHHHHhccCC-Cc
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYAS-SFLADVRERFEKEGSVISLQKQLLSNLLKLGD-IS 113 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~~ 113 (1051)
++...+..-. .-+.++|+|.+|+|||||++.+++.+..+.+.. +++..+.+. ..-+.++.+.+...+..... ..
T Consensus 122 RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER---~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 122 RVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDER---PEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCC---CCCHHHHHHHHhhhEEeecCCCC
Confidence 3444444322 235679999999999999999999877655333 344434332 22224555555544332110 11
Q ss_pred ccc---chhhHHHHHHhh--CCCeEEEEEeCCCCH
Q 048831 114 IWH---VDDGINIIGSRL--RQQKVLLVIDDVADV 143 (1051)
Q Consensus 114 ~~~---~~~~~~~i~~~l--~~k~~LlVlDdv~~~ 143 (1051)
... .......+.+++ ++++++||+|++...
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 100 010111122222 579999999998543
No 252
>PRK14974 cell division protein FtsY; Provisional
Probab=96.35 E-value=0.067 Score=58.78 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.1
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..++|+++|+.|+||||++.+++..++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999998877654
No 253
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.035 Score=63.13 Aligned_cols=128 Identities=17% Similarity=0.270 Sum_probs=76.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR 127 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 127 (1051)
..=|.+||++|.|||-||++|++.-...|- . +.+ . +++..-. ...+..+..+.++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFi-----s-VKG--------P----ELlNkYV-------GESErAVR~vFqR 599 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFI-----S-VKG--------P----ELLNKYV-------GESERAVRQVFQR 599 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceE-----e-ecC--------H----HHHHHHh-------hhHHHHHHHHHHH
Confidence 456889999999999999999998766652 2 221 1 2222221 0112233333333
Q ss_pred h-CCCeEEEEEeCCCCHH-------------HHHHHhcCCCCCC--CCCEEEEEeCChhhhHh-----hCCCCcceEEcC
Q 048831 128 L-RQQKVLLVIDDVADVE-------------QLQSLAGKRDWFG--LGSRILITTRDKQLLVA-----HEVDEEHILNLD 186 (1051)
Q Consensus 128 l-~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~~--~gs~IiiTTR~~~~~~~-----~~~~~~~~~~l~ 186 (1051)
. ...+++|.||.++..- -+..|+..+.... .|--||-.|.-+++... -..+. .+-|+
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk--~LyV~ 677 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDK--LLYVG 677 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCc--eeeec
Confidence 3 3588999999986421 2455555554332 45555655544433222 12344 78888
Q ss_pred CCChhHHHHHHHHhhh
Q 048831 187 VLNDDEALQLFSMKAF 202 (1051)
Q Consensus 187 ~L~~~ea~~Lf~~~a~ 202 (1051)
.-+.+|-.+++...+-
T Consensus 678 lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 678 LPNAEERVAILKTITK 693 (802)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 8889999999987764
No 254
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.33 E-value=0.0003 Score=63.79 Aligned_cols=110 Identities=19% Similarity=0.289 Sum_probs=63.6
Q ss_pred ecEEeeeCCCCC--CcCchhhCCCCCCCEEEecCccCcccCcccc-CCCCCCEEecCCCCCCCcccccccCCCCCCEEec
Q 048831 546 LRTLKLSGCSKL--KKFPAIVASMEDLSELYLDGTYITEVPSSIE-LLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNL 622 (1051)
Q Consensus 546 L~~L~Ls~c~~~--~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 622 (1051)
+..++|+.|... ...+..+.....|+..+|++|.+..+|+.+. .++.++.|++.+|. +..+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhccc
Confidence 444566665432 1222333444556666777777777776653 34466677776644 4556666666666666666
Q ss_pred cCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcc
Q 048831 623 SGCCKLENVPDTLGQVESLEELDISGTATRRPPSS 657 (1051)
Q Consensus 623 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 657 (1051)
+.|.. ...|..+..+.+|-.|+..+|...++|..
T Consensus 108 ~~N~l-~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPL-NAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccCcc-ccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 66543 33455555566666666666666666543
No 255
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.32 E-value=0.00021 Score=64.68 Aligned_cols=59 Identities=19% Similarity=0.336 Sum_probs=39.0
Q ss_pred CCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCc
Q 048831 707 LCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 707 l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
++.++.|++++|.+++ +|..+..++.|+.|+++.|.+...|..+..+.+|-.|+..++.
T Consensus 76 f~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 76 FPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 3455666666676654 6666777777777777777777777666666666666665543
No 256
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.30 E-value=0.062 Score=58.22 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=38.8
Q ss_pred CCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc
Q 048831 21 PKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY 77 (1051)
Q Consensus 21 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 77 (1051)
|.....++=..+....+...+..+ +.|.|.|++|+||||+|++++..+...|-
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 333445655556666777777542 46999999999999999999998865543
No 257
>PRK06696 uridine kinase; Validated
Probab=96.29 E-value=0.0074 Score=63.02 Aligned_cols=47 Identities=23% Similarity=0.185 Sum_probs=36.5
Q ss_pred cchhHHHHHHHHhcC-CCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 29 GIESRLEKLRFLMGT-GSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 29 Gr~~~~~~l~~~L~~-~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
.|+..+++|...+.. ..+...+|+|.|.+|.||||+|+++++.+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 356667777666543 34567899999999999999999999987654
No 258
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.28 E-value=0.0058 Score=59.67 Aligned_cols=60 Identities=23% Similarity=0.250 Sum_probs=42.1
Q ss_pred CCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccc----cccCCCCCCEEeccCC
Q 048831 707 LCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPA----SISGLFNLKYLELEDC 766 (1051)
Q Consensus 707 l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~----~~~~l~~L~~L~l~~c 766 (1051)
+++|..|.|.+|++.+-+-...+..+|.|++|.+-+|.++.-+. .+..+|+|+.|+...-
T Consensus 87 ~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 87 LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 45677777777777654444556678888888888888775443 4567788888887653
No 259
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.28 E-value=0.023 Score=71.27 Aligned_cols=50 Identities=16% Similarity=0.243 Sum_probs=38.1
Q ss_pred CccccchhHHHHHHHHhcC-------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 25 KELVGIESRLEKLRFLMGT-------GSTDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~-------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..++|.+.-++.+...+.. .......+.++|+.|+|||+||+++++.+-.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 5588999888888776642 1122346789999999999999999987643
No 260
>PRK04296 thymidine kinase; Provisional
Probab=96.28 E-value=0.011 Score=59.75 Aligned_cols=112 Identities=18% Similarity=0.104 Sum_probs=60.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCC-CccccchhhHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGD-ISIWHVDDGINIIGSR 127 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~~~~~~~~~~~~i~~~ 127 (1051)
.++.|+|..|.||||+|..++.+...+...+.++... .....+. . .+.+.+..... .......+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~~~~-~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDRYGE-G----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--ccccccC-C----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 5788999999999999999998876654444433210 0001111 1 12222210000 011222333334444
Q ss_pred hCCCeEEEEEeCCCC--HHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 128 LRQQKVLLVIDDVAD--VEQLQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 128 l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
..++.-+||+|.+.- .+++..+...+. ..|..||+|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 233556899999854 344444433221 45789999999854
No 261
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.28 E-value=0.016 Score=61.78 Aligned_cols=101 Identities=19% Similarity=0.116 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCC
Q 048831 33 RLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDI 112 (1051)
Q Consensus 33 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 112 (1051)
.++.+.+++... ..+|.|.|..|.||||+++++...+...-...+.+.+-.+.. ..+. .++. .
T Consensus 68 ~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~-~~~~---------~q~~----v 130 (264)
T cd01129 68 NLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ-IPGI---------NQVQ----V 130 (264)
T ss_pred HHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec-CCCc---------eEEE----e
Confidence 344455555432 358999999999999999999887654222233333221110 0110 0000 0
Q ss_pred ccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHHh
Q 048831 113 SIWHVDDGINIIGSRLRQQKVLLVIDDVADVEQLQSLA 150 (1051)
Q Consensus 113 ~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~~~~l~ 150 (1051)
...........++..++..+=.|+++++.+.+....+.
T Consensus 131 ~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 131 NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 00011234567778888888899999999887655443
No 262
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.27 E-value=0.025 Score=57.69 Aligned_cols=110 Identities=16% Similarity=0.185 Sum_probs=63.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL 128 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l 128 (1051)
.+|.|.|+.|.||||++.++...+.......++...-......... . .+. . .... ..+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~-~----~~i---~-q~~v-g~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESK-R----SLI---N-QREV-GLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCc-c----cee---e-eccc-CCCccCHHHHHHHHh
Confidence 4789999999999999999888776554444443211100000000 0 000 0 0000 011233455677777
Q ss_pred CCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 048831 129 RQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQL 171 (1051)
Q Consensus 129 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~ 171 (1051)
+..+=++++|++.+.+.+....... ..|..++.|+....+
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 7777899999998877665544321 235567777776554
No 263
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.24 E-value=0.018 Score=72.49 Aligned_cols=51 Identities=20% Similarity=0.353 Sum_probs=39.6
Q ss_pred CccccchhHHHHHHHHhcCC------C-CCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 25 KELVGIESRLEKLRFLMGTG------S-TDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~------~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..++|.+..++.+...+... . ....++.+.|+.|+|||++|+.++..+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 45899999999888777531 1 123578899999999999999999876443
No 264
>PRK07667 uridine kinase; Provisional
Probab=96.22 E-value=0.0092 Score=60.65 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 34 LEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 34 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
++.+...+....+...+|+|.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345555665544556899999999999999999999987654
No 265
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.042 Score=61.45 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=22.3
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..++++.|++|+||||+|.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 266
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.18 E-value=0.014 Score=57.51 Aligned_cols=34 Identities=29% Similarity=0.274 Sum_probs=26.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
++.|+|.+|+||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987765444444543
No 267
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.041 Score=61.70 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..++|.++|+.|+||||.+.+++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998665
No 268
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.14 E-value=0.0097 Score=60.32 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=24.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
++++.++|+.|+||||.+.+++.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 3789999999999999999999877766
No 269
>PRK10867 signal recognition particle protein; Provisional
Probab=96.13 E-value=0.072 Score=60.62 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=30.7
Q ss_pred HHHHHHhcCC-------CCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 35 EKLRFLMGTG-------STDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 35 ~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
++|.+++... .....+|.++|.+|+||||.|.+++..++.+
T Consensus 80 ~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 80 DELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred HHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3566666432 1336899999999999999999988877655
No 270
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.10 E-value=0.009 Score=61.83 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=32.8
Q ss_pred HhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 40 LMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 40 ~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
+|..+-..-+++.|+|++|+|||++|.+++.........++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34333244589999999999999999998877655555666765
No 271
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.08 E-value=0.033 Score=58.43 Aligned_cols=48 Identities=25% Similarity=0.214 Sum_probs=33.7
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc------cceEEEe
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF------YASSFLA 83 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~ 83 (1051)
.|.++|..+-..-.++.|+|.+|+|||++|..++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 45555543334557999999999999999999887654443 3455554
No 272
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.03 E-value=0.00066 Score=80.64 Aligned_cols=35 Identities=37% Similarity=0.572 Sum_probs=22.0
Q ss_pred CCCCCEEecCCCCCCCC---CCCCCCCCccCEEEeeCC
Q 048831 463 LNTLKVMKLSHSENLIK---TPNFIEVPNLEVLDLKGC 497 (1051)
Q Consensus 463 l~~L~~L~L~~~~~l~~---~~~~~~l~~L~~L~L~~c 497 (1051)
+++|+.|.+..+..+.. .+....+++|+.|++++|
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 56667777766655543 233556777777777763
No 273
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.05 Score=64.49 Aligned_cols=151 Identities=19% Similarity=0.255 Sum_probs=83.6
Q ss_pred CccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCC
Q 048831 25 KELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEG 93 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 93 (1051)
....|.+...+.+.+.+.. +-...+.+.++|++|.|||.||++++......|-.... .+
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~----~~------ 311 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG----SE------ 311 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC----HH------
Confidence 4455666555555544321 11345689999999999999999999966554432211 11
Q ss_pred CHHHHHHHHHHHHhccCCCccccchh-hHHHHHHhhCCCeEEEEEeCCCCHH-------------HHHHHhcCCCCCCCC
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDD-GINIIGSRLRQQKVLLVIDDVADVE-------------QLQSLAGKRDWFGLG 159 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~-~~~~i~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~g 159 (1051)
+++... ...+. ........-+..+..|.+|+++... ....++..+......
T Consensus 312 --------l~sk~v-------Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 312 --------LLSKWV-------GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred --------Hhcccc-------chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc
Confidence 111000 00111 1122223335688999999985321 233343333322333
Q ss_pred CE--EEEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhhh
Q 048831 160 SR--ILITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKAF 202 (1051)
Q Consensus 160 s~--IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 202 (1051)
+. ||-||-........ ..+. .+.+..-+.++..+.|..+.-
T Consensus 377 ~~v~vi~aTN~p~~ld~a~lR~gRfd~--~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 377 EGVLVIAATNRPDDLDPALLRPGRFDR--LIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred CceEEEecCCCccccCHhhcccCccce--EeecCCCCHHHHHHHHHHHhc
Confidence 33 44444443332221 2333 899999999999999998874
No 274
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.02 E-value=0.021 Score=61.22 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.7
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
.+.++++++|++|+||||++.+++..++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346899999999999999999999877654
No 275
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.01 E-value=0.094 Score=59.68 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhcc--CCCCCCC-ccccchhHHHHHHHHhcCCC-------CCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 4 EFIEEIVNVISSKIH--TEPKTVK-ELVGIESRLEKLRFLMGTGS-------TDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 4 ~~i~~i~~~i~~~l~--~~~~~~~-~~vGr~~~~~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
++++++++.|.+++. ..+.... .-.-...-.++|.+++.... ..+.++.++|.+|+||||.|..++..+.
T Consensus 45 ~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 45 QVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred HHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 455666666665544 1111111 00011223344556664321 2357999999999999999999988765
No 276
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.00 E-value=0.026 Score=59.48 Aligned_cols=48 Identities=21% Similarity=0.116 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
.+.++|..+-..-.++.|+|.+|+|||++|.++......+-..+.|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 455566544345679999999999999999998654333334455554
No 277
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.97 E-value=0.013 Score=61.85 Aligned_cols=37 Identities=30% Similarity=0.361 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.|.++|..+-..-.++.|+|.+|+|||++|.+++...
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 3445554333445799999999999999999987543
No 278
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.94 E-value=0.02 Score=59.64 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=35.2
Q ss_pred HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 35 EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 35 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
..|.++|..+-..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455666533345589999999999999999999887655444455553
No 279
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.096 Score=54.24 Aligned_cols=52 Identities=27% Similarity=0.328 Sum_probs=37.3
Q ss_pred CccccchhHHHHHHHHhcC----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 25 KELVGIESRLEKLRFLMGT----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
.+.-|.+...+.|.+...- ....-+-|.++|++|.||+-||++|+-.....|
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF 194 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF 194 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce
Confidence 4566777777777665331 112357899999999999999999997654433
No 280
>PRK06762 hypothetical protein; Provisional
Probab=95.91 E-value=0.033 Score=55.16 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=22.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.+|.|+|+.|+||||+|+++.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 281
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.90 E-value=0.0043 Score=63.04 Aligned_cols=93 Identities=20% Similarity=0.177 Sum_probs=50.8
Q ss_pred CCCCccEEEccCCCCcCCCccc-----ccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCC
Q 048831 637 QVESLEELDISGTATRRPPSSI-----FLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLS 711 (1051)
Q Consensus 637 ~l~~L~~L~l~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~ 711 (1051)
+-|.|+...+..|.+...+... ..-.+|+.+.+..|...+.- . ...+.-.+..+.+|+
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpeg-v----------------~~L~~~gl~y~~~Le 217 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEG-V----------------TMLAFLGLFYSHSLE 217 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcch-h----------------HHHHHHHHHHhCcce
Confidence 3466777777777765554322 22246777777665432210 0 000112244567788
Q ss_pred EEeccCCCCCCc---cccccccCCCcCcEEeccCCCce
Q 048831 712 KLDLSDCGLREG---AILSDICNLHSLKELYLSGNNFV 746 (1051)
Q Consensus 712 ~L~L~~~~l~~~---~~~~~l~~l~~L~~L~L~~n~l~ 746 (1051)
.|+|.+|-++-. .+...++..+.|++|.+..|-++
T Consensus 218 vLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 218 VLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred eeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 888888865421 12233455566777777777655
No 282
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.87 E-value=0.046 Score=55.65 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 34 LEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 34 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
.+.+...+..+ -+++.|.|.+|.||||+++.+...+...
T Consensus 7 ~~a~~~~l~~~---~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 7 REAVRAILTSG---DRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHCT---CSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC---CeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 33444455432 3689999999999999999998877665
No 283
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.16 Score=56.31 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.2
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.|=-.++|++|.|||++..|+++.+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc
Confidence 4667899999999999999999865
No 284
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.78 E-value=0.044 Score=61.33 Aligned_cols=49 Identities=27% Similarity=0.274 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 35 EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 35 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555433234579999999999999999999987765544455554
No 285
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.75 E-value=0.12 Score=61.77 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=39.9
Q ss_pred CCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 23 TVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999998888776433333568899999999999999998754
No 286
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.12 Score=57.51 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=24.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
-.+++++|+.|+||||++.+++.+....+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 47999999999999999999998765443
No 287
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.73 E-value=0.016 Score=55.69 Aligned_cols=35 Identities=31% Similarity=0.294 Sum_probs=29.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
.+|-|+|.+|.||||||+++..++.+......++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 68999999999999999999999988766565554
No 288
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.72 E-value=0.13 Score=58.04 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=38.8
Q ss_pred CCCccccchhHHHHHHHHhc-----CCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 23 TVKELVGIESRLEKLRFLMG-----TGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~-----~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..+++---.+.++++..||. ...-+.+++.|+|++|+||||.++.+...+
T Consensus 80 t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 80 TLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred cHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 33445555677888999998 344456899999999999999999998754
No 289
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.72 E-value=0.075 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=21.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
+|.|.|++|+||||+|+++++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999865
No 290
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.71 E-value=0.15 Score=58.40 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.++++++|++|+||||++.+++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999887665
No 291
>PRK08118 topology modulation protein; Reviewed
Probab=95.69 E-value=0.0086 Score=59.13 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=22.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.|.|.|++|+||||+|+++++.+.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999987643
No 292
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.69 E-value=0.005 Score=62.85 Aligned_cols=61 Identities=25% Similarity=0.369 Sum_probs=41.7
Q ss_pred CceecEEeeeCC--CCCCcCchhhCCCCCCCEEEecCccCcccC--ccccCCCCCCEEecCCCCC
Q 048831 543 LKCLRTLKLSGC--SKLKKFPAIVASMEDLSELYLDGTYITEVP--SSIELLTGLELLNLNDCKN 603 (1051)
Q Consensus 543 l~~L~~L~Ls~c--~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~ 603 (1051)
+++|++|.++.| .....++.....+++|++|++++|+|..+. ..+..+.+|..|++.+|..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 778888888888 556666666667788888888888877521 1244555666666666653
No 293
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.67 E-value=0.014 Score=67.12 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=42.2
Q ss_pred CCccccchhHHHHHHHHhc----CCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 24 VKELVGIESRLEKLRFLMG----TGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~----~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..+++|.++.+++|.+.|. .-....+++.++|++|+||||||+.++..+...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 3468999999999998882 223455899999999999999999999866543
No 294
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.65 E-value=0.0087 Score=54.67 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=21.1
Q ss_pred EEEEcCCcchHHHHHHHHHHHHhccccce
Q 048831 51 IGIWGMGGLGKTTLARVVYDLISHEFYAS 79 (1051)
Q Consensus 51 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 79 (1051)
|.|+|.+|+||||+|++++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 78999999999999999999888877643
No 295
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.055 Score=56.51 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=26.3
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
.+..++|||+.|.|||-+|++|+.++.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 467899999999999999999999876554
No 296
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.59 E-value=0.067 Score=51.76 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+|.|+|.+|.||||+|+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999987653
No 297
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.039 Score=57.26 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=33.5
Q ss_pred HHHHHHhhCCCeEEEEEeC----CCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhhHh
Q 048831 121 INIIGSRLRQQKVLLVIDD----VADV--EQLQSLAGKRDWFGLGSRILITTRDKQLLVA 174 (1051)
Q Consensus 121 ~~~i~~~l~~k~~LlVlDd----v~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~ 174 (1051)
.-.+.+.|.+++=|++||. ||.. ..+-.++..+. ..|..|+++|.|-.....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 3346677888999999996 3332 33444444333 238899999999764433
No 298
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.54 E-value=0.043 Score=54.52 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=20.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVY 69 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~ 69 (1051)
-.+++|.|+.|.|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999886
No 299
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.52 E-value=0.052 Score=53.22 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=23.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
+.|.+.|.+|+||||+|+.++..+++.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4678999999999999999998776653
No 300
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.52 E-value=0.032 Score=60.65 Aligned_cols=50 Identities=28% Similarity=0.305 Sum_probs=35.8
Q ss_pred HHHHHHHhc-CCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 34 LEKLRFLMG-TGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 34 ~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
...|..+|. .+=..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 345666665 33245589999999999999999988776655545556664
No 301
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.50 E-value=0.044 Score=52.65 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987544
No 302
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.50 E-value=0.011 Score=55.59 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=20.6
Q ss_pred EEEEcCCcchHHHHHHHHHHHH
Q 048831 51 IGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 51 v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
|+|.|++|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 303
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.46 E-value=0.048 Score=67.26 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=39.3
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 22 KTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 22 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.....++|+...++++.+.+..-...-.-|.|+|..|+|||++|++++..-
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 345579999998888876665322233578999999999999999998754
No 304
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.44 E-value=0.22 Score=56.32 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.0
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
...+|.++|..|+||||+|.+++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999998876654
No 305
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.43 E-value=0.032 Score=54.96 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
++.|.|.+|.|||++|.++...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999998765
No 306
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.42 E-value=0.035 Score=57.65 Aligned_cols=126 Identities=19% Similarity=0.172 Sum_probs=67.8
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhh-hhhcCCCHHHHHHHHHHHHhccCCC-----ccccch-h
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRE-RFEKEGSVISLQKQLLSNLLKLGDI-----SIWHVD-D 119 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~l~~~ll~~l~~~~~~-----~~~~~~-~ 119 (1051)
+-.+++|+|-+|.||||+|+.+..-...... .+++..-.- ....... .+...+++..++..... ..-+-. .
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i~~~~~~~~-~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSG-EILFEGKDITKLSKEER-RERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcchhhcchhHH-HHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 3468999999999999999999986554433 333331100 0001111 23344555554421111 011111 2
Q ss_pred hHHHHHHhhCCCeEEEEEeCCCCH------HHHHHHhcCCCCCCCCCEEEEEeCChhhhHhh
Q 048831 120 GINIIGSRLRQQKVLLVIDDVADV------EQLQSLAGKRDWFGLGSRILITTRDKQLLVAH 175 (1051)
Q Consensus 120 ~~~~i~~~l~~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~ 175 (1051)
..-.|.+.+.-++-++|.|..-.. .|+-.++..+. ...|-..+..|.|-.+....
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 233466777889999999975322 23333333221 12466777778787665543
No 307
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.41 E-value=0.056 Score=53.63 Aligned_cols=120 Identities=13% Similarity=0.041 Sum_probs=62.6
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHh---ccCCCc---------cc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLL---KLGDIS---------IW 115 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~---~~~~~~---------~~ 115 (1051)
...|-|+|-.|-||||.|..++-+...+-..+.++.-+.... ..+- ....+.+- .+. ...... ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE-~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGE-RNLLEFGG-GVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCH-HHHHhcCC-CcEEEECCCCCcccCCCcHHHHH
Confidence 468999999999999999998887665544444444333221 1122 12222110 000 000000 01
Q ss_pred cchhhHHHHHHhhCCCe-EEEEEeCCCCHHH-----HHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 116 HVDDGINIIGSRLRQQK-VLLVIDDVADVEQ-----LQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 116 ~~~~~~~~i~~~l~~k~-~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
...+..+..++.+...+ =|+|||.+-..-. .+.+...+....++..||+|=|+..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223344455555544 5999999843211 2222222223356779999999864
No 308
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.40 E-value=0.038 Score=60.13 Aligned_cols=50 Identities=28% Similarity=0.273 Sum_probs=35.9
Q ss_pred HHHHHHHhc-CCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 34 LEKLRFLMG-TGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 34 ~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
...|..+|. .+=+.-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 345666665 22245579999999999999999998876655545566664
No 309
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.043 Score=55.57 Aligned_cols=48 Identities=27% Similarity=0.345 Sum_probs=36.1
Q ss_pred CccccchhHHHHHHHHhcCC-----------CCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 25 KELVGIESRLEKLRFLMGTG-----------STDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.+.=|-.+++++|.+..... -+..+-|.++|++|.|||-+|++|+++-
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 34557778888887664321 1345678999999999999999999874
No 310
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.46 Score=48.30 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=41.5
Q ss_pred CCCCCCccccchhHHHHHHHHhcCC-----------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTG-----------STDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
+.....+.=|.++.++++.+.+--. -..++-|..||++|.|||-+|++.+.+-...|
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF 233 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF 233 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH
Confidence 3334456778899999887775421 12356789999999999999999987655443
No 311
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.39 E-value=0.081 Score=59.06 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=62.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe-ehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA-DVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR 127 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 127 (1051)
..|.|.|+.|.||||+++++...+.......++.. +-.+.. .... ..+ +. ..... .........++..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~-----~~~---i~-q~evg-~~~~~~~~~l~~~ 191 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNK-----RSL---IN-QREVG-LDTLSFANALRAA 191 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCc-----cce---EE-ccccC-CCCcCHHHHHHHh
Confidence 68999999999999999999987765554554433 111110 0000 000 00 00111 1123445667788
Q ss_pred hCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 128 LRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 128 l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
|+..+=.|++|.+.+.+.+....... ..|..|+.|+....
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 88888899999998887765533321 23555555555433
No 312
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.39 E-value=0.012 Score=58.04 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
++.|.|.+|.||||+|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999998764
No 313
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.39 E-value=0.014 Score=59.53 Aligned_cols=26 Identities=42% Similarity=0.673 Sum_probs=23.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
+|+|.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988754
No 314
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.096 Score=57.25 Aligned_cols=49 Identities=27% Similarity=0.320 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 34 LEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 34 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
+.++.+.|..+-=.-.+|.|-|.+|||||||..+++.++..+. .+.++.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs 127 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS 127 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe
Confidence 3455566643222236899999999999999999999998776 455544
No 315
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.38 E-value=0.052 Score=57.85 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=63.5
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHh--ccCC----Cccc-cch
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLL--KLGD----ISIW-HVD 118 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~~~~----~~~~-~~~ 118 (1051)
++.+.++|.|+.|.||||+++.++..+... .+.+++....- . . .+-..++..... .+.. .+.. ...
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~v-~----~-~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~ 181 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKKV-G----I-VDERSEIAGCVNGVPQHDVGIRTDVLDGCP 181 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEEe-e----c-chhHHHHHHHhcccccccccccccccccch
Confidence 345789999999999999999999876543 22222210000 0 0 000111211110 0000 0111 111
Q ss_pred hhHHHHHHhh-CCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhH
Q 048831 119 DGINIIGSRL-RQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQLLV 173 (1051)
Q Consensus 119 ~~~~~i~~~l-~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~ 173 (1051)
. ...+...+ ...+=++|+|.+...+.+..+..... .|..||+||.+..+..
T Consensus 182 k-~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 182 K-AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred H-HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 1 11222222 24777999999988877776665542 4788999999876543
No 316
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.37 E-value=0.052 Score=53.07 Aligned_cols=117 Identities=14% Similarity=-0.006 Sum_probs=60.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhc-cCCCc--c-------ccch
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLK-LGDIS--I-------WHVD 118 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~~~--~-------~~~~ 118 (1051)
.+|-|++-.|.||||.|..++-+...+-..+.++.-+... ...+- ....+.+.-.+.. ..... . ....
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE-~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGE-RAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccCh-HHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 5788888899999999998887765554444433322221 11222 2222222000000 00000 0 0112
Q ss_pred hhHHHHHHhhCCCe-EEEEEeCCCC--------HHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 119 DGINIIGSRLRQQK-VLLVIDDVAD--------VEQLQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 119 ~~~~~i~~~l~~k~-~LlVlDdv~~--------~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
+..+..++.+...+ =|+|||.+-. .+++-.++. ...++..||+|-|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~---~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ---ERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH---hCCCCCEEEEECCCCC
Confidence 23344455555544 4999999842 233333333 2346779999999874
No 317
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.37 E-value=0.12 Score=50.29 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=36.4
Q ss_pred hHHHHHHhhCCCeEEEEEeC----CCCHHHHHH--HhcCCCCCCCCCEEEEEeCChhhhHhhC
Q 048831 120 GINIIGSRLRQQKVLLVIDD----VADVEQLQS--LAGKRDWFGLGSRILITTRDKQLLVAHE 176 (1051)
Q Consensus 120 ~~~~i~~~l~~k~~LlVlDd----v~~~~~~~~--l~~~~~~~~~gs~IiiTTR~~~~~~~~~ 176 (1051)
..-.|.+.+-+++-+++=|. +|-...|+- +...+ ...|..||++|.+..+...+.
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhcc
Confidence 34456666778888888885 454444443 33322 356999999999998766653
No 318
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.37 E-value=0.36 Score=52.92 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=32.8
Q ss_pred eEEcCCCChhHHHHHHHHhhhcCCCCc-hHHHHHHHHHHHhcCCCchHH
Q 048831 182 ILNLDVLNDDEALQLFSMKAFKSHQPV-EEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 182 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~PLal 229 (1051)
.++|++++.+|+..++.-++-.+-... ...+...+++.--.+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 689999999999999987764332222 222345556666669998654
No 319
>PRK09354 recA recombinase A; Provisional
Probab=95.35 E-value=0.044 Score=60.06 Aligned_cols=50 Identities=26% Similarity=0.290 Sum_probs=36.6
Q ss_pred HHHHHHHhc-CCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 34 LEKLRFLMG-TGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 34 ~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
...|..+|. .+=..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 345667776 33245589999999999999999988876655555566665
No 320
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.34 E-value=0.034 Score=59.26 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
.|.++|++|+||||+|+++...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877543
No 321
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.33 E-value=0.088 Score=56.43 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=28.5
Q ss_pred cccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHH
Q 048831 27 LVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVY 69 (1051)
Q Consensus 27 ~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~ 69 (1051)
+-+|..+..--..+|.. +++..|.+.|.+|.|||-||-+..
T Consensus 226 i~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 226 IRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHH
Confidence 34455444444444443 468899999999999999996654
No 322
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.41 Score=52.85 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=27.4
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
..++++|+|+.|+||||++.+++.....+-..+.++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI 240 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 468999999999999999999987664443333333
No 323
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.31 E-value=0.039 Score=53.05 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=25.6
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
-.+++|.|..|.|||||++.+...... ..+.+++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 59 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTW 59 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEE
Confidence 368999999999999999999875432 2344444
No 324
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.30 E-value=0.047 Score=54.29 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.+++|.|..|.|||||++.++....
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 5899999999999999999887543
No 325
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.28 E-value=0.05 Score=58.01 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=21.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..|.|+|.+|.||||+|+.+...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 468999999999999999999877663
No 326
>PRK07261 topology modulation protein; Provisional
Probab=95.26 E-value=0.014 Score=57.87 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.|+|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998754
No 327
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.26 E-value=0.13 Score=66.84 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..+-|.++|++|+|||.||+++|....
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 356799999999999999999998643
No 328
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.23 E-value=0.14 Score=56.71 Aligned_cols=46 Identities=22% Similarity=0.146 Sum_probs=34.4
Q ss_pred cccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 27 LVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 27 ~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
+||+...++++.+.+..-...-.-|.|+|..|+||+++|++++..-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4677777777766665433333568999999999999999998743
No 329
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.22 E-value=0.036 Score=60.56 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHH
Q 048831 35 EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 35 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
..|.++|..+=..-+++-|+|.+|+|||+++.+++-
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 345566653334457899999999999999988764
No 330
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.20 E-value=0.046 Score=56.43 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 33 RLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 33 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
+..++.+.+....++..+|+|+|++|.|||||..++...++.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3445555555444567899999999999999999999887764
No 331
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.18 E-value=0.027 Score=59.88 Aligned_cols=36 Identities=31% Similarity=0.302 Sum_probs=26.5
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHH
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
.|.++|..+-..-.+.=|+|.+|+|||+|+.+++-.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~ 61 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVN 61 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHH
Confidence 455666432233468999999999999999888754
No 332
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.16 E-value=0.052 Score=63.12 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=23.4
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
+.-++..++|++|+||||||..++++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh
Confidence 45689999999999999999999875
No 333
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.13 E-value=0.082 Score=57.19 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=24.8
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..++++|+|++|+||||++.+++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999999876543
No 334
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.13 E-value=0.018 Score=47.16 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
+|+|.|..|.||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 335
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.11 Score=51.64 Aligned_cols=22 Identities=41% Similarity=0.431 Sum_probs=20.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
.|.|.|.+|.||||+|+++.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999987
No 336
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.068 Score=53.75 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 25 KELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
.+.=|.+-..+++.+...- +-+..+-|.++|++|.|||.||++|++.-...|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 3455666666666655432 114567899999999999999999998665544
No 337
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.08 E-value=0.025 Score=64.30 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=38.5
Q ss_pred CccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 25 KELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 35999999999887777654 35889999999999999999986543
No 338
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.06 E-value=0.043 Score=60.09 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=25.7
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
...+++++|++|+||||++.+++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999877654
No 339
>PTZ00301 uridine kinase; Provisional
Probab=95.05 E-value=0.028 Score=57.56 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=25.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
..+|+|.|.+|.||||+|+++.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998775443
No 340
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.04 E-value=0.071 Score=53.58 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=60.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEee--hhhhh--hcCCCHHHHHHHHHHHHhccC--CCccccc---h
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLAD--VRERF--EKEGSVISLQKQLLSNLLKLG--DISIWHV---D 118 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--~~~~~--~~~~~~~~l~~~ll~~l~~~~--~~~~~~~---~ 118 (1051)
-.+++|.|..|.|||||++.++..... ..+.+++.. +.... ..... .....+++..+.-.. ....... .
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~-i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARK-IAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHH-HhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 368999999999999999999875433 344454431 11000 00000 011111333322110 0111111 1
Q ss_pred hhHHHHHHhhCCCeEEEEEeCCC---CHHHHHHHhcCCCCC-CC-CCEEEEEeCChhhh
Q 048831 119 DGINIIGSRLRQQKVLLVIDDVA---DVEQLQSLAGKRDWF-GL-GSRILITTRDKQLL 172 (1051)
Q Consensus 119 ~~~~~i~~~l~~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IiiTTR~~~~~ 172 (1051)
...-.+.+.+...+-++++|+-. +.+..+.+...+... .. +..||++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 12223445566677889999863 222222222222111 22 67888898887654
No 341
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.028 Score=56.71 Aligned_cols=30 Identities=40% Similarity=0.540 Sum_probs=26.9
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..+.+|||.|.+|.||||+|+.+++.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346899999999999999999999988866
No 342
>PRK08356 hypothetical protein; Provisional
Probab=95.00 E-value=0.15 Score=51.90 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.4
Q ss_pred eEEEEEcCCcchHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVY 69 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~ 69 (1051)
.+|+|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999994
No 343
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.99 E-value=0.18 Score=60.92 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=23.2
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.++|+++|+.|+||||++.+++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999998664
No 344
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.98 E-value=0.013 Score=59.97 Aligned_cols=83 Identities=27% Similarity=0.287 Sum_probs=40.1
Q ss_pred CCCCCEEecCCC--CCCCcccccccCCCCCCEEeccCCCCC--CcCCcccCCCCCccEEEccCCCCcCCCc----ccccc
Q 048831 590 LTGLELLNLNDC--KNLVRLPNSINGLKSLKTLNLSGCCKL--ENVPDTLGQVESLEELDISGTATRRPPS----SIFLM 661 (1051)
Q Consensus 590 l~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~L~~c~~l--~~lp~~l~~l~~L~~L~l~~~~~~~~~~----~l~~l 661 (1051)
|++|+.|.++.| .....++.....+++|++|++++|..- +++ ..+..+++|..|++.+|....+-. .+.-+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 455555665555 333333333344456666666655432 111 123445556666666665444321 12235
Q ss_pred cCCcEEEccCCC
Q 048831 662 KNLKTLSFSGCN 673 (1051)
Q Consensus 662 ~~L~~L~l~~~~ 673 (1051)
++|++|+-..+.
T Consensus 143 ~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 143 PSLKYLDGCDVD 154 (260)
T ss_pred hhhccccccccC
Confidence 666666655443
No 345
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.96 E-value=0.041 Score=59.46 Aligned_cols=127 Identities=22% Similarity=0.163 Sum_probs=70.2
Q ss_pred CccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHH
Q 048831 25 KELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLS 104 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 104 (1051)
+.+.-.....+++.++|...-...+.|.|.|..|.||||+++++...+...-...+.+.+..+..- .+.
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l-~~~---------- 172 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL-PGP---------- 172 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S---SCS----------
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee-ccc----------
Confidence 444444444455555554321234789999999999999999999877665122233332222110 000
Q ss_pred HHhccCCCcc-ccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEE-EEEeCCh
Q 048831 105 NLLKLGDISI-WHVDDGINIIGSRLRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRI-LITTRDK 169 (1051)
Q Consensus 105 ~l~~~~~~~~-~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~I-iiTTR~~ 169 (1051)
. ...... .........+...|+..+=.+|++.+.+.+.++.+... ..|..+ +-|..-.
T Consensus 173 --~-~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 173 --N-QIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp --S-EEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred --c-eEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 0 000001 13445567788888888889999999888776664433 346677 5555443
No 346
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.96 E-value=0.092 Score=52.23 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=26.1
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
-.+++|.|..|.|||||++.++..... ..+.+++
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~ 61 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILI 61 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEE
Confidence 368999999999999999999875443 3344444
No 347
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.94 E-value=0.036 Score=51.68 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 33 RLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 33 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+.+++-+.|...-....+|++.|.-|.||||+++.++..+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44444444443222346899999999999999999998653
No 348
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.94 E-value=0.017 Score=52.33 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=21.9
Q ss_pred EEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 51 IGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 51 v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
|-|+|.+|+|||++|+.++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999988766543
No 349
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.14 Score=59.74 Aligned_cols=154 Identities=19% Similarity=0.256 Sum_probs=84.2
Q ss_pred CCCCccccchhHHHHHHHHhc---CC-------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhc
Q 048831 22 KTVKELVGIESRLEKLRFLMG---TG-------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEK 91 (1051)
Q Consensus 22 ~~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 91 (1051)
....+.-|.|+..+++.+.++ .. ..-++=|.++|++|.|||.||++++....-.|-... -+.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iS----GS~---- 218 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS----GSD---- 218 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceecc----chh----
Confidence 345667899888877766654 22 123577999999999999999999976544332111 000
Q ss_pred CCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH----------------HHHHHHhcCCCC
Q 048831 92 EGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV----------------EQLQSLAGKRDW 155 (1051)
Q Consensus 92 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~ 155 (1051)
+.+... +. ..........+..++-++++++|.++.. ..+.+++.....
T Consensus 219 ----------FVemfV-Gv-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 219 ----------FVEMFV-GV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred ----------hhhhhc-CC-----CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 011111 00 0112223344444566789999977532 135666666665
Q ss_pred CCCCC-EEEE-EeCChhhhHh-----hCCCCcceEEcCCCChhHHHHHHHHhh
Q 048831 156 FGLGS-RILI-TTRDKQLLVA-----HEVDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 156 ~~~gs-~Iii-TTR~~~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
++... -|++ .|--.+|... -..+. .+.++..+-..-.+.+.-++
T Consensus 283 F~~~~gviviaaTNRpdVlD~ALlRpgRFDR--qI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 283 FGGNEGVIVIAATNRPDVLDPALLRPGRFDR--QILVELPDIKGREQILKVHA 333 (596)
T ss_pred CCCCCceEEEecCCCcccchHhhcCCCCcce--eeecCCcchhhHHHHHHHHh
Confidence 55323 2333 2322333322 12333 56666666666666666555
No 350
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.37 Score=53.93 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=25.6
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
+.++-+.+.|+.|.|||.||++++-+....|
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~atf 214 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGATF 214 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcceE
Confidence 3467788999999999999999998765543
No 351
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.88 E-value=0.14 Score=50.64 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=22.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
-.+++|.|..|.|||||++.++....
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999987543
No 352
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.88 E-value=0.037 Score=58.09 Aligned_cols=31 Identities=32% Similarity=0.466 Sum_probs=27.1
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
+...+|+|.|+.|.|||||++.+...++...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 5578999999999999999999998776643
No 353
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.87 E-value=0.21 Score=54.19 Aligned_cols=102 Identities=21% Similarity=0.219 Sum_probs=55.7
Q ss_pred hHHHHHHHHhcCCC-CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccC
Q 048831 32 SRLEKLRFLMGTGS-TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLG 110 (1051)
Q Consensus 32 ~~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~ 110 (1051)
.-...|...|..++ +.-+++-|+|+.|+||||||..+.......-..++|+. ..... -...+..++-..
T Consensus 36 TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID-~e~~l---------d~~~a~~lGvdl 105 (322)
T PF00154_consen 36 TGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID-AEHAL---------DPEYAESLGVDL 105 (322)
T ss_dssp -S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE-SSS------------HHHHHHTT--G
T ss_pred cCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec-Ccccc---------hhhHHHhcCccc
Confidence 33456667776333 44579999999999999999998887766555566665 22211 122233322100
Q ss_pred ----CCccccchhhHHHHHHhhCC-CeEEEEEeCCCCH
Q 048831 111 ----DISIWHVDDGINIIGSRLRQ-QKVLLVIDDVADV 143 (1051)
Q Consensus 111 ----~~~~~~~~~~~~~i~~~l~~-k~~LlVlDdv~~~ 143 (1051)
-..+...++....+.+.++. .--++|+|.|...
T Consensus 106 ~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 106 DRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp GGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred cceEEecCCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 01122334444555555544 4458999998654
No 354
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.87 E-value=0.12 Score=59.60 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 34 LEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 34 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34566666543334579999999999999999999887754333445554
No 355
>PRK08233 hypothetical protein; Provisional
Probab=94.86 E-value=0.022 Score=57.44 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..+|+|.|.+|.||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 356
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.82 E-value=0.11 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.|.|.|++|+||||+|+.+++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998865
No 357
>PRK04040 adenylate kinase; Provisional
Probab=94.79 E-value=0.032 Score=56.26 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=23.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.+|+|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999875
No 358
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.78 E-value=0.027 Score=58.24 Aligned_cols=26 Identities=42% Similarity=0.644 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
+..+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999876
No 359
>PRK03839 putative kinase; Provisional
Probab=94.72 E-value=0.026 Score=56.72 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.|.|.|++|+||||+|+++++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 360
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.70 E-value=0.13 Score=59.36 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 34 LEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 34 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
+..+.++|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34555666433334579999999999999999999876655433445554
No 361
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.0023 Score=65.24 Aligned_cols=96 Identities=27% Similarity=0.317 Sum_probs=70.1
Q ss_pred ccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEec
Q 048831 661 MKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYL 740 (1051)
Q Consensus 661 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L 740 (1051)
+.+.+.|+.+||.... ......++.|+.|.|+-|+++ ....+..++.|++|+|
T Consensus 18 l~~vkKLNcwg~~L~D------------------------Isic~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYL 70 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD------------------------ISICEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYL 70 (388)
T ss_pred HHHhhhhcccCCCccH------------------------HHHHHhcccceeEEeeccccc---cchhHHHHHHHHHHHH
Confidence 5566777777776432 122456788999999999886 3566788999999999
Q ss_pred cCCCceeccc--cccCCCCCCEEeccCCccccccCC--------CCCCCceEe
Q 048831 741 SGNNFVTLPA--SISGLFNLKYLELEDCKRLQSLPQ--------LPPNVIKVS 783 (1051)
Q Consensus 741 ~~n~l~~lp~--~~~~l~~L~~L~l~~c~~L~~lp~--------lp~~L~~L~ 783 (1051)
..|.|.++.. -+.++|+|+.|+|..||--..-+. ..|+|+.|+
T Consensus 71 RkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 71 RKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999887754 458999999999999885544331 335666664
No 362
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.68 E-value=0.19 Score=51.42 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=34.4
Q ss_pred HHHHHHhhCCCeEEEEEeCC----C--CHHHHHHHhcCCCCCCCCCEEEEEeCChhhhHhh
Q 048831 121 INIIGSRLRQQKVLLVIDDV----A--DVEQLQSLAGKRDWFGLGSRILITTRDKQLLVAH 175 (1051)
Q Consensus 121 ~~~i~~~l~~k~~LlVlDdv----~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~ 175 (1051)
.-.|.+.+...+-+|+-|+= | +.+.+-.+..... ...|..||+.|.|..++..+
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhC
Confidence 44566778888889999964 2 2233333333221 13478999999999987753
No 363
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.66 E-value=0.18 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+..|+|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567999999999999999987654
No 364
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.26 Score=53.21 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=41.3
Q ss_pred CccccchhHHHHHHHHhcCC---------C---CCeeEEEEEcCCcchHHHHHHHHHHHHhccccce
Q 048831 25 KELVGIESRLEKLRFLMGTG---------S---TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYAS 79 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~---------~---~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 79 (1051)
.++-|.+..++++.++.... + ...+-|.++|++|.|||-||++++.+....|-.+
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 45667788888877665321 0 2457799999999999999999999877776543
No 365
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.65 E-value=0.087 Score=52.83 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.6
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
-.+++|.|..|.|||||++.++....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999987543
No 366
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.62 E-value=0.032 Score=57.48 Aligned_cols=27 Identities=44% Similarity=0.656 Sum_probs=24.1
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
...+|+|.|++|.||||||++++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998665
No 367
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.60 E-value=0.055 Score=58.65 Aligned_cols=60 Identities=28% Similarity=0.266 Sum_probs=42.1
Q ss_pred CCCCccccchhHHHH---HHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEE
Q 048831 22 KTVKELVGIESRLEK---LRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSF 81 (1051)
Q Consensus 22 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 81 (1051)
.....+||.....+. +.+++..+.-.-+.|.|.|++|.|||+||.+++..+....+....
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 346789999866654 456665554345899999999999999999999999887765544
No 368
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.59 E-value=0.028 Score=55.79 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..+|+|-||=|+||||||+++++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999999876
No 369
>PRK00625 shikimate kinase; Provisional
Probab=94.59 E-value=0.029 Score=55.53 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.|.|+||.|+||||+|+.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 370
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.58 E-value=0.054 Score=54.69 Aligned_cols=94 Identities=22% Similarity=0.221 Sum_probs=52.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHh-ccCCCccccchhhHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLL-KLGDISIWHVDDGINIIGSR 127 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~~~~~~~~~~i~~~ 127 (1051)
..++|.|..|.||||+++++...+.... ..+.+.+..+....... .. ++. ..............+.+...
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~ied~~E~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDE-RIITIEDTAELQLPHPN-------WV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEECCccccCCCCCC-------EE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 6899999999999999999988765432 23333221111100000 00 000 00000011122345566677
Q ss_pred hCCCeEEEEEeCCCCHHHHHHHhc
Q 048831 128 LRQQKVLLVIDDVADVEQLQSLAG 151 (1051)
Q Consensus 128 l~~k~~LlVlDdv~~~~~~~~l~~ 151 (1051)
++..+=.++++.+.+.+.+..+..
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~a 120 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQA 120 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHHH
Confidence 777788889999988876654443
No 371
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.57 E-value=0.097 Score=53.59 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=27.6
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhccccc
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYA 78 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~ 78 (1051)
+...+|.++||+|.||||..+.++..+..++..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 446789999999999999999999877776653
No 372
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.55 E-value=0.066 Score=51.99 Aligned_cols=88 Identities=24% Similarity=0.241 Sum_probs=45.2
Q ss_pred EEcCCcchHHHHHHHHHHHHhccccceEEEe---ehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhC
Q 048831 53 IWGMGGLGKTTLARVVYDLISHEFYASSFLA---DVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLR 129 (1051)
Q Consensus 53 I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~---~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~ 129 (1051)
|.|++|.||||+|+.++.++. | ..+. -+++..... ..+.+++...+..+.. ...+-....+.+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is~~~llr~~~~~~---s~~g~~i~~~l~~g~~---vp~~~v~~ll~~~l~ 69 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHISVGDLLREEIKSD---SELGKQIQEYLDNGEL---VPDELVIELLKERLE 69 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEEHHHHHHHHHHTT---SHHHHHHHHHHHTTSS-----HHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceechHHHHHHHHhhh---hHHHHHHHHHHHhhcc---chHHHHHHHHHHHHh
Confidence 689999999999999998752 2 2222 112221111 1222333333332221 122334455555554
Q ss_pred C--CeEEEEEeCC-CCHHHHHHHhc
Q 048831 130 Q--QKVLLVIDDV-ADVEQLQSLAG 151 (1051)
Q Consensus 130 ~--k~~LlVlDdv-~~~~~~~~l~~ 151 (1051)
. ..--+|||+. .+.+|.+.+..
T Consensus 70 ~~~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 70 QPPCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp SGGTTTEEEEESB-SSHHHHHHHHH
T ss_pred hhcccceeeeeeccccHHHHHHHHH
Confidence 2 2345679998 55566555543
No 373
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.55 E-value=0.1 Score=52.00 Aligned_cols=25 Identities=36% Similarity=0.686 Sum_probs=22.1
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
-.+++|.|..|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998754
No 374
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.54 E-value=0.032 Score=55.72 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
...|.|.|++|+||||+|+++++++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999863
No 375
>COG4240 Predicted kinase [General function prediction only]
Probab=94.54 E-value=0.15 Score=50.88 Aligned_cols=85 Identities=19% Similarity=0.286 Sum_probs=47.2
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCC-CccccchhhHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGD-ISIWHVDDGINII 124 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~~~~~~~~~~~~i 124 (1051)
++.-+++|.|+-|.||||+|..++..+...+-.+.-...+...+-.+.....+.++. .-+....+ ....+..-+.+.+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~-npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQV-NPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhc-CchhcccCCCCCCchHHHHHHH
Confidence 567899999999999999999999987776632322222333222222212233332 11222222 2334555555555
Q ss_pred HHhhCCC
Q 048831 125 GSRLRQQ 131 (1051)
Q Consensus 125 ~~~l~~k 131 (1051)
....+++
T Consensus 127 nai~~g~ 133 (300)
T COG4240 127 NAIARGG 133 (300)
T ss_pred HHHhcCC
Confidence 5555555
No 376
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.076 Score=54.71 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=42.9
Q ss_pred CCCCCCccccchhHHHHHHHHhcCC-----------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTG-----------STDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
+.....+.=|.+..+++|.+...-. -...+-|.+||.+|.|||-||++|+++-...|
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 3334456678899999998776431 13456788999999999999999999766655
No 377
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.44 E-value=0.077 Score=58.21 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEEcCCcchHHHHHHHHHHHHh
Q 048831 51 IGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 51 v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+++.|+.|.||||+|+.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998775
No 378
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.43 E-value=0.2 Score=49.87 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
++.+.|++|.||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999999999877655
No 379
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.43 E-value=0.094 Score=58.00 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.+..+|..+-..-.++-|+|++|+|||++|.+++...
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 4445554332445789999999999999999988654
No 380
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.42 E-value=0.28 Score=53.05 Aligned_cols=36 Identities=19% Similarity=0.064 Sum_probs=27.3
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcc-ccceEEEe
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHE-FYASSFLA 83 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 83 (1051)
-.++.|.|.+|+||||+|.+++.....+ -..++|+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 4689999999999999999988776544 33444544
No 381
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.41 E-value=0.1 Score=55.45 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=35.2
Q ss_pred HHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 37 LRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 37 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
+..+|..+-..-+++=|+|+.|.||||+|.+++-.....-..++|+.
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 34445422245689999999999999999888876666666777876
No 382
>PRK06547 hypothetical protein; Provisional
Probab=94.39 E-value=0.042 Score=54.40 Aligned_cols=27 Identities=33% Similarity=0.270 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
....+|+|.|++|.||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999864
No 383
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.39 E-value=0.2 Score=51.04 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.5
Q ss_pred EEEEEcCCcchHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
+++|+|+.|.|||||+++++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999874
No 384
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.38 E-value=0.063 Score=59.14 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHH
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.|.++|..+=..-.+.-|+|.+|+|||+|+.+++-
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHH
Confidence 44455543324457888999999999999988764
No 385
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.36 E-value=0.09 Score=56.06 Aligned_cols=60 Identities=27% Similarity=0.194 Sum_probs=45.7
Q ss_pred CCCCCCccccchhHHHH---HHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccce
Q 048831 20 EPKTVKELVGIESRLEK---LRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYAS 79 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 79 (1051)
.-.....+||.....+. +.+++..+.-.-+.|.|.|++|.|||+||..++..+...-+++
T Consensus 34 ~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 34 AKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred EeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 33456789998766553 5677766554558999999999999999999999887765443
No 386
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.34 E-value=0.66 Score=51.36 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=21.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.++|+++|+.|+||||-..+++.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 68999999999999987777766554
No 387
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.33 E-value=0.21 Score=62.88 Aligned_cols=211 Identities=17% Similarity=0.149 Sum_probs=104.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccc----cceEEEeehhhhhhcCCCHH--HHHHHHHHHHhccCCCccccchhhHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEF----YASSFLADVRERFEKEGSVI--SLQKQLLSNLLKLGDISIWHVDDGIN 122 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~~~~~~~~~~~~~~~~--~l~~~ll~~l~~~~~~~~~~~~~~~~ 122 (1051)
.-+.|+|-+|.||||..+.++-....+. +..+++. +........... .+..-+...+.... .......
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~-l~~~~~~~~~~~q~~~~~~l~~~~~~~~-----~~~~~~~ 296 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLL-LNAFALARKFEKQLSLIDYLAEELFSQG-----IAKQLIE 296 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeee-chhHHHhhhhHhhccHHHHHHHHHhccC-----CcchhhH
Confidence 4688999999999999999886443322 1222222 111110000001 12222222222111 1122222
Q ss_pred HHHHhhCCCeEEEEEeCCCCHHH---------HHHHhcCCCCCCCCCEEEEEeCChhhhHhhCCCCcceEEcCCCChhHH
Q 048831 123 IIGSRLRQQKVLLVIDDVADVEQ---------LQSLAGKRDWFGLGSRILITTRDKQLLVAHEVDEEHILNLDVLNDDEA 193 (1051)
Q Consensus 123 ~i~~~l~~k~~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea 193 (1051)
...+.++..++++++|.++.... +..+.+. -+.+++|+|.|....-..... ....++..+.++.-
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~--f~~~ei~~~~~~~i 370 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKG--FAVFEIYKFLDLQI 370 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhh--hhhccchhhhHHHH
Confidence 23578889999999999876532 2233332 358899999998654332221 12456666665544
Q ss_pred HHHHH--------HhhhcCCCCc--hHHHHH---HHHHHHhcCCCchHHHHHHHHhc------CCCHHHHHHHHHHhhcC
Q 048831 194 LQLFS--------MKAFKSHQPV--EEYVEL---SKRVLNYASGLPLALKVLGSFLI------GRSVDQWRSALERLKRD 254 (1051)
Q Consensus 194 ~~Lf~--------~~a~~~~~~~--~~~~~~---~~~i~~~~~G~PLal~~~g~~L~------~~~~~~w~~~l~~l~~~ 254 (1051)
..... ...++..... .....+ ..+-++.....|++|.+.+..-. ....+-++.+++.+-..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~ 450 (824)
T COG5635 371 NQFILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGR 450 (824)
T ss_pred HHHHHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhc
Confidence 32222 1112222111 011111 22334444778999988874432 23456666777665543
Q ss_pred CCchHHHHHHHhccCCC
Q 048831 255 PSNKIMSILQISFDGLQ 271 (1051)
Q Consensus 255 ~~~~i~~~l~~sy~~L~ 271 (1051)
.+..-...+...|+.+.
T Consensus 451 ~d~~~~~~~~~~~~~~~ 467 (824)
T COG5635 451 EDETRGIKWSKTYAKLT 467 (824)
T ss_pred cchhhhhcchhhhcccc
Confidence 33222223344444443
No 388
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.32 E-value=0.15 Score=50.79 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=25.6
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
-.+++|.|..|.|||||++.++..... ..+.+.+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 61 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRL 61 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEE
Confidence 358999999999999999999875433 2334443
No 389
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.28 E-value=0.24 Score=53.96 Aligned_cols=89 Identities=24% Similarity=0.223 Sum_probs=54.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccc--cceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEF--YASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGS 126 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 126 (1051)
+.+.|.|..|.||||+++++...+.... ...+.+.+..+..-....... +. ... ........++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~~--~~~---~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------LR--TSD---DAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------EE--ecC---CCCCHHHHHHH
Confidence 5688999999999999999998876532 223333333332110000000 00 000 11245667888
Q ss_pred hhCCCeEEEEEeCCCCHHHHHHHh
Q 048831 127 RLRQQKVLLVIDDVADVEQLQSLA 150 (1051)
Q Consensus 127 ~l~~k~~LlVlDdv~~~~~~~~l~ 150 (1051)
.|+..+=.||+..+...+.++.+.
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHHH
Confidence 888888889999998887766543
No 390
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.26 E-value=0.25 Score=56.95 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=24.6
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..++|+|+|++|+||||++.+++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999998866544
No 391
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.24 E-value=0.2 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.|.|.|++|.||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998765
No 392
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.22 Score=50.53 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.6
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
-.+++|.|..|.|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999864
No 393
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.22 E-value=0.13 Score=53.73 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=28.0
Q ss_pred HHHHHhcCC-CCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 36 KLRFLMGTG-STDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 36 ~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.|+..+..+ ..++-+++++|.+|+||.-.|+.+++..
T Consensus 97 alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 97 ALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 344444433 3567799999999999999999999854
No 394
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.22 E-value=0.063 Score=53.66 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.6
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..+|+|.|++|.||||+|++++..+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987543
No 395
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.13 Score=51.83 Aligned_cols=60 Identities=22% Similarity=0.161 Sum_probs=34.7
Q ss_pred hHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HhcCCC-CCCCCCEEEEEeCChhhhHhhCCCC
Q 048831 120 GINIIGSRLRQQKVLLVIDDVADVEQLQS---LAGKRD-WFGLGSRILITTRDKQLLVAHEVDE 179 (1051)
Q Consensus 120 ~~~~i~~~l~~k~~LlVlDdv~~~~~~~~---l~~~~~-~~~~gs~IiiTTR~~~~~~~~~~~~ 179 (1051)
....+.+.+--++-+.|||..|+--++++ +..... ...+|+.++|.|..+.++.....+.
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 34556666666778999998765332222 211111 1235777888888777776544333
No 396
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=0.73 Score=49.92 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcc--CCCCC-CCccccchhHHHHHHHHhcCCC-------CCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 5 FIEEIVNVISSKIH--TEPKT-VKELVGIESRLEKLRFLMGTGS-------TDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 5 ~i~~i~~~i~~~l~--~~~~~-~~~~vGr~~~~~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+++++++.|.+.++ ..+.. ...-+-...-.++|.++++.+. .+..||.++|.-|.||||...+++..++.
T Consensus 48 lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kk 127 (483)
T KOG0780|consen 48 LVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKK 127 (483)
T ss_pred HHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHh
Confidence 56677777777766 22221 1111111233456777776532 45789999999999999999888776655
Q ss_pred cccceEEE
Q 048831 75 EFYASSFL 82 (1051)
Q Consensus 75 ~f~~~~~~ 82 (1051)
+-...+.+
T Consensus 128 kG~K~~Lv 135 (483)
T KOG0780|consen 128 KGYKVALV 135 (483)
T ss_pred cCCceeEE
Confidence 43333333
No 397
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.16 E-value=0.044 Score=55.58 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
+..+|+|.|++|+||||+|+.+++.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999765
No 398
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.14 E-value=0.024 Score=34.39 Aligned_cols=21 Identities=48% Similarity=0.727 Sum_probs=14.0
Q ss_pred cCcEEeccCCCceeccccccC
Q 048831 734 SLKELYLSGNNFVTLPASISG 754 (1051)
Q Consensus 734 ~L~~L~L~~n~l~~lp~~~~~ 754 (1051)
+|++|+|++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766443
No 399
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.13 E-value=0.07 Score=52.57 Aligned_cols=116 Identities=12% Similarity=0.125 Sum_probs=57.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR 127 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 127 (1051)
-.+++|.|..|.|||||.+.++..... ..+.+++....- ..... .. .....+.-.. ....-+...-.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~--~~~~~-~~---~~~~~i~~~~--qLS~G~~qrl~lara 96 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKEV--SFASP-RD---ARRAGIAMVY--QLSVGERQMVEIARA 96 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEC--CcCCH-HH---HHhcCeEEEE--ecCHHHHHHHHHHHH
Confidence 368999999999999999999875432 344455432110 00000 00 0000000000 001111222234455
Q ss_pred hCCCeEEEEEeCCCC---HHHHHHHhcCCCC-CCCCCEEEEEeCChhhh
Q 048831 128 LRQQKVLLVIDDVAD---VEQLQSLAGKRDW-FGLGSRILITTRDKQLL 172 (1051)
Q Consensus 128 l~~k~~LlVlDdv~~---~~~~~~l~~~~~~-~~~gs~IiiTTR~~~~~ 172 (1051)
+..++-++++|+... ....+.+...+.. ...|..||++|.+....
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 566777888998632 2222222222111 12467889999887643
No 400
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.13 E-value=0.098 Score=58.31 Aligned_cols=104 Identities=21% Similarity=0.320 Sum_probs=58.7
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIG 125 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 125 (1051)
..++=+-|||..|.|||.|.-.+|+.+...-..++.+. ....++.+.+...- ...+....+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh---------~Fm~~vh~~l~~~~---------~~~~~l~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH---------EFMLDVHSRLHQLR---------GQDDPLPQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc---------HHHHHHHHHHHHHh---------CCCccHHHHH
Confidence 34678999999999999999999997654322221111 11123333332221 1223345566
Q ss_pred HhhCCCeEEEEEeCC--CCHH---HHHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 126 SRLRQQKVLLVIDDV--ADVE---QLQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 126 ~~l~~k~~LlVlDdv--~~~~---~~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
+.+.++..||.||.+ .+.. -+..+...+- ..| -|||+|.+..
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~g-vvlVaTSN~~ 168 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRG-VVLVATSNRP 168 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCC-CEEEecCCCC
Confidence 667777779999976 3332 2444444322 334 4566665654
No 401
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.11 E-value=0.12 Score=58.91 Aligned_cols=40 Identities=35% Similarity=0.462 Sum_probs=29.5
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRE 87 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~ 87 (1051)
-+.++|.|.+|+|||||+..++.....+....+.+..+.+
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE 183 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE 183 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc
Confidence 3679999999999999999988776655444444444444
No 402
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.11 E-value=0.045 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
++|.+.|++|.||||+|+++......
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 58999999999999999999887543
No 403
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.10 E-value=1.1 Score=49.84 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhcc--CCCCCC---CccccchhHHHHHHHHhcCCC-------CCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 5 FIEEIVNVISSKIH--TEPKTV---KELVGIESRLEKLRFLMGTGS-------TDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 5 ~i~~i~~~i~~~l~--~~~~~~---~~~vGr~~~~~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
++++..+.|.++.- .++... ..++ .--.++|.++|..+. ..+.+|.++|.-|.||||.|-+++..+
T Consensus 47 vVk~fi~~ikera~g~ev~~~l~p~q~~i--KiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~l 124 (451)
T COG0541 47 VVKDFIKRIKERALGEEVPKGLTPGQQFI--KIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYL 124 (451)
T ss_pred HHHHHHHHHHHHhccccCCCCCCHHHHHH--HHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHH
Confidence 45555666665554 222211 1122 123456777776421 246799999999999999999999887
Q ss_pred hccccceEEEe
Q 048831 73 SHEFYASSFLA 83 (1051)
Q Consensus 73 ~~~f~~~~~~~ 83 (1051)
+. +...+.++
T Consensus 125 kk-~~~kvllV 134 (451)
T COG0541 125 KK-KGKKVLLV 134 (451)
T ss_pred HH-cCCceEEE
Confidence 77 34444433
No 404
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.08 E-value=0.07 Score=59.41 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=38.3
Q ss_pred CccccchhHHHHHHHHhcCC------------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 25 KELVGIESRLEKLRFLMGTG------------STDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~------------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
.++||.+...+.+.-.+... .-..+.|.++|++|+|||++|++++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45889988887775444321 11246789999999999999999999875544
No 405
>PRK13947 shikimate kinase; Provisional
Probab=94.05 E-value=0.043 Score=54.68 Aligned_cols=26 Identities=35% Similarity=0.403 Sum_probs=22.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
.|.|.|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999887543
No 406
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.05 E-value=0.074 Score=53.59 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=28.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehh
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVR 86 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~ 86 (1051)
.|+|+|-||+||||+|..++.++..+-...+.+.+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaD 38 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDAD 38 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 5899999999999999997777666544555555443
No 407
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.04 E-value=0.06 Score=53.91 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=23.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
+|+|.|.+|.||||+|+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877643
No 408
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.02 E-value=0.18 Score=62.29 Aligned_cols=113 Identities=15% Similarity=0.190 Sum_probs=56.9
Q ss_pred CCeEEEEEeCCCC---HHHHHH----HhcCCCCCCCCCEEEEEeCChhhhHhhCC-CCcceEEcCCCChhHHHHHHHHhh
Q 048831 130 QQKVLLVIDDVAD---VEQLQS----LAGKRDWFGLGSRILITTRDKQLLVAHEV-DEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 130 ~k~~LlVlDdv~~---~~~~~~----l~~~~~~~~~gs~IiiTTR~~~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
..+-|+++|.... ...... +...+. ..|+.+|+||.+..+...... .....+.+ .++. +.... .+-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~-~~d~-~~l~p--~Yk 474 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASV-LFDE-ETLSP--TYK 474 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEE-EEcC-CCCce--EEE
Confidence 4788999999842 222222 222221 357899999999876433211 11111111 1111 11110 111
Q ss_pred hcCCCCchHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCHHHHHHHHHHhh
Q 048831 202 FKSHQPVEEYVELSKRVLNYASGLPLALKVLGSFLIGRSVDQWRSALERLK 252 (1051)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~~L~~~~~~~w~~~l~~l~ 252 (1051)
...+.+.. ..|-+|++++ |+|-.+..-|..+.+....+++.+++.+.
T Consensus 475 l~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 475 LLKGIPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred ECCCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11222222 2345566655 78888887777776655556666666554
No 409
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.02 E-value=0.2 Score=57.29 Aligned_cols=40 Identities=35% Similarity=0.387 Sum_probs=28.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRE 87 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~ 87 (1051)
-+.++|.|.+|+|||||+..++.....+...++.+..+.+
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGE 182 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGE 182 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCc
Confidence 3679999999999999999988876644334443443433
No 410
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.00 E-value=0.1 Score=55.99 Aligned_cols=25 Identities=28% Similarity=0.390 Sum_probs=21.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+-|.++|+.|+|||++++.......
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CcEEEECCCCCchhHHHHhhhccCC
Confidence 5689999999999999999887543
No 411
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.00 E-value=0.26 Score=50.17 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.3
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
-.+++|.|..|.|||||.+.++...
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 412
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.99 E-value=0.049 Score=56.23 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=21.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.++++|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999884
No 413
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.98 E-value=0.1 Score=58.28 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=53.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccc--eE-EEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYA--SS-FLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINII 124 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~-~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 124 (1051)
...|.|+|+.|.||||+++++...+....+. .+ .+.+-.+ +...+. .. ....+. +... ..+.......+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-~~~~~~----~~-~~~~v~-Q~~v-~~~~~~~~~~l 205 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-FVYDEI----ET-ISASVC-QSEI-PRHLNNFAAGV 205 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-Eecccc----cc-ccceee-eeec-cccccCHHHHH
Confidence 3689999999999999999999877543322 22 2221111 100000 00 000000 0000 01122345667
Q ss_pred HHhhCCCeEEEEEeCCCCHHHHHHHh
Q 048831 125 GSRLRQQKVLLVIDDVADVEQLQSLA 150 (1051)
Q Consensus 125 ~~~l~~k~~LlVlDdv~~~~~~~~l~ 150 (1051)
+..|+..+-.+++..+.+.+..+...
T Consensus 206 ~~aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 206 RNALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HHHhccCCCEEeeeeeCCHHHHHHHH
Confidence 77888899999999998888765443
No 414
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.98 E-value=0.076 Score=54.28 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=28.5
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
....+|+|.|++|.||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3457999999999999999999998775443334444
No 415
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.98 E-value=0.077 Score=50.49 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
++|.|+|..|+|||||++.+.+.+..+-
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 4799999999999999999999887543
No 416
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.97 E-value=0.11 Score=54.43 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc
Q 048831 34 LEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY 77 (1051)
Q Consensus 34 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 77 (1051)
-.++...+....++..+|+|+|.+|+|||||..++..++..+-.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 34566666666677889999999999999999999887765533
No 417
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.3 Score=56.60 Aligned_cols=153 Identities=19% Similarity=0.222 Sum_probs=81.5
Q ss_pred ccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCC
Q 048831 26 ELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGS 94 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 94 (1051)
.+-|-...+..+..+... +-...+.+.++|++|+|||-+|++|+++... .+|..+..+.
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a----~~~~i~~pel------ 254 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA----FLFLINGPEL------ 254 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc----eeEecccHHH------
Confidence 445566666666555431 1145688999999999999999999987652 3344433321
Q ss_pred HHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCC-eEEEEEeCCCCHH------------HHHHHhcCCCCCCCCCE
Q 048831 95 VISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQ-KVLLVIDDVADVE------------QLQSLAGKRDWFGLGSR 161 (1051)
Q Consensus 95 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k-~~LlVlDdv~~~~------------~~~~l~~~~~~~~~gs~ 161 (1051)
++...++ ....+...+.+..+.+ +.++.+|+++..- -...+.....+.++.++
T Consensus 255 --------i~k~~gE------te~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~ 320 (693)
T KOG0730|consen 255 --------ISKFPGE------TESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAK 320 (693)
T ss_pred --------HHhcccc------hHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCc
Confidence 1211100 1123344455555666 7888888774321 12223333333343343
Q ss_pred E--EEEeCChhhhHh-hC-CCCcceEEcCCCChhHHHHHHHHhhh
Q 048831 162 I--LITTRDKQLLVA-HE-VDEEHILNLDVLNDDEALQLFSMKAF 202 (1051)
Q Consensus 162 I--iiTTR~~~~~~~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~ 202 (1051)
+ |-|||.+.-... .. ..-.+-+++.-.+..+-.++++...-
T Consensus 321 vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k 365 (693)
T KOG0730|consen 321 VIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTK 365 (693)
T ss_pred EEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHH
Confidence 3 335554422111 11 01122577777777777777766553
No 418
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.95 E-value=0.067 Score=52.69 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=20.9
Q ss_pred EEEEcCCcchHHHHHHHHHHHHhc
Q 048831 51 IGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 51 v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
|.|+|..|+|||||++++++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999998754
No 419
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.94 E-value=0.29 Score=49.35 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=24.1
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..++.|.|.+|.||||+|+.+...+..
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999987653
No 420
>PRK05439 pantothenate kinase; Provisional
Probab=93.90 E-value=0.083 Score=57.20 Aligned_cols=29 Identities=38% Similarity=0.469 Sum_probs=25.3
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+...+|+|.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999886654
No 421
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.89 E-value=0.42 Score=48.59 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEEcCCcchHHHHHHHHHHHH
Q 048831 51 IGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 51 v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
|.|.|++|+||||+|+.+++++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998864
No 422
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.86 E-value=1.6 Score=47.39 Aligned_cols=167 Identities=14% Similarity=0.060 Sum_probs=86.8
Q ss_pred HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc--------c-ccceEEEeehhhhhhcCCCHHHHHHHHHHH
Q 048831 35 EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH--------E-FYASSFLADVRERFEKEGSVISLQKQLLSN 105 (1051)
Q Consensus 35 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~--------~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 105 (1051)
+.+...+..+ .-.++..++|..|+||+++|+++...+-. . .+.-+.+.+..+ .....+-..++...
T Consensus 6 ~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g----~~i~vd~Ir~l~~~ 80 (299)
T PRK07132 6 KFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD----KDLSKSEFLSAINK 80 (299)
T ss_pred HHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC----CcCCHHHHHHHHHH
Confidence 4445555432 23477889999999999999999987611 1 110111111000 00001111111111
Q ss_pred HhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhHhhCCCCcce
Q 048831 106 LLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE--QLQSLAGKRDWFGLGSRILITTRD-KQLLVAHEVDEEHI 182 (1051)
Q Consensus 106 l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~-~~~~~~~~~~~~~~ 182 (1051)
+.-. ..-.+.+=++|+|+++... ....++..+..-.+.+.+|++|.+ ..+..... ....+
T Consensus 81 ~~~~----------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~-SRc~~ 143 (299)
T PRK07132 81 LYFS----------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIV-SRCQV 143 (299)
T ss_pred hccC----------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHH-hCeEE
Confidence 1100 0001456678888886553 355566665555667777766644 33332211 12238
Q ss_pred EEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHH
Q 048831 183 LNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKV 231 (1051)
Q Consensus 183 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 231 (1051)
+++.+++.++..+.+.... . .+ +.+..++..++|.--|++.
T Consensus 144 ~~f~~l~~~~l~~~l~~~~----~-~~---~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSKN----K-EK---EYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EECCCCCHHHHHHHHHHcC----C-Ch---hHHHHHHHHcCCHHHHHHH
Confidence 9999999999988776531 1 11 3355566666662244443
No 423
>PRK14528 adenylate kinase; Provisional
Probab=93.84 E-value=0.23 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
+.|.|.|++|.||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998765
No 424
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.84 E-value=0.14 Score=62.26 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
-..|+|+|..|.||||||+.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999875
No 425
>PTZ00035 Rad51 protein; Provisional
Probab=93.83 E-value=0.17 Score=56.14 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 35 EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 35 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..|.++|..+-..-.++.|+|.+|+||||++..++-..
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 45556665433445799999999999999998887543
No 426
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.52 Score=57.73 Aligned_cols=104 Identities=12% Similarity=0.168 Sum_probs=64.3
Q ss_pred ccccchhHHHHHHHHhcCC---C---CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHH
Q 048831 26 ELVGIESRLEKLRFLMGTG---S---TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQ 99 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~~---~---~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 99 (1051)
..+|.++.+..|-+.+... . ...-.+.+.|+.|+|||-||++++..+-+..+.-+-+. .++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-mse~----------- 630 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-MSEF----------- 630 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-hhhh-----------
Confidence 4778888888877666531 1 13567889999999999999999998866555444443 3221
Q ss_pred HHHHHHHhccCCCccccchhhHHHHHHhhCCCeE-EEEEeCCCCHH
Q 048831 100 KQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKV-LLVIDDVADVE 144 (1051)
Q Consensus 100 ~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~-LlVlDdv~~~~ 144 (1051)
.+ .+.+. +..... --.+....+.+.++++++ +|.||||+..+
T Consensus 631 ~e-vskli-gsp~gy-vG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 631 QE-VSKLI-GSPPGY-VGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hh-hhhcc-CCCccc-ccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 11 12221 111111 112333467777888775 77789997654
No 427
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.83 E-value=0.041 Score=52.29 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
.|+|+|+.|+|||||++.++..+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999865444
No 428
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.83 E-value=0.13 Score=60.90 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=41.8
Q ss_pred CCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 23 TVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
....++|+...++++.+.+..-......|.|+|..|+|||++|+++...-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 466799999999988888765444446799999999999999999998543
No 429
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.81 E-value=0.46 Score=54.95 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=22.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
-.++.|.|.+|+|||++|..++..+.
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a 219 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVA 219 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999986654
No 430
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.79 E-value=0.068 Score=53.87 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=29.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
.|++.|+|+.|+|||||++++.......|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 47899999999999999999999988888544443
No 431
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.77 E-value=0.2 Score=58.40 Aligned_cols=100 Identities=19% Similarity=0.162 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCc
Q 048831 34 LEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDIS 113 (1051)
Q Consensus 34 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 113 (1051)
++.+..++... ..+|.|+|+.|.||||+..++.+.+...-...+.+.+-.+ +...+. .+.. ..
T Consensus 231 ~~~l~~~~~~~---~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE-~~~~~~---------~q~~----v~ 293 (486)
T TIGR02533 231 LSRFERLIRRP---HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE-YQIEGI---------GQIQ----VN 293 (486)
T ss_pred HHHHHHHHhcC---CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee-eecCCC---------ceEE----Ec
Confidence 34455555322 3589999999999999999888776543222233322111 111111 0000 00
Q ss_pred cccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHHh
Q 048831 114 IWHVDDGINIIGSRLRQQKVLLVIDDVADVEQLQSLA 150 (1051)
Q Consensus 114 ~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~~~~l~ 150 (1051)
...-......++..|+..+=.|++.++.+.+......
T Consensus 294 ~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~ 330 (486)
T TIGR02533 294 PKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAI 330 (486)
T ss_pred cccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHH
Confidence 0001234567888888889899999999888655433
No 432
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.77 E-value=0.38 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=21.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
++++|.|+.|.||||+++.+...+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998643
No 433
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.76 E-value=0.0038 Score=63.65 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCC
Q 048831 704 LSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNN 744 (1051)
Q Consensus 704 l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~ 744 (1051)
+..++.|++|+|..|.+.+..-..-+.++|+|+.|.|..|.
T Consensus 59 l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 59 LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 34455555555555555432223345566666666666654
No 434
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.76 E-value=0.24 Score=56.19 Aligned_cols=40 Identities=35% Similarity=0.462 Sum_probs=29.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRE 87 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~ 87 (1051)
-+.++|.|.+|+|||||+..+......+...++.+..+.+
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGE 182 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE 182 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 3679999999999999999998876554444544454544
No 435
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.74 E-value=0.15 Score=56.09 Aligned_cols=109 Identities=19% Similarity=0.172 Sum_probs=60.5
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcC-CCHHHHHHHHHHHHhccCCCccccchhhHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKE-GSVISLQKQLLSNLLKLGDISIWHVDDGINIIGS 126 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 126 (1051)
...++|.|..|.||||+++++...+.... ..+.+.+..+..... .. .. +...............+.+..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~-~~--------l~~~~~~~~~~~~~~~~~l~~ 213 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNY-VH--------LFYSKGGQGLAKVTPKDLLQS 213 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCE-EE--------EEecCCCCCcCccCHHHHHHH
Confidence 36899999999999999999987665433 233333222211100 00 00 000000001112234556677
Q ss_pred hhCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCE-EEEEeCChh
Q 048831 127 RLRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSR-ILITTRDKQ 170 (1051)
Q Consensus 127 ~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~-IiiTTR~~~ 170 (1051)
.++..+=.+|+|.+...+.++.+... . .|.. ++.|+....
T Consensus 214 ~Lr~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 214 CLRMRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAGS 254 (308)
T ss_pred HhcCCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCCC
Confidence 78888888999999887766544332 2 2332 466766554
No 436
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.74 E-value=0.085 Score=58.80 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=38.7
Q ss_pred CccccchhHHHHHHHHhcC---------CC---CCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 25 KELVGIESRLEKLRFLMGT---------GS---TDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~---------~~---~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
.+++|.+...+.+...+.. +. ...+.|.+.|++|+|||++|++++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 3588999888887666532 00 1146789999999999999999998765443
No 437
>PRK14531 adenylate kinase; Provisional
Probab=93.72 E-value=0.35 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
+.|.|.|++|.||||+|+.++.++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998875
No 438
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.71 E-value=0.72 Score=56.59 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=38.5
Q ss_pred CCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 23 TVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
....++|....++++.+.+..-.....-|.|+|..|+||+++|+++.+.-
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 45679999988888777665432223458899999999999999998753
No 439
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.70 E-value=0.22 Score=51.40 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.9
Q ss_pred EEEEcCCcchHHHHHHHHHHHH
Q 048831 51 IGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 51 v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 440
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.69 E-value=0.099 Score=50.23 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=27.8
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccccce
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEFYAS 79 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 79 (1051)
...+|-++|.+|.||||||.+++.++.......
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~ 54 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHV 54 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 457999999999999999999999887765433
No 441
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.67 E-value=0.2 Score=58.86 Aligned_cols=50 Identities=22% Similarity=0.190 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 34 LEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 34 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
+..+.++|..+=..-.++.|.|++|+||||||.+++.....+-..++++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45666777654445579999999999999999999887655545555554
No 442
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.64 E-value=0.047 Score=54.61 Aligned_cols=23 Identities=39% Similarity=0.716 Sum_probs=21.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 443
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.62 E-value=0.41 Score=56.79 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=39.1
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
........++|....++++.+.+..-...-.-|.|+|..|+||+++|+++...
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 34456678999998888777666432222245889999999999999997653
No 444
>PRK14529 adenylate kinase; Provisional
Probab=93.60 E-value=0.31 Score=50.28 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=21.0
Q ss_pred EEEEcCCcchHHHHHHHHHHHHh
Q 048831 51 IGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 51 v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
|.|.|++|+||||+|+.++.++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78899999999999999998764
No 445
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=1.1 Score=52.89 Aligned_cols=48 Identities=25% Similarity=0.300 Sum_probs=36.2
Q ss_pred ccchhHHHHHHHHhcCCC-------CCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 28 VGIESRLEKLRFLMGTGS-------TDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 28 vGr~~~~~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
.+++..+-.+...+.... .-..++.++|.+|+||||++++++..+.-+
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h 458 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH 458 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCc
Confidence 456666667777776532 235689999999999999999999876554
No 446
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.60 E-value=0.18 Score=55.59 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=28.2
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.+.++|..+-..-.++-|+|.+|+||||++.+++....
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~ 120 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQ 120 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44555543324457899999999999999999886643
No 447
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.59 E-value=0.26 Score=50.54 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.5
Q ss_pred eEEEEEcCCcchHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVY 69 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~ 69 (1051)
.+++|.|+.|.|||||..+++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999985
No 448
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.59 E-value=0.12 Score=47.25 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=33.3
Q ss_pred ccccchhHHHH----HHHHhcCC-CCCeeEEEEEcCCcchHHHHHHHHHHH
Q 048831 26 ELVGIESRLEK----LRFLMGTG-STDVRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 26 ~~vGr~~~~~~----l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
.++|.+-..+. |...+... .+.+-|++..|.+|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 45666644444 44445432 356789999999999999999999875
No 449
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.57 E-value=0.066 Score=52.76 Aligned_cols=45 Identities=27% Similarity=0.318 Sum_probs=32.3
Q ss_pred cccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHH
Q 048831 27 LVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 27 ~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
+||....++++.+.+..-.....-|.|+|..|+||+.+|+++++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888877776542222256779999999999999999984
No 450
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.57 E-value=0.12 Score=50.48 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=58.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL 128 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l 128 (1051)
.+++|.|..|.|||||++.+...+.. ..+.+++..... .. .. ..+....+.-... ...-+...-.+...+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~~-~~--~~----~~~~~~~i~~~~q--lS~G~~~r~~l~~~l 95 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKDI-AK--LP----LEELRRRIGYVPQ--LSGGQRQRVALARAL 95 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEc-cc--CC----HHHHHhceEEEee--CCHHHHHHHHHHHHH
Confidence 68999999999999999999875543 344454432110 00 00 0011111100000 001112222344555
Q ss_pred CCCeEEEEEeCCCC---HHHHHHHhcCCCC-CCCCCEEEEEeCChhhhHh
Q 048831 129 RQQKVLLVIDDVAD---VEQLQSLAGKRDW-FGLGSRILITTRDKQLLVA 174 (1051)
Q Consensus 129 ~~k~~LlVlDdv~~---~~~~~~l~~~~~~-~~~gs~IiiTTR~~~~~~~ 174 (1051)
...+-++++|+... ......+...+.. ...+..+|++|.+......
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 56677899998732 2222222221111 1225678889888765544
No 451
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.56 E-value=0.3 Score=56.24 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.++++++|+.|+||||++.+++..+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHH
Confidence 479999999999999999999987643
No 452
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.54 E-value=0.14 Score=54.58 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=30.0
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEE
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSF 81 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 81 (1051)
.+..+|.|.|..|.|||||+..+...++......++
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 457899999999999999999999988776544443
No 453
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.054 Score=52.60 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=22.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..+.|.|+.|+|||||.+.++--.+.
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl~p 54 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLLRP 54 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcccCC
Confidence 57899999999999999999874443
No 454
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.42 E-value=0.063 Score=53.89 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
++++|.|+.|+||||+|+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 455
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.41 E-value=0.056 Score=56.08 Aligned_cols=25 Identities=48% Similarity=0.668 Sum_probs=22.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+|+|.|..|.||||+|+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999987753
No 456
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.41 E-value=0.043 Score=55.37 Aligned_cols=21 Identities=33% Similarity=0.139 Sum_probs=18.9
Q ss_pred EEEEEcCCcchHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999983
No 457
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.41 E-value=0.13 Score=50.43 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=25.4
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
...+++|+|..|.|||||++++...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45799999999999999999999877653
No 458
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.37 E-value=0.17 Score=56.62 Aligned_cols=93 Identities=25% Similarity=0.245 Sum_probs=54.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcccc-ceEE-EeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFY-ASSF-LADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGS 126 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~-~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 126 (1051)
..|.|.|+.|.||||+++++.+.+..... ..++ +.+-.+.. ..+. .. +.. .. +... ..+.......++.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~-~~~~-~~----~~~-~~-q~ev-g~~~~~~~~~l~~ 220 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYI-LGSP-DD----LLP-PA-QSQI-GRDVDSFANGIRL 220 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhc-cCCC-ce----eec-cc-cccc-CCCccCHHHHHHH
Confidence 47889999999999999999887754332 2332 22211111 0000 00 000 00 0000 0122344567788
Q ss_pred hhCCCeEEEEEeCCCCHHHHHHHh
Q 048831 127 RLRQQKVLLVIDDVADVEQLQSLA 150 (1051)
Q Consensus 127 ~l~~k~~LlVlDdv~~~~~~~~l~ 150 (1051)
.|+..+=.|+++.+.+.+.++...
T Consensus 221 aLR~~PD~I~vGEiRd~et~~~al 244 (372)
T TIGR02525 221 ALRRAPKIIGVGEIRDLETFQAAV 244 (372)
T ss_pred hhccCCCEEeeCCCCCHHHHHHHH
Confidence 888899999999999988877543
No 459
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.36 E-value=0.067 Score=51.90 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=24.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcccc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFY 77 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 77 (1051)
+-|.++||.|.||||+.++++..+.-.|-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence 45889999999999999999987766553
No 460
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.34 E-value=0.064 Score=51.76 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+|.|.|+.|.||||+|+++..++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998753
No 461
>PRK13948 shikimate kinase; Provisional
Probab=93.32 E-value=0.076 Score=52.99 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=24.4
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..+.|.+.||.|+||||+++.+++++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3578999999999999999999987643
No 462
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.086 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.+++|.|++|+|||||+++++++.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999999876
No 463
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.29 E-value=0.16 Score=55.66 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHH
Q 048831 35 EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 35 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
+.|.++|..+-....++.|+|.+|+||||++..++.
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 455566654334568999999999999999988875
No 464
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.29 E-value=0.92 Score=48.60 Aligned_cols=39 Identities=18% Similarity=-0.010 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 33 RLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 33 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..+++...+..+ .-.....++|+.|+||+++|.+++..+
T Consensus 5 ~~~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 345666666553 234688899999999999999998865
No 465
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.28 E-value=0.11 Score=57.77 Aligned_cols=51 Identities=27% Similarity=0.302 Sum_probs=40.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceE
Q 048831 26 ELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASS 80 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~ 80 (1051)
.++|++..+..+...+..+ +.+.+.|.+|+|||+||+.++..+...|....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~ 75 (329)
T COG0714 25 VVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRIQ 75 (329)
T ss_pred eeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEEe
Confidence 3899888888776666543 46889999999999999999998875554333
No 466
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.28 E-value=0.071 Score=50.35 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+|.|.|++|.||||+|+.+++.+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6899999999999999999987643
No 467
>PRK10436 hypothetical protein; Provisional
Probab=93.24 E-value=0.34 Score=55.90 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCC
Q 048831 33 RLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDI 112 (1051)
Q Consensus 33 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 112 (1051)
.++.+.+++... ..+|.|.|+.|.||||...++.+.+...-...+-+.+--+ +...+. .+.. .
T Consensus 206 ~~~~l~~~~~~~---~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE-~~l~gi---------~Q~~----v 268 (462)
T PRK10436 206 QLAQFRQALQQP---QGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVE-IPLAGI---------NQTQ----I 268 (462)
T ss_pred HHHHHHHHHHhc---CCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcc-ccCCCc---------ceEe----e
Confidence 344455555432 3689999999999999998877765443222222221111 001111 0000 0
Q ss_pred ccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHH
Q 048831 113 SIWHVDDGINIIGSRLRQQKVLLVIDDVADVEQLQSL 149 (1051)
Q Consensus 113 ~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~~~~l 149 (1051)
...........++..|+..+=.|++.++.+.+..+..
T Consensus 269 ~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~a 305 (462)
T PRK10436 269 HPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIA 305 (462)
T ss_pred CCccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHH
Confidence 0011123466788889988889999999988876643
No 468
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=1.4 Score=51.71 Aligned_cols=150 Identities=20% Similarity=0.242 Sum_probs=80.0
Q ss_pred CccccchhHHHHHHHHhcCCC-----------CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCC
Q 048831 25 KELVGIESRLEKLRFLMGTGS-----------TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEG 93 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 93 (1051)
+++=|..+..+.+++.+.-.. .-..-|.++|++|.|||-||-+++....-+ |+. +.+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-vKG------ 734 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-VKG------ 734 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-ecC------
Confidence 345566655555666554321 123458899999999999999998754322 222 222
Q ss_pred CHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhC-CCeEEEEEeCCCCHH-------------HHHHHhcCCCC--CC
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLR-QQKVLLVIDDVADVE-------------QLQSLAGKRDW--FG 157 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~-~k~~LlVlDdv~~~~-------------~~~~l~~~~~~--~~ 157 (1051)
. ++++.-. ...++..+.+.++.+ -+++++.||.++... -...++..+.. +-
T Consensus 735 P------ElL~KyI-------GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl 801 (952)
T KOG0735|consen 735 P------ELLSKYI-------GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL 801 (952)
T ss_pred H------HHHHHHh-------cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc
Confidence 1 2333322 112333444444444 499999999986431 24445544431 11
Q ss_pred CCCEEEE-EeCChhhhHhh----CCCCcceEEcCCCChhHHHHHHHHhh
Q 048831 158 LGSRILI-TTRDKQLLVAH----EVDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 158 ~gs~Iii-TTR~~~~~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
.|--|+. |||..-+-.+. ..++ .+.-..-++.|-++++...+
T Consensus 802 ~GV~i~aaTsRpdliDpALLRpGRlD~--~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 802 DGVYILAATSRPDLIDPALLRPGRLDK--LVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred ceEEEEEecCCccccCHhhcCCCccce--eeeCCCCCcHHHHHHHHHHh
Confidence 4555554 56654332221 1222 34444456667777776544
No 469
>PRK06217 hypothetical protein; Validated
Probab=93.22 E-value=0.067 Score=53.88 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.|+|.|++|.||||+|+++...+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998753
No 470
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.21 E-value=0.063 Score=54.92 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=21.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
+|+|.|..|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 471
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.20 E-value=0.075 Score=51.77 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.9
Q ss_pred EEEEcCCcchHHHHHHHHHHHHh
Q 048831 51 IGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 51 v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
|.|+|++|.||||+|+.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 472
>PRK13975 thymidylate kinase; Provisional
Probab=93.20 E-value=0.081 Score=54.04 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999998764
No 473
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.20 E-value=0.062 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=20.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 474
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.18 E-value=0.12 Score=58.59 Aligned_cols=49 Identities=24% Similarity=0.275 Sum_probs=35.1
Q ss_pred ccccchhHHHHHHHHhc-------CC-----C--CCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 26 ELVGIESRLEKLRFLMG-------TG-----S--TDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~-------~~-----~--~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
++||.+..++.+...+. .. . -....|.++|++|+|||++|+.++..+..
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 57999888877644331 10 0 12356899999999999999999987643
No 475
>PRK14526 adenylate kinase; Provisional
Probab=93.17 E-value=0.42 Score=49.09 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEEcCCcchHHHHHHHHHHHH
Q 048831 51 IGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 51 v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
++|.|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988764
No 476
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.17 E-value=0.44 Score=47.82 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=58.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcc---c-cceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccc-hhhHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHE---F-YASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHV-DDGINI 123 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~---f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~~~ 123 (1051)
.-..|.|++|+||||+.+.++.-++.. | ...+-+.+-+..... ++...-|.++...+. ..+. ....-+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag-~~~gvpq~~~g~R~d------Vld~cpk~~gm 210 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAG-CLNGVPQHGRGRRMD------VLDPCPKAEGM 210 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhc-cccCCchhhhhhhhh------hcccchHHHHH
Confidence 346789999999999999999865544 3 223333333221111 110001111211111 1111 111111
Q ss_pred HHHhhCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 048831 124 IGSRLRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQL 171 (1051)
Q Consensus 124 i~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~ 171 (1051)
+...=...+=++|.|.+...++..++.... ..|.++|.|..-..+
T Consensus 211 mmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~i 255 (308)
T COG3854 211 MMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGI 255 (308)
T ss_pred HHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccH
Confidence 111112356689999998888766665543 367788777765443
No 477
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.13 E-value=0.34 Score=49.61 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
-.+++|.|..|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998875
No 478
>PRK13946 shikimate kinase; Provisional
Probab=93.12 E-value=0.076 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+.|++.|+.|+||||+|+.+++++.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999999873
No 479
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.11 E-value=0.83 Score=48.68 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=24.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..+++++|.+|+||||+++.+...+..+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~ 102 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK 102 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 4799999999999999999998776543
No 480
>PRK13949 shikimate kinase; Provisional
Probab=93.10 E-value=0.081 Score=52.35 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
-|.|.|+.|.||||+|+.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 481
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=0.65 Score=54.82 Aligned_cols=98 Identities=22% Similarity=0.334 Sum_probs=56.8
Q ss_pred CCCCC-CccccchhHHHHHHHHhcC----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhh
Q 048831 20 EPKTV-KELVGIESRLEKLRFLMGT----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRER 88 (1051)
Q Consensus 20 ~~~~~-~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 88 (1051)
.|.+. ++.=|.++-..+|.+-+.. +-....=|.+||++|.|||-+|++|+-...=. |+. |.+
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlS-VKG- 738 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLS-VKG- 738 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EEe-ecC-
Confidence 33333 3455666555566655543 11234568899999999999999999765433 222 221
Q ss_pred hhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhC-CCeEEEEEeCCCC
Q 048831 89 FEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLR-QQKVLLVIDDVAD 142 (1051)
Q Consensus 89 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~-~k~~LlVlDdv~~ 142 (1051)
. +++..-.+ ..++-.+.+.++.+ .++++|.||.+|.
T Consensus 739 -----P------ELLNMYVG-------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 739 -----P------ELLNMYVG-------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -----H------HHHHHHhc-------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1 23333221 12233334444444 4899999999875
No 482
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.09 E-value=0.21 Score=54.85 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 35 EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 35 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..+.+.+....+...+|+|.|.+|+||||++.++...++..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444444333567899999999999999999998877654
No 483
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.08 E-value=0.24 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHH
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
..++++|.|+.|.||||+.+.+..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998874
No 484
>PRK15453 phosphoribulokinase; Provisional
Probab=93.02 E-value=0.14 Score=54.03 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.5
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
...+|+|.|.+|.||||+|+++.+.++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999999987654
No 485
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.01 E-value=0.087 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 486
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.98 E-value=0.33 Score=49.83 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=23.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+.++|.|.+|+|||+|+..+.+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~ 41 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA 41 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEEcCcccccchhhHHHHhcccc
Confidence 56899999999999999999987653
No 487
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.95 E-value=0.092 Score=52.19 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+.|+|.|+.|.||||+|+.++....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 5699999999999999999998753
No 488
>PHA02244 ATPase-like protein
Probab=92.95 E-value=0.094 Score=57.54 Aligned_cols=46 Identities=11% Similarity=0.196 Sum_probs=32.0
Q ss_pred CccccchhHHH----HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 25 KELVGIESRLE----KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 25 ~~~vGr~~~~~----~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..++|....+. .+.+++..+ .-|.|+|++|+|||++|++++.....
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44677555554 444444332 34788999999999999999987543
No 489
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=92.95 E-value=0.26 Score=55.42 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=20.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
-.++|.|++|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5799999999999999999875
No 490
>PRK01184 hypothetical protein; Provisional
Probab=92.94 E-value=0.86 Score=45.89 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=17.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.+|+|+|++|.||||+|+ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 479999999999999987 444
No 491
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.94 E-value=0.33 Score=50.89 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
+|+|.|.+|.||||+|+++.+.++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999877654
No 492
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.93 E-value=0.15 Score=60.63 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=37.6
Q ss_pred ccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 26 ELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..+.|.+-.+.|.++.........+|.|+|+.|.||||+|++++.++..
T Consensus 370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3556666666666666555455568999999999999999999998764
No 493
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.92 E-value=0.094 Score=53.90 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=24.8
Q ss_pred hcCCCCCeeEEEEEcCCcchHHHHHHHHHHH
Q 048831 41 MGTGSTDVRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 41 L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
+-.+....+.|+|.|++|+|||||++++.+.
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3334456689999999999999999998754
No 494
>PRK08506 replicative DNA helicase; Provisional
Probab=92.89 E-value=0.97 Score=52.82 Aligned_cols=36 Identities=22% Similarity=0.106 Sum_probs=26.7
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
.-.++.|-|.+|+|||++|..++.....+-..++|+
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~f 226 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFF 226 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEE
Confidence 346899999999999999999987664432334444
No 495
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.89 E-value=0.077 Score=50.94 Aligned_cols=20 Identities=40% Similarity=0.704 Sum_probs=18.7
Q ss_pred EEEEEcCCcchHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVY 69 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~ 69 (1051)
.|+|+|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 496
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.89 E-value=0.43 Score=48.94 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
-.+++|.|..|.|||||++.+.....
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 36899999999999999999987654
No 497
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.88 E-value=0.19 Score=55.58 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHH
Q 048831 35 EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 35 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
..|.++|..+-....++-|+|.+|+|||++|..++-.
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 4555656543344578999999999999999887753
No 498
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.87 E-value=0.12 Score=50.26 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
+++|+|+.|+||||++.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58899999999999999999988765
No 499
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.83 E-value=0.13 Score=55.98 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=26.2
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYA 78 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~ 78 (1051)
.+++.+.|.||+||||+|.+.+-........
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~k 32 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKK 32 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCc
Confidence 4799999999999999999988777666544
No 500
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.82 E-value=0.16 Score=60.78 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=48.0
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc-ccceEEEee
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE-FYASSFLAD 84 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~ 84 (1051)
.+|.....++|.+..++.|...+... +.+.|+|.+|+||||+|+++++.+... ++...|..+
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 45555678999998888888777643 478999999999999999999876433 466667665
Done!