Query 048831
Match_columns 1051
No_of_seqs 701 out of 5228
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 00:33:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.9E-40 1.3E-44 392.1 17.8 302 28-343 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-34 6.1E-39 382.4 20.2 310 19-342 118-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 2.1E-34 7.2E-39 343.1 15.7 280 26-335 129-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-33 5.3E-38 341.2 20.5 334 19-368 118-497 (591)
5 4eco_A Uncharacterized protein 100.0 2.4E-32 8.2E-37 332.3 23.7 346 428-789 192-599 (636)
6 3rgz_A Protein brassinosteroid 100.0 5.5E-32 1.9E-36 337.1 24.1 404 390-794 239-721 (768)
7 4ecn_A Leucine-rich repeat pro 100.0 1.6E-30 5.4E-35 320.6 30.0 344 429-789 435-839 (876)
8 3rgz_A Protein brassinosteroid 100.0 2.2E-30 7.4E-35 322.7 29.0 391 394-794 219-697 (768)
9 3t6q_A CD180 antigen; protein- 100.0 1.4E-28 4.9E-33 299.5 38.0 406 381-788 40-511 (606)
10 4eco_A Uncharacterized protein 100.0 3.2E-29 1.1E-33 304.7 23.0 338 391-769 199-600 (636)
11 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-28 1.3E-32 295.7 31.8 383 386-787 44-507 (606)
12 3t6q_A CD180 antigen; protein- 100.0 1E-27 3.6E-32 291.8 34.6 253 534-788 267-534 (606)
13 3vq2_A TLR4, TOLL-like recepto 100.0 5.6E-28 1.9E-32 294.2 31.5 375 385-789 67-557 (606)
14 4ecn_A Leucine-rich repeat pro 100.0 3.2E-28 1.1E-32 300.1 28.0 331 451-796 435-824 (876)
15 2z63_A TOLL-like receptor 4, v 100.0 7.2E-28 2.4E-32 291.2 29.6 397 383-787 37-528 (570)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-27 6.5E-32 283.7 27.6 357 398-788 21-479 (520)
17 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-27 7.3E-32 298.9 29.0 397 385-787 35-536 (844)
18 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-27 5.5E-32 286.6 23.9 368 387-788 39-508 (549)
19 1ziw_A TOLL-like receptor 3; i 100.0 8.5E-26 2.9E-30 278.8 39.2 398 386-787 37-570 (680)
20 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-26 5.7E-31 290.7 32.7 391 396-793 22-519 (844)
21 3v47_A TOLL-like receptor 5B a 100.0 4.5E-27 1.5E-31 275.6 25.3 338 417-788 28-406 (455)
22 2z7x_B TOLL-like receptor 1, v 99.9 5.3E-27 1.8E-31 279.9 25.3 352 384-768 31-480 (520)
23 4fmz_A Internalin; leucine ric 99.9 2.3E-26 7.8E-31 259.1 28.9 300 420-767 45-344 (347)
24 2z63_A TOLL-like receptor 4, v 99.9 3E-26 1E-30 276.9 30.0 381 398-787 28-504 (570)
25 2z81_A CD282 antigen, TOLL-lik 99.9 1.6E-26 5.5E-31 277.9 27.1 375 398-793 26-488 (549)
26 1o6v_A Internalin A; bacterial 99.9 6.4E-26 2.2E-30 265.9 31.2 322 394-767 64-386 (466)
27 1ziw_A TOLL-like receptor 3; i 99.9 1.7E-25 5.8E-30 276.2 35.1 317 466-787 250-594 (680)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.9E-26 1.3E-30 274.7 27.7 358 398-788 52-508 (562)
29 1o6v_A Internalin A; bacterial 99.9 1.4E-25 4.6E-30 263.2 31.4 339 397-788 45-386 (466)
30 3v47_A TOLL-like receptor 5B a 99.9 6.7E-26 2.3E-30 265.6 25.3 338 422-794 13-387 (455)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.5E-25 8.6E-30 267.6 30.7 357 399-795 32-490 (562)
32 2id5_A Lingo-1, leucine rich r 99.9 1.5E-25 5.2E-30 264.0 28.1 313 422-768 14-332 (477)
33 1jl5_A Outer protein YOPM; leu 99.9 7.2E-25 2.5E-29 254.4 30.6 51 709-767 318-368 (454)
34 4fmz_A Internalin; leucine ric 99.9 4E-25 1.4E-29 249.0 27.1 301 438-788 41-344 (347)
35 2id5_A Lingo-1, leucine rich r 99.9 1.2E-24 4.1E-29 256.4 28.8 313 401-747 14-334 (477)
36 3bz5_A Internalin-J, INLJ; leu 99.9 5.3E-24 1.8E-28 247.3 30.9 280 439-767 62-350 (457)
37 3o6n_A APL1; leucine-rich repe 99.9 1.9E-24 6.5E-29 247.5 26.2 299 420-787 46-349 (390)
38 1jl5_A Outer protein YOPM; leu 99.9 4.9E-24 1.7E-28 247.4 28.5 326 391-789 27-369 (454)
39 3oja_B Anopheles plasmodium-re 99.9 3.7E-24 1.3E-28 258.8 26.5 299 420-787 52-355 (597)
40 3o6n_A APL1; leucine-rich repe 99.9 5.7E-24 2E-28 243.5 26.1 301 396-767 43-350 (390)
41 3oja_B Anopheles plasmodium-re 99.9 1.7E-23 5.9E-28 252.9 27.5 300 397-767 50-356 (597)
42 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-23 8.7E-28 241.6 26.6 308 393-749 37-355 (457)
43 1xku_A Decorin; proteoglycan, 99.9 9.4E-23 3.2E-27 227.6 28.2 239 420-674 32-275 (330)
44 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-22 5.4E-27 247.9 30.1 387 398-788 52-578 (635)
45 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-22 3.9E-27 227.0 25.5 283 420-767 34-331 (332)
46 2ft3_A Biglycan; proteoglycan, 99.9 8.2E-23 2.8E-27 228.2 24.1 293 398-744 33-331 (332)
47 1xku_A Decorin; proteoglycan, 99.9 2.9E-22 9.8E-27 223.7 28.0 286 441-767 31-330 (330)
48 4g8a_A TOLL-like receptor 4; l 99.9 3E-22 1E-26 245.3 28.4 385 381-768 59-579 (635)
49 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-23 4.6E-28 231.9 14.1 252 488-773 51-308 (313)
50 4fcg_A Uncharacterized protein 99.9 1.4E-22 4.9E-27 225.0 20.6 221 511-766 81-311 (328)
51 4fcg_A Uncharacterized protein 99.9 1.3E-22 4.5E-27 225.3 19.8 229 419-672 81-311 (328)
52 1ogq_A PGIP-2, polygalacturona 99.9 3.4E-23 1.2E-27 228.7 11.4 246 441-744 50-302 (313)
53 1z7x_W Ribonuclease inhibitor; 99.9 8.3E-24 2.8E-28 248.3 -2.6 366 399-787 4-437 (461)
54 2z80_A TOLL-like receptor 2, v 99.9 2.7E-21 9.4E-26 217.8 17.2 211 540-769 96-314 (353)
55 3g06_A SSPH2 (leucine-rich rep 99.9 4.5E-20 1.5E-24 220.4 28.3 257 420-746 41-297 (622)
56 3g06_A SSPH2 (leucine-rich rep 99.8 2.3E-19 7.8E-24 214.3 30.0 268 399-733 41-308 (622)
57 2z66_A Variable lymphocyte rec 99.8 1.2E-20 4.2E-25 208.0 17.1 218 422-674 10-235 (306)
58 3zyj_A Leucine-rich repeat-con 99.8 1.1E-19 3.9E-24 211.0 23.5 205 539-767 83-290 (440)
59 3zyi_A Leucine-rich repeat-con 99.8 1.3E-19 4.5E-24 211.3 22.6 205 539-767 94-301 (452)
60 2z66_A Variable lymphocyte rec 99.8 8.8E-20 3E-24 201.1 20.0 204 541-767 49-259 (306)
61 3zyi_A Leucine-rich repeat-con 99.8 2.8E-19 9.4E-24 208.6 24.3 241 421-674 56-302 (452)
62 3zyj_A Leucine-rich repeat-con 99.8 2.1E-19 7.2E-24 208.8 23.2 241 421-674 45-291 (440)
63 2z80_A TOLL-like receptor 2, v 99.8 1.2E-19 4.2E-24 204.3 18.5 263 423-721 35-314 (353)
64 1ozn_A Reticulon 4 receptor; N 99.8 9.9E-20 3.4E-24 198.4 16.6 218 422-650 14-236 (285)
65 1ozn_A Reticulon 4 receptor; N 99.8 7.4E-19 2.5E-23 191.5 22.4 203 543-768 31-237 (285)
66 1z7x_W Ribonuclease inhibitor; 99.8 6.5E-22 2.2E-26 232.1 -2.7 348 418-788 2-409 (461)
67 3o53_A Protein LRIM1, AGAP0063 99.8 4.5E-21 1.5E-25 212.3 2.8 66 704-771 210-277 (317)
68 1wwl_A Monocyte differentiatio 99.8 8.2E-21 2.8E-25 209.7 4.8 200 542-767 93-307 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.8 3.4E-20 1.2E-24 205.2 7.5 237 463-743 33-272 (317)
70 3oja_A Leucine-rich immune mol 99.8 4E-18 1.4E-22 199.8 18.9 212 512-768 35-249 (487)
71 3ogk_B Coronatine-insensitive 99.8 5.9E-20 2E-24 222.8 3.4 371 393-788 107-524 (592)
72 3oja_A Leucine-rich immune mol 99.8 3.4E-19 1.2E-23 208.8 9.7 235 462-764 32-270 (487)
73 3ogk_B Coronatine-insensitive 99.8 8.8E-20 3E-24 221.3 2.8 317 420-767 165-524 (592)
74 2z62_A TOLL-like receptor 4, v 99.8 1.1E-17 3.8E-22 181.2 18.8 209 534-768 20-236 (276)
75 2p1m_B Transport inhibitor res 99.8 3.8E-20 1.3E-24 224.6 -0.9 376 393-789 100-518 (594)
76 1wwl_A Monocyte differentiatio 99.7 2E-19 6.9E-24 198.5 3.6 76 420-497 44-131 (312)
77 1p9a_G Platelet glycoprotein I 99.7 4E-17 1.4E-21 177.5 21.3 174 544-767 31-206 (290)
78 2o6q_A Variable lymphocyte rec 99.7 1.6E-16 5.5E-21 171.3 22.3 176 569-767 38-216 (270)
79 2p1m_B Transport inhibitor res 99.7 2.2E-19 7.4E-24 218.0 -1.7 367 391-789 59-493 (594)
80 1h6u_A Internalin H; cell adhe 99.7 9.4E-17 3.2E-21 176.4 18.2 190 542-767 39-228 (308)
81 2xwt_C Thyrotropin receptor; s 99.7 1.1E-16 3.8E-21 169.2 16.8 195 545-767 32-237 (239)
82 2xwt_C Thyrotropin receptor; s 99.7 1.4E-16 4.7E-21 168.4 16.0 209 554-790 20-239 (239)
83 2ast_B S-phase kinase-associat 99.7 2.1E-17 7.1E-22 184.8 9.5 173 443-626 49-233 (336)
84 2z62_A TOLL-like receptor 4, v 99.7 3.5E-16 1.2E-20 169.4 18.9 220 424-655 12-240 (276)
85 1p9a_G Platelet glycoprotein I 99.7 7.1E-16 2.4E-20 167.6 21.2 198 440-674 9-207 (290)
86 2o6q_A Variable lymphocyte rec 99.7 1.2E-15 4E-20 164.5 22.7 199 420-652 17-218 (270)
87 3rfs_A Internalin B, repeat mo 99.7 2.5E-16 8.5E-21 169.9 17.2 200 543-774 40-240 (272)
88 1h6u_A Internalin H; cell adhe 99.7 2.8E-16 9.6E-21 172.7 17.7 178 540-752 59-236 (308)
89 3rfs_A Internalin B, repeat mo 99.7 2.1E-16 7.1E-21 170.5 15.7 164 564-757 81-247 (272)
90 2ast_B S-phase kinase-associat 99.7 1.3E-17 4.6E-22 186.4 6.5 183 540-743 89-282 (336)
91 4glp_A Monocyte differentiatio 99.7 1.5E-16 5.3E-21 175.2 13.1 197 544-767 91-305 (310)
92 4ay9_X Follicle-stimulating ho 99.7 1.1E-15 3.7E-20 171.5 19.0 217 422-674 12-235 (350)
93 2ca6_A RAN GTPase-activating p 99.7 7.9E-18 2.7E-22 192.0 0.8 185 565-767 91-314 (386)
94 2qen_A Walker-type ATPase; unk 99.6 3.5E-15 1.2E-19 167.7 19.4 295 19-336 6-349 (350)
95 2ca6_A RAN GTPase-activating p 99.6 4.9E-17 1.7E-21 185.4 3.6 241 432-677 22-318 (386)
96 4ay9_X Follicle-stimulating ho 99.6 5.2E-15 1.8E-19 165.9 19.2 221 548-774 13-241 (350)
97 3m19_A Variable lymphocyte rec 99.6 8.2E-15 2.8E-19 156.0 19.4 173 570-767 16-190 (251)
98 4glp_A Monocyte differentiatio 99.6 2.2E-15 7.7E-20 165.9 13.6 221 440-675 63-307 (310)
99 3m19_A Variable lymphocyte rec 99.6 2.8E-14 9.6E-19 151.8 19.5 155 569-746 36-192 (251)
100 2fna_A Conserved hypothetical 99.6 4.1E-15 1.4E-19 167.7 13.7 295 19-335 7-356 (357)
101 3cvr_A Invasion plasmid antige 99.6 1.3E-14 4.3E-19 171.1 17.9 179 512-746 60-243 (571)
102 3goz_A Leucine-rich repeat-con 99.6 4.1E-16 1.4E-20 175.9 4.3 205 545-767 52-295 (362)
103 1h6t_A Internalin B; cell adhe 99.6 2.2E-14 7.4E-19 156.0 16.4 167 567-767 45-211 (291)
104 1h6t_A Internalin B; cell adhe 99.6 3.2E-14 1.1E-18 154.7 16.0 175 541-750 43-217 (291)
105 3goz_A Leucine-rich repeat-con 99.5 5.9E-16 2E-20 174.5 1.6 256 445-747 2-298 (362)
106 1w5s_A Origin recognition comp 99.5 6.1E-14 2.1E-18 161.4 17.8 290 20-320 17-371 (412)
107 3cvr_A Invasion plasmid antige 99.5 3.2E-14 1.1E-18 167.7 13.9 187 399-638 60-253 (571)
108 1m9s_A Internalin B; cell inva 99.5 9.9E-14 3.4E-18 165.5 17.6 175 541-750 40-214 (605)
109 4ezg_A Putative uncharacterize 99.5 8.5E-14 2.9E-18 141.9 13.1 131 540-674 62-193 (197)
110 4ezg_A Putative uncharacterize 99.5 6.9E-14 2.4E-18 142.6 12.3 150 568-746 44-194 (197)
111 1m9s_A Internalin B; cell inva 99.5 1.1E-13 3.7E-18 165.2 15.8 126 540-673 61-186 (605)
112 2o6s_A Variable lymphocyte rec 99.5 2.7E-13 9.2E-18 139.6 14.5 160 544-757 28-190 (208)
113 2o6s_A Variable lymphocyte rec 99.5 5.4E-13 1.9E-17 137.4 16.0 173 571-774 10-183 (208)
114 1xeu_A Internalin C; cellular 99.5 5.8E-14 2E-18 150.1 8.9 166 543-767 18-183 (263)
115 3e6j_A Variable lymphocyte rec 99.5 8.1E-13 2.8E-17 138.1 17.1 148 571-767 22-170 (229)
116 2v9t_B SLIT homolog 2 protein 99.5 7.1E-13 2.4E-17 137.5 16.1 149 571-767 14-163 (220)
117 2qby_B CDC6 homolog 3, cell di 99.4 5.7E-12 1.9E-16 143.3 23.3 278 24-320 19-339 (384)
118 1xeu_A Internalin C; cellular 99.4 2.3E-13 7.9E-18 145.4 9.8 173 510-751 18-190 (263)
119 1dce_A Protein (RAB geranylger 99.4 3.3E-15 1.1E-19 177.2 -5.8 218 483-763 345-567 (567)
120 2v70_A SLIT-2, SLIT homolog 2 99.4 1.9E-12 6.4E-17 134.3 15.4 82 572-655 15-97 (220)
121 2xot_A Amphoterin-induced prot 99.4 8.8E-13 3E-17 148.3 13.8 171 547-767 21-200 (361)
122 1dce_A Protein (RAB geranylger 99.4 4.1E-15 1.4E-19 176.4 -6.0 181 565-774 346-550 (567)
123 2v1u_A Cell division control p 99.4 6.8E-12 2.3E-16 142.9 20.4 316 20-368 14-382 (387)
124 2xot_A Amphoterin-induced prot 99.4 2E-12 7E-17 145.3 15.6 160 544-746 39-202 (361)
125 2v9t_B SLIT homolog 2 protein 99.4 5.5E-12 1.9E-16 130.8 16.1 131 544-674 32-164 (220)
126 2v70_A SLIT-2, SLIT homolog 2 99.4 5.3E-12 1.8E-16 130.9 15.7 131 544-674 32-165 (220)
127 3e6j_A Variable lymphocyte rec 99.4 9.1E-12 3.1E-16 130.0 17.3 151 546-721 21-172 (229)
128 2qby_A CDC6 homolog 1, cell di 99.4 6E-12 2.1E-16 143.3 16.1 290 20-320 15-348 (386)
129 2ell_A Acidic leucine-rich nuc 99.3 4.7E-12 1.6E-16 125.3 10.4 131 589-767 22-158 (168)
130 2ell_A Acidic leucine-rich nuc 99.3 4.1E-12 1.4E-16 125.7 9.5 86 568-655 24-111 (168)
131 1fnn_A CDC6P, cell division co 99.3 2.4E-11 8.3E-16 138.4 16.7 288 22-320 14-351 (389)
132 1njg_A DNA polymerase III subu 99.3 7.3E-12 2.5E-16 132.7 11.0 203 20-236 18-231 (250)
133 2je0_A Acidic leucine-rich nuc 99.3 5.5E-12 1.9E-16 122.0 8.3 127 616-765 18-149 (149)
134 2je0_A Acidic leucine-rich nuc 99.3 6.9E-12 2.4E-16 121.3 7.9 127 543-670 16-148 (149)
135 4b8c_D Glucose-repressible alc 99.3 3.9E-12 1.3E-16 155.9 7.5 156 579-766 212-369 (727)
136 4b8c_D Glucose-repressible alc 99.2 1.9E-12 6.6E-17 158.6 3.5 150 482-649 219-369 (727)
137 2chg_A Replication factor C sm 99.2 1.2E-10 4.2E-15 121.2 14.7 191 20-234 12-205 (226)
138 1w8a_A SLIT protein; signaling 99.2 1.4E-10 4.7E-15 117.4 13.6 81 571-653 11-92 (192)
139 2wfh_A SLIT homolog 2 protein 99.1 3.1E-10 1.1E-14 114.7 13.7 125 547-674 13-138 (193)
140 1w8a_A SLIT protein; signaling 99.1 2.4E-10 8.2E-15 115.6 12.6 125 547-674 11-138 (192)
141 3sb4_A Hypothetical leucine ri 99.1 1E-10 3.4E-15 129.7 10.2 253 397-669 48-328 (329)
142 1a9n_A U2A', U2A'; complex (nu 99.1 9.4E-11 3.2E-15 116.8 9.0 129 541-673 16-151 (176)
143 1a9n_A U2A', U2A'; complex (nu 99.1 8.5E-11 2.9E-15 117.1 8.5 61 705-767 85-151 (176)
144 2wfh_A SLIT homolog 2 protein 99.1 6.4E-10 2.2E-14 112.4 14.5 81 571-654 13-93 (193)
145 1sxj_B Activator 1 37 kDa subu 99.1 4.1E-10 1.4E-14 124.6 12.7 190 20-234 16-211 (323)
146 2o6r_A Variable lymphocyte rec 99.1 1.9E-09 6.4E-14 107.5 14.9 53 571-625 10-62 (177)
147 2o6r_A Variable lymphocyte rec 99.0 2.6E-09 9E-14 106.4 13.2 110 544-653 28-138 (177)
148 1ds9_A Outer arm dynein; leuci 99.0 4.1E-12 1.4E-16 129.5 -8.4 112 610-747 43-154 (198)
149 1iqp_A RFCS; clamp loader, ext 98.9 6.1E-09 2.1E-13 115.3 14.2 192 19-235 19-214 (327)
150 1ds9_A Outer arm dynein; leuci 98.9 1.1E-11 3.6E-16 126.5 -8.5 131 533-668 37-180 (198)
151 3sb4_A Hypothetical leucine ri 98.9 6.5E-09 2.2E-13 115.0 11.5 63 707-773 225-289 (329)
152 2r9u_A Variable lymphocyte rec 98.8 2E-08 6.8E-13 99.4 11.8 100 572-673 16-116 (174)
153 3g39_A Variable lymphocyte rec 98.8 2.1E-08 7.1E-13 98.9 11.8 103 546-651 11-114 (170)
154 4fdw_A Leucine rich hypothetic 98.8 2.3E-07 7.8E-12 104.9 20.9 209 442-672 158-380 (401)
155 1hqc_A RUVB; extended AAA-ATPa 98.8 4.2E-08 1.4E-12 108.3 13.3 260 20-324 7-302 (324)
156 4fdw_A Leucine rich hypothetic 98.8 6.2E-07 2.1E-11 101.3 23.2 194 545-767 158-356 (401)
157 2chq_A Replication factor C sm 98.7 1.1E-07 3.7E-12 104.7 16.6 188 20-233 12-204 (319)
158 3g39_A Variable lymphocyte rec 98.7 4E-08 1.4E-12 96.9 11.5 104 570-675 11-115 (170)
159 1jr3_A DNA polymerase III subu 98.7 5.4E-08 1.8E-12 109.8 14.0 200 20-234 11-222 (373)
160 2r9u_A Variable lymphocyte rec 98.7 4.7E-08 1.6E-12 96.7 11.6 109 547-659 15-125 (174)
161 1jbk_A CLPB protein; beta barr 98.6 4E-07 1.4E-11 91.7 15.7 52 21-74 18-69 (195)
162 3d8b_A Fidgetin-like protein 1 98.6 7.4E-07 2.5E-11 99.2 18.4 202 3-234 64-296 (357)
163 1sxj_A Activator 1 95 kDa subu 98.6 5E-07 1.7E-11 105.8 17.2 222 20-263 34-286 (516)
164 3te6_A Regulatory protein SIR3 98.6 7.7E-07 2.6E-11 95.6 15.9 171 26-202 21-212 (318)
165 3h4m_A Proteasome-activating n 98.5 5.3E-07 1.8E-11 97.3 13.9 186 19-231 11-229 (285)
166 3un9_A NLR family member X1; l 98.5 2.9E-09 9.8E-14 119.3 -4.2 42 705-746 208-252 (372)
167 3bos_A Putative DNA replicatio 98.5 2.4E-07 8.3E-12 97.2 10.7 177 22-233 25-217 (242)
168 3pfi_A Holliday junction ATP-d 98.5 1.3E-06 4.3E-11 96.9 16.5 181 19-233 23-227 (338)
169 4fs7_A Uncharacterized protein 98.5 8.2E-06 2.8E-10 92.4 23.5 77 704-793 316-393 (394)
170 2qp9_X Vacuolar protein sortin 98.5 4.3E-06 1.5E-10 92.8 19.9 198 7-233 31-261 (355)
171 1sxj_D Activator 1 41 kDa subu 98.5 1.2E-06 4E-11 97.9 15.3 200 19-233 31-235 (353)
172 3b9p_A CG5977-PA, isoform A; A 98.5 2.9E-06 9.8E-11 92.1 17.8 197 8-233 2-233 (297)
173 3eie_A Vacuolar protein sortin 98.5 5.3E-06 1.8E-10 90.9 20.0 186 19-233 12-228 (322)
174 2ifg_A High affinity nerve gro 98.5 3.5E-07 1.2E-11 101.9 10.6 76 549-625 13-90 (347)
175 2z4s_A Chromosomal replication 98.4 2.2E-06 7.4E-11 98.0 16.3 184 23-231 103-304 (440)
176 2ifg_A High affinity nerve gro 98.4 6.6E-07 2.3E-11 99.6 11.2 103 572-675 12-116 (347)
177 1sxj_E Activator 1 40 kDa subu 98.4 1.5E-06 5.3E-11 96.9 14.2 203 20-233 9-237 (354)
178 2qz4_A Paraplegin; AAA+, SPG7, 98.4 3.9E-06 1.3E-10 89.2 16.7 184 22-232 3-221 (262)
179 3un9_A NLR family member X1; l 98.4 4.7E-08 1.6E-12 109.4 1.6 63 612-674 180-251 (372)
180 2ra8_A Uncharacterized protein 98.4 9.7E-08 3.3E-12 105.9 3.8 20 501-520 129-148 (362)
181 1d2n_A N-ethylmaleimide-sensit 98.4 4E-06 1.4E-10 89.6 15.8 199 25-253 33-263 (272)
182 1xwi_A SKD1 protein; VPS4B, AA 98.4 9E-06 3.1E-10 88.8 18.7 187 20-234 7-224 (322)
183 1l8q_A Chromosomal replication 98.4 1.3E-05 4.4E-10 88.1 19.3 180 21-228 7-203 (324)
184 2p65_A Hypothetical protein PF 98.3 3.6E-06 1.2E-10 84.1 13.5 52 21-74 18-69 (187)
185 4fs7_A Uncharacterized protein 98.3 3.1E-05 1.1E-09 87.6 22.2 326 386-761 59-393 (394)
186 3u61_B DNA polymerase accessor 98.3 4E-06 1.4E-10 92.2 14.3 182 20-229 21-212 (324)
187 3vfd_A Spastin; ATPase, microt 98.3 6.9E-06 2.3E-10 92.7 16.4 185 20-233 110-326 (389)
188 2zan_A Vacuolar protein sortin 98.3 9E-06 3.1E-10 93.0 16.4 196 10-233 117-345 (444)
189 3uk6_A RUVB-like 2; hexameric 98.3 2E-05 6.9E-10 88.3 18.9 203 24-232 43-302 (368)
190 2ra8_A Uncharacterized protein 98.3 9.9E-07 3.4E-11 97.7 7.6 59 459-519 167-227 (362)
191 3pvs_A Replication-associated 98.2 4.7E-06 1.6E-10 94.9 12.8 182 19-232 20-214 (447)
192 3syl_A Protein CBBX; photosynt 98.2 1E-05 3.5E-10 88.3 14.1 152 26-203 32-219 (309)
193 3cf0_A Transitional endoplasmi 98.1 3.4E-05 1.2E-09 83.5 15.4 179 20-228 10-223 (301)
194 1sxj_C Activator 1 40 kDa subu 98.0 3.5E-05 1.2E-09 85.1 14.3 185 20-229 20-208 (340)
195 3pxg_A Negative regulator of g 98.0 7.5E-05 2.5E-09 86.0 17.1 153 20-201 175-338 (468)
196 3hu3_A Transitional endoplasmi 98.0 4.9E-05 1.7E-09 87.4 13.8 180 24-232 203-414 (489)
197 1a5t_A Delta prime, HOLB; zinc 98.0 0.00011 3.6E-09 80.9 16.0 182 31-232 8-204 (334)
198 4b4t_J 26S protease regulatory 97.9 0.00024 8.3E-09 78.1 18.1 173 23-226 146-354 (405)
199 1in4_A RUVB, holliday junction 97.9 0.00014 4.7E-09 79.9 16.2 178 20-231 20-221 (334)
200 1lv7_A FTSH; alpha/beta domain 97.9 7.4E-05 2.5E-09 78.8 13.5 182 20-230 7-222 (257)
201 4gt6_A Cell surface protein; l 97.9 0.00086 3E-08 75.6 22.8 125 611-764 261-386 (394)
202 4b4t_L 26S protease subunit RP 97.9 0.00028 9.7E-09 79.0 17.6 176 22-226 178-387 (437)
203 1qvr_A CLPB protein; coiled co 97.9 9.8E-05 3.3E-09 92.0 15.1 156 22-200 167-344 (854)
204 4gt6_A Cell surface protein; l 97.8 0.0018 6E-08 73.1 24.2 109 633-767 259-368 (394)
205 4b4t_H 26S protease regulatory 97.8 0.00032 1.1E-08 78.2 17.2 173 23-226 207-415 (467)
206 3ec2_A DNA replication protein 97.8 5.5E-05 1.9E-09 74.9 10.1 51 23-73 8-63 (180)
207 1r6b_X CLPA protein; AAA+, N-t 97.8 0.0004 1.4E-08 85.6 19.9 157 22-201 183-362 (758)
208 4h09_A Hypothetical leucine ri 97.8 0.0024 8.1E-08 71.6 24.2 59 703-763 281-340 (379)
209 4b4t_M 26S protease regulatory 97.8 0.00027 9.2E-09 79.1 15.5 177 20-225 176-386 (434)
210 2ce7_A Cell division protein F 97.7 0.00033 1.1E-08 79.7 15.7 175 23-226 14-221 (476)
211 3n70_A Transport activator; si 97.7 4.4E-05 1.5E-09 72.5 7.2 47 26-72 2-48 (145)
212 1ofh_A ATP-dependent HSL prote 97.7 0.00012 4.2E-09 79.6 11.8 50 25-74 15-76 (310)
213 3pxi_A Negative regulator of g 97.7 0.00047 1.6E-08 84.9 18.2 152 21-201 176-338 (758)
214 4b4t_I 26S protease regulatory 97.7 0.00065 2.2E-08 74.9 16.7 177 21-226 178-388 (437)
215 4b4t_K 26S protease regulatory 97.7 0.00029 1E-08 78.7 13.8 53 23-75 170-233 (428)
216 2r62_A Cell division protease 97.6 6.4E-05 2.2E-09 79.9 7.4 56 20-75 6-71 (268)
217 4h09_A Hypothetical leucine ri 97.6 0.01 3.5E-07 66.3 24.8 276 386-670 57-341 (379)
218 3e4g_A ATP synthase subunit S, 97.6 7.1E-05 2.4E-09 72.4 5.7 86 544-629 61-153 (176)
219 2w58_A DNAI, primosome compone 97.5 0.00023 7.8E-09 71.9 9.1 62 22-83 22-89 (202)
220 3t15_A Ribulose bisphosphate c 97.5 0.00078 2.7E-08 72.3 13.5 30 46-75 34-63 (293)
221 1io0_A Tropomodulin; LRR prote 97.5 2.7E-05 9.1E-10 77.5 1.4 60 543-602 35-104 (185)
222 1ixz_A ATP-dependent metallopr 97.4 0.0014 4.9E-08 68.7 14.7 54 20-73 11-74 (254)
223 1io0_A Tropomodulin; LRR prote 97.4 4.1E-05 1.4E-09 76.2 2.4 114 560-673 28-162 (185)
224 2c9o_A RUVB-like 1; hexameric 97.4 0.00092 3.2E-08 76.7 13.9 50 24-73 36-88 (456)
225 1iy2_A ATP-dependent metallopr 97.4 0.0017 5.9E-08 69.1 14.9 54 20-73 35-98 (278)
226 4fcw_A Chaperone protein CLPB; 97.4 0.00075 2.6E-08 73.3 11.9 50 26-75 18-74 (311)
227 3e4g_A ATP synthase subunit S, 97.4 8.1E-05 2.8E-09 72.0 3.5 16 754-769 137-152 (176)
228 2gno_A DNA polymerase III, gam 97.4 0.001 3.4E-08 71.5 12.1 146 29-201 1-152 (305)
229 3co5_A Putative two-component 97.3 7.2E-05 2.5E-09 70.8 2.5 48 25-72 4-51 (143)
230 2bjv_A PSP operon transcriptio 97.3 0.0007 2.4E-08 71.6 10.0 50 24-73 5-54 (265)
231 3cf2_A TER ATPase, transitiona 97.3 0.00082 2.8E-08 81.0 11.5 173 24-226 203-407 (806)
232 1ojl_A Transcriptional regulat 97.2 0.0016 5.6E-08 70.1 12.3 48 25-72 2-49 (304)
233 2dhr_A FTSH; AAA+ protein, hex 97.2 0.0014 4.9E-08 75.0 11.3 174 20-226 26-236 (499)
234 2x8a_A Nuclear valosin-contain 97.1 0.0046 1.6E-07 65.4 14.2 151 24-201 9-191 (274)
235 3m6a_A ATP-dependent protease 97.1 0.0035 1.2E-07 73.3 14.0 50 27-76 83-136 (543)
236 3rw6_A Nuclear RNA export fact 97.1 0.00033 1.1E-08 73.2 4.6 62 543-605 169-234 (267)
237 3rw6_A Nuclear RNA export fact 97.0 0.00012 4.1E-09 76.6 0.7 39 565-603 167-208 (267)
238 1ypw_A Transitional endoplasmi 97.0 0.0019 6.5E-08 79.3 10.9 154 23-201 202-385 (806)
239 2kjq_A DNAA-related protein; s 97.0 0.00045 1.5E-08 65.6 4.1 27 48-74 36-62 (149)
240 3pxi_A Negative regulator of g 96.9 0.0033 1.1E-07 77.2 12.1 150 25-201 491-675 (758)
241 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0054 1.9E-07 75.5 10.4 48 25-72 458-512 (758)
242 2qgz_A Helicase loader, putati 96.5 0.0071 2.4E-07 65.1 10.0 61 22-82 121-187 (308)
243 1g5t_A COB(I)alamin adenosyltr 96.4 0.0024 8.2E-08 62.6 4.9 113 49-170 29-164 (196)
244 2cvh_A DNA repair and recombin 96.3 0.0085 2.9E-07 61.0 8.9 35 36-70 8-42 (220)
245 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.005 1.7E-07 65.3 4.6 24 48-71 123-146 (331)
246 3lw7_A Adenylate kinase relate 95.7 0.038 1.3E-06 53.7 9.9 20 49-68 2-21 (179)
247 1jr3_D DNA polymerase III, del 95.6 0.14 4.9E-06 55.9 15.0 156 47-231 17-183 (343)
248 3jvv_A Twitching mobility prot 95.5 0.022 7.4E-07 62.4 7.9 110 49-172 124-234 (356)
249 3e70_C DPA, signal recognition 95.5 0.023 7.9E-07 61.4 8.0 71 4-75 71-156 (328)
250 3bh0_A DNAB-like replicative h 95.5 0.069 2.4E-06 57.6 11.7 37 47-83 67-103 (315)
251 3cf2_A TER ATPase, transitiona 95.5 0.037 1.3E-06 66.8 10.3 50 25-74 477-537 (806)
252 2b8t_A Thymidine kinase; deoxy 95.4 0.027 9.4E-07 56.9 7.7 112 48-170 12-127 (223)
253 1qvr_A CLPB protein; coiled co 95.4 0.037 1.3E-06 68.8 10.5 49 26-74 559-614 (854)
254 2r44_A Uncharacterized protein 95.4 0.0092 3.1E-07 65.3 4.3 48 24-75 26-73 (331)
255 3hws_A ATP-dependent CLP prote 95.3 0.014 4.9E-07 64.6 5.8 48 26-73 16-76 (363)
256 1zu4_A FTSY; GTPase, signal re 95.3 0.037 1.3E-06 59.6 8.6 75 4-83 52-139 (320)
257 3hr8_A Protein RECA; alpha and 95.3 0.041 1.4E-06 59.9 8.9 50 34-83 46-96 (356)
258 4a74_A DNA repair and recombin 95.3 0.021 7.1E-07 58.6 6.4 38 36-73 13-50 (231)
259 1rz3_A Hypothetical protein rb 95.3 0.025 8.5E-07 56.6 6.8 45 30-74 3-48 (201)
260 2xxa_A Signal recognition part 95.1 0.067 2.3E-06 60.1 10.5 72 4-75 46-127 (433)
261 1qhx_A CPT, protein (chloramph 95.1 0.01 3.5E-07 58.1 3.4 26 49-74 4-29 (178)
262 3sr0_A Adenylate kinase; phosp 95.1 0.048 1.6E-06 54.6 8.3 87 50-149 2-93 (206)
263 1sky_E F1-ATPase, F1-ATP synth 95.1 0.048 1.6E-06 61.1 8.9 37 49-85 152-188 (473)
264 2eyu_A Twitching motility prot 95.1 0.028 9.6E-07 58.7 6.6 111 48-171 25-135 (261)
265 3umf_A Adenylate kinase; rossm 95.0 0.045 1.5E-06 55.1 7.8 27 46-72 27-53 (217)
266 3c8u_A Fructokinase; YP_612366 95.0 0.023 7.7E-07 57.3 5.6 41 34-74 8-48 (208)
267 3ice_A Transcription terminati 95.0 0.025 8.5E-07 61.2 6.0 39 49-87 175-214 (422)
268 2px0_A Flagellar biosynthesis 95.0 0.094 3.2E-06 55.8 10.5 28 47-74 104-131 (296)
269 4a1f_A DNAB helicase, replicat 94.8 0.067 2.3E-06 57.7 8.9 49 34-83 33-81 (338)
270 2q6t_A DNAB replication FORK h 94.8 0.1 3.5E-06 59.3 11.0 37 47-83 199-236 (444)
271 1j8m_F SRP54, signal recogniti 94.8 0.049 1.7E-06 58.0 7.7 72 4-75 44-125 (297)
272 3b9q_A Chloroplast SRP recepto 94.8 0.055 1.9E-06 57.8 8.1 76 4-82 48-133 (302)
273 3kb2_A SPBC2 prophage-derived 94.8 0.017 5.7E-07 56.1 3.8 25 49-73 2-26 (173)
274 1odf_A YGR205W, hypothetical 3 94.7 0.037 1.3E-06 58.7 6.3 30 45-74 28-57 (290)
275 3io5_A Recombination and repai 94.7 0.051 1.8E-06 57.3 7.2 34 50-83 30-65 (333)
276 1n0w_A DNA repair protein RAD5 94.6 0.023 7.8E-07 58.8 4.5 37 36-72 12-48 (243)
277 1rj9_A FTSY, signal recognitio 94.6 0.059 2E-06 57.5 7.7 36 47-83 101-136 (304)
278 1ex7_A Guanylate kinase; subst 94.6 0.013 4.6E-07 57.4 2.4 29 49-77 2-30 (186)
279 3vaa_A Shikimate kinase, SK; s 94.5 0.021 7.3E-07 57.0 4.0 26 48-73 25-50 (199)
280 3trf_A Shikimate kinase, SK; a 94.5 0.02 7E-07 56.3 3.8 26 48-73 5-30 (185)
281 2og2_A Putative signal recogni 94.4 0.074 2.5E-06 58.0 8.2 76 4-82 105-190 (359)
282 1um8_A ATP-dependent CLP prote 94.4 0.03 1E-06 62.3 5.1 48 26-73 22-97 (376)
283 2ga8_A Hypothetical 39.9 kDa p 94.3 0.031 1.1E-06 60.2 4.8 49 28-76 2-52 (359)
284 3nbx_X ATPase RAVA; AAA+ ATPas 94.3 0.033 1.1E-06 63.8 5.3 45 25-73 22-66 (500)
285 1xp8_A RECA protein, recombina 94.3 0.063 2.1E-06 58.9 7.2 51 33-83 58-109 (366)
286 1g8p_A Magnesium-chelatase 38 94.3 0.024 8.3E-07 62.4 4.0 53 19-73 18-70 (350)
287 3kl4_A SRP54, signal recogniti 94.3 0.074 2.5E-06 59.4 7.9 41 35-75 77-124 (433)
288 1vma_A Cell division protein F 94.2 0.074 2.5E-06 56.7 7.5 45 31-75 81-131 (306)
289 3uie_A Adenylyl-sulfate kinase 94.1 0.045 1.5E-06 54.7 5.3 26 48-73 25-50 (200)
290 1tue_A Replication protein E1; 94.1 0.044 1.5E-06 53.9 4.9 42 32-74 43-84 (212)
291 1nks_A Adenylate kinase; therm 94.1 0.042 1.4E-06 54.4 5.0 26 49-74 2-27 (194)
292 1zuh_A Shikimate kinase; alpha 94.1 0.031 1.1E-06 54.0 3.8 26 48-73 7-32 (168)
293 2ewv_A Twitching motility prot 94.1 0.091 3.1E-06 58.0 8.1 110 48-170 136-245 (372)
294 3dm5_A SRP54, signal recogniti 94.1 0.11 3.7E-06 58.1 8.6 29 47-75 99-127 (443)
295 1kgd_A CASK, peripheral plasma 94.0 0.024 8.1E-07 55.6 3.0 25 49-73 6-30 (180)
296 2zr9_A Protein RECA, recombina 94.0 0.067 2.3E-06 58.4 6.6 51 33-83 45-96 (349)
297 1xjc_A MOBB protein homolog; s 93.9 0.051 1.7E-06 52.1 4.9 29 47-75 3-31 (169)
298 2r6a_A DNAB helicase, replicat 93.9 0.16 5.3E-06 58.0 9.9 36 48-83 203-239 (454)
299 3iij_A Coilin-interacting nucl 93.9 0.027 9.3E-07 55.2 3.0 25 48-72 11-35 (180)
300 1kag_A SKI, shikimate kinase I 93.8 0.026 8.9E-07 54.8 2.8 25 49-73 5-29 (173)
301 2rhm_A Putative kinase; P-loop 93.8 0.04 1.4E-06 54.6 4.2 25 48-72 5-29 (193)
302 1ly1_A Polynucleotide kinase; 93.8 0.035 1.2E-06 54.3 3.6 22 49-70 3-24 (181)
303 2yvu_A Probable adenylyl-sulfa 93.7 0.057 1.9E-06 53.2 5.1 28 47-74 12-39 (186)
304 1via_A Shikimate kinase; struc 93.7 0.031 1.1E-06 54.5 3.1 24 50-73 6-29 (175)
305 2ze6_A Isopentenyl transferase 93.7 0.039 1.3E-06 57.4 4.0 25 49-73 2-26 (253)
306 1kht_A Adenylate kinase; phosp 93.6 0.038 1.3E-06 54.6 3.7 26 49-74 4-29 (192)
307 2yhs_A FTSY, cell division pro 93.6 0.13 4.3E-06 58.2 8.0 77 4-83 243-327 (503)
308 3t61_A Gluconokinase; PSI-biol 93.6 0.032 1.1E-06 55.8 3.0 25 48-72 18-42 (202)
309 3a00_A Guanylate kinase, GMP k 93.6 0.032 1.1E-06 55.0 2.9 29 49-77 2-30 (186)
310 3tlx_A Adenylate kinase 2; str 93.6 0.053 1.8E-06 56.1 4.7 26 47-72 28-53 (243)
311 1v5w_A DMC1, meiotic recombina 93.5 0.13 4.5E-06 56.1 8.1 37 36-72 110-146 (343)
312 3tau_A Guanylate kinase, GMP k 93.5 0.035 1.2E-06 55.9 3.1 27 48-74 8-34 (208)
313 1zp6_A Hypothetical protein AT 93.5 0.039 1.3E-06 54.5 3.4 24 48-71 9-32 (191)
314 2jaq_A Deoxyguanosine kinase; 93.4 0.041 1.4E-06 55.0 3.6 25 50-74 2-26 (205)
315 1pgv_A TMD-1, tropomodulin TMD 93.4 0.05 1.7E-06 53.5 3.9 40 563-602 65-109 (197)
316 3ney_A 55 kDa erythrocyte memb 93.4 0.037 1.3E-06 54.6 3.0 28 47-74 18-45 (197)
317 1g41_A Heat shock protein HSLU 93.4 0.078 2.7E-06 59.3 5.9 52 25-76 15-78 (444)
318 1knq_A Gluconate kinase; ALFA/ 93.3 0.064 2.2E-06 52.1 4.5 25 48-72 8-32 (175)
319 2c95_A Adenylate kinase 1; tra 93.2 0.048 1.6E-06 54.1 3.7 25 48-72 9-33 (196)
320 4eun_A Thermoresistant glucoki 93.2 0.05 1.7E-06 54.3 3.8 25 48-72 29-53 (200)
321 2iyv_A Shikimate kinase, SK; t 93.2 0.04 1.4E-06 54.1 3.0 25 49-73 3-27 (184)
322 1y63_A LMAJ004144AAA protein; 93.2 0.052 1.8E-06 53.4 3.8 24 48-71 10-33 (184)
323 3k1j_A LON protease, ATP-depen 93.2 0.053 1.8E-06 64.4 4.6 52 21-76 37-88 (604)
324 1nn5_A Similar to deoxythymidy 93.1 0.071 2.4E-06 53.8 4.8 28 48-75 9-36 (215)
325 2z43_A DNA repair and recombin 93.1 0.075 2.6E-06 57.6 5.2 38 36-73 95-132 (324)
326 2pt7_A CAG-ALFA; ATPase, prote 93.1 0.083 2.8E-06 57.2 5.5 103 49-170 172-276 (330)
327 1e6c_A Shikimate kinase; phosp 93.1 0.045 1.5E-06 53.1 3.1 25 49-73 3-27 (173)
328 1tev_A UMP-CMP kinase; ploop, 93.1 0.057 2E-06 53.5 3.9 25 48-72 3-27 (196)
329 3fwy_A Light-independent proto 93.1 0.085 2.9E-06 56.6 5.4 30 46-75 46-75 (314)
330 3p32_A Probable GTPase RV1496/ 93.0 0.15 5E-06 56.1 7.5 41 35-75 66-106 (355)
331 1ukz_A Uridylate kinase; trans 93.0 0.058 2E-06 53.9 3.9 27 46-72 13-39 (203)
332 2qor_A Guanylate kinase; phosp 93.0 0.044 1.5E-06 55.0 3.0 27 47-73 11-37 (204)
333 1gvn_B Zeta; postsegregational 93.0 0.081 2.8E-06 56.1 5.2 26 47-72 32-57 (287)
334 3tqc_A Pantothenate kinase; bi 93.0 0.091 3.1E-06 56.3 5.5 46 28-73 70-117 (321)
335 2pt5_A Shikimate kinase, SK; a 93.0 0.061 2.1E-06 51.8 3.8 24 50-73 2-25 (168)
336 1uj2_A Uridine-cytidine kinase 92.9 0.057 1.9E-06 56.2 3.8 29 46-74 20-48 (252)
337 2ck3_D ATP synthase subunit be 92.9 0.3 1E-05 54.5 9.7 39 49-87 154-192 (482)
338 2plr_A DTMP kinase, probable t 92.9 0.086 2.9E-06 53.0 5.1 28 49-76 5-32 (213)
339 1pgv_A TMD-1, tropomodulin TMD 92.9 0.039 1.3E-06 54.3 2.3 85 540-624 66-166 (197)
340 2vli_A Antibiotic resistance p 92.9 0.04 1.4E-06 54.0 2.4 26 48-73 5-30 (183)
341 2bwj_A Adenylate kinase 5; pho 92.9 0.056 1.9E-06 53.8 3.5 25 49-73 13-37 (199)
342 3cm0_A Adenylate kinase; ATP-b 92.9 0.063 2.2E-06 52.8 3.8 24 49-72 5-28 (186)
343 2cdn_A Adenylate kinase; phosp 92.7 0.076 2.6E-06 53.0 4.3 26 48-73 20-45 (201)
344 1fx0_B ATP synthase beta chain 92.7 0.24 8.3E-06 55.5 8.6 38 49-87 166-204 (498)
345 2bdt_A BH3686; alpha-beta prot 92.7 0.063 2.1E-06 53.0 3.6 22 49-70 3-24 (189)
346 1aky_A Adenylate kinase; ATP:A 92.6 0.066 2.3E-06 54.3 3.7 26 48-73 4-29 (220)
347 1ye8_A Protein THEP1, hypothet 92.6 0.073 2.5E-06 51.9 3.8 24 50-73 2-25 (178)
348 1qf9_A UMP/CMP kinase, protein 92.6 0.07 2.4E-06 52.7 3.8 26 48-73 6-31 (194)
349 3l0o_A Transcription terminati 92.5 0.058 2E-06 58.3 3.2 39 49-87 176-215 (427)
350 1cke_A CK, MSSA, protein (cyti 92.5 0.068 2.3E-06 54.5 3.7 24 49-72 6-29 (227)
351 2j37_W Signal recognition part 92.5 0.17 5.7E-06 57.9 7.1 41 35-75 81-128 (504)
352 2v3c_C SRP54, signal recogniti 92.5 0.12 4.2E-06 58.0 5.9 41 35-75 79-126 (432)
353 3a4m_A L-seryl-tRNA(SEC) kinas 92.5 0.077 2.6E-06 55.5 4.0 26 48-73 4-29 (260)
354 2wsm_A Hydrogenase expression/ 92.5 0.11 3.7E-06 52.7 5.1 45 29-75 13-57 (221)
355 1uf9_A TT1252 protein; P-loop, 92.5 0.072 2.5E-06 53.1 3.7 26 46-71 6-31 (203)
356 2hf9_A Probable hydrogenase ni 92.4 0.17 5.9E-06 51.3 6.6 41 33-75 25-65 (226)
357 3asz_A Uridine kinase; cytidin 92.4 0.08 2.8E-06 53.3 4.0 27 47-73 5-31 (211)
358 3tr0_A Guanylate kinase, GMP k 92.4 0.073 2.5E-06 53.2 3.6 24 49-72 8-31 (205)
359 2wwf_A Thymidilate kinase, put 92.4 0.099 3.4E-06 52.6 4.7 28 48-75 10-37 (212)
360 2pbr_A DTMP kinase, thymidylat 92.4 0.075 2.6E-06 52.6 3.7 25 50-74 2-26 (195)
361 2if2_A Dephospho-COA kinase; a 92.4 0.065 2.2E-06 53.6 3.2 22 49-70 2-23 (204)
362 2j41_A Guanylate kinase; GMP, 92.3 0.076 2.6E-06 53.2 3.7 24 49-72 7-30 (207)
363 2grj_A Dephospho-COA kinase; T 92.2 0.079 2.7E-06 52.3 3.6 26 47-72 11-36 (192)
364 2bbw_A Adenylate kinase 4, AK4 92.2 0.082 2.8E-06 54.7 3.8 26 48-73 27-52 (246)
365 2j9r_A Thymidine kinase; TK1, 92.2 0.37 1.3E-05 47.9 8.2 109 48-170 28-139 (214)
366 3nwj_A ATSK2; P loop, shikimat 92.1 0.07 2.4E-06 55.1 3.1 25 49-73 49-73 (250)
367 2qt1_A Nicotinamide riboside k 92.1 0.089 3E-06 52.8 3.8 27 46-72 19-45 (207)
368 1gtv_A TMK, thymidylate kinase 92.0 0.067 2.3E-06 54.0 2.9 26 49-74 1-26 (214)
369 2pez_A Bifunctional 3'-phospho 92.0 0.099 3.4E-06 51.0 4.0 27 48-74 5-31 (179)
370 2p5t_B PEZT; postsegregational 92.0 0.13 4.6E-06 53.4 5.2 28 46-73 30-57 (253)
371 1zak_A Adenylate kinase; ATP:A 92.0 0.073 2.5E-06 54.1 3.1 26 48-73 5-30 (222)
372 3e1s_A Exodeoxyribonuclease V, 92.0 0.47 1.6E-05 55.5 10.3 28 49-76 205-232 (574)
373 2z0h_A DTMP kinase, thymidylat 91.9 0.092 3.2E-06 52.1 3.7 25 50-74 2-26 (197)
374 1zd8_A GTP:AMP phosphotransfer 91.9 0.076 2.6E-06 54.2 3.1 25 48-72 7-31 (227)
375 1lvg_A Guanylate kinase, GMP k 91.9 0.078 2.7E-06 52.8 3.1 25 49-73 5-29 (198)
376 4gp7_A Metallophosphoesterase; 91.9 0.071 2.4E-06 51.7 2.7 22 48-69 9-30 (171)
377 1jjv_A Dephospho-COA kinase; P 91.8 0.086 2.9E-06 52.8 3.4 22 49-70 3-24 (206)
378 3fb4_A Adenylate kinase; psych 91.8 0.097 3.3E-06 52.9 3.7 23 50-72 2-24 (216)
379 1u0j_A DNA replication protein 91.7 0.17 5.8E-06 52.2 5.4 36 37-72 93-128 (267)
380 4e22_A Cytidylate kinase; P-lo 91.7 0.092 3.1E-06 54.6 3.5 26 48-73 27-52 (252)
381 2w0m_A SSO2452; RECA, SSPF, un 91.6 0.14 4.7E-06 52.3 4.8 34 49-82 24-57 (235)
382 3d3q_A TRNA delta(2)-isopenten 91.6 0.099 3.4E-06 56.2 3.7 25 49-73 8-32 (340)
383 2ffh_A Protein (FFH); SRP54, s 91.6 0.31 1.1E-05 54.3 7.9 29 47-75 97-125 (425)
384 1m7g_A Adenylylsulfate kinase; 91.6 0.12 4.1E-06 52.0 4.2 26 48-73 25-50 (211)
385 2dr3_A UPF0273 protein PH0284; 91.5 0.15 5.1E-06 52.6 4.9 36 48-83 23-58 (247)
386 1np6_A Molybdopterin-guanine d 91.4 0.18 6.3E-06 48.7 5.1 27 48-74 6-32 (174)
387 2jeo_A Uridine-cytidine kinase 91.4 0.12 4.2E-06 53.3 4.1 26 47-72 24-49 (245)
388 2v54_A DTMP kinase, thymidylat 91.4 0.097 3.3E-06 52.3 3.3 24 49-72 5-28 (204)
389 2i1q_A DNA repair and recombin 91.3 0.18 6.1E-06 54.6 5.5 38 35-72 85-122 (322)
390 3dl0_A Adenylate kinase; phosp 91.3 0.1 3.5E-06 52.7 3.3 23 50-72 2-24 (216)
391 3aez_A Pantothenate kinase; tr 91.3 0.13 4.3E-06 55.2 4.2 29 46-74 88-116 (312)
392 3r20_A Cytidylate kinase; stru 91.3 0.12 4E-06 52.6 3.7 26 48-73 9-34 (233)
393 2f1r_A Molybdopterin-guanine d 91.3 0.096 3.3E-06 50.5 2.9 27 49-75 3-29 (171)
394 3hjn_A DTMP kinase, thymidylat 91.2 0.6 2.1E-05 46.1 8.7 32 50-81 2-33 (197)
395 3ake_A Cytidylate kinase; CMP 91.2 0.13 4.4E-06 51.5 3.9 24 50-73 4-27 (208)
396 3bgw_A DNAB-like replicative h 91.2 0.22 7.6E-06 56.3 6.2 36 47-82 196-231 (444)
397 3a8t_A Adenylate isopentenyltr 91.2 0.09 3.1E-06 56.3 2.8 25 48-72 40-64 (339)
398 3crm_A TRNA delta(2)-isopenten 91.1 0.11 3.7E-06 55.5 3.2 25 49-73 6-30 (323)
399 1svm_A Large T antigen; AAA+ f 91.1 0.19 6.3E-06 55.3 5.2 27 46-72 167-193 (377)
400 3llm_A ATP-dependent RNA helic 91.1 1.1 3.7E-05 45.7 10.9 21 49-69 77-97 (235)
401 1htw_A HI0065; nucleotide-bind 91.0 0.13 4.3E-06 49.0 3.4 25 48-72 33-57 (158)
402 1znw_A Guanylate kinase, GMP k 91.0 0.11 3.8E-06 52.1 3.2 25 49-73 21-45 (207)
403 1ak2_A Adenylate kinase isoenz 91.0 0.14 4.7E-06 52.5 4.0 26 48-73 16-41 (233)
404 1vht_A Dephospho-COA kinase; s 90.9 0.14 4.7E-06 51.8 3.8 23 48-70 4-26 (218)
405 1tf7_A KAIC; homohexamer, hexa 90.9 0.64 2.2E-05 54.0 10.0 39 37-75 270-308 (525)
406 1z6g_A Guanylate kinase; struc 90.9 0.1 3.5E-06 52.8 2.8 25 48-72 23-47 (218)
407 2f6r_A COA synthase, bifunctio 90.9 0.12 4.2E-06 54.6 3.5 24 47-70 74-97 (281)
408 3exa_A TRNA delta(2)-isopenten 90.9 0.12 4.1E-06 54.6 3.3 24 49-72 4-27 (322)
409 2r8r_A Sensor protein; KDPD, P 90.8 0.2 6.7E-06 50.2 4.7 27 49-75 7-33 (228)
410 1s96_A Guanylate kinase, GMP k 90.8 0.12 4.3E-06 52.1 3.3 26 48-73 16-41 (219)
411 3be4_A Adenylate kinase; malar 90.8 0.13 4.5E-06 52.0 3.5 24 49-72 6-29 (217)
412 2xb4_A Adenylate kinase; ATP-b 90.8 0.14 4.7E-06 52.1 3.7 23 50-72 2-24 (223)
413 1u94_A RECA protein, recombina 90.8 0.21 7.3E-06 54.4 5.4 51 33-83 47-98 (356)
414 2i3b_A HCR-ntpase, human cance 90.7 0.12 4.2E-06 50.7 3.1 24 50-73 3-26 (189)
415 1e4v_A Adenylate kinase; trans 90.6 0.14 4.8E-06 51.6 3.6 23 50-72 2-24 (214)
416 1a7j_A Phosphoribulokinase; tr 90.5 0.092 3.2E-06 55.7 2.1 27 47-73 4-30 (290)
417 2ehv_A Hypothetical protein PH 90.4 0.19 6.7E-06 51.9 4.6 23 48-70 30-52 (251)
418 3foz_A TRNA delta(2)-isopenten 90.3 0.15 5.1E-06 53.7 3.5 25 48-72 10-34 (316)
419 1yrb_A ATP(GTP)binding protein 90.3 0.28 9.5E-06 51.2 5.7 28 46-73 12-39 (262)
420 3rfe_A Platelet glycoprotein I 90.3 0.43 1.5E-05 43.5 6.2 52 423-475 12-66 (130)
421 1g8f_A Sulfate adenylyltransfe 90.2 0.23 7.7E-06 56.8 5.1 47 28-74 375-421 (511)
422 1q3t_A Cytidylate kinase; nucl 90.2 0.18 6.1E-06 51.7 4.0 27 46-72 14-40 (236)
423 3end_A Light-independent proto 90.1 0.26 8.8E-06 52.9 5.2 30 46-75 39-68 (307)
424 2orw_A Thymidine kinase; TMTK, 90.0 0.24 8.2E-06 48.4 4.5 26 49-74 4-29 (184)
425 4hlc_A DTMP kinase, thymidylat 89.9 0.27 9.3E-06 49.0 4.9 29 49-77 3-31 (205)
426 2qmh_A HPR kinase/phosphorylas 89.8 0.15 5.1E-06 49.9 2.7 24 49-72 35-58 (205)
427 1sq5_A Pantothenate kinase; P- 89.7 0.21 7.1E-06 53.6 4.1 28 46-73 78-105 (308)
428 3lnc_A Guanylate kinase, GMP k 89.6 0.12 4.1E-06 52.9 2.1 25 48-72 27-52 (231)
429 1cp2_A CP2, nitrogenase iron p 89.6 0.3 1E-05 51.2 5.2 27 49-75 2-28 (269)
430 1ls1_A Signal recognition part 89.5 0.31 1.1E-05 51.8 5.3 36 47-83 97-132 (295)
431 2onk_A Molybdate/tungstate ABC 89.4 0.19 6.5E-06 51.5 3.4 25 46-71 23-47 (240)
432 4eaq_A DTMP kinase, thymidylat 89.4 0.25 8.4E-06 50.3 4.2 28 47-74 25-52 (229)
433 2fz4_A DNA repair protein RAD2 89.4 2.2 7.7E-05 43.4 11.5 40 28-72 93-132 (237)
434 3cmu_A Protein RECA, recombina 89.2 0.26 9E-06 64.9 5.2 47 37-83 1415-1462(2050)
435 1cr0_A DNA primase/helicase; R 89.1 0.3 1E-05 52.1 4.8 27 49-75 36-62 (296)
436 2ocp_A DGK, deoxyguanosine kin 89.0 0.22 7.6E-06 51.2 3.6 26 48-73 2-27 (241)
437 2p67_A LAO/AO transport system 89.0 0.56 1.9E-05 51.0 7.0 29 46-74 54-82 (341)
438 3eph_A TRNA isopentenyltransfe 89.0 0.22 7.7E-06 54.5 3.7 25 49-73 3-27 (409)
439 1ltq_A Polynucleotide kinase; 89.0 0.21 7.2E-06 53.4 3.6 23 49-71 3-25 (301)
440 1q57_A DNA primase/helicase; d 89.0 2 6.8E-05 49.5 12.1 36 48-83 242-278 (503)
441 4edh_A DTMP kinase, thymidylat 88.8 0.4 1.4E-05 48.1 5.2 28 48-75 6-33 (213)
442 1nlf_A Regulatory protein REPA 88.8 0.34 1.2E-05 51.1 5.0 26 49-74 31-56 (279)
443 3b85_A Phosphate starvation-in 88.8 0.17 5.7E-06 50.7 2.4 23 49-71 23-45 (208)
444 2afh_E Nitrogenase iron protei 88.6 0.35 1.2E-05 51.2 4.9 27 49-75 3-29 (289)
445 3tif_A Uncharacterized ABC tra 88.6 0.19 6.6E-06 51.3 2.7 23 48-70 31-53 (235)
446 2pcj_A ABC transporter, lipopr 88.4 0.19 6.5E-06 51.0 2.5 22 49-70 31-52 (224)
447 3fdi_A Uncharacterized protein 88.4 0.27 9.1E-06 48.9 3.5 25 49-73 7-31 (201)
448 1pzn_A RAD51, DNA repair and r 88.3 0.47 1.6E-05 51.7 5.8 37 36-72 119-155 (349)
449 3cr8_A Sulfate adenylyltranfer 88.3 0.4 1.4E-05 55.5 5.4 28 48-75 369-396 (552)
450 3zvl_A Bifunctional polynucleo 88.2 0.2 6.9E-06 56.2 2.8 26 47-72 257-282 (416)
451 2cbz_A Multidrug resistance-as 88.1 0.22 7.4E-06 51.1 2.7 25 48-72 31-55 (237)
452 3rfe_A Platelet glycoprotein I 88.0 0.68 2.3E-05 42.2 5.8 53 402-454 12-68 (130)
453 2qi9_C Vitamin B12 import ATP- 88.0 0.22 7.5E-06 51.4 2.7 26 49-74 27-52 (249)
454 2qe7_A ATP synthase subunit al 87.9 1 3.4E-05 50.7 8.1 37 49-87 163-200 (502)
455 2ck3_A ATP synthase subunit al 87.9 0.95 3.2E-05 51.0 7.9 25 49-73 163-188 (510)
456 2axn_A 6-phosphofructo-2-kinas 87.9 0.43 1.5E-05 55.1 5.4 30 47-76 34-63 (520)
457 2d2e_A SUFC protein; ABC-ATPas 87.8 0.27 9.2E-06 50.8 3.2 23 49-71 30-52 (250)
458 2qm8_A GTPase/ATPase; G protei 87.8 0.61 2.1E-05 50.6 6.2 29 46-74 53-81 (337)
459 1ypw_A Transitional endoplasmi 87.8 0.24 8.1E-06 60.8 3.2 53 24-76 476-539 (806)
460 1oix_A RAS-related protein RAB 87.7 0.28 9.6E-06 48.3 3.3 24 48-71 29-52 (191)
461 3gfo_A Cobalt import ATP-bindi 87.7 0.23 7.9E-06 52.0 2.7 22 49-70 35-56 (275)
462 3vr4_D V-type sodium ATPase su 87.7 0.61 2.1E-05 51.8 6.1 26 49-74 152-177 (465)
463 2zu0_C Probable ATP-dependent 87.6 0.28 9.4E-06 51.3 3.2 24 48-71 46-69 (267)
464 1b0u_A Histidine permease; ABC 87.6 0.24 8.2E-06 51.6 2.7 24 48-71 32-55 (262)
465 3gqb_B V-type ATP synthase bet 87.6 0.62 2.1E-05 51.7 6.0 25 49-73 148-172 (464)
466 2pze_A Cystic fibrosis transme 87.5 0.24 8.3E-06 50.4 2.7 24 49-72 35-58 (229)
467 1ji0_A ABC transporter; ATP bi 87.5 0.25 8.4E-06 50.8 2.7 22 49-70 33-54 (240)
468 1sgw_A Putative ABC transporte 87.5 0.21 7.2E-06 50.1 2.1 23 49-71 36-58 (214)
469 2ged_A SR-beta, signal recogni 87.5 0.38 1.3E-05 47.2 4.0 25 47-71 47-71 (193)
470 2dyk_A GTP-binding protein; GT 87.4 0.35 1.2E-05 45.7 3.6 23 49-71 2-24 (161)
471 1mv5_A LMRA, multidrug resista 87.3 0.27 9.1E-06 50.6 2.9 23 48-70 28-50 (243)
472 4g1u_C Hemin import ATP-bindin 87.3 0.25 8.6E-06 51.5 2.7 22 49-70 38-59 (266)
473 2olj_A Amino acid ABC transpor 87.3 0.25 8.7E-06 51.3 2.7 24 48-71 50-73 (263)
474 1g6h_A High-affinity branched- 87.3 0.26 8.7E-06 51.2 2.7 22 49-70 34-55 (257)
475 2v9p_A Replication protein E1; 87.3 0.39 1.3E-05 50.9 4.2 26 47-72 125-150 (305)
476 3upu_A ATP-dependent DNA helic 87.3 0.83 2.8E-05 52.0 7.3 29 49-77 46-74 (459)
477 2wji_A Ferrous iron transport 87.3 0.37 1.2E-05 46.0 3.7 22 49-70 4-25 (165)
478 2ff7_A Alpha-hemolysin translo 87.2 0.26 8.9E-06 50.8 2.7 22 49-70 36-57 (247)
479 2f9l_A RAB11B, member RAS onco 87.1 0.31 1.1E-05 48.2 3.2 24 48-71 5-28 (199)
480 3ld9_A DTMP kinase, thymidylat 87.0 0.45 1.5E-05 48.0 4.2 28 47-74 20-47 (223)
481 1vpl_A ABC transporter, ATP-bi 87.0 0.27 9.3E-06 50.9 2.7 23 48-70 41-63 (256)
482 2ghi_A Transport protein; mult 87.0 0.27 9.3E-06 51.1 2.7 24 49-72 47-70 (260)
483 2r9v_A ATP synthase subunit al 86.9 1.3 4.4E-05 49.8 8.2 37 49-87 176-213 (515)
484 3lv8_A DTMP kinase, thymidylat 86.8 0.52 1.8E-05 48.0 4.7 28 48-75 27-54 (236)
485 4dzz_A Plasmid partitioning pr 86.8 0.49 1.7E-05 47.0 4.5 34 49-82 2-36 (206)
486 3tqf_A HPR(Ser) kinase; transf 86.8 0.38 1.3E-05 45.7 3.3 23 49-71 17-39 (181)
487 2ixe_A Antigen peptide transpo 86.7 0.29 9.9E-06 51.2 2.7 23 48-70 45-67 (271)
488 2zej_A Dardarin, leucine-rich 86.6 0.31 1.1E-05 47.6 2.8 21 50-70 4-24 (184)
489 2gks_A Bifunctional SAT/APS ki 86.6 0.79 2.7E-05 53.1 6.6 27 48-74 372-398 (546)
490 3kjh_A CO dehydrogenase/acetyl 86.6 0.53 1.8E-05 48.5 4.7 26 51-76 3-28 (254)
491 3io3_A DEHA2D07832P; chaperone 86.5 0.68 2.3E-05 50.3 5.7 28 46-73 16-43 (348)
492 1fx0_A ATP synthase alpha chai 86.5 0.9 3.1E-05 51.1 6.7 37 49-87 164-201 (507)
493 2yz2_A Putative ABC transporte 86.4 0.3 1E-05 51.0 2.7 22 49-70 34-55 (266)
494 2ihy_A ABC transporter, ATP-bi 86.4 0.3 1E-05 51.3 2.7 23 49-71 48-70 (279)
495 1m8p_A Sulfate adenylyltransfe 86.4 0.69 2.4E-05 53.9 6.0 28 47-74 395-422 (573)
496 2nq2_C Hypothetical ABC transp 86.4 0.3 1E-05 50.5 2.7 24 49-72 32-55 (253)
497 2c61_A A-type ATP synthase non 86.3 0.78 2.7E-05 51.3 6.0 25 49-73 153-177 (469)
498 3gmt_A Adenylate kinase; ssgci 86.3 0.4 1.4E-05 48.3 3.4 24 49-72 9-32 (230)
499 3zq6_A Putative arsenical pump 86.2 0.51 1.7E-05 50.9 4.5 34 48-81 14-47 (324)
500 1p9r_A General secretion pathw 86.2 1 3.6E-05 50.1 7.1 85 48-146 167-251 (418)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.9e-40 Score=392.08 Aligned_cols=302 Identities=17% Similarity=0.149 Sum_probs=235.4
Q ss_pred ccchhHHHHHHHHhcCC-CCCeeEEEEEcCCcchHHHHHHHHHH----HHhccccceEEEeehhhhhhcCCCHHHHHHHH
Q 048831 28 VGIESRLEKLRFLMGTG-STDVRMIGIWGMGGLGKTTLARVVYD----LISHEFYASSFLADVRERFEKEGSVISLQKQL 102 (1051)
Q Consensus 28 vGr~~~~~~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~v~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 102 (1051)
+||+.++++|.++|..+ .+.+++|+|+|||||||||||+++|+ +++.+|+.++|+ ++++... .+ ...+++++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv-~vs~~~~-~~-~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL-KDSGTAP-KS-TFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE-ECCCCST-TH-HHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEE-EECCCCC-CC-HHHHHHHH
Confidence 49999999999999754 34679999999999999999999996 788999888887 4554321 12 37788899
Q ss_pred HHHHhccCC-Cccc-----cchhhHHHHHHhhCCC-eEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhHhh
Q 048831 103 LSNLLKLGD-ISIW-----HVDDGINIIGSRLRQQ-KVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQLLVAH 175 (1051)
Q Consensus 103 l~~l~~~~~-~~~~-----~~~~~~~~i~~~l~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~ 175 (1051)
+.++..... .... +.......+++.++++ |+||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 988874322 1111 2233578899999996 999999999999876 3332 2799999999999988765
Q ss_pred CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCHHHHHHHHH-HhhcC
Q 048831 176 EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGSFLIGRSVDQWRSALE-RLKRD 254 (1051)
Q Consensus 176 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~~L~~~~~~~w~~~l~-~l~~~ 254 (1051)
+. ...+|+|++|+.+||++||.++||.... .+...+++++|+++|+|+||||+++|+.|+.+. .+|...+. .+...
T Consensus 282 ~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 282 SQ-TCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR 358 (549)
T ss_dssp CS-CEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH
T ss_pred CC-CCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcc
Confidence 42 2237999999999999999999986543 357778999999999999999999999998774 23333333 23332
Q ss_pred CCchHHHHHHHhccCCChhccccee-----------eeecccCCCCHHHHHHHHhhc--CCCcch-----------hhhH
Q 048831 255 PSNKIMSILQISFDGLQDSEKKIFL-----------DVACFFKQKNRDYVTKILEGC--GFFPVI-----------GIEV 310 (1051)
Q Consensus 255 ~~~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~~~~~~--g~~~~~-----------~l~~ 310 (1051)
....+..++++||+.||++.|.||+ |||+||+++..+ +++|.++ ||+... .++.
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~ 436 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKR 436 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHH
Confidence 4567888999999999999999999 999999998777 7889998 777532 4899
Q ss_pred hhccCceeEeCC---CceehhHHHHHHHHHHHhhcC
Q 048831 311 LIERSLLTVDDY---NTLGMHDLLQELGQLIVTRQS 343 (1051)
Q Consensus 311 L~~~sLi~~~~~---~~~~mHdll~~~~~~i~~~e~ 343 (1051)
|++++|++.... .+|.|||++|+||+.++.+++
T Consensus 437 L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999999998642 469999999999998887653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-34 Score=382.43 Aligned_cols=310 Identities=17% Similarity=0.236 Sum_probs=246.6
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHH---HhccccceEEEeehhhhhhcCCCH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDL---ISHEFYASSFLADVRERFEKEGSV 95 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 95 (1051)
..|+.+..||||+.++++|.++|....+++++|+|+||||+||||||+++|++ ...+|...+||..++..... ..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~- 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS-GL- 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH-HH-
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch-HH-
Confidence 46677788999999999999999766667899999999999999999999976 46678888877766553221 11
Q ss_pred HHHHHHHHHHHhccCC---CccccchhhHHHHHHhhCCC--eEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 96 ISLQKQLLSNLLKLGD---ISIWHVDDGINIIGSRLRQQ--KVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~---~~~~~~~~~~~~i~~~l~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
.....+++..+..... ....+.+.....+++.+.++ |+||||||||+.++|+.+ ++|++||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 3345556666653221 11234455667777777776 999999999999887664 57999999999998
Q ss_pred hhHhhCCCCcceEEcCC-CChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCHHHHHHHHH
Q 048831 171 LLVAHEVDEEHILNLDV-LNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGSFLIGRSVDQWRSALE 249 (1051)
Q Consensus 171 ~~~~~~~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~~L~~~~~~~w~~~l~ 249 (1051)
++.... .....+++.+ |+.+||++||...++... +.+.+.+++|+++|+|+||||+++|++|+.+. ..|...++
T Consensus 269 ~~~~~~-~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~ 343 (1249)
T 3sfz_A 269 VTDSVM-GPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLR 343 (1249)
T ss_dssp TTTTCC-SCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHH
T ss_pred HHHhhc-CCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHH
Confidence 874322 2223799996 999999999999885432 33446789999999999999999999998765 46999998
Q ss_pred HhhcCCC-----------chHHHHHHHhccCCChhcccceeeeecccCCC--CHHHHHHHHhhcCCCcchhhhHhhccCc
Q 048831 250 RLKRDPS-----------NKIMSILQISFDGLQDSEKKIFLDVACFFKQK--NRDYVTKILEGCGFFPVIGIEVLIERSL 316 (1051)
Q Consensus 250 ~l~~~~~-----------~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~~~l~~L~~~sL 316 (1051)
.+..... ..+..+|++||+.|++++|.||+++|+||+++ +.+.++.+|.+++......++.|++++|
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl 423 (1249)
T 3sfz_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSL 423 (1249)
T ss_dssp HHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccc
Confidence 8865331 35899999999999999999999999999885 7789999998877777788999999999
Q ss_pred eeEeCCCc---eehhHHHHHHHHHHHhhc
Q 048831 317 LTVDDYNT---LGMHDLLQELGQLIVTRQ 342 (1051)
Q Consensus 317 i~~~~~~~---~~mHdll~~~~~~i~~~e 342 (1051)
++....+. |.||+++|+++++.+.++
T Consensus 424 ~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 424 LFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred eEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99876554 999999999999886554
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.1e-34 Score=343.12 Aligned_cols=280 Identities=19% Similarity=0.182 Sum_probs=214.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHH--HHhccccceEEEeehhhhhhcCCCHHHHHHHHH
Q 048831 26 ELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYD--LISHEFYASSFLADVRERFEKEGSVISLQKQLL 103 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 103 (1051)
..|||+.++++|.++|... +.+++|+|+||||+||||||+++|+ +++.+|+..++|.+++...+ ...+...++
T Consensus 129 ~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d----~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS----PETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS----HHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC----HHHHHHHHH
Confidence 3499999999999998753 3478999999999999999999997 57889998777776765432 244555555
Q ss_pred HHHhccC---C--C-----ccccchhhHHHHHHhh---CCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 104 SNLLKLG---D--I-----SIWHVDDGINIIGSRL---RQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 104 ~~l~~~~---~--~-----~~~~~~~~~~~i~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
..+.... . . ...+.+.....+++.+ +++|+||||||||+.++|+.+. +|++||||||++.
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChH
Confidence 4432111 0 0 0112233455566655 6799999999999999998763 6999999999998
Q ss_pred hhHhhCCCCcceEEcC------CCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHHHhcCC--CHH
Q 048831 171 LLVAHEVDEEHILNLD------VLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGSFLIGR--SVD 242 (1051)
Q Consensus 171 ~~~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~~L~~~--~~~ 242 (1051)
++....... .|+|+ +|+.+||++||.++. +.. ..++..+| |+|+||||+++|+.|+++ +.+
T Consensus 277 Va~~l~g~~--vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 277 VTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp HHHHHHHHS--SCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH
T ss_pred HHHhcCCCe--EEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH
Confidence 875433222 46666 999999999999884 322 12333343 999999999999999876 678
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHhccCCChhc-ccceeeeecccCCC--CHHHHHHHHhhcCC-CcchhhhHhhccCcee
Q 048831 243 QWRSALERLKRDPSNKIMSILQISFDGLQDSE-KKIFLDVACFFKQK--NRDYVTKILEGCGF-FPVIGIEVLIERSLLT 318 (1051)
Q Consensus 243 ~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~--~~~~l~~~~~~~g~-~~~~~l~~L~~~sLi~ 318 (1051)
+|+.. ....+..+|+.||+.|++++ |+||+++|+||+++ +.+.+..+|.++|. .+...++.|+++||++
T Consensus 346 eW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq 418 (1221)
T 1vt4_I 346 NWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418 (1221)
T ss_dssp HHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSS
T ss_pred HHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEE
Confidence 88753 35789999999999999999 99999999999876 56778999998753 3456789999999999
Q ss_pred EeC-CCceehhHHHHHHH
Q 048831 319 VDD-YNTLGMHDLLQELG 335 (1051)
Q Consensus 319 ~~~-~~~~~mHdll~~~~ 335 (1051)
... .++|.|||++++++
T Consensus 419 ~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 419 KQPKESTISIPSIYLELK 436 (1221)
T ss_dssp BCSSSSEEBCCCHHHHHH
T ss_pred EeCCCCEEEehHHHHHHh
Confidence 863 56899999998844
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=341.20 Aligned_cols=334 Identities=17% Similarity=0.199 Sum_probs=246.3
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH---hccccceEEEeehhhhhhcCCCH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI---SHEFYASSFLADVRERFEKEGSV 95 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~---~~~f~~~~~~~~~~~~~~~~~~~ 95 (1051)
..|+.+..||||+.++++|.++|....++.++|+|+||||+||||||++++++. +.+|+..+||..+..... ..+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~-~~~- 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK-SGL- 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH-HHH-
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch-HHH-
Confidence 457778889999999999999998655667999999999999999999999753 678876666655543211 111
Q ss_pred HHHHHHHHHHHhccC---CCccccchhhHHHHHHhhCC--CeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 96 ISLQKQLLSNLLKLG---DISIWHVDDGINIIGSRLRQ--QKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~---~~~~~~~~~~~~~i~~~l~~--k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
.....++...+.... .....+.......+.+.+.+ +++||||||||+..+++.+ ++|++||||||+..
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 111222333333111 11223445556667777765 7899999999998776643 57899999999998
Q ss_pred hhHhhCCCCcceEEc---CCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCHHHHHHH
Q 048831 171 LLVAHEVDEEHILNL---DVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGSFLIGRSVDQWRSA 247 (1051)
Q Consensus 171 ~~~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~~L~~~~~~~w~~~ 247 (1051)
++.... .. .+++ ++|+.+|+++||...++.. .....+.+++|+++|+|+||||+++|+.++.+. .+|...
T Consensus 269 ~~~~~~-~~--~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~ 341 (591)
T 1z6t_A 269 VTDSVM-GP--KYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYY 341 (591)
T ss_dssp GGTTCC-SC--EEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHhcC-CC--ceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHH
Confidence 765433 22 4555 5899999999999988642 222346789999999999999999999998764 369888
Q ss_pred HHHhhcCC-----------CchHHHHHHHhccCCChhcccceeeeecccCCC--CHHHHHHHHhhcCCCcchhhhHhhcc
Q 048831 248 LERLKRDP-----------SNKIMSILQISFDGLQDSEKKIFLDVACFFKQK--NRDYVTKILEGCGFFPVIGIEVLIER 314 (1051)
Q Consensus 248 l~~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~~~l~~L~~~ 314 (1051)
++.+.... ...+..++..||+.|++++|.||+++|+|+++. +.+.+..+|..++......++.|+++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~ 421 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNK 421 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhC
Confidence 88876432 247899999999999999999999999999864 66788888876654556779999999
Q ss_pred CceeEeCC---CceehhHHHHHHHHHHHhh------------cC-------CCCCCCcccccchhHHHHHHhcCCC
Q 048831 315 SLLTVDDY---NTLGMHDLLQELGQLIVTR------------QS-------PEEPGKRSRLWRQEEVRHVLTKNAG 368 (1051)
Q Consensus 315 sLi~~~~~---~~~~mHdll~~~~~~i~~~------------e~-------~~~~~~~~~l~~~~~i~~~l~~~~~ 368 (1051)
+|++...+ ..|.||+++|+++++.... .. ...++.+..+|..+.+.|++..+..
T Consensus 422 ~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~ 497 (591)
T 1z6t_A 422 SLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMH 497 (591)
T ss_dssp TSSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred cCeEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCH
Confidence 99987543 2699999999999876221 11 1223345566777788888876653
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-32 Score=332.30 Aligned_cols=346 Identities=17% Similarity=0.212 Sum_probs=296.6
Q ss_pred CCCCCCCCCCC-CCCCeeEEEcCccCccc------------------cccccc--CCCCCCEEecCCCCCCCCCCC-CCC
Q 048831 428 RYPLKSLPSNL-QLDKIVEFQMCYSHIEE------------------LWKGIK--PLNTLKVMKLSHSENLIKTPN-FIE 485 (1051)
Q Consensus 428 ~~~l~~lp~~~-~~~~L~~L~l~~~~i~~------------------l~~~~~--~l~~L~~L~L~~~~~l~~~~~-~~~ 485 (1051)
++.++.+|..+ .+.+|++|++++|.+.. +|..+. .+++|++|++++|.....+|. +++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 34555688888 89999999999999998 999998 999999999999988777775 899
Q ss_pred CCccCEEEeeCCC-CCh-hhhhhhccC------CCCcEEecCCCCCCCccCCCCCCCCCcc--ccccCceecEEeeeCCC
Q 048831 486 VPNLEVLDLKGCT-SLR-EIHSSLLRH------NKLILLNLKGCTSLTTLPDCKNLSSLPV--TISSLKCLRTLKLSGCS 555 (1051)
Q Consensus 486 l~~L~~L~L~~c~-~l~-~l~~si~~l------~~L~~L~L~~c~~l~~l~~~~~l~~lp~--~l~~l~~L~~L~Ls~c~ 555 (1051)
+++|++|++++|. .-. .+|..++.+ ++|+.|++++| .+..+|. .++++++|++|++++|.
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n----------~l~~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN----------NLKTFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS----------CCSSCCCHHHHTTCTTCCEEECCSCC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC----------cCCccCchhhhccCCCCCEEeCcCCc
Confidence 9999999999987 444 699998887 99999999984 4456777 78899999999999998
Q ss_pred CCCcCchhhCCCCCCCEEEecCccCcccCccccCCCC-CCEEecCCCCCCCcccccccCCC--CCCEEeccCCCCCCcCC
Q 048831 556 KLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTG-LELLNLNDCKNLVRLPNSINGLK--SLKTLNLSGCCKLENVP 632 (1051)
Q Consensus 556 ~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~L~~c~~l~~lp 632 (1051)
..+.+| .++.+++|++|++++|.+..+|..+..+++ |+.|++++|... .+|..+..++ +|+.|++++|.....+|
T Consensus 342 l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 342 LEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp CEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred Cccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 777899 889999999999999999999999999999 999999998855 8898887655 99999999999988888
Q ss_pred cccC-------CCCCccEEEccCCCCcCCCccccc-ccCCcEEEccCCCCCCCCCcccCC-c--------cccccccCCC
Q 048831 633 DTLG-------QVESLEELDISGTATRRPPSSIFL-MKNLKTLSFSGCNGPPSTASCHLN-L--------PFNLMRKSSC 695 (1051)
Q Consensus 633 ~~l~-------~l~~L~~L~l~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~-~--------~~~~l~~~~~ 695 (1051)
..+. .+++|+.|++++|.+..+|..+.. +++|+.|++++|... ..+..... . .+..+.+..+
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence 8888 788999999999999999987654 899999999999876 33322211 1 5666777777
Q ss_pred CccccCCCCC--CCCCCCEEeccCCCCCCccccccccCCCcCcEEeccC------CCce-eccccccCCCCCCEEeccCC
Q 048831 696 PVALMLPSLS--GLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSG------NNFV-TLPASISGLFNLKYLELEDC 766 (1051)
Q Consensus 696 ~~~~~~~~l~--~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~------n~l~-~lp~~~~~l~~L~~L~l~~c 766 (1051)
....+|..+. .+++|+.|+|++|++.. +|..+..+++|+.|+|++ |++. .+|..+..+++|+.|++++|
T Consensus 499 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CCCBCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred cCCccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 7777887776 89999999999999974 888899999999999954 5544 78889999999999999999
Q ss_pred ccccccCC-CCCCCceEeecCCcc
Q 048831 767 KRLQSLPQ-LPPNVIKVSVNGCAS 789 (1051)
Q Consensus 767 ~~L~~lp~-lp~~L~~L~i~~C~~ 789 (1051)
+. +.+|. ++++|+.|++.+|+-
T Consensus 577 ~l-~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 577 DI-RKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp CC-CBCCSCCCTTCCEEECCSCTT
T ss_pred cC-CccCHhHhCcCCEEECcCCCC
Confidence 85 88886 678999999998864
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=5.5e-32 Score=337.11 Aligned_cols=404 Identities=20% Similarity=0.213 Sum_probs=309.8
Q ss_pred chhhhcCCCCCcEEEecCcccCCcccc-cCcCceEEEEcCCCCC-CCCCCC-C-CCCeeEEEcCccCcc-cccccccCCC
Q 048831 390 SAKAFSLMTNLRFLNIGNVQLPEGLEY-LSNKLRLLNWHRYPLK-SLPSNL-Q-LDKIVEFQMCYSHIE-ELWKGIKPLN 464 (1051)
Q Consensus 390 ~~~~f~~~~~Lr~L~l~~~~l~~~~~~-l~~~Lr~L~l~~~~l~-~lp~~~-~-~~~L~~L~l~~~~i~-~l~~~~~~l~ 464 (1051)
.+..|..+++|+.|++++|.+.+.+.. ...+|++|++.+|.+. .+|..+ . +.+|++|++++|.+. .+|..+..++
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 356677777777777777765322111 2346788888888776 777776 3 478888888888877 5567788888
Q ss_pred CCCEEecCCCCCCCCCCC--CCCCCccCEEEeeCCCCChhhhhhhccCC-CCcEEecCCCCCCCccCCC-----------
Q 048831 465 TLKVMKLSHSENLIKTPN--FIEVPNLEVLDLKGCTSLREIHSSLLRHN-KLILLNLKGCTSLTTLPDC----------- 530 (1051)
Q Consensus 465 ~L~~L~L~~~~~l~~~~~--~~~l~~L~~L~L~~c~~l~~l~~si~~l~-~L~~L~L~~c~~l~~l~~~----------- 530 (1051)
+|++|++++|.....+|. +.++++|++|++++|.....+|..+..+. +|+.|++++|.-...++..
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 888888888876545553 77888888888888765557777777776 8888888776422111110
Q ss_pred -----CCC-CCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCc-ccCccccCCCCCCEEecCCCCC
Q 048831 531 -----KNL-SSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYIT-EVPSSIELLTGLELLNLNDCKN 603 (1051)
Q Consensus 531 -----~~l-~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~ 603 (1051)
..+ ..+|..+.++++|++|++++|...+.+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|..
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 011 246778888999999999999888888999999999999999999998 6788899999999999999988
Q ss_pred CCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCc-CCCcccccccCCcEEEccCCCCCCCCCccc
Q 048831 604 LVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATR-RPPSSIFLMKNLKTLSFSGCNGPPSTASCH 682 (1051)
Q Consensus 604 l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 682 (1051)
.+.+|..+.++++|+.|++++|.....+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|+.....+...
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 8889999999999999999999988899999999999999999999976 678899999999999999987654443221
Q ss_pred CCccc----cc-------------------------------------------cccC-CCCccccCCCCCCCCCCCEEe
Q 048831 683 LNLPF----NL-------------------------------------------MRKS-SCPVALMLPSLSGLCSLSKLD 714 (1051)
Q Consensus 683 ~~~~~----~~-------------------------------------------l~~~-~~~~~~~~~~l~~l~~L~~L~ 714 (1051)
..... .. .... ....+.+|..+..+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 11000 00 0000 111234566788889999999
Q ss_pred ccCCCCCCccccccccCCCcCcEEeccCCCce-eccccccCCCCCCEEeccCCccccccCCC---CCCCceEeecCCccc
Q 048831 715 LSDCGLREGAILSDICNLHSLKELYLSGNNFV-TLPASISGLFNLKYLELEDCKRLQSLPQL---PPNVIKVSVNGCASL 790 (1051)
Q Consensus 715 L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~i~~C~~L 790 (1051)
|++|++. +.+|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|+.-+.+|.. .++|+.|++.++.=-
T Consensus 639 Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 639 MSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 9999986 578999999999999999999998 78999999999999999999987788863 367899999988643
Q ss_pred cccc
Q 048831 791 LTLL 794 (1051)
Q Consensus 791 ~~~~ 794 (1051)
..+|
T Consensus 718 g~iP 721 (768)
T 3rgz_A 718 GPIP 721 (768)
T ss_dssp EECC
T ss_pred ccCC
Confidence 3343
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.6e-30 Score=320.64 Aligned_cols=344 Identities=16% Similarity=0.206 Sum_probs=285.5
Q ss_pred CCCCCCCCCC-CCCCeeEEEcCccCccc------------------cccccc--CCCCCCEEecCCCCCCCCCCC-CCCC
Q 048831 429 YPLKSLPSNL-QLDKIVEFQMCYSHIEE------------------LWKGIK--PLNTLKVMKLSHSENLIKTPN-FIEV 486 (1051)
Q Consensus 429 ~~l~~lp~~~-~~~~L~~L~l~~~~i~~------------------l~~~~~--~l~~L~~L~L~~~~~l~~~~~-~~~l 486 (1051)
|.+..+|..+ .+.+|++|++++|.+.. +|..+. .+++|++|+|++|.....+|. +.++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 3444488887 89999999999999998 899887 999999999999987777775 8899
Q ss_pred CccCEEEeeCCCCCh--hhhhhhccCC-------CCcEEecCCCCCCCccCCCCCCCCCcc--ccccCceecEEeeeCCC
Q 048831 487 PNLEVLDLKGCTSLR--EIHSSLLRHN-------KLILLNLKGCTSLTTLPDCKNLSSLPV--TISSLKCLRTLKLSGCS 555 (1051)
Q Consensus 487 ~~L~~L~L~~c~~l~--~l~~si~~l~-------~L~~L~L~~c~~l~~l~~~~~l~~lp~--~l~~l~~L~~L~Ls~c~ 555 (1051)
++|++|+|++|..+. .+|..++.+. +|+.|++++| .+..+|. .++++++|++|+|++|.
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N----------~L~~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN----------NLEEFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS----------CCCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC----------cCCccCChhhhhcCCCCCEEECCCCC
Confidence 999999999987344 5888777665 9999999984 4456777 78889999999999987
Q ss_pred CCCcCchhhCCCCCCCEEEecCccCcccCccccCCCC-CCEEecCCCCCCCcccccccCCCC--CCEEeccCCCCCCcCC
Q 048831 556 KLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTG-LELLNLNDCKNLVRLPNSINGLKS--LKTLNLSGCCKLENVP 632 (1051)
Q Consensus 556 ~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~i~~L~~--L~~L~L~~c~~l~~lp 632 (1051)
.. .+| .++.+++|+.|++++|.+..+|..+..+++ |+.|+|++|... .+|..+..++. |+.|++++|.....+|
T Consensus 585 l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 585 VR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred cc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence 66 888 889999999999999999999999999999 999999998854 88888877654 9999999998776555
Q ss_pred c---ccC--CCCCccEEEccCCCCcCCCcccc-cccCCcEEEccCCCCCCCCCcccCC-c--------cccccccCCCCc
Q 048831 633 D---TLG--QVESLEELDISGTATRRPPSSIF-LMKNLKTLSFSGCNGPPSTASCHLN-L--------PFNLMRKSSCPV 697 (1051)
Q Consensus 633 ~---~l~--~l~~L~~L~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~-~--------~~~~l~~~~~~~ 697 (1051)
. .++ .+++|+.|++++|.+..+|..+. .+++|+.|++++|... ..+..... . .+..+.+.++..
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L 740 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCC
Confidence 3 233 34589999999999999998776 7899999999999766 33332221 1 566677777777
Q ss_pred cccCCCCC--CCCCCCEEeccCCCCCCccccccccCCCcCcEEeccC------CCce-eccccccCCCCCCEEeccCCcc
Q 048831 698 ALMLPSLS--GLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSG------NNFV-TLPASISGLFNLKYLELEDCKR 768 (1051)
Q Consensus 698 ~~~~~~l~--~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~------n~l~-~lp~~~~~l~~L~~L~l~~c~~ 768 (1051)
..+|..+. .+++|+.|+|++|++.. +|..+..+++|+.|+|++ |++. .+|..+..+++|+.|+|++|+.
T Consensus 741 ~~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 741 TSLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ccchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 77787776 89999999999999875 788889999999999976 5544 6788999999999999999985
Q ss_pred ccccCC-CCCCCceEeecCCcc
Q 048831 769 LQSLPQ-LPPNVIKVSVNGCAS 789 (1051)
Q Consensus 769 L~~lp~-lp~~L~~L~i~~C~~ 789 (1051)
+.+|. ++++|+.|++.+|+-
T Consensus 819 -~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 819 -RKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp -CBCCSCCCSSSCEEECCSCTT
T ss_pred -CccCHhhcCCCCEEECCCCCC
Confidence 88886 778999999999874
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.2e-30 Score=322.72 Aligned_cols=391 Identities=21% Similarity=0.181 Sum_probs=262.5
Q ss_pred hcCCCCCcEEEecCcccCCccc---ccCcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcc-cccccccCC-CCCCE
Q 048831 394 FSLMTNLRFLNIGNVQLPEGLE---YLSNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIE-ELWKGIKPL-NTLKV 468 (1051)
Q Consensus 394 f~~~~~Lr~L~l~~~~l~~~~~---~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~-~l~~~~~~l-~~L~~ 468 (1051)
|..+++|+.|++++|.+.+.+. .-..+|++|++++|.+....+...+.+|++|++++|.+. .+|..+... ++|++
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~ 298 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSE
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCE
Confidence 6667777777777776643221 112357777777777664333346777777777777776 566666554 77777
Q ss_pred EecCCCCCCCCCC-CCCCCCccCEEEeeCCCCChhhhhh-hccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCc-e
Q 048831 469 MKLSHSENLIKTP-NFIEVPNLEVLDLKGCTSLREIHSS-LLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLK-C 545 (1051)
Q Consensus 469 L~L~~~~~l~~~~-~~~~l~~L~~L~L~~c~~l~~l~~s-i~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~-~ 545 (1051)
|++++|.....+| .++++++|++|+|++|.....+|.. +..+++|+.|++++|.-.. .+|..+..++ +
T Consensus 299 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~---------~~p~~l~~l~~~ 369 (768)
T 3rgz_A 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG---------ELPESLTNLSAS 369 (768)
T ss_dssp EECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE---------CCCTTHHHHTTT
T ss_pred EECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc---------cccHHHHhhhcC
Confidence 7777776654444 3777777888888776655566655 7777788888877753221 3444555555 6
Q ss_pred ecEEeeeCCCCCCcCchhhCC--CCCCCEEEecCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEec
Q 048831 546 LRTLKLSGCSKLKKFPAIVAS--MEDLSELYLDGTYIT-EVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNL 622 (1051)
Q Consensus 546 L~~L~Ls~c~~~~~~p~~~~~--l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 622 (1051)
|++|++++|...+.+|..+.. +++|++|++++|.+. .+|..+.++++|+.|++++|...+.+|..+..+++|+.|++
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence 777777766655555555555 566777777777666 55666667777777777776666666666667777777777
Q ss_pred cCCCCCCcCCcccCCCCCccEEEccCCCCc-CCCcccccccCCcEEEccCCCCCCCCCccc-CCccccccccCCCCcc-c
Q 048831 623 SGCCKLENVPDTLGQVESLEELDISGTATR-RPPSSIFLMKNLKTLSFSGCNGPPSTASCH-LNLPFNLMRKSSCPVA-L 699 (1051)
Q Consensus 623 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~ 699 (1051)
++|.....+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|+.....+... ....+..+.+.++... .
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 776666666666666777777777777655 446666667777777777766554433321 1223444555555443 5
Q ss_pred cCCCCCCCCCCCEEeccCCCCCCcccc-----------------------------------------------------
Q 048831 700 MLPSLSGLCSLSKLDLSDCGLREGAIL----------------------------------------------------- 726 (1051)
Q Consensus 700 ~~~~l~~l~~L~~L~L~~~~l~~~~~~----------------------------------------------------- 726 (1051)
+|..+.++++|+.|++++|++. +.+|
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEE-SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred CCHHHcCCCCCCEEECCCCccC-CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 5667888889999999888764 2223
Q ss_pred -----------------ccccCCCcCcEEeccCCCce-eccccccCCCCCCEEeccCCccccccCC---CCCCCceEeec
Q 048831 727 -----------------SDICNLHSLKELYLSGNNFV-TLPASISGLFNLKYLELEDCKRLQSLPQ---LPPNVIKVSVN 785 (1051)
Q Consensus 727 -----------------~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~c~~L~~lp~---lp~~L~~L~i~ 785 (1051)
..++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|...+.+|. -.++|+.|++.
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 23445688999999999998 7899999999999999999998888885 23689999999
Q ss_pred CCccccccc
Q 048831 786 GCASLLTLL 794 (1051)
Q Consensus 786 ~C~~L~~~~ 794 (1051)
++.--..+|
T Consensus 689 ~N~l~g~ip 697 (768)
T 3rgz_A 689 SNKLDGRIP 697 (768)
T ss_dssp SSCCEECCC
T ss_pred CCcccCcCC
Confidence 886433333
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.4e-28 Score=299.47 Aligned_cols=406 Identities=20% Similarity=0.208 Sum_probs=292.5
Q ss_pred ccccceeeechhhhcCCCCCcEEEecCcccC----CcccccCcCceEEEEcCCCCCCCC-CCC-CCCCeeEEEcCccCcc
Q 048831 381 FFLKNEVRLSAKAFSLMTNLRFLNIGNVQLP----EGLEYLSNKLRLLNWHRYPLKSLP-SNL-QLDKIVEFQMCYSHIE 454 (1051)
Q Consensus 381 ~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~lp-~~~-~~~~L~~L~l~~~~i~ 454 (1051)
++......+.+.+|.++++|++|++++|.+. ..+..+ .+|++|++++|.+..++ ..+ .+.+|++|++++|.+.
T Consensus 40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 118 (606)
T 3t6q_A 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118 (606)
T ss_dssp CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS
T ss_pred ccCCccCcCChhHhccCccceEEECCCCccceeChhhccCc-cccCeeeCCCCcccccChhhhcccccccEeeccccCcc
Confidence 3444444566789999999999999998763 334444 47999999999998774 455 8999999999999999
Q ss_pred cc-cccccCCCCCCEEecCCCCCCC-CCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCc--EEecCCCCCCCccCCC
Q 048831 455 EL-WKGIKPLNTLKVMKLSHSENLI-KTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLI--LLNLKGCTSLTTLPDC 530 (1051)
Q Consensus 455 ~l-~~~~~~l~~L~~L~L~~~~~l~-~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~--~L~L~~c~~l~~l~~~ 530 (1051)
.+ +..+..+++|++|++++|.... ..|.+..+++|++|++++|......+..+..+.+|+ .|+++++.--...|..
T Consensus 119 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 88 5678999999999999998665 447777799999999999765544567788899998 8888886433222211
Q ss_pred CCCC---------------------------------------CC-ccccccCc--eecEEeeeCCCCCCcCchhhCCCC
Q 048831 531 KNLS---------------------------------------SL-PVTISSLK--CLRTLKLSGCSKLKKFPAIVASME 568 (1051)
Q Consensus 531 ~~l~---------------------------------------~l-p~~l~~l~--~L~~L~Ls~c~~~~~~p~~~~~l~ 568 (1051)
.... .+ +..+..+. +|++|++++|......+..+..++
T Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~ 278 (606)
T 3t6q_A 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278 (606)
T ss_dssp TTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred hhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc
Confidence 1000 00 01111121 788888888876666666688889
Q ss_pred CCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcc-cCCCCCccEEEcc
Q 048831 569 DLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDT-LGQVESLEELDIS 647 (1051)
Q Consensus 569 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~ 647 (1051)
+|++|++++|.++.+|..+..+++|++|++++|......|..+..+++|++|++++|.....+|.. ++.+++|++|+++
T Consensus 279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 358 (606)
T 3t6q_A 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358 (606)
T ss_dssp TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence 999999999999988888888999999999988776666778888899999999888777566544 7888889999998
Q ss_pred CCCCcCC---CcccccccCCcEEEccCCCCCCCCCcc-cCCccccccccCCCCcccc-C-CCCCCCCCCCEEeccCCCCC
Q 048831 648 GTATRRP---PSSIFLMKNLKTLSFSGCNGPPSTASC-HLNLPFNLMRKSSCPVALM-L-PSLSGLCSLSKLDLSDCGLR 721 (1051)
Q Consensus 648 ~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~-~-~~l~~l~~L~~L~L~~~~l~ 721 (1051)
+|.+... +..+..+++|+.|++++|......+.. .....+..+....+..... + ..+.++++|+.|++++|.+.
T Consensus 359 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence 8887665 567788888888888888754332211 1122344455555554333 2 23677788888888888774
Q ss_pred CccccccccCCCcCcEEeccCCCcee--c--cccccCCCCCCEEeccCCccccccCC---CCCCCceEeecCCc
Q 048831 722 EGAILSDICNLHSLKELYLSGNNFVT--L--PASISGLFNLKYLELEDCKRLQSLPQ---LPPNVIKVSVNGCA 788 (1051)
Q Consensus 722 ~~~~~~~l~~l~~L~~L~L~~n~l~~--l--p~~~~~l~~L~~L~l~~c~~L~~lp~---lp~~L~~L~i~~C~ 788 (1051)
...+..+..+++|++|++++|.+.. + +..+..+++|+.|++++|......|. -.++|+.|++.+|.
T Consensus 439 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 439 -ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp -TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred -CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 3456667778888888888887764 2 24567788888888888764333333 22577777777763
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=3.2e-29 Score=304.74 Aligned_cols=338 Identities=16% Similarity=0.183 Sum_probs=273.6
Q ss_pred hhhhcCCCCCcEEEecCcccCC------------------ccccc----CcCceEEEEcCCCC-CCCCCCC-CCCCeeEE
Q 048831 391 AKAFSLMTNLRFLNIGNVQLPE------------------GLEYL----SNKLRLLNWHRYPL-KSLPSNL-QLDKIVEF 446 (1051)
Q Consensus 391 ~~~f~~~~~Lr~L~l~~~~l~~------------------~~~~l----~~~Lr~L~l~~~~l-~~lp~~~-~~~~L~~L 446 (1051)
+..|.++++|+.|++++|.+.+ .+..+ ..+|++|++++|.+ ..+|..+ .+++|++|
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 4578999999999999987655 22222 24799999999874 5788777 79999999
Q ss_pred EcCccC-cc--cccccccCC------CCCCEEecCCCCCCCCCCC---CCCCCccCEEEeeCCCCChhhhhhhccCCCCc
Q 048831 447 QMCYSH-IE--ELWKGIKPL------NTLKVMKLSHSENLIKTPN---FIEVPNLEVLDLKGCTSLREIHSSLLRHNKLI 514 (1051)
Q Consensus 447 ~l~~~~-i~--~l~~~~~~l------~~L~~L~L~~~~~l~~~~~---~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~ 514 (1051)
++++|+ +. .+|..+..+ ++|++|++++|... .+|. ++++++|++|++++|.....+| .+..+++|+
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 999998 77 488877766 89999999999776 6665 8899999999999876555888 888899999
Q ss_pred EEecCCCCCCCccCCCCCCCCCccccccCce-ecEEeeeCCCCCCcCchhhCCCC--CCCEEEecCccCcc-cCcccc--
Q 048831 515 LLNLKGCTSLTTLPDCKNLSSLPVTISSLKC-LRTLKLSGCSKLKKFPAIVASME--DLSELYLDGTYITE-VPSSIE-- 588 (1051)
Q Consensus 515 ~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~-L~~L~Ls~c~~~~~~p~~~~~l~--~L~~L~L~~~~i~~-lp~~i~-- 588 (1051)
.|+++++ .+..+|..+..+++ |++|++++|... .+|..+..+. +|++|++++|.+.. +|..+.
T Consensus 357 ~L~L~~N----------~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 357 SLNLAYN----------QITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp EEECCSS----------EEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred EEECCCC----------ccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 9999874 34466777888888 999999998755 8888777655 89999999999874 566676
Q ss_pred -----CCCCCCEEecCCCCCCCccccc-ccCCCCCCEEeccCCCCCCcCCcccCC--------CCCccEEEccCCCCcCC
Q 048831 589 -----LLTGLELLNLNDCKNLVRLPNS-INGLKSLKTLNLSGCCKLENVPDTLGQ--------VESLEELDISGTATRRP 654 (1051)
Q Consensus 589 -----~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~l~~--------l~~L~~L~l~~~~~~~~ 654 (1051)
.+++|+.|++++|... .+|.. +..+++|+.|++++|... .+|..... +++|+.|++++|.+..+
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 503 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBC
T ss_pred ccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCcc
Confidence 7789999999998755 56654 456899999999998765 66654433 23899999999999999
Q ss_pred Ccccc--cccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccC------CCCCCcccc
Q 048831 655 PSSIF--LMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSD------CGLREGAIL 726 (1051)
Q Consensus 655 ~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~------~~l~~~~~~ 726 (1051)
|..+. .+++|+.|++++|.... +|..+.++++|+.|+|++ |++. +.+|
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~l~~-----------------------ip~~~~~l~~L~~L~Ls~N~~ls~N~l~-~~~p 559 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNSFSK-----------------------FPTQPLNSSTLKGFGIRNQRDAQGNRTL-REWP 559 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-----------------------CCCGGGGCSSCCEEECCSCBCTTCCBCC-CCCC
T ss_pred ChhhhhccCCCcCEEECCCCCCCC-----------------------cChhhhcCCCCCEEECCCCcccccCccc-ccCh
Confidence 98887 89999999999887543 266778899999999954 5554 4688
Q ss_pred ccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCccc
Q 048831 727 SDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKRL 769 (1051)
Q Consensus 727 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L 769 (1051)
..++.+++|+.|+|++|.+..+|..+. ++|+.|++++|+..
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp TTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTC
T ss_pred HHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCc
Confidence 899999999999999999999998865 89999999999743
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.8e-28 Score=295.74 Aligned_cols=383 Identities=19% Similarity=0.176 Sum_probs=194.6
Q ss_pred eeeechhhhcCCCCCcEEEecCcccCC----cccccCcCceEEEEcCCCCCCC-CCCC-CCCCeeEEEcCccCccccc-c
Q 048831 386 EVRLSAKAFSLMTNLRFLNIGNVQLPE----GLEYLSNKLRLLNWHRYPLKSL-PSNL-QLDKIVEFQMCYSHIEELW-K 458 (1051)
Q Consensus 386 ~~~~~~~~f~~~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~l~~~~i~~l~-~ 458 (1051)
...+...+|.++++|+.|++++|.+.. .+..+ .+|++|++++|.+..+ |..| .+.+|++|++++|.+..++ .
T Consensus 44 l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 122 (606)
T 3vq2_A 44 LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSS
T ss_pred cCEeChhhccCCccCcEEeCCCCcccccCHHHhhch-hhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccc
Confidence 344555677777777777777776432 22222 3677777777777776 4555 6777777777777777666 4
Q ss_pred cccCCCCCCEEecCCCCCCC-CCC-CCCCCCccCEEEeeCCCCChhhhhhhccCCCC----cEEecCCCCCCCccCCCCC
Q 048831 459 GIKPLNTLKVMKLSHSENLI-KTP-NFIEVPNLEVLDLKGCTSLREIHSSLLRHNKL----ILLNLKGCTSLTTLPDCKN 532 (1051)
Q Consensus 459 ~~~~l~~L~~L~L~~~~~l~-~~~-~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L----~~L~L~~c~~l~~l~~~~~ 532 (1051)
.+..+++|++|++++|.... .+| .++++++|++|++++|......+..+..+.+| ..|+++++.
T Consensus 123 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~---------- 192 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP---------- 192 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC----------
T ss_pred ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC----------
Confidence 57777777777777776543 333 37777777777777764333223333333322 245554421
Q ss_pred CCCCccccccCceecEEeeeCCCCC-------------------------------------------------------
Q 048831 533 LSSLPVTISSLKCLRTLKLSGCSKL------------------------------------------------------- 557 (1051)
Q Consensus 533 l~~lp~~l~~l~~L~~L~Ls~c~~~------------------------------------------------------- 557 (1051)
+..+|.......+|++|++++|...
T Consensus 193 l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 272 (606)
T 3vq2_A 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272 (606)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCT
T ss_pred cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccc
Confidence 2222222222234444444444221
Q ss_pred ---CcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcc
Q 048831 558 ---KKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDT 634 (1051)
Q Consensus 558 ---~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~ 634 (1051)
+..|. +..+++|+.|+++++.+..+| .+..+++|+.|++++|.. ..+| .+ .+++|+.|++++|.....+ .
T Consensus 273 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~ 345 (606)
T 3vq2_A 273 DFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--K 345 (606)
T ss_dssp TCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--C
T ss_pred cccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--h
Confidence 11111 344455555555555555555 555555566666655554 4555 23 5555555555555433332 3
Q ss_pred cCCCCCccEEEccCCCCcCC---CcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccC--CCCCCCCC
Q 048831 635 LGQVESLEELDISGTATRRP---PSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALML--PSLSGLCS 709 (1051)
Q Consensus 635 l~~l~~L~~L~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~l~~l~~ 709 (1051)
+..+++|++|++++|.+... |..+..+++|+.|++++|..............+..+...++.....+ ..+.++++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 34455555555555554433 44444555555555555442211111111112223333333332222 23455555
Q ss_pred CCEEeccCCCCCCccccccccCCCcCcEEeccCCCcee--ccccccCCCCCCEEeccCCccccccCC---CCCCCceEee
Q 048831 710 LSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVT--LPASISGLFNLKYLELEDCKRLQSLPQ---LPPNVIKVSV 784 (1051)
Q Consensus 710 L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~c~~L~~lp~---lp~~L~~L~i 784 (1051)
|+.|++++|.+. ...|..++.+++|+.|++++|.+.. +|..+..+++|+.|++++|+.....|. -.++|+.|++
T Consensus 426 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 426 LLYLDISYTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp CCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECcCCCCC-ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 555555555543 2334445555555555555555543 454555555555555555543222222 1234555555
Q ss_pred cCC
Q 048831 785 NGC 787 (1051)
Q Consensus 785 ~~C 787 (1051)
.+|
T Consensus 505 s~N 507 (606)
T 3vq2_A 505 SHN 507 (606)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1e-27 Score=291.83 Aligned_cols=253 Identities=16% Similarity=0.184 Sum_probs=182.5
Q ss_pred CCCcc-ccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCccc-CccccCCCCCCEEecCCCCCCCccccc-
Q 048831 534 SSLPV-TISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEV-PSSIELLTGLELLNLNDCKNLVRLPNS- 610 (1051)
Q Consensus 534 ~~lp~-~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~- 610 (1051)
..++. .+..+++|++|++++|. +..+|..+..+++|++|++++|.+..+ |..+..+++|+.|++++|.....+|..
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred CccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 34433 36678888888888875 457787788888888888888888866 456788888888888888766566543
Q ss_pred ccCCCCCCEEeccCCCCCCcC--CcccCCCCCccEEEccCCCCcCC-CcccccccCCcEEEccCCCCCCCCCcc--cCCc
Q 048831 611 INGLKSLKTLNLSGCCKLENV--PDTLGQVESLEELDISGTATRRP-PSSIFLMKNLKTLSFSGCNGPPSTASC--HLNL 685 (1051)
Q Consensus 611 i~~L~~L~~L~L~~c~~l~~l--p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~ 685 (1051)
+..+++|++|++++|...... +..++.+++|++|++++|.+... |..+..+++|+.|++++|......+.. ....
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 778888888888887665443 66778888888888888876655 556777888888888887754432221 1223
Q ss_pred cccccccCCCCcccc-CCCCCCCCCCCEEeccCCCCCCcccc--ccccCCCcCcEEeccCCCceec-cccccCCCCCCEE
Q 048831 686 PFNLMRKSSCPVALM-LPSLSGLCSLSKLDLSDCGLREGAIL--SDICNLHSLKELYLSGNNFVTL-PASISGLFNLKYL 761 (1051)
Q Consensus 686 ~~~~l~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~--~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L 761 (1051)
.+..+...++..... +..+.++++|+.|++++|.+.+..++ ..+..+++|+.|++++|.++.+ |..+..+++|+.|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 345555666654433 45678899999999999988654333 5688899999999999999877 5678899999999
Q ss_pred eccCCccccccCCCC---CCCceEeecCCc
Q 048831 762 ELEDCKRLQSLPQLP---PNVIKVSVNGCA 788 (1051)
Q Consensus 762 ~l~~c~~L~~lp~lp---~~L~~L~i~~C~ 788 (1051)
++++|+.....|+.. ++| .|++.+|.
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred ECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 999997555444322 345 77777663
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=5.6e-28 Score=294.22 Aligned_cols=375 Identities=21% Similarity=0.214 Sum_probs=283.4
Q ss_pred ceeeechhhhcCCCCCcEEEecCcccC----CcccccCcCceEEEEcCCCCCCCCC-CC-CCCCeeEEEcCccCccc--c
Q 048831 385 NEVRLSAKAFSLMTNLRFLNIGNVQLP----EGLEYLSNKLRLLNWHRYPLKSLPS-NL-QLDKIVEFQMCYSHIEE--L 456 (1051)
Q Consensus 385 ~~~~~~~~~f~~~~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~--l 456 (1051)
....+.+.+|.++++|+.|++++|.+. ..+..+ .+|++|++++|.+..+|. .+ .+.+|++|++++|.+.. +
T Consensus 67 ~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~l 145 (606)
T 3vq2_A 67 EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC-TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCC
T ss_pred cccccCHHHhhchhhcCEeECCCCcccccChhhcCCc-ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceec
Confidence 344566778899999999999988753 334444 369999999999988883 44 78899999999998874 6
Q ss_pred cccccCCCCCCEEecCCCCCCCCCCC-C---------------------------CCCCccCEEEeeCCCCCh-hhhh--
Q 048831 457 WKGIKPLNTLKVMKLSHSENLIKTPN-F---------------------------IEVPNLEVLDLKGCTSLR-EIHS-- 505 (1051)
Q Consensus 457 ~~~~~~l~~L~~L~L~~~~~l~~~~~-~---------------------------~~l~~L~~L~L~~c~~l~-~l~~-- 505 (1051)
|..+..+++|++|++++|......+. + ....+|++|++++|.... .++.
T Consensus 146 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 225 (606)
T 3vq2_A 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL 225 (606)
T ss_dssp CGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHH
T ss_pred hHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHh
Confidence 88888999999999988864433221 1 122367777777764321 1111
Q ss_pred ------------------------------------------------------hhccCCCCcEEecCCCCCCCccCC--
Q 048831 506 ------------------------------------------------------SLLRHNKLILLNLKGCTSLTTLPD-- 529 (1051)
Q Consensus 506 ------------------------------------------------------si~~l~~L~~L~L~~c~~l~~l~~-- 529 (1051)
.+..+++|+.|+++++. +..+|.
T Consensus 226 ~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~l~ 304 (606)
T 3vq2_A 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVP 304 (606)
T ss_dssp HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCCCCC
T ss_pred ccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCcc-chhhhhcc
Confidence 13344556666655532 122221
Q ss_pred -----------CCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCccc---CccccCCCCCCE
Q 048831 530 -----------CKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEV---PSSIELLTGLEL 595 (1051)
Q Consensus 530 -----------~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~ 595 (1051)
...+..+| .+ .+++|++|++++|.....+ .+..+++|++|++++|.+..+ |..+..+++|+.
T Consensus 305 ~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 380 (606)
T 3vq2_A 305 KHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380 (606)
T ss_dssp TTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCE
T ss_pred ccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccE
Confidence 11234555 33 6788888888888665544 466889999999999999876 778899999999
Q ss_pred EecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCC-cccCCCCCccEEEccCCCCcC-CCcccccccCCcEEEccCCC
Q 048831 596 LNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDISGTATRR-PPSSIFLMKNLKTLSFSGCN 673 (1051)
Q Consensus 596 L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~ 673 (1051)
|++++|. +..+|..+..+++|+.|++++|......| ..+..+++|++|++++|.+.. .|..+..+++|++|++++|.
T Consensus 381 L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 381 LDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp EECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred eECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 9999987 55677889999999999999998777766 678999999999999999876 46778899999999999986
Q ss_pred CCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceec-cccc
Q 048831 674 GPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTL-PASI 752 (1051)
Q Consensus 674 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~ 752 (1051)
.... ..+..+.++++|+.|+|++|++. +..|..+..+++|+.|+|++|+++.+ |..+
T Consensus 460 l~~~---------------------~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 460 FKDN---------------------TLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp EGGG---------------------EECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred CCCc---------------------chHHhhccCCCCCEEECCCCcCC-ccChhhhcccccCCEEECCCCcCCCcCHHHc
Confidence 4321 12556888999999999999986 45677789999999999999999876 7788
Q ss_pred cCCCCCCEEeccCCccccccCC----CCCCCceEeecCCcc
Q 048831 753 SGLFNLKYLELEDCKRLQSLPQ----LPPNVIKVSVNGCAS 789 (1051)
Q Consensus 753 ~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~i~~C~~ 789 (1051)
..+++|+.|++++|+ +..+|. +|.+|+.|++.+++-
T Consensus 518 ~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred cCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCc
Confidence 999999999999997 667774 566799999888653
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3.2e-28 Score=300.08 Aligned_cols=331 Identities=16% Similarity=0.169 Sum_probs=268.9
Q ss_pred cCcccccccccCCCCCCEEecCCCCCCC------------------CCCCCC--CCCccCEEEeeCCCCChhhhhhhccC
Q 048831 451 SHIEELWKGIKPLNTLKVMKLSHSENLI------------------KTPNFI--EVPNLEVLDLKGCTSLREIHSSLLRH 510 (1051)
Q Consensus 451 ~~i~~l~~~~~~l~~L~~L~L~~~~~l~------------------~~~~~~--~l~~L~~L~L~~c~~l~~l~~si~~l 510 (1051)
|++..+|..+..+++|++|+|++|.... .++.++ ++++|++|+|++|.....+|..+..+
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5666799999999999999999998766 334566 99999999999999899999999999
Q ss_pred CCCcEEecCCCCCCCccCCCCCCCCCccccccC-------ceecEEeeeCCCCCCcCch--hhCCCCCCCEEEecCccCc
Q 048831 511 NKLILLNLKGCTSLTTLPDCKNLSSLPVTISSL-------KCLRTLKLSGCSKLKKFPA--IVASMEDLSELYLDGTYIT 581 (1051)
Q Consensus 511 ~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l-------~~L~~L~Ls~c~~~~~~p~--~~~~l~~L~~L~L~~~~i~ 581 (1051)
++|+.|+++++..+.. ..+|..++++ ++|++|+|++|... .+|. .++++++|+.|++++|.+.
T Consensus 515 ~~L~~L~Ls~N~~lsg-------~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 515 PELQSLNIACNRGISA-------AQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp SSCCEEECTTCTTSCH-------HHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred CCCCEEECcCCCCccc-------ccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 9999999998643321 0255555544 49999999998766 8998 9999999999999999999
Q ss_pred ccCccccCCCCCCEEecCCCCCCCcccccccCCCC-CCEEeccCCCCCCcCCcccCCCCC--ccEEEccCCCCcCCCcc-
Q 048831 582 EVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKS-LKTLNLSGCCKLENVPDTLGQVES--LEELDISGTATRRPPSS- 657 (1051)
Q Consensus 582 ~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~-L~~L~L~~c~~l~~lp~~l~~l~~--L~~L~l~~~~~~~~~~~- 657 (1051)
.+| .++.+++|+.|++++|... .+|..+..+++ |+.|+|++|... .+|..+..++. |+.|++++|.+...++.
T Consensus 587 ~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 999 8999999999999998865 89999999999 999999999755 88988877754 99999999998665433
Q ss_pred ---cc--cccCCcEEEccCCCCCCCCCccc--CCccccccccCCCCccccCCCCCC--------CCCCCEEeccCCCCCC
Q 048831 658 ---IF--LMKNLKTLSFSGCNGPPSTASCH--LNLPFNLMRKSSCPVALMLPSLSG--------LCSLSKLDLSDCGLRE 722 (1051)
Q Consensus 658 ---l~--~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~l~~--------l~~L~~L~L~~~~l~~ 722 (1051)
+. .+++|+.|++++|.... .+... ....+..+.+.++....+|..+.. +++|+.|+|++|++.
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~- 741 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT- 741 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-
T ss_pred hhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-
Confidence 33 45699999999998763 33221 123455666777766666665433 339999999999997
Q ss_pred cccccccc--CCCcCcEEeccCCCceeccccccCCCCCCEEeccC------CccccccCC---CCCCCceEeecCCcccc
Q 048831 723 GAILSDIC--NLHSLKELYLSGNNFVTLPASISGLFNLKYLELED------CKRLQSLPQ---LPPNVIKVSVNGCASLL 791 (1051)
Q Consensus 723 ~~~~~~l~--~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~------c~~L~~lp~---lp~~L~~L~i~~C~~L~ 791 (1051)
.+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|+|++ |...+.+|. -.++|+.|++.+|.- .
T Consensus 742 -~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~ 819 (876)
T 4ecn_A 742 -SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-R 819 (876)
T ss_dssp -CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred -cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-C
Confidence 4888887 99999999999999999999999999999999987 444566664 246899999999864 6
Q ss_pred ccccc
Q 048831 792 TLLGA 796 (1051)
Q Consensus 792 ~~~~~ 796 (1051)
.++..
T Consensus 820 ~Ip~~ 824 (876)
T 4ecn_A 820 KVDEK 824 (876)
T ss_dssp BCCSC
T ss_pred ccCHh
Confidence 55543
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=7.2e-28 Score=291.22 Aligned_cols=397 Identities=19% Similarity=0.205 Sum_probs=232.8
Q ss_pred ccceeeechhhhcCCCCCcEEEecCcccCC----cccccCcCceEEEEcCCCCCCCCC-CC-CCCCeeEEEcCccCcccc
Q 048831 383 LKNEVRLSAKAFSLMTNLRFLNIGNVQLPE----GLEYLSNKLRLLNWHRYPLKSLPS-NL-QLDKIVEFQMCYSHIEEL 456 (1051)
Q Consensus 383 ~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l 456 (1051)
......+...+|..+++|+.|+++++.+.. .+.. ..+|++|++++|.+..+|. .| .+.+|++|++++|.+..+
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 115 (570)
T 2z63_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115 (570)
T ss_dssp SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS
T ss_pred CCccCccChhHhhCCCCceEEECCCCcCCccCcccccC-chhCCEEeCcCCcCCccCHhhhcCccccccccccccccccC
Confidence 333444566788888899999998887532 2232 3478899998888888874 44 788889999988888887
Q ss_pred cc-cccCCCCCCEEecCCCCCCC-CCC-CCCCCCccCEEEeeCCCCChhhhhhhccCCCC----cEEecCCCCCCCccCC
Q 048831 457 WK-GIKPLNTLKVMKLSHSENLI-KTP-NFIEVPNLEVLDLKGCTSLREIHSSLLRHNKL----ILLNLKGCTSLTTLPD 529 (1051)
Q Consensus 457 ~~-~~~~l~~L~~L~L~~~~~l~-~~~-~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L----~~L~L~~c~~l~~l~~ 529 (1051)
+. .+..+++|++|++++|.... .+| .++++++|++|++++|......+..+..+.+| +.|+++++.--...+.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (570)
T ss_dssp TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHH
Confidence 76 47888889999998886554 334 48888889999888865443334556666666 6666665421111000
Q ss_pred CC------------------------------------------------------------------------CCCCCc
Q 048831 530 CK------------------------------------------------------------------------NLSSLP 537 (1051)
Q Consensus 530 ~~------------------------------------------------------------------------~l~~lp 537 (1051)
.. ....+|
T Consensus 196 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 275 (570)
T 2z63_A 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275 (570)
T ss_dssp TTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST
T ss_pred HhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch
Confidence 00 001122
Q ss_pred cccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCC
Q 048831 538 VTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSL 617 (1051)
Q Consensus 538 ~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L 617 (1051)
..+..+++|++|++++|.. ..+|..+..+ +|++|++++|.+..+|. ..+++|+.|++++|......+. ..+++|
T Consensus 276 ~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L 349 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSL 349 (570)
T ss_dssp TTTGGGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTC
T ss_pred hhhcCcCcccEEEecCccc-hhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc--ccCCCC
Confidence 3344455555566555532 3455555555 56666666665555554 3455555666555554433332 456666
Q ss_pred CEEeccCCCCCCcC--CcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCc--ccCCccccccccC
Q 048831 618 KTLNLSGCCKLENV--PDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTAS--CHLNLPFNLMRKS 693 (1051)
Q Consensus 618 ~~L~L~~c~~l~~l--p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~l~~~ 693 (1051)
++|++++|...... |..+..+++|++|++++|.+..++..+..+++|+.|++++|......+. ......+..+.+.
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 66666666543221 4455666677777777776666665566677777777776654332211 1111223334444
Q ss_pred CCCccc-cCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceec-cccccCCCCCCEEeccCCccccc
Q 048831 694 SCPVAL-MLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTL-PASISGLFNLKYLELEDCKRLQS 771 (1051)
Q Consensus 694 ~~~~~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~c~~L~~ 771 (1051)
++.... .+..+.++++|+.|++++|.+.++.+|..+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|+ +..
T Consensus 430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~ 508 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKS 508 (570)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSC
T ss_pred CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCC
Confidence 443322 2334556666666666666665445566666666666666666666655 5556666666666666664 333
Q ss_pred cCC-C---CCCCceEeecCC
Q 048831 772 LPQ-L---PPNVIKVSVNGC 787 (1051)
Q Consensus 772 lp~-l---p~~L~~L~i~~C 787 (1051)
+|. . .++|+.|++.++
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSS
T ss_pred CCHHHhhcccCCcEEEecCC
Confidence 331 1 134555555544
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=283.71 Aligned_cols=357 Identities=18% Similarity=0.156 Sum_probs=239.3
Q ss_pred CCCcEEEecCcccCCccc---ccCcCceEEEEcCCCCCCC-CCCC-CCCCeeEEEcCccCcccccccccCCCCCCEEecC
Q 048831 398 TNLRFLNIGNVQLPEGLE---YLSNKLRLLNWHRYPLKSL-PSNL-QLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLS 472 (1051)
Q Consensus 398 ~~Lr~L~l~~~~l~~~~~---~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~ 472 (1051)
++|+.|++++|.+..... .-..+|++|++++|.++.+ |..| .+.+|++|++++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 789999999998754321 1234799999999999988 4556 789999999999999999887 89999999999
Q ss_pred CCCCCC-CCC-CCCCCCccCEEEeeCCCCChhhhhhhccCCCC--cEEecCCCCC--CCccCCCC-CC------------
Q 048831 473 HSENLI-KTP-NFIEVPNLEVLDLKGCTSLREIHSSLLRHNKL--ILLNLKGCTS--LTTLPDCK-NL------------ 533 (1051)
Q Consensus 473 ~~~~l~-~~~-~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L--~~L~L~~c~~--l~~l~~~~-~l------------ 533 (1051)
+|.... ..| .++++++|++|++++|.-.. ..+..+.+| +.|++++|.. ....|... .+
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred CCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 998665 344 58899999999999875433 456677777 9999998754 23322211 10
Q ss_pred ---CCC-ccccccCceecEEeeeCCC-------CCCcCchhhCCCC---------------------------CCCEEEe
Q 048831 534 ---SSL-PVTISSLKCLRTLKLSGCS-------KLKKFPAIVASME---------------------------DLSELYL 575 (1051)
Q Consensus 534 ---~~l-p~~l~~l~~L~~L~Ls~c~-------~~~~~p~~~~~l~---------------------------~L~~L~L 575 (1051)
..+ +..+..+++|+.|++++|. ..+.+| .+..++ +|++|++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 011 1234557777777777764 111111 222232 5555566
Q ss_pred cCccCc-ccCccc-----cCCCCCCEEecCCCCCCCccc-ccc-------------------------cCCCCCCEEecc
Q 048831 576 DGTYIT-EVPSSI-----ELLTGLELLNLNDCKNLVRLP-NSI-------------------------NGLKSLKTLNLS 623 (1051)
Q Consensus 576 ~~~~i~-~lp~~i-----~~l~~L~~L~L~~~~~l~~lp-~~i-------------------------~~L~~L~~L~L~ 623 (1051)
++|.+. .+|..+ +.+++|+.+++++|.. .+| ..+ ..+++|++|+++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 666555 556555 5555555555555443 223 111 455666666666
Q ss_pred CCCCCCcCCcccCCCCCccEEEccCCCCcCC---CcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCcccc
Q 048831 624 GCCKLENVPDTLGQVESLEELDISGTATRRP---PSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALM 700 (1051)
Q Consensus 624 ~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 700 (1051)
+|.....+|..++.+++|++|++++|.+..+ |..+..+++|+.|++++|..... +
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~----------------------l 390 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD----------------------E 390 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC----------------------G
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc----------------------c
Confidence 6665555666666666666666666665532 34455666666666666654321 2
Q ss_pred CC-CCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCccccccCCC----
Q 048831 701 LP-SLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQSLPQL---- 775 (1051)
Q Consensus 701 ~~-~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~~lp~l---- 775 (1051)
+. .+..+++|+.|++++|.+.. ..|..+. ++|+.|+|++|.++.+|..+..+++|+.|++++|+ ++.+|..
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 466 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTD-TIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDR 466 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCG-GGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred ccchhccCccCCEEECcCCCCCc-chhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCHHHhcc
Confidence 32 36778899999999999863 4444443 79999999999999999988899999999999986 6677752
Q ss_pred CCCCceEeecCCc
Q 048831 776 PPNVIKVSVNGCA 788 (1051)
Q Consensus 776 p~~L~~L~i~~C~ 788 (1051)
.++|+.|++.+++
T Consensus 467 l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 467 LTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEECcCCC
Confidence 2467777766654
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=298.85 Aligned_cols=397 Identities=19% Similarity=0.215 Sum_probs=236.3
Q ss_pred ceeeechhhhcCCCCCcEEEecCccc-----CCcccccCcCceEEEEcCCCCCCC-CCCC-CCCCeeEEEcCccCccc-c
Q 048831 385 NEVRLSAKAFSLMTNLRFLNIGNVQL-----PEGLEYLSNKLRLLNWHRYPLKSL-PSNL-QLDKIVEFQMCYSHIEE-L 456 (1051)
Q Consensus 385 ~~~~~~~~~f~~~~~Lr~L~l~~~~l-----~~~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~l~~~~i~~-l 456 (1051)
....+.+..|..+++|++|+++++.. +..+..+ .+|++|++++|.+..+ |..| .+.+|++|++++|.+.. +
T Consensus 35 ~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 113 (844)
T 3j0a_A 35 YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113 (844)
T ss_dssp CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC-TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCC-CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence 33445667889999999999988843 2334443 3699999999998877 5566 78899999999998875 4
Q ss_pred ccc--ccCCCCCCEEecCCCCCCCCCC--CCCCCCccCEEEeeCCCCChhhhhhhccC--CC------------------
Q 048831 457 WKG--IKPLNTLKVMKLSHSENLIKTP--NFIEVPNLEVLDLKGCTSLREIHSSLLRH--NK------------------ 512 (1051)
Q Consensus 457 ~~~--~~~l~~L~~L~L~~~~~l~~~~--~~~~l~~L~~L~L~~c~~l~~l~~si~~l--~~------------------ 512 (1051)
+.. +..+++|++|++++|......+ .|+++++|++|+|++|......+..+..+ ++
T Consensus 114 ~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~ 193 (844)
T 3j0a_A 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193 (844)
T ss_dssp STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC
T ss_pred ccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc
Confidence 444 7889999999999987665543 48889999999999875433333333333 33
Q ss_pred ------------CcEEecCCCCCCCccCCC-------C-------------------CCCCC-cccccc--CceecEEee
Q 048831 513 ------------LILLNLKGCTSLTTLPDC-------K-------------------NLSSL-PVTISS--LKCLRTLKL 551 (1051)
Q Consensus 513 ------------L~~L~L~~c~~l~~l~~~-------~-------------------~l~~l-p~~l~~--l~~L~~L~L 551 (1051)
|+.|+++++.--...+.. . ++... +..+.. .++|++|++
T Consensus 194 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~L 273 (844)
T 3j0a_A 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273 (844)
T ss_dssp CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEEC
T ss_pred hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEEC
Confidence 455555444211110000 0 00000 001111 256777777
Q ss_pred eCCCCCCcCchhhCCCCCCCEEEecCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCc
Q 048831 552 SGCSKLKKFPAIVASMEDLSELYLDGTYITEV-PSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLEN 630 (1051)
Q Consensus 552 s~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~ 630 (1051)
++|......|..+..+++|+.|++++|.+..+ |..+..+++|++|++++|......|..+..+++|+.|++++|.....
T Consensus 274 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 353 (844)
T 3j0a_A 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353 (844)
T ss_dssp TTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred CCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence 77766666666677777777777777777765 34567777777777777766555566777777777777777755444
Q ss_pred CCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcc----------------------cCCcccc
Q 048831 631 VPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASC----------------------HLNLPFN 688 (1051)
Q Consensus 631 lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------------------~~~~~~~ 688 (1051)
.+..+..+++|+.|++++|.+..++. +++|+.|++++|+........ .....+.
T Consensus 354 ~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~ 429 (844)
T 3j0a_A 354 QDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ 429 (844)
T ss_dssp CSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCC
T ss_pred ChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccc
Confidence 44556777777777777776655432 444444444444332110000 0001122
Q ss_pred ccccCCCCccccCC--CCCCCCCCCEEeccCCCCCC----ccccccccCCCcCcEEeccCCCceeccc-cccCCCCCCEE
Q 048831 689 LMRKSSCPVALMLP--SLSGLCSLSKLDLSDCGLRE----GAILSDICNLHSLKELYLSGNNFVTLPA-SISGLFNLKYL 761 (1051)
Q Consensus 689 ~l~~~~~~~~~~~~--~l~~l~~L~~L~L~~~~l~~----~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L 761 (1051)
.+.+.++.....+. .+..+++|+.|+|++|.+.. +..+..+..+++|+.|+|++|+++.+|. .+..+++|+.|
T Consensus 430 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 509 (844)
T 3j0a_A 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509 (844)
T ss_dssp EEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE
T ss_pred eeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhee
Confidence 23333333222221 23445666666776666531 1223345566666666666666665544 34666666666
Q ss_pred eccCCccccccCC--CCCCCceEeecCC
Q 048831 762 ELEDCKRLQSLPQ--LPPNVIKVSVNGC 787 (1051)
Q Consensus 762 ~l~~c~~L~~lp~--lp~~L~~L~i~~C 787 (1051)
+|++|. +..+|. ++++|+.|++.++
T Consensus 510 ~Ls~N~-l~~l~~~~~~~~L~~L~Ls~N 536 (844)
T 3j0a_A 510 SLNSNR-LTVLSHNDLPANLEILDISRN 536 (844)
T ss_dssp EEESCC-CSSCCCCCCCSCCCEEEEEEE
T ss_pred ECCCCC-CCccChhhhhccccEEECCCC
Confidence 666664 444543 4456666666554
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.6e-27 Score=286.57 Aligned_cols=368 Identities=21% Similarity=0.250 Sum_probs=229.8
Q ss_pred eeechhhhcCCCCCcEEEecCcccCC----cccccCcCceEEEEcCCCCCCCCCC-C-CCCCeeEEEcCccCcccc--cc
Q 048831 387 VRLSAKAFSLMTNLRFLNIGNVQLPE----GLEYLSNKLRLLNWHRYPLKSLPSN-L-QLDKIVEFQMCYSHIEEL--WK 458 (1051)
Q Consensus 387 ~~~~~~~f~~~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l--~~ 458 (1051)
..+.+.+|..+++|++|++++|.+.. .+..+ .+|++|++++|.+..+|.. + .+.+|++|++++|.+..+ +.
T Consensus 39 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 117 (549)
T 2z81_A 39 TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117 (549)
T ss_dssp CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC
T ss_pred CccChhhhhcCCcccEEECCCCCcCccChhhcccc-ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh
Confidence 34456678888888888888887532 33333 3688888888888888875 4 788888888888888754 56
Q ss_pred cccCCCCCCEEecCCCCCCCCCC--CCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCC-------------C
Q 048831 459 GIKPLNTLKVMKLSHSENLIKTP--NFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCT-------------S 523 (1051)
Q Consensus 459 ~~~~l~~L~~L~L~~~~~l~~~~--~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~-------------~ 523 (1051)
.+..+++|++|++++|.....+| .+.++++|++|++++|......|..+..+++|+.|+++++. +
T Consensus 118 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 197 (549)
T 2z81_A 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197 (549)
T ss_dssp SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTT
T ss_pred hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhccc
Confidence 68888888888888887555554 47888888888888876555566666665555555554322 1
Q ss_pred CCccCC-CCCCCC--------------------------------CccccccCceecEEeeeCCCCCC--c---------
Q 048831 524 LTTLPD-CKNLSS--------------------------------LPVTISSLKCLRTLKLSGCSKLK--K--------- 559 (1051)
Q Consensus 524 l~~l~~-~~~l~~--------------------------------lp~~l~~l~~L~~L~Ls~c~~~~--~--------- 559 (1051)
++.+.- ...+.. ++..+..+++|+.|++++|...+ .
T Consensus 198 L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 277 (549)
T 2z81_A 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277 (549)
T ss_dssp BSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCC
T ss_pred ccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhh
Confidence 110000 000000 01111223333344443332111 0
Q ss_pred ------------------------CchhhCCCCCCCEEEecCccCcccCccc-cCCCCCCEEecCCCCCCCccc---ccc
Q 048831 560 ------------------------FPAIVASMEDLSELYLDGTYITEVPSSI-ELLTGLELLNLNDCKNLVRLP---NSI 611 (1051)
Q Consensus 560 ------------------------~p~~~~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L~~~~~l~~lp---~~i 611 (1051)
++.....+.+|++|++++|.+..+|..+ ..+++|+.|++++|...+.+| ..+
T Consensus 278 ~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 357 (549)
T 2z81_A 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357 (549)
T ss_dssp CCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT
T ss_pred hhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhh
Confidence 0001112235666666666666666554 456677777777666555443 225
Q ss_pred cCCCCCCEEeccCCCCCCcCC---cccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCcccc
Q 048831 612 NGLKSLKTLNLSGCCKLENVP---DTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFN 688 (1051)
Q Consensus 612 ~~L~~L~~L~L~~c~~l~~lp---~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 688 (1051)
+.+++|++|++++|.... ++ ..+..+++|++|++++|.+..+|..+..+++|+.|++++|....
T Consensus 358 ~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~------------ 424 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV------------ 424 (549)
T ss_dssp TSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC------------
T ss_pred hccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc------------
Confidence 566677777777664432 22 33566667777777777766666666666777777776665322
Q ss_pred ccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCcc
Q 048831 689 LMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKR 768 (1051)
Q Consensus 689 ~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~ 768 (1051)
++..+ .++|+.|+|++|++.. + ...+++|++|+|++|+++.+|. ...+++|+.|++++|+
T Consensus 425 -----------l~~~~--~~~L~~L~Ls~N~l~~--~---~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~- 484 (549)
T 2z81_A 425 -----------VKTCI--PQTLEVLDVSNNNLDS--F---SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQ- 484 (549)
T ss_dssp -----------CCTTS--CTTCSEEECCSSCCSC--C---CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSC-
T ss_pred -----------ccchh--cCCceEEECCCCChhh--h---cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCc-
Confidence 12222 2578999999998864 2 2578899999999999998886 4678899999999986
Q ss_pred ccccCC----CCCCCceEeecCCc
Q 048831 769 LQSLPQ----LPPNVIKVSVNGCA 788 (1051)
Q Consensus 769 L~~lp~----lp~~L~~L~i~~C~ 788 (1051)
+..+|. -.++|+.|++.+++
T Consensus 485 l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 485 LKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCCcCHHHHhcCcccCEEEecCCC
Confidence 444432 23577888887776
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=8.5e-26 Score=278.83 Aligned_cols=398 Identities=21% Similarity=0.182 Sum_probs=241.9
Q ss_pred eeeechhhhcCCCCCcEEEecCcccCCc----ccccCcCceEEEEcCCCCCCCCCC-C-CCCCeeEEEcCccCccccc-c
Q 048831 386 EVRLSAKAFSLMTNLRFLNIGNVQLPEG----LEYLSNKLRLLNWHRYPLKSLPSN-L-QLDKIVEFQMCYSHIEELW-K 458 (1051)
Q Consensus 386 ~~~~~~~~f~~~~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l~-~ 458 (1051)
...+...+|.++++|+.|+++++.+... +..+ .+|++|++++|.+..+|.. | .+.+|++|++++|.+..++ .
T Consensus 37 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 115 (680)
T 1ziw_A 37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115 (680)
T ss_dssp CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSC
T ss_pred CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChh
Confidence 3445667899999999999999876432 3333 4799999999999999984 5 7999999999999998887 4
Q ss_pred cccCCCCCCEEecCCCCCCCCCCC-CCCCCccCEEEeeCCCCChhhhhhh--ccCCCCcEEecCCCCCCCccCCC-----
Q 048831 459 GIKPLNTLKVMKLSHSENLIKTPN-FIEVPNLEVLDLKGCTSLREIHSSL--LRHNKLILLNLKGCTSLTTLPDC----- 530 (1051)
Q Consensus 459 ~~~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~L~~c~~l~~l~~si--~~l~~L~~L~L~~c~~l~~l~~~----- 530 (1051)
.+..+++|++|++++|......+. +.++++|++|++++|......+..+ ..+++|+.|+++++. +..++..
T Consensus 116 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l 194 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAI 194 (680)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGS
T ss_pred HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhhh
Confidence 588999999999999976655554 7889999999999865333233333 345778888887763 2221110
Q ss_pred -------------------------------------CCCCC-CccccccCce--ecEEeeeCCCCCCcCchhhCCCCCC
Q 048831 531 -------------------------------------KNLSS-LPVTISSLKC--LRTLKLSGCSKLKKFPAIVASMEDL 570 (1051)
Q Consensus 531 -------------------------------------~~l~~-lp~~l~~l~~--L~~L~Ls~c~~~~~~p~~~~~l~~L 570 (1051)
..+.. .|..+..++. |++|++++|......|..++.+++|
T Consensus 195 ~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (680)
T 1ziw_A 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274 (680)
T ss_dssp SEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccc
Confidence 00111 1233444443 7777777776655556667777777
Q ss_pred CEEEecCccCccc-CccccCCCCCCEEecCC---------------------------------CCCCCcccccccCCCC
Q 048831 571 SELYLDGTYITEV-PSSIELLTGLELLNLND---------------------------------CKNLVRLPNSINGLKS 616 (1051)
Q Consensus 571 ~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~---------------------------------~~~l~~lp~~i~~L~~ 616 (1051)
++|++++|.+..+ |..+..+++|+.|++++ |......|..+.++++
T Consensus 275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 354 (680)
T 1ziw_A 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354 (680)
T ss_dssp CEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTT
T ss_pred cEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccC
Confidence 7777777766644 33445555555555544 3333333333444444
Q ss_pred CCEEeccCCC----------------------------CCCcCCcccCCCCCccEEEccCCCCcC-CC-cccccccCCcE
Q 048831 617 LKTLNLSGCC----------------------------KLENVPDTLGQVESLEELDISGTATRR-PP-SSIFLMKNLKT 666 (1051)
Q Consensus 617 L~~L~L~~c~----------------------------~l~~lp~~l~~l~~L~~L~l~~~~~~~-~~-~~l~~l~~L~~ 666 (1051)
|++|++++|. .....|..+..+++|+.|++++|.+.. +| ..+..+++|++
T Consensus 355 L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~ 434 (680)
T 1ziw_A 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434 (680)
T ss_dssp CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCE
T ss_pred CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccE
Confidence 4444444332 111122333444444444444444432 22 23444444444
Q ss_pred EEccCCCCCCCCCcc-cCCccccccccCCCCc---cccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccC
Q 048831 667 LSFSGCNGPPSTASC-HLNLPFNLMRKSSCPV---ALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSG 742 (1051)
Q Consensus 667 L~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~~---~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~ 742 (1051)
|++++|......+.. .....+..+....+.. ...|..+.++++|+.|++++|++.. ..+..+..+++|+.|++++
T Consensus 435 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~ 513 (680)
T 1ziw_A 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQH 513 (680)
T ss_dssp EECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred EecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCC
Confidence 544444421111000 0011222233333322 3446677888888899998888863 3445577888888888888
Q ss_pred CCceeccc---------cccCCCCCCEEeccCCccccccCC--C--CCCCceEeecCC
Q 048831 743 NNFVTLPA---------SISGLFNLKYLELEDCKRLQSLPQ--L--PPNVIKVSVNGC 787 (1051)
Q Consensus 743 n~l~~lp~---------~~~~l~~L~~L~l~~c~~L~~lp~--l--p~~L~~L~i~~C 787 (1051)
|.++.++. .+..+++|+.|++++|. +..+|. + .++|+.|++.++
T Consensus 514 N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccCcceeECCCC
Confidence 88876532 25778888888888875 556664 2 257788887654
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=290.74 Aligned_cols=391 Identities=18% Similarity=0.140 Sum_probs=288.2
Q ss_pred CCCCCcEEEecCcccC----CcccccCcCceEEEEcCC-CCCCC-CCCC-CCCCeeEEEcCccCcccc-cccccCCCCCC
Q 048831 396 LMTNLRFLNIGNVQLP----EGLEYLSNKLRLLNWHRY-PLKSL-PSNL-QLDKIVEFQMCYSHIEEL-WKGIKPLNTLK 467 (1051)
Q Consensus 396 ~~~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~-~l~~l-p~~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~ 467 (1051)
..++|+.|++++|.+. ..+..+ .+|++|++++| ....+ |..| .+.+|++|++++|.+..+ |..+..+++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 4578999999999864 334333 47999999999 45566 5556 899999999999999987 77899999999
Q ss_pred EEecCCCCCCCCCCC---CCCCCccCEEEeeCCCCChhh-hhhhccCCCCcEEecCCCCCCCccCC---------C----
Q 048831 468 VMKLSHSENLIKTPN---FIEVPNLEVLDLKGCTSLREI-HSSLLRHNKLILLNLKGCTSLTTLPD---------C---- 530 (1051)
Q Consensus 468 ~L~L~~~~~l~~~~~---~~~l~~L~~L~L~~c~~l~~l-~~si~~l~~L~~L~L~~c~~l~~l~~---------~---- 530 (1051)
+|+|++|......+. +.++++|++|+|++|...... +..++.+++|+.|+++++.--...+. .
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 999999987654443 899999999999997654433 35789999999999998642211110 0
Q ss_pred ---CCC-CCCccccccCce------ecEEeeeCCCCCCcCchhhC-----------------------------------
Q 048831 531 ---KNL-SSLPVTISSLKC------LRTLKLSGCSKLKKFPAIVA----------------------------------- 565 (1051)
Q Consensus 531 ---~~l-~~lp~~l~~l~~------L~~L~Ls~c~~~~~~p~~~~----------------------------------- 565 (1051)
..+ ...|..++.+.+ |++|++++|......+..+.
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 011 123444444444 99999999865444332221
Q ss_pred -C--CCCCCEEEecCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCc
Q 048831 566 -S--MEDLSELYLDGTYITEV-PSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESL 641 (1051)
Q Consensus 566 -~--l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L 641 (1051)
. ..+|+.|++++|.+..+ |..+..+++|+.|+|++|......|..+.++++|++|++++|......|..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 1 26899999999999876 5568999999999999998877778889999999999999998777778899999999
Q ss_pred cEEEccCCCCcCCCc-ccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCC------------------
Q 048831 642 EELDISGTATRRPPS-SIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLP------------------ 702 (1051)
Q Consensus 642 ~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------ 702 (1051)
+.|++++|.+..++. .+..+++|+.|++++|........ ..+..+...++....++.
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~----~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI----PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSC----CSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCC----CCcchhccCCCCcccccccccccceeecccCccccC
Confidence 999999999988865 578899999999999986543211 111222222222222211
Q ss_pred ----CCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceec------cccccCCCCCCEEeccCCcccccc
Q 048831 703 ----SLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTL------PASISGLFNLKYLELEDCKRLQSL 772 (1051)
Q Consensus 703 ----~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l------p~~~~~l~~L~~L~l~~c~~L~~l 772 (1051)
.+.++++|+.|+|++|++........+..+++|+.|+|++|.++.+ |..+.++++|+.|+|++|. +..+
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 495 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSL 495 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTC
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc-cccc
Confidence 2347888999999999886432233455678999999999988643 3457889999999999996 5555
Q ss_pred CC----CCCCCceEeecCCcccccc
Q 048831 773 PQ----LPPNVIKVSVNGCASLLTL 793 (1051)
Q Consensus 773 p~----lp~~L~~L~i~~C~~L~~~ 793 (1051)
|. -.++|+.|++.++ .+..+
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N-~l~~l 519 (844)
T 3j0a_A 496 PPGVFSHLTALRGLSLNSN-RLTVL 519 (844)
T ss_dssp CTTSSSSCCSCSEEEEESC-CCSSC
T ss_pred ChhHccchhhhheeECCCC-CCCcc
Confidence 53 2378999999987 44443
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=4.5e-27 Score=275.62 Aligned_cols=338 Identities=19% Similarity=0.194 Sum_probs=192.8
Q ss_pred cCcCceEEEEcCCCCCCC-CCCC-CCCCeeEEEcCccCcc-cc-cccccCCCCCCEEecCCCCCCCCCC-CCCCCCccCE
Q 048831 417 LSNKLRLLNWHRYPLKSL-PSNL-QLDKIVEFQMCYSHIE-EL-WKGIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEV 491 (1051)
Q Consensus 417 l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~l~~~~i~-~l-~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~ 491 (1051)
++.++++|+++++.++.+ |..+ .+.+|++|++++|.+. .+ +..+..+++|++|++++|......| .|.++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 445667777777766665 3334 5667777777776664 33 3346667777777777766554434 3666777777
Q ss_pred EEeeCCCCChhhhhh--hccCCCCcEEecCCCCCCCccCCCCCCCCC-ccc-cccCceecEEeeeCCCCCCcCchhhCCC
Q 048831 492 LDLKGCTSLREIHSS--LLRHNKLILLNLKGCTSLTTLPDCKNLSSL-PVT-ISSLKCLRTLKLSGCSKLKKFPAIVASM 567 (1051)
Q Consensus 492 L~L~~c~~l~~l~~s--i~~l~~L~~L~L~~c~~l~~l~~~~~l~~l-p~~-l~~l~~L~~L~Ls~c~~~~~~p~~~~~l 567 (1051)
|+|++|.....++.. +..+++|+.|+++++. +..+ |.. +..+++|++|++++|......|..+..+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~----------l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN----------IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB----------CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCc----------cCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 777766544444443 6666777777776642 2222 222 5566677777777766555555555544
Q ss_pred --CCCCEEEecCccCcccCcc---------ccCCCCCCEEecCCCCCCCcccccccC---CCCCCEEeccCCCCCCcCC-
Q 048831 568 --EDLSELYLDGTYITEVPSS---------IELLTGLELLNLNDCKNLVRLPNSING---LKSLKTLNLSGCCKLENVP- 632 (1051)
Q Consensus 568 --~~L~~L~L~~~~i~~lp~~---------i~~l~~L~~L~L~~~~~l~~lp~~i~~---L~~L~~L~L~~c~~l~~lp- 632 (1051)
.+|+.|+++++.+..++.. +..+++|+.|++++|......|..+.. .++|+.|++++|.......
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence 4666667776666655432 234566777777776655555544432 2566666666654332110
Q ss_pred ---------cccC--CCCCccEEEccCCCCcCC-CcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCcccc
Q 048831 633 ---------DTLG--QVESLEELDISGTATRRP-PSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALM 700 (1051)
Q Consensus 633 ---------~~l~--~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 700 (1051)
..+. ..++|+.|++++|.+... |..+..+++|+.|++++|..... .
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------~ 315 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI----------------------D 315 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE----------------------C
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc----------------------C
Confidence 0111 124666666666665543 44566666666666666653321 1
Q ss_pred CCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceec-cccccCCCCCCEEeccCCccccccCC----C
Q 048831 701 LPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTL-PASISGLFNLKYLELEDCKRLQSLPQ----L 775 (1051)
Q Consensus 701 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~c~~L~~lp~----l 775 (1051)
+..+.++++|+.|+|++|.+. ...+..+..+++|++|+|++|.++.+ |..+..+++|+.|++++|+ ++.+|. -
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 393 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDR 393 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred hhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhcc
Confidence 234556666666666666663 23345566666666666666666655 4456666666666666654 444442 1
Q ss_pred CCCCceEeecCCc
Q 048831 776 PPNVIKVSVNGCA 788 (1051)
Q Consensus 776 p~~L~~L~i~~C~ 788 (1051)
.++|+.|++.+++
T Consensus 394 l~~L~~L~l~~N~ 406 (455)
T 3v47_A 394 LTSLQKIWLHTNP 406 (455)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEEccCCC
Confidence 2455556555543
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.3e-27 Score=279.89 Aligned_cols=352 Identities=18% Similarity=0.213 Sum_probs=264.0
Q ss_pred cceeeechhhhcCCCCCcEEEecCcccCCc----ccccCcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCccc--cc
Q 048831 384 KNEVRLSAKAFSLMTNLRFLNIGNVQLPEG----LEYLSNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEE--LW 457 (1051)
Q Consensus 384 ~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~--l~ 457 (1051)
.....+.+.+|..+++|+.|++++|.+... +..+ .+|++|++++|.++.+|.. .+.+|++|++++|.+.. +|
T Consensus 31 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p 108 (520)
T 2z7x_B 31 NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPIC 108 (520)
T ss_dssp SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC-TTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCC
T ss_pred CcccccChhhccccccccEEecCCCccCCcChHHhhcc-cCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccch
Confidence 333445678899999999999999986533 3333 4799999999999999988 89999999999999986 46
Q ss_pred ccccCCCCCCEEecCCCCCCCCCCCCCCCCcc--CEEEeeCCCC--Chhhhhhhcc------------------------
Q 048831 458 KGIKPLNTLKVMKLSHSENLIKTPNFIEVPNL--EVLDLKGCTS--LREIHSSLLR------------------------ 509 (1051)
Q Consensus 458 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L--~~L~L~~c~~--l~~l~~si~~------------------------ 509 (1051)
..+..+++|++|++++|.... ..+..+++| ++|++++|.. ....|..+..
T Consensus 109 ~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~ 186 (520)
T 2z7x_B 109 KEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186 (520)
T ss_dssp GGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCC
T ss_pred hhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhh
Confidence 789999999999999886433 345566666 7777777654 2333333332
Q ss_pred --CCCCcEEecCCCC----------------------------------------------CCCccCCC-CCCC-CCccc
Q 048831 510 --HNKLILLNLKGCT----------------------------------------------SLTTLPDC-KNLS-SLPVT 539 (1051)
Q Consensus 510 --l~~L~~L~L~~c~----------------------------------------------~l~~l~~~-~~l~-~lp~~ 539 (1051)
+++|+.|++++|. .++.+.-. ..+. .+|..
T Consensus 187 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 266 (520)
T 2z7x_B 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266 (520)
T ss_dssp TTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC
T ss_pred hcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccc
Confidence 3333344333321 12111100 0111 45555
Q ss_pred c-----ccCceecEEeeeCCCCCCcCc-hhhCCC---CCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCccccc
Q 048831 540 I-----SSLKCLRTLKLSGCSKLKKFP-AIVASM---EDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNS 610 (1051)
Q Consensus 540 l-----~~l~~L~~L~Ls~c~~~~~~p-~~~~~l---~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 610 (1051)
+ +++++|+.+++++|.. .+| ..+..+ .+|+.|++++|.+..++. ...+++|++|++++|.....+|..
T Consensus 267 ~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~ 343 (520)
T 2z7x_B 267 DFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFEN 343 (520)
T ss_dssp CCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhh
Confidence 5 6677777777777655 455 333333 568888888887765542 268899999999999988888999
Q ss_pred ccCCCCCCEEeccCCCCCC--cCCcccCCCCCccEEEccCCCCcC-CCcc-cccccCCcEEEccCCCCCCCCCcccCCcc
Q 048831 611 INGLKSLKTLNLSGCCKLE--NVPDTLGQVESLEELDISGTATRR-PPSS-IFLMKNLKTLSFSGCNGPPSTASCHLNLP 686 (1051)
Q Consensus 611 i~~L~~L~~L~L~~c~~l~--~lp~~l~~l~~L~~L~l~~~~~~~-~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 686 (1051)
+..+++|+.|++++|.... .+|..++.+++|++|++++|.+.. +|.. +..+++|+.|++++|......
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-------- 415 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-------- 415 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG--------
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch--------
Confidence 9999999999999998765 567789999999999999999987 7764 778899999999999754321
Q ss_pred ccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceecccc-ccCCCCCCEEeccC
Q 048831 687 FNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPAS-ISGLFNLKYLELED 765 (1051)
Q Consensus 687 ~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~ 765 (1051)
+..+. ++|+.|++++|++. .+|..+..+++|+.|+|++|+++.+|.. +..+++|+.|++++
T Consensus 416 --------------~~~l~--~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 416 --------------FRCLP--PRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp --------------GGSCC--TTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred --------------hhhhc--ccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 22222 68999999999997 5888888999999999999999999987 88999999999999
Q ss_pred Ccc
Q 048831 766 CKR 768 (1051)
Q Consensus 766 c~~ 768 (1051)
|+.
T Consensus 478 N~~ 480 (520)
T 2z7x_B 478 NPW 480 (520)
T ss_dssp SCB
T ss_pred CCC
Confidence 984
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.3e-26 Score=259.12 Aligned_cols=300 Identities=18% Similarity=0.235 Sum_probs=218.0
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCC
Q 048831 420 KLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTS 499 (1051)
Q Consensus 420 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~ 499 (1051)
+|+.|++.++.+..+|....+++|++|++++|.+..++. +..+++|++|++++|. +..++.+.++++|++|++++|.
T Consensus 45 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~~n~- 121 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDN- 121 (347)
T ss_dssp TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECTTSC-
T ss_pred cccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECcCCc-
Confidence 345555555555666553366777777777777777665 6777777777777774 3345567777777777777754
Q ss_pred ChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCcc
Q 048831 500 LREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTY 579 (1051)
Q Consensus 500 l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~ 579 (1051)
+..++. +..+++|+.|++++|..+..++ .+..+++|++|++++|.... ++. +..+++|++|++++|.
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~----------~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLS----------PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCG----------GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSC
T ss_pred ccCchh-hccCCceeEEECCCCCCccccc----------chhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCc
Confidence 444544 6777778888887765544332 25567888888888876443 333 6778888888888888
Q ss_pred CcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccc
Q 048831 580 ITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIF 659 (1051)
Q Consensus 580 i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~ 659 (1051)
+..++. +..+++|+.|++++|......+ +..+++|++|++++|.... ++. +..+++|++|++++|.+..+ ..+.
T Consensus 189 l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~~~ 262 (347)
T 4fmz_A 189 IEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDI-NAVK 262 (347)
T ss_dssp CCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GGGT
T ss_pred cccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCC-hhHh
Confidence 887766 7788888888888876543333 7778888888888876543 443 77888889999988888776 4577
Q ss_pred cccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEe
Q 048831 660 LMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELY 739 (1051)
Q Consensus 660 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~ 739 (1051)
.+++|+.|++++|..... +.+..+++|+.|++++|.+. ...+..++.+++|+.|+
T Consensus 263 ~l~~L~~L~l~~n~l~~~------------------------~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDI------------------------SVLNNLSQLNSLFLNNNQLG-NEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp TCTTCCEEECCSSCCCCC------------------------GGGGGCTTCSEEECCSSCCC-GGGHHHHHTCTTCSEEE
T ss_pred cCCCcCEEEccCCccCCC------------------------hhhcCCCCCCEEECcCCcCC-CcChhHhhccccCCEEE
Confidence 888899999888864331 23567888999999999886 34567788899999999
Q ss_pred ccCCCceeccccccCCCCCCEEeccCCc
Q 048831 740 LSGNNFVTLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 740 L~~n~l~~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
+++|.++.++. +..+++|+.|++++|+
T Consensus 318 L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 318 LSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred ccCCccccccC-hhhhhccceeehhhhc
Confidence 99999988876 8889999999999886
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=3e-26 Score=276.92 Aligned_cols=381 Identities=19% Similarity=0.175 Sum_probs=290.7
Q ss_pred CCCcEEEecCcccCC----cccccCcCceEEEEcCCCCCCCCCC-C-CCCCeeEEEcCccCccccc-ccccCCCCCCEEe
Q 048831 398 TNLRFLNIGNVQLPE----GLEYLSNKLRLLNWHRYPLKSLPSN-L-QLDKIVEFQMCYSHIEELW-KGIKPLNTLKVMK 470 (1051)
Q Consensus 398 ~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~ 470 (1051)
++++.|+++++.+.. .+.. ..+|++|++++|.+..++.. | .+.+|++|++++|.+..++ ..+..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTT-CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhC-CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 579999999998643 2333 34799999999999998764 4 7999999999999999887 5689999999999
Q ss_pred cCCCCCCCCCC-CCCCCCccCEEEeeCCCCCh-hhhhhhccCCCCcEEecCCCCCCCccCC-------------------
Q 048831 471 LSHSENLIKTP-NFIEVPNLEVLDLKGCTSLR-EIHSSLLRHNKLILLNLKGCTSLTTLPD------------------- 529 (1051)
Q Consensus 471 L~~~~~l~~~~-~~~~l~~L~~L~L~~c~~l~-~l~~si~~l~~L~~L~L~~c~~l~~l~~------------------- 529 (1051)
+++|......+ .++++++|++|++++|.... .+|..+..+++|+.|+++++.- ..++.
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccC
Confidence 99996544433 48999999999999976443 4789999999999999998742 22110
Q ss_pred CCCCCCCccccccCceecEEeeeCCCC-----------------------------------------------------
Q 048831 530 CKNLSSLPVTISSLKCLRTLKLSGCSK----------------------------------------------------- 556 (1051)
Q Consensus 530 ~~~l~~lp~~l~~l~~L~~L~Ls~c~~----------------------------------------------------- 556 (1051)
...+..++.......+|++|++++|..
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 112233333333333788888877521
Q ss_pred -----CCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcC
Q 048831 557 -----LKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENV 631 (1051)
Q Consensus 557 -----~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~l 631 (1051)
....|..+..+++|++|+++++.+..+|..+..+ +|+.|++++|... .+|. ..+++|+.|++++|.....+
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence 1224455677889999999999999999998888 9999999998754 6665 57899999999998876665
Q ss_pred CcccCCCCCccEEEccCCCCcCC---CcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCC--CCCC
Q 048831 632 PDTLGQVESLEELDISGTATRRP---PSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLP--SLSG 706 (1051)
Q Consensus 632 p~~l~~l~~L~~L~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~l~~ 706 (1051)
+. ..+++|++|++++|.+... +..+..+++|+.|++++|......+.......+..+...++.....++ .+.+
T Consensus 342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc
Confidence 54 7889999999999998766 567888999999999998754332211122334555666665544433 5788
Q ss_pred CCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCce--eccccccCCCCCCEEeccCCccccccCC---CCCCCce
Q 048831 707 LCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFV--TLPASISGLFNLKYLELEDCKRLQSLPQ---LPPNVIK 781 (1051)
Q Consensus 707 l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~c~~L~~lp~---lp~~L~~ 781 (1051)
+++|+.|++++|.+. ...+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+.....|. -.++|+.
T Consensus 420 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 420 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp CTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 999999999999885 456777888999999999999987 6888999999999999999975444353 2368899
Q ss_pred EeecCC
Q 048831 782 VSVNGC 787 (1051)
Q Consensus 782 L~i~~C 787 (1051)
|++.+|
T Consensus 499 L~l~~n 504 (570)
T 2z63_A 499 LNMASN 504 (570)
T ss_dssp EECCSS
T ss_pred EeCCCC
Confidence 999887
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.6e-26 Score=277.89 Aligned_cols=375 Identities=19% Similarity=0.213 Sum_probs=265.3
Q ss_pred CCCcEEEecCcccCC----cccccCcCceEEEEcCCCCCCCCC-CC-CCCCeeEEEcCccCccccccc-ccCCCCCCEEe
Q 048831 398 TNLRFLNIGNVQLPE----GLEYLSNKLRLLNWHRYPLKSLPS-NL-QLDKIVEFQMCYSHIEELWKG-IKPLNTLKVMK 470 (1051)
Q Consensus 398 ~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~ 470 (1051)
++|+.|+++++.+.. .+..+ .+|++|++++|.+..++. .| .+.+|++|++++|.+..++.. +..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 689999999988643 33333 479999999999998885 45 789999999999999988776 89999999999
Q ss_pred cCCCCCCC--CCCCCCCCCccCEEEeeCCCCChhhh-hhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceec
Q 048831 471 LSHSENLI--KTPNFIEVPNLEVLDLKGCTSLREIH-SSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLR 547 (1051)
Q Consensus 471 L~~~~~l~--~~~~~~~l~~L~~L~L~~c~~l~~l~-~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~ 547 (1051)
+++|.... .++.+.++++|++|++++|..+..++ ..+..+++|+.|+++++.--. ..|..+..+++|+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~l~~l~~L~ 175 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN---------YQSQSLKSIRDIH 175 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---------ECTTTTTTCSEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc---------cChhhhhccccCc
Confidence 99997653 23468999999999999988777776 478899999999999854221 2455677899999
Q ss_pred EEeeeCCCCCCcCchh-hCCCCCCCEEEecCccCcccC---cc-ccCCCCCCEE--------------------------
Q 048831 548 TLKLSGCSKLKKFPAI-VASMEDLSELYLDGTYITEVP---SS-IELLTGLELL-------------------------- 596 (1051)
Q Consensus 548 ~L~Ls~c~~~~~~p~~-~~~l~~L~~L~L~~~~i~~lp---~~-i~~l~~L~~L-------------------------- 596 (1051)
+|++++|.. ..+|.. +..+++|++|++++|.+..++ .. ...+++|+.|
T Consensus 176 ~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 176 HLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred eEecccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 999999764 444544 467899999999999888642 11 1223334444
Q ss_pred --ecCCCCCCC--ccc----cc-----------------------------ccCCCCCCEEeccCCCCCCcCCccc-CCC
Q 048831 597 --NLNDCKNLV--RLP----NS-----------------------------INGLKSLKTLNLSGCCKLENVPDTL-GQV 638 (1051)
Q Consensus 597 --~L~~~~~l~--~lp----~~-----------------------------i~~L~~L~~L~L~~c~~l~~lp~~l-~~l 638 (1051)
++++|...+ .++ .. ...+++|+.|++++|. +..+|..+ ..+
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l 333 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHL 333 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHC
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcC
Confidence 333332111 000 00 0112345556665554 34555554 457
Q ss_pred CCccEEEccCCCCcCC----CcccccccCCcEEEccCCCCCCCCC---cccCCccccccccCCCCccccCCCCCCCCCCC
Q 048831 639 ESLEELDISGTATRRP----PSSIFLMKNLKTLSFSGCNGPPSTA---SCHLNLPFNLMRKSSCPVALMLPSLSGLCSLS 711 (1051)
Q Consensus 639 ~~L~~L~l~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~ 711 (1051)
++|++|++++|.+... +..+..+++|+.|++++|....... .......+..+.+.++....+|..+..+++|+
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~ 413 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccccc
Confidence 7777777777776543 2235667777777777776543211 01112234455666666666788888999999
Q ss_pred EEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCccccccCC--CCCCCceEeecCCcc
Q 048831 712 KLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQSLPQ--LPPNVIKVSVNGCAS 789 (1051)
Q Consensus 712 ~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~~lp~--lp~~L~~L~i~~C~~ 789 (1051)
.|++++|.+.. ++..+ .++|+.|+|++|+++.++ ..+++|+.|++++|+ ++.+|. ..++|+.|++.+| .
T Consensus 414 ~L~Ls~N~l~~--l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N-~ 484 (549)
T 2z81_A 414 FLNLSSTGIRV--VKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNK-LKTLPDASLFPVLLVMKISRN-Q 484 (549)
T ss_dssp EEECTTSCCSC--CCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSSCCCGGGCTTCCEEECCSS-C
T ss_pred EEECCCCCccc--ccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCc-cCcCCCcccCccCCEEecCCC-c
Confidence 99999999864 44433 369999999999998876 578999999999995 678886 3578999999988 3
Q ss_pred cccc
Q 048831 790 LLTL 793 (1051)
Q Consensus 790 L~~~ 793 (1051)
+..+
T Consensus 485 l~~~ 488 (549)
T 2z81_A 485 LKSV 488 (549)
T ss_dssp CCCC
T ss_pred cCCc
Confidence 4443
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=6.4e-26 Score=265.93 Aligned_cols=322 Identities=20% Similarity=0.278 Sum_probs=148.8
Q ss_pred hcCCCCCcEEEecCcccCCccc-ccCcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEecC
Q 048831 394 FSLMTNLRFLNIGNVQLPEGLE-YLSNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLS 472 (1051)
Q Consensus 394 f~~~~~Lr~L~l~~~~l~~~~~-~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~ 472 (1051)
|..+++|+.|+++++.+..... .-..+|++|+++++.+..++....+.+|++|++++|.+..++. +..+++|++|+++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELS 142 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEE
T ss_pred hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECC
Confidence 4445555555555544332211 1112455555555555544442244555555555555544433 4445555555555
Q ss_pred CCCCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeee
Q 048831 473 HSENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLS 552 (1051)
Q Consensus 473 ~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls 552 (1051)
+|.. ..++.+..+++|++|++.+ .+..++ .+..+++|+.|++++|. +. .++ .+..+++|++|+++
T Consensus 143 ~n~l-~~~~~~~~l~~L~~L~l~~--~~~~~~-~~~~l~~L~~L~l~~n~-l~---------~~~-~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 143 SNTI-SDISALSGLTSLQQLSFGN--QVTDLK-PLANLTTLERLDISSNK-VS---------DIS-VLAKLTNLESLIAT 207 (466)
T ss_dssp EEEE-CCCGGGTTCTTCSEEEEEE--SCCCCG-GGTTCTTCCEEECCSSC-CC---------CCG-GGGGCTTCSEEECC
T ss_pred CCcc-CCChhhccCCcccEeecCC--cccCch-hhccCCCCCEEECcCCc-CC---------CCh-hhccCCCCCEEEec
Confidence 4432 2233444555555555542 122222 14445555555554432 11 111 13344555555555
Q ss_pred CCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCC
Q 048831 553 GCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVP 632 (1051)
Q Consensus 553 ~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp 632 (1051)
+|......| ++.+++|++|++++|.+..++ .+..+++|+.|++++|......| +..+++|+.|++++|.... ++
T Consensus 208 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~ 281 (466)
T 1o6v_A 208 NNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-IS 281 (466)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CG
T ss_pred CCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-cc
Confidence 544333222 344555555555555555443 34445555555555544322222 4455555555555543322 22
Q ss_pred cccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCE
Q 048831 633 DTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSK 712 (1051)
Q Consensus 633 ~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~ 712 (1051)
. +..+++|+.|++++|.+..++. +..+++|+.|++++|..... ++ +..+++|+.
T Consensus 282 ~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~-----------------------~~-~~~l~~L~~ 335 (466)
T 1o6v_A 282 P-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI-----------------------SP-VSSLTKLQR 335 (466)
T ss_dssp G-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC-----------------------GG-GGGCTTCCE
T ss_pred c-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc-----------------------hh-hccCccCCE
Confidence 2 4445555555555555444433 44455555555555443221 11 344555555
Q ss_pred EeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCc
Q 048831 713 LDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 713 L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
|++++|.+.+ + ..+..+++|+.|++++|.++.++. +..+++|+.|++++|+
T Consensus 336 L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 336 LFFYNNKVSD--V-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp EECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEE
T ss_pred eECCCCccCC--c-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCc
Confidence 5555555543 1 245555555555555555555443 5555555555555554
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.7e-25 Score=276.17 Aligned_cols=317 Identities=22% Similarity=0.226 Sum_probs=186.6
Q ss_pred CCEEecCCCCCCCCCC-CCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCcc----cc
Q 048831 466 LKVMKLSHSENLIKTP-NFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPV----TI 540 (1051)
Q Consensus 466 L~~L~L~~~~~l~~~~-~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~----~l 540 (1051)
|+.|++++|......| .|..+++|++|++++|......+..+..+++|+.|+++++..-..+ ....+|. .+
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~----~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI----SLASLPKIDDFSF 325 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----------CCEECTTTT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccc----ccccccccChhhc
Confidence 5555555554333322 2455555555555554433334445555555555555543211110 0112332 45
Q ss_pred ccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccC--cccCcc-ccC--CCCCCEEecCCCCCCCcccccccCCC
Q 048831 541 SSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYI--TEVPSS-IEL--LTGLELLNLNDCKNLVRLPNSINGLK 615 (1051)
Q Consensus 541 ~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i--~~lp~~-i~~--l~~L~~L~L~~~~~l~~lp~~i~~L~ 615 (1051)
..+++|++|++++|......+..+..+++|++|++++|.+ ..++.. +.. .++|+.|++++|......|..+..++
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 6678888888888776666666777788888888877753 233321 222 24677777777666555566677777
Q ss_pred CCCEEeccCCCCCCcCC-cccCCCCCccEEEccCCCCcCC-CcccccccCCcEEEccCCCCCC--CCCcc-cCCcccccc
Q 048831 616 SLKTLNLSGCCKLENVP-DTLGQVESLEELDISGTATRRP-PSSIFLMKNLKTLSFSGCNGPP--STASC-HLNLPFNLM 690 (1051)
Q Consensus 616 ~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~~~~~l 690 (1051)
+|+.|++++|.....+| ..+..+++|++|++++|.+..+ +..+..+++|+.|++.+|.... ..+.. .....+..+
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 77777777776555454 4566777777777777765544 3355566677777776665421 11111 111233444
Q ss_pred ccCCCCccccCC-CCCCCCCCCEEeccCCCCCCc---c----ccccccCCCcCcEEeccCCCceeccc-cccCCCCCCEE
Q 048831 691 RKSSCPVALMLP-SLSGLCSLSKLDLSDCGLREG---A----ILSDICNLHSLKELYLSGNNFVTLPA-SISGLFNLKYL 761 (1051)
Q Consensus 691 ~~~~~~~~~~~~-~l~~l~~L~~L~L~~~~l~~~---~----~~~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L 761 (1051)
.+.++....+++ .+.++++|+.|++++|.+... . .+..+..+++|+.|+|++|.++.+|. .+.++++|+.|
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 555554444444 367788888888888877531 1 11236677888888888888888876 46778888888
Q ss_pred eccCCccccccCCC----CCCCceEeecCC
Q 048831 762 ELEDCKRLQSLPQL----PPNVIKVSVNGC 787 (1051)
Q Consensus 762 ~l~~c~~L~~lp~l----p~~L~~L~i~~C 787 (1051)
++++|. ++.+|.- .++|+.|++.++
T Consensus 566 ~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 566 DLGLNN-LNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred ECCCCC-CCcCCHhHhCCCCCCCEEECCCC
Confidence 887775 5566641 267888888776
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=3.9e-26 Score=274.72 Aligned_cols=358 Identities=16% Similarity=0.143 Sum_probs=244.0
Q ss_pred CCCcEEEecCcccCCcc----cccCcCceEEEEcCCCCCCCCC-CC-CCCCeeEEEcCccCcccccccccCCCCCCEEec
Q 048831 398 TNLRFLNIGNVQLPEGL----EYLSNKLRLLNWHRYPLKSLPS-NL-QLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKL 471 (1051)
Q Consensus 398 ~~Lr~L~l~~~~l~~~~----~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L 471 (1051)
++|+.|++++|.+.... ..+ .+|++|++++|.++.+++ .| .+.+|++|++++|.+..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 67888888888764432 222 368888888888887744 45 678888888888888888777 7888888888
Q ss_pred CCCCCCCC-CC-CCCCCCccCEEEeeCCCCChhhhhhhccCCCC--cEEecCCCCC--CCccCCCC-CC-----------
Q 048831 472 SHSENLIK-TP-NFIEVPNLEVLDLKGCTSLREIHSSLLRHNKL--ILLNLKGCTS--LTTLPDCK-NL----------- 533 (1051)
Q Consensus 472 ~~~~~l~~-~~-~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L--~~L~L~~c~~--l~~l~~~~-~l----------- 533 (1051)
++|..... .| .|+++++|++|++++|.... ..+..+.+| +.|+++++.. ....|... .+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 88875542 22 47788888888888754322 234445555 8888877643 22212100 00
Q ss_pred ----CCC-ccccccCceecEEeeeCCCCC----CcCchhhC---------------------------CCCCCCEEEecC
Q 048831 534 ----SSL-PVTISSLKCLRTLKLSGCSKL----KKFPAIVA---------------------------SMEDLSELYLDG 577 (1051)
Q Consensus 534 ----~~l-p~~l~~l~~L~~L~Ls~c~~~----~~~p~~~~---------------------------~l~~L~~L~L~~ 577 (1051)
..+ ...+..+++|+.|++++|... ...+..+. ...+|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 001 112345667777777765310 00000111 123677777777
Q ss_pred ccCc-ccCccc-----cCC--------------------------CCCCEEecCCCCCCCcccccccCCCCCCEEeccCC
Q 048831 578 TYIT-EVPSSI-----ELL--------------------------TGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGC 625 (1051)
Q Consensus 578 ~~i~-~lp~~i-----~~l--------------------------~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c 625 (1051)
|.+. .+|..+ .++ .+|+.|++++|..... + ....+++|++|++++|
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~-~-~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM-V-CPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSS
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc-c-CccCCCCceEEECCCC
Confidence 7766 566554 333 3355666655543211 1 1167899999999999
Q ss_pred CCCCcCCcccCCCCCccEEEccCCCCcCCC---cccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCC
Q 048831 626 CKLENVPDTLGQVESLEELDISGTATRRPP---SSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLP 702 (1051)
Q Consensus 626 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 702 (1051)
...+.+|..++.+++|+.|++++|.+..++ ..+..+++|+.|++++|......+ ..
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------------------~~ 422 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY---------------------DR 422 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS---------------------SC
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC---------------------hh
Confidence 888888999999999999999999988765 467889999999999998654221 22
Q ss_pred CCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCccccccCCC----CCC
Q 048831 703 SLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQSLPQL----PPN 778 (1051)
Q Consensus 703 ~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~~lp~l----p~~ 778 (1051)
.+..+++|+.|++++|.+.. ..|..+. ++|+.|+|++|.++.+|..+..+++|+.|++++|+ ++.+|.. .++
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~-~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTG-SVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTS 498 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCG-GGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTT
T ss_pred hhcCcccCCEEECCCCCCCc-chhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCC
Confidence 36778999999999999863 4444433 79999999999999999988999999999999986 6677752 246
Q ss_pred CceEeecCCc
Q 048831 779 VIKVSVNGCA 788 (1051)
Q Consensus 779 L~~L~i~~C~ 788 (1051)
|+.|++.+++
T Consensus 499 L~~L~l~~N~ 508 (562)
T 3a79_B 499 LQYIWLHDNP 508 (562)
T ss_dssp CCCEECCSCC
T ss_pred CCEEEecCCC
Confidence 6667766654
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.4e-25 Score=263.17 Aligned_cols=339 Identities=20% Similarity=0.313 Sum_probs=272.6
Q ss_pred CCCCcEEEecCcccCC--cccccCcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEecCCC
Q 048831 397 MTNLRFLNIGNVQLPE--GLEYLSNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHS 474 (1051)
Q Consensus 397 ~~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~ 474 (1051)
+++|+.|++.++.+.. ++.. ..+|++|+++++.++.+|....+.+|++|++++|.+..++. +..+++|++|++++|
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~-l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEY-LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 122 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGG-CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred hccccEEecCCCCCccCcchhh-hcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence 4578899998877533 2333 34799999999999999984489999999999999998887 899999999999998
Q ss_pred CCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCC
Q 048831 475 ENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGC 554 (1051)
Q Consensus 475 ~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c 554 (1051)
.. ..++.+.++++|++|++++|. +..++ .+..+++|+.|++.+. + ..++ .+.++++|++|++++|
T Consensus 123 ~l-~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~--~---------~~~~-~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 123 QI-TDIDPLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQ--V---------TDLK-PLANLTTLERLDISSN 187 (466)
T ss_dssp CC-CCCGGGTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEES--C---------CCCG-GGTTCTTCCEEECCSS
T ss_pred CC-CCChHHcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCc--c---------cCch-hhccCCCCCEEECcCC
Confidence 64 444559999999999999874 45554 4888999999998641 1 1222 2677999999999998
Q ss_pred CCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcc
Q 048831 555 SKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDT 634 (1051)
Q Consensus 555 ~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~ 634 (1051)
.. ..++ .+..+++|++|++++|.+..++. ++.+++|+.|++++|... .++ .+..+++|+.|++++|......+
T Consensus 188 ~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 188 KV-SDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CC-CCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCGG--
T ss_pred cC-CCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc-cch-hhhcCCCCCEEECCCCccccchh--
Confidence 74 4444 47889999999999999998765 788999999999998643 344 57889999999999987654433
Q ss_pred cCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEe
Q 048831 635 LGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLD 714 (1051)
Q Consensus 635 l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~ 714 (1051)
+..+++|++|++++|.+..++. +..+++|+.|++++|..... + .+..+++|+.|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~-----------------------~-~~~~l~~L~~L~ 315 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDI-----------------------S-PISNLKNLTYLT 315 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCC-----------------------G-GGGGCTTCSEEE
T ss_pred hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCc-----------------------h-hhcCCCCCCEEE
Confidence 8899999999999999988876 88899999999999875432 2 267789999999
Q ss_pred ccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCccccccC-CCCCCCceEeecCCc
Q 048831 715 LSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQSLP-QLPPNVIKVSVNGCA 788 (1051)
Q Consensus 715 L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~~lp-~lp~~L~~L~i~~C~ 788 (1051)
+++|++.+ .+. +..+++|+.|++++|.++.++ .+..+++|+.|++++|+.....| .-.++|+.|++.+|+
T Consensus 316 L~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 316 LYFNNISD--ISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp CCSSCCSC--CGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred CcCCcCCC--chh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 99999875 222 788999999999999999885 78899999999999997544433 123577888887764
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=6.7e-26 Score=265.60 Aligned_cols=338 Identities=18% Similarity=0.124 Sum_probs=265.0
Q ss_pred eEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccc-cccccCCCCCCEEecCCCCCCCCCC--CCCCCCccCEEEeeCCC
Q 048831 422 RLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEEL-WKGIKPLNTLKVMKLSHSENLIKTP--NFIEVPNLEVLDLKGCT 498 (1051)
Q Consensus 422 r~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~l~~L~~L~L~~c~ 498 (1051)
+.++..+..++.+|. -+++|++|++++|.+..+ +..+..+++|++|++++|.....++ .|.++++|++|+|++|.
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 457778888999998 558999999999999988 6679999999999999998764443 48999999999999987
Q ss_pred CChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCcc--ccccCceecEEeeeCCCCCCcCchh-hCCCCCCCEEEe
Q 048831 499 SLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPV--TISSLKCLRTLKLSGCSKLKKFPAI-VASMEDLSELYL 575 (1051)
Q Consensus 499 ~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~--~l~~l~~L~~L~Ls~c~~~~~~p~~-~~~l~~L~~L~L 575 (1051)
.....|..+..+++|++|++++|.--.. +|. .+..+++|++|+|++|......|.. +..+++|++|++
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGA---------VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTH---------HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCcc---------ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 6555688899999999999998642211 222 2677999999999999877776765 889999999999
Q ss_pred cCccCccc-CccccCC--CCCCEEecCCCCCCCccccc--------ccCCCCCCEEeccCCCCCCcCCcccCCC---CCc
Q 048831 576 DGTYITEV-PSSIELL--TGLELLNLNDCKNLVRLPNS--------INGLKSLKTLNLSGCCKLENVPDTLGQV---ESL 641 (1051)
Q Consensus 576 ~~~~i~~l-p~~i~~l--~~L~~L~L~~~~~l~~lp~~--------i~~L~~L~~L~L~~c~~l~~lp~~l~~l---~~L 641 (1051)
++|.+..+ |..+..+ .+|+.|++++|......+.. +..+++|++|++++|......|..+..+ ++|
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 241 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence 99999865 4556665 78999999998755433322 3467899999999998877766655443 889
Q ss_pred cEEEccCCCCcCCC-----------cccc--cccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCC
Q 048831 642 EELDISGTATRRPP-----------SSIF--LMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLC 708 (1051)
Q Consensus 642 ~~L~l~~~~~~~~~-----------~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~ 708 (1051)
+.|++++|...... ..+. ..++|+.|++++|..... .+..+.+++
T Consensus 242 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----------------------~~~~~~~l~ 299 (455)
T 3v47_A 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL----------------------LKSVFSHFT 299 (455)
T ss_dssp EEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE----------------------CTTTTTTCT
T ss_pred eeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc----------------------chhhcccCC
Confidence 99999988643221 1122 236899999999875432 255688899
Q ss_pred CCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceec-cccccCCCCCCEEeccCCccccccCC---CCCCCceEee
Q 048831 709 SLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTL-PASISGLFNLKYLELEDCKRLQSLPQ---LPPNVIKVSV 784 (1051)
Q Consensus 709 ~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~c~~L~~lp~---lp~~L~~L~i 784 (1051)
+|+.|+|++|.+. ...+..+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|..-...|. -.++|+.|++
T Consensus 300 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 300 DLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 9999999999996 44567889999999999999999987 56789999999999999975433353 2378999999
Q ss_pred cCCccccccc
Q 048831 785 NGCASLLTLL 794 (1051)
Q Consensus 785 ~~C~~L~~~~ 794 (1051)
.+|. ++.++
T Consensus 379 ~~N~-l~~~~ 387 (455)
T 3v47_A 379 DTNQ-LKSVP 387 (455)
T ss_dssp CSSC-CSCCC
T ss_pred CCCc-cccCC
Confidence 8873 44443
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=2.5e-25 Score=267.60 Aligned_cols=357 Identities=17% Similarity=0.136 Sum_probs=259.1
Q ss_pred CCcEEEecCcccCCcccccCcCceEEEEcCCCCCCCCC-CC-CCCCeeEEEcCccCcccc-cccccCCCCCCEEecCCCC
Q 048831 399 NLRFLNIGNVQLPEGLEYLSNKLRLLNWHRYPLKSLPS-NL-QLDKIVEFQMCYSHIEEL-WKGIKPLNTLKVMKLSHSE 475 (1051)
Q Consensus 399 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~L~~~~ 475 (1051)
..+.++++++.+...+..++.+++.|++++|.+..+|. .+ .+.+|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 44899999998876666667899999999999999985 45 899999999999999988 5568999999999999997
Q ss_pred CCCCCCCCCCCCccCEEEeeCCCCCh-hhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCce--ecEEeee
Q 048831 476 NLIKTPNFIEVPNLEVLDLKGCTSLR-EIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKC--LRTLKLS 552 (1051)
Q Consensus 476 ~l~~~~~~~~l~~L~~L~L~~c~~l~-~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~--L~~L~Ls 552 (1051)
.. .+|.. .+++|++|+|++|.... .+|..+..+++|++|+++++. +.. ..+..+++ |++|+++
T Consensus 112 l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~-----------~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 112 LQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ-----------LDLLPVAHLHLSCILLD 177 (562)
T ss_dssp CC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT-----------TTTGGGTTSCEEEEEEE
T ss_pred CC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-ccc-----------CchhhhhhceeeEEEee
Confidence 54 56655 89999999999976433 345789999999999999843 211 12333444 4999999
Q ss_pred CCCC--CCcCchhhCC--------------------------CCCCCEEEecCccCc-----ccCcccc-----------
Q 048831 553 GCSK--LKKFPAIVAS--------------------------MEDLSELYLDGTYIT-----EVPSSIE----------- 588 (1051)
Q Consensus 553 ~c~~--~~~~p~~~~~--------------------------l~~L~~L~L~~~~i~-----~lp~~i~----------- 588 (1051)
+|.. ....|..+.. +++|+.|++++|... ..+..+.
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 9877 5555544443 456777777776310 0011111
Q ss_pred ----------------CCCCCCEEecCCCCCCCcccccc-----cCCC--------------------------CCCEEe
Q 048831 589 ----------------LLTGLELLNLNDCKNLVRLPNSI-----NGLK--------------------------SLKTLN 621 (1051)
Q Consensus 589 ----------------~l~~L~~L~L~~~~~l~~lp~~i-----~~L~--------------------------~L~~L~ 621 (1051)
..++|++|++++|...+.+|..+ ..++ +|+.|+
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEE
Confidence 12367778887777666677655 3333 355555
Q ss_pred ccCCCCCCcCCcccCCCCCccEEEccCCCCcC-CCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCcccc
Q 048831 622 LSGCCKLENVPDTLGQVESLEELDISGTATRR-PPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALM 700 (1051)
Q Consensus 622 L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 700 (1051)
+++|...... ..+.+++|++|++++|.+.. .|..+..+++|+.|++++|...... .+
T Consensus 338 l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------~~ 395 (562)
T 3a79_B 338 ISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--------------------KV 395 (562)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT--------------------HH
T ss_pred ccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc--------------------cc
Confidence 5555432111 12688999999999999887 6788999999999999998754320 11
Q ss_pred CCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCce-eccccccCCCCCCEEeccCCccccccCC-C--C
Q 048831 701 LPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFV-TLPASISGLFNLKYLELEDCKRLQSLPQ-L--P 776 (1051)
Q Consensus 701 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~c~~L~~lp~-l--p 776 (1051)
+..+.++++|+.|++++|.+.....+..+..+++|+.|++++|.++ .+|..+. ++|+.|++++|. ++.+|. + .
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l 472 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHL 472 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSS
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCC
Confidence 3457889999999999999864233345788999999999999986 3444433 799999999994 778875 2 3
Q ss_pred CCCceEeecCCcccccccc
Q 048831 777 PNVIKVSVNGCASLLTLLG 795 (1051)
Q Consensus 777 ~~L~~L~i~~C~~L~~~~~ 795 (1051)
++|+.|++.++. +..++.
T Consensus 473 ~~L~~L~L~~N~-l~~l~~ 490 (562)
T 3a79_B 473 QALQELNVASNQ-LKSVPD 490 (562)
T ss_dssp CCCSEEECCSSC-CCCCCT
T ss_pred CCCCEEECCCCC-CCCCCH
Confidence 689999998874 555554
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=1.5e-25 Score=264.03 Aligned_cols=313 Identities=21% Similarity=0.212 Sum_probs=231.6
Q ss_pred eEEEEcCCCCCCCCCCCCCCCeeEEEcCccCccccc-ccccCCCCCCEEecCCCCCCCCCC-CCCCCCccCEEEeeCCCC
Q 048831 422 RLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELW-KGIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLKGCTS 499 (1051)
Q Consensus 422 r~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~L~~c~~ 499 (1051)
+.++.++..++.+|..+ +.+++.|++++|++..++ ..+..+++|++|+|++|......| .|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~- 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR- 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-
Confidence 34555666666666654 356677777777777664 346677777777777775544433 36777777777777643
Q ss_pred Chhhhh-hhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCc
Q 048831 500 LREIHS-SLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGT 578 (1051)
Q Consensus 500 l~~l~~-si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~ 578 (1051)
+..++. .+..+++|+.|+++++.-.. + .|..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVI-L--------LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCE-E--------CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CCccCcccccCCCCCCEEECCCCcccc-C--------ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 445554 35667777777777643211 1 1334566788888888887766666777888888888888888
Q ss_pred cCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCc-
Q 048831 579 YITEVPS-SIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPS- 656 (1051)
Q Consensus 579 ~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~- 656 (1051)
.++.+|. .+.++++|+.|++++|......+..+..+++|+.|++++|..+..+|.......+|+.|++++|.+..+|.
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH
Confidence 8887765 47888888888888887666666678888889999998888888888777777789999999998888874
Q ss_pred ccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCc
Q 048831 657 SIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLK 736 (1051)
Q Consensus 657 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~ 736 (1051)
.+..+++|+.|++++|...... +..+.++++|+.|+|++|++. ...+..+..+++|+
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~----------------------~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIE----------------------GSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLR 299 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEEC----------------------TTSCTTCTTCCEEECCSSCCS-EECTTTBTTCTTCC
T ss_pred HhcCccccCeeECCCCcCCccC----------------------hhhccccccCCEEECCCCccc-eECHHHhcCcccCC
Confidence 5778899999999888643221 334778889999999999886 34577888999999
Q ss_pred EEeccCCCceecccc-ccCCCCCCEEeccCCcc
Q 048831 737 ELYLSGNNFVTLPAS-ISGLFNLKYLELEDCKR 768 (1051)
Q Consensus 737 ~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~c~~ 768 (1051)
.|+|++|.++.+|.. +..+++|+.|++++|+.
T Consensus 300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred EEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 999999999988764 57889999999999873
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=7.2e-25 Score=254.44 Aligned_cols=51 Identities=31% Similarity=0.276 Sum_probs=25.1
Q ss_pred CCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCc
Q 048831 709 SLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 709 ~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
+|+.|++++|++.+ +|.. +++|+.|++++|.++.+|. .+++|+.|++++|+
T Consensus 318 ~L~~L~Ls~N~l~~--lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 318 SLEELNVSNNKLIE--LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp TCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred cCCEEECCCCcccc--cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCC
Confidence 45555555555432 3322 3455555555555555554 34555555555543
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=4e-25 Score=248.95 Aligned_cols=301 Identities=19% Similarity=0.236 Sum_probs=250.1
Q ss_pred CCCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEe
Q 048831 438 LQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLN 517 (1051)
Q Consensus 438 ~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~ 517 (1051)
..+++|+.|++.++.+..++ ++..+++|++|++++|... .++.+..+++|++|++++| .+..++ .+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccc-cchhhhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 36889999999999999886 4889999999999999644 4455999999999999997 455664 689999999999
Q ss_pred cCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEe
Q 048831 518 LKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLN 597 (1051)
Q Consensus 518 L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 597 (1051)
+++|. +..+|. +..+++|++|++++|.....++. +..+++|++|++++|.+..++. +..+++|+.|+
T Consensus 117 l~~n~----------i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~ 183 (347)
T 4fmz_A 117 LNEDN----------ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLS 183 (347)
T ss_dssp CTTSC----------CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEE
T ss_pred CcCCc----------ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEE
Confidence 99853 334444 67799999999999988877665 8899999999999999998876 88999999999
Q ss_pred cCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCC
Q 048831 598 LNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPS 677 (1051)
Q Consensus 598 L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 677 (1051)
+++|.. ..++. +..+++|+.|++++|..... +. +..+++|++|++++|.+..++. +..+++|+.|++++|....
T Consensus 184 l~~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~- 257 (347)
T 4fmz_A 184 LNYNQI-EDISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD- 257 (347)
T ss_dssp CTTSCC-CCCGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-
T ss_pred ccCCcc-ccccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-
Confidence 999864 44444 88899999999999865543 33 8889999999999999998877 8899999999999986543
Q ss_pred CCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceec-cccccCCC
Q 048831 678 TASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTL-PASISGLF 756 (1051)
Q Consensus 678 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~ 756 (1051)
.+.+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.++.. |..+..++
T Consensus 258 -----------------------~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 258 -----------------------INAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp -----------------------CGGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred -----------------------ChhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 2346788999999999999875 3 4578899999999999999865 45688999
Q ss_pred CCCEEeccCCccccccCC--CCCCCceEeecCCc
Q 048831 757 NLKYLELEDCKRLQSLPQ--LPPNVIKVSVNGCA 788 (1051)
Q Consensus 757 ~L~~L~l~~c~~L~~lp~--lp~~L~~L~i~~C~ 788 (1051)
+|+.|++++|+ +..++. -.++|+.|++.+|+
T Consensus 312 ~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 312 NLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp TCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred cCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 99999999998 444443 33678888887764
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=256.43 Aligned_cols=313 Identities=18% Similarity=0.184 Sum_probs=259.3
Q ss_pred cEEEecCcccCCcccccCcCceEEEEcCCCCCCCCC-CC-CCCCeeEEEcCccCcccc-cccccCCCCCCEEecCCCCCC
Q 048831 401 RFLNIGNVQLPEGLEYLSNKLRLLNWHRYPLKSLPS-NL-QLDKIVEFQMCYSHIEEL-WKGIKPLNTLKVMKLSHSENL 477 (1051)
Q Consensus 401 r~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~L~~~~~l 477 (1051)
+.++.++..+...+..++..++.|+++++.++.++. .| .+.+|++|++++|.+..+ +..+..+++|++|+|++|...
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 455666666555555567789999999999998865 45 799999999999999988 667999999999999999755
Q ss_pred CCCCC-CCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCC-ccccccCceecEEeeeCCC
Q 048831 478 IKTPN-FIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSL-PVTISSLKCLRTLKLSGCS 555 (1051)
Q Consensus 478 ~~~~~-~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~l-p~~l~~l~~L~~L~Ls~c~ 555 (1051)
...+. |.++++|++|+|++|......+..+..+++|+.|+++++. +..+ |..+..+++|++|+|++|.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~----------l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND----------LVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT----------CCEECTTSSTTCTTCCEEEEESCC
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc----------cceeChhhccCCCCCCEEECCCCc
Confidence 44443 7899999999999987666667788999999999999853 2222 3357779999999999997
Q ss_pred CCCcCchhhCCCCCCCEEEecCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCC-c
Q 048831 556 KLKKFPAIVASMEDLSELYLDGTYITEVPS-SIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVP-D 633 (1051)
Q Consensus 556 ~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp-~ 633 (1051)
.....+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.....+|..+....+|+.|++++|... .+| .
T Consensus 164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~ 242 (477)
T 2id5_A 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYL 242 (477)
T ss_dssp CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHH
T ss_pred CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHH
Confidence 666666779999999999999999998765 6899999999999999999999988888889999999998655 455 5
Q ss_pred ccCCCCCccEEEccCCCCcCCCc-ccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCE
Q 048831 634 TLGQVESLEELDISGTATRRPPS-SIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSK 712 (1051)
Q Consensus 634 ~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~ 712 (1051)
.+..+++|+.|++++|.+..++. .+..+++|+.|++++|..... .+..+.++++|+.
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------------~~~~~~~l~~L~~ 300 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV----------------------EPYAFRGLNYLRV 300 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE----------------------CTTTBTTCTTCCE
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE----------------------CHHHhcCcccCCE
Confidence 78999999999999999887754 578899999999999875432 1456788999999
Q ss_pred EeccCCCCCCccccccccCCCcCcEEeccCCCcee
Q 048831 713 LDLSDCGLREGAILSDICNLHSLKELYLSGNNFVT 747 (1051)
Q Consensus 713 L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 747 (1051)
|+|++|.+.. ..+..+..+++|+.|+|++|.+..
T Consensus 301 L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 301 LNVSGNQLTT-LEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp EECCSSCCSC-CCGGGBSCGGGCCEEECCSSCEEC
T ss_pred EECCCCcCce-eCHhHcCCCcccCEEEccCCCccC
Confidence 9999999964 344567889999999999999873
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=5.3e-24 Score=247.33 Aligned_cols=280 Identities=18% Similarity=0.151 Sum_probs=156.4
Q ss_pred CCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEec
Q 048831 439 QLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNL 518 (1051)
Q Consensus 439 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L 518 (1051)
.+.+|++|++++|.+..++ +..+++|++|++++|.... ++ ++++++|++|++++| .+..++ +..+++|+.|++
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~-~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD-VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNC 134 (457)
T ss_dssp GCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEEC
T ss_pred ccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee-cCCCCcCCEEECCCC-cCCeec--CCCCCcCCEEEC
Confidence 4444455555554444443 4444555555555543222 22 445555555555543 233332 445555555555
Q ss_pred CCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEec
Q 048831 519 KGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNL 598 (1051)
Q Consensus 519 ~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 598 (1051)
+++. +..++ ++.+++|++|++++|..++.+ .+..+++|++|++++|.++.+| +..+++|+.|++
T Consensus 135 ~~N~----------l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l 198 (457)
T 3bz5_A 135 ARNT----------LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNC 198 (457)
T ss_dssp TTSC----------CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEEC
T ss_pred CCCc----------cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEEC
Confidence 5431 11111 334556666666666555544 2455666666666666666655 556666666666
Q ss_pred CCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCC
Q 048831 599 NDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPST 678 (1051)
Q Consensus 599 ~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 678 (1051)
++|.... + .+..+++|+.|++++|.... +| ++.+++|+.|++++|.+..+| +..+++|+.|++++++...
T Consensus 199 ~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~-- 268 (457)
T 3bz5_A 199 DTNNITK-L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLE-- 268 (457)
T ss_dssp CSSCCSC-C--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSC--
T ss_pred cCCcCCe-e--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCE--
Confidence 6655332 2 25566666666666654433 44 556666666666666666654 3445566666555543211
Q ss_pred CcccCCccccccccCCCC-ccccCCCCCCCCCCCEEeccCCCCCCccccc--------cccCCCcCcEEeccCCCceecc
Q 048831 679 ASCHLNLPFNLMRKSSCP-VALMLPSLSGLCSLSKLDLSDCGLREGAILS--------DICNLHSLKELYLSGNNFVTLP 749 (1051)
Q Consensus 679 ~~~~~~~~~~~l~~~~~~-~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~--------~l~~l~~L~~L~L~~n~l~~lp 749 (1051)
+....+. ...+| ++++++|+.|++++|.... .+|. .+..+++|+.|++++|+++.++
T Consensus 269 -----------L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~-~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~ 334 (457)
T 3bz5_A 269 -----------IDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY-LLDCQAAGITELDLSQNPKLVYLYLNNTELTELD 334 (457)
T ss_dssp -----------CCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC-EEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred -----------EECCCCccCCccc--ccccccCCEEECCCCcccc-eeccCCCcceEechhhcccCCEEECCCCcccccc
Confidence 1111111 11112 4567888888888886542 2332 2456678999999999998875
Q ss_pred ccccCCCCCCEEeccCCc
Q 048831 750 ASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 750 ~~~~~l~~L~~L~l~~c~ 767 (1051)
+..+++|+.|++++|+
T Consensus 335 --l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 335 --VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp --CTTCTTCSEEECCSSC
T ss_pred --cccCCcCcEEECCCCC
Confidence 8889999999999886
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-24 Score=247.47 Aligned_cols=299 Identities=17% Similarity=0.165 Sum_probs=156.6
Q ss_pred CceEEEEcCCCCCCCCCCC--CCCCeeEEEcCccCcccccc-cccCCCCCCEEecCCCCCCCCCCC-CCCCCccCEEEee
Q 048831 420 KLRLLNWHRYPLKSLPSNL--QLDKIVEFQMCYSHIEELWK-GIKPLNTLKVMKLSHSENLIKTPN-FIEVPNLEVLDLK 495 (1051)
Q Consensus 420 ~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~L~ 495 (1051)
++++|++.++.++.+|..+ .+++|++|+++++.+..++. .+..+++|++|++++|......|. +.++++|++|+|+
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 4566666666666666543 45556666665555555543 355555555555555544333333 4455555555555
Q ss_pred CCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEe
Q 048831 496 GCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYL 575 (1051)
Q Consensus 496 ~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L 575 (1051)
+| .+..+|..+ +..+++|++|++++|......|..+..+++|++|++
T Consensus 126 ~n-~l~~l~~~~--------------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 126 RN-DLSSLPRGI--------------------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp SS-CCCCCCTTT--------------------------------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred CC-ccCcCCHHH--------------------------------hcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 43 223333321 234555555555555444444444555556666666
Q ss_pred cCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCC
Q 048831 576 DGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPP 655 (1051)
Q Consensus 576 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~ 655 (1051)
++|.++.++ +..+++|+.|++++|... .+...++|+.|++++|... .+|.. ..++|+.|++++|.+...
T Consensus 173 ~~n~l~~~~--~~~l~~L~~L~l~~n~l~-----~~~~~~~L~~L~l~~n~l~-~~~~~--~~~~L~~L~l~~n~l~~~- 241 (390)
T 3o6n_A 173 SSNRLTHVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGP--VNVELTILKLQHNNLTDT- 241 (390)
T ss_dssp CSSCCSBCC--GGGCTTCSEEECCSSCCS-----EEECCSSCSEEECCSSCCC-EEECC--CCSSCCEEECCSSCCCCC-
T ss_pred CCCcCCccc--cccccccceeeccccccc-----ccCCCCcceEEECCCCeee-ecccc--ccccccEEECCCCCCccc-
Confidence 666555543 444555666666554321 1223345666666655432 22221 234566666666665554
Q ss_pred cccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcC
Q 048831 656 SSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSL 735 (1051)
Q Consensus 656 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L 735 (1051)
..+..+++|+.|++++|..... .+..+.++++|+.|+|++|++.. ++.....+++|
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~----------------------~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L 297 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKI----------------------MYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTL 297 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEE----------------------ESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTC
T ss_pred HHHcCCCCccEEECCCCcCCCc----------------------ChhHccccccCCEEECCCCcCcc--cCcccCCCCCC
Confidence 3455566666666666543221 13335556666666666666643 44445556666
Q ss_pred cEEeccCCCceeccccccCCCCCCEEeccCCccccccC-CCCCCCceEeecCC
Q 048831 736 KELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQSLP-QLPPNVIKVSVNGC 787 (1051)
Q Consensus 736 ~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~~lp-~lp~~L~~L~i~~C 787 (1051)
+.|+|++|.++.+|..+..+++|+.|++++|+ +..+| ...++|+.|++.++
T Consensus 298 ~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp CEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSS
T ss_pred CEEECCCCcceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCC
Confidence 66666666666666666666666666666665 33333 12344555555443
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=4.9e-24 Score=247.39 Aligned_cols=326 Identities=21% Similarity=0.225 Sum_probs=250.3
Q ss_pred hhhhcCCCCCcEEEecCcc----cCCcccccCc------------CceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcc
Q 048831 391 AKAFSLMTNLRFLNIGNVQ----LPEGLEYLSN------------KLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIE 454 (1051)
Q Consensus 391 ~~~f~~~~~Lr~L~l~~~~----l~~~~~~l~~------------~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~ 454 (1051)
+..|.++++|+.|+++++. +|..+..+.. +++.|+++++.++.+|.. +++|++|++++|.+.
T Consensus 27 P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 27 PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLT 104 (454)
T ss_dssp -------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCS
T ss_pred ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCcCC
Confidence 4568899999999998875 3554444332 469999999999999883 589999999999999
Q ss_pred cccccccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCC
Q 048831 455 ELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLS 534 (1051)
Q Consensus 455 ~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~ 534 (1051)
.+|.. +.+|++|++++|... .++.+ .++|++|++++|. +..+| ++..+++|++|+++++. ++.+|
T Consensus 105 ~lp~~---~~~L~~L~l~~n~l~-~l~~~--~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N~-l~~lp------ 169 (454)
T 1jl5_A 105 ELPEL---PQSLKSLLVDNNNLK-ALSDL--PPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNS-LKKLP------ 169 (454)
T ss_dssp SCCCC---CTTCCEEECCSSCCS-CCCSC--CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSCCC------
T ss_pred ccccc---cCCCcEEECCCCccC-cccCC--CCCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCCc-CcccC------
Confidence 88854 478999999998543 34432 2699999999874 55687 68999999999999853 33333
Q ss_pred CCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCC
Q 048831 535 SLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGL 614 (1051)
Q Consensus 535 ~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L 614 (1051)
.. ..+|++|++++|.. ..+| .++.+++|++|++++|.+..+|... ++|+.|++++|.. ..+|. +..+
T Consensus 170 ---~~---~~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l-~~lp~-~~~l 236 (454)
T 1jl5_A 170 ---DL---PPSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNIL-EELPE-LQNL 236 (454)
T ss_dssp ---CC---CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCC-SSCCC-CTTC
T ss_pred ---CC---cccccEEECcCCcC-CcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcC-Ccccc-cCCC
Confidence 22 34899999999864 4477 5889999999999999999887643 5899999999865 47884 8899
Q ss_pred CCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCC
Q 048831 615 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSS 694 (1051)
Q Consensus 615 ~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 694 (1051)
++|++|++++|.. ..+|.. +++|+.|++++|.+..+|.. +++|+.|++++|.....
T Consensus 237 ~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l----------------- 292 (454)
T 1jl5_A 237 PFLTTIYADNNLL-KTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL----------------- 292 (454)
T ss_dssp TTCCEEECCSSCC-SSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE-----------------
T ss_pred CCCCEEECCCCcC-Cccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc-----------------
Confidence 9999999999764 446653 47899999999998888764 48899999998864321
Q ss_pred CCccccCCCCCCCCCCCEEeccCCCCCCccccccccCC-CcCcEEeccCCCceeccccccCCCCCCEEeccCCccccccC
Q 048831 695 CPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNL-HSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQSLP 773 (1051)
Q Consensus 695 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~~lp 773 (1051)
+. + .++|+.|++++|.+.. ++ .+ ++|+.|++++|.++.+|.. +++|+.|++++|. ++.+|
T Consensus 293 ------~~-~--~~~L~~L~l~~N~l~~--i~----~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~-l~~lp 353 (454)
T 1jl5_A 293 ------SE-L--PPNLYYLNASSNEIRS--LC----DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVP 353 (454)
T ss_dssp ------SC-C--CTTCCEEECCSSCCSE--EC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCC
T ss_pred ------cC-c--CCcCCEEECcCCcCCc--cc----CCcCcCCEEECCCCcccccccc---CCcCCEEECCCCc-ccccc
Confidence 11 1 2589999999998863 32 33 5899999999999998865 6899999999985 77898
Q ss_pred CCCCCCceEeecCCcc
Q 048831 774 QLPPNVIKVSVNGCAS 789 (1051)
Q Consensus 774 ~lp~~L~~L~i~~C~~ 789 (1051)
..+++|+.|++.++.-
T Consensus 354 ~~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 354 ELPQNLKQLHVEYNPL 369 (454)
T ss_dssp CCCTTCCEEECCSSCC
T ss_pred chhhhccEEECCCCCC
Confidence 8889999999998753
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.7e-24 Score=258.78 Aligned_cols=299 Identities=17% Similarity=0.169 Sum_probs=151.1
Q ss_pred CceEEEEcCCCCCCCCCCC--CCCCeeEEEcCccCcccccc-cccCCCCCCEEecCCCCCCCCCCC-CCCCCccCEEEee
Q 048831 420 KLRLLNWHRYPLKSLPSNL--QLDKIVEFQMCYSHIEELWK-GIKPLNTLKVMKLSHSENLIKTPN-FIEVPNLEVLDLK 495 (1051)
Q Consensus 420 ~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~L~ 495 (1051)
+++.|++.++.+..+|..+ .+++|++|++++|.+..++. .+..+++|++|+|++|.....+|. |+++++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 4566666666666665543 45555555555555555543 455555555555555543333332 4555555555555
Q ss_pred CCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEe
Q 048831 496 GCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYL 575 (1051)
Q Consensus 496 ~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L 575 (1051)
+| .+..+|..+ ++.+++|++|+|++|......|..+..+++|++|++
T Consensus 132 ~n-~l~~l~~~~--------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 132 RN-DLSSLPRGI--------------------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp SS-CCCCCCTTT--------------------------------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CC-CCCCCCHHH--------------------------------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence 53 233333322 234555555555555444444445555555555555
Q ss_pred cCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCC
Q 048831 576 DGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPP 655 (1051)
Q Consensus 576 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~ 655 (1051)
++|.+..++ ++.+++|+.|++++|... .+...++|+.|++++|... .++..+ .++|+.|++++|.+...
T Consensus 179 ~~N~l~~~~--~~~l~~L~~L~l~~n~l~-----~l~~~~~L~~L~ls~n~l~-~~~~~~--~~~L~~L~L~~n~l~~~- 247 (597)
T 3oja_B 179 SSNRLTHVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTDT- 247 (597)
T ss_dssp TTSCCSBCC--GGGCTTCSEEECCSSCCS-----EEECCTTCSEEECCSSCCC-EEECSC--CSCCCEEECCSSCCCCC-
T ss_pred cCCCCCCcC--hhhhhhhhhhhcccCccc-----cccCCchhheeeccCCccc-cccccc--CCCCCEEECCCCCCCCC-
Confidence 555555543 344555555555554321 1223345555555555432 222211 24555666665555542
Q ss_pred cccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcC
Q 048831 656 SSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSL 735 (1051)
Q Consensus 656 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L 735 (1051)
..+..+++|+.|++++|..... .|..+.++++|+.|+|++|.+.. +|..+..+++|
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L 303 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKI----------------------MYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTL 303 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEE----------------------ESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTC
T ss_pred hhhccCCCCCEEECCCCccCCC----------------------CHHHhcCccCCCEEECCCCCCCC--CCcccccCCCC
Confidence 4455556666666655543221 13335555566666666665543 44445555666
Q ss_pred cEEeccCCCceeccccccCCCCCCEEeccCCccccccC-CCCCCCceEeecCC
Q 048831 736 KELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQSLP-QLPPNVIKVSVNGC 787 (1051)
Q Consensus 736 ~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~~lp-~lp~~L~~L~i~~C 787 (1051)
+.|+|++|.++.+|..+..+++|+.|+|++|+ +..+| ...++|+.|++.++
T Consensus 304 ~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 304 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp CEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSS
T ss_pred cEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCEEEeeCC
Confidence 66666666666666555556666666666655 22222 22344555554443
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=5.7e-24 Score=243.46 Aligned_cols=301 Identities=20% Similarity=0.188 Sum_probs=200.6
Q ss_pred CCCCCcEEEecCccc---CCcccccCcCceEEEEcCCCCCCCCC-CC-CCCCeeEEEcCccCccccccc-ccCCCCCCEE
Q 048831 396 LMTNLRFLNIGNVQL---PEGLEYLSNKLRLLNWHRYPLKSLPS-NL-QLDKIVEFQMCYSHIEELWKG-IKPLNTLKVM 469 (1051)
Q Consensus 396 ~~~~Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L 469 (1051)
.+++++.|+++++.+ |.....-..+|++|++.++.+..+|. .+ .+.+|++|++++|.+..++.. +..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 368999999999874 44433334579999999999999886 45 899999999999999988654 7899999999
Q ss_pred ecCCCCCCCCCCC-CCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecE
Q 048831 470 KLSHSENLIKTPN-FIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRT 548 (1051)
Q Consensus 470 ~L~~~~~l~~~~~-~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~ 548 (1051)
++++|.....++. |.++++|++|++++|......+..+..+++|+.|+++++. +..+ .+..+++|++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~----------l~~~--~~~~l~~L~~ 190 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----------LTHV--DLSLIPSLFH 190 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC----------CSBC--CGGGCTTCSE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc----------CCcc--ccccccccce
Confidence 9999976644444 6899999999999975444344557777788888877642 1112 1334666777
Q ss_pred EeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCC
Q 048831 549 LKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKL 628 (1051)
Q Consensus 549 L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l 628 (1051)
|++++|... .+ ....+|++|++++|.+..+|... .++|+.|++++|.... . ..+..+++|+.|++++|...
T Consensus 191 L~l~~n~l~-~~----~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 191 ANVSYNLLS-TL----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp EECCSSCCS-EE----ECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC
T ss_pred eeccccccc-cc----CCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCC
Confidence 777765432 21 22345666666666666655432 3556666666654322 1 23455555555555555444
Q ss_pred CcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCC
Q 048831 629 ENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLC 708 (1051)
Q Consensus 629 ~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~ 708 (1051)
...|..+..+++|++|++++|.+..+| ..+..++
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~----------------------------------------------~~~~~l~ 295 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLVALN----------------------------------------------LYGQPIP 295 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCCEEE----------------------------------------------CSSSCCT
T ss_pred CcChhHccccccCCEEECCCCcCcccC----------------------------------------------cccCCCC
Confidence 444444555555555555554443332 2344566
Q ss_pred CCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCc
Q 048831 709 SLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 709 ~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
+|+.|+|++|++.. +|..+..+++|+.|+|++|.++.+| +..+++|+.|++++|+
T Consensus 296 ~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 296 TLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp TCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCEEECCCCccee--cCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCC
Confidence 77777777777653 5666677777888888887777775 6677778888887776
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.7e-23 Score=252.93 Aligned_cols=300 Identities=20% Similarity=0.194 Sum_probs=205.4
Q ss_pred CCCCcEEEecCccc---CCcccccCcCceEEEEcCCCCCCCCC-CC-CCCCeeEEEcCccCccccccc-ccCCCCCCEEe
Q 048831 397 MTNLRFLNIGNVQL---PEGLEYLSNKLRLLNWHRYPLKSLPS-NL-QLDKIVEFQMCYSHIEELWKG-IKPLNTLKVMK 470 (1051)
Q Consensus 397 ~~~Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~ 470 (1051)
+.+++.|+++++.+ |..+..-..+|++|+++++.+..+|. .| .+.+|++|++++|.+..++.. +..+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 57889999998864 44433334579999999999998886 45 899999999999999988765 68999999999
Q ss_pred cCCCCCCCCCCC-CCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEE
Q 048831 471 LSHSENLIKTPN-FIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTL 549 (1051)
Q Consensus 471 L~~~~~l~~~~~-~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L 549 (1051)
|++|.....++. |+++++|++|+|++|......|..+..+++|+.|+++++. + ..++ ++.+++|++|
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l---------~~~~--~~~l~~L~~L 197 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-L---------THVD--LSLIPSLFHA 197 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-C---------SBCC--GGGCTTCSEE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-C---------CCcC--hhhhhhhhhh
Confidence 999976655554 6899999999999976554455578888888888888752 2 2222 3447778888
Q ss_pred eeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCC
Q 048831 550 KLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLE 629 (1051)
Q Consensus 550 ~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~ 629 (1051)
++++|... . +....+|+.|++++|.+..+|..+. ++|+.|++++|.... +..+..+++|+.|+|++|....
T Consensus 198 ~l~~n~l~-~----l~~~~~L~~L~ls~n~l~~~~~~~~--~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 198 NVSYNLLS-T----LAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp ECCSSCCS-E----EECCTTCSEEECCSSCCCEEECSCC--SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred hcccCccc-c----ccCCchhheeeccCCcccccccccC--CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 88876432 2 2334567777777777776665432 567777777765433 2456666666666666666555
Q ss_pred cCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCC
Q 048831 630 NVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCS 709 (1051)
Q Consensus 630 ~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~ 709 (1051)
..|..++.+++|+.|++++|.+..+|.. +..+++
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----------------------------------------------~~~l~~ 302 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVALNLY----------------------------------------------GQPIPT 302 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCEEECS----------------------------------------------SSCCTT
T ss_pred CCHHHhcCccCCCEEECCCCCCCCCCcc----------------------------------------------cccCCC
Confidence 5566666666666666666655544433 344555
Q ss_pred CCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCc
Q 048831 710 LSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 710 L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
|+.|+|++|.+. .+|..+..+++|+.|+|++|.++.+| +..+++|+.|++++|+
T Consensus 303 L~~L~Ls~N~l~--~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 303 LKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CcEEECCCCCCC--ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCC
Confidence 666666666554 25555566666666666666666554 4556666666666665
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2.5e-23 Score=241.63 Aligned_cols=308 Identities=19% Similarity=0.151 Sum_probs=236.9
Q ss_pred hhcCCCCCcEEEecCcccCC--cccccCcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEe
Q 048831 393 AFSLMTNLRFLNIGNVQLPE--GLEYLSNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMK 470 (1051)
Q Consensus 393 ~f~~~~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~ 470 (1051)
.+..+++|+.|+++++.+.+ ++..+ .+|++|++++|.++.+| ...+.+|++|++++|.+..++ +..+++|++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred ChhHcCCCCEEEccCCCcccChhhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 45678899999999988654 23333 47999999999999987 337899999999999999885 88899999999
Q ss_pred cCCCCCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEe
Q 048831 471 LSHSENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLK 550 (1051)
Q Consensus 471 L~~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~ 550 (1051)
+++|.... ++ ++.+++|++|++++|. +..++ ++.+++|+.|++++|..+..++ +..+++|++|+
T Consensus 113 L~~N~l~~-l~-~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~~-----------~~~l~~L~~L~ 176 (457)
T 3bz5_A 113 CDTNKLTK-LD-VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKLD-----------VTPQTQLTTLD 176 (457)
T ss_dssp CCSSCCSC-CC-CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCCC-----------CTTCTTCCEEE
T ss_pred CCCCcCCe-ec-CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCcccccc-----------cccCCcCCEEE
Confidence 99996544 44 8899999999999864 44553 7889999999999986655442 44588999999
Q ss_pred eeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCc
Q 048831 551 LSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLEN 630 (1051)
Q Consensus 551 Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~ 630 (1051)
+++|.. ..+| +..+++|+.|++++|.++.++ ++.+++|+.|++++|.... +| +..+++|+.|++++|....
T Consensus 177 ls~n~l-~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~- 247 (457)
T 3bz5_A 177 CSFNKI-TELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE- 247 (457)
T ss_dssp CCSSCC-CCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-
T ss_pred CCCCcc-ceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-
Confidence 999864 4466 788999999999999999874 8889999999999987554 66 8889999999999986554
Q ss_pred CCcccCCCCCccEEEccCCCCcCCCc---------ccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccC
Q 048831 631 VPDTLGQVESLEELDISGTATRRPPS---------SIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALML 701 (1051)
Q Consensus 631 lp~~l~~l~~L~~L~l~~~~~~~~~~---------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 701 (1051)
+| ++.+++|+.|+++++.+..+.- ....+++|+.|++++|......+... .... .
T Consensus 248 ~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~------------~~L~--~ 311 (457)
T 3bz5_A 248 LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA------------AGIT--E 311 (457)
T ss_dssp CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTT------------CCCS--C
T ss_pred cC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCC------------Ccce--E
Confidence 33 4556666666666555443311 14567999999999998655433211 0011 1
Q ss_pred CCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceecc
Q 048831 702 PSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLP 749 (1051)
Q Consensus 702 ~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 749 (1051)
-.++++++|+.|++++|++.. + .++.+++|+.|++++|.++.+|
T Consensus 312 L~l~~~~~L~~L~L~~N~l~~--l--~l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 312 LDLSQNPKLVYLYLNNTELTE--L--DVSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSC--C--CCTTCTTCSEEECCSSCCCBCT
T ss_pred echhhcccCCEEECCCCcccc--c--ccccCCcCcEEECCCCCCCCcc
Confidence 126777899999999999975 3 3889999999999999988754
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=9.4e-23 Score=227.58 Aligned_cols=239 Identities=20% Similarity=0.245 Sum_probs=143.2
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccc-cccCCCCCCEEecCCCCCCCCCC-CCCCCCccCEEEeeCC
Q 048831 420 KLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWK-GIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLKGC 497 (1051)
Q Consensus 420 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~L~~c 497 (1051)
+++.++++++.++.+|..+. +++++|++++|.+..++. .+..+++|++|++++|......| .+.++++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 46777777777777776553 567777777777777665 46677777777777776554433 3667777777777764
Q ss_pred CCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCc-cccccCceecEEeeeCCCCCC--cCchhhCCCCCCCEEE
Q 048831 498 TSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLP-VTISSLKCLRTLKLSGCSKLK--KFPAIVASMEDLSELY 574 (1051)
Q Consensus 498 ~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~~~--~~p~~~~~l~~L~~L~ 574 (1051)
. +..+|..+. ++|+.|+++++. +..++ ..+..+++|++|++++|.... ..+..+..+++|++|+
T Consensus 111 ~-l~~l~~~~~--~~L~~L~l~~n~----------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 111 Q-LKELPEKMP--KTLQELRVHENE----------ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp C-CSBCCSSCC--TTCCEEECCSSC----------CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred c-CCccChhhc--ccccEEECCCCc----------ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 3 445554433 456666665531 22222 234556666666666655432 3445556666666666
Q ss_pred ecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCC
Q 048831 575 LDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRP 654 (1051)
Q Consensus 575 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 654 (1051)
+++|.++.+|..+. ++|+.|++++|......|..+..+++|+.|++++|......+..+..+++|++|++++|.+..+
T Consensus 178 l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 255 (330)
T 1xku_A 178 IADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255 (330)
T ss_dssp CCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC
T ss_pred CCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC
Confidence 66666666655443 5666666666654444455566666666666666654444444555666666666666666666
Q ss_pred CcccccccCCcEEEccCCCC
Q 048831 655 PSSIFLMKNLKTLSFSGCNG 674 (1051)
Q Consensus 655 ~~~l~~l~~L~~L~l~~~~~ 674 (1051)
|.++..+++|+.|++++|..
T Consensus 256 p~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCC
T ss_pred ChhhccCCCcCEEECCCCcC
Confidence 65555566666666655543
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=1.6e-22 Score=247.88 Aligned_cols=387 Identities=18% Similarity=0.152 Sum_probs=252.4
Q ss_pred CCCcEEEecCcccCC----cccccCcCceEEEEcCCCCCCCCCC-C-CCCCeeEEEcCccCccccccc-ccCCCCCCEEe
Q 048831 398 TNLRFLNIGNVQLPE----GLEYLSNKLRLLNWHRYPLKSLPSN-L-QLDKIVEFQMCYSHIEELWKG-IKPLNTLKVMK 470 (1051)
Q Consensus 398 ~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~ 470 (1051)
.+++.|++++|.+.. .+..+ .+|++|++++|.++.+|+. | .+.+|++|++++|+++.++.+ +..+++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 479999999998643 34344 4799999999999999875 5 799999999999999999875 78999999999
Q ss_pred cCCCCCCCCCCC-CCCCCccCEEEeeCCCCC-hhhhhhhccCCCCcEEecCCCCCCCccCC-------------------
Q 048831 471 LSHSENLIKTPN-FIEVPNLEVLDLKGCTSL-REIHSSLLRHNKLILLNLKGCTSLTTLPD------------------- 529 (1051)
Q Consensus 471 L~~~~~l~~~~~-~~~l~~L~~L~L~~c~~l-~~l~~si~~l~~L~~L~L~~c~~l~~l~~------------------- 529 (1051)
+++|......+. |+++++|++|+|++|... ..+|..+..+++|++|+++++. ++.++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEECT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhhhcc
Confidence 999976554443 899999999999997532 2467888999999999999864 222211
Q ss_pred CCCCCCCccccccCceecEEeeeCCCCCC---------------------------------------------------
Q 048831 530 CKNLSSLPVTISSLKCLRTLKLSGCSKLK--------------------------------------------------- 558 (1051)
Q Consensus 530 ~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~--------------------------------------------------- 558 (1051)
...+..++........++.|++.++....
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 01112222222222222233322211000
Q ss_pred -------cC----------------------chhhCCCCCCCEEEecCccCcccC--------------------ccccC
Q 048831 559 -------KF----------------------PAIVASMEDLSELYLDGTYITEVP--------------------SSIEL 589 (1051)
Q Consensus 559 -------~~----------------------p~~~~~l~~L~~L~L~~~~i~~lp--------------------~~i~~ 589 (1051)
.. ...+....+|+.|++.++.+..++ .....
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 369 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 369 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCB
T ss_pred hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccc
Confidence 00 001122345566666555443322 12235
Q ss_pred CCCCCEEecCCCCCC--CcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCC--CcccccccCCc
Q 048831 590 LTGLELLNLNDCKNL--VRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRP--PSSIFLMKNLK 665 (1051)
Q Consensus 590 l~~L~~L~L~~~~~l--~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~ 665 (1051)
+++|+.|++++|... ...+.....+.+|+.|++..+... .++..+..+++|+.+++..+..... +..+..+++|+
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccc
Confidence 678888888876543 223444556677777777765432 3344556667777777766654333 22345566677
Q ss_pred EEEccCCCCCCCCCcc-cCCccccccccCCCC--ccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccC
Q 048831 666 TLSFSGCNGPPSTASC-HLNLPFNLMRKSSCP--VALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSG 742 (1051)
Q Consensus 666 ~L~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~--~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~ 742 (1051)
.++++.|......+.. .....+..+.+.++. ....+..+..+++|+.|+|++|++. +..|..+.++++|++|+|++
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~-~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTT
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC-CcChHHHcCCCCCCEEECCC
Confidence 7777666543322111 111223333443332 1234567889999999999999986 45577889999999999999
Q ss_pred CCceeccc-cccCCCCCCEEeccCCccccccCC----CCCCCceEeecCCc
Q 048831 743 NNFVTLPA-SISGLFNLKYLELEDCKRLQSLPQ----LPPNVIKVSVNGCA 788 (1051)
Q Consensus 743 n~l~~lp~-~~~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~i~~C~ 788 (1051)
|+++.+|. .+..+++|+.|+|++|+.....|+ +|++|+.|++.+.+
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99998865 578999999999999975444343 56788888887654
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=1.2e-22 Score=227.00 Aligned_cols=283 Identities=18% Similarity=0.242 Sum_probs=132.4
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccc-cccCCCCCCEEecCCCCCCCCCC-CCCCCCccCEEEeeCC
Q 048831 420 KLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWK-GIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLKGC 497 (1051)
Q Consensus 420 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~L~~c 497 (1051)
+++.++++++.++.+|..+ .++|++|++++|.+..++. .+..+++|++|++++|......| .+.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4667777777777776655 3566666666666666543 45566666666666654433323 2555555555555553
Q ss_pred CCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecC
Q 048831 498 TSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDG 577 (1051)
Q Consensus 498 ~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~ 577 (1051)
.+..+|..+. ++|++|+ +++|......+..+..+++|++|++++
T Consensus 113 -~l~~l~~~~~--~~L~~L~---------------------------------l~~n~i~~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 113 -HLVEIPPNLP--SSLVELR---------------------------------IHDNRIRKVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp -CCCSCCSSCC--TTCCEEE---------------------------------CCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred -cCCccCcccc--ccCCEEE---------------------------------CCCCccCccCHhHhCCCccCCEEECCC
Confidence 2334443332 3444444 444433322223344444444444444
Q ss_pred ccCcc---cCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCC
Q 048831 578 TYITE---VPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRP 654 (1051)
Q Consensus 578 ~~i~~---lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 654 (1051)
|.++. .|..+..+ +|+.|++++|. +..+|..+. ++|+.|++++|......+..+..+++|+.|++++|.+..+
T Consensus 157 n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 157 NPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp CCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred CccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 44431 22233333 44444444443 222333222 3444444444443333334444444455555554444444
Q ss_pred Cc-ccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccC--
Q 048831 655 PS-SIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICN-- 731 (1051)
Q Consensus 655 ~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~-- 731 (1051)
+. .+..+++|+.|++++|.... +|..+..+++|+.|++++|++... .+..+..
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~~-----------------------lp~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~ 288 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLSR-----------------------VPAGLPDLKLLQVVYLHTNNITKV-GVNDFCPVG 288 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCB-----------------------CCTTGGGCTTCCEEECCSSCCCBC-CTTSSSCSS
T ss_pred ChhHhhCCCCCCEEECCCCcCee-----------------------cChhhhcCccCCEEECCCCCCCcc-ChhHccccc
Confidence 32 34444444444444443221 123344444555555555544321 1111111
Q ss_pred ----CCcCcEEeccCCCce--e-ccccccCCCCCCEEeccCCc
Q 048831 732 ----LHSLKELYLSGNNFV--T-LPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 732 ----l~~L~~L~L~~n~l~--~-lp~~~~~l~~L~~L~l~~c~ 767 (1051)
.++|+.|++++|.+. . .|..+..+++|+.|++++|+
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 345666666666554 2 23445666666666666654
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=8.2e-23 Score=228.18 Aligned_cols=293 Identities=15% Similarity=0.167 Sum_probs=214.0
Q ss_pred CCCcEEEecCcccCCcccccCcCceEEEEcCCCCCCCCC-CC-CCCCeeEEEcCccCcccc-cccccCCCCCCEEecCCC
Q 048831 398 TNLRFLNIGNVQLPEGLEYLSNKLRLLNWHRYPLKSLPS-NL-QLDKIVEFQMCYSHIEEL-WKGIKPLNTLKVMKLSHS 474 (1051)
Q Consensus 398 ~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~L~~~ 474 (1051)
.+++.++++++.+......++.++++|+++++.++.++. .+ .+.+|++|++++|.+..+ +..+..+++|++|++++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 478999999988765555566789999999999999976 45 899999999999999988 667999999999999999
Q ss_pred CCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCC
Q 048831 475 ENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGC 554 (1051)
Q Consensus 475 ~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c 554 (1051)
.....++.+. ++|++|++++|. +..++.. .+..+++|++|++++|
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~--------------------------------~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNR-IRKVPKG--------------------------------VFSGLRNMNCIEMGGN 157 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSC-CCCCCSG--------------------------------GGSSCSSCCEEECCSC
T ss_pred cCCccCcccc--ccCCEEECCCCc-cCccCHh--------------------------------HhCCCccCCEEECCCC
Confidence 7653333343 899999999864 3333321 2334555666666665
Q ss_pred CCC--CcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCC
Q 048831 555 SKL--KKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVP 632 (1051)
Q Consensus 555 ~~~--~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp 632 (1051)
... ...|..+..+ +|++|++++|.++.+|..+. ++|+.|++++|......|..+..+++|+.|++++|......+
T Consensus 158 ~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 158 PLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp CCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred ccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 442 2345555555 77888888888887776654 678888888887666666778888888888888887666666
Q ss_pred cccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCE
Q 048831 633 DTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSK 712 (1051)
Q Consensus 633 ~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~ 712 (1051)
..+..+++|++|++++|.+..+|..+..+++|+.|++++|............ .......++|+.
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~----------------~~~~~~~~~l~~ 298 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP----------------VGFGVKRAYYNG 298 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC----------------SSCCSSSCCBSE
T ss_pred hHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccc----------------cccccccccccc
Confidence 6788888999999999988888888888999999999888754321110000 000122568999
Q ss_pred EeccCCCCCCc-cccccccCCCcCcEEeccCCC
Q 048831 713 LDLSDCGLREG-AILSDICNLHSLKELYLSGNN 744 (1051)
Q Consensus 713 L~L~~~~l~~~-~~~~~l~~l~~L~~L~L~~n~ 744 (1051)
|++++|.+... ..+..+..+++|+.|++++|+
T Consensus 299 L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eEeecCcccccccCcccccccchhhhhhccccc
Confidence 99999988633 345668889999999999874
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=2.9e-22 Score=223.67 Aligned_cols=286 Identities=16% Similarity=0.166 Sum_probs=215.8
Q ss_pred CCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCCC-CCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecC
Q 048831 441 DKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLK 519 (1051)
Q Consensus 441 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~ 519 (1051)
.+++.++++++.+..+|..+. ++|++|++++|......+ .|.++++|++|+|++|......|..+..+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 468899999999999987664 689999999997655555 48999999999999976444447889999999999998
Q ss_pred CCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcc---cCccccCCCCCCEE
Q 048831 520 GCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITE---VPSSIELLTGLELL 596 (1051)
Q Consensus 520 ~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L 596 (1051)
++. + ..+|..+ .++|++|++++|......+..+..+++|++|++++|.+.. .+..+..+++|+.|
T Consensus 109 ~n~-l---------~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 109 KNQ-L---------KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp SSC-C---------SBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCc-C---------CccChhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 843 3 3344443 3789999999987776667778999999999999998863 45678889999999
Q ss_pred ecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCc-ccccccCCcEEEccCCCCC
Q 048831 597 NLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPS-SIFLMKNLKTLSFSGCNGP 675 (1051)
Q Consensus 597 ~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~ 675 (1051)
++++|. +..+|..+. ++|++|++++|......|..+..+++|+.|++++|.+..++. .+..+++|+.|++++|...
T Consensus 177 ~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 177 RIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp ECCSSC-CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred ECCCCc-cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 999876 445665543 789999999987666667788888999999999998877654 6778888888888887644
Q ss_pred CCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCcccccccc------CCCcCcEEeccCCCcee--
Q 048831 676 PSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDIC------NLHSLKELYLSGNNFVT-- 747 (1051)
Q Consensus 676 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~------~l~~L~~L~L~~n~l~~-- 747 (1051)
. +|..+..+++|+.|++++|++... .+..+. ..++|+.|++++|.+..
T Consensus 254 ~-----------------------lp~~l~~l~~L~~L~l~~N~i~~~-~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 254 K-----------------------VPGGLADHKYIQVVYLHNNNISAI-GSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp S-----------------------CCTTTTTCSSCCEEECCSSCCCCC-CTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred c-----------------------CChhhccCCCcCEEECCCCcCCcc-ChhhcCCcccccccccccceEeecCcccccc
Confidence 2 255577788888888888887642 122222 24678888888887763
Q ss_pred -ccccccCCCCCCEEeccCCc
Q 048831 748 -LPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 748 -lp~~~~~l~~L~~L~l~~c~ 767 (1051)
.|..+..+++|+.+++++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 34566777888888887763
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=3e-22 Score=245.30 Aligned_cols=385 Identities=21% Similarity=0.198 Sum_probs=227.4
Q ss_pred ccccceeeechhhhcCCCCCcEEEecCcccC---Cc-ccccCcCceEEEEcCCCCCCCCCC-C-CCCCeeEEEcCccCcc
Q 048831 381 FFLKNEVRLSAKAFSLMTNLRFLNIGNVQLP---EG-LEYLSNKLRLLNWHRYPLKSLPSN-L-QLDKIVEFQMCYSHIE 454 (1051)
Q Consensus 381 ~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~---~~-~~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~ 454 (1051)
++......+.+.+|.++++|++|++++|++. .+ +..+ .+|++|++++|.++.+|.. | .+.+|++|++++|++.
T Consensus 59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~ 137 (635)
T 4g8a_A 59 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred eeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCC-CCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence 4455555677889999999999999999863 32 3333 4799999999999999975 4 7999999999999999
Q ss_pred ccccc-ccCCCCCCEEecCCCCCCC-CCC-CCCCCCccCEEEeeCCCCChhhhhhhccCCC-------------------
Q 048831 455 ELWKG-IKPLNTLKVMKLSHSENLI-KTP-NFIEVPNLEVLDLKGCTSLREIHSSLLRHNK------------------- 512 (1051)
Q Consensus 455 ~l~~~-~~~l~~L~~L~L~~~~~l~-~~~-~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~------------------- 512 (1051)
.++.. +..+++|++|++++|.... ..| .+..+++|++|++++|..-.-.+..+..+.+
T Consensus 138 ~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~ 217 (635)
T 4g8a_A 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 217 (635)
T ss_dssp CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccC
Confidence 99875 8899999999999997543 234 3778999999999986432222222221111
Q ss_pred --------CcEEecCCCC---------------------------CCCccCCC---------------------------
Q 048831 513 --------LILLNLKGCT---------------------------SLTTLPDC--------------------------- 530 (1051)
Q Consensus 513 --------L~~L~L~~c~---------------------------~l~~l~~~--------------------------- 530 (1051)
+..+++.+.. ....+...
T Consensus 218 ~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 297 (635)
T 4g8a_A 218 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDG 297 (635)
T ss_dssp TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEE
T ss_pred cccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccc
Confidence 1111111110 00000000
Q ss_pred --------CCCCCC---------ccccccCceecEEeeeCCCCCC-------------------cCchhhCCCCCCCEEE
Q 048831 531 --------KNLSSL---------PVTISSLKCLRTLKLSGCSKLK-------------------KFPAIVASMEDLSELY 574 (1051)
Q Consensus 531 --------~~l~~l---------p~~l~~l~~L~~L~Ls~c~~~~-------------------~~p~~~~~l~~L~~L~ 574 (1051)
..+..+ ...+....+|+.|++.+|.... ..+.....+++|+.|+
T Consensus 298 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ 377 (635)
T 4g8a_A 298 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 377 (635)
T ss_dssp CTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEE
T ss_pred hhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccch
Confidence 000000 0112223455666665543111 0112234567777777
Q ss_pred ecCccCcc---cCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCC-cccCCCCCccEEEccCCC
Q 048831 575 LDGTYITE---VPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDISGTA 650 (1051)
Q Consensus 575 L~~~~i~~---lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~ 650 (1051)
++.|.+.. .+.....+.+|+.|++..+.. ..++..+..+++|+.+++.++......+ ..+..+++++.++++.|.
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSE-EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred hhccccccccccccchhhhhhhhhhhcccccc-ccccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence 77776652 233445556666666655432 2233334445555555555444333222 223444445555555444
Q ss_pred CcCC-CcccccccCCcEEEccCCCCCCCCCc--ccCCccccccccCCCCcccc-CCCCCCCCCCCEEeccCCCCCCcccc
Q 048831 651 TRRP-PSSIFLMKNLKTLSFSGCNGPPSTAS--CHLNLPFNLMRKSSCPVALM-LPSLSGLCSLSKLDLSDCGLREGAIL 726 (1051)
Q Consensus 651 ~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~ 726 (1051)
+... +..+..+++|+.|++++|........ ......+..+.+.++....+ +..+.++++|+.|+|++|++.. ..+
T Consensus 457 l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~ 535 (635)
T 4g8a_A 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDT 535 (635)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB-CCC
T ss_pred cccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC-CCh
Confidence 4333 22333344444454444432111000 00111223333333333333 4568999999999999999963 446
Q ss_pred ccccCCCcCcEEeccCCCceecc-ccccCC-CCCCEEeccCCcc
Q 048831 727 SDICNLHSLKELYLSGNNFVTLP-ASISGL-FNLKYLELEDCKR 768 (1051)
Q Consensus 727 ~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l-~~L~~L~l~~c~~ 768 (1051)
..+..+++|+.|+|++|+++.++ ..+..+ ++|+.|+|++|+.
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 67899999999999999999875 466777 6899999999983
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=1.3e-23 Score=231.93 Aligned_cols=252 Identities=21% Similarity=0.263 Sum_probs=185.8
Q ss_pred ccCEEEeeCCCCCh--hhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhC
Q 048831 488 NLEVLDLKGCTSLR--EIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVA 565 (1051)
Q Consensus 488 ~L~~L~L~~c~~l~--~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~ 565 (1051)
+++.|+|+++.... .+|..+..+++|++|+++++..+. ..+|..++++++|++|+|++|...+.+|..+.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~--------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV--------GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE--------SCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc--------ccCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 45555555544333 455566666666666665321111 23455667778888888888776667788888
Q ss_pred CCCCCCEEEecCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCC-CCCEEeccCCCCCCcCCcccCCCCCccE
Q 048831 566 SMEDLSELYLDGTYIT-EVPSSIELLTGLELLNLNDCKNLVRLPNSINGLK-SLKTLNLSGCCKLENVPDTLGQVESLEE 643 (1051)
Q Consensus 566 ~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~-~L~~L~L~~c~~l~~lp~~l~~l~~L~~ 643 (1051)
.+++|++|++++|.+. .+|..+..+++|++|++++|...+.+|..+..++ +|+.|++++|.....+|..+..+. |+.
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 8888888888888887 6777788888888888888876667788888887 888888888877767787777776 888
Q ss_pred EEccCCCCcC-CCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCC
Q 048831 644 LDISGTATRR-PPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLRE 722 (1051)
Q Consensus 644 L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~ 722 (1051)
|++++|.+.. .|..+..+++|+.|++++|..... ++.+..+++|++|+|++|.+.
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------------~~~~~~l~~L~~L~Ls~N~l~- 257 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-----------------------LGKVGLSKNLNGLDLRNNRIY- 257 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-----------------------GGGCCCCTTCCEEECCSSCCE-
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeee-----------------------cCcccccCCCCEEECcCCccc-
Confidence 8888888664 455677788888888888764322 333667788999999999885
Q ss_pred ccccccccCCCcCcEEeccCCCce-eccccccCCCCCCEEeccCCccccccC
Q 048831 723 GAILSDICNLHSLKELYLSGNNFV-TLPASISGLFNLKYLELEDCKRLQSLP 773 (1051)
Q Consensus 723 ~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~c~~L~~lp 773 (1051)
+.+|..+..+++|+.|+|++|+++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 457888889999999999999988 56654 888999999999998776544
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.4e-22 Score=224.98 Aligned_cols=221 Identities=23% Similarity=0.370 Sum_probs=182.1
Q ss_pred CCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCC
Q 048831 511 NKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELL 590 (1051)
Q Consensus 511 ~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 590 (1051)
.+++.|++++ ..+..+|..++++++|++|+|++|... .+|..++.+++|++|++++|.+..+|..++++
T Consensus 81 ~~l~~L~L~~----------n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l 149 (328)
T 4fcg_A 81 PGRVALELRS----------VPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASL 149 (328)
T ss_dssp TTCCEEEEES----------SCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred cceeEEEccC----------CCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcC
Confidence 4555566655 234456666777888888888887655 78888888888888999888888888888899
Q ss_pred CCCCEEecCCCCCCCcccccccC---------CCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccc
Q 048831 591 TGLELLNLNDCKNLVRLPNSING---------LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLM 661 (1051)
Q Consensus 591 ~~L~~L~L~~~~~l~~lp~~i~~---------L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l 661 (1051)
++|++|++++|...+.+|..+.. +++|++|++++|... .+|..++.+++|++|++++|.+..+|..+..+
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence 99999999988888888877654 899999999998654 88888999999999999999999999889999
Q ss_pred cCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEecc
Q 048831 662 KNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLS 741 (1051)
Q Consensus 662 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~ 741 (1051)
++|+.|++++|..... +|..+.++++|+.|+|++|++. +.+|..++.+++|+.|+|+
T Consensus 229 ~~L~~L~Ls~n~~~~~----------------------~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 229 PKLEELDLRGCTALRN----------------------YPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp TTCCEEECTTCTTCCB----------------------CCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECT
T ss_pred CCCCEEECcCCcchhh----------------------hHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCC
Confidence 9999999999876543 2566788899999999999875 4678888999999999999
Q ss_pred CCCce-eccccccCCCCCCEEeccCC
Q 048831 742 GNNFV-TLPASISGLFNLKYLELEDC 766 (1051)
Q Consensus 742 ~n~l~-~lp~~~~~l~~L~~L~l~~c 766 (1051)
+|++. .+|..+.++++|+.+.+..+
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCchhhccHHHhhccCceEEeCCHH
Confidence 97754 78999999999999988754
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.3e-22 Score=225.35 Aligned_cols=229 Identities=22% Similarity=0.337 Sum_probs=170.2
Q ss_pred cCceEEEEcCCCCCCCCCCC-CCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCC
Q 048831 419 NKLRLLNWHRYPLKSLPSNL-QLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGC 497 (1051)
Q Consensus 419 ~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c 497 (1051)
..++.|++.++.++.+|..+ .+.+|++|++++|.+..+|..+..+++|++|++++|.....++.+.++++|++|+|++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 35667777777766666655 56666666666666666555555555555555555543322223455555555555554
Q ss_pred CCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecC
Q 048831 498 TSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDG 577 (1051)
Q Consensus 498 ~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~ 577 (1051)
..+..+|..+.. ..++..+..+++|++|+|++|... .+|..++.+++|++|++++
T Consensus 161 ~~~~~~p~~~~~------------------------~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 161 PELTELPEPLAS------------------------TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN 215 (328)
T ss_dssp TTCCCCCSCSEE------------------------EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEES
T ss_pred CCccccChhHhh------------------------ccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccC
Confidence 444444433221 112233556889999999998644 8888899999999999999
Q ss_pred ccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCC-CcCCCc
Q 048831 578 TYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTA-TRRPPS 656 (1051)
Q Consensus 578 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~-~~~~~~ 656 (1051)
|.+..+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..++.+++|++|++++|. ...+|.
T Consensus 216 N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 216 SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp SCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999977 567899
Q ss_pred ccccccCCcEEEccCC
Q 048831 657 SIFLMKNLKTLSFSGC 672 (1051)
Q Consensus 657 ~l~~l~~L~~L~l~~~ 672 (1051)
.+..+++|+.+.+..+
T Consensus 296 ~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 296 LIAQLPANCIILVPPH 311 (328)
T ss_dssp GGGGSCTTCEEECCGG
T ss_pred HHhhccCceEEeCCHH
Confidence 9999999999988754
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=3.4e-23 Score=228.70 Aligned_cols=246 Identities=17% Similarity=0.206 Sum_probs=152.7
Q ss_pred CCeeEEEcCccCcc---cccccccCCCCCCEEecCC-CCCCCCCC-CCCCCCccCEEEeeCCCCChhhhhhhccCCCCcE
Q 048831 441 DKIVEFQMCYSHIE---ELWKGIKPLNTLKVMKLSH-SENLIKTP-NFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLIL 515 (1051)
Q Consensus 441 ~~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~L~~-~~~l~~~~-~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~ 515 (1051)
.+++.|+++++.+. .+|..+..+++|++|++++ +.....+| .+.++++|++|+|++|.....+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----------- 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----------- 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-----------
Confidence 45666666666665 3555555666666666653 43332333 25555555555555543322334
Q ss_pred EecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCc-ccCccccCCC-CC
Q 048831 516 LNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYIT-EVPSSIELLT-GL 593 (1051)
Q Consensus 516 L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~-~L 593 (1051)
..+..+++|++|++++|...+.+|..+..+++|++|++++|.+. .+|..+..++ +|
T Consensus 119 ----------------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 119 ----------------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176 (313)
T ss_dssp ----------------------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred ----------------------HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence 34445555666666665555556666666666666666666666 5666666665 66
Q ss_pred CEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCC
Q 048831 594 ELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCN 673 (1051)
Q Consensus 594 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 673 (1051)
+.|++++|...+.+|..+..++ |+.|++++|......|..+..+++|+.|++++|.+...+..+..+++|++|++++|.
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred cEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 6666666665556666666665 677777666655556666667777777777777666555556666777777777765
Q ss_pred CCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCC
Q 048831 674 GPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNN 744 (1051)
Q Consensus 674 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~ 744 (1051)
.... +|..+..+++|+.|+|++|++. +.+|.. ..+++|+.|++++|.
T Consensus 256 l~~~----------------------~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 256 IYGT----------------------LPQGLTQLKFLHSLNVSFNNLC-GEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CEEC----------------------CCGGGGGCTTCCEEECCSSEEE-EECCCS-TTGGGSCGGGTCSSS
T ss_pred ccCc----------------------CChHHhcCcCCCEEECcCCccc-ccCCCC-ccccccChHHhcCCC
Confidence 4322 1445667778888888888775 345554 778888888888886
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=8.3e-24 Score=248.27 Aligned_cols=366 Identities=17% Similarity=0.169 Sum_probs=227.5
Q ss_pred CCcEEEecCcccCCcc----cccCcCceEEEEcCCCCC-----CCCCCC-CCCCeeEEEcCccCcccc-ccc-ccCCC--
Q 048831 399 NLRFLNIGNVQLPEGL----EYLSNKLRLLNWHRYPLK-----SLPSNL-QLDKIVEFQMCYSHIEEL-WKG-IKPLN-- 464 (1051)
Q Consensus 399 ~Lr~L~l~~~~l~~~~----~~l~~~Lr~L~l~~~~l~-----~lp~~~-~~~~L~~L~l~~~~i~~l-~~~-~~~l~-- 464 (1051)
+|+.|+++++.+.... .....+|++|+++++.+. .++..+ .+++|++|++++|.+... +.. ...++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4566666666553211 111235677777776665 334444 567788888888777542 111 22233
Q ss_pred --CCCEEecCCCCCCC----CCC-CCCCCCccCEEEeeCCCCChhhhhhhc-----cCCCCcEEecCCCCCCCccCCCCC
Q 048831 465 --TLKVMKLSHSENLI----KTP-NFIEVPNLEVLDLKGCTSLREIHSSLL-----RHNKLILLNLKGCTSLTTLPDCKN 532 (1051)
Q Consensus 465 --~L~~L~L~~~~~l~----~~~-~~~~l~~L~~L~L~~c~~l~~l~~si~-----~l~~L~~L~L~~c~~l~~l~~~~~ 532 (1051)
+|++|++++|.... .++ .+..+++|++|+|++|......+..+. ...+|+.|++++|. +.. ..
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~----~~ 158 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSA----AS 158 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBG----GG
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCH----HH
Confidence 68888888886442 122 367788888888888763222222222 24578888888762 211 11
Q ss_pred CCCCccccccCceecEEeeeCCCCCCcCchhhC-----CCCCCCEEEecCccCcc-----cCccccCCCCCCEEecCCCC
Q 048831 533 LSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVA-----SMEDLSELYLDGTYITE-----VPSSIELLTGLELLNLNDCK 602 (1051)
Q Consensus 533 l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~-----~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~ 602 (1051)
...++..+..+++|++|++++|......+..+. .+++|++|++++|.++. ++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 123455566678888888888764433232222 35688888888888875 56777788888888888875
Q ss_pred CCCc----c-cccccCCCCCCEEeccCCCCCCc----CCcccCCCCCccEEEccCCCCcCCC-ccccc-----ccCCcEE
Q 048831 603 NLVR----L-PNSINGLKSLKTLNLSGCCKLEN----VPDTLGQVESLEELDISGTATRRPP-SSIFL-----MKNLKTL 667 (1051)
Q Consensus 603 ~l~~----l-p~~i~~L~~L~~L~L~~c~~l~~----lp~~l~~l~~L~~L~l~~~~~~~~~-~~l~~-----l~~L~~L 667 (1051)
.... + +.....+++|++|++++|..... ++..+..+++|++|++++|.+.... ..+.. .++|+.|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 4322 1 22233578888888888855432 5666777888888888888765321 12222 2688888
Q ss_pred EccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCcccc---ccccC-CCcCcEEeccCC
Q 048831 668 SFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAIL---SDICN-LHSLKELYLSGN 743 (1051)
Q Consensus 668 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~---~~l~~-l~~L~~L~L~~n 743 (1051)
++++|..... ....++..+..+++|+.|+|++|.+.+.... ..+.. .++|+.|+|++|
T Consensus 319 ~L~~n~l~~~------------------~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 319 WVKSCSFTAA------------------CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp ECTTSCCBGG------------------GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred EcCCCCCchH------------------HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 8888864321 0011233456678899999999987543222 12222 678999999999
Q ss_pred Cce-----eccccccCCCCCCEEeccCCcccc--------ccCCCCCCCceEeecCC
Q 048831 744 NFV-----TLPASISGLFNLKYLELEDCKRLQ--------SLPQLPPNVIKVSVNGC 787 (1051)
Q Consensus 744 ~l~-----~lp~~~~~l~~L~~L~l~~c~~L~--------~lp~lp~~L~~L~i~~C 787 (1051)
.++ .+|..+..+++|+.|++++|+.-. .+|.-..+|+.|.+.++
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 888 678888888999999999886321 13443456777776554
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=217.83 Aligned_cols=211 Identities=17% Similarity=0.188 Sum_probs=156.8
Q ss_pred cccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCc--cccCCCCCCEEecCCCCCCCcc-cccccCCCC
Q 048831 540 ISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPS--SIELLTGLELLNLNDCKNLVRL-PNSINGLKS 616 (1051)
Q Consensus 540 l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~ 616 (1051)
+..+++|++|++++|......+..+..+++|++|++++|.+..+|. .+..+++|++|++++|.....+ |..+.++++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 3345666666666654443333447777888888888888887776 5788888888888887555554 456888888
Q ss_pred CCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccc-cccCCcEEEccCCCCCCCCCcccCCccccccccCCC
Q 048831 617 LKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIF-LMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSC 695 (1051)
Q Consensus 617 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 695 (1051)
|++|++++|......|..++.+++|++|++++|.+..+|..+. .+++|+.|++++|.........
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------- 241 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE-------------- 241 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc--------------
Confidence 9999998887777778888888999999999988877766543 4789999999888754421100
Q ss_pred CccccCCCCCCCCCCCEEeccCCCCCCc---cccccccCCCcCcEEeccCCCceeccccc-cCCCCCCEEeccCCccc
Q 048831 696 PVALMLPSLSGLCSLSKLDLSDCGLREG---AILSDICNLHSLKELYLSGNNFVTLPASI-SGLFNLKYLELEDCKRL 769 (1051)
Q Consensus 696 ~~~~~~~~l~~l~~L~~L~L~~~~l~~~---~~~~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~l~~c~~L 769 (1051)
.........++.++++++.+.+. .+|..+..+++|+.|+|++|.++.+|..+ ..+++|+.|++++|+..
T Consensus 242 -----l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 242 -----LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -----cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 11133456788999999988643 36777889999999999999999999885 89999999999999743
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=4.5e-20 Score=220.38 Aligned_cols=257 Identities=25% Similarity=0.260 Sum_probs=142.6
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCC
Q 048831 420 KLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTS 499 (1051)
Q Consensus 420 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~ 499 (1051)
.++.|+++++.++.+|..+. ++|++|++++|.++.+|. .+++|++|+|++|.. ..+|. .+++|++|+|++| .
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N-~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV--LPPGLLELSIFSN-P 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC--CCTTCCEEEECSC-C
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC--CCCCCCEEECcCC-c
Confidence 35666666666666666554 567777777776666665 456677777777653 33444 5667777777664 3
Q ss_pred ChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCcc
Q 048831 500 LREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTY 579 (1051)
Q Consensus 500 l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~ 579 (1051)
+..+|. .+.+|+.|++++|. +.. +|.. +++|++|+|++|. +..+|. .+.+|+.|++++|.
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~-l~~---------lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQ-LTS---------LPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQ 172 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSC-CSC---------CCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC
T ss_pred CCCCCC---CCCCcCEEECCCCC-CCc---------CCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCC
Confidence 444443 44566666666531 222 2221 3667777777764 334443 24567777777777
Q ss_pred CcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccc
Q 048831 580 ITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIF 659 (1051)
Q Consensus 580 i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~ 659 (1051)
++.+| ..+++|+.|++++|.. ..+|.. +++|+.|++++|.. ..+|.. +++|+.|++++|.+..+| .
T Consensus 173 l~~l~---~~~~~L~~L~Ls~N~l-~~l~~~---~~~L~~L~L~~N~l-~~l~~~---~~~L~~L~Ls~N~L~~lp---~ 238 (622)
T 3g06_A 173 LTSLP---MLPSGLQELSVSDNQL-ASLPTL---PSELYKLWAYNNRL-TSLPAL---PSGLKELIVSGNRLTSLP---V 238 (622)
T ss_dssp CSCCC---CCCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCC-SSCCCC---CTTCCEEECCSSCCSCCC---C
T ss_pred CCCCc---ccCCCCcEEECCCCCC-CCCCCc---cchhhEEECcCCcc-cccCCC---CCCCCEEEccCCccCcCC---C
Confidence 77766 3456677777776553 334432 35666666666532 334432 355666666666655555 2
Q ss_pred cccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEe
Q 048831 660 LMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELY 739 (1051)
Q Consensus 660 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~ 739 (1051)
.+++|+.|++++|..... |. .+++|+.|+|++|++. .+|..+.++++|+.|+
T Consensus 239 ~l~~L~~L~Ls~N~L~~l-----------------------p~---~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSL-----------------------PM---LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVN 290 (622)
T ss_dssp CCTTCCEEECCSSCCSCC-----------------------CC---CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEE
T ss_pred CCCcCcEEECCCCCCCcC-----------------------Cc---ccccCcEEeCCCCCCC--cCCHHHhhccccCEEE
Confidence 345555555555543211 11 2344555555555554 2444555555555555
Q ss_pred ccCCCce
Q 048831 740 LSGNNFV 746 (1051)
Q Consensus 740 L~~n~l~ 746 (1051)
|++|.++
T Consensus 291 L~~N~l~ 297 (622)
T 3g06_A 291 LEGNPLS 297 (622)
T ss_dssp CCSCCCC
T ss_pred ecCCCCC
Confidence 5555544
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=2.3e-19 Score=214.33 Aligned_cols=268 Identities=22% Similarity=0.197 Sum_probs=215.1
Q ss_pred CCcEEEecCcccCCcccccCcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCC
Q 048831 399 NLRFLNIGNVQLPEGLEYLSNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLI 478 (1051)
Q Consensus 399 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~ 478 (1051)
+++.|+++++.+..-...++.+|++|++++|.++.+|. .+.+|++|++++|.+..+|. .+++|++|++++|...
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~- 114 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT- 114 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC-
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC-
Confidence 58889999988765555556789999999999999998 67899999999999999887 6799999999998644
Q ss_pred CCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCC
Q 048831 479 KTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLK 558 (1051)
Q Consensus 479 ~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~ 558 (1051)
.+|. .+++|+.|++++| .+..+|.. +++|++|++++| .+..+|. .+++|+.|++++|. +.
T Consensus 115 ~l~~--~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~------------~~~~L~~L~L~~N~-l~ 174 (622)
T 3g06_A 115 HLPA--LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDN-QLASLPA------------LPSELCKLWAYNNQ-LT 174 (622)
T ss_dssp CCCC--CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCC------------CCTTCCEEECCSSC-CS
T ss_pred CCCC--CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCC-cCCCcCC------------ccCCCCEEECCCCC-CC
Confidence 3444 6789999999986 46677764 489999999986 3333332 25689999999975 45
Q ss_pred cCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCC
Q 048831 559 KFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQV 638 (1051)
Q Consensus 559 ~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l 638 (1051)
.+| ..+++|+.|++++|.++.+|.. +++|+.|++++|. +..+|. .+++|+.|++++|. +..+| ..+
T Consensus 175 ~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~-l~~l~~---~~~~L~~L~Ls~N~-L~~lp---~~l 240 (622)
T 3g06_A 175 SLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTSLPA---LPSGLKELIVSGNR-LTSLP---VLP 240 (622)
T ss_dssp CCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCC---CCTTCCEEECCSSC-CSCCC---CCC
T ss_pred CCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCc-ccccCC---CCCCCCEEEccCCc-cCcCC---CCC
Confidence 577 5678999999999999998864 4789999999986 446664 35899999999985 45577 566
Q ss_pred CCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCC
Q 048831 639 ESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDC 718 (1051)
Q Consensus 639 ~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 718 (1051)
++|+.|++++|.+..+|. .+++|+.|++++|.... +|..+.++++|+.|+|++|
T Consensus 241 ~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~-----------------------lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 241 SELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTR-----------------------LPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCS-----------------------CCGGGGGSCTTCEEECCSC
T ss_pred CcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCc-----------------------CCHHHhhccccCEEEecCC
Confidence 899999999999999987 67999999999987542 2556888999999999999
Q ss_pred CCCCccccccccCCC
Q 048831 719 GLREGAILSDICNLH 733 (1051)
Q Consensus 719 ~l~~~~~~~~l~~l~ 733 (1051)
++. +..|..+..++
T Consensus 295 ~l~-~~~~~~l~~L~ 308 (622)
T 3g06_A 295 PLS-ERTLQALREIT 308 (622)
T ss_dssp CCC-HHHHHHHHHHH
T ss_pred CCC-CcCHHHHHhcc
Confidence 996 44555554443
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=1.2e-20 Score=207.97 Aligned_cols=218 Identities=19% Similarity=0.219 Sum_probs=119.8
Q ss_pred eEEEEcCCCCCCCCCCCCCCCeeEEEcCccCccccccc-ccCCCCCCEEecCCCCCCCC---CCCCCCCCccCEEEeeCC
Q 048831 422 RLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKG-IKPLNTLKVMKLSHSENLIK---TPNFIEVPNLEVLDLKGC 497 (1051)
Q Consensus 422 r~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~L~~~~~l~~---~~~~~~l~~L~~L~L~~c 497 (1051)
+.+++.++.++++|..+. .+|++|+++++.+..++.. +..+++|++|++++|..... .+.+..+++|++|+|++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 355666666677776542 5666666666666666654 45666666666666543211 112333444555555443
Q ss_pred CCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCc-hhhCCCCCCCEEEec
Q 048831 498 TSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFP-AIVASMEDLSELYLD 576 (1051)
Q Consensus 498 ~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p-~~~~~l~~L~~L~L~ 576 (1051)
. +..++ ..+..+++|++|++++|......+ ..+..+++|++|+++
T Consensus 89 ~-i~~l~---------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 89 G-VITMS---------------------------------SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134 (306)
T ss_dssp S-EEEEE---------------------------------EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT
T ss_pred c-cccCh---------------------------------hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC
Confidence 2 22333 334445555555555543222221 345555666666666
Q ss_pred CccCccc-CccccCCCCCCEEecCCCCCCC-cccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCC
Q 048831 577 GTYITEV-PSSIELLTGLELLNLNDCKNLV-RLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRP 654 (1051)
Q Consensus 577 ~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 654 (1051)
+|.+... |..+..+++|+.|++++|.... .+|..+..+++|++|++++|......|..+..+++|++|++++|.+..+
T Consensus 135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence 6665533 3345566666666666655443 3555666666666666666655555566666777777777777766655
Q ss_pred Cc-ccccccCCcEEEccCCCC
Q 048831 655 PS-SIFLMKNLKTLSFSGCNG 674 (1051)
Q Consensus 655 ~~-~l~~l~~L~~L~l~~~~~ 674 (1051)
+. .+..+++|+.|++++|..
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCC
T ss_pred ChhhccCcccCCEeECCCCCC
Confidence 43 344455555555555543
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=211.03 Aligned_cols=205 Identities=23% Similarity=0.272 Sum_probs=154.3
Q ss_pred ccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCC
Q 048831 539 TISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPS-SIELLTGLELLNLNDCKNLVRLPNSINGLKSL 617 (1051)
Q Consensus 539 ~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L 617 (1051)
.+.++++|++|+|++|......+..+..+++|++|+|++|.++.+|. .+..+++|++|+|++|......+..+..+++|
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence 35557777777777776555555677777888888888888877765 47778888888888776554444567778888
Q ss_pred CEEeccCCCCCCcCCc-ccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCC
Q 048831 618 KTLNLSGCCKLENVPD-TLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCP 696 (1051)
Q Consensus 618 ~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 696 (1051)
++|++++|..+..++. .+..+++|++|++++|.+..+|. +..+++|+.|++++|.....
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~------------------- 222 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAI------------------- 222 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEE-------------------
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCcc-------------------
Confidence 8888888777776655 57778888888888888887763 67788888888888764322
Q ss_pred ccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceecccc-ccCCCCCCEEeccCCc
Q 048831 697 VALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPAS-ISGLFNLKYLELEDCK 767 (1051)
Q Consensus 697 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~c~ 767 (1051)
.+..+.++++|+.|+|++|.+. ...+..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 223 ---~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 223 ---RPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ---CTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ---ChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 1445778888999999998886 34456778888999999999998888764 4778889999998887
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.3e-19 Score=211.31 Aligned_cols=205 Identities=26% Similarity=0.267 Sum_probs=140.7
Q ss_pred ccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCC
Q 048831 539 TISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSS-IELLTGLELLNLNDCKNLVRLPNSINGLKSL 617 (1051)
Q Consensus 539 ~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L 617 (1051)
.+.++++|++|+|++|......|..+..+++|++|+|++|.++.+|.. +..+++|++|+|++|......+..+..+++|
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence 344566666666666655555556666777777777777777766554 6667777777777766443334456677777
Q ss_pred CEEeccCCCCCCcCCc-ccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCC
Q 048831 618 KTLNLSGCCKLENVPD-TLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCP 696 (1051)
Q Consensus 618 ~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 696 (1051)
+.|++++|..++.++. .+..+++|++|++++|.+..+| .+..+++|+.|++++|.....
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~------------------- 233 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEI------------------- 233 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEE-------------------
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCccc-------------------
Confidence 7777777766666654 4667777777777777777665 366677777777777654322
Q ss_pred ccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceecccc-ccCCCCCCEEeccCCc
Q 048831 697 VALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPAS-ISGLFNLKYLELEDCK 767 (1051)
Q Consensus 697 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~c~ 767 (1051)
.+..+.++++|+.|+|++|.+. ...+..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 234 ---~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 234 ---RPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ---CGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ---CcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 1345677778888888888775 34456677788888888888888877654 4678888888888876
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=8.8e-20 Score=201.14 Aligned_cols=204 Identities=21% Similarity=0.172 Sum_probs=110.9
Q ss_pred ccCceecEEeeeCCCCCC--cCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCccc-ccccCCCCC
Q 048831 541 SSLKCLRTLKLSGCSKLK--KFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLP-NSINGLKSL 617 (1051)
Q Consensus 541 ~~l~~L~~L~Ls~c~~~~--~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L 617 (1051)
.++++|++|+|++|.... ..|..+..+++|++|++++|.+..+|..+..+++|++|++++|......+ ..+..+++|
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 128 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC
T ss_pred hccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCC
Confidence 445566666666554331 12444555666666666666666666666666666666666654332222 345566666
Q ss_pred CEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcC--CCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCC
Q 048831 618 KTLNLSGCCKLENVPDTLGQVESLEELDISGTATRR--PPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSC 695 (1051)
Q Consensus 618 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 695 (1051)
++|++++|......+..+..+++|++|++++|.+.. .|..+..+++|+.|++++|.....
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------------ 190 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL------------------ 190 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE------------------
T ss_pred CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc------------------
Confidence 666666665555555556666666666666666543 455555555555555555543211
Q ss_pred CccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceec-cccccCCC-CCCEEeccCCc
Q 048831 696 PVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTL-PASISGLF-NLKYLELEDCK 767 (1051)
Q Consensus 696 ~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~-~L~~L~l~~c~ 767 (1051)
.+..+.++++|+.|+|++|.+.. ..+..+..+++|+.|+|++|.++.. |..+..++ +|+.|++++|+
T Consensus 191 ----~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 191 ----SPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ----CTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ----CHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 02334455556666666665542 1222345555666666666655543 33444442 55555555554
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=2.8e-19 Score=208.59 Aligned_cols=241 Identities=21% Similarity=0.241 Sum_probs=185.4
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCccccc-ccccCCCCCCEEecCCCCCCCCCC-CCCCCCccCEEEeeCCC
Q 048831 421 LRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELW-KGIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLKGCT 498 (1051)
Q Consensus 421 Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~L~~c~ 498 (1051)
.+.++..+..++.+|..+. .++++|++++|++..++ ..+..+++|+.|+|++|......+ .|.++++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4556666667777776553 57777777777777663 457777788888887776544443 37777888888887754
Q ss_pred CChhhhh-hhccCCCCcEEecCCCCCCCccCCCCCCCCCcc-ccccCceecEEeeeCCCCCCcCch-hhCCCCCCCEEEe
Q 048831 499 SLREIHS-SLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPV-TISSLKCLRTLKLSGCSKLKKFPA-IVASMEDLSELYL 575 (1051)
Q Consensus 499 ~l~~l~~-si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~~~~~p~-~~~~l~~L~~L~L 575 (1051)
+..++. .+..+++|+.|+++++. +..+|. .+..+++|++|++++|+.++.++. .+..+++|++|++
T Consensus 135 -l~~~~~~~~~~l~~L~~L~L~~N~----------l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 135 -LTVIPSGAFEYLSKLRELWLRNNP----------IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp -CSBCCTTTSSSCTTCCEEECCSCC----------CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred -CCccChhhhcccCCCCEEECCCCC----------cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 445544 36677888888887742 223332 466788899999998888887765 5788899999999
Q ss_pred cCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCC
Q 048831 576 DGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPP 655 (1051)
Q Consensus 576 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~ 655 (1051)
++|.+..+| .+..+++|+.|+|++|......|..+.++++|+.|++++|......+..+..+++|+.|++++|.+..+|
T Consensus 204 ~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 204 GMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp TTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 999999886 4788999999999999877777888999999999999999877777888999999999999999998887
Q ss_pred cc-cccccCCcEEEccCCCC
Q 048831 656 SS-IFLMKNLKTLSFSGCNG 674 (1051)
Q Consensus 656 ~~-l~~l~~L~~L~l~~~~~ 674 (1051)
.. +..+++|+.|++++|+.
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCE
T ss_pred hHHhccccCCCEEEccCCCc
Confidence 54 56789999999998863
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=2.1e-19 Score=208.78 Aligned_cols=241 Identities=20% Similarity=0.263 Sum_probs=180.6
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCccccc-ccccCCCCCCEEecCCCCCCCCCC-CCCCCCccCEEEeeCCC
Q 048831 421 LRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELW-KGIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLKGCT 498 (1051)
Q Consensus 421 Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~L~~c~ 498 (1051)
.+.++..+..++.+|..+. .+++.|++++|++..++ ..+..+++|++|+|++|......+ .|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n- 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN- 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-
Confidence 4456666666677776553 56777777777777665 346677777777777775443332 3667777777777775
Q ss_pred CChhhhh-hhccCCCCcEEecCCCCCCCccCCCCCCCCCcc-ccccCceecEEeeeCCCCCCcCch-hhCCCCCCCEEEe
Q 048831 499 SLREIHS-SLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPV-TISSLKCLRTLKLSGCSKLKKFPA-IVASMEDLSELYL 575 (1051)
Q Consensus 499 ~l~~l~~-si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~~~~~p~-~~~~l~~L~~L~L 575 (1051)
.+..++. .+..+++|+.|+++++. +..+|. .+..+++|++|+|++|..+..++. .+..+++|++|++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~----------i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNP----------IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCC----------CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred cCCeeCHhHhhccccCceeeCCCCc----------ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecC
Confidence 3445544 46677777777777642 222322 456688888999988877777665 5788899999999
Q ss_pred cCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCC
Q 048831 576 DGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPP 655 (1051)
Q Consensus 576 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~ 655 (1051)
++|.++.+|. +..+++|+.|+|++|......|..+.++++|+.|++++|......+..+..+++|+.|++++|.+..+|
T Consensus 193 ~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 193 AMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp TTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 9999998874 788999999999998777667888999999999999998877777788899999999999999988887
Q ss_pred cc-cccccCCcEEEccCCCC
Q 048831 656 SS-IFLMKNLKTLSFSGCNG 674 (1051)
Q Consensus 656 ~~-l~~l~~L~~L~l~~~~~ 674 (1051)
.. +..+++|+.|++++|+.
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCE
T ss_pred hhHhccccCCCEEEcCCCCc
Confidence 64 56789999999998763
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=204.29 Aligned_cols=263 Identities=19% Similarity=0.198 Sum_probs=181.4
Q ss_pred EEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccc-cccCCCCCCEEecCCCCCCCCCCC-CCCCCccCEEEeeCCCCC
Q 048831 423 LLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWK-GIKPLNTLKVMKLSHSENLIKTPN-FIEVPNLEVLDLKGCTSL 500 (1051)
Q Consensus 423 ~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~L~~c~~l 500 (1051)
..+.+++.++.+|..+. .+|++|++++|.++.++. .+..+++|++|++++|......+. |.++++|++|+|++|. +
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l 112 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-L 112 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-C
Confidence 35666777788887654 478888888888888776 577888888888888865544443 7888888888888754 4
Q ss_pred hhhhhh-hccCCCCcEEecCCCCCCCccCCCCCCCCCcc--ccccCceecEEeeeCCCCCCcC-chhhCCCCCCCEEEec
Q 048831 501 REIHSS-LLRHNKLILLNLKGCTSLTTLPDCKNLSSLPV--TISSLKCLRTLKLSGCSKLKKF-PAIVASMEDLSELYLD 576 (1051)
Q Consensus 501 ~~l~~s-i~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~--~l~~l~~L~~L~Ls~c~~~~~~-p~~~~~l~~L~~L~L~ 576 (1051)
..++.. +..+++|++|+++++ .+..+|. .+..+++|++|++++|..+..+ +..+..+++|++|+++
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n----------~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGN----------PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTC----------CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CcCCHhHhCCCccCCEEECCCC----------CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 556554 777888888888874 2334443 4667888888888888655554 4567888888888888
Q ss_pred CccCccc-CccccCCCCCCEEecCCCCCCCccccc-ccCCCCCCEEeccCCCCCCcCCccc---CCCCCccEEEccCCCC
Q 048831 577 GTYITEV-PSSIELLTGLELLNLNDCKNLVRLPNS-INGLKSLKTLNLSGCCKLENVPDTL---GQVESLEELDISGTAT 651 (1051)
Q Consensus 577 ~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~l---~~l~~L~~L~l~~~~~ 651 (1051)
+|.+..+ |..+..+++|++|++++|.. ..+|.. +..+++|+.|++++|......+..+ .....++.++++++.+
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred CCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 8888765 66788888888888888764 444433 3457888888888876554333222 2345667777776654
Q ss_pred c-----CCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCC-CCCCCCCCEEeccCCCCC
Q 048831 652 R-----RPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPS-LSGLCSLSKLDLSDCGLR 721 (1051)
Q Consensus 652 ~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~ 721 (1051)
. .+|..+..+++|+.|++++|..... |.. +.++++|+.|+|++|++.
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i-----------------------~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLKSV-----------------------PDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCCCC-----------------------CTTTTTTCTTCCEEECCSSCBC
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCCcc-----------------------CHHHHhcCCCCCEEEeeCCCcc
Confidence 3 3566677788888888887764421 332 356677777777777664
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=9.9e-20 Score=198.43 Aligned_cols=218 Identities=20% Similarity=0.247 Sum_probs=114.2
Q ss_pred eEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccc-cccCCCCCCEEecCCCCCCCCCC-CCCCCCccCEEEeeCCCC
Q 048831 422 RLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWK-GIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLKGCTS 499 (1051)
Q Consensus 422 r~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~L~~c~~ 499 (1051)
+.+++.+..++.+|..+ +.+|++|+++++.+..++. .+..+++|++|++++|......+ .+.++++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 56677777777777654 4677777777777777664 36677777777777765443323 366667777777776654
Q ss_pred Chhh-hhhhccCCCCcEEecCCCCCCCccCCCCCCCCC-ccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecC
Q 048831 500 LREI-HSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSL-PVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDG 577 (1051)
Q Consensus 500 l~~l-~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~l-p~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~ 577 (1051)
+..+ +..+..+++|+.|+++++. +..+ |..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~----------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 162 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCG----------LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSC----------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccccCHHHhcCCcCCCEEECCCCc----------CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC
Confidence 4444 3344455555555555432 1111 22233445555555555443333333344455555555555
Q ss_pred ccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCC
Q 048831 578 TYITEVPSS-IELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTA 650 (1051)
Q Consensus 578 ~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 650 (1051)
|.++.+|.. +..+++|+.|++++|......|..+..+++|+.|++++|......+..+..+++|+.|++++|.
T Consensus 163 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 555544432 4444555555555544433334444444444444444443332222334444444444444444
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=7.4e-19 Score=191.49 Aligned_cols=203 Identities=26% Similarity=0.327 Sum_probs=162.9
Q ss_pred CceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCccc-CccccCCCCCCEEecCCCCCCCcc-cccccCCCCCCEE
Q 048831 543 LKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEV-PSSIELLTGLELLNLNDCKNLVRL-PNSINGLKSLKTL 620 (1051)
Q Consensus 543 l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L 620 (1051)
.++|++|++++|......+..+..+++|++|++++|.++.+ |..+..+++|++|++++|..+..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 46788888888776655556788888999999999888877 667888899999999988745555 6778888999999
Q ss_pred eccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcc-cccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccc
Q 048831 621 NLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSS-IFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVAL 699 (1051)
Q Consensus 621 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 699 (1051)
++++|......|..+..+++|++|++++|.+..++.. +..+++|+.|++++|......
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------- 169 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP--------------------- 169 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC---------------------
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC---------------------
Confidence 9998887766677888899999999999988887654 778889999999887643210
Q ss_pred cCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccc-cccCCCCCCEEeccCCcc
Q 048831 700 MLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPA-SISGLFNLKYLELEDCKR 768 (1051)
Q Consensus 700 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~c~~ 768 (1051)
+..+.++++|+.|++++|.+. ...|..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+.
T Consensus 170 -~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 170 -ERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp -TTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred -HHHhcCccccCEEECCCCccc-ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 224777889999999999886 3457788889999999999999988875 478899999999998873
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=6.5e-22 Score=232.13 Aligned_cols=348 Identities=20% Similarity=0.183 Sum_probs=250.3
Q ss_pred CcCceEEEEcCCCCCCCCCC--C-CCCCeeEEEcCccCcc-----cccccccCCCCCCEEecCCCCCCCCCC-CC-CCCC
Q 048831 418 SNKLRLLNWHRYPLKSLPSN--L-QLDKIVEFQMCYSHIE-----ELWKGIKPLNTLKVMKLSHSENLIKTP-NF-IEVP 487 (1051)
Q Consensus 418 ~~~Lr~L~l~~~~l~~lp~~--~-~~~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~L~~~~~l~~~~-~~-~~l~ 487 (1051)
+.+|+.|+++++.+...+.. + .+++|++|+++++.+. .++..+..+++|++|++++|......+ .+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 45789999999988765432 3 6889999999999987 456778889999999999986432211 11 2233
Q ss_pred ----ccCEEEeeCCCCC----hhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccc-cccCceecEEeeeCCCCCC
Q 048831 488 ----NLEVLDLKGCTSL----REIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVT-ISSLKCLRTLKLSGCSKLK 558 (1051)
Q Consensus 488 ----~L~~L~L~~c~~l----~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~-l~~l~~L~~L~Ls~c~~~~ 558 (1051)
+|++|+|++|... ..++..+..+++|+.|++++|. +.... ...+... ....++|++|++++|....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~----~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAG----LQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHH----HHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHH----HHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 7999999998644 3678889999999999999864 22100 0011111 1225679999999997665
Q ss_pred c----CchhhCCCCCCCEEEecCccCccc-Ccccc-----CCCCCCEEecCCCCCCCc----ccccccCCCCCCEEeccC
Q 048831 559 K----FPAIVASMEDLSELYLDGTYITEV-PSSIE-----LLTGLELLNLNDCKNLVR----LPNSINGLKSLKTLNLSG 624 (1051)
Q Consensus 559 ~----~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~-----~l~~L~~L~L~~~~~l~~----lp~~i~~L~~L~~L~L~~ 624 (1051)
. ++..+..+++|++|++++|.+... +..+. .+++|+.|++++|..... ++..+..+++|++|++++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 3 466777889999999999998743 22222 467999999999976543 577788899999999999
Q ss_pred CCCCCc----C-CcccCCCCCccEEEccCCCCcC-----CCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCC
Q 048831 625 CCKLEN----V-PDTLGQVESLEELDISGTATRR-----PPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSS 694 (1051)
Q Consensus 625 c~~l~~----l-p~~l~~l~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 694 (1051)
|..... + +.....+++|++|++++|.+.. ++..+..+++|++|++++|.......
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~--------------- 301 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA--------------- 301 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH---------------
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH---------------
Confidence 864332 1 2233468999999999999876 67778889999999999986422100
Q ss_pred CCccccCCC-CCCCCCCCEEeccCCCCCCcc---ccccccCCCcCcEEeccCCCceecc-----ccccC-CCCCCEEecc
Q 048831 695 CPVALMLPS-LSGLCSLSKLDLSDCGLREGA---ILSDICNLHSLKELYLSGNNFVTLP-----ASISG-LFNLKYLELE 764 (1051)
Q Consensus 695 ~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~lp-----~~~~~-l~~L~~L~l~ 764 (1051)
..+... ....++|+.|++++|.+.+.. ++..+..+++|++|+|++|.+.... ..+.. .++|+.|+++
T Consensus 302 ---~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 302 ---RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp ---HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred ---HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 000011 123468999999999987542 5667778899999999999887532 22322 7899999999
Q ss_pred CCcccc----ccCC---CCCCCceEeecCCc
Q 048831 765 DCKRLQ----SLPQ---LPPNVIKVSVNGCA 788 (1051)
Q Consensus 765 ~c~~L~----~lp~---lp~~L~~L~i~~C~ 788 (1051)
+|+.-. .+|. -.++|+.|++.+|.
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 996332 4553 24789999998884
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=4.5e-21 Score=212.33 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=34.7
Q ss_pred CCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCce--eccccccCCCCCCEEeccCCccccc
Q 048831 704 LSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFV--TLPASISGLFNLKYLELEDCKRLQS 771 (1051)
Q Consensus 704 l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~c~~L~~ 771 (1051)
+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+.++.
T Consensus 210 ~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp GGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred hcccCcccEEECcCCccc--chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 344445555555555554 24444555555555555555555 4455555555555555555544433
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=8.2e-21 Score=209.68 Aligned_cols=200 Identities=22% Similarity=0.225 Sum_probs=160.9
Q ss_pred cCceecEEeeeCCCCCCcCchhh--CCCCCCCEEEecCccCcccCccccCC-----CCCCEEecCCCCCCCcccccccCC
Q 048831 542 SLKCLRTLKLSGCSKLKKFPAIV--ASMEDLSELYLDGTYITEVPSSIELL-----TGLELLNLNDCKNLVRLPNSINGL 614 (1051)
Q Consensus 542 ~l~~L~~L~Ls~c~~~~~~p~~~--~~l~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~L~~~~~l~~lp~~i~~L 614 (1051)
.+++|++|+|++|...+.+|..+ ..+++|++|++++|.+..+|..++.+ ++|++|++++|......|..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 57888899999888777777765 88889999999999998888777776 899999999988766666888899
Q ss_pred CCCCEEeccCCCCCCc--CCccc--CCCCCccEEEccCCCCcCCCc---c-cccccCCcEEEccCCCCCCCCCcccCCcc
Q 048831 615 KSLKTLNLSGCCKLEN--VPDTL--GQVESLEELDISGTATRRPPS---S-IFLMKNLKTLSFSGCNGPPSTASCHLNLP 686 (1051)
Q Consensus 615 ~~L~~L~L~~c~~l~~--lp~~l--~~l~~L~~L~l~~~~~~~~~~---~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 686 (1051)
++|++|++++|...+. +|..+ +.+++|++|++++|.+..++. . +..+++|+.|++++|......+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------- 245 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG------- 245 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-------
Confidence 9999999999876554 33344 788999999999998875432 2 2467899999999987654321
Q ss_pred ccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCC
Q 048831 687 FNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDC 766 (1051)
Q Consensus 687 ~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c 766 (1051)
.+.+..+++|+.|+|++|.+. .+|..+. ++|+.|+|++|+++.+|. +..+++|+.|++++|
T Consensus 246 --------------~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 246 --------------APSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp --------------CSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred --------------hhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence 123556789999999999997 4777666 899999999999999987 889999999999998
Q ss_pred c
Q 048831 767 K 767 (1051)
Q Consensus 767 ~ 767 (1051)
+
T Consensus 307 ~ 307 (312)
T 1wwl_A 307 P 307 (312)
T ss_dssp T
T ss_pred C
Confidence 7
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=3.4e-20 Score=205.19 Aligned_cols=237 Identities=16% Similarity=0.088 Sum_probs=157.7
Q ss_pred CCCCCEEecCCCCCCCCCC-CCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccc
Q 048831 463 LNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTIS 541 (1051)
Q Consensus 463 l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~ 541 (1051)
+++|+.|++++|......| .+..+++|++|+|++|.. ..+++ +..+++|++|++++|. +..+|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~Ls~n~----------l~~l~---- 96 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLD-LESLSTLRTLDLNNNY----------VQELL---- 96 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-EEEEE-ETTCTTCCEEECCSSE----------EEEEE----
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-Ccchh-hhhcCCCCEEECcCCc----------ccccc----
Confidence 3445555555544333222 244555555555555332 22222 4555555555555431 11111
Q ss_pred cCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCc-cccCCCCCCEEecCCCCCCCcccccc-cCCCCCCE
Q 048831 542 SLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPS-SIELLTGLELLNLNDCKNLVRLPNSI-NGLKSLKT 619 (1051)
Q Consensus 542 ~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~ 619 (1051)
..++|++|++++|......+. .+++|++|++++|.++.++. .+..+++|++|++++|......|..+ ..+++|++
T Consensus 97 ~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 97 VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (317)
T ss_dssp ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCE
Confidence 246677777777654433322 35678888888888877644 57778888888888877655555555 36788888
Q ss_pred EeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccc
Q 048831 620 LNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVAL 699 (1051)
Q Consensus 620 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 699 (1051)
|++++|.... ++. ...+++|++|++++|.+..+|..+..+++|+.|++++|....
T Consensus 174 L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~----------------------- 228 (317)
T 3o53_A 174 LNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL----------------------- 228 (317)
T ss_dssp EECTTSCCCE-EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-----------------------
T ss_pred EECCCCcCcc-ccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-----------------------
Confidence 8888876443 333 335888999999999998888888889999999999886432
Q ss_pred cCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCC
Q 048831 700 MLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGN 743 (1051)
Q Consensus 700 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n 743 (1051)
+|..+..+++|+.|++++|.+..+.++..+..+++|+.|++.++
T Consensus 229 l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 25567888999999999999975678888999999999999865
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=4e-18 Score=199.77 Aligned_cols=212 Identities=17% Similarity=0.113 Sum_probs=145.1
Q ss_pred CCcEEecCCCCCCCccCCCCCCCCC-ccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCC
Q 048831 512 KLILLNLKGCTSLTTLPDCKNLSSL-PVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELL 590 (1051)
Q Consensus 512 ~L~~L~L~~c~~l~~l~~~~~l~~l-p~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 590 (1051)
+|+.|+|+++ .+..+ |..+..+++|++|+|++|......| +..+++|++|++++|.++.+|. .
T Consensus 35 ~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~ 98 (487)
T 3oja_A 35 NVKELDLSGN----------PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----G 98 (487)
T ss_dssp GCCEEECCSS----------CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----C
T ss_pred CccEEEeeCC----------cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----C
Confidence 5666666653 22222 2356667777777777766444443 6777778888888777776654 2
Q ss_pred CCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCC-Ccccc-cccCCcEEE
Q 048831 591 TGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRP-PSSIF-LMKNLKTLS 668 (1051)
Q Consensus 591 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~l~-~l~~L~~L~ 668 (1051)
++|+.|++++|......+. .+++|+.|++++|......|..++.+++|+.|++++|.+... |..+. .+++|+.|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 7788888887765443332 457788888888776666666777788888888888877664 44454 677888888
Q ss_pred ccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceec
Q 048831 669 FSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTL 748 (1051)
Q Consensus 669 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l 748 (1051)
+++|..... +....+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.++.+
T Consensus 176 Ls~N~l~~~------------------------~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~l 229 (487)
T 3oja_A 176 LQYNFIYDV------------------------KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLI 229 (487)
T ss_dssp CTTSCCCEE------------------------ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEE
T ss_pred cCCCccccc------------------------cccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCccc
Confidence 887764321 123347778888888888753 555677788888888888888888
Q ss_pred cccccCCCCCCEEeccCCcc
Q 048831 749 PASISGLFNLKYLELEDCKR 768 (1051)
Q Consensus 749 p~~~~~l~~L~~L~l~~c~~ 768 (1051)
|..+..+++|+.|++++|+.
T Consensus 230 p~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCB
T ss_pred chhhccCCCCCEEEcCCCCC
Confidence 87777788888888887764
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=5.9e-20 Score=222.82 Aligned_cols=371 Identities=15% Similarity=0.056 Sum_probs=202.2
Q ss_pred hhcCCCCCcEEEecCcccCCc----ccc-cCcCceEEEEcCCCCC---CCCCCC-CCCCeeEEEcCccCcccc-----cc
Q 048831 393 AFSLMTNLRFLNIGNVQLPEG----LEY-LSNKLRLLNWHRYPLK---SLPSNL-QLDKIVEFQMCYSHIEEL-----WK 458 (1051)
Q Consensus 393 ~f~~~~~Lr~L~l~~~~l~~~----~~~-l~~~Lr~L~l~~~~l~---~lp~~~-~~~~L~~L~l~~~~i~~l-----~~ 458 (1051)
.+..+++|+.|+++++.+.+. +.. .+.+|++|++.++... .++... .+++|++|++++|.+... +.
T Consensus 107 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred HHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 344678888888888766432 222 2334888888877511 111111 567888888888876432 22
Q ss_pred cccCCCCCCEEecCCCCCCC----CCCC-CCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCC
Q 048831 459 GIKPLNTLKVMKLSHSENLI----KTPN-FIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNL 533 (1051)
Q Consensus 459 ~~~~l~~L~~L~L~~~~~l~----~~~~-~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l 533 (1051)
....+++|+.|+++++.... .++. +.++++|++|++++|. +..++..+..+++|+.|+++++..... .
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~------~ 259 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIG------M 259 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTT------C
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccc------h
Confidence 34567888889988876531 1111 4567889999998864 556778888888898888875322211 1
Q ss_pred CCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcc--cCccccCCCCCCEEecCCCCCCCcccccc
Q 048831 534 SSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITE--VPSSIELLTGLELLNLNDCKNLVRLPNSI 611 (1051)
Q Consensus 534 ~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~i 611 (1051)
...+..+..+++|+.|+++++ ....+|..+..+++|++|++++|.+.. ++..+..+++|+.|+++++.....++...
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~ 338 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH
Confidence 122234445666666666663 344556666666667777777666542 22335666677777666432222333334
Q ss_pred cCCCCCCEEeccC----------CCCCCc--CCcccCCCCCccEEEccCCCCcCC-Cccccc-ccCCcEEEccCCC---C
Q 048831 612 NGLKSLKTLNLSG----------CCKLEN--VPDTLGQVESLEELDISGTATRRP-PSSIFL-MKNLKTLSFSGCN---G 674 (1051)
Q Consensus 612 ~~L~~L~~L~L~~----------c~~l~~--lp~~l~~l~~L~~L~l~~~~~~~~-~~~l~~-l~~L~~L~l~~~~---~ 674 (1051)
..+++|++|++++ |..+.. ++.....+++|++|+++.+.+... +..+.. +++|+.|++++|. .
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence 4566677777663 444331 222234466666666655554322 223333 5666666665322 2
Q ss_pred CCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCC--CCCccccccccCCCcCcEEeccCCCce--eccc
Q 048831 675 PPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCG--LREGAILSDICNLHSLKELYLSGNNFV--TLPA 750 (1051)
Q Consensus 675 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~--l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~ 750 (1051)
....+.. ..++..+.++++|+.|+|++|. +.+..+......+++|+.|+|++|+++ .++.
T Consensus 419 l~~~p~~----------------~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 419 ITDLPLD----------------NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp CSSCCCH----------------HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred ccCchHH----------------HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence 1111000 0001113345566666665543 332222222233556666666666654 2344
Q ss_pred cccCCCCCCEEeccCCccccc--cCC---CCCCCceEeecCCc
Q 048831 751 SISGLFNLKYLELEDCKRLQS--LPQ---LPPNVIKVSVNGCA 788 (1051)
Q Consensus 751 ~~~~l~~L~~L~l~~c~~L~~--lp~---lp~~L~~L~i~~C~ 788 (1051)
.+..+++|+.|+|++|+ +.. ++. -.++|+.|++.+|.
T Consensus 483 ~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 44556666666666665 221 121 13456666666665
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=3.4e-19 Score=208.80 Aligned_cols=235 Identities=17% Similarity=0.129 Sum_probs=120.8
Q ss_pred CCCCCCEEecCCCCCCCCCC-CCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCcccc
Q 048831 462 PLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTI 540 (1051)
Q Consensus 462 ~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l 540 (1051)
.+++|+.|+|++|.....+| .|..+++|++|+|++|.. ..+++ +..+++|+.|++++|. +. .+|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~-l~---------~l~--- 96 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLD-LESLSTLRTLDLNNNY-VQ---------ELL--- 96 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC-EEEEE-CTTCTTCCEEECCSSE-EE---------EEE---
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC-CCCcc-cccCCCCCEEEecCCc-CC---------CCC---
Confidence 34478888888886555444 477788888888887643 32322 5566666666666531 11 111
Q ss_pred ccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCCE
Q 048831 541 SSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEV-PSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKT 619 (1051)
Q Consensus 541 ~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 619 (1051)
..++|++|++++|......+. .+++|+.|++++|.+..+ |..++.+++|+.|++++|......|..+.
T Consensus 97 -~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~------- 165 (487)
T 3oja_A 97 -VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA------- 165 (487)
T ss_dssp -ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-------
T ss_pred -CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-------
Confidence 124555555555443332221 234455555555555543 23344455555555555444433443333
Q ss_pred EeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccc
Q 048831 620 LNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVAL 699 (1051)
Q Consensus 620 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 699 (1051)
..+++|+.|++++|.+..++. ...+++|+.|++++|.....
T Consensus 166 ----------------~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~---------------------- 206 (487)
T 3oja_A 166 ----------------ASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFM---------------------- 206 (487)
T ss_dssp ----------------GGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEE----------------------
T ss_pred ----------------hhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCC----------------------
Confidence 134444444444444444322 12344555555554432211
Q ss_pred cCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCce--eccccccCCCCCCEEecc
Q 048831 700 MLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFV--TLPASISGLFNLKYLELE 764 (1051)
Q Consensus 700 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~ 764 (1051)
++.+..+++|+.|+|++|.+.. +|..+..+++|+.|++++|.+. .+|..+..++.|+.|.+.
T Consensus 207 -~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 207 -GPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -CGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -CHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 2334445555666666665542 5555556666666666666665 455555666666666554
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=8.8e-20 Score=221.27 Aligned_cols=317 Identities=15% Similarity=0.124 Sum_probs=197.3
Q ss_pred CceEEEEcCCCCCCCCCC-----C-CCCCeeEEEcCccCcc-----cccccccCCCCCCEEecCCCCCCCCCCCCCCCCc
Q 048831 420 KLRLLNWHRYPLKSLPSN-----L-QLDKIVEFQMCYSHIE-----ELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPN 488 (1051)
Q Consensus 420 ~Lr~L~l~~~~l~~lp~~-----~-~~~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~ 488 (1051)
+|+.|++++|.+...... . .+++|++|+++++.+. .++..+..+++|+.|++++|........+.++++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~ 244 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhH
Confidence 566666666654332211 1 4566777777776664 2333355677777777777654332223556777
Q ss_pred cCEEEeeCCCCC---hhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCc-Cchhh
Q 048831 489 LEVLDLKGCTSL---REIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKK-FPAIV 564 (1051)
Q Consensus 489 L~~L~L~~c~~l---~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~-~p~~~ 564 (1051)
|++|+++++... ...+..+..+++|+.|++.++ ....+|..+..+++|++|+|++|..... ++..+
T Consensus 245 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~----------~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM----------GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC----------CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred HHhhcccccccccchHHHHHHhhccccccccCcccc----------chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 777777654332 233445666777777777652 2234566666788888888888873322 33456
Q ss_pred CCCCCCCEEEecCccCc--ccCccccCCCCCCEEecCC----------CCCCCc--ccccccCCCCCCEEeccCCCCCCc
Q 048831 565 ASMEDLSELYLDGTYIT--EVPSSIELLTGLELLNLND----------CKNLVR--LPNSINGLKSLKTLNLSGCCKLEN 630 (1051)
Q Consensus 565 ~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~----------~~~l~~--lp~~i~~L~~L~~L~L~~c~~l~~ 630 (1051)
..+++|++|+++ +.+. .++.....+++|++|++++ |..+.. ++.....+++|++|+++.+.....
T Consensus 315 ~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 315 QKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp TTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred HhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 788888888887 4343 3444456778888888884 544432 233345578888888855444333
Q ss_pred CCcccCC-CCCccEEEcc----CCCCcCCCc------ccccccCCcEEEccCCCCC-CCCCcccCCccccccccCCCCcc
Q 048831 631 VPDTLGQ-VESLEELDIS----GTATRRPPS------SIFLMKNLKTLSFSGCNGP-PSTASCHLNLPFNLMRKSSCPVA 698 (1051)
Q Consensus 631 lp~~l~~-l~~L~~L~l~----~~~~~~~~~------~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 698 (1051)
.+..+.. +++|+.|+++ .+.+...|. .+..+++|+.|+++.|... ....
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~------------------- 454 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG------------------- 454 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH-------------------
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH-------------------
Confidence 3344443 7788888886 445555432 2556888888888776531 1100
Q ss_pred ccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCcee--ccccccCCCCCCEEeccCCc
Q 048831 699 LMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVT--LPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 699 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~c~ 767 (1051)
.......+++|+.|+|++|++++..++..+..+++|+.|+|++|.++. ++..+..+++|+.|+|++|+
T Consensus 455 -~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 455 -LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp -HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred -HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 000112367788888888888765667777788888888888888752 45555678888888888887
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=1.1e-17 Score=181.22 Aligned_cols=209 Identities=21% Similarity=0.168 Sum_probs=159.1
Q ss_pred CCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCc-cccCCCCCCEEecCCCCCCCccccccc
Q 048831 534 SSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPS-SIELLTGLELLNLNDCKNLVRLPNSIN 612 (1051)
Q Consensus 534 ~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~ 612 (1051)
..+|..+ .++|++|++++|......+..+..+++|++|++++|.+..++. .+..+++|++|++++|......+..+.
T Consensus 20 ~~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 20 YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SSCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 3444433 3578888888876655555578888899999999998887765 578889999999998876666667788
Q ss_pred CCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcC--CCcccccccCCcEEEccCCCCCCCCCcccCCcccccc
Q 048831 613 GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRR--PPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLM 690 (1051)
Q Consensus 613 ~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 690 (1051)
++++|++|++++|......+..++.+++|++|++++|.+.. +|..+..+++|+.|++++|......
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~------------ 165 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY------------ 165 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC------------
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC------------
Confidence 89999999998887666555578888999999999998876 5788888999999999888654321
Q ss_pred ccCCCCccccCCCCCCCCCCC----EEeccCCCCCCccccccccCCCcCcEEeccCCCceecccc-ccCCCCCCEEeccC
Q 048831 691 RKSSCPVALMLPSLSGLCSLS----KLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPAS-ISGLFNLKYLELED 765 (1051)
Q Consensus 691 ~~~~~~~~~~~~~l~~l~~L~----~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~ 765 (1051)
+..+..+++|+ .|++++|.+.. ++.......+|+.|+|++|.++.+|.. +..+++|+.|++++
T Consensus 166 ----------~~~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 166 ----------CTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp ----------GGGGHHHHTCTTCCEEEECCSSCCCE--ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred ----------HHHhhhhhhccccceeeecCCCcccc--cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 11233333344 89999998863 555555556899999999999988875 47899999999998
Q ss_pred Ccc
Q 048831 766 CKR 768 (1051)
Q Consensus 766 c~~ 768 (1051)
|+.
T Consensus 234 N~~ 236 (276)
T 2z62_A 234 NPW 236 (276)
T ss_dssp SCB
T ss_pred Ccc
Confidence 873
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=3.8e-20 Score=224.64 Aligned_cols=376 Identities=16% Similarity=0.119 Sum_probs=219.2
Q ss_pred hhcCCCCCcEEEecCcccCCc----ccccCcCceEEEEcCC-CCCC--CCCCC-CCCCeeEEEcCccCccc-----cccc
Q 048831 393 AFSLMTNLRFLNIGNVQLPEG----LEYLSNKLRLLNWHRY-PLKS--LPSNL-QLDKIVEFQMCYSHIEE-----LWKG 459 (1051)
Q Consensus 393 ~f~~~~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~-~l~~--lp~~~-~~~~L~~L~l~~~~i~~-----l~~~ 459 (1051)
.+..+++|+.|+++++.+... +.....+|+.|++.++ .+.. ++... .+++|++|++++|.+.. ++..
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 345678899999988876432 2212347999999887 3332 44444 67899999999988654 3334
Q ss_pred ccCCCCCCEEecCCCCCCCC---CCC-CCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCC
Q 048831 460 IKPLNTLKVMKLSHSENLIK---TPN-FIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSS 535 (1051)
Q Consensus 460 ~~~l~~L~~L~L~~~~~l~~---~~~-~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~ 535 (1051)
...+++|+.|++++|..... ++. +.++++|++|++++|..+..++..+..+++|+.|++..|..- + ....+..
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~-~~~~~~~ 256 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE--V-RPDVYSG 256 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC--C-CHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc--c-chhhHHH
Confidence 45788999999998861111 111 235799999999999888888889999999999998765420 0 0012233
Q ss_pred CccccccCceecEE-eeeCCCCCCcCchhhCCCCCCCEEEecCccCcc--cCccccCCCCCCEEecCCCCCCCccccccc
Q 048831 536 LPVTISSLKCLRTL-KLSGCSKLKKFPAIVASMEDLSELYLDGTYITE--VPSSIELLTGLELLNLNDCKNLVRLPNSIN 612 (1051)
Q Consensus 536 lp~~l~~l~~L~~L-~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~ 612 (1051)
++..+.++++|+.| .+.+. ....++..+..+++|++|++++|.+.. ++..+..+++|+.|++++|.....++....
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~ 335 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHH
Confidence 44455666777776 33332 223455555566777777777777552 333355677777777776622122222233
Q ss_pred CCCCCCEEeccCC--------CCCCc--CCcccCCCCCccEEEccCCCCcCC-Ccccc-cccCCcEEEcc-----CCCCC
Q 048831 613 GLKSLKTLNLSGC--------CKLEN--VPDTLGQVESLEELDISGTATRRP-PSSIF-LMKNLKTLSFS-----GCNGP 675 (1051)
Q Consensus 613 ~L~~L~~L~L~~c--------~~l~~--lp~~l~~l~~L~~L~l~~~~~~~~-~~~l~-~l~~L~~L~l~-----~~~~~ 675 (1051)
.+++|++|++.+| ..+.. +......+++|+.|.+..+.+... +..+. .+++|+.|+++ +|...
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence 4677777777432 22211 111112367777776666655432 12222 46777777777 33333
Q ss_pred CCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCcee--cccccc
Q 048831 676 PSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVT--LPASIS 753 (1051)
Q Consensus 676 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~--lp~~~~ 753 (1051)
...+.. ..++..+.++++|+.|+|++ .+.+..++.....+++|+.|+|++|.++. ++....
T Consensus 416 ~~~~~~----------------~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~ 478 (594)
T 2p1m_B 416 TLEPLD----------------IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478 (594)
T ss_dssp TCCCTH----------------HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH
T ss_pred cCCchh----------------hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHh
Confidence 221100 00011134566777777766 55433322222236777777777777652 222225
Q ss_pred CCCCCCEEeccCCccccc----cCCCCCCCceEeecCCcc
Q 048831 754 GLFNLKYLELEDCKRLQS----LPQLPPNVIKVSVNGCAS 789 (1051)
Q Consensus 754 ~l~~L~~L~l~~c~~L~~----lp~lp~~L~~L~i~~C~~ 789 (1051)
.+++|+.|+|++|+.-.. +..-.++|+.|++.+|+.
T Consensus 479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 577777777777764111 111235677777777754
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=2e-19 Score=198.48 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=38.4
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCccc--cccccc-------CCCCCCEEecCCCCCCCCCCC-C--CCCC
Q 048831 420 KLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEE--LWKGIK-------PLNTLKVMKLSHSENLIKTPN-F--IEVP 487 (1051)
Q Consensus 420 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~--l~~~~~-------~l~~L~~L~L~~~~~l~~~~~-~--~~l~ 487 (1051)
+|+.|++.++.+ .+|..+... |+.|+++++.+.. ++..+. .+++|++|++++|......|. + ..++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI-IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH-HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHHHH-HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 455566666666 555544111 6666666665543 232222 455556666655554433332 2 4555
Q ss_pred ccCEEEeeCC
Q 048831 488 NLEVLDLKGC 497 (1051)
Q Consensus 488 ~L~~L~L~~c 497 (1051)
+|++|+|++|
T Consensus 122 ~L~~L~Ls~N 131 (312)
T 1wwl_A 122 DLNILNLRNV 131 (312)
T ss_dssp CCSEEEEESC
T ss_pred CccEEEccCC
Confidence 5555555553
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=4e-17 Score=177.55 Aligned_cols=174 Identities=25% Similarity=0.232 Sum_probs=105.7
Q ss_pred ceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEecc
Q 048831 544 KCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLS 623 (1051)
Q Consensus 544 ~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~ 623 (1051)
++|++|+|++|......+..+..+++|++|++++|.++.++.. + .+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~------------------------~l~~L~~L~Ls 85 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-G------------------------TLPVLGTLDLS 85 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-S------------------------CCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-C------------------------CCCcCCEEECC
Confidence 3445555555444333344445555555555555555444432 3 44455555555
Q ss_pred CCCCCCcCCcccCCCCCccEEEccCCCCcCCC-cccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCC
Q 048831 624 GCCKLENVPDTLGQVESLEELDISGTATRRPP-SSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLP 702 (1051)
Q Consensus 624 ~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 702 (1051)
+|. +..+|..+..+++|++|++++|.+..+| ..+..+++|+.|++++|...... +.
T Consensus 86 ~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~ 142 (290)
T 1p9a_G 86 HNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP----------------------PG 142 (290)
T ss_dssp SSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC----------------------TT
T ss_pred CCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC----------------------hh
Confidence 443 2344555555555555555555555554 23555566666666655433210 22
Q ss_pred CCCCCCCCCEEeccCCCCCCccccc-cccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCc
Q 048831 703 SLSGLCSLSKLDLSDCGLREGAILS-DICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 703 ~l~~l~~L~~L~L~~~~l~~~~~~~-~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
.+..+++|+.|+|++|++.. +|. .+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred hcccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 35667888888888888863 443 4577899999999999999999988888899999998887
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=1.6e-16 Score=171.27 Aligned_cols=176 Identities=26% Similarity=0.269 Sum_probs=97.1
Q ss_pred CCCEEEecCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEcc
Q 048831 569 DLSELYLDGTYITEVPS-SIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 647 (1051)
Q Consensus 569 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~ 647 (1051)
+|++|++++|.+..+|. .+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 34444444444444433 34444455555554443222222223445555555555544333333344555555555555
Q ss_pred CCCCcCCCc-ccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCcccc
Q 048831 648 GTATRRPPS-SIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAIL 726 (1051)
Q Consensus 648 ~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 726 (1051)
+|.+..++. .+..+++|++|++++|...... +..+..+++|+.|+|++|.+.. ..+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------------------~~~~~~l~~L~~L~L~~n~l~~-~~~ 174 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP----------------------KGVFDKLTSLKELRLYNNQLKR-VPE 174 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccC----------------------HhHccCCcccceeEecCCcCcE-eCh
Confidence 555555443 2345555666665555432210 1225667777777777777753 233
Q ss_pred ccccCCCcCcEEeccCCCceecccc-ccCCCCCCEEeccCCc
Q 048831 727 SDICNLHSLKELYLSGNNFVTLPAS-ISGLFNLKYLELEDCK 767 (1051)
Q Consensus 727 ~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~c~ 767 (1051)
..+..+++|+.|+|++|.++.+|.. +..+++|+.|++++|+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 4467778888888888888877764 5678888888888876
No 79
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=2.2e-19 Score=217.96 Aligned_cols=367 Identities=13% Similarity=0.094 Sum_probs=248.0
Q ss_pred hhhhcCCCCCcEEEecCcccCCc------------------ccccCcCceEEEEcCCCCCCC-CCCC--CCCCeeEEEcC
Q 048831 391 AKAFSLMTNLRFLNIGNVQLPEG------------------LEYLSNKLRLLNWHRYPLKSL-PSNL--QLDKIVEFQMC 449 (1051)
Q Consensus 391 ~~~f~~~~~Lr~L~l~~~~l~~~------------------~~~l~~~Lr~L~l~~~~l~~l-p~~~--~~~~L~~L~l~ 449 (1051)
...+.++++|+.|+++++..... +.....+|+.|+++++.+... +..+ .+++|++|++.
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence 45677889999999988642111 111234799999999876522 1222 47899999999
Q ss_pred cc-Cccc--ccccccCCCCCCEEecCCCCCCCC----CCC-CCCCCccCEEEeeCCC-CC--hhhhhhhccCCCCcEEec
Q 048831 450 YS-HIEE--LWKGIKPLNTLKVMKLSHSENLIK----TPN-FIEVPNLEVLDLKGCT-SL--REIHSSLLRHNKLILLNL 518 (1051)
Q Consensus 450 ~~-~i~~--l~~~~~~l~~L~~L~L~~~~~l~~----~~~-~~~l~~L~~L~L~~c~-~l--~~l~~si~~l~~L~~L~L 518 (1051)
++ .+.. ++.....+++|++|++++|..... ++. ...+++|++|++++|. .+ ..+...+..+++|+.|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 88 5544 444456899999999999873221 222 2378899999999985 11 234444556899999999
Q ss_pred CCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCC------CCcCchhhCCCCCCCEE-EecCccCcccCccccCCC
Q 048831 519 KGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSK------LKKFPAIVASMEDLSEL-YLDGTYITEVPSSIELLT 591 (1051)
Q Consensus 519 ~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~------~~~~p~~~~~l~~L~~L-~L~~~~i~~lp~~i~~l~ 591 (1051)
++|..+. .+|..+..+++|++|++++|.. +..++..+.++++|+.| .+.......+|..+..++
T Consensus 219 ~~~~~~~---------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~ 289 (594)
T 2p1m_B 219 NRAVPLE---------KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289 (594)
T ss_dssp CTTSCHH---------HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred CCCCcHH---------HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence 9974433 3566677899999999887753 23355678899999999 565555556777777899
Q ss_pred CCCEEecCCCCCCCc-ccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCC---------CCcCC-Cccc-c
Q 048831 592 GLELLNLNDCKNLVR-LPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGT---------ATRRP-PSSI-F 659 (1051)
Q Consensus 592 ~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~---------~~~~~-~~~l-~ 659 (1051)
+|+.|++++|..... ++..+..+++|++|++++|.....++.....+++|++|++.++ .+... ...+ .
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 999999999983322 3334668999999999998322233334446899999999542 22211 1112 3
Q ss_pred cccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCC-CCCCCCCEEecc--C----CCCC----Ccccccc
Q 048831 660 LMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSL-SGLCSLSKLDLS--D----CGLR----EGAILSD 728 (1051)
Q Consensus 660 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l-~~l~~L~~L~L~--~----~~l~----~~~~~~~ 728 (1051)
.+++|+.|.+..+...... +..+ ..+++|+.|+++ + +.++ +..++..
T Consensus 370 ~~~~L~~L~~~~~~l~~~~----------------------~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l 427 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAA----------------------LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427 (594)
T ss_dssp HCTTCCEEEEEESCCCHHH----------------------HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred hchhHHHHHHhcCCcCHHH----------------------HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence 4799999977654432110 1112 347899999999 3 3454 2234444
Q ss_pred ccCCCcCcEEeccCCCcee-cccccc-CCCCCCEEeccCCccccc-cC---CCCCCCceEeecCCcc
Q 048831 729 ICNLHSLKELYLSGNNFVT-LPASIS-GLFNLKYLELEDCKRLQS-LP---QLPPNVIKVSVNGCAS 789 (1051)
Q Consensus 729 l~~l~~L~~L~L~~n~l~~-lp~~~~-~l~~L~~L~l~~c~~L~~-lp---~lp~~L~~L~i~~C~~ 789 (1051)
+..+++|+.|+|++ +++. .+..+. .+++|+.|++++|..-.. ++ .-.++|+.|++.+|+-
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 67889999999987 5542 223343 389999999999973211 11 2257899999999974
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=9.4e-17 Score=176.44 Aligned_cols=190 Identities=24% Similarity=0.321 Sum_probs=144.3
Q ss_pred cCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEe
Q 048831 542 SLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLN 621 (1051)
Q Consensus 542 ~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 621 (1051)
.+++|++|++++|. +..+| .+..+++|++|++++|.+..++. +..+++|++|++++|. +..++ .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 46677777777764 33444 46677788888888888877776 7778888888888776 34444 577788888888
Q ss_pred ccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccC
Q 048831 622 LSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALML 701 (1051)
Q Consensus 622 L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 701 (1051)
+++|... .++. +..+++|++|++++|.+..++. +..+++|+.|++++|..... +
T Consensus 114 l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-----------------------~ 167 (308)
T 1h6u_A 114 LTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-----------------------T 167 (308)
T ss_dssp CTTSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-----------------------G
T ss_pred CCCCCCC-Cchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCC-----------------------h
Confidence 8887643 3443 7788888888888888877765 77888888888888764332 2
Q ss_pred CCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCc
Q 048831 702 PSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 702 ~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
+ +..+++|+.|++++|.+.+ ++. +..+++|+.|+|++|.++.++ .+..+++|+.|++++|+
T Consensus 168 ~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 168 P-LANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp G-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred h-hcCCCCCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence 2 6778899999999998864 333 788899999999999999888 48889999999999887
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=1.1e-16 Score=169.20 Aligned_cols=195 Identities=19% Similarity=0.173 Sum_probs=101.9
Q ss_pred eecEEeeeCCCCCCcCchhhCCCCCCCEEEecCcc-CcccCc-cccCCCCCCEEecCCCCCCCccc-ccccCCCCCCEEe
Q 048831 545 CLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTY-ITEVPS-SIELLTGLELLNLNDCKNLVRLP-NSINGLKSLKTLN 621 (1051)
Q Consensus 545 ~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~-i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 621 (1051)
+|++|++++|......+..+..+++|++|++++|. ++.++. .+..+++|++|++++|..+..+| ..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666655433333355666666666666664 665554 45566666666666522333333 3455666666666
Q ss_pred ccCCCCCCcCCcccCCCCCcc---EEEccCC-CCcCCCc-ccccccCCc-EEEccCCCCCCCCCcccCCccccccccCCC
Q 048831 622 LSGCCKLENVPDTLGQVESLE---ELDISGT-ATRRPPS-SIFLMKNLK-TLSFSGCNGPPSTASCHLNLPFNLMRKSSC 695 (1051)
Q Consensus 622 L~~c~~l~~lp~~l~~l~~L~---~L~l~~~-~~~~~~~-~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 695 (1051)
+++|.. ..+|. +..+++|+ .|++++| .+..+|. .+..+++|+ .|++++|.....
T Consensus 112 l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i------------------ 171 (239)
T 2xwt_C 112 IFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV------------------ 171 (239)
T ss_dssp EEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE------------------
T ss_pred CCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc------------------
Confidence 666543 23444 55555555 6666666 5555543 244555555 555555443210
Q ss_pred CccccCCCCCCCCCCCEEeccCCC-CCCccccccccCC-CcCcEEeccCCCceeccccccCCCCCCEEeccCCc
Q 048831 696 PVALMLPSLSGLCSLSKLDLSDCG-LREGAILSDICNL-HSLKELYLSGNNFVTLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 696 ~~~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~~l~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
+......++|+.|++++|. +. ...+..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++.
T Consensus 172 -----~~~~~~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 172 -----QGYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp -----CTTTTTTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred -----CHhhcCCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 1111111456666666663 43 1223344555 5666666666666655544 45556666655554
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=1.4e-16 Score=168.44 Aligned_cols=209 Identities=18% Similarity=0.291 Sum_probs=167.1
Q ss_pred CCCCCcCchhhCCCCCCCEEEecCccCcccCc-cccCCCCCCEEecCCCCCCCcccc-cccCCCCCCEEeccCCCCCCcC
Q 048831 554 CSKLKKFPAIVASMEDLSELYLDGTYITEVPS-SIELLTGLELLNLNDCKNLVRLPN-SINGLKSLKTLNLSGCCKLENV 631 (1051)
Q Consensus 554 c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~c~~l~~l 631 (1051)
|..+..+|. + ..+|++|++++|.++.+|. .+..+++|++|++++|..+..++. .+.++++|++|++++|+.++.+
T Consensus 20 c~~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 334777777 3 3489999999999999987 689999999999999975666654 7899999999999995556555
Q ss_pred C-cccCCCCCccEEEccCCCCcCCCcccccccCCc---EEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCC
Q 048831 632 P-DTLGQVESLEELDISGTATRRPPSSIFLMKNLK---TLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGL 707 (1051)
Q Consensus 632 p-~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l 707 (1051)
+ ..+..+++|++|++++|.+..+|. +..+++|+ .|++++|......+ +..+.++
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~---------------------~~~~~~l 154 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP---------------------VNAFQGL 154 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC---------------------TTTTTTT
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcC---------------------cccccch
Confidence 5 578899999999999999999887 77888888 99999983222210 2347889
Q ss_pred CCCC-EEeccCCCCCCccccccccCCCcCcEEeccCC-Cceeccc-cccCC-CCCCEEeccCCccccccCC-CCCCCceE
Q 048831 708 CSLS-KLDLSDCGLREGAILSDICNLHSLKELYLSGN-NFVTLPA-SISGL-FNLKYLELEDCKRLQSLPQ-LPPNVIKV 782 (1051)
Q Consensus 708 ~~L~-~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n-~l~~lp~-~~~~l-~~L~~L~l~~c~~L~~lp~-lp~~L~~L 782 (1051)
++|+ .|++++|.+. .+|......++|+.|++++| .++.+|. .+..+ ++|+.|++++|+ ++.+|. ..++|+.|
T Consensus 155 ~~L~~~L~l~~n~l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L 231 (239)
T 2xwt_C 155 CNETLTLKLYNNGFT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKEL 231 (239)
T ss_dssp BSSEEEEECCSCCCC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEE
T ss_pred hcceeEEEcCCCCCc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCcee
Confidence 9999 9999999986 36655444589999999999 5998865 56888 999999999986 667775 46789999
Q ss_pred eecCCccc
Q 048831 783 SVNGCASL 790 (1051)
Q Consensus 783 ~i~~C~~L 790 (1051)
.+.++..|
T Consensus 232 ~l~~~~~l 239 (239)
T 2xwt_C 232 IARNTWTL 239 (239)
T ss_dssp ECTTC---
T ss_pred eccCccCC
Confidence 99887654
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=2.1e-17 Score=184.85 Aligned_cols=173 Identities=22% Similarity=0.256 Sum_probs=89.1
Q ss_pred eeEEEcCccCcccccccccCC--CCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCCChh-hhhhhccCCCCcEEecC
Q 048831 443 IVEFQMCYSHIEELWKGIKPL--NTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTSLRE-IHSSLLRHNKLILLNLK 519 (1051)
Q Consensus 443 L~~L~l~~~~i~~l~~~~~~l--~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~-l~~si~~l~~L~~L~L~ 519 (1051)
++.++++++.+. +..+..+ ++++.|+++++......+.+.++++|++|++++|..... ++..+..+++|+.|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 345555555443 2334444 677777777776555566666778888888887753333 55556666666666665
Q ss_pred CCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCC--cCchhhCCCCCCCEEEecCc-cCcc--cCccccCCC-CC
Q 048831 520 GCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLK--KFPAIVASMEDLSELYLDGT-YITE--VPSSIELLT-GL 593 (1051)
Q Consensus 520 ~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~--~~p~~~~~l~~L~~L~L~~~-~i~~--lp~~i~~l~-~L 593 (1051)
+|. +. ...|..++.+++|++|++++|..+. .++..+..+++|++|++++| .++. ++..+..++ +|
T Consensus 127 ~~~-l~--------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 127 GLR-LS--------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp TCB-CC--------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred Ccc-cC--------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 542 11 0123334445555555555553333 24444555555555555555 4442 344444455 55
Q ss_pred CEEecCCCC-CC--CcccccccCCCCCCEEeccCCC
Q 048831 594 ELLNLNDCK-NL--VRLPNSINGLKSLKTLNLSGCC 626 (1051)
Q Consensus 594 ~~L~L~~~~-~l--~~lp~~i~~L~~L~~L~L~~c~ 626 (1051)
++|++++|. .+ ..+|..+..+++|+.|++++|.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 555555542 11 2233333344444444444443
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=3.5e-16 Score=169.39 Aligned_cols=220 Identities=17% Similarity=0.164 Sum_probs=152.2
Q ss_pred EEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccc-cccCCCCCCEEecCCCCCCCCCC-CCCCCCccCEEEeeCCCCCh
Q 048831 424 LNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWK-GIKPLNTLKVMKLSHSENLIKTP-NFIEVPNLEVLDLKGCTSLR 501 (1051)
Q Consensus 424 L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~L~~c~~l~ 501 (1051)
.+..+..+..+|..+ +.+|++|++++|.+..++. .+..+++|++|++++|......+ .|.++++|++|+|++|....
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 344445556666654 2467777777777776655 46677777777777775443333 36777777777777765433
Q ss_pred hhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCcc-ccccCceecEEeeeCCCCCC-cCchhhCCCCCCCEEEecCcc
Q 048831 502 EIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPV-TISSLKCLRTLKLSGCSKLK-KFPAIVASMEDLSELYLDGTY 579 (1051)
Q Consensus 502 ~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~~~-~~p~~~~~l~~L~~L~L~~~~ 579 (1051)
..+..+..+++|+.|+++++. +..++. .+..+++|++|++++|.... .+|..+..+++|++|++++|.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~----------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETN----------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSC----------CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cChhhhcCCccccEEECCCCC----------ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 334567777788888877642 222222 36678889999999887655 368888999999999999999
Q ss_pred CcccCc-cccCCCCCC----EEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCC
Q 048831 580 ITEVPS-SIELLTGLE----LLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRP 654 (1051)
Q Consensus 580 i~~lp~-~i~~l~~L~----~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 654 (1051)
++.++. .+..+++|+ .|++++|.. ..+|.......+|+.|++++|......+..+..+++|+.|++++|.+...
T Consensus 161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEECGGGGHHHHTCTTCCEEEECCSSCC-CEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCcCCHHHhhhhhhccccceeeecCCCcc-cccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 987753 566666666 889998764 44554555556899999999875544444578899999999999987654
Q ss_pred C
Q 048831 655 P 655 (1051)
Q Consensus 655 ~ 655 (1051)
.
T Consensus 240 c 240 (276)
T 2z62_A 240 C 240 (276)
T ss_dssp T
T ss_pred C
Confidence 3
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=7.1e-16 Score=167.62 Aligned_cols=198 Identities=21% Similarity=0.215 Sum_probs=136.1
Q ss_pred CCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecC
Q 048831 440 LDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLK 519 (1051)
Q Consensus 440 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~ 519 (1051)
+.+++++++.+++++.+|.++. ++|+.|++++|..... .+..+..+++|+.|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~-----------------------~~~~~~~l~~L~~L~L~ 63 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTF-----------------------SLATLMPYTRLTQLNLD 63 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEE-----------------------EGGGGTTCTTCCEEECT
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCcc-----------------------CHHHhhcCCCCCEEECC
Confidence 4455555665555555554442 3455555555443222 23344555555555555
Q ss_pred CCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccC-ccccCCCCCCEEec
Q 048831 520 GCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVP-SSIELLTGLELLNL 598 (1051)
Q Consensus 520 ~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L 598 (1051)
++. +..+|.. +.+++|++|++++|. +..+|..+..+++|++|++++|.++.+| ..+..+++|+.|++
T Consensus 64 ~n~----------l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 64 RAE----------LTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp TSC----------CCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred CCc----------cCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 421 1222221 347778888888864 4577777888888888888888888886 45788889999999
Q ss_pred CCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCC
Q 048831 599 NDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNG 674 (1051)
Q Consensus 599 ~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 674 (1051)
++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.+..+|..+..+.+|+.|++.+|+.
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 8887655445557788999999999886554333456789999999999999999999998889999999998864
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.2e-15 Score=164.45 Aligned_cols=199 Identities=20% Similarity=0.231 Sum_probs=110.3
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccc-cccCCCCCCEEecCCCCCCCCCCC-CCCCCccCEEEeeCC
Q 048831 420 KLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWK-GIKPLNTLKVMKLSHSENLIKTPN-FIEVPNLEVLDLKGC 497 (1051)
Q Consensus 420 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~L~~c 497 (1051)
..+.++++++.++.+|..+. .++++|+++++.+..++. .+..+++|++|++++|......+. |.++++|++|+|++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 45666777777777766543 556666666666666554 355566666666665543322222 344555555555543
Q ss_pred CCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecC
Q 048831 498 TSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDG 577 (1051)
Q Consensus 498 ~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~ 577 (1051)
. +..++. ..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 96 ~-l~~~~~--------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 96 K-LQALPI--------------------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp C-CCCCCT--------------------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred c-CCcCCH--------------------------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC
Confidence 2 111111 1233456666666666655444445566666677777776
Q ss_pred ccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCc
Q 048831 578 TYITEVPSS-IELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATR 652 (1051)
Q Consensus 578 ~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 652 (1051)
|.+..+|.. +..+++|+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|.+.
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 666666554 566666666666666544333344556666666666665443322334555666666666666543
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=2.5e-16 Score=169.91 Aligned_cols=200 Identities=18% Similarity=0.166 Sum_probs=92.6
Q ss_pred CceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEec
Q 048831 543 LKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNL 622 (1051)
Q Consensus 543 l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 622 (1051)
+++|+.|++++|. +..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|......+..+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~-i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCC-ccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 4445555555443 22222 2444555555555555555442 3455555555555555433333333455555555555
Q ss_pred cCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcc-cccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccC
Q 048831 623 SGCCKLENVPDTLGQVESLEELDISGTATRRPPSS-IFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALML 701 (1051)
Q Consensus 623 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 701 (1051)
++|......+..++.+++|++|++++|.+..++.. +..+++|+.|++++|...... +
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~ 174 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP----------------------E 174 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------T
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC----------------------H
Confidence 55544333333345555555555555555544432 244455555555544322110 1
Q ss_pred CCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCccccccCC
Q 048831 702 PSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQSLPQ 774 (1051)
Q Consensus 702 ~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~~lp~ 774 (1051)
..+.++++|+.|++++|++.. ..+..+..+++|+.|++++|.+. ..+++|+.|+++.|...+.+|.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred HHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccC
Confidence 123445555555555555532 22333445555555555555433 2234455555555544444443
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=2.8e-16 Score=172.65 Aligned_cols=178 Identities=19% Similarity=0.271 Sum_probs=127.3
Q ss_pred cccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCE
Q 048831 540 ISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKT 619 (1051)
Q Consensus 540 l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 619 (1051)
+..+++|++|++++|. +..++. +..+++|++|++++|.++.++ .+..+++|+.|++++|.. ..+|. +..+++|+.
T Consensus 59 ~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCE
T ss_pred hhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCE
Confidence 4446666777776664 334444 667777777777777777665 467777777777777654 33443 677777888
Q ss_pred EeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccc
Q 048831 620 LNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVAL 699 (1051)
Q Consensus 620 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 699 (1051)
|++++|... .++. ++.+++|+.|++++|.+..++. +..+++|+.|++++|.....
T Consensus 134 L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~---------------------- 188 (308)
T 1h6u_A 134 LYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI---------------------- 188 (308)
T ss_dssp EECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC----------------------
T ss_pred EECCCCccC-cCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC----------------------
Confidence 888777543 3333 6777888888888888777766 77788888888888765332
Q ss_pred cCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccc
Q 048831 700 MLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASI 752 (1051)
Q Consensus 700 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~ 752 (1051)
+ .+..+++|+.|+|++|.+.+ ++ .+..+++|+.|++++|.++..|..+
T Consensus 189 -~-~l~~l~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 189 -S-PLASLPNLIEVHLKNNQISD--VS-PLANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp -G-GGGGCTTCCEEECTTSCCCB--CG-GGTTCTTCCEEEEEEEEEECCCEEC
T ss_pred -h-hhcCCCCCCEEEccCCccCc--cc-cccCCCCCCEEEccCCeeecCCeee
Confidence 1 26678899999999999874 33 3789999999999999998877543
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=2.1e-16 Score=170.54 Aligned_cols=164 Identities=20% Similarity=0.192 Sum_probs=86.7
Q ss_pred hCCCCCCCEEEecCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCcc
Q 048831 564 VASMEDLSELYLDGTYITEVPSS-IELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLE 642 (1051)
Q Consensus 564 ~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~ 642 (1051)
+..+++|++|++++|.++.++.. +..+++|++|++++|......+..+..+++|++|++++|......+..++.+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 34444444444444444444332 34444555555554443333333344555555555555533332333345555555
Q ss_pred EEEccCCCCcCCCcc-cccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCC
Q 048831 643 ELDISGTATRRPPSS-IFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLR 721 (1051)
Q Consensus 643 ~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~ 721 (1051)
.|++++|.+..++.. +..+++|+.|++++|...... +..+..+++|+.|++++|.+.
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP----------------------DGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC----------------------TTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC----------------------HHHHhCCcCCCEEEccCCCcc
Confidence 555555555554433 345566666666655433211 223566777888888887654
Q ss_pred CccccccccCCCcCcEEeccCCCce-eccccccCCCC
Q 048831 722 EGAILSDICNLHSLKELYLSGNNFV-TLPASISGLFN 757 (1051)
Q Consensus 722 ~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~ 757 (1051)
+.+++|+.|+++.|.++ .+|.+++.++.
T Consensus 219 --------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 219 --------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp --------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred --------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 34567888888887776 57776665543
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=1.3e-17 Score=186.40 Aligned_cols=183 Identities=22% Similarity=0.271 Sum_probs=104.8
Q ss_pred cccCceecEEeeeCCCCCCc-CchhhCCCCCCCEEEecCccCc-ccCccccCCCCCCEEecCCCCCCC--cccccccCCC
Q 048831 540 ISSLKCLRTLKLSGCSKLKK-FPAIVASMEDLSELYLDGTYIT-EVPSSIELLTGLELLNLNDCKNLV--RLPNSINGLK 615 (1051)
Q Consensus 540 l~~l~~L~~L~Ls~c~~~~~-~p~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~--~lp~~i~~L~ 615 (1051)
+..+++|++|++++|..... +|..+..+++|++|++++|.+. ..|..+..+++|++|++++|..+. .++..+.+++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 33466667777766654433 5666666677777777766665 445556666777777777664333 2455566666
Q ss_pred CCCEEeccCCCCCCc--CCcccCCCC-CccEEEccCCCC----cCCCcccccccCCcEEEccCCCCCCCCCcccCCcccc
Q 048831 616 SLKTLNLSGCCKLEN--VPDTLGQVE-SLEELDISGTAT----RRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFN 688 (1051)
Q Consensus 616 ~L~~L~L~~c~~l~~--lp~~l~~l~-~L~~L~l~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 688 (1051)
+|++|++++|..++. ++..+..++ +|++|++++|.+ ..++..+..+++|+.|++++|......
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---------- 238 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND---------- 238 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG----------
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH----------
Confidence 777777776633332 455556666 666777666632 334455556666666666666532210
Q ss_pred ccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCC
Q 048831 689 LMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGN 743 (1051)
Q Consensus 689 ~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n 743 (1051)
.+..+..+++|+.|++++|..........+..+++|+.|++++|
T Consensus 239 -----------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 239 -----------CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp -----------GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred -----------HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 02234555666666666663111111224556666666666666
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=175.24 Aligned_cols=197 Identities=20% Similarity=0.209 Sum_probs=124.1
Q ss_pred ceecEEeeeCCCCCCcCchhh--CCCCCCCEEEecCccCccc-C----ccccCCCCCCEEecCCCCCCCcccccccCCCC
Q 048831 544 KCLRTLKLSGCSKLKKFPAIV--ASMEDLSELYLDGTYITEV-P----SSIELLTGLELLNLNDCKNLVRLPNSINGLKS 616 (1051)
Q Consensus 544 ~~L~~L~Ls~c~~~~~~p~~~--~~l~~L~~L~L~~~~i~~l-p----~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~ 616 (1051)
++|++|++++|...+..|..+ ..+++|++|++++|.+... + ..+..+++|++|++++|......|..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555555555544 5556666666666665532 1 12345666666666666655555556666666
Q ss_pred CCEEeccCCCCCCc--C--CcccCCCCCccEEEccCCCCcCCCcc----cccccCCcEEEccCCCCCCCCCcccCCcccc
Q 048831 617 LKTLNLSGCCKLEN--V--PDTLGQVESLEELDISGTATRRPPSS----IFLMKNLKTLSFSGCNGPPSTASCHLNLPFN 688 (1051)
Q Consensus 617 L~~L~L~~c~~l~~--l--p~~l~~l~~L~~L~l~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 688 (1051)
|++|++++|...+. + +..++.+++|++|++++|.+..++.. +..+++|++|++++|......
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~---------- 240 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATV---------- 240 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC----------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccc----------
Confidence 77777766654431 1 22235667777777777776555432 355677777777777654331
Q ss_pred ccccCCCCccccCCCCCC---CCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccC
Q 048831 689 LMRKSSCPVALMLPSLSG---LCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELED 765 (1051)
Q Consensus 689 ~l~~~~~~~~~~~~~l~~---l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~ 765 (1051)
|+.+.. +++|+.|+|++|++. .+|..+. ++|+.|+|++|+++.+|. +..+++|+.|++++
T Consensus 241 ------------p~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 241 ------------NPSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp ------------CSCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSS
T ss_pred ------------hhhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcC
Confidence 222333 368888888888886 3666553 788888998888888875 67788888888888
Q ss_pred Cc
Q 048831 766 CK 767 (1051)
Q Consensus 766 c~ 767 (1051)
|+
T Consensus 304 N~ 305 (310)
T 4glp_A 304 NP 305 (310)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=1.1e-15 Score=171.49 Aligned_cols=217 Identities=21% Similarity=0.268 Sum_probs=136.5
Q ss_pred eEEEEcCCCCCCCCCCCCCCCeeEEEcCccCccccccc-ccCCCCCCEEecCCCCCCCCCCC--CCCCCccCEEEeeCCC
Q 048831 422 RLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKG-IKPLNTLKVMKLSHSENLIKTPN--FIEVPNLEVLDLKGCT 498 (1051)
Q Consensus 422 r~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~L~~~~~l~~~~~--~~~l~~L~~L~L~~c~ 498 (1051)
+.++.+++.++++|..+ +.++++|++++|+++.++.+ +..+++|++|+|++|+....+|. |.++++|+++.+.++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 56778888899999877 57899999999999999875 78899999999999987666553 7788888876666656
Q ss_pred CChhhh-hhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchh-hCCC-CCCCEEEe
Q 048831 499 SLREIH-SSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAI-VASM-EDLSELYL 575 (1051)
Q Consensus 499 ~l~~l~-~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~-~~~l-~~L~~L~L 575 (1051)
.+..++ ..+..+++|++|+++++. +..++.. .+.....+..|++.++..+..++.. +..+ ..++.|++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~--------~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDV--------HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCC--------TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred cccccCchhhhhccccccccccccc-cccCCch--------hhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 666664 345667777777776632 2222211 1223445566666665555554432 2222 23555555
Q ss_pred cCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCc-ccCCCCCccEEEccCCCCcCC
Q 048831 576 DGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISGTATRRP 654 (1051)
Q Consensus 576 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~ 654 (1051)
++|.++++|..+.. ..+|+.|++.+++.++.+|. .+..+++|++|++++|.+..+
T Consensus 162 ~~N~i~~i~~~~f~------------------------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 162 NKNGIQEIHNSAFN------------------------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp CSSCCCEECTTSST------------------------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred ccccccCCChhhcc------------------------ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 55555555444433 44455555555555555553 356666677777777776666
Q ss_pred CcccccccCCcEEEccCCCC
Q 048831 655 PSSIFLMKNLKTLSFSGCNG 674 (1051)
Q Consensus 655 ~~~l~~l~~L~~L~l~~~~~ 674 (1051)
|... +.+|+.|.+.++..
T Consensus 218 p~~~--~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 218 PSYG--LENLKKLRARSTYN 235 (350)
T ss_dssp CSSS--CTTCCEEECTTCTT
T ss_pred Chhh--hccchHhhhccCCC
Confidence 6532 45666666655543
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=7.9e-18 Score=192.01 Aligned_cols=185 Identities=18% Similarity=0.177 Sum_probs=93.8
Q ss_pred CCCCCCCEEEecCccCcc-----cCccccCCCCCCEEecCCCCCCCc----ccccccCC---------CCCCEEeccCCC
Q 048831 565 ASMEDLSELYLDGTYITE-----VPSSIELLTGLELLNLNDCKNLVR----LPNSINGL---------KSLKTLNLSGCC 626 (1051)
Q Consensus 565 ~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~----lp~~i~~L---------~~L~~L~L~~c~ 626 (1051)
..+++|++|+|++|.+.. +|..+..+++|++|+|++|..... ++..+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 344455555555554443 344445555555555555443211 11222222 455555555554
Q ss_pred CC-CcCC---cccCCCCCccEEEccCCCCc------CCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCC
Q 048831 627 KL-ENVP---DTLGQVESLEELDISGTATR------RPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCP 696 (1051)
Q Consensus 627 ~l-~~lp---~~l~~l~~L~~L~l~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 696 (1051)
.. ..++ ..+..+++|++|++++|.+. -.+..+..+++|+.|++++|..... .
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~------------------g 232 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL------------------G 232 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH------------------H
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH------------------H
Confidence 33 2222 23444555555555555544 1122455555666666655542100 0
Q ss_pred ccccCCCCCCCCCCCEEeccCCCCCCc---cccccc--cCCCcCcEEeccCCCcee-----ccccc-cCCCCCCEEeccC
Q 048831 697 VALMLPSLSGLCSLSKLDLSDCGLREG---AILSDI--CNLHSLKELYLSGNNFVT-----LPASI-SGLFNLKYLELED 765 (1051)
Q Consensus 697 ~~~~~~~l~~l~~L~~L~L~~~~l~~~---~~~~~l--~~l~~L~~L~L~~n~l~~-----lp~~~-~~l~~L~~L~l~~ 765 (1051)
...++..+..+++|+.|+|++|.+.+. .++..+ +.+++|+.|+|++|.++. +|..+ .++++|+.|++++
T Consensus 233 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 011133355566677777777766532 133444 336777777777777775 66666 5567777777777
Q ss_pred Cc
Q 048831 766 CK 767 (1051)
Q Consensus 766 c~ 767 (1051)
|+
T Consensus 313 N~ 314 (386)
T 2ca6_A 313 NR 314 (386)
T ss_dssp SB
T ss_pred Cc
Confidence 65
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=3.5e-15 Score=167.73 Aligned_cols=295 Identities=14% Similarity=0.128 Sum_probs=172.6
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhh--cCCCHH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFE--KEGSVI 96 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~--~~~~~~ 96 (1051)
.++..+..|+||+.++++|.+++..+ +++.|+|++|+|||||+++++++.. .+|+ ++..... ......
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILI-DCRELYAERGHITRE 75 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEE-EHHHHHHTTTCBCHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEE-EeecccccccCCCHH
Confidence 45556788999999999999998652 6899999999999999999998751 3343 4443220 000113
Q ss_pred HHHHHHHHHHhc---------------cCCC--ccccchhhHHHHHHhhCC-CeEEEEEeCCCCHH--------H-HHHH
Q 048831 97 SLQKQLLSNLLK---------------LGDI--SIWHVDDGINIIGSRLRQ-QKVLLVIDDVADVE--------Q-LQSL 149 (1051)
Q Consensus 97 ~l~~~ll~~l~~---------------~~~~--~~~~~~~~~~~i~~~l~~-k~~LlVlDdv~~~~--------~-~~~l 149 (1051)
.+...+...+.. .... ......+....+.+..+. ++++|||||++... + +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 333444333221 0000 012233334444444432 48999999996532 2 2222
Q ss_pred hcCCCCCCCCCEEEEEeCChhhhHhh----C----C--CCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHH
Q 048831 150 AGKRDWFGLGSRILITTRDKQLLVAH----E----V--DEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVL 219 (1051)
Q Consensus 150 ~~~~~~~~~gs~IiiTTR~~~~~~~~----~----~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~ 219 (1051)
..... ..++.++|+|++........ . . .....+++.+|+.+|+.+++............ .+.+.+|+
T Consensus 156 ~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~--~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP--ENEIEEAV 232 (350)
T ss_dssp HHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHH
T ss_pred HHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Confidence 22111 12478899999876532211 1 1 11237999999999999999865322221111 25678999
Q ss_pred HhcCCCchHHHHHHHHhcC-CCHHHHHHHHHHhhcCCCchHHHHHHHhccCC---ChhcccceeeeecccCCCCHHHHHH
Q 048831 220 NYASGLPLALKVLGSFLIG-RSVDQWRSALERLKRDPSNKIMSILQISFDGL---QDSEKKIFLDVACFFKQKNRDYVTK 295 (1051)
Q Consensus 220 ~~~~G~PLal~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~a~f~~~~~~~~l~~ 295 (1051)
+.++|+|+++..++..+.. .+...+. ..+.. .+...+.-.+..+ ++..+.++..+|+ .......+..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~ 303 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRD 303 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHH---HHHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999999876432 2322221 11111 1111111112222 6788888888887 3345556655
Q ss_pred HHhhc--CCC---cchhhhHhhccCceeEeCCCce-ehhHHHHHHHH
Q 048831 296 ILEGC--GFF---PVIGIEVLIERSLLTVDDYNTL-GMHDLLQELGQ 336 (1051)
Q Consensus 296 ~~~~~--g~~---~~~~l~~L~~~sLi~~~~~~~~-~mHdll~~~~~ 336 (1051)
.+... +.. ....++.|.+.++|.... +.| ..|++++++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 54221 222 134588999999998763 444 45888887753
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=4.9e-17 Score=185.44 Aligned_cols=241 Identities=18% Similarity=0.158 Sum_probs=175.5
Q ss_pred CCCCCCC-CCCCeeEEEcCccCccc-----ccccccCCCCCCEEecCCCCCC---CCCCC--------CCCCCccCEEEe
Q 048831 432 KSLPSNL-QLDKIVEFQMCYSHIEE-----LWKGIKPLNTLKVMKLSHSENL---IKTPN--------FIEVPNLEVLDL 494 (1051)
Q Consensus 432 ~~lp~~~-~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~l---~~~~~--------~~~l~~L~~L~L 494 (1051)
..++..+ .+++|++|++++|.+.. ++..+..+++|++|+|++|..- ..+|. +..+++|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3444444 46677888888877764 4445777888888888887422 12221 367888999999
Q ss_pred eCCCCCh----hhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccC---------ceecEEeeeCCCCC-CcC
Q 048831 495 KGCTSLR----EIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSL---------KCLRTLKLSGCSKL-KKF 560 (1051)
Q Consensus 495 ~~c~~l~----~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l---------~~L~~L~Ls~c~~~-~~~ 560 (1051)
++|.... .++..+..+++|+.|+|++|.- ... ....++..+..+ ++|++|+|++|... ..+
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~----~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQ----AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHH----HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHH----HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 8876444 4777888899999999988632 100 001223333344 89999999998765 345
Q ss_pred c---hhhCCCCCCCEEEecCccCc------ccCccccCCCCCCEEecCCCCCC----CcccccccCCCCCCEEeccCCCC
Q 048831 561 P---AIVASMEDLSELYLDGTYIT------EVPSSIELLTGLELLNLNDCKNL----VRLPNSINGLKSLKTLNLSGCCK 627 (1051)
Q Consensus 561 p---~~~~~l~~L~~L~L~~~~i~------~lp~~i~~l~~L~~L~L~~~~~l----~~lp~~i~~L~~L~~L~L~~c~~ 627 (1051)
| ..+..+++|++|++++|.+. -+|..+..+++|+.|+|++|... ..+|..+..+++|++|+|++|..
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 5 46678889999999999988 23447889999999999998753 66788888999999999999876
Q ss_pred CCc----CCccc--CCCCCccEEEccCCCCcC-----CCccc-ccccCCcEEEccCCCCCCC
Q 048831 628 LEN----VPDTL--GQVESLEELDISGTATRR-----PPSSI-FLMKNLKTLSFSGCNGPPS 677 (1051)
Q Consensus 628 l~~----lp~~l--~~l~~L~~L~l~~~~~~~-----~~~~l-~~l~~L~~L~l~~~~~~~~ 677 (1051)
... ++..+ +.+++|++|++++|.+.. +|..+ .++++|+.|++++|.....
T Consensus 257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 543 45666 448999999999999887 77777 5689999999999876543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=5.2e-15 Score=165.88 Aligned_cols=221 Identities=18% Similarity=0.183 Sum_probs=109.0
Q ss_pred EEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCc-cccCCCCCCEEecCCCCCCCcccc-cccCCCCCCEEeccCC
Q 048831 548 TLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPS-SIELLTGLELLNLNDCKNLVRLPN-SINGLKSLKTLNLSGC 625 (1051)
Q Consensus 548 ~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~c 625 (1051)
+++.+++ .+..+|..+ .+++++|+|++|.|+.+|. .+.++++|++|+|++|...+.+|. .+.++++|+.+.+.++
T Consensus 13 ~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4444442 344555433 2456666666666666654 356666666666666665555543 3455666555444433
Q ss_pred CCCCcC-CcccCCCCCccEEEccCCCCcCCCc-ccccccCCcEEEccCCCCCCCCCccc---CCccccccccCCCCcccc
Q 048831 626 CKLENV-PDTLGQVESLEELDISGTATRRPPS-SIFLMKNLKTLSFSGCNGPPSTASCH---LNLPFNLMRKSSCPVALM 700 (1051)
Q Consensus 626 ~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 700 (1051)
+.+..+ |..+..+++|++|++++|.+..+|. ......++..|++.++......+... ....+..+.+..+....+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 334333 4455666666666666666655543 22344455556655544332211100 000111122222222233
Q ss_pred CCCCCCCCCCCEEeccCCCCCCcccc-ccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCccccccCC
Q 048831 701 LPSLSGLCSLSKLDLSDCGLREGAIL-SDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQSLPQ 774 (1051)
Q Consensus 701 ~~~l~~l~~L~~L~L~~~~l~~~~~~-~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~~lp~ 774 (1051)
++......+|+.|++++++... .+| ..+..+++|+.|+|++|+++.+|.. .+.+|+.|.+.+|..++.+|.
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred ChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC
Confidence 3333344556666665433222 233 2345566666666666666666542 355555666555555655554
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=8.2e-15 Score=155.96 Aligned_cols=173 Identities=21% Similarity=0.216 Sum_probs=102.3
Q ss_pred CCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCC
Q 048831 570 LSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGT 649 (1051)
Q Consensus 570 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~ 649 (1051)
.++++++++.++.+|..+. ++|+.|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3444444455555554433 34555555555444444444555555555555555444444444555566666666666
Q ss_pred CCcCCCc-ccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCcccccc
Q 048831 650 ATRRPPS-SIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSD 728 (1051)
Q Consensus 650 ~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~ 728 (1051)
.+..++. .+..+++|++|++++|...... +..+.++++|+.|+|++|.+.. ..+..
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l~~L~~L~Ls~N~l~~-~~~~~ 150 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLP----------------------SGVFDRLTKLKELRLNTNQLQS-IPAGA 150 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcC----------------------hhHhccCCcccEEECcCCcCCc-cCHHH
Confidence 6555543 3455566666666655433210 2235667778888888887753 23335
Q ss_pred ccCCCcCcEEeccCCCceeccc-cccCCCCCCEEeccCCc
Q 048831 729 ICNLHSLKELYLSGNNFVTLPA-SISGLFNLKYLELEDCK 767 (1051)
Q Consensus 729 l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~c~ 767 (1051)
++.+++|+.|+|++|.++.+|. .+..+++|+.|++++|+
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 7778888888888888887765 56778888888888876
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=165.89 Aligned_cols=221 Identities=17% Similarity=0.132 Sum_probs=162.0
Q ss_pred CCCeeEEEcCccCccc-----ccccccCCCCCCEEecCCCCCCCCCCC-C--CCCCccCEEEeeCCCCChhhh----hhh
Q 048831 440 LDKIVEFQMCYSHIEE-----LWKGIKPLNTLKVMKLSHSENLIKTPN-F--IEVPNLEVLDLKGCTSLREIH----SSL 507 (1051)
Q Consensus 440 ~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~l~~~~~-~--~~l~~L~~L~L~~c~~l~~l~----~si 507 (1051)
...++.+.+.+..+.. +.. ...+++|+.|++++|......|. + ..+++|++|+|++|......+ ..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3445566666555431 111 22345688888888876655554 4 788889999998876443322 344
Q ss_pred ccCCCCcEEecCCCCCCCccCCCCCCCCC-ccccccCceecEEeeeCCCCCCc--Cc--hhhCCCCCCCEEEecCccCcc
Q 048831 508 LRHNKLILLNLKGCTSLTTLPDCKNLSSL-PVTISSLKCLRTLKLSGCSKLKK--FP--AIVASMEDLSELYLDGTYITE 582 (1051)
Q Consensus 508 ~~l~~L~~L~L~~c~~l~~l~~~~~l~~l-p~~l~~l~~L~~L~Ls~c~~~~~--~p--~~~~~l~~L~~L~L~~~~i~~ 582 (1051)
..+++|+.|++++|.- ..+ |..++.+++|++|+|++|...+. ++ ..+..+++|++|++++|.++.
T Consensus 142 ~~~~~L~~L~Ls~n~l----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 211 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHS----------PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET 211 (310)
T ss_dssp TBCSCCCEEEEECCSS----------CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred hhccCCCEEEeeCCCc----------chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc
Confidence 5788899999987532 222 24567789999999999876543 32 234688899999999999987
Q ss_pred cCcc----ccCCCCCCEEecCCCCCCCcccccccCC---CCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCC
Q 048831 583 VPSS----IELLTGLELLNLNDCKNLVRLPNSINGL---KSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPP 655 (1051)
Q Consensus 583 lp~~----i~~l~~L~~L~L~~~~~l~~lp~~i~~L---~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~ 655 (1051)
++.. ++.+++|++|++++|......|..+..+ ++|++|++++|... .+|..+. ++|++|++++|.+..+|
T Consensus 212 l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 212 PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC
T ss_pred hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc
Confidence 6652 5788999999999998777768777766 69999999998655 7787764 79999999999999886
Q ss_pred cccccccCCcEEEccCCCCC
Q 048831 656 SSIFLMKNLKTLSFSGCNGP 675 (1051)
Q Consensus 656 ~~l~~l~~L~~L~l~~~~~~ 675 (1051)
. +..+++|+.|++++|+..
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTS
T ss_pred h-hhhCCCccEEECcCCCCC
Confidence 5 678899999999998754
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=2.8e-14 Score=151.80 Aligned_cols=155 Identities=23% Similarity=0.242 Sum_probs=88.0
Q ss_pred CCCEEEecCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEcc
Q 048831 569 DLSELYLDGTYITEVPS-SIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 647 (1051)
Q Consensus 569 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~ 647 (1051)
+|+.|++++|.+..++. .+..+++|++|++++|......|..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 45555555555554433 35555555555555554444444445555556666665555444334445566666666666
Q ss_pred CCCCcCCCcc-cccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCcccc
Q 048831 648 GTATRRPPSS-IFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAIL 726 (1051)
Q Consensus 648 ~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 726 (1051)
+|.+..++.. +..+++|+.|++++|...... +..+.++++|+.|+|++|++.. ..+
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------------------~~~~~~l~~L~~L~L~~N~l~~-~~~ 172 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP----------------------AGAFDKLTNLQTLSLSTNQLQS-VPH 172 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccC----------------------HHHcCcCcCCCEEECCCCcCCc-cCH
Confidence 6666655543 355666666666665433210 2235666777777777777652 333
Q ss_pred ccccCCCcCcEEeccCCCce
Q 048831 727 SDICNLHSLKELYLSGNNFV 746 (1051)
Q Consensus 727 ~~l~~l~~L~~L~L~~n~l~ 746 (1051)
..+..+++|+.|+|++|.+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBC
T ss_pred HHHhCCCCCCEEEeeCCcee
Confidence 45667777777777777765
No 100
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=4.1e-15 Score=167.71 Aligned_cols=295 Identities=15% Similarity=0.141 Sum_probs=168.2
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhh-cCCCHHH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFE-KEGSVIS 97 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~ 97 (1051)
.++..+..||||+.++++|.+ +.. +++.|+|++|+|||||+++++++.... .+|+ ++..... .......
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYL-DLRKFEERNYISYKD 76 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEE-EGGGGTTCSCCCHHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEE-EchhhccccCCCHHH
Confidence 345566789999999999999 754 699999999999999999999886532 3444 3433200 0001122
Q ss_pred HHHHHHHHHh-------------cc-CCC-------c-------cccchhhHHHHHHhhCCCeEEEEEeCCCCHH-----
Q 048831 98 LQKQLLSNLL-------------KL-GDI-------S-------IWHVDDGINIIGSRLRQQKVLLVIDDVADVE----- 144 (1051)
Q Consensus 98 l~~~ll~~l~-------------~~-~~~-------~-------~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~----- 144 (1051)
....+...+. .. ... . .....+....+.+..+ ++++|||||++...
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCch
Confidence 2222222211 00 000 0 0112222333333222 49999999996532
Q ss_pred HHHHHhcCCCCCCCCCEEEEEeCChhhhHhh----C----CC-C-cceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHH
Q 048831 145 QLQSLAGKRDWFGLGSRILITTRDKQLLVAH----E----VD-E-EHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVEL 214 (1051)
Q Consensus 145 ~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~----~----~~-~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 214 (1051)
++..+...+....++.++|+|+|........ . .. . ...+++.+|+.+|+.+++...........+.
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---- 231 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---- 231 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----
Confidence 1211111111112467899999986532211 0 11 1 2479999999999999998754211111111
Q ss_pred HHHHHHhcCCCchHHHHHHHHhcC-CCHHHHHHH-HHHhhcCCCchHHHHHH-Hhcc--CCChhcccceeeeecccCCCC
Q 048831 215 SKRVLNYASGLPLALKVLGSFLIG-RSVDQWRSA-LERLKRDPSNKIMSILQ-ISFD--GLQDSEKKIFLDVACFFKQKN 289 (1051)
Q Consensus 215 ~~~i~~~~~G~PLal~~~g~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~-~sy~--~L~~~~k~~fl~~a~f~~~~~ 289 (1051)
..+|++.++|+|+++..++..+.. .+...|... .+... ..+...+. ..++ .|++.++.++..+|+ . . .
T Consensus 232 ~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~ 304 (357)
T 2fna_A 232 YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-K 304 (357)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-C
Confidence 178999999999999999887642 233333221 11110 11111122 2111 688889999999988 2 3 5
Q ss_pred HHHHHHHHh-hcC--CC---cchhhhHhhccCceeEeCCCceehhHHHHHHH
Q 048831 290 RDYVTKILE-GCG--FF---PVIGIEVLIERSLLTVDDYNTLGMHDLLQELG 335 (1051)
Q Consensus 290 ~~~l~~~~~-~~g--~~---~~~~l~~L~~~sLi~~~~~~~~~mHdll~~~~ 335 (1051)
...+.+.+. ..| .. ....++.|.+.++|......+...|++++++.
T Consensus 305 ~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 305 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 555554332 223 21 23558899999999876433334689988764
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=1.3e-14 Score=171.12 Aligned_cols=179 Identities=17% Similarity=0.170 Sum_probs=96.4
Q ss_pred CCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCC
Q 048831 512 KLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLT 591 (1051)
Q Consensus 512 ~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~ 591 (1051)
+|+.|+++++. +. .+|..+ +++|++|+|++|.. ..+| ..+++|++|++++|.++.+|. +..
T Consensus 60 ~L~~L~Ls~n~-L~---------~lp~~l--~~~L~~L~Ls~N~l-~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~-- 120 (571)
T 3cvr_A 60 QFSELQLNRLN-LS---------SLPDNL--PPQITVLEITQNAL-ISLP---ELPASLEYLDACDNRLSTLPE-LPA-- 120 (571)
T ss_dssp TCSEEECCSSC-CS---------CCCSCC--CTTCSEEECCSSCC-SCCC---CCCTTCCEEECCSSCCSCCCC-CCT--
T ss_pred CccEEEeCCCC-CC---------ccCHhH--cCCCCEEECcCCCC-cccc---cccCCCCEEEccCCCCCCcch-hhc--
Confidence 66667766631 22 233333 35566666666543 3555 345666666666666666665 443
Q ss_pred CCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccC
Q 048831 592 GLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSG 671 (1051)
Q Consensus 592 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 671 (1051)
+|+.|++++|... .+|. .+++|+.|++++|... .+|. .+++|++|++++|.+..+|. +. ++|+.|++++
T Consensus 121 ~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 121 SLKHLDVDNNQLT-MLPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST 189 (571)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS
T ss_pred CCCEEECCCCcCC-CCCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC
Confidence 6666666665433 2554 4566666666665433 3444 35566666666666666555 33 5666666666
Q ss_pred CCCCCCCCcccCCccccccccCCCCccccCCCCCC-----CCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCce
Q 048831 672 CNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSG-----LCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFV 746 (1051)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~-----l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 746 (1051)
|..... |. +.. .+.|+.|+|++|.+.. +|..+..+++|+.|+|++|.++
T Consensus 190 N~L~~l-----------------------p~-~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 190 NLLESL-----------------------PA-VPVRNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SCCSSC-----------------------CC-CC--------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCC
T ss_pred CCCCch-----------------------hh-HHHhhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCC
Confidence 543311 11 111 1222556666665542 5555555566666666666554
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=4.1e-16 Score=175.91 Aligned_cols=205 Identities=16% Similarity=0.168 Sum_probs=96.7
Q ss_pred eecEEeeeCCCCCCcCchhhCCC-----CCCCEEEecCccCcccCcc-----ccCC-CCCCEEecCCCCCCCccccc---
Q 048831 545 CLRTLKLSGCSKLKKFPAIVASM-----EDLSELYLDGTYITEVPSS-----IELL-TGLELLNLNDCKNLVRLPNS--- 610 (1051)
Q Consensus 545 ~L~~L~Ls~c~~~~~~p~~~~~l-----~~L~~L~L~~~~i~~lp~~-----i~~l-~~L~~L~L~~~~~l~~lp~~--- 610 (1051)
+|++|+|++|......+..+..+ ++|++|++++|.++..+.. +..+ ++|+.|++++|......+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 45555555554333333333332 5555555555555533221 3333 55666666555532222221
Q ss_pred -ccC-CCCCCEEeccCCCCCC----cCCcccCCCC-CccEEEccCCCCcCCCc-----ccccc-cCCcEEEccCCCCCCC
Q 048831 611 -ING-LKSLKTLNLSGCCKLE----NVPDTLGQVE-SLEELDISGTATRRPPS-----SIFLM-KNLKTLSFSGCNGPPS 677 (1051)
Q Consensus 611 -i~~-L~~L~~L~L~~c~~l~----~lp~~l~~l~-~L~~L~l~~~~~~~~~~-----~l~~l-~~L~~L~l~~~~~~~~ 677 (1051)
+.. .++|++|++++|.... .++..+..++ +|++|++++|.+..... .+..+ ++|+.|++++|.....
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 222 2356666666554332 2222333333 56666666665544332 22223 3666666665543221
Q ss_pred CCcccCCccccccccCCCCccccCCCCCC-CCCCCEEeccCCCCCCcc---ccccccCCCcCcEEeccCCCce-------
Q 048831 678 TASCHLNLPFNLMRKSSCPVALMLPSLSG-LCSLSKLDLSDCGLREGA---ILSDICNLHSLKELYLSGNNFV------- 746 (1051)
Q Consensus 678 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~-l~~L~~L~L~~~~l~~~~---~~~~l~~l~~L~~L~L~~n~l~------- 746 (1051)
. ...++..+.. .++|+.|+|++|.+.+.. +...+..+++|+.|+|++|.+.
T Consensus 212 ~------------------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~ 273 (362)
T 3goz_A 212 S------------------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC 273 (362)
T ss_dssp C------------------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred H------------------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence 0 0001122222 236666666666665421 1233455666777777766632
Q ss_pred -eccccccCCCCCCEEeccCCc
Q 048831 747 -TLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 747 -~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
.++..+..+++|+.|++++|+
T Consensus 274 ~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 274 KALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHhccCCceEEEecCCCc
Confidence 334445566666666666665
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=2.2e-14 Score=156.04 Aligned_cols=167 Identities=25% Similarity=0.365 Sum_probs=98.8
Q ss_pred CCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEc
Q 048831 567 MEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDI 646 (1051)
Q Consensus 567 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l 646 (1051)
+++|++|+++++.+..++. +..+++|+.|++++|... .++. +..+++|+.|++++|.. ..++ .+..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCEEEC
Confidence 3344444444444444432 444555555555554322 2222 45555555555555432 2222 2555666666666
Q ss_pred cCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCcccc
Q 048831 647 SGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAIL 726 (1051)
Q Consensus 647 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 726 (1051)
++|.+..+ ..+..+++|+.|++++|.... .+.+..+++|+.|++++|.+.+ ++
T Consensus 120 ~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~------------------------~~~l~~l~~L~~L~L~~N~l~~--~~ 172 (291)
T 1h6t_A 120 EHNGISDI-NGLVHLPQLESLYLGNNKITD------------------------ITVLSRLTKLDTLSLEDNQISD--IV 172 (291)
T ss_dssp TTSCCCCC-GGGGGCTTCCEEECCSSCCCC------------------------CGGGGGCTTCSEEECCSSCCCC--CG
T ss_pred CCCcCCCC-hhhcCCCCCCEEEccCCcCCc------------------------chhhccCCCCCEEEccCCcccc--ch
Confidence 66665554 345666666777666665322 1235567778888888887754 33
Q ss_pred ccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCc
Q 048831 727 SDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 727 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
. +..+++|+.|++++|.++.+|. +..+++|+.|++++|+
T Consensus 173 ~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 173 P-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp G-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred h-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 3 7778888888888888888774 7788888888888876
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=3.2e-14 Score=154.74 Aligned_cols=175 Identities=23% Similarity=0.352 Sum_probs=133.7
Q ss_pred ccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEE
Q 048831 541 SSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTL 620 (1051)
Q Consensus 541 ~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 620 (1051)
..+++|++|++++|. +..++ .+..+++|++|++++|.++.++. +..+++|+.|++++|.. ..+| .+..+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEE
T ss_pred hhcCcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCEE
Confidence 346777777777764 33444 36677888888888888887766 77888888888888763 3344 37788888888
Q ss_pred eccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCcccc
Q 048831 621 NLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALM 700 (1051)
Q Consensus 621 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 700 (1051)
++++|.... + ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.....
T Consensus 118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~----------------------- 171 (291)
T 1h6t_A 118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI----------------------- 171 (291)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC-----------------------
T ss_pred ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccc-----------------------
Confidence 888875443 3 4577888899999999888877 6788889999999998865432
Q ss_pred CCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccc
Q 048831 701 LPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPA 750 (1051)
Q Consensus 701 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~ 750 (1051)
++ +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.++..|.
T Consensus 172 ~~-l~~l~~L~~L~L~~N~i~~--l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 172 VP-LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp GG-GTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred hh-hcCCCccCEEECCCCcCCC--Ch-hhccCCCCCEEECcCCcccCCcc
Confidence 22 7788999999999999975 44 48899999999999999887664
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=5.9e-16 Score=174.55 Aligned_cols=256 Identities=14% Similarity=0.107 Sum_probs=133.7
Q ss_pred EEEcCccCccccccc-ccCCCCCCEEecCCCCCCCCCC-----CCCCCC-ccCEEEeeCCCCChhhhhhhccCCCCcEEe
Q 048831 445 EFQMCYSHIEELWKG-IKPLNTLKVMKLSHSENLIKTP-----NFIEVP-NLEVLDLKGCTSLREIHSSLLRHNKLILLN 517 (1051)
Q Consensus 445 ~L~l~~~~i~~l~~~-~~~l~~L~~L~L~~~~~l~~~~-----~~~~l~-~L~~L~L~~c~~l~~l~~si~~l~~L~~L~ 517 (1051)
++.++++.+...... +...++|++|++++|......+ .+..++ +|++|+|++|..-...+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~------- 74 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI------- 74 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH-------
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH-------
Confidence 355666666644333 3334447777777765332221 144455 56666666553222222222221
Q ss_pred cCCCCCCCccCCCCCCCCCccccccC-ceecEEeeeCCCCCCcCchh----hCCC-CCCCEEEecCccCcccCc-----c
Q 048831 518 LKGCTSLTTLPDCKNLSSLPVTISSL-KCLRTLKLSGCSKLKKFPAI----VASM-EDLSELYLDGTYITEVPS-----S 586 (1051)
Q Consensus 518 L~~c~~l~~l~~~~~l~~lp~~l~~l-~~L~~L~Ls~c~~~~~~p~~----~~~l-~~L~~L~L~~~~i~~lp~-----~ 586 (1051)
+... ++|++|+|++|......+.. +..+ ++|++|++++|.++..+. .
T Consensus 75 ----------------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 75 ----------------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132 (362)
T ss_dssp ----------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ----------------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence 1111 45555555555433333332 2223 566666666666654432 1
Q ss_pred ccC-CCCCCEEecCCCCCCC----cccccccCCC-CCCEEeccCCCCCCcCCc----ccCCC-CCccEEEccCCCCcC--
Q 048831 587 IEL-LTGLELLNLNDCKNLV----RLPNSINGLK-SLKTLNLSGCCKLENVPD----TLGQV-ESLEELDISGTATRR-- 653 (1051)
Q Consensus 587 i~~-l~~L~~L~L~~~~~l~----~lp~~i~~L~-~L~~L~L~~c~~l~~lp~----~l~~l-~~L~~L~l~~~~~~~-- 653 (1051)
+.. .++|++|++++|.... .++..+..++ +|++|++++|......+. .+..+ ++|++|++++|.+..
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 223 2466666666665432 2333344444 677777776654433332 23334 477777777777665
Q ss_pred ---CCccccc-ccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCC---Cc---
Q 048831 654 ---PPSSIFL-MKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLR---EG--- 723 (1051)
Q Consensus 654 ---~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~---~~--- 723 (1051)
++..+.. .++|+.|++++|....... ..+...+..+++|+.|+|++|.+. ..
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~------------------~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSL------------------ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSSCCCCCCH------------------HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCcHHH------------------HHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 4444554 3477888887776433210 011123456777888888888632 11
Q ss_pred cccccccCCCcCcEEeccCCCcee
Q 048831 724 AILSDICNLHSLKELYLSGNNFVT 747 (1051)
Q Consensus 724 ~~~~~l~~l~~L~~L~L~~n~l~~ 747 (1051)
.++..+..+++|+.|++++|.+..
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHhccCCceEEEecCCCcCCC
Confidence 233456677788888888887763
No 106
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.54 E-value=6.1e-14 Score=161.41 Aligned_cols=290 Identities=16% Similarity=0.084 Sum_probs=167.6
Q ss_pred CCCCCCccccchhHHHHHHHHh-cC--CC--CCeeEEEE--EcCCcchHHHHHHHHHHHHhcc-----ccceEEEeehhh
Q 048831 20 EPKTVKELVGIESRLEKLRFLM-GT--GS--TDVRMIGI--WGMGGLGKTTLARVVYDLISHE-----FYASSFLADVRE 87 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~~v~I--~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~ 87 (1051)
+...+..++||+.++++|.+++ .. .+ ...+.+.| +|++|+||||||+++++..... +...+.+.++..
T Consensus 17 ~~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 17 ENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp TTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred CccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 3445578999999999999888 42 11 23456767 9999999999999999877653 233333333322
Q ss_pred hhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhC--CCeEEEEEeCCCCH--------HHHHHHhcCCCCC-
Q 048831 88 RFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLR--QQKVLLVIDDVADV--------EQLQSLAGKRDWF- 156 (1051)
Q Consensus 88 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~--~k~~LlVlDdv~~~--------~~~~~l~~~~~~~- 156 (1051)
. .....+..+++..+.........+..+....+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 97 ~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~ 172 (412)
T 1w5s_A 97 A----PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP 172 (412)
T ss_dssp C----CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC
T ss_pred C----CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc
Confidence 1 2225677777777652211111223344555555554 67999999999664 3333332222111
Q ss_pred --C--CCCEEEEEeCChhhhHhh--------CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcC-
Q 048831 157 --G--LGSRILITTRDKQLLVAH--------EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYAS- 223 (1051)
Q Consensus 157 --~--~gs~IiiTTR~~~~~~~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~- 223 (1051)
+ ....||+||+...+.... .... ..+.+.+|+.+++.++|...+.....+.....+.++.|+++++
T Consensus 173 ~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~-~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~ 251 (412)
T 1w5s_A 173 SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIG-FKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGE 251 (412)
T ss_dssp CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCG
T ss_pred cCCCCceEEEEEEeccccHHHHHhhhcchhhhhcC-CeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Confidence 1 334578788765532111 1111 1499999999999999976542111111111356778899999
Q ss_pred -----CCchHHHHHHHHh------cCC---CHHHHHHHHHHhhcCCCchHHHHHHHhccCCChhcccceeeeecccC---
Q 048831 224 -----GLPLALKVLGSFL------IGR---SVDQWRSALERLKRDPSNKIMSILQISFDGLQDSEKKIFLDVACFFK--- 286 (1051)
Q Consensus 224 -----G~PLal~~~g~~L------~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~--- 286 (1051)
|+|..+..++... .+. +.+.+..++..... ...+...++.||+.++.++..+|.+..
T Consensus 252 ~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 252 DKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp GGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 9997665554321 111 23444444332210 234555678999999999988887542
Q ss_pred -CCCHHHHHH----HH-hhcCCCc------chhhhHhhccCceeEe
Q 048831 287 -QKNRDYVTK----IL-EGCGFFP------VIGIEVLIERSLLTVD 320 (1051)
Q Consensus 287 -~~~~~~l~~----~~-~~~g~~~------~~~l~~L~~~sLi~~~ 320 (1051)
.+....+.. +. ...|..+ ...++.|.+.++|...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 223333322 22 2223221 2447889999999775
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=3.2e-14 Score=167.68 Aligned_cols=187 Identities=17% Similarity=0.265 Sum_probs=97.2
Q ss_pred CCcEEEecCcccCCcccccCcCceEEEEcCCCCCCCCCCCCCCCeeEEEcCccCcccccccccCCCCCCEEecCCCCCCC
Q 048831 399 NLRFLNIGNVQLPEGLEYLSNKLRLLNWHRYPLKSLPSNLQLDKIVEFQMCYSHIEELWKGIKPLNTLKVMKLSHSENLI 478 (1051)
Q Consensus 399 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L~~~~~l~ 478 (1051)
+|+.|+++++.+..-...+..+|++|++++|.++.+| -.+.+|++|++++|.+..+|. +.. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~--- 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ--- 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC---
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc---
Confidence 5556666555543322222334555555555555555 223445555555554444444 222 44444444443
Q ss_pred CCCCCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCC
Q 048831 479 KTPNFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLK 558 (1051)
Q Consensus 479 ~~~~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~ 558 (1051)
+..+|. .+++|+.|+++++. +..+|. .+++|++|+|++|.. .
T Consensus 132 ---------------------l~~lp~---~l~~L~~L~Ls~N~----------l~~lp~---~l~~L~~L~Ls~N~L-~ 173 (571)
T 3cvr_A 132 ---------------------LTMLPE---LPALLEYINADNNQ----------LTMLPE---LPTSLEVLSVRNNQL-T 173 (571)
T ss_dssp ---------------------CSCCCC---CCTTCCEEECCSSC----------CSCCCC---CCTTCCEEECCSSCC-S
T ss_pred ---------------------CCCCCC---cCccccEEeCCCCc----------cCcCCC---cCCCcCEEECCCCCC-C
Confidence 333443 34455555555421 122222 255666666666543 3
Q ss_pred cCchhhCCCCCCCEEEecCccCcccCccccCCCCC-------CEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcC
Q 048831 559 KFPAIVASMEDLSELYLDGTYITEVPSSIELLTGL-------ELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENV 631 (1051)
Q Consensus 559 ~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L-------~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~l 631 (1051)
.+|. +. ++|+.|+|++|.|+.+|. +.. +| +.|+|++|. +..+|..+..+++|+.|+|++|...+.+
T Consensus 174 ~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 174 FLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred Ccch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 3555 43 667777777777776666 443 55 777777664 3456666666777777777777666666
Q ss_pred CcccCCC
Q 048831 632 PDTLGQV 638 (1051)
Q Consensus 632 p~~l~~l 638 (1051)
|..++.+
T Consensus 247 p~~l~~l 253 (571)
T 3cvr_A 247 RESLSQQ 253 (571)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6555443
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=9.9e-14 Score=165.52 Aligned_cols=175 Identities=23% Similarity=0.354 Sum_probs=125.1
Q ss_pred ccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEE
Q 048831 541 SSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTL 620 (1051)
Q Consensus 541 ~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 620 (1051)
..+++|+.|++++|. +..+| .+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.. ..+| .+..+++|+.|
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCEE
Confidence 457788888888765 44454 46778888888888888887776 77888888888888753 3444 57778888888
Q ss_pred eccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCcccc
Q 048831 621 NLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALM 700 (1051)
Q Consensus 621 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 700 (1051)
+|++|.... + ..+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.....
T Consensus 115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~----------------------- 168 (605)
T 1m9s_A 115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI----------------------- 168 (605)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC-----------------------
T ss_pred EecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc-----------------------
Confidence 888876443 3 3477778888888888877776 5677777888888877764332
Q ss_pred CCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccc
Q 048831 701 LPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPA 750 (1051)
Q Consensus 701 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~ 750 (1051)
++ +..+++|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+...|.
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~i~~--l-~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNHISD--L-RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp GG-GTTCTTCCEEECCSSCCCB--C-GGGTTCTTCSEEECCSEEEECCCC
T ss_pred hh-hccCCCCCEEECcCCCCCC--C-hHHccCCCCCEEEccCCcCcCCcc
Confidence 22 5667778888888877754 3 356777778888888777776553
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=8.5e-14 Score=141.93 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=98.3
Q ss_pred cccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcc-cCccccCCCCCCEEecCCCCCCCcccccccCCCCCC
Q 048831 540 ISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITE-VPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLK 618 (1051)
Q Consensus 540 l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 618 (1051)
+..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .|..+..+++|++|++++|......|..+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 455677777777776 333333 56677788888888888774 567778888888888888776666677788888888
Q ss_pred EEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCC
Q 048831 619 TLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNG 674 (1051)
Q Consensus 619 ~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 674 (1051)
+|++++|..++.+| .+..+++|+.|++++|.+..++ .+..+++|+.|++++|+.
T Consensus 140 ~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 140 SIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 88888887666666 5778888888888888887776 777888888888888763
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=6.9e-14 Score=142.63 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=74.2
Q ss_pred CCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEcc
Q 048831 568 EDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 647 (1051)
Q Consensus 568 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~ 647 (1051)
++|++|+++++.+..+| .+..+++|++|++++| ....++ .+..+++|++|++++|......+..++.+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 33444444444444444 3444444444444444 122222 34445555555555544433344445555555555555
Q ss_pred CCCCcC-CCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCcccc
Q 048831 648 GTATRR-PPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAIL 726 (1051)
Q Consensus 648 ~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 726 (1051)
+|.+.. .|..+..+++|+.|++++|..... .+.+.++++|+.|++++|.+.+ ++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-----------------------~~~l~~l~~L~~L~l~~n~i~~--~~ 175 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITD-----------------------IMPLKTLPELKSLNIQFDGVHD--YR 175 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-----------------------CGGGGGCSSCCEEECTTBCCCC--CT
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccc-----------------------cHhhcCCCCCCEEECCCCCCcC--hH
Confidence 555443 344455555555555555542221 1134556667777777776665 22
Q ss_pred ccccCCCcCcEEeccCCCce
Q 048831 727 SDICNLHSLKELYLSGNNFV 746 (1051)
Q Consensus 727 ~~l~~l~~L~~L~L~~n~l~ 746 (1051)
.+..+++|+.|++++|++.
T Consensus 176 -~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -TGGGCSSCCEEEECBC---
T ss_pred -HhccCCCCCEEEeeCcccC
Confidence 5666777777777777654
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=1.1e-13 Score=165.21 Aligned_cols=126 Identities=20% Similarity=0.274 Sum_probs=64.2
Q ss_pred cccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCE
Q 048831 540 ISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKT 619 (1051)
Q Consensus 540 l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 619 (1051)
+..+++|+.|+|++|.... ++. +..+++|+.|+|++|.+..+| .+..+++|+.|+|++|... .++ .+..+++|+.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~ 135 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLES 135 (605)
T ss_dssp GGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC-CCG-GGGGCTTCSE
T ss_pred HccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC-CCc-cccCCCccCE
Confidence 3445555555555544322 222 555555555555555555544 3555555555555555432 222 3555555555
Q ss_pred EeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCC
Q 048831 620 LNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCN 673 (1051)
Q Consensus 620 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 673 (1051)
|+|++|.... + ..+..+++|+.|+|++|.+..+++ +..+++|+.|+|++|.
T Consensus 136 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 136 LYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred EECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence 5555554322 2 345555555555555555555444 5555555555555554
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=2.7e-13 Score=139.64 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=81.8
Q ss_pred ceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCCEEec
Q 048831 544 KCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSS-IELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNL 622 (1051)
Q Consensus 544 ~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 622 (1051)
++|++|++++|......+..+..+++|++|++++|.++.+|.. +..+++|++|++++|..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------------------- 88 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL------------------- 88 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-------------------
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC-------------------
Confidence 3555555555543333333345555555555555555544433 34455555555554433
Q ss_pred cCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcc-cccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccC
Q 048831 623 SGCCKLENVPDTLGQVESLEELDISGTATRRPPSS-IFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALML 701 (1051)
Q Consensus 623 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 701 (1051)
....+..+..+++|++|++++|.+..++.. +..+++|+.|++++|...... +
T Consensus 89 -----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~----------------------~ 141 (208)
T 2o6s_A 89 -----QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP----------------------D 141 (208)
T ss_dssp -----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC----------------------T
T ss_pred -----CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC----------------------H
Confidence 222222344445555555555554444432 344555555555554332110 1
Q ss_pred CCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCce-eccccccCCCC
Q 048831 702 PSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFV-TLPASISGLFN 757 (1051)
Q Consensus 702 ~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~ 757 (1051)
..+..+++|+.|++++|.+. +.+++|+.|+++.|+++ .+|.+++.++.
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHhccCCCccEEEecCCCee--------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 22455667777777777553 24567777777777766 66766665554
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=5.4e-13 Score=137.36 Aligned_cols=173 Identities=19% Similarity=0.142 Sum_probs=126.8
Q ss_pred CEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCC
Q 048831 571 SELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTA 650 (1051)
Q Consensus 571 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 650 (1051)
+.++.+++.++.+|..+ .++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45666667777777554 3578888888876554444456788888888888876554444557889999999999999
Q ss_pred CcCCCcc-cccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccc
Q 048831 651 TRRPPSS-IFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDI 729 (1051)
Q Consensus 651 ~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l 729 (1051)
+..++.. +..+++|+.|++++|...... +..+.++++|+.|++++|.+.. ..+..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l~~L~~L~l~~N~l~~-~~~~~~ 144 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLP----------------------DGVFDKLTQLKDLRLYQNQLKS-VPDGVF 144 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCSC-CCTTTT
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccC----------------------HhHhccCCcCCEEECCCCccce-eCHHHh
Confidence 8888765 578899999999888654321 2236778889999999988863 333447
Q ss_pred cCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCccccccCC
Q 048831 730 CNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCKRLQSLPQ 774 (1051)
Q Consensus 730 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~~L~~lp~ 774 (1051)
..+++|+.|++++|.+. ..+++|+.|+++.+..-+.+|.
T Consensus 145 ~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred ccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeec
Confidence 78889999999988654 4566788888888877777775
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=5.8e-14 Score=150.11 Aligned_cols=166 Identities=19% Similarity=0.228 Sum_probs=95.4
Q ss_pred CceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEec
Q 048831 543 LKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNL 622 (1051)
Q Consensus 543 l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 622 (1051)
+.++..++++++. +..++ .+..+++|++|++++|.++.+| .+..+++|+.|++++|.. ..+|. +..+++|+.|++
T Consensus 18 l~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEEC
Confidence 4555566666543 33333 3455566666666666666555 455556666666655542 22332 444555555555
Q ss_pred cCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCC
Q 048831 623 SGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLP 702 (1051)
Q Consensus 623 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 702 (1051)
++ |.+..+|.... ++|+.|++++|.... .+
T Consensus 93 ~~------------------------N~l~~l~~~~~--~~L~~L~L~~N~l~~------------------------~~ 122 (263)
T 1xeu_A 93 NR------------------------NRLKNLNGIPS--ACLSRLFLDNNELRD------------------------TD 122 (263)
T ss_dssp CS------------------------SCCSCCTTCCC--SSCCEEECCSSCCSB------------------------SG
T ss_pred CC------------------------CccCCcCcccc--CcccEEEccCCccCC------------------------Ch
Confidence 54 44444433222 555555555554221 12
Q ss_pred CCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEeccCCc
Q 048831 703 SLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELEDCK 767 (1051)
Q Consensus 703 ~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~c~ 767 (1051)
.+.++++|+.|++++|++.+ ++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|+
T Consensus 123 ~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 123 SLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred hhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 35566777777777777754 33 566777778888877777777 466777778888877776
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=8.1e-13 Score=138.08 Aligned_cols=148 Identities=22% Similarity=0.209 Sum_probs=91.8
Q ss_pred CEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCC
Q 048831 571 SELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTA 650 (1051)
Q Consensus 571 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 650 (1051)
+.++.+++.+..+|..+. ++|++|+|++|......|..+..+++|+.|+|++|......+..+..+++|+.|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 445555666666665443 556666666655444445555555555555555554322222334555555555555555
Q ss_pred CcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCcccccccc
Q 048831 651 TRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDIC 730 (1051)
Q Consensus 651 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~ 730 (1051)
+..++. ..+..+++|+.|+|++|.+. .+|..+.
T Consensus 100 l~~l~~---------------------------------------------~~~~~l~~L~~L~Ls~N~l~--~lp~~~~ 132 (229)
T 3e6j_A 100 LTVLPS---------------------------------------------AVFDRLVHLKELFMCCNKLT--ELPRGIE 132 (229)
T ss_dssp CCCCCT---------------------------------------------TTTTTCTTCCEEECCSSCCC--SCCTTGG
T ss_pred CCccCh---------------------------------------------hHhCcchhhCeEeccCCccc--ccCcccc
Confidence 444432 22456677777777777775 3677777
Q ss_pred CCCcCcEEeccCCCceeccc-cccCCCCCCEEeccCCc
Q 048831 731 NLHSLKELYLSGNNFVTLPA-SISGLFNLKYLELEDCK 767 (1051)
Q Consensus 731 ~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~c~ 767 (1051)
.+++|+.|+|++|.++.+|. .+..+++|+.|++++|+
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 88888888888888887774 46778888888888876
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=7.1e-13 Score=137.51 Aligned_cols=149 Identities=24% Similarity=0.321 Sum_probs=82.5
Q ss_pred CEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCC
Q 048831 571 SELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTA 650 (1051)
Q Consensus 571 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 650 (1051)
+.++++++.++.+|..+. ++|+.|++++|......+..+..+++|+.|+|++|......|..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 345555566666665443 456666666655433333455666666666666665555456666666667777766666
Q ss_pred CcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCcccccccc
Q 048831 651 TRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDIC 730 (1051)
Q Consensus 651 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~ 730 (1051)
+..+|..+ +.++++|+.|+|++|.+.. ..+..+.
T Consensus 92 l~~l~~~~---------------------------------------------f~~l~~L~~L~L~~N~l~~-~~~~~~~ 125 (220)
T 2v9t_B 92 ITELPKSL---------------------------------------------FEGLFSLQLLLLNANKINC-LRVDAFQ 125 (220)
T ss_dssp CCCCCTTT---------------------------------------------TTTCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred CCccCHhH---------------------------------------------ccCCCCCCEEECCCCCCCE-eCHHHcC
Confidence 66554332 3334444555555554432 2234455
Q ss_pred CCCcCcEEeccCCCceeccc-cccCCCCCCEEeccCCc
Q 048831 731 NLHSLKELYLSGNNFVTLPA-SISGLFNLKYLELEDCK 767 (1051)
Q Consensus 731 ~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~c~ 767 (1051)
.+++|+.|+|++|.++.+|. .+..+++|+.|++++|+
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 55556666666665555544 24555666666666554
No 117
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=5.7e-12 Score=143.34 Aligned_cols=278 Identities=14% Similarity=0.091 Sum_probs=170.1
Q ss_pred CCccccchhHHHHHHHHhcC--CCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc------c-cceEEEeehhhhhhcCCC
Q 048831 24 VKELVGIESRLEKLRFLMGT--GSTDVRMIGIWGMGGLGKTTLARVVYDLISHE------F-YASSFLADVRERFEKEGS 94 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~------f-~~~~~~~~~~~~~~~~~~ 94 (1051)
+..++||+.+++++..++.. .....+.+.|+|++|+||||+|+++++.+... + ...+++.++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~ 95 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG---GT 95 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHC---SC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCC---CC
Confidence 47899999999999887754 23445789999999999999999999877443 2 3333444443321 12
Q ss_pred HHHHHHHHHHHHhccCCC-ccccchhhHHHHHHhhCCCeEEEEEeCCCCHHH-------HHHHhcCCCCCCCCCEEEEEe
Q 048831 95 VISLQKQLLSNLLKLGDI-SIWHVDDGINIIGSRLRQQKVLLVIDDVADVEQ-------LQSLAGKRDWFGLGSRILITT 166 (1051)
Q Consensus 95 ~~~l~~~ll~~l~~~~~~-~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~IiiTT 166 (1051)
...+..+++..+...... ...........+.+.++.++.+|||||++.... +..+.... .+.+||+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEE
Confidence 255666777766422111 112234456667777777666999999976532 33333322 678899999
Q ss_pred CChhh----hHh--hCCCCcceEEcCCCChhHHHHHHHHhhh---cCCCCchHHHHHHHHHHHhcC---CCch-HHHHHH
Q 048831 167 RDKQL----LVA--HEVDEEHILNLDVLNDDEALQLFSMKAF---KSHQPVEEYVELSKRVLNYAS---GLPL-ALKVLG 233 (1051)
Q Consensus 167 R~~~~----~~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---G~PL-al~~~g 233 (1051)
+.... ... ..... .+.+.+++.++..+++...+. ......+ +..+.++++++ |.|. |+..+-
T Consensus 172 ~~~~~~~~l~~~l~sr~~~--~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGP--SVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCC--EEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCC--eEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHH
Confidence 87532 111 11223 899999999999999998753 2222222 44566777777 9886 444333
Q ss_pred HHh--c-C---CCHHHHHHHHHHhhcCCCchHHHHHHHhccCCChhcccceeeeecccC-CCCHHHHHHHHhhcCCCc--
Q 048831 234 SFL--I-G---RSVDQWRSALERLKRDPSNKIMSILQISFDGLQDSEKKIFLDVACFFK-QKNRDYVTKILEGCGFFP-- 304 (1051)
Q Consensus 234 ~~L--~-~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~~~~~~l~~~~~~~g~~~-- 304 (1051)
... . + -+.+.+..+++.... ..+..+++.|++.++..+..++.... +...+....+....|..+
T Consensus 247 ~a~~~a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (384)
T 2qby_B 247 RAAQLASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLS 319 (384)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHhcCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCC
Confidence 322 1 1 266777777765532 34666778899888888776665111 111112223333333221
Q ss_pred ----chhhhHhhccCceeEe
Q 048831 305 ----VIGIEVLIERSLLTVD 320 (1051)
Q Consensus 305 ----~~~l~~L~~~sLi~~~ 320 (1051)
...++.|.++++|...
T Consensus 320 ~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 320 YRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 2336778888998764
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=2.3e-13 Score=145.42 Aligned_cols=173 Identities=20% Similarity=0.239 Sum_probs=120.2
Q ss_pred CCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccC
Q 048831 510 HNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIEL 589 (1051)
Q Consensus 510 l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 589 (1051)
+.+++.+++++ ..+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++|.+..+|. +..
T Consensus 18 l~~l~~l~l~~----------~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~ 83 (263)
T 1xeu_A 18 LANAVKQNLGK----------QSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDLSP-LKD 83 (263)
T ss_dssp HHHHHHHHHTC----------SCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTT
T ss_pred HHHHHHHHhcC----------CCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCChh-hcc
Confidence 34455556655 3344444 46779999999999985 55666 68899999999999999999988 999
Q ss_pred CCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEc
Q 048831 590 LTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSF 669 (1051)
Q Consensus 590 l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l 669 (1051)
+++|+.|++++|.. ..+|... . ++|+.|++++|... .++ .+..+++|+.|++++|.+..++
T Consensus 84 l~~L~~L~L~~N~l-~~l~~~~-~-~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~~~~-------------- 144 (263)
T 1xeu_A 84 LTKLEELSVNRNRL-KNLNGIP-S-ACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKSIV-------------- 144 (263)
T ss_dssp CSSCCEEECCSSCC-SCCTTCC-C-SSCCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCCCBCG--------------
T ss_pred CCCCCEEECCCCcc-CCcCccc-c-CcccEEEccCCccC-CCh-hhcCcccccEEECCCCcCCCCh--------------
Confidence 99999999999864 3444322 2 66777777766433 232 3555566666666655544432
Q ss_pred cCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceecc
Q 048831 670 SGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLP 749 (1051)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 749 (1051)
.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+...|
T Consensus 145 ---------------------------------~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 145 ---------------------------------MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ---------------------------------GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECCC
T ss_pred ---------------------------------HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCCc
Confidence 244566677777777776542 55677888888888888887666
Q ss_pred cc
Q 048831 750 AS 751 (1051)
Q Consensus 750 ~~ 751 (1051)
..
T Consensus 189 ~~ 190 (263)
T 1xeu_A 189 VK 190 (263)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=3.3e-15 Score=177.25 Aligned_cols=218 Identities=17% Similarity=0.134 Sum_probs=119.9
Q ss_pred CCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCch
Q 048831 483 FIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFPA 562 (1051)
Q Consensus 483 ~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~ 562 (1051)
+...++|+.|+|+++ .+..+|.+++.+++|+.|+++++..+..++. . +..+...+..|.
T Consensus 345 ~~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~---------------l-----l~~~~~~~~~~~ 403 (567)
T 1dce_A 345 SATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIIL---------------L-----MRALDPLLYEKE 403 (567)
T ss_dssp CSTTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH---------------H-----HHHHCTGGGHHH
T ss_pred cccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHH---------------H-----HHhcccccCCHH
Confidence 456778888888874 5678888888888888888755321111110 0 000112223333
Q ss_pred hhCCCCCCCEEE-ecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCc
Q 048831 563 IVASMEDLSELY-LDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESL 641 (1051)
Q Consensus 563 ~~~~l~~L~~L~-L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L 641 (1051)
.++.+++|+.|+ ++.+.+..++. +.+.+|. +..+|. ..|+.|++++|. ++.+|. ++.+++|
T Consensus 404 ~l~~l~~L~~L~~l~~n~~~~L~~----------l~l~~n~-i~~l~~-----~~L~~L~Ls~n~-l~~lp~-~~~l~~L 465 (567)
T 1dce_A 404 TLQYFSTLKAVDPMRAAYLDDLRS----------KFLLENS-VLKMEY-----ADVRVLHLAHKD-LTVLCH-LEQLLLV 465 (567)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHH----------HHHHHHH-HHHHHH-----TTCSEEECTTSC-CSSCCC-GGGGTTC
T ss_pred HHHHHHhcccCcchhhcccchhhh----------hhhhccc-ccccCc-----cCceEEEecCCC-CCCCcC-ccccccC
Confidence 333344444433 22222221111 1111110 001110 124445555442 223444 5555666
Q ss_pred cEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCC
Q 048831 642 EELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLR 721 (1051)
Q Consensus 642 ~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~ 721 (1051)
+.|++++|.+..+|..+..+++|+.|++++|..... | .++++++|+.|+|++|.+.
T Consensus 466 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-----------------------p-~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 466 THLDLSHNRLRALPPALAALRCLEVLQASDNALENV-----------------------D-GVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp CEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-----------------------G-GGTTCSSCCEEECCSSCCC
T ss_pred cEeecCcccccccchhhhcCCCCCEEECCCCCCCCC-----------------------c-ccCCCCCCcEEECCCCCCC
Confidence 666666666666666666666666666666543321 2 4667788888888888886
Q ss_pred CccccccccCCCcCcEEeccCCCceeccccc----cCCCCCCEEec
Q 048831 722 EGAILSDICNLHSLKELYLSGNNFVTLPASI----SGLFNLKYLEL 763 (1051)
Q Consensus 722 ~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~----~~l~~L~~L~l 763 (1051)
....|..++.+++|+.|+|++|.++.+|..+ ..+++|+.|++
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 4222788888999999999999988877644 33778887753
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=1.9e-12 Score=134.31 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=38.3
Q ss_pred EEEecCccCcccCccccCCCCCCEEecCCCCCCCccc-ccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCC
Q 048831 572 ELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLP-NSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTA 650 (1051)
Q Consensus 572 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 650 (1051)
.++++++.++.+|..+. +.++.|++++|......| ..+..+++|+.|++++|......+..+..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 44444444444444332 233455555544322222 224455555555555544333333345555555666665555
Q ss_pred CcCCC
Q 048831 651 TRRPP 655 (1051)
Q Consensus 651 ~~~~~ 655 (1051)
+..++
T Consensus 93 l~~~~ 97 (220)
T 2v70_A 93 LENVQ 97 (220)
T ss_dssp CCCCC
T ss_pred cCccC
Confidence 55443
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=8.8e-13 Score=148.30 Aligned_cols=171 Identities=20% Similarity=0.153 Sum_probs=86.6
Q ss_pred cEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCcc-cc-CCCCCCEEecCCCCCCCcccccccCCCCCCEEeccC
Q 048831 547 RTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSS-IE-LLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSG 624 (1051)
Q Consensus 547 ~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 624 (1051)
++++++++ .+..+|..+. ..++.|+|++|.++.++.. +. .+++|+.|+|++|......|..+.++++|+.|+|++
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666653 3444554332 3466666666666665543 33 566666666666554333334455555555555555
Q ss_pred CCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCC
Q 048831 625 CCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSL 704 (1051)
Q Consensus 625 c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 704 (1051)
|......+..+..+++|+.|++++|.+..++ +..+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~---------------------------------------------~~~~ 132 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVD---------------------------------------------RNAF 132 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEEC---------------------------------------------TTTT
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEEC---------------------------------------------HHHh
Confidence 5433333334455555555555555444331 2234
Q ss_pred CCCCCCCEEeccCCCCCCccccccc----cCCCcCcEEeccCCCceeccc-cccCCCC--CCEEeccCCc
Q 048831 705 SGLCSLSKLDLSDCGLREGAILSDI----CNLHSLKELYLSGNNFVTLPA-SISGLFN--LKYLELEDCK 767 (1051)
Q Consensus 705 ~~l~~L~~L~L~~~~l~~~~~~~~l----~~l~~L~~L~L~~n~l~~lp~-~~~~l~~--L~~L~l~~c~ 767 (1051)
.++++|+.|+|++|.+.. +|..+ ..+++|+.|+|++|.++.+|. .+..++. |+.|+|++|+
T Consensus 133 ~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 133 EDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TTCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 455555555555555543 33322 345666666666666665553 3344444 2555555554
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=4.1e-15 Score=176.43 Aligned_cols=181 Identities=19% Similarity=0.186 Sum_probs=138.8
Q ss_pred CCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCC-------------CCCcccccccCCCCCCEEe-ccCCCCCCc
Q 048831 565 ASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCK-------------NLVRLPNSINGLKSLKTLN-LSGCCKLEN 630 (1051)
Q Consensus 565 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~-------------~l~~lp~~i~~L~~L~~L~-L~~c~~l~~ 630 (1051)
...++|+.|+|++|.++.+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.+ .+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence 44566777777777777777777777777777776553 3445566777788888887 3332 1111
Q ss_pred CCc------ccCC--CCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCC
Q 048831 631 VPD------TLGQ--VESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLP 702 (1051)
Q Consensus 631 lp~------~l~~--l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 702 (1051)
++. .+.. ...|+.|++++|.+..+|. +..+++|+.|++++|.... +|.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~-----------------------lp~ 480 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA-----------------------LPP 480 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCC-----------------------CCG
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccc-----------------------cch
Confidence 111 0111 1358999999999999987 9999999999999987542 256
Q ss_pred CCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceec--cccccCCCCCCEEeccCCccccccCC
Q 048831 703 SLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTL--PASISGLFNLKYLELEDCKRLQSLPQ 774 (1051)
Q Consensus 703 ~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l--p~~~~~l~~L~~L~l~~c~~L~~lp~ 774 (1051)
.++++++|+.|+|++|.+.. +| .++.+++|+.|+|++|.++.+ |..+..+++|+.|++++|+ +..+|.
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~ 550 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEG 550 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSS
T ss_pred hhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCcc
Confidence 78899999999999999975 67 899999999999999999988 8999999999999999997 555543
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.40 E-value=6.8e-12 Score=142.92 Aligned_cols=316 Identities=13% Similarity=0.073 Sum_probs=179.6
Q ss_pred CCCCCCccccchhHHHHHHHHhcCC--CCCeeEEEEEcCCcchHHHHHHHHHHHHhccc-----cceEEEeehhhhhhcC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTG--STDVRMIGIWGMGGLGKTTLARVVYDLISHEF-----YASSFLADVRERFEKE 92 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~~~~~ 92 (1051)
+...+..++||+.+++++..++... ....+.+.|+|++|+||||+|+++++.....+ ...+.+.++...
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 89 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR---- 89 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS----
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC----
Confidence 3344578999999999999988542 34457899999999999999999998775432 233333333221
Q ss_pred CCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhh--CCCeEEEEEeCCCCHHH-------HHHHhcCCCCC--CCCCE
Q 048831 93 GSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL--RQQKVLLVIDDVADVEQ-------LQSLAGKRDWF--GLGSR 161 (1051)
Q Consensus 93 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l--~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~--~~gs~ 161 (1051)
.....+...++..+............+....+.+.+ .+++.+|||||++.... +..+....... ..+..
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~ 169 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVS 169 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CE
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEE
Confidence 122456666777664221111222334455555565 34689999999976542 22222221111 34567
Q ss_pred EEEEeCChhhh----Hh-hCCCCcceEEcCCCChhHHHHHHHHhhhc---CCCCchHHHHHHHHHHHhcC---CCch-HH
Q 048831 162 ILITTRDKQLL----VA-HEVDEEHILNLDVLNDDEALQLFSMKAFK---SHQPVEEYVELSKRVLNYAS---GLPL-AL 229 (1051)
Q Consensus 162 IiiTTR~~~~~----~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~i~~~~~---G~PL-al 229 (1051)
+|+||+..... .. ........+.+.+++.++..+++...+.. .....+ +..+.++++++ |.|- ++
T Consensus 170 ~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~ 246 (387)
T 2v1u_A 170 LVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRAL 246 (387)
T ss_dssp EEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHH
T ss_pred EEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHH
Confidence 88888765321 11 11111137899999999999999987532 222122 44667777777 9993 33
Q ss_pred HHHHHHhc-----C--C-CHHHHHHHHHHhhcCCCchHHHHHHHhccCCChhcccceeeeecccCCC---CHHHHH----
Q 048831 230 KVLGSFLI-----G--R-SVDQWRSALERLKRDPSNKIMSILQISFDGLQDSEKKIFLDVACFFKQK---NRDYVT---- 294 (1051)
Q Consensus 230 ~~~g~~L~-----~--~-~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~---~~~~l~---- 294 (1051)
.++..... + . +.+.+..++.... ...+.-++..|+..++..++.++....+. ....+.
T Consensus 247 ~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 247 DLLRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 33322221 2 1 5666776666542 23455667889998888877777443332 222222
Q ss_pred HHHhhcCCCc------chhhhHhhccCceeEeCC--CceehhHHHHHHHHHHHhhcCCCCCCCcccccchhHHHHHHhcC
Q 048831 295 KILEGCGFFP------VIGIEVLIERSLLTVDDY--NTLGMHDLLQELGQLIVTRQSPEEPGKRSRLWRQEEVRHVLTKN 366 (1051)
Q Consensus 295 ~~~~~~g~~~------~~~l~~L~~~sLi~~~~~--~~~~mHdll~~~~~~i~~~e~~~~~~~~~~l~~~~~i~~~l~~~ 366 (1051)
.+....|..+ ...++.|...+++..... ++. ......+..|++++|..++.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~-------------------g~~~~~~l~~~~~~i~~~l~~~ 380 (387)
T 2v1u_A 320 ELTSTLGLEHVTLRRVSGIISELDMLGIVKSRVVSRGRY-------------------GKTREVSLDADRLAVENALSED 380 (387)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEEECGGG-------------------CEEEEEEECSCHHHHHHHHHHS
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEEeecCCCC-------------------CceeEEEecCCHHHHHHHHhcc
Confidence 2222222211 233566777777766421 100 0001223567788888888765
Q ss_pred CC
Q 048831 367 AG 368 (1051)
Q Consensus 367 ~~ 368 (1051)
..
T Consensus 381 ~~ 382 (387)
T 2v1u_A 381 PF 382 (387)
T ss_dssp TT
T ss_pred Hh
Confidence 54
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=2e-12 Score=145.31 Aligned_cols=160 Identities=21% Similarity=0.201 Sum_probs=118.2
Q ss_pred ceecEEeeeCCCCCCcCchhhC-CCCCCCEEEecCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCCEEe
Q 048831 544 KCLRTLKLSGCSKLKKFPAIVA-SMEDLSELYLDGTYITEVPS-SIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLN 621 (1051)
Q Consensus 544 ~~L~~L~Ls~c~~~~~~p~~~~-~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 621 (1051)
+.++.|+|++|......+..+. .+.+|++|+|++|.+..++. .+..+++|++|+|++|......+..+..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4588899999876555555666 89999999999999998875 589999999999999876555555788999999999
Q ss_pred ccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccC
Q 048831 622 LSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALML 701 (1051)
Q Consensus 622 L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 701 (1051)
|++|......|..+..+++|+.|++++|.+..+|..+.
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~------------------------------------------ 156 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI------------------------------------------ 156 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT------------------------------------------
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh------------------------------------------
Confidence 99998777778889999999999999999888775431
Q ss_pred CCCCCCCCCCEEeccCCCCCCccccccccCCCc--CcEEeccCCCce
Q 048831 702 PSLSGLCSLSKLDLSDCGLREGAILSDICNLHS--LKELYLSGNNFV 746 (1051)
Q Consensus 702 ~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~--L~~L~L~~n~l~ 746 (1051)
..+..+++|+.|+|++|++.. ..+..+..+++ |+.|+|++|.+.
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp C----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcceEEecCCCcc
Confidence 011335566666666666642 12234555555 367777777665
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=5.5e-12 Score=130.77 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=96.1
Q ss_pred ceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEec
Q 048831 544 KCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEV-PSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNL 622 (1051)
Q Consensus 544 ~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 622 (1051)
++|++|++++|......+..+..+++|++|+|++|.+..+ |..+..+++|++|+|++|......+..+.++++|+.|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 5677777777765544455677778888888888888766 566778888888888877644333344677888888888
Q ss_pred cCCCCCCcCCcccCCCCCccEEEccCCCCcCCCc-ccccccCCcEEEccCCCC
Q 048831 623 SGCCKLENVPDTLGQVESLEELDISGTATRRPPS-SIFLMKNLKTLSFSGCNG 674 (1051)
Q Consensus 623 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 674 (1051)
++|......|..+..+++|+.|++++|.+..++. .+..+++|+.|++++|+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8877666667778888888888888888877765 466788888888887753
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=5.3e-12 Score=130.91 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=101.0
Q ss_pred ceecEEeeeCCCCCCcCc-hhhCCCCCCCEEEecCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCCEEe
Q 048831 544 KCLRTLKLSGCSKLKKFP-AIVASMEDLSELYLDGTYITEVPS-SIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLN 621 (1051)
Q Consensus 544 ~~L~~L~Ls~c~~~~~~p-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 621 (1051)
..+++|+|++|......| ..+..+++|++|++++|.++.++. .+..+++|++|+|++|......|..+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 346778888776544433 346778888888888888887765 678888888888888876666666688888888888
Q ss_pred ccCCCCCCcCCcccCCCCCccEEEccCCCCcCC-CcccccccCCcEEEccCCCC
Q 048831 622 LSGCCKLENVPDTLGQVESLEELDISGTATRRP-PSSIFLMKNLKTLSFSGCNG 674 (1051)
Q Consensus 622 L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~ 674 (1051)
|++|......|..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|+.
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 888877766677888888888888888888777 66777888888888888764
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=9.1e-12 Score=130.05 Aligned_cols=151 Identities=19% Similarity=0.156 Sum_probs=93.6
Q ss_pred ecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccC
Q 048831 546 LRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEV-PSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSG 624 (1051)
Q Consensus 546 L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 624 (1051)
.+.++.+++ .+..+|..+. ++|++|++++|.+..+ |..+..+++|+.|+|++|......+..+..+++|+.|+|++
T Consensus 21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 344555442 3444554332 5666666666666655 44466666666666666654322233456677777777777
Q ss_pred CCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCC
Q 048831 625 CCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSL 704 (1051)
Q Consensus 625 c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 704 (1051)
|......+..+..+++|+.|++++|.+..+|..+..+++|+.|++++|...... +..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~ 155 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP----------------------HGAF 155 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC----------------------TTTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC----------------------HHHH
Confidence 654443344567777777777777777777777777788888888777543221 2235
Q ss_pred CCCCCCCEEeccCCCCC
Q 048831 705 SGLCSLSKLDLSDCGLR 721 (1051)
Q Consensus 705 ~~l~~L~~L~L~~~~l~ 721 (1051)
..+++|+.|+|++|.+.
T Consensus 156 ~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECTTSCBC
T ss_pred hCCCCCCEEEeeCCCcc
Confidence 66777778888777664
No 128
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=6e-12 Score=143.27 Aligned_cols=290 Identities=16% Similarity=0.087 Sum_probs=163.9
Q ss_pred CCCCCCccccchhHHHHHHHHhcCC--CCCeeEEEEEcCCcchHHHHHHHHHHHHhccc--cceEEEeehhhhhhcCCCH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTG--STDVRMIGIWGMGGLGKTTLARVVYDLISHEF--YASSFLADVRERFEKEGSV 95 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~ 95 (1051)
+...+..++||+.+++++.+++... ....+.+.|+|++|+||||||+++++.....+ ...+++.++.... ..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~----~~ 90 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID----TP 90 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC----SH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC----CH
Confidence 3345578999999999999988742 34457899999999999999999999876654 2333333333321 11
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHhhC--CCeEEEEEeCCCCHH------HHHHHhcCCCC-CCCCCEEEEEe
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLR--QQKVLLVIDDVADVE------QLQSLAGKRDW-FGLGSRILITT 166 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~~~~-~~~gs~IiiTT 166 (1051)
..+...++..+............+....+.+.+. +++.+||||+++... .+..+...... ...+..+|+||
T Consensus 91 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 3444555444421111111122333444555543 458999999996543 23333222111 13355678888
Q ss_pred CChhhhHhhC-----CCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcC---CCchHHHHHHH-Hhc
Q 048831 167 RDKQLLVAHE-----VDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYAS---GLPLALKVLGS-FLI 237 (1051)
Q Consensus 167 R~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~~g~-~L~ 237 (1051)
++........ ......+.+.+++.++..+++...+...........++.+.++++++ |.|..+..+.. ...
T Consensus 171 ~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 171 NDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp SCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8664322111 11113799999999999999988653111111112345667777777 99984433322 211
Q ss_pred -----C---CCHHHHHHHHHHhhcCCCchHHHHHHHhccCCChhcccceeeeecccC-C---CCHHHH----HHHHhhcC
Q 048831 238 -----G---RSVDQWRSALERLKRDPSNKIMSILQISFDGLQDSEKKIFLDVACFFK-Q---KNRDYV----TKILEGCG 301 (1051)
Q Consensus 238 -----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~---~~~~~l----~~~~~~~g 301 (1051)
+ -+.+.++.++.... ...+.-.+.+++..++..+..++...+ + +....+ ..+....|
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 1 14566666655442 235666678899888888877775432 2 112222 22222223
Q ss_pred CCc------chhhhHhhccCceeEe
Q 048831 302 FFP------VIGIEVLIERSLLTVD 320 (1051)
Q Consensus 302 ~~~------~~~l~~L~~~sLi~~~ 320 (1051)
..+ ...++.|.+.++|...
T Consensus 324 ~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 VEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 222 2346778888888664
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=4.7e-12 Score=125.31 Aligned_cols=131 Identities=23% Similarity=0.230 Sum_probs=77.1
Q ss_pred CCCCCCEEecCCCCCC-CcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcC-CCcccccccCCcE
Q 048831 589 LLTGLELLNLNDCKNL-VRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRR-PPSSIFLMKNLKT 666 (1051)
Q Consensus 589 ~l~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~ 666 (1051)
..++|+.|++++|... ..+|..+..+++|+.|++++|.. ..+ ..+..+++|++|++++|.+.. +|..+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------- 92 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISV-SNLPKLPKLKKLELSENRIFGGLDMLAE------- 92 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-CCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH-------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-CCh-hhhccCCCCCEEECcCCcCchHHHHHHh-------
Confidence 3456677777666543 35565556666666666666553 223 455556666666666665554 333333
Q ss_pred EEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCce
Q 048831 667 LSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFV 746 (1051)
Q Consensus 667 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 746 (1051)
++++|+.|++++|.+.....+..+..+++|+.|++++|.++
T Consensus 93 ---------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 93 ---------------------------------------KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp ---------------------------------------HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred ---------------------------------------hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 34555555555555543222255666677777777777777
Q ss_pred eccc----cccCCCCCCEEeccCCc
Q 048831 747 TLPA----SISGLFNLKYLELEDCK 767 (1051)
Q Consensus 747 ~lp~----~~~~l~~L~~L~l~~c~ 767 (1051)
.+|. .+..+++|+.|++++|+
T Consensus 134 ~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 134 NLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TSTTHHHHHHTTCSSCCEETTEETT
T ss_pred chHHHHHHHHHhCccCcEecCCCCC
Confidence 6665 56677777777777765
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=4.1e-12 Score=125.73 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=59.2
Q ss_pred CCCCEEEecCccCc--ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEE
Q 048831 568 EDLSELYLDGTYIT--EVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELD 645 (1051)
Q Consensus 568 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 645 (1051)
++|++|++++|.+. .+|..+..+++|+.|++++|.. ..+ ..+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-CCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-CCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666666 6666666777777777777663 333 5567777777777777766555666666778888888
Q ss_pred ccCCCCcCCC
Q 048831 646 ISGTATRRPP 655 (1051)
Q Consensus 646 l~~~~~~~~~ 655 (1051)
+++|.+..++
T Consensus 102 Ls~N~l~~~~ 111 (168)
T 2ell_A 102 LSGNKLKDIS 111 (168)
T ss_dssp CBSSSCCSSG
T ss_pred ccCCccCcch
Confidence 8887776654
No 131
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=2.4e-11 Score=138.39 Aligned_cols=288 Identities=15% Similarity=0.120 Sum_probs=163.9
Q ss_pred CCCCccccchhHHHHHHHHhcC----CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHH
Q 048831 22 KTVKELVGIESRLEKLRFLMGT----GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 22 ~~~~~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
..+..++||+.+++++..++.. ..+..+.+.|+|++|+||||+|++++..........+...++... .....
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~----~~~~~ 89 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY----RNFTA 89 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC----CSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC----CCHHH
Confidence 3447899999999999888864 222334899999999999999999999876543222333332221 11245
Q ss_pred HHHHHHHHHhccCCCccccchhhHHHHHHhhC--CCeEEEEEeCCCCH--HHHHHHhcCCCCCC----CCCEEEEEeCCh
Q 048831 98 LQKQLLSNLLKLGDISIWHVDDGINIIGSRLR--QQKVLLVIDDVADV--EQLQSLAGKRDWFG----LGSRILITTRDK 169 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~--~k~~LlVlDdv~~~--~~~~~l~~~~~~~~----~gs~IiiTTR~~ 169 (1051)
+...++..+.................+.+.+. +++.+||||+++.. ..+..+...+.... .+..||+||++.
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 56666666542211111223334444444443 56899999999653 44555544433211 366788888876
Q ss_pred hhhHhhC-----CCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhc---------CCCchHHHHHHHH
Q 048831 170 QLLVAHE-----VDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYA---------SGLPLALKVLGSF 235 (1051)
Q Consensus 170 ~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~G~PLal~~~g~~ 235 (1051)
....... ......+.+.+++.++..+++...+........-..+..+.+++++ .|.|..+..+...
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 4322111 0011269999999999999998875321111111235677888888 7987554444332
Q ss_pred hc------CC---CHHHHHHHHHHhhcCCCchHHHHHHHhccCCChhcccceeeeeccc---CC--CCHHHHHHHH----
Q 048831 236 LI------GR---SVDQWRSALERLKRDPSNKIMSILQISFDGLQDSEKKIFLDVACFF---KQ--KNRDYVTKIL---- 297 (1051)
Q Consensus 236 L~------~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~---~~--~~~~~l~~~~---- 297 (1051)
.. +. +.+....+....... .+. -.+..|+.+++.++..++.+. .+ .....+.+.+
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~~~---~~~----~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVLFG---ISE----EVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHSCC---CCH----HHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHhhh---hHH----HHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 21 334444444433221 122 224567777777777676554 22 2333333322
Q ss_pred hhcCCCc------chhhhHhhccCceeEe
Q 048831 298 EGCGFFP------VIGIEVLIERSLLTVD 320 (1051)
Q Consensus 298 ~~~g~~~------~~~l~~L~~~sLi~~~ 320 (1051)
...|..+ ...++.|.++++|...
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 323 EEYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 2223221 2347889999999875
No 132
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.29 E-value=7.3e-12 Score=132.66 Aligned_cols=203 Identities=17% Similarity=0.128 Sum_probs=121.2
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQ 99 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 99 (1051)
.|.....++||+..++.+..++..+. ..+.+.|+|++|+||||+|+++++.+...+.....-. ..... .
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~---------~~~~~-~ 86 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC---------GVCDN-C 86 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC---------SCSHH-H
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC---------cccHH-H
Confidence 45556789999999999999987542 2358999999999999999999987754432110000 00000 0
Q ss_pred HHHHHHH----hccCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCC--HHHHHHHhcCCCCCCCCCEEEEEeCC
Q 048831 100 KQLLSNL----LKLGDISIWHVDDGINIIGSR-----LRQQKVLLVIDDVAD--VEQLQSLAGKRDWFGLGSRILITTRD 168 (1051)
Q Consensus 100 ~~ll~~l----~~~~~~~~~~~~~~~~~i~~~-----l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~ 168 (1051)
..+.... ....... .........+.+. ..+++.+||+||++. ...++.+...+.....+.++|+||+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp HHHHTTCCSSEEEEETTC-GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred HHHhccCCcceEEecCcc-cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 0000000 0000000 0000111112222 134679999999964 44555555444334567788888876
Q ss_pred hhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHHHh
Q 048831 169 KQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGSFL 236 (1051)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~~L 236 (1051)
.......-......+++.+++.++..+++...+.......+ .+..+.|+++++|+|..+..+...+
T Consensus 166 ~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 166 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 53221111111248999999999999999987754332222 2567889999999999988776543
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=5.5e-12 Score=122.00 Aligned_cols=127 Identities=20% Similarity=0.179 Sum_probs=73.9
Q ss_pred CCCEEeccCCCCC-CcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCC
Q 048831 616 SLKTLNLSGCCKL-ENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSS 694 (1051)
Q Consensus 616 ~L~~L~L~~c~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 694 (1051)
+|+.|++++|... +.+|..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|......
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~---------------- 80 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGL---------------- 80 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCT----------------
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchH----------------
Confidence 3444444444332 23444444444444444444444444 34444555555555554432210
Q ss_pred CCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccc----cccCCCCCCEEeccC
Q 048831 695 CPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPA----SISGLFNLKYLELED 765 (1051)
Q Consensus 695 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~----~~~~l~~L~~L~l~~ 765 (1051)
+..+..+++|+.|++++|.+.+...+..++.+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 81 ------~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 81 ------EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ------HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ------HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 22234466777777777777643344677888888888888888888775 567888888888764
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=6.9e-12 Score=121.30 Aligned_cols=127 Identities=21% Similarity=0.195 Sum_probs=105.8
Q ss_pred CceecEEeeeCCCCC-CcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEe
Q 048831 543 LKCLRTLKLSGCSKL-KKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLN 621 (1051)
Q Consensus 543 l~~L~~L~Ls~c~~~-~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 621 (1051)
.++|++|++++|... +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 577888899888765 57888888889999999999998888 6788899999999999887666887777899999999
Q ss_pred ccCCCCCCc-CCcccCCCCCccEEEccCCCCcCCCc----ccccccCCcEEEcc
Q 048831 622 LSGCCKLEN-VPDTLGQVESLEELDISGTATRRPPS----SIFLMKNLKTLSFS 670 (1051)
Q Consensus 622 L~~c~~l~~-lp~~l~~l~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~l~ 670 (1051)
+++|..... .+..++.+++|++|++++|.+...+. .+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999875442 33778899999999999999888876 67889999999875
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=3.9e-12 Score=155.85 Aligned_cols=156 Identities=19% Similarity=0.189 Sum_probs=77.3
Q ss_pred cCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCccc
Q 048831 579 YITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSI 658 (1051)
Q Consensus 579 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l 658 (1051)
.+...|..+..+++|+.|+|++|.. ..+|..+..+++|++|+|++|... .+|..++.+++|+.|+|++|.+..+|..+
T Consensus 212 ~~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 212 RMVMPKDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp ----------CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred ceecChhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 3333344555566666666665543 255555556666666666665433 55666666666666666666666666666
Q ss_pred ccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCC-cCcE
Q 048831 659 FLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLH-SLKE 737 (1051)
Q Consensus 659 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~-~L~~ 737 (1051)
..+++|+.|+|++|.... +|..++++++|+.|+|++|.+. +.+|..+..+. .+..
T Consensus 290 ~~l~~L~~L~L~~N~l~~-----------------------lp~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~~~~~~~~ 345 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTT-----------------------LPWEFGNLCNLQFLGVEGNPLE-KQFLKILTEKSVTGLI 345 (727)
T ss_dssp GGGTTCSEEECCSSCCCC-----------------------CCSSTTSCTTCCCEECTTSCCC-SHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEECCCCCCCc-----------------------cChhhhcCCCccEEeCCCCccC-CCChHHHhhcchhhhH
Confidence 666666666666654321 1444666667777777777664 34444443332 1223
Q ss_pred EeccCCCcee-ccccccCCCCCCEEeccCC
Q 048831 738 LYLSGNNFVT-LPASISGLFNLKYLELEDC 766 (1051)
Q Consensus 738 L~L~~n~l~~-lp~~~~~l~~L~~L~l~~c 766 (1051)
|+|++|.++. +| ..|+.|+++.+
T Consensus 346 l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 346 FYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp HHHHHCCCCCCCC------CC---------
T ss_pred HhhccCcccCcCc------cccceeEeecc
Confidence 5566666542 22 24555555555
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=1.9e-12 Score=158.57 Aligned_cols=150 Identities=21% Similarity=0.232 Sum_probs=99.8
Q ss_pred CCCCCCccCEEEeeCCCCChhhhhhhccCCCCcEEecCCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcCc
Q 048831 482 NFIEVPNLEVLDLKGCTSLREIHSSLLRHNKLILLNLKGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKFP 561 (1051)
Q Consensus 482 ~~~~l~~L~~L~L~~c~~l~~l~~si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p 561 (1051)
.+..+++|+.|+|++|. +..+|..+..+++|+.|+|+++ .+..+|..++.+++|++|+|++|... .+|
T Consensus 219 ~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N----------~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp 286 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN----------SLTELPAEIKNLSNLRVLDLSHNRLT-SLP 286 (727)
T ss_dssp ---CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS----------CCSCCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred hhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC----------cCcccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence 36677777777777754 4467777777778888887763 34456667777888888888887644 778
Q ss_pred hhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCC-CCEEeccCCCCCCcCCcccCCCCC
Q 048831 562 AIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKS-LKTLNLSGCCKLENVPDTLGQVES 640 (1051)
Q Consensus 562 ~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~-L~~L~L~~c~~l~~lp~~l~~l~~ 640 (1051)
..++.+.+|++|+|++|.++.+|..++.+++|+.|+|++|...+.+|..+..+.. +..|++++|.....+|. .
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~ 360 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------E 360 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C
T ss_pred hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------c
Confidence 8888888888888888888888888888888888888888777677765544321 12356777766655554 3
Q ss_pred ccEEEccCC
Q 048831 641 LEELDISGT 649 (1051)
Q Consensus 641 L~~L~l~~~ 649 (1051)
|+.|+++.|
T Consensus 361 l~~l~l~~n 369 (727)
T 4b8c_D 361 RRFIEINTD 369 (727)
T ss_dssp ---------
T ss_pred cceeEeecc
Confidence 455555555
No 137
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.20 E-value=1.2e-10 Score=121.16 Aligned_cols=191 Identities=10% Similarity=0.138 Sum_probs=117.1
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc-ccceEEEeehhhhhhcCCCHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE-FYASSFLADVRERFEKEGSVISL 98 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l 98 (1051)
.|.....++||+..++++.+++.... .+.+.|+|++|+|||++|+++++.+... +.......+.... .+ ...
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~--~~~ 84 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE---RG--IDV 84 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT---TC--HHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc---cC--hHH
Confidence 45566789999999999999997643 2348999999999999999999876433 2322222222111 11 111
Q ss_pred HHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhhHhhC
Q 048831 99 QKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQLLVAHE 176 (1051)
Q Consensus 99 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~ 176 (1051)
..+.+....... .....++.+||+||++.. ...+.+...+.....+.++|+||+........-
T Consensus 85 ~~~~~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l 149 (226)
T 2chg_A 85 VRHKIKEFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (226)
T ss_dssp HHHHHHHHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHH
Confidence 111111111000 001357889999999653 334444443333356778899988753211110
Q ss_pred CCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHH
Q 048831 177 VDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGS 234 (1051)
Q Consensus 177 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~ 234 (1051)
......+++.+++.++..+++.+.+.......+ .+..+.+++.++|+|..+..+..
T Consensus 150 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT--EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCceeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 111227999999999999999887643332221 25667888999999986555443
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=1.4e-10 Score=117.36 Aligned_cols=81 Identities=20% Similarity=0.207 Sum_probs=39.0
Q ss_pred CEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccc-cccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCC
Q 048831 571 SELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPN-SINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGT 649 (1051)
Q Consensus 571 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~ 649 (1051)
+.++++++.++++|..+.. +|+.|++++|......+. .+..+++|++|+|++|......|..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4455555555555554332 555555555543222221 2445555555555555444444444555555555555555
Q ss_pred CCcC
Q 048831 650 ATRR 653 (1051)
Q Consensus 650 ~~~~ 653 (1051)
.+..
T Consensus 89 ~l~~ 92 (192)
T 1w8a_A 89 KIKE 92 (192)
T ss_dssp CCCE
T ss_pred cCCc
Confidence 4443
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.14 E-value=3.1e-10 Score=114.69 Aligned_cols=125 Identities=26% Similarity=0.292 Sum_probs=93.5
Q ss_pred cEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCC
Q 048831 547 RTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCC 626 (1051)
Q Consensus 547 ~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~ 626 (1051)
++++++++. +..+|..+ ..+|++|++++|.++.+|..+.++++|+.|+|++|......+..+.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSC-CSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCC-CCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 456666643 45566543 257888888888888888778888888888888877665555678888888888888877
Q ss_pred CCCcCCcccCCCCCccEEEccCCCCcCCCcc-cccccCCcEEEccCCCC
Q 048831 627 KLENVPDTLGQVESLEELDISGTATRRPPSS-IFLMKNLKTLSFSGCNG 674 (1051)
Q Consensus 627 ~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~ 674 (1051)
.....|..+..+++|+.|++++|.+..+|.. +..+++|+.|++++|+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 6665566788888888888888888887764 66788888888888763
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.13 E-value=2.4e-10 Score=115.57 Aligned_cols=125 Identities=20% Similarity=0.231 Sum_probs=81.6
Q ss_pred cEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCcc--ccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccC
Q 048831 547 RTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSS--IELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSG 624 (1051)
Q Consensus 547 ~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 624 (1051)
++++++++. ++.+|..+.. +|++|++++|.++.++.. +..+++|++|+|++|......|..+.++++|++|+|++
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCC-cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 456666543 3555554332 667777777777666543 66777777777777665555566677777777777777
Q ss_pred CCCCCcCCcccCCCCCccEEEccCCCCcCC-CcccccccCCcEEEccCCCC
Q 048831 625 CCKLENVPDTLGQVESLEELDISGTATRRP-PSSIFLMKNLKTLSFSGCNG 674 (1051)
Q Consensus 625 c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~ 674 (1051)
|......+..+..+++|++|++++|.+..+ |..+..+++|+.|++++|..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 665555555667777777777777776655 55666677777777777654
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=1e-10 Score=129.72 Aligned_cols=253 Identities=14% Similarity=0.132 Sum_probs=158.4
Q ss_pred CCCCcEEEecCcccC--CcccccCcCceEEEEcCCCCCCCCCCC--C--------CCCeeEEEcCccCccccccc-ccCC
Q 048831 397 MTNLRFLNIGNVQLP--EGLEYLSNKLRLLNWHRYPLKSLPSNL--Q--------LDKIVEFQMCYSHIEELWKG-IKPL 463 (1051)
Q Consensus 397 ~~~Lr~L~l~~~~l~--~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~--------~~~L~~L~l~~~~i~~l~~~-~~~l 463 (1051)
+++|+.|++++|++. .+.......++.+.+..+ .+|... . +.+|+.|+++. .++.++.+ +..+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 678888888888765 222212122344444444 455443 5 67788888877 77777665 6777
Q ss_pred CCCCEEecCCCCCCCCCCC-CCCCCccCEEEeeCCC---CChhhh-hhhccCCCCc-EEecCCCCCCCccCCCCCCCCCc
Q 048831 464 NTLKVMKLSHSENLIKTPN-FIEVPNLEVLDLKGCT---SLREIH-SSLLRHNKLI-LLNLKGCTSLTTLPDCKNLSSLP 537 (1051)
Q Consensus 464 ~~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~L~~c~---~l~~l~-~si~~l~~L~-~L~L~~c~~l~~l~~~~~l~~lp 537 (1051)
++|+.++++++......+. |.++.++..+.+.... ....+. ..+..+..|+ .+.+.. ...++
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~------------~~~l~ 191 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA------------MGKLE 191 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECT------------TCCHH
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecC------------CCcHH
Confidence 7888888877654332222 5555555555443210 000000 0111222222 222211 11122
Q ss_pred ccc----ccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCcc-ccCCCCCCEEecCCCCCCCccc-ccc
Q 048831 538 VTI----SSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSS-IELLTGLELLNLNDCKNLVRLP-NSI 611 (1051)
Q Consensus 538 ~~l----~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp-~~i 611 (1051)
..+ ....+++.+.+.+.-....+......+++|+.|++++|.++.+|.. +.++++|+.|++.++ +..++ ..+
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF 269 (329)
T 3sb4_A 192 DEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF 269 (329)
T ss_dssp HHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT
T ss_pred HHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHh
Confidence 111 1355677777776533333333334578999999999999999875 889999999999986 55555 568
Q ss_pred cCCCCCC-EEeccCCCCCCcC-CcccCCCCCccEEEccCCCCcCCCc-ccccccCCcEEEc
Q 048831 612 NGLKSLK-TLNLSGCCKLENV-PDTLGQVESLEELDISGTATRRPPS-SIFLMKNLKTLSF 669 (1051)
Q Consensus 612 ~~L~~L~-~L~L~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l 669 (1051)
.++++|+ .|.+.+ .++.+ +..|.++++|+.|+++++.+..++. .+..+++|+.++.
T Consensus 270 ~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 270 SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8999999 999988 44554 4679999999999999999888865 6777899998863
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=9.4e-11 Score=116.83 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=95.0
Q ss_pred ccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCccccc-ccCCCCCCE
Q 048831 541 SSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNS-INGLKSLKT 619 (1051)
Q Consensus 541 ~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~ 619 (1051)
.++.+|++|++++|... .+|......++|++|++++|.++.+ ..+..+++|++|++++|... .+|.. +..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 34667777777776433 4554433344788888888888877 56778888888888887644 44544 377888888
Q ss_pred EeccCCCCCCcCCc--ccCCCCCccEEEccCCCCcCCCcc----cccccCCcEEEccCCC
Q 048831 620 LNLSGCCKLENVPD--TLGQVESLEELDISGTATRRPPSS----IFLMKNLKTLSFSGCN 673 (1051)
Q Consensus 620 L~L~~c~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~----l~~l~~L~~L~l~~~~ 673 (1051)
|++++|.. +.+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 93 L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 88888754 55665 677888888899988888888775 7888999999888775
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=8.5e-11 Score=117.14 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=40.6
Q ss_pred CCCCCCCEEeccCCCCCCccccc--cccCCCcCcEEeccCCCceecccc----ccCCCCCCEEeccCCc
Q 048831 705 SGLCSLSKLDLSDCGLREGAILS--DICNLHSLKELYLSGNNFVTLPAS----ISGLFNLKYLELEDCK 767 (1051)
Q Consensus 705 ~~l~~L~~L~L~~~~l~~~~~~~--~l~~l~~L~~L~L~~n~l~~lp~~----~~~l~~L~~L~l~~c~ 767 (1051)
..+++|+.|++++|.+.+ +|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 85 ~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCcCCc--chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 455666666666666643 343 566777777777777777777764 6677777777777664
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.11 E-value=6.4e-10 Score=112.40 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=45.9
Q ss_pred CEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCC
Q 048831 571 SELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTA 650 (1051)
Q Consensus 571 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 650 (1051)
+.++++++.++++|..+. ++|+.|++++|.. ..+|..+..+++|+.|++++|......+..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 467777777777776543 4677777776543 3555555566666666665554443333444444555555544444
Q ss_pred CcCC
Q 048831 651 TRRP 654 (1051)
Q Consensus 651 ~~~~ 654 (1051)
+..+
T Consensus 90 l~~i 93 (193)
T 2wfh_A 90 LRCI 93 (193)
T ss_dssp CCBC
T ss_pred cCEe
Confidence 4333
No 145
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=4.1e-10 Score=124.57 Aligned_cols=190 Identities=16% Similarity=0.259 Sum_probs=115.4
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc-ccceEEEeehhhhhhcCCCHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE-FYASSFLADVRERFEKEGSVISL 98 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l 98 (1051)
.|.....++|++..++.+.+++..+. .+.+.|+|++|+||||+|+++++.+... +...+...+... ..+ ...
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~---~~~--~~~ 88 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD---DRG--IDV 88 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS---CCS--HHH
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc---ccC--hHH
Confidence 45566789999999999999987643 2338999999999999999999876432 222222222111 111 111
Q ss_pred HHHHHHHHhccCCCccccchhhHHHHHHhh-CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhh-Hh
Q 048831 99 QKQLLSNLLKLGDISIWHVDDGINIIGSRL-RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQLL-VA 174 (1051)
Q Consensus 99 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~-~~ 174 (1051)
..+++..+.... ..+ .+++.++|+||++.. ...+.+...+....++.++|+||+...-. ..
T Consensus 89 i~~~~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~ 153 (323)
T 1sxj_B 89 VRNQIKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEP 153 (323)
T ss_dssp HHTHHHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhH
Confidence 122222211000 011 346889999999753 33444443333334577888888764321 11
Q ss_pred hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch-HHHHHHH
Q 048831 175 HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL-ALKVLGS 234 (1051)
Q Consensus 175 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~g~ 234 (1051)
.. .....+++.+++.++..+++...+...+...+ .+..+.++++++|.|. |+..+..
T Consensus 154 l~-sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 154 LQ-SQCAILRYSKLSDEDVLKRLLQIIKLEDVKYT--NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-hhceEEeecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 11238999999999999999887643322211 2567789999999995 4554443
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=1.9e-09 Score=107.48 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=24.7
Q ss_pred CEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCC
Q 048831 571 SELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGC 625 (1051)
Q Consensus 571 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c 625 (1051)
+.++++++.++.+|..+. ++|+.|++++|......+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN 62 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC
Confidence 445555555555554332 45555555554432222223344444444444444
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=2.6e-09 Score=106.36 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=53.4
Q ss_pred ceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCCEEec
Q 048831 544 KCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSS-IELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNL 622 (1051)
Q Consensus 544 ~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 622 (1051)
++|++|++++|......+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|......+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 4555555555543333333445555555555555555555443 355555555555555433333333445555555555
Q ss_pred cCCCCCCcCCcccCCCCCccEEEccCCCCcC
Q 048831 623 SGCCKLENVPDTLGQVESLEELDISGTATRR 653 (1051)
Q Consensus 623 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 653 (1051)
++|......+..+..+++|++|++++|.+..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 5543322222223445555555555554433
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=4.1e-12 Score=129.53 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=56.7
Q ss_pred cccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccc
Q 048831 610 SINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNL 689 (1051)
Q Consensus 610 ~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 689 (1051)
.+..+++|++|++++|.. ..+| .+..+++|+.|++++|.+..+|..+..+++|+.|++++|.....
T Consensus 43 ~~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l------------ 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL------------ 108 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH------------
T ss_pred HHhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC------------
Confidence 455555555555555432 2244 45555556666666655555555555555555555555432210
Q ss_pred cccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCcee
Q 048831 690 MRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVT 747 (1051)
Q Consensus 690 l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 747 (1051)
+ .+.++++|+.|++++|.+........+..+++|++|++++|.+..
T Consensus 109 -----------~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 109 -----------S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp -----------H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred -----------C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 1 233445555555555555431112345556666666666665543
No 149
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=6.1e-09 Score=115.27 Aligned_cols=192 Identities=15% Similarity=0.140 Sum_probs=116.3
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc-cceEEEeehhhhhhcCCCHHH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF-YASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
-.|....+++|++..++.+..++..+ ....+.|+|++|+||||+|+++++.+.... .......+.......... .
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~- 94 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-R- 94 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-H-
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-H-
Confidence 45556788999999999999998764 233599999999999999999998764322 111222222111000000 1
Q ss_pred HHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhh-Hh
Q 048831 98 LQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQLL-VA 174 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~-~~ 174 (1051)
+.+....... ....+++.++|+||++.. +..+.+...+.....+.++|+||...... ..
T Consensus 95 ---~~~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 156 (327)
T 1iqp_A 95 ---EKVKEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEP 156 (327)
T ss_dssp ---HHHHHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred ---HHHHHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHH
Confidence 1111110000 001256789999999753 44455544433345677888888765321 11
Q ss_pred hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHHH
Q 048831 175 HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGSF 235 (1051)
Q Consensus 175 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~~ 235 (1051)
.. .....+++.+++.++..+++...+....... ..+..+.|++.++|.|..+..+...
T Consensus 157 l~-sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 157 IQ-SRCAIFRFRPLRDEDIAKRLRYIAENEGLEL--TEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp HH-HTEEEEECCCCCHHHHHHHHHHHHHTTTCEE--CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-hhCcEEEecCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 11 1112789999999999999988764433221 2356778899999999866554443
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=1.1e-11 Score=126.45 Aligned_cols=131 Identities=26% Similarity=0.308 Sum_probs=92.6
Q ss_pred CCCCccccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCccccccc
Q 048831 533 LSSLPVTISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSIN 612 (1051)
Q Consensus 533 l~~lp~~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~ 612 (1051)
++.+|..+..+++|++|++++|.. ..+| .+..+++|++|++++|.++.+|..+..+++|+.|++++|.. ..+| .+.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l-~~l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI-ASLS-GIE 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEEC-CCHH-HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcC-CcCC-ccc
Confidence 445566677777777777777643 3366 66777788888888888887777777777888888887753 3455 577
Q ss_pred CCCCCCEEeccCCCCCCcCC--cccCCCCCccEEEccCCCCcCCCcc-----------cccccCCcEEE
Q 048831 613 GLKSLKTLNLSGCCKLENVP--DTLGQVESLEELDISGTATRRPPSS-----------IFLMKNLKTLS 668 (1051)
Q Consensus 613 ~L~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~-----------l~~l~~L~~L~ 668 (1051)
.+++|+.|++++|... .++ ..+..+++|++|++++|.+...++. +..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7788888888877543 333 3577788888888888876554322 66788888886
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=6.5e-09 Score=115.03 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=38.4
Q ss_pred CCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccc-cccCCCCCC-EEeccCCccccccC
Q 048831 707 LCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPA-SISGLFNLK-YLELEDCKRLQSLP 773 (1051)
Q Consensus 707 l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~-~L~l~~c~~L~~lp 773 (1051)
+++|+.|+|++|++.. .....+.++++|+.|+|.+| ++.++. .+.++++|+ .|.+.+ .++.|+
T Consensus 225 ~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEEC
T ss_pred cCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEc
Confidence 5667777777766642 22234566677777777665 666654 456667777 777665 455554
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.81 E-value=2e-08 Score=99.38 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=45.0
Q ss_pred EEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCC
Q 048831 572 ELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTAT 651 (1051)
Q Consensus 572 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 651 (1051)
.++++++.++.+|..+. ++|+.|+|++|......|..+.++++|+.|+|++|......+..+..+++|+.|++++|.+
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 34444444444444332 4444444444443333344444444555555544432222122234455555555555555
Q ss_pred cCCCcc-cccccCCcEEEccCCC
Q 048831 652 RRPPSS-IFLMKNLKTLSFSGCN 673 (1051)
Q Consensus 652 ~~~~~~-l~~l~~L~~L~l~~~~ 673 (1051)
..+|.. +..+++|+.|++++|+
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC
T ss_pred ceeCHHHhccccCCCEEEeCCCC
Confidence 554443 4445555555555544
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.81 E-value=2.1e-08 Score=98.92 Aligned_cols=103 Identities=23% Similarity=0.239 Sum_probs=45.0
Q ss_pred ecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccC
Q 048831 546 LRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEV-PSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSG 624 (1051)
Q Consensus 546 L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 624 (1051)
.++|+++++. +..+|..+ ..+|++|+|++|.++.+ |..+..+++|++|+|++|......+..+..+++|++|+|++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3455555532 33344333 24455555555555544 23344555555555555443222222234444444444444
Q ss_pred CCCCCcCCcccCCCCCccEEEccCCCC
Q 048831 625 CCKLENVPDTLGQVESLEELDISGTAT 651 (1051)
Q Consensus 625 c~~l~~lp~~l~~l~~L~~L~l~~~~~ 651 (1051)
|......+..+..+++|+.|++++|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 433222222344444444444444443
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.78 E-value=2.3e-07 Score=104.88 Aligned_cols=209 Identities=15% Similarity=0.237 Sum_probs=111.3
Q ss_pred CeeEEEcCccCccccccc-ccCCCCCCEEecCCCCCCCCCCC-CCCCCccCEEEeeCCCCChhhhh-hhccCCCCcEEec
Q 048831 442 KIVEFQMCYSHIEELWKG-IKPLNTLKVMKLSHSENLIKTPN-FIEVPNLEVLDLKGCTSLREIHS-SLLRHNKLILLNL 518 (1051)
Q Consensus 442 ~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~L~~c~~l~~l~~-si~~l~~L~~L~L 518 (1051)
+|+.+.++. .++.+..+ +..+.+|+.+++.++........ |. ..+|+.+.|.. .+..++. .+..+.+|+.+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEec
Confidence 455555553 44444432 45555566665555432222222 32 35555555542 2333332 3334455555555
Q ss_pred CCCCCCCccCCCCCCCCCccccccCceecEEeeeCCCCCCcC-chhhCCCCCCCEEEecCccCc-----ccC-ccccCCC
Q 048831 519 KGCTSLTTLPDCKNLSSLPVTISSLKCLRTLKLSGCSKLKKF-PAIVASMEDLSELYLDGTYIT-----EVP-SSIELLT 591 (1051)
Q Consensus 519 ~~c~~l~~l~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~~-p~~~~~l~~L~~L~L~~~~i~-----~lp-~~i~~l~ 591 (1051)
.. +++.++. ..+.. .+|+.+.+.. .+..+ ...+.++.+|+.+.+.++.+. .++ ..+..++
T Consensus 234 ~~--~l~~I~~--------~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 234 PE--NVSTIGQ--------EAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp CT--TCCEECT--------TTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred CC--CccCccc--------ccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 43 1222221 11222 4566666643 23333 345666777777777666554 343 3467777
Q ss_pred CCCEEecCCCCCCCccc-ccccCCCCCCEEeccCCCCCCcC-CcccCCCCCccEEEccCCCCcCCCcc-cccc-cCCcEE
Q 048831 592 GLELLNLNDCKNLVRLP-NSINGLKSLKTLNLSGCCKLENV-PDTLGQVESLEELDISGTATRRPPSS-IFLM-KNLKTL 667 (1051)
Q Consensus 592 ~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~-l~~l-~~L~~L 667 (1051)
+|+.+.|.+ .+..++ ..+.++++|+.+.|..+ +..+ ...|.++ +|+.+.+.++....++.. +..+ .+++.|
T Consensus 301 ~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l 375 (401)
T 4fdw_A 301 KLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVI 375 (401)
T ss_dssp TCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEE
T ss_pred cCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEE
Confidence 888888774 244443 45677788888888543 4443 3456777 888888888776655432 3334 366777
Q ss_pred EccCC
Q 048831 668 SFSGC 672 (1051)
Q Consensus 668 ~l~~~ 672 (1051)
.+..+
T Consensus 376 ~vp~~ 380 (401)
T 4fdw_A 376 RVPAE 380 (401)
T ss_dssp EECGG
T ss_pred EeCHH
Confidence 76543
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.75 E-value=4.2e-08 Score=108.32 Aligned_cols=260 Identities=20% Similarity=0.151 Sum_probs=141.8
Q ss_pred CCCCCCccccchhHHHHHHHHhcCC---CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTG---STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVI 96 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 96 (1051)
.|.....++|++..++++..++... ....+.|.|+|++|+|||++|+++++.....| ...+.... ..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~----~~~~~~~~----~~-- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL----RVTSGPAI----EK-- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE----EEECTTTC----CS--
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE----EEEecccc----CC--
Confidence 4456788999999999988887531 12336789999999999999999998764322 22221110 00
Q ss_pred HHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH--HHHHHhcCCCCC------------------
Q 048831 97 SLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE--QLQSLAGKRDWF------------------ 156 (1051)
Q Consensus 97 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~------------------ 156 (1051)
..++...+. +.+ .++.+|+|||++... ....+...+...
T Consensus 77 --~~~l~~~l~------------------~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~ 135 (324)
T 1hqc_A 77 --PGDLAAILA------------------NSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLE 135 (324)
T ss_dssp --HHHHHHHHT------------------TTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEE
T ss_pred --hHHHHHHHH------------------Hhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccC
Confidence 011111111 111 245688999997642 222222111100
Q ss_pred CCCCEEEEEeCChhhhHhhCCCC-cceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHHH
Q 048831 157 GLGSRILITTRDKQLLVAHEVDE-EHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGSF 235 (1051)
Q Consensus 157 ~~gs~IiiTTR~~~~~~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~~ 235 (1051)
.++.++|.||.........-... ..++.+.+++.+|..+++...+....... ..+..+.+++++.|+|-.+..+...
T Consensus 136 ~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 136 LPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVAKRLFRR 213 (324)
T ss_dssp CCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred CCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHHHHHHHH
Confidence 12456777776543211100111 13799999999999999988765433222 2356788999999999887776554
Q ss_pred hcC------C---CHHHHHHHHHHhhcCCCchHHHHHHHhccCCChhcccceeeeecccCC--CCHHHHHHHHhhcCCCc
Q 048831 236 LIG------R---SVDQWRSALERLKRDPSNKIMSILQISFDGLQDSEKKIFLDVACFFKQ--KNRDYVTKILEGCGFFP 304 (1051)
Q Consensus 236 L~~------~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~g~~~ 304 (1051)
+.. . +.+....++..+ ...+..+++.++..+..++....+ .....+.+.+.-..-..
T Consensus 214 ~~~~a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl 281 (324)
T 1hqc_A 214 VRDFAQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTL 281 (324)
T ss_dssp HTTTSTTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHH
Confidence 321 1 233333333322 223445666666666554433222 33455554442110001
Q ss_pred chhhhH-hhccCceeEeCCCc
Q 048831 305 VIGIEV-LIERSLLTVDDYNT 324 (1051)
Q Consensus 305 ~~~l~~-L~~~sLi~~~~~~~ 324 (1051)
...++. +++.+++.....++
T Consensus 282 ~~~l~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 282 EEVHEPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp HHHTHHHHHHTTSEEEETTEE
T ss_pred HHHHhHHHHHhcchhcCCccc
Confidence 111232 67788887664443
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.75 E-value=6.2e-07 Score=101.34 Aligned_cols=194 Identities=13% Similarity=0.219 Sum_probs=114.6
Q ss_pred eecEEeeeCCCCCCcCc-hhhCCCCCCCEEEecCccCcccCccccCCCCCCEEecCCCCCCCccc-ccccCCCCCCEEec
Q 048831 545 CLRTLKLSGCSKLKKFP-AIVASMEDLSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLP-NSINGLKSLKTLNL 622 (1051)
Q Consensus 545 ~L~~L~Ls~c~~~~~~p-~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L 622 (1051)
+|+.+.+.. .+..++ ..+.++.+|+.+++..+.++.++.......+|+.+.|..+ +..++ ..+.++++|+.+.+
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 355555543 222222 3456666777777777777776665444567777777642 33333 34666777777777
Q ss_pred cCCCCCCcCCc-ccCCCCCccEEEccCCCCcCC-CcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCcccc
Q 048831 623 SGCCKLENVPD-TLGQVESLEELDISGTATRRP-PSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALM 700 (1051)
Q Consensus 623 ~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 700 (1051)
..+ +..++. .+.+ .+|+.+.+.+ .+..+ ...+..+++|+.+.+.++....... ...-
T Consensus 234 ~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~-----------------~~I~ 292 (401)
T 4fdw_A 234 PEN--VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPE-----------------AMIH 292 (401)
T ss_dssp CTT--CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTT-----------------CEEC
T ss_pred CCC--ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcc-----------------cEEC
Confidence 652 343333 3444 6777777743 34444 3456667778877776654321100 0001
Q ss_pred CCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccc-cccCCCCCCEEeccCCc
Q 048831 701 LPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPA-SISGLFNLKYLELEDCK 767 (1051)
Q Consensus 701 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~c~ 767 (1051)
...+.++++|+.+.|.++ +.. --...+.++++|+.+.|..+ ++.++. .+.++ +|+.+.+.++.
T Consensus 293 ~~aF~~c~~L~~l~l~~~-i~~-I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPES-IRI-LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred HHHhhCCccCCeEEeCCc-eEE-EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 335777888888888843 432 22345677888999988554 677654 56777 89999988874
No 157
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.75 E-value=1.1e-07 Score=104.69 Aligned_cols=188 Identities=10% Similarity=0.111 Sum_probs=115.0
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc-cccceEEEeehhhhhhcCCCHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH-EFYASSFLADVRERFEKEGSVISL 98 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l 98 (1051)
.|....+++|++..++.+.+++..+. ...+.|+|++|+|||++|+++++.+.. .+...+...+.......... ...
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 88 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV-RHK 88 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS-SHH
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH-HHH
Confidence 45556789999999999999887642 334899999999999999999987632 22221222222111000001 111
Q ss_pred HHHHHHHHhccCCCccccchhhHHHHHHhh-CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhHh
Q 048831 99 QKQLLSNLLKLGDISIWHVDDGINIIGSRL-RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQ-LLVA 174 (1051)
Q Consensus 99 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~ 174 (1051)
..++... ..+ .+++.++|+|+++.. +..+.+...+....++.++|+||.... +...
T Consensus 89 ~~~~~~~--------------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 148 (319)
T 2chq_A 89 IKEFART--------------------APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (319)
T ss_dssp HHHHHHS--------------------CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHH
T ss_pred HHHHHhc--------------------CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchH
Confidence 1111100 001 256789999999653 445566666555556778888887653 1111
Q ss_pred hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHH
Q 048831 175 HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLG 233 (1051)
Q Consensus 175 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g 233 (1051)
.. .....+++.+++.++..+++...+...+...+ .+..+.+++.++|.+..+....
T Consensus 149 l~-sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 149 IQ-SRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT--EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HH-TTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC--HHHHHHHHHTTTTCHHHHHHHH
T ss_pred HH-hhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 11 11237999999999999999887644332222 3566788899999997654443
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.74 E-value=4e-08 Score=96.85 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=75.5
Q ss_pred CCEEEecCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCC
Q 048831 570 LSELYLDGTYITEVPSSIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGT 649 (1051)
Q Consensus 570 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~ 649 (1051)
.+.++++++.++.+|..+. ++|+.|+|++|......|..+.++++|++|+|++|......+..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677888888887776653 77888888877666555667777888888888877655444445677888888888888
Q ss_pred CCcCCCcc-cccccCCcEEEccCCCCC
Q 048831 650 ATRRPPSS-IFLMKNLKTLSFSGCNGP 675 (1051)
Q Consensus 650 ~~~~~~~~-l~~l~~L~~L~l~~~~~~ 675 (1051)
.+..+|.. +..+++|+.|++++|+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 87777663 667788888888877643
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.74 E-value=5.4e-08 Score=109.83 Aligned_cols=200 Identities=19% Similarity=0.155 Sum_probs=114.5
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQ 99 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 99 (1051)
.|....+++|++..++.+...+..+. ..+.+.|+|++|+||||+|+++++.+....... . . ..+.... .
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~-~-------~~~~~~~-~ 79 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-A-T-------PCGVCDN-C 79 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-S-S-------CCSSSHH-H
T ss_pred CCCchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-C-C-------CCcccHH-H
Confidence 44556789999999999999887542 235789999999999999999998765332110 0 0 0000000 0
Q ss_pred HHHHHH----HhccCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCC--HHHHHHHhcCCCCCCCCCEEEEEeCC
Q 048831 100 KQLLSN----LLKLGDISIWHVDDGINIIGSRL-----RQQKVLLVIDDVAD--VEQLQSLAGKRDWFGLGSRILITTRD 168 (1051)
Q Consensus 100 ~~ll~~----l~~~~~~~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~ 168 (1051)
..+... +...........+. ...+.+.+ .+++.++|+||++. ....+.+...+.....+..+|++|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp HHHHTSCCSSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred HHHhccCCCceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 001000 00000000001111 22222222 34678999999964 33445554433333456677777765
Q ss_pred hhh-hHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHHH
Q 048831 169 KQL-LVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLGS 234 (1051)
Q Consensus 169 ~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g~ 234 (1051)
..- ..... .....+++.+++.++..+++...+...+...+ .+..+.|++.++|.|..+..+..
T Consensus 159 ~~~l~~~l~-sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~--~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 159 PQKLPVTIL-SRCLQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp GGGSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHSSSCHHHHHHHHH
T ss_pred hHhCcHHHH-hheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHCCCCHHHHHHHHH
Confidence 431 11111 11248999999999999999876633222211 25577899999999987766543
No 160
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.73 E-value=4.7e-08 Score=96.69 Aligned_cols=109 Identities=20% Similarity=0.279 Sum_probs=73.8
Q ss_pred cEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCccc-CccccCCCCCCEEecCCCCCCCcccc-cccCCCCCCEEeccC
Q 048831 547 RTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEV-PSSIELLTGLELLNLNDCKNLVRLPN-SINGLKSLKTLNLSG 624 (1051)
Q Consensus 547 ~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~ 624 (1051)
+.++++++. +..+|..+. .+|++|+|++|.+..+ |..+..+++|++|+|++|... .+|. .+..+++|++|+|++
T Consensus 15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence 456666643 455665443 6777777777777766 445777778888888777543 3443 357788888888887
Q ss_pred CCCCCcCCcccCCCCCccEEEccCCCCcCCCcccc
Q 048831 625 CCKLENVPDTLGQVESLEELDISGTATRRPPSSIF 659 (1051)
Q Consensus 625 c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~l~ 659 (1051)
|......+..+..+++|+.|++++|.+...+..+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~ 125 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccccHH
Confidence 75543333447888888888888888777665443
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.64 E-value=4e-07 Score=91.65 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=43.4
Q ss_pred CCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 21 PKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 21 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+.....++||+.+++++.+.+... ..+.+.|+|++|+|||++|+++++.+..
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hccccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445677999999999999998763 3467899999999999999999987643
No 162
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.62 E-value=7.4e-07 Score=99.18 Aligned_cols=202 Identities=14% Similarity=0.104 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCccccchhHHHHHHHHhcC----------CCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 3 SEFIEEIVNVISSKIHTEPKTVKELVGIESRLEKLRFLMGT----------GSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 3 ~~~i~~i~~~i~~~l~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.++++.|.+++..+ .++....+++|++..+++|.+.+.. .....+.|.|+|++|+|||++|++++...
T Consensus 64 ~~~~~~i~~~i~~~--~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 64 PKMIELIMNEIMDH--GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp HHHHHHHHHHTBCC--SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred hHHHHHHHhhcccC--CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34455555544322 3445567899999999999887642 11235689999999999999999999876
Q ss_pred hccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---------
Q 048831 73 SHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--------- 143 (1051)
Q Consensus 73 ~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--------- 143 (1051)
... ++..+......... .. ..... ...+...-..++.+|+||+++..
T Consensus 142 ~~~----~~~i~~~~l~~~~~--g~-~~~~~-----------------~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 142 GAT----FFSISASSLTSKWV--GE-GEKMV-----------------RALFAVARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp TCE----EEEEEGGGGCCSST--TH-HHHHH-----------------HHHHHHHHHTCSEEEEEETHHHHTBC------
T ss_pred CCe----EEEEehHHhhcccc--ch-HHHHH-----------------HHHHHHHHhcCCeEEEEeCchhhhccCCCCcc
Confidence 432 23333332211110 00 00000 11111112346789999998532
Q ss_pred ----HHHHHHhcCCC----CCCCCCEEEEEeCChhhh-Hh--hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHH
Q 048831 144 ----EQLQSLAGKRD----WFGLGSRILITTRDKQLL-VA--HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYV 212 (1051)
Q Consensus 144 ----~~~~~l~~~~~----~~~~gs~IiiTTR~~~~~-~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 212 (1051)
.....++..+. ....+..||.||...... .. .... ..+.+...+.++..+++...+........ .
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~--~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~ 273 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLV--KRLYIPLPEASARKQIVINLMSKEQCCLS--E 273 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCC--EEEECCCCCHHHHHHHHHHHHHTSCBCCC--H
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCc--eEEEeCCcCHHHHHHHHHHHHhhcCCCcc--H
Confidence 11222222111 112344566677554211 11 1222 27889999999999998877643222111 2
Q ss_pred HHHHHHHHhcCC-CchHHHHHHH
Q 048831 213 ELSKRVLNYASG-LPLALKVLGS 234 (1051)
Q Consensus 213 ~~~~~i~~~~~G-~PLal~~~g~ 234 (1051)
+..+.|++.+.| .+-.+..+..
T Consensus 274 ~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 274 EEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHH
Confidence 456778888888 4556665544
No 163
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=5e-07 Score=105.84 Aligned_cols=222 Identities=14% Similarity=0.216 Sum_probs=119.0
Q ss_pred CCCCCCccccchhHHHHHHHHhcCC---------------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEee
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTG---------------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLAD 84 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 84 (1051)
.|....+++|++..++++..++... .+..+.+.|+|++|+||||+|+++++... + .+...+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~--~~i~in 109 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--Y--DILEQN 109 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--C--EEEEEC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--C--CEEEEe
Confidence 5556788999999999999998641 01347899999999999999999998772 1 222222
Q ss_pred hhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHH--hhCCCeEEEEEeCCCCH--------HHHHHHhcCCC
Q 048831 85 VRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGS--RLRQQKVLLVIDDVADV--------EQLQSLAGKRD 154 (1051)
Q Consensus 85 ~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~--~l~~k~~LlVlDdv~~~--------~~~~~l~~~~~ 154 (1051)
.... .. .......+........ .........+ ...+++.+||+|+++.. ..+..+...
T Consensus 110 ~s~~----~~-~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-- 177 (516)
T 1sxj_A 110 ASDV----RS-KTLLNAGVKNALDNMS-----VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-- 177 (516)
T ss_dssp TTSC----CC-HHHHHHTGGGGTTBCC-----STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--
T ss_pred CCCc----ch-HHHHHHHHHHHhcccc-----HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--
Confidence 2211 11 1122222111110000 0000000000 12357789999999643 223333321
Q ss_pred CCCCCCEEEEEeCChhh--hHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCc-hHHHH
Q 048831 155 WFGLGSRILITTRDKQL--LVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLP-LALKV 231 (1051)
Q Consensus 155 ~~~~gs~IiiTTR~~~~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~ 231 (1051)
.+.+||+++.+... ..... .....+.+.+++.++..+++...+.......+ .+..+.|++.++|.+ -++..
T Consensus 178 ---~~~~iIli~~~~~~~~l~~l~-~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~ 251 (516)
T 1sxj_A 178 ---TSTPLILICNERNLPKMRPFD-RVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINL 251 (516)
T ss_dssp ---CSSCEEEEESCTTSSTTGGGT-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHH
T ss_pred ---cCCCEEEEEcCCCCccchhhH-hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHH
Confidence 23456666654321 11111 11237999999999999999877654332111 134678889999955 44554
Q ss_pred HHHHhc-CC--CHHHHHHHHHHhhcCCCchHHHHH
Q 048831 232 LGSFLI-GR--SVDQWRSALERLKRDPSNKIMSIL 263 (1051)
Q Consensus 232 ~g~~L~-~~--~~~~w~~~l~~l~~~~~~~i~~~l 263 (1051)
+..... .+ +.+....++....+.....+..++
T Consensus 252 L~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~ 286 (516)
T 1sxj_A 252 LSTISTTTKTINHENINEISKAWEKNIALKPFDIA 286 (516)
T ss_dssp HTHHHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHH
T ss_pred HHHHHhcCCCCchHHHHHHHHhhccCCCCCHHHHH
Confidence 433222 11 334444444444444333444433
No 164
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.57 E-value=7.7e-07 Score=95.63 Aligned_cols=171 Identities=13% Similarity=0.093 Sum_probs=96.3
Q ss_pred ccccchhHHHHHHHHhcC--CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc------cceEEEeehhhhhhcCCCHHH
Q 048831 26 ELVGIESRLEKLRFLMGT--GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF------YASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
.+.||+.|+++|...|.. ..+....+.|+|++|+|||++|+++++.+.... .......++..... . ..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t---~-~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG---M-DA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC------HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC---H-HH
Confidence 388999999999877754 234567889999999999999999999875432 11222223222111 1 45
Q ss_pred HHHHHHHHHhccCCCccccchhhHHHHHHhh---CCCeEEEEEeCCCCHHHHHHHhcCCCCC-CCCCE--EEEEeCChhh
Q 048831 98 LQKQLLSNLLKLGDISIWHVDDGINIIGSRL---RQQKVLLVIDDVADVEQLQSLAGKRDWF-GLGSR--ILITTRDKQL 171 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~~~~-~~gs~--IiiTTR~~~~ 171 (1051)
+...++.++... ........+....+.+.+ .++++++|||+++...+-+.+...+.|. ...++ ||.++.....
T Consensus 97 ~~~~I~~~L~g~-~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 97 LYEKIWFAISKE-NLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHHSCC-C--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHhcCC-CCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 677777777532 211111122222232322 4578999999997642211111111110 12333 3333433221
Q ss_pred hH-h------hCCCCcceEEcCCCChhHHHHHHHHhhh
Q 048831 172 LV-A------HEVDEEHILNLDVLNDDEALQLFSMKAF 202 (1051)
Q Consensus 172 ~~-~------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 202 (1051)
.. . .... ...+.+.+++.+|..+++.+++-
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 0 0111 13799999999999999988763
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.54 E-value=5.3e-07 Score=97.32 Aligned_cols=186 Identities=16% Similarity=0.177 Sum_probs=103.6
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCC-----------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhh
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTG-----------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRE 87 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~ 87 (1051)
.+.....+++|++..+++|.+.+... ....+.+.|+|++|+|||++|+++++.....| +......
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~ 86 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSE 86 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGG
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHH
Confidence 34445688999999999998877431 12346799999999999999999998764432 2222222
Q ss_pred hhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH----------------HHHHHHhc
Q 048831 88 RFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV----------------EQLQSLAG 151 (1051)
Q Consensus 88 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~ 151 (1051)
..... . .... . .....+......++.+|+|||++.. ..+..+..
T Consensus 87 ~~~~~-~-~~~~-~-----------------~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~ 146 (285)
T 3h4m_A 87 LVKKF-I-GEGA-S-----------------LVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLA 146 (285)
T ss_dssp GCCCS-T-THHH-H-----------------HHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHH
T ss_pred HHHhc-c-chHH-H-----------------HHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHH
Confidence 11110 0 0000 0 0111122222346689999999653 11222222
Q ss_pred CCC--CCCCCCEEEEEeCChhhhHhhCC---CCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCC-C
Q 048831 152 KRD--WFGLGSRILITTRDKQLLVAHEV---DEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASG-L 225 (1051)
Q Consensus 152 ~~~--~~~~gs~IiiTTR~~~~~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-~ 225 (1051)
... ....+..||.||.........-. .-...+.+...+.++..+++...+.......+ .....+++.+.| .
T Consensus 147 ~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~ 223 (285)
T 3h4m_A 147 EMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCV 223 (285)
T ss_dssp HHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCC
T ss_pred HhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCC
Confidence 111 11235667778775532221100 11137999999999999999887643332211 113556666766 3
Q ss_pred chHHHH
Q 048831 226 PLALKV 231 (1051)
Q Consensus 226 PLal~~ 231 (1051)
|-.+..
T Consensus 224 ~~~i~~ 229 (285)
T 3h4m_A 224 GAELKA 229 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 434443
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.54 E-value=2.9e-09 Score=119.31 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=25.0
Q ss_pred CCCCCCCEEeccCCCCCCc---cccccccCCCcCcEEeccCCCce
Q 048831 705 SGLCSLSKLDLSDCGLREG---AILSDICNLHSLKELYLSGNNFV 746 (1051)
Q Consensus 705 ~~l~~L~~L~L~~~~l~~~---~~~~~l~~l~~L~~L~L~~n~l~ 746 (1051)
...++|+.|+|++|.+.+. .+...+...++|++|+|++|.++
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3445667777777766542 12333445567777777777665
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.53 E-value=2.4e-07 Score=97.19 Aligned_cols=177 Identities=16% Similarity=0.129 Sum_probs=100.7
Q ss_pred CCCCccccch---hHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHH
Q 048831 22 KTVKELVGIE---SRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISL 98 (1051)
Q Consensus 22 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 98 (1051)
...+.|+|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+++++..........++. ....... .
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~--~---- 95 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI--S---- 95 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS--C----
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH--H----
Confidence 4557888743 5556666666543 3478999999999999999999987765533334443 3221110 0
Q ss_pred HHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHHH----HHHHhcCCCCC-CCC-CEEEEEeCChhh-
Q 048831 99 QKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVEQ----LQSLAGKRDWF-GLG-SRILITTRDKQL- 171 (1051)
Q Consensus 99 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~----~~~l~~~~~~~-~~g-s~IiiTTR~~~~- 171 (1051)
.+. + +.+ .++.+||+||++.... .+.+...+... ..+ .++|+||+...-
T Consensus 96 -------------------~~~---~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 96 -------------------TAL---L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPME 151 (242)
T ss_dssp -------------------GGG---G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTT
T ss_pred -------------------HHH---H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHH
Confidence 000 0 011 2456889999854311 22222211100 112 258888874321
Q ss_pred ---h-Hhh--CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHH
Q 048831 172 ---L-VAH--EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLG 233 (1051)
Q Consensus 172 ---~-~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g 233 (1051)
. ... ......++++.+++.++..+++...+....... ..+..+.++++++|.+-.+..+.
T Consensus 152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL--PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC--CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHccCCHHHHHHHH
Confidence 0 000 011113899999999999999988764322221 23567788889999887665543
No 168
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.51 E-value=1.3e-06 Score=96.94 Aligned_cols=181 Identities=17% Similarity=0.116 Sum_probs=106.0
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCC---CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTG---STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSV 95 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 95 (1051)
-.|....+++|++..++++..++... ......|.|+|++|+|||++|+++++.....| ...+.... ..
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~----~~~~~~~~----~~- 93 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI----KTTAAPMI----EK- 93 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE----EEEEGGGC----CS-
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEecchhc----cc-
Confidence 34556788999999999998888642 23345789999999999999999988764432 11111110 00
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCC------------------
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDW------------------ 155 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~------------------ 155 (1051)
..-... .+.+ ..+..+|+||+++.. .....+...+..
T Consensus 94 ~~~~~~---------------------~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3pfi_A 94 SGDLAA---------------------ILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKI 150 (338)
T ss_dssp HHHHHH---------------------HHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCC
T ss_pred hhHHHH---------------------HHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceec
Confidence 000011 1111 234568889999643 222222211110
Q ss_pred CCCCCEEEEEeCChhhhH-hhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHH
Q 048831 156 FGLGSRILITTRDKQLLV-AHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLG 233 (1051)
Q Consensus 156 ~~~gs~IiiTTR~~~~~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g 233 (1051)
..++.++|.||....... .....-...+.+.+++.++..+++...+...... ...+..+.+++.+.|+|-.+..+.
T Consensus 151 ~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 151 DLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 012356776666533211 1111112389999999999999998876433221 123567788889999995555443
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.51 E-value=8.2e-06 Score=92.41 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=45.6
Q ss_pred CCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccc-cccCCCCCCEEeccCCccccccCCCCCCCceE
Q 048831 704 LSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPA-SISGLFNLKYLELEDCKRLQSLPQLPPNVIKV 782 (1051)
Q Consensus 704 l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L 782 (1051)
+.++.+|+.++|..+ +.. --...+.++++|+.+.+..+ ++.++. .+.++++|+.+.+... ++.+. -
T Consensus 316 F~~c~~L~~i~lp~~-v~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~~--------~ 382 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEE-IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQYR--------Y 382 (394)
T ss_dssp TTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGGG--------G
T ss_pred hcCCCCCCEEEeCCc-ccE-EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEhh--------h
Confidence 566677777777543 221 11345667778888887655 666644 5677788888877543 22221 1
Q ss_pred eecCCcccccc
Q 048831 783 SVNGCASLLTL 793 (1051)
Q Consensus 783 ~i~~C~~L~~~ 793 (1051)
...+|++|+.+
T Consensus 383 ~F~~c~~L~~I 393 (394)
T 4fs7_A 383 DFEDTTKFKWI 393 (394)
T ss_dssp GBCTTCEEEEE
T ss_pred eecCCCCCcEE
Confidence 34567776653
No 170
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.49 E-value=4.3e-06 Score=92.76 Aligned_cols=198 Identities=15% Similarity=0.139 Sum_probs=102.6
Q ss_pred HHHHHHHHhhcc--CCCCCCCccccchhHHHHHHHHhcC----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 7 EEIVNVISSKIH--TEPKTVKELVGIESRLEKLRFLMGT----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 7 ~~i~~~i~~~l~--~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+++.+.+...+. .++....+++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 31 KKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp ----------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344445544443 3445567899999999999877621 1122356889999999999999999998743
Q ss_pred cccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHH-HHhhCCCeEEEEEeCCCCHH---------
Q 048831 75 EFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINII-GSRLRQQKVLLVIDDVADVE--------- 144 (1051)
Q Consensus 75 ~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i-~~~l~~k~~LlVlDdv~~~~--------- 144 (1051)
.| +..+........ . .........+ ...-..++.+|+||+++...
T Consensus 111 ~~----~~v~~~~l~~~~---~------------------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~ 165 (355)
T 2qp9_X 111 TF----FSVSSSDLVSKW---M------------------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE 165 (355)
T ss_dssp EE----EEEEHHHHHSCC------------------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CT
T ss_pred CE----EEeeHHHHhhhh---c------------------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcch
Confidence 32 222222211110 0 0011111111 11223577899999997431
Q ss_pred ----HHHHHhcCC---CCCCCCCEEEEEeCChhhhH---hhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHH
Q 048831 145 ----QLQSLAGKR---DWFGLGSRILITTRDKQLLV---AHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVEL 214 (1051)
Q Consensus 145 ----~~~~l~~~~---~~~~~gs~IiiTTR~~~~~~---~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 214 (1051)
....++..+ .....+..||.||....... ...... .+.+...+.++..+++..+......... ...
T Consensus 166 ~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~--~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~ 241 (355)
T 2qp9_X 166 ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFER--RIYIPLPDLAARTTMFEINVGDTPSVLT--KED 241 (355)
T ss_dssp HHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCE--EEECCCCCHHHHHHHHHHHHTTSCBCCC--HHH
T ss_pred HHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCE--EEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHH
Confidence 122222211 11123455666776542111 113333 7889999999999999877643322111 234
Q ss_pred HHHHHHhcCCC-chHHHHHH
Q 048831 215 SKRVLNYASGL-PLALKVLG 233 (1051)
Q Consensus 215 ~~~i~~~~~G~-PLal~~~g 233 (1051)
...|++.+.|. +-.|..+.
T Consensus 242 l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 242 YRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHH
Confidence 56778888884 44455444
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=1.2e-06 Score=97.93 Aligned_cols=200 Identities=12% Similarity=0.158 Sum_probs=113.1
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc--cccceEEEeehhhhhhcCCCHH
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH--EFYASSFLADVRERFEKEGSVI 96 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~~~~~~~~ 96 (1051)
-.|.....++|++..++.+..++..+. ...+.|+|++|+||||+|+++++.+.. .+...+...+... ..+ .
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~---~~~--~ 103 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD---ERG--I 103 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS---CCC--H
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc---ccc--h
Confidence 355566889999999999999987643 233899999999999999999987642 1222222222111 111 1
Q ss_pred HHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhH
Q 048831 97 SLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQ-LLV 173 (1051)
Q Consensus 97 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~ 173 (1051)
....+............. .. . .....-..++-+|++|+++.. .....+...+.......++|++|.... +..
T Consensus 104 ~~~~~~~~~~~~~~~~~~--~~-~--~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 178 (353)
T 1sxj_D 104 SIVREKVKNFARLTVSKP--SK-H--DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178 (353)
T ss_dssp HHHTTHHHHHHHSCCCCC--CT-T--HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHhhhccccc--ch-h--hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcc
Confidence 112222222211100000 00 0 001111245678999998643 333334333322344567887775543 111
Q ss_pred hhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHH
Q 048831 174 AHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLG 233 (1051)
Q Consensus 174 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g 233 (1051)
... .....+.+.+++.++..+.+...+.......+ .+..+.|+++++|.|-.+..+.
T Consensus 179 ~l~-sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 179 PLA-SQCSKFRFKALDASNAIDRLRFISEQENVKCD--DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HHH-HHSEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHTSSCHHHHHHHH
T ss_pred hhh-ccCceEEeCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 111 01127899999999999999887643332221 3567889999999997654443
No 172
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.48 E-value=2.9e-06 Score=92.08 Aligned_cols=197 Identities=19% Similarity=0.214 Sum_probs=110.6
Q ss_pred HHHHHHHhhcc--CCCCCCCccccchhHHHHHHHHhcCC----------CCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 8 EIVNVISSKIH--TEPKTVKELVGIESRLEKLRFLMGTG----------STDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 8 ~i~~~i~~~l~--~~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
++++.|...+. .++....+++|.+..++.+.+.+... ....+.|.|+|++|+||||+|++++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 56777777765 45556688999999999998876320 1234689999999999999999999876432
Q ss_pred ccceEEEeehhhhhhc-CCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-----------
Q 048831 76 FYASSFLADVRERFEK-EGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV----------- 143 (1051)
Q Consensus 76 f~~~~~~~~~~~~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~----------- 143 (1051)
| +..+....... .+......+. .+......++.+|++|+++..
T Consensus 82 ~----~~i~~~~l~~~~~~~~~~~~~~---------------------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~ 136 (297)
T 3b9p_A 82 F----LNISAASLTSKYVGDGEKLVRA---------------------LFAVARHMQPSIIFIDEVDSLLSERSSSEHEA 136 (297)
T ss_dssp E----EEEESTTTSSSSCSCHHHHHHH---------------------HHHHHHHTCSEEEEEETGGGTSBCC-----CC
T ss_pred e----EEeeHHHHhhcccchHHHHHHH---------------------HHHHHHHcCCcEEEeccHHHhccccccCcchH
Confidence 2 22222221111 0110111111 111122346678999998543
Q ss_pred --HH----HHHHhcCCCC-CCCCCEEEEEeCChhhhHh---hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHH
Q 048831 144 --EQ----LQSLAGKRDW-FGLGSRILITTRDKQLLVA---HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVE 213 (1051)
Q Consensus 144 --~~----~~~l~~~~~~-~~~gs~IiiTTR~~~~~~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 213 (1051)
.. +..+...... .+.+..||.||........ ..... .+.+...+.++..+++...+........ .+
T Consensus 137 ~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~--~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~ 212 (297)
T 3b9p_A 137 SRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTK--RVYVSLPDEQTRELLLNRLLQKQGSPLD--TE 212 (297)
T ss_dssp SHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCE--EEECCCCCHHHHHHHHHHHHGGGSCCSC--HH
T ss_pred HHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCe--EEEeCCcCHHHHHHHHHHHHHhcCCCCC--HH
Confidence 11 1112111110 1234456667765421111 12333 6888888888888888776543222211 24
Q ss_pred HHHHHHHhcCCCch-HHHHHH
Q 048831 214 LSKRVLNYASGLPL-ALKVLG 233 (1051)
Q Consensus 214 ~~~~i~~~~~G~PL-al~~~g 233 (1051)
..+.+++.+.|.+- ++..+.
T Consensus 213 ~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 213 ALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHH
Confidence 56678888888875 554443
No 173
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.47 E-value=5.3e-06 Score=90.88 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=105.6
Q ss_pred CCCCCCCccccchhHHHHHHHHhc----------CCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhh
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMG----------TGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRER 88 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 88 (1051)
.++....+++|.+..+++|.+.+. ......+-|.|+|++|+|||++|+++++.....| +..+....
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l 87 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDL 87 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHH
Confidence 444556889999999999988772 1122346799999999999999999998764432 22232221
Q ss_pred hhc-CCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-------------HHHHHhcCCC
Q 048831 89 FEK-EGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE-------------QLQSLAGKRD 154 (1051)
Q Consensus 89 ~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~ 154 (1051)
... .+......+ ..+...-..++.+|+||+++... ....+...+.
T Consensus 88 ~~~~~g~~~~~~~---------------------~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 146 (322)
T 3eie_A 88 VSKWMGESEKLVK---------------------QLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 146 (322)
T ss_dssp HTTTGGGHHHHHH---------------------HHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHG
T ss_pred hhcccchHHHHHH---------------------HHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Confidence 111 000011111 11112223466899999996431 1222222111
Q ss_pred ---CCCCCCEEEEEeCChhhhH---hhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCC-ch
Q 048831 155 ---WFGLGSRILITTRDKQLLV---AHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGL-PL 227 (1051)
Q Consensus 155 ---~~~~gs~IiiTTR~~~~~~---~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PL 227 (1051)
....+..||.||....... ...... .+.+...+.++..+++..++........ ......|++++.|. +-
T Consensus 147 ~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~--~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~ 222 (322)
T 3eie_A 147 GVGNDSQGVLVLGATNIPWQLDSAIRRRFER--RIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGS 222 (322)
T ss_dssp GGGTSCCCEEEEEEESCGGGSCHHHHHHCCE--EEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHH
T ss_pred cccccCCceEEEEecCChhhCCHHHHcccCe--EEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHH
Confidence 1234456666776543211 112333 7889999999999999987744332211 23456777888774 44
Q ss_pred HHHHHH
Q 048831 228 ALKVLG 233 (1051)
Q Consensus 228 al~~~g 233 (1051)
.|..+.
T Consensus 223 di~~l~ 228 (322)
T 3eie_A 223 DIAVVV 228 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 174
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=3.5e-07 Score=101.89 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=35.5
Q ss_pred EeeeCCCCCCcCchhhCCCCCCCEEEecC-ccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCCEEeccCC
Q 048831 549 LKLSGCSKLKKFPAIVASMEDLSELYLDG-TYITEVPS-SIELLTGLELLNLNDCKNLVRLPNSINGLKSLKTLNLSGC 625 (1051)
Q Consensus 549 L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~-~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~c 625 (1051)
+++++++.+..+|. +..+.+|++|+|++ |.+..+|. .+..+++|+.|+|++|......|..+.+|++|+.|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 34444334444555 55555555555553 55555442 3445555555555554433333333444444444444443
No 175
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.44 E-value=2.2e-06 Score=97.99 Aligned_cols=184 Identities=16% Similarity=0.162 Sum_probs=104.3
Q ss_pred CCCccc-cchhHH--HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccc-eEEEeehhhhhhcCCCHHHH
Q 048831 23 TVKELV-GIESRL--EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYA-SSFLADVRERFEKEGSVISL 98 (1051)
Q Consensus 23 ~~~~~v-Gr~~~~--~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l 98 (1051)
..+.|| |..... ..+......... ...+.|+|++|+||||||+++++.+...+.. .+...+.. ..
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~----------~~ 171 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE----------KF 171 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH----------HH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH----------HH
Confidence 345676 654433 334444433322 5679999999999999999999987665432 22222222 12
Q ss_pred HHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH----HHHHHHhcCCCC-CCCCCEEEEEeCChh---
Q 048831 99 QKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV----EQLQSLAGKRDW-FGLGSRILITTRDKQ--- 170 (1051)
Q Consensus 99 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~~--- 170 (1051)
..++...+... ....+.+.+..+.-+|++||++.. ...+.+...+.. ...|..||+||....
T Consensus 172 ~~~~~~~~~~~----------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l 241 (440)
T 2z4s_A 172 LNDLVDSMKEG----------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_dssp HHHHHHHHHTT----------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGC
T ss_pred HHHHHHHHHcc----------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHH
Confidence 23333333311 112334444435678999999532 222222222111 135778999987632
Q ss_pred ------hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHH
Q 048831 171 ------LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKV 231 (1051)
Q Consensus 171 ------~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 231 (1051)
+...+... .++.+++++.++..+++.+.+.......+ .++...|++++.|.+-.+.-
T Consensus 242 ~~l~~~L~sR~~~g--~~i~l~~p~~e~r~~iL~~~~~~~~~~i~--~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 242 SEFQDRLVSRFQMG--LVAKLEPPDEETRKSIARKMLEIEHGELP--EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp SSCCHHHHHHHHSS--BCCBCCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHHhhccCC--eEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHH
Confidence 11112212 37899999999999999887743221111 13466788888888865443
No 176
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.42 E-value=6.6e-07 Score=99.64 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=73.0
Q ss_pred EEEecCc-cCcccCccccCCCCCCEEecCC-CCCCCcccccccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCC
Q 048831 572 ELYLDGT-YITEVPSSIELLTGLELLNLND-CKNLVRLPNSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGT 649 (1051)
Q Consensus 572 ~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~ 649 (1051)
.++++++ .++.+|. +..+++|+.|+|++ |......|..+.+|++|+.|+|++|......|..+..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4567776 7777877 77778888888875 4433333356777888888888887655555666777888888888888
Q ss_pred CCcCCCcccccccCCcEEEccCCCCC
Q 048831 650 ATRRPPSSIFLMKNLKTLSFSGCNGP 675 (1051)
Q Consensus 650 ~~~~~~~~l~~l~~L~~L~l~~~~~~ 675 (1051)
.+..+|..+....+|+.|++.+|...
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 87777766554444888888777654
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=1.5e-06 Score=96.93 Aligned_cols=203 Identities=13% Similarity=0.124 Sum_probs=107.0
Q ss_pred CCCCCCccccchhHHHHHHHHh-cCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhh-----------
Q 048831 20 EPKTVKELVGIESRLEKLRFLM-GTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRE----------- 87 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~----------- 87 (1051)
.|....+++|++..++.+..++ ..+. ... +.|+|+.|+||||+|+.++..+.......+.+.....
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 4556678999999999998888 4432 234 8999999999999999999865332222111110000
Q ss_pred ----------hhhcCCC-HHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCC
Q 048831 88 ----------RFEKEGS-VISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRD 154 (1051)
Q Consensus 88 ----------~~~~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~ 154 (1051)
.....+. .....++++..+....... ... .+ ..+.+++-++|+|+++.. ...+.+...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD-----FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhcccc-----ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 0000000 0001112222221000000 000 00 002336668999999753 22333333222
Q ss_pred CCCCCCEEEEEeCChh-hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHHH
Q 048831 155 WFGLGSRILITTRDKQ-LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVLG 233 (1051)
Q Consensus 155 ~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~g 233 (1051)
...++.++|++|.+.. +...... ....+++.+++.++..+.+...+...+...+. .+..+.|++.++|.+-.+..+.
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~s-R~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKS-QCLLIRCPAPSDSEISTILSDVVTNERIQLET-KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHT-TSEEEECCCCCHHHHHHHHHHHHHHHTCEECC-SHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHh-hceEEecCCcCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHcCCCHHHHHHHH
Confidence 2245678888887642 2221111 11479999999999999998876432221110 2556788899999886554443
No 178
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.42 E-value=3.9e-06 Score=89.16 Aligned_cols=184 Identities=17% Similarity=0.155 Sum_probs=100.7
Q ss_pred CCCCccccchhHHHHHHHHhcC---C-------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhc
Q 048831 22 KTVKELVGIESRLEKLRFLMGT---G-------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEK 91 (1051)
Q Consensus 22 ~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 91 (1051)
....+++|.+...+++.+++.. . ....+.|.|+|++|+|||++|+++++.....| +..+.......
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~~~~~~~~~~ 78 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF----LAMAGAEFVEV 78 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE----EEEETTTTSSS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE----EEechHHHHhh
Confidence 3457799999888888766531 1 12346788999999999999999998765432 22222221111
Q ss_pred CCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-----------------HHHHHhcCCC
Q 048831 92 EGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE-----------------QLQSLAGKRD 154 (1051)
Q Consensus 92 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~ 154 (1051)
..- . . .......+.......+.+|+|||++... .+..+...+.
T Consensus 79 ~~~--~-~-----------------~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 138 (262)
T 2qz4_A 79 IGG--L-G-----------------AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD 138 (262)
T ss_dssp STT--H-H-----------------HHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH
T ss_pred ccC--h-h-----------------HHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh
Confidence 100 0 0 0011112222223457899999997641 1222222111
Q ss_pred C--CCCCCEEEEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch
Q 048831 155 W--FGLGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL 227 (1051)
Q Consensus 155 ~--~~~gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 227 (1051)
. ...+..||.||......... .+. ..+.+...+.++..+++...+........ .......+++.+.|.+-
T Consensus 139 ~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~--~~i~i~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 139 GMGTTDHVIVLASTNRADILDGALMRPGRLD--RHVFIDLPTLQERREIFEQHLKSLKLTQS-STFYSQRLAELTPGFSG 215 (262)
T ss_dssp TCCTTCCEEEEEEESCGGGGGSGGGSTTSCC--EEEECCSCCHHHHHHHHHHHHHHTTCCBT-HHHHHHHHHHTCTTCCH
T ss_pred CcCCCCCEEEEecCCChhhcCHHHhcCCcCC--eEEEeCCcCHHHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHCCCCCH
Confidence 1 12345666677654322111 222 37889999999999999887643332222 12234678888888754
Q ss_pred -HHHHH
Q 048831 228 -ALKVL 232 (1051)
Q Consensus 228 -al~~~ 232 (1051)
.+..+
T Consensus 216 ~~l~~l 221 (262)
T 2qz4_A 216 ADIANI 221 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 44433
No 179
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=4.7e-08 Score=109.38 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=31.8
Q ss_pred cCCCCCCEEeccCCCCCC----cCCcccCCCCCccEEEccCCCCcC-----CCcccccccCCcEEEccCCCC
Q 048831 612 NGLKSLKTLNLSGCCKLE----NVPDTLGQVESLEELDISGTATRR-----PPSSIFLMKNLKTLSFSGCNG 674 (1051)
Q Consensus 612 ~~L~~L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~ 674 (1051)
..+++|++|+|++|.... .++..+...++|++|++++|.+.. +...+...++|++|++++|..
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 344445555555443221 123334445556666666665543 223344556677777777654
No 180
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.40 E-value=9.7e-08 Score=105.85 Aligned_cols=20 Identities=10% Similarity=-0.095 Sum_probs=13.3
Q ss_pred hhhhhhhccCCCCcEEecCC
Q 048831 501 REIHSSLLRHNKLILLNLKG 520 (1051)
Q Consensus 501 ~~l~~si~~l~~L~~L~L~~ 520 (1051)
..+..++..+++|+.|.+.+
T Consensus 129 ~~L~~s~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 129 DGIVENKEKFAHFEGLFWGD 148 (362)
T ss_dssp HHHHTTHHHHTTCSEEEECC
T ss_pred HHHHHhhhhcchhhheeecC
Confidence 34555666777888887754
No 181
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.39 E-value=4e-06 Score=89.59 Aligned_cols=199 Identities=16% Similarity=0.122 Sum_probs=103.7
Q ss_pred CccccchhHHHHHHH-------HhcC-CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHH
Q 048831 25 KELVGIESRLEKLRF-------LMGT-GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVI 96 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 96 (1051)
..++|....++++.. .+.. .....+.+.|+|++|+|||++|+++++.....| +.+ +..... .+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i-~~~~~~--~g~~~ 106 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKI-CSPDKM--IGFSE 106 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEE-ECGGGC--TTCCH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEE-eCHHHh--cCCch
Confidence 468898887766655 2321 234567899999999999999999998754322 112 111110 11000
Q ss_pred HHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH------------HHHHHHhcCCCC---CCCCCE
Q 048831 97 SLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV------------EQLQSLAGKRDW---FGLGSR 161 (1051)
Q Consensus 97 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~------------~~~~~l~~~~~~---~~~gs~ 161 (1051)
... .......+......+..+|+|||++.. ..++.+...+.. .+....
T Consensus 107 ~~~-----------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 107 TAK-----------------CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp HHH-----------------HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred HHH-----------------HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 000 001112222333467889999998643 122333332221 223345
Q ss_pred EEEEeCChhhhHhhCC-CC-cceEEcCCCCh-hHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCC------chHHHHH
Q 048831 162 ILITTRDKQLLVAHEV-DE-EHILNLDVLND-DEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGL------PLALKVL 232 (1051)
Q Consensus 162 IiiTTR~~~~~~~~~~-~~-~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~------PLal~~~ 232 (1051)
||.||........... .. ...+.+.+++. ++..+++.... ... .+....+++.+.|. +-++.++
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~~----~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NFK----DKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CSC----HHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CCC----HHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 6778877654443111 11 23789999988 56666555421 111 24466777788773 3333333
Q ss_pred HHHhcCCCHHHHHHHHHHhhc
Q 048831 233 GSFLIGRSVDQWRSALERLKR 253 (1051)
Q Consensus 233 g~~L~~~~~~~w~~~l~~l~~ 253 (1051)
-..........+..++..+..
T Consensus 243 ~~a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 243 EMSLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp HHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHhhhchHHHHHHHHHHHHH
Confidence 332222234455555555543
No 182
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.38 E-value=9e-06 Score=88.83 Aligned_cols=187 Identities=15% Similarity=0.153 Sum_probs=103.3
Q ss_pred CCCCCCccccchhHHHHHHHHhcC---------C-CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGT---------G-STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERF 89 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 89 (1051)
+.....+++|.+...+.|.+.+.. + ....+.|.|+|++|+|||+||+++++.... ..++..+.....
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~ 83 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLV 83 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHH
Confidence 344557899999988888876631 1 123478999999999999999999987621 112222221111
Q ss_pred hc-CCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-------------HHHHHhcC---
Q 048831 90 EK-EGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE-------------QLQSLAGK--- 152 (1051)
Q Consensus 90 ~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~--- 152 (1051)
.. .+......+. .+...-..++.+|+||+++... ....++..
T Consensus 84 ~~~~g~~~~~~~~---------------------lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~ 142 (322)
T 1xwi_A 84 SKWLGESEKLVKN---------------------LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 142 (322)
T ss_dssp CSSCCSCHHHHHH---------------------HHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHH---------------------HHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhc
Confidence 00 0110111111 1111123567899999997541 11222221
Q ss_pred CCCCCCCCEEEEEeCChhhhH---hhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCC-chH
Q 048831 153 RDWFGLGSRILITTRDKQLLV---AHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGL-PLA 228 (1051)
Q Consensus 153 ~~~~~~gs~IiiTTR~~~~~~---~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLa 228 (1051)
......+..||.||....... ....+. .+.+...+.++..+++..+......... ....+.|++.+.|. +-.
T Consensus 143 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~--~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgad 218 (322)
T 1xwi_A 143 VGVDNDGILVLGATNIPWVLDSAIRRRFEK--RIYIPLPEPHARAAMFKLHLGTTQNSLT--EADFRELGRKTDGYSGAD 218 (322)
T ss_dssp SSSCCTTEEEEEEESCTTTSCHHHHHTCCE--EEECCCCCHHHHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCCHHH
T ss_pred ccccCCCEEEEEecCCcccCCHHHHhhcCe--EEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHH
Confidence 111123445565665432111 113333 7889999999999999877633222111 24567788888887 444
Q ss_pred HHHHHH
Q 048831 229 LKVLGS 234 (1051)
Q Consensus 229 l~~~g~ 234 (1051)
|..+..
T Consensus 219 l~~l~~ 224 (322)
T 1xwi_A 219 ISIIVR 224 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 183
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.35 E-value=1.3e-05 Score=88.09 Aligned_cols=180 Identities=14% Similarity=0.161 Sum_probs=98.3
Q ss_pred CCCCCccc-cchh--HHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHH
Q 048831 21 PKTVKELV-GIES--RLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 21 ~~~~~~~v-Gr~~--~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
....+.|| |... ....+..+..........+.|+|++|+||||||+++++..... ...+...+...
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~~---------- 75 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADD---------- 75 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHH----------
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHHH----------
Confidence 34456676 5433 2344555554433345679999999999999999999977543 22222333222
Q ss_pred HHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----HHHHHhcCCCC-CCCCCEEEEEeCChhh-
Q 048831 98 LQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE----QLQSLAGKRDW-FGLGSRILITTRDKQL- 171 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~~~- 171 (1051)
...++...+... ....+.+.+. +.-+|++||++... ..+.+...+.. ...|.+||+||.....
T Consensus 76 ~~~~~~~~~~~~----------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~ 144 (324)
T 1l8q_A 76 FAQAMVEHLKKG----------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQK 144 (324)
T ss_dssp HHHHHHHHHHHT----------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HHHHHHHHHHcC----------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHH
Confidence 222333332210 1112222222 35688999995432 12222211110 1246678888864321
Q ss_pred --------hHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchH
Q 048831 172 --------LVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLA 228 (1051)
Q Consensus 172 --------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 228 (1051)
....... .++++.+ +.++..+++...+.......+ .+..+.|++++ |..-.
T Consensus 145 l~~l~~~L~sR~~~~--~~i~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 145 LDGVSDRLVSRFEGG--ILVEIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CTTSCHHHHHHHHTS--EEEECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHHH
T ss_pred HHHhhhHhhhcccCc--eEEEeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHHH
Confidence 1111111 3799999 999999999888753332222 35567788888 77643
No 184
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.35 E-value=3.6e-06 Score=84.08 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=43.2
Q ss_pred CCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 21 PKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 21 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+.....++||+.+++++.+.+... ..+.+.|+|++|+|||++|+++++....
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345667999999999999998653 3456799999999999999999987644
No 185
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=3.1e-05 Score=87.60 Aligned_cols=326 Identities=16% Similarity=0.133 Sum_probs=169.6
Q ss_pred eeeechhhhcCCCCCcEEEecCc--ccCCcccccCcCceEEEEcCCCCCCCCCCC--CCCCeeEEEcCccCccccccc-c
Q 048831 386 EVRLSAKAFSLMTNLRFLNIGNV--QLPEGLEYLSNKLRLLNWHRYPLKSLPSNL--QLDKIVEFQMCYSHIEELWKG-I 460 (1051)
Q Consensus 386 ~~~~~~~~f~~~~~Lr~L~l~~~--~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l~~~-~ 460 (1051)
...+...+|..+.+|+.+.+... .+...-+.-..+|+.+++..+ ++.++... .+..|+.+.++.+ +..+... +
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 34567788888888888888542 133332333346777777543 55555443 5566666655533 3333222 3
Q ss_pred cCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCCChhhhh-hhccCCCCcEEecCCCCCCCccCCCCCCCCCc-c
Q 048831 461 KPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTSLREIHS-SLLRHNKLILLNLKGCTSLTTLPDCKNLSSLP-V 538 (1051)
Q Consensus 461 ~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~-si~~l~~L~~L~L~~c~~l~~l~~~~~l~~lp-~ 538 (1051)
..+..++....... .......|.++.+|+.+.+.+ .+..++. .+..+.+|+.+.+.. ++..++ .
T Consensus 137 ~~~~~~~~~~~~~~-~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~-----------~~~~I~~~ 202 (394)
T 4fs7_A 137 KGCDFKEITIPEGV-TVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR-----------NLKIIRDY 202 (394)
T ss_dssp TTCCCSEEECCTTC-CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT-----------TCCEECTT
T ss_pred ecccccccccCccc-cccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC-----------CceEeCch
Confidence 33332222222211 111222377777888887754 2333332 233444555444432 122221 1
Q ss_pred ccccCceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCccCcccC-ccccCCCCCCEEecCCCCCCCcccccccCCCCC
Q 048831 539 TISSLKCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTYITEVP-SSIELLTGLELLNLNDCKNLVRLPNSINGLKSL 617 (1051)
Q Consensus 539 ~l~~l~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L 617 (1051)
.+.++..|+.+.+... ...+........+|+.+.+... +..+. ..+..+.+|+.+.+..+. ...-...+..+..|
T Consensus 203 ~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l 278 (394)
T 4fs7_A 203 CFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGL 278 (394)
T ss_dssp TTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTC
T ss_pred hhccccccceeecCCC--ceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeecccccccccc
Confidence 2344555555555432 2222233334456666666533 23332 235566777777775532 22223345566667
Q ss_pred CEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCC-cccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCC
Q 048831 618 KTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPP-SSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCP 696 (1051)
Q Consensus 618 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 696 (1051)
+.+...... .....+..+.+|+.+.+.++ +..++ ..+..+.+|+.+.|... ....
T Consensus 279 ~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I------------------ 334 (394)
T 4fs7_A 279 KKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEI------------------ 334 (394)
T ss_dssp CEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEE------------------
T ss_pred ceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEE------------------
Confidence 666654421 11234566777777777654 33332 34556777887777532 1100
Q ss_pred ccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEE
Q 048831 697 VALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYL 761 (1051)
Q Consensus 697 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L 761 (1051)
-...+.++.+|+.+++..+ +.. --...+.++++|+.+++..+ ++.+...+.++++|+.+
T Consensus 335 ---~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 335 ---GKRSFRGCTSLSNINFPLS-LRK-IGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp ---CTTTTTTCTTCCEECCCTT-CCE-ECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred ---hHHhccCCCCCCEEEECcc-ccE-ehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 0234677888888888765 321 12345778889999988653 44455556666666553
No 186
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.32 E-value=4e-06 Score=92.25 Aligned_cols=182 Identities=13% Similarity=0.171 Sum_probs=103.5
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQ 99 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 99 (1051)
.|....+++|++..++.+.+++..+. ...++.+.|++|+|||++|+++++.+... ++..+... .+ ....
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~----~~~i~~~~----~~--~~~i 89 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD----MMFVNGSD----CK--IDFV 89 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE----EEEEETTT----CC--HHHH
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC----EEEEcccc----cC--HHHH
Confidence 45667889999999999999998543 34678889999999999999999876422 22222211 11 1111
Q ss_pred HHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH---HHHHHhcCCCCCCCCCEEEEEeCChhhhHhhC
Q 048831 100 KQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE---QLQSLAGKRDWFGLGSRILITTRDKQLLVAHE 176 (1051)
Q Consensus 100 ~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~ 176 (1051)
.+.+....... ...+++-++|+||++... ..+.+...+.....+.++|+||....-....-
T Consensus 90 ~~~~~~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l 153 (324)
T 3u61_B 90 RGPLTNFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPL 153 (324)
T ss_dssp HTHHHHHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTH
T ss_pred HHHHHHHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHH
Confidence 22122111000 012467899999998753 33444433322235678888887653111000
Q ss_pred CCCcceEEcCCCChhHHHHHHH-------HhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 177 VDEEHILNLDVLNDDEALQLFS-------MKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 177 ~~~~~~~~l~~L~~~ea~~Lf~-------~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
.....++++.+++.++..+++. ..+.......+. .+..+.++++++|.+-.+
T Consensus 154 ~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 154 QSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTHH
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHHH
Confidence 0011379999999888544332 222111111110 255667888888877543
No 187
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.32 E-value=6.9e-06 Score=92.67 Aligned_cols=185 Identities=17% Similarity=0.121 Sum_probs=100.7
Q ss_pred CCCCCCccccchhHHHHHHHHhcC----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGT----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERF 89 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 89 (1051)
.+....+++|++..++.|.+++.. .....+.|.|+|++|+|||++|++++.+.... ++..+.....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhh
Confidence 444567899999999999887721 01224689999999999999999998875432 2222221111
Q ss_pred hc-CCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-------------HHHHHHhcCCC-
Q 048831 90 EK-EGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV-------------EQLQSLAGKRD- 154 (1051)
Q Consensus 90 ~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~- 154 (1051)
.. .+...... ...+...-...+.+|+||+++.. .....+...+.
T Consensus 186 ~~~~g~~~~~~---------------------~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 244 (389)
T 3vfd_A 186 SKYVGEGEKLV---------------------RALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDG 244 (389)
T ss_dssp ------CHHHH---------------------HHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHH
T ss_pred ccccchHHHHH---------------------HHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhc
Confidence 00 00000001 11111111335578999999643 01112211111
Q ss_pred ---CCCCCCEEEEEeCChhhhHh---hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCch-
Q 048831 155 ---WFGLGSRILITTRDKQLLVA---HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPL- 227 (1051)
Q Consensus 155 ---~~~~gs~IiiTTR~~~~~~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL- 227 (1051)
.......||.||........ ..+. ..+.+...+.++..+++...+........ .+....+++.+.|..-
T Consensus 245 ~~~~~~~~v~vI~atn~~~~l~~~l~~R~~--~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~ 320 (389)
T 3vfd_A 245 VQSAGDDRVLVMGATNRPQELDEAVLRRFI--KRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGS 320 (389)
T ss_dssp HC-----CEEEEEEESCGGGCCHHHHTTCC--EEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHH
T ss_pred ccccCCCCEEEEEecCCchhcCHHHHcCcc--eEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHH
Confidence 11123455656655322111 1222 26889999999999999877643322221 2456778888888554
Q ss_pred HHHHHH
Q 048831 228 ALKVLG 233 (1051)
Q Consensus 228 al~~~g 233 (1051)
++..+.
T Consensus 321 ~l~~L~ 326 (389)
T 3vfd_A 321 DLTALA 326 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 188
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.28 E-value=9e-06 Score=93.03 Aligned_cols=196 Identities=14% Similarity=0.134 Sum_probs=105.9
Q ss_pred HHHHHhhcc--CCCCCCCccccchhHHHHHHHHhcC----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc
Q 048831 10 VNVISSKIH--TEPKTVKELVGIESRLEKLRFLMGT----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY 77 (1051)
Q Consensus 10 ~~~i~~~l~--~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 77 (1051)
.+.+...+. .++....+++|.+...+.|.+.+.. .....+.|.|+|++|+|||+||+++++....
T Consensus 117 ~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~--- 193 (444)
T 2zan_A 117 QNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN--- 193 (444)
T ss_dssp -------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---
T ss_pred HHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---
Confidence 333344343 3444568899999999998877631 0123478999999999999999999987621
Q ss_pred ceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHH-hhCCCeEEEEEeCCCCH-------------
Q 048831 78 ASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGS-RLRQQKVLLVIDDVADV------------- 143 (1051)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~-~l~~k~~LlVlDdv~~~------------- 143 (1051)
..++..+... + . ...... .......+.+ .-..++.+|+||+++..
T Consensus 194 ~~~~~v~~~~------l----~----~~~~g~-------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 252 (444)
T 2zan_A 194 STFFSISSSD------L----V----SKWLGE-------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR 252 (444)
T ss_dssp SEEEEECCC------------------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGH
T ss_pred CCEEEEeHHH------H----H----hhhcch-------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHH
Confidence 1222222111 1 0 000000 0111122222 22346789999999754
Q ss_pred HHHHHHhcCCCCC---CCCCEEEEEeCChhhhHh---hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHH
Q 048831 144 EQLQSLAGKRDWF---GLGSRILITTRDKQLLVA---HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKR 217 (1051)
Q Consensus 144 ~~~~~l~~~~~~~---~~gs~IiiTTR~~~~~~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~ 217 (1051)
.....++..+... ..+..||.||........ ..+.. .+.+...+.++..+++..+......... ......
T Consensus 253 ~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~--~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~ 328 (444)
T 2zan_A 253 RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEK--RIYIPLPEAHARAAMFRLHLGSTQNSLT--EADFQE 328 (444)
T ss_dssp HHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCE--EEECCCCCHHHHHHHHHHHHTTSCEECC--HHHHHH
T ss_pred HHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcce--EEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHH
Confidence 1233444444322 345566767765432111 12333 7888888999999998877633221111 244567
Q ss_pred HHHhcCCC-chHHHHHH
Q 048831 218 VLNYASGL-PLALKVLG 233 (1051)
Q Consensus 218 i~~~~~G~-PLal~~~g 233 (1051)
|++.+.|. +-.|..+.
T Consensus 329 la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 329 LGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHHHTTTCCHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHH
Confidence 78888884 44554443
No 189
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.27 E-value=2e-05 Score=88.31 Aligned_cols=203 Identities=14% Similarity=0.068 Sum_probs=104.4
Q ss_pred CCccccchhHHHHH---HHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHH
Q 048831 24 VKELVGIESRLEKL---RFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQK 100 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l---~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 100 (1051)
...+||++...+.+ ...+..+....+.+.|+|++|+|||++|+++++.+....... ...................
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT--AIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE--EEEGGGGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc--cccchhhhhcccchhHHHH
Confidence 56899999887764 444444433346899999999999999999999876433221 1111111111111112222
Q ss_pred HHHHHHhcc--------------------C---------CCccccchhhHHHHHHhh-----CCC----eEEEEEeCCCC
Q 048831 101 QLLSNLLKL--------------------G---------DISIWHVDDGINIIGSRL-----RQQ----KVLLVIDDVAD 142 (1051)
Q Consensus 101 ~ll~~l~~~--------------------~---------~~~~~~~~~~~~~i~~~l-----~~k----~~LlVlDdv~~ 142 (1051)
+........ . ........+....+.+.. .++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 222211000 0 000000111222222111 123 35999999975
Q ss_pred H--HHHHHHhcCCCCCCCCCEEEEEeCC------------h-hhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCC
Q 048831 143 V--EQLQSLAGKRDWFGLGSRILITTRD------------K-QLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQP 207 (1051)
Q Consensus 143 ~--~~~~~l~~~~~~~~~gs~IiiTTR~------------~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 207 (1051)
. +....+...+..... ..++++|.. . .+..... .....+.+.+++.++..+++...+......
T Consensus 201 l~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~-sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLL-DRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp SBHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHH-TTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHHH-hhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4 334444443332222 244545531 1 1111111 112368999999999999999876543322
Q ss_pred chHHHHHHHHHHHhcC-CCchHHHHH
Q 048831 208 VEEYVELSKRVLNYAS-GLPLALKVL 232 (1051)
Q Consensus 208 ~~~~~~~~~~i~~~~~-G~PLal~~~ 232 (1051)
. ..+..+.|++++. |.|-.+..+
T Consensus 279 ~--~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 279 M--SEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp B--CHHHHHHHHHHHHHSCHHHHHHH
T ss_pred C--CHHHHHHHHHHhcCCCHHHHHHH
Confidence 2 2356778888887 877655443
No 190
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.26 E-value=9.9e-07 Score=97.70 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=36.9
Q ss_pred cccCCCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCCChhhhhhhc--cCCCCcEEecC
Q 048831 459 GIKPLNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSLL--RHNKLILLNLK 519 (1051)
Q Consensus 459 ~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si~--~l~~L~~L~L~ 519 (1051)
-+..+++|+.|.++++.... ++.+ .+++|++|+|..|..-......+. .+++|+.|+|.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 35667888888887764333 3334 378888888887654333333333 56777777764
No 191
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.24 E-value=4.7e-06 Score=94.92 Aligned_cols=182 Identities=17% Similarity=0.224 Sum_probs=106.1
Q ss_pred CCCCCCCccccchhHH---HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCH
Q 048831 19 TEPKTVKELVGIESRL---EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSV 95 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 95 (1051)
..|.....+||.+..+ +.+...+..+ ....+.|+|++|+||||+|+.+++.....|.. +. .. ..+.
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-a~----~~~~- 88 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVER---IS-AV----TSGV- 88 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-TT----TCCH-
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-ec----cCCH-
Confidence 4567778999999888 6777777654 34689999999999999999999877544321 11 10 1111
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCCEEEE-EeCChh--
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE--QLQSLAGKRDWFGLGSRILI-TTRDKQ-- 170 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Iii-TTR~~~-- 170 (1051)
.. .++++.... .....+++.+|++|+++... +.+.++..+.. ....+|. ||.+..
T Consensus 89 ~~-ir~~~~~a~-----------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~ 148 (447)
T 3pvs_A 89 KE-IREAIERAR-----------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFE 148 (447)
T ss_dssp HH-HHHHHHHHH-----------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGS
T ss_pred HH-HHHHHHHHH-----------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccc
Confidence 11 122211111 11124577899999997542 23333332221 2234444 444432
Q ss_pred hhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCC-----CCchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 171 LLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSH-----QPVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 171 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
+.... .....++.+.+++.++..+++.+.+.... ....-..+..+.++++++|.+-.+..+
T Consensus 149 l~~aL-~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 149 LNSAL-LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp SCHHH-HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred cCHHH-hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 11111 11223789999999999999988764311 112223456778888899988655443
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.20 E-value=1e-05 Score=88.27 Aligned_cols=152 Identities=15% Similarity=0.156 Sum_probs=87.6
Q ss_pred ccccchhHHHHHHHHhcC-------------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhcccc---ceEEEeehhhhh
Q 048831 26 ELVGIESRLEKLRFLMGT-------------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFY---ASSFLADVRERF 89 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~-------------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~~ 89 (1051)
.++|.+...++|.+++.. .......+.|+|++|+|||++|+++++.+..... ..+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 489999998888766541 1233457999999999999999999987644221 122222221111
Q ss_pred hc-CCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCC-----------CHHHHHHHhcCCCCCC
Q 048831 90 EK-EGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVA-----------DVEQLQSLAGKRDWFG 157 (1051)
Q Consensus 90 ~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~-----------~~~~~~~l~~~~~~~~ 157 (1051)
.. .+. . .......+... +.-+|+||+++ .......+...+....
T Consensus 112 ~~~~g~---~------------------~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~ 167 (309)
T 3syl_A 112 GQYIGH---T------------------APKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR 167 (309)
T ss_dssp CSSTTC---H------------------HHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT
T ss_pred hhcccc---c------------------HHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC
Confidence 00 000 0 00111111111 23489999997 3333444444333334
Q ss_pred CCCEEEEEeCChhhhHh--------hCCCCcceEEcCCCChhHHHHHHHHhhhc
Q 048831 158 LGSRILITTRDKQLLVA--------HEVDEEHILNLDVLNDDEALQLFSMKAFK 203 (1051)
Q Consensus 158 ~gs~IiiTTR~~~~~~~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 203 (1051)
.+..||+||........ .... ..+.+.+++.++..+++...+..
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 168 DDLVVILAGYADRMENFFQSNPGFRSRIA--HHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp TTCEEEEEECHHHHHHHHHHSTTHHHHEE--EEEEECCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCChHHHHHHHhhCHHHHHhCC--eEEEcCCcCHHHHHHHHHHHHHH
Confidence 56788888864321111 0122 38999999999999999887643
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.10 E-value=3.4e-05 Score=83.46 Aligned_cols=179 Identities=15% Similarity=0.199 Sum_probs=100.0
Q ss_pred CCCCCCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRER 88 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 88 (1051)
+.....+++|.+..+++|.+++.. +-...+.|.|+|++|+|||++|++++......| +..+..
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~----i~v~~~-- 83 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKGP-- 83 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE----EEECHH--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE----EEEEhH--
Confidence 344457899999998888877642 113346799999999999999999998764322 222211
Q ss_pred hhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHHH----------------HHHHhcC
Q 048831 89 FEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVEQ----------------LQSLAGK 152 (1051)
Q Consensus 89 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~ 152 (1051)
.+. ....... .......+.......+.+|+||+++.... ...++..
T Consensus 84 --------~l~----~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~ 145 (301)
T 3cf0_A 84 --------ELL----TMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTE 145 (301)
T ss_dssp --------HHH----HHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHH
T ss_pred --------HHH----hhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHH
Confidence 111 1111111 11122233333345678999999975321 1222221
Q ss_pred CCC--CCCCCEEEEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCC-chHHHHHHHHHHHhcCC
Q 048831 153 RDW--FGLGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQP-VEEYVELSKRVLNYASG 224 (1051)
Q Consensus 153 ~~~--~~~gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G 224 (1051)
+.. ...+..||.||......... ... ..+.+...+.++..+++..+....... .... ..+++.+.|
T Consensus 146 l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~--~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g 219 (301)
T 3cf0_A 146 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLD--QLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNG 219 (301)
T ss_dssp HHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSC--EEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSS
T ss_pred hhcccCCCCEEEEEecCCccccChHHhcCCccc--eEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCC
Confidence 111 12345677777655322211 233 378999999999999887765332211 1122 344556666
Q ss_pred CchH
Q 048831 225 LPLA 228 (1051)
Q Consensus 225 ~PLa 228 (1051)
.|-+
T Consensus 220 ~sg~ 223 (301)
T 3cf0_A 220 FSGA 223 (301)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 6543
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=3.5e-05 Score=85.14 Aligned_cols=185 Identities=12% Similarity=0.178 Sum_probs=104.8
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc-ccceEEEeehhhhhhcCCCHHHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE-FYASSFLADVRERFEKEGSVISL 98 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l 98 (1051)
.|.....++|.+..++.|...+..+ +...+.++|+.|+||||+|+.++..+... +...+.-.+.. +..+. ..+
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~---~~~~~-~~i 93 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS---DDRGI-DVV 93 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT---SCCSH-HHH
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc---ccccH-HHH
Confidence 4556677899998899998888764 23338999999999999999999876432 21111111111 11111 111
Q ss_pred HHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhHhh
Q 048831 99 QKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQ-LLVAH 175 (1051)
Q Consensus 99 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~ 175 (1051)
. +....+..... .+.+.+-++|+|+++.. ...+.+...+.......++|++|.... +....
T Consensus 94 r-~~i~~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i 157 (340)
T 1sxj_C 94 R-NQIKDFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPAL 157 (340)
T ss_dssp H-THHHHHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred H-HHHHHHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhH
Confidence 1 11111110000 01234678899998642 333334333222235567777776542 11111
Q ss_pred CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHH
Q 048831 176 EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLAL 229 (1051)
Q Consensus 176 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 229 (1051)
... ...+.+.+++.++..+.+...+-......+ .+..+.+++.++|.+-.+
T Consensus 158 ~sR-~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~--~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 158 LSQ-CTRFRFQPLPQEAIERRIANVLVHEKLKLS--PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HTT-SEEEECCCCCHHHHHHHHHHHHHTTTCCBC--HHHHHHHHHHHTTCHHHH
T ss_pred Hhh-ceeEeccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 111 127899999999998888776532222222 245678888999988644
No 195
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.02 E-value=7.5e-05 Score=86.03 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=85.1
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc------cceEEEeehhhhhhcCC
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF------YASSFLADVRERFEKEG 93 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~ 93 (1051)
.+.....+|||+.+++.+...+.... ..-+.|+|++|+|||++|+.++..+...+ ...++..+.... ..+
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~--~~g 250 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTK--YRG 250 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred hcCCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCcc--ccc
Confidence 34455679999999999999987532 34578999999999999999999875432 112222221100 000
Q ss_pred CHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhH
Q 048831 94 SVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQLLV 173 (1051)
Q Consensus 94 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~ 173 (1051)
.........+...-..++.+|++| ...+....+.+.+. ....++|.+|.......
T Consensus 251 ---------------------~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~ 305 (468)
T 3pxg_A 251 ---------------------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRK 305 (468)
T ss_dssp -----------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHH
T ss_pred ---------------------hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHH
Confidence 000111222333334567888899 22222233444332 22356666665443211
Q ss_pred hhCCC-----CcceEEcCCCChhHHHHHHHHhh
Q 048831 174 AHEVD-----EEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 174 ~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
....+ ...++.+...+.++..+++...+
T Consensus 306 ~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 306 YIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11111 12379999999999999998765
No 196
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.95 E-value=4.9e-05 Score=87.43 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=99.5
Q ss_pred CCccccchhHHHHHHHHhcCC-----------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcC
Q 048831 24 VKELVGIESRLEKLRFLMGTG-----------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKE 92 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 92 (1051)
...++|.+..+++|.+++... ....+.|.|+|++|+|||++|+++++.... .++..++.......
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS----EEEEEEHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC----CEEEEEchHhhhhh
Confidence 456899999999998877531 233467999999999999999999887532 22333333322111
Q ss_pred CCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-------------HHHHHHhcCCCC--CC
Q 048831 93 GSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV-------------EQLQSLAGKRDW--FG 157 (1051)
Q Consensus 93 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~ 157 (1051)
. .... ......+.....+++.+|+||+++.. .....|+..+.. ..
T Consensus 279 ~--g~~~------------------~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~ 338 (489)
T 3hu3_A 279 A--GESE------------------SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (489)
T ss_dssp T--THHH------------------HHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT
T ss_pred c--chhH------------------HHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC
Confidence 0 0000 11112233333456789999998321 111222221111 12
Q ss_pred CCCEEEEEeCChhhh-Hhh----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCC-chHHHH
Q 048831 158 LGSRILITTRDKQLL-VAH----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGL-PLALKV 231 (1051)
Q Consensus 158 ~gs~IiiTTR~~~~~-~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~ 231 (1051)
.+.+||.||...... ... .+.. .+.+...+.++..+++..++.......+ ....++++++.|. +-.+..
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~--~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDR--EVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHH
T ss_pred CceEEEEecCCccccCHHHhCCCcCce--EEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHH
Confidence 344566677654221 111 2233 6899999999999999887643222211 1124566666664 434443
Q ss_pred H
Q 048831 232 L 232 (1051)
Q Consensus 232 ~ 232 (1051)
+
T Consensus 414 L 414 (489)
T 3hu3_A 414 L 414 (489)
T ss_dssp H
T ss_pred H
Confidence 3
No 197
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.95 E-value=0.00011 Score=80.85 Aligned_cols=182 Identities=15% Similarity=0.108 Sum_probs=99.7
Q ss_pred hhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHH-----
Q 048831 31 ESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSN----- 105 (1051)
Q Consensus 31 ~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~----- 105 (1051)
+...+.+...+..+ .-.+.+.++|+.|+|||++|+.++..+....... . . ..+. ......+...
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~-~-------~c~~-c~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-H-K-------SCGH-CRGCQLMQAGTHPDY 76 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-T-B-------CCSC-SHHHHHHHHTCCTTE
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-C-C-------CCCC-CHHHHHHhcCCCCCE
Confidence 45556677766543 2346799999999999999999998765332110 0 0 0000 0000000000
Q ss_pred --HhccCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhHhh
Q 048831 106 --LLKLGDISIWHVDDGINIIGSRL-----RQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDKQ-LLVAH 175 (1051)
Q Consensus 106 --l~~~~~~~~~~~~~~~~~i~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~ 175 (1051)
+...........++.. .+.+.+ .+++-++|+|+++.. +....+...+....++..+|++|.+.. +....
T Consensus 77 ~~~~~~~~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATL 155 (334)
T ss_dssp EEECCCTTCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH
T ss_pred EEEeccccCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 0000000000111111 222222 245678899999753 334455554443345677777776653 22222
Q ss_pred CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHHH
Q 048831 176 EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKVL 232 (1051)
Q Consensus 176 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 232 (1051)
... ...+++.+++.++..+++.... .. . .+.+..+++.++|.|..+..+
T Consensus 156 ~SR-c~~~~~~~~~~~~~~~~L~~~~---~~-~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 156 RSR-CRLHYLAPPPEQYAVTWLSREV---TM-S---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp HTT-SEEEECCCCCHHHHHHHHHHHC---CC-C---HHHHHHHHHHTTTCHHHHHHT
T ss_pred hhc-ceeeeCCCCCHHHHHHHHHHhc---CC-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 211 2379999999999999998765 11 1 245578899999999766544
No 198
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00024 Score=78.12 Aligned_cols=173 Identities=16% Similarity=0.261 Sum_probs=98.9
Q ss_pred CCCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhc
Q 048831 23 TVKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEK 91 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 91 (1051)
...++.|.+...++|.+.+.- +-...+-|.++|++|+|||.||+++++.....| +.....+....
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk 221 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQK 221 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcc
Confidence 347788999999888776542 223456799999999999999999999876543 22323222211
Q ss_pred C-CCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHHhcCCC
Q 048831 92 E-GSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE----------------QLQSLAGKRD 154 (1051)
Q Consensus 92 ~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~ 154 (1051)
. |-.....+++.. ..-+..+.+|++|+++..- .+..++..+.
T Consensus 222 ~vGese~~vr~lF~---------------------~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 280 (405)
T 4b4t_J 222 YIGEGSRMVRELFV---------------------MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLD 280 (405)
T ss_dssp STTHHHHHHHHHHH---------------------HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH---------------------HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhh
Confidence 1 111111122211 1123578899999986420 1222322222
Q ss_pred CC--CCCCEEEEEeCChhhhHh-----hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCC-chHHHHHHHHHHHhcCCCc
Q 048831 155 WF--GLGSRILITTRDKQLLVA-----HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQP-VEEYVELSKRVLNYASGLP 226 (1051)
Q Consensus 155 ~~--~~gs~IiiTTR~~~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 226 (1051)
.+ ..+..||.||........ -.++. .+.+...+.++..++|..+.-+.... ..+ .+.+++.+.|.-
T Consensus 281 g~~~~~~V~vIaATNrpd~LDpAllRpGRfD~--~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 281 GFETSKNIKIIMATNRLDILDPALLRPGRIDR--KIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp TTTCCCCEEEEEEESCSSSSCHHHHSTTSSCC--EEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred ccCCCCCeEEEeccCChhhCCHhHcCCCcCce--EEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 11 233445667755433221 13444 89999999999999998776332221 112 345666777654
No 199
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.92 E-value=0.00014 Score=79.95 Aligned_cols=178 Identities=20% Similarity=0.195 Sum_probs=96.7
Q ss_pred CCCCCCccccchhHHHHHHHHhcCC---CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHH
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGTG---STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVI 96 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 96 (1051)
.|.....++|.+..++.+...+..+ ......++|+|+.|+||||||+.++..+...+.. ... ... ....
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~----~sg-~~~---~~~~ 91 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV----TSG-PVL---VKQG 91 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE----EET-TTC---CSHH
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE----Eec-hHh---cCHH
Confidence 3445678999988888877666532 2234679999999999999999999977543211 100 000 0000
Q ss_pred HHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCCC--------C---------
Q 048831 97 SLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDWF--------G--------- 157 (1051)
Q Consensus 97 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~--------~--------- 157 (1051)
++ . .+...+. ++-++++|+++.. ...+.+....... +
T Consensus 92 ~l----------------------~-~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 92 DM----------------------A-AILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp HH----------------------H-HHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC--------------
T ss_pred HH----------------------H-HHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCccccccccc
Confidence 10 0 0111122 2335667877432 2222222111000 0
Q ss_pred -CCCEEE-EEeCChhhhHhhCCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHH
Q 048831 158 -LGSRIL-ITTRDKQLLVAHEVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKV 231 (1051)
Q Consensus 158 -~gs~Ii-iTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 231 (1051)
+...++ .|++...+.......-...+.+++.+.++..+++.+.+-..... ...+.+..|+++++|.|-.+..
T Consensus 148 l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 148 IQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp -CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHH
T ss_pred CCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHH
Confidence 112233 34443332222111111258899999999999998876432222 2235688999999999965443
No 200
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.92 E-value=7.4e-05 Score=78.85 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=94.5
Q ss_pred CCCCCCccccchhHHHHHHHHhcC---C-------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGT---G-------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERF 89 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 89 (1051)
++....+++|.+...+++.+++.. . ....+-|.|+|++|+||||+|+++++.....| +.+ +.....
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i-~~~~~~ 82 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTI-SGSDFV 82 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEE-CSCSST
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEE-eHHHHH
Confidence 344567899999888877665421 1 11234689999999999999999998764332 222 111110
Q ss_pred hcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH----------------HHHHHHhcCC
Q 048831 90 EKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV----------------EQLQSLAGKR 153 (1051)
Q Consensus 90 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~ 153 (1051)
... . . .........+.......+.++++|+++.. ..+..++..+
T Consensus 83 ~~~--------------~---~---~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 142 (257)
T 1lv7_A 83 EMF--------------V---G---VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM 142 (257)
T ss_dssp TSC--------------C---C---CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHH
T ss_pred HHh--------------h---h---hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHh
Confidence 000 0 0 00011112223333446678999998321 1122222111
Q ss_pred CC--CCCCCEEEEEeCChhhhH-hh----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCC-C
Q 048831 154 DW--FGLGSRILITTRDKQLLV-AH----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASG-L 225 (1051)
Q Consensus 154 ~~--~~~gs~IiiTTR~~~~~~-~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-~ 225 (1051)
.. ...+..||.||....... .. ..+ ..+.+...+.++-.+++..+.-......+ .....+++.+.| .
T Consensus 143 ~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~--~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~ 217 (257)
T 1lv7_A 143 DGFEGNEGIIVIAATNRPDVLDPALLRPGRFD--RQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFS 217 (257)
T ss_dssp HTCCSSSCEEEEEEESCTTTSCGGGGSTTSSC--EEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred hCcccCCCEEEEEeeCCchhCCHHHcCCCcCC--eEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCC
Confidence 11 123445666776543221 11 122 37888888888888888766532211111 112345666777 5
Q ss_pred chHHH
Q 048831 226 PLALK 230 (1051)
Q Consensus 226 PLal~ 230 (1051)
+--+.
T Consensus 218 ~~dl~ 222 (257)
T 1lv7_A 218 GADLA 222 (257)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 201
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.90 E-value=0.00086 Score=75.62 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=63.6
Q ss_pred ccCCCCCCEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCCc-ccccccCCcEEEccCCCCCCCCCcccCCccccc
Q 048831 611 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPPS-SIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNL 689 (1051)
Q Consensus 611 i~~L~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 689 (1051)
+.++.+|+.+.+.... ...-...+.++++|+.+.+.. .+..++. .+..+.+|+.+.|..+ ....
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I----------- 325 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQI----------- 325 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEE-----------
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEe-----------
Confidence 4455566666554321 111223455666666666642 2333332 3455667777776532 0000
Q ss_pred cccCCCCccccCCCCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccccccCCCCCCEEecc
Q 048831 690 MRKSSCPVALMLPSLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPASISGLFNLKYLELE 764 (1051)
Q Consensus 690 l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~ 764 (1051)
-...+.++.+|+.+.|..+ +.. --...+.++++|+.+++.++... + ..+..+..|+.+.+.
T Consensus 326 ----------~~~aF~~C~~L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 326 ----------LDDAFAGCEQLERIAIPSS-VTK-IPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVA 386 (394)
T ss_dssp ----------CTTTTTTCTTCCEEEECTT-CCB-CCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC------
T ss_pred ----------hHhHhhCCCCCCEEEECcc-cCE-EhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeC
Confidence 0224677788888888654 321 12345778888888888876432 1 244555666666554
No 202
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00028 Score=78.97 Aligned_cols=176 Identities=17% Similarity=0.286 Sum_probs=99.7
Q ss_pred CCCCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhh
Q 048831 22 KTVKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFE 90 (1051)
Q Consensus 22 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 90 (1051)
....++.|.+...++|.+.+.. +-...+-|.++|++|+|||+||+++++.....| +.....+...
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~s 253 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVD 253 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcc
Confidence 3446788999998888776542 123457899999999999999999999876543 3333332222
Q ss_pred cC-CCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHHhcCC
Q 048831 91 KE-GSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE----------------QLQSLAGKR 153 (1051)
Q Consensus 91 ~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~ 153 (1051)
.. +-.....+.+ ....-...+.+|++|+++..- .+..++..+
T Consensus 254 k~~Gese~~ir~~---------------------F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l 312 (437)
T 4b4t_L 254 KYIGESARIIREM---------------------FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQM 312 (437)
T ss_dssp SSSSHHHHHHHHH---------------------HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH---------------------HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHh
Confidence 11 1101111111 111123578999999986320 122232222
Q ss_pred CC--CCCCCEEEEEeCChhhhHhhCCCC---cceEEcCCCChhHHHHHHHHhhhcCCCC-chHHHHHHHHHHHhcCCCc
Q 048831 154 DW--FGLGSRILITTRDKQLLVAHEVDE---EHILNLDVLNDDEALQLFSMKAFKSHQP-VEEYVELSKRVLNYASGLP 226 (1051)
Q Consensus 154 ~~--~~~gs~IiiTTR~~~~~~~~~~~~---~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 226 (1051)
.. ...+..||.||.........-... ...+.+...+.++..++|..+..+.... ..+ ...+++.+.|.-
T Consensus 313 Dg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 313 DGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp HSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred hcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 11 123456777776554332221111 2378898889888888988776432221 122 245666777654
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.85 E-value=9.8e-05 Score=92.02 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=83.1
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc------cceEEEeehhhhhhcCCCH
Q 048831 22 KTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF------YASSFLADVRERFEKEGSV 95 (1051)
Q Consensus 22 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 95 (1051)
.....+|||+.+++++...+.... .+.+.|+|++|+||||+|+.++.++.... ...++..++.........
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~- 243 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY- 243 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCcc-
Confidence 345679999999999999887532 34578999999999999999999874421 223333322211100000
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHH-HHHHhhC-CCeEEEEEeCCCCHHH-------H---HHHhcCCCCCCCCCEEE
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGIN-IIGSRLR-QQKVLLVIDDVADVEQ-------L---QSLAGKRDWFGLGSRIL 163 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~-~i~~~l~-~k~~LlVlDdv~~~~~-------~---~~l~~~~~~~~~gs~Ii 163 (1051)
......... .+...-. +++.+|++|+++.... + ..+...+. ..+.++|
T Consensus 244 ------------------~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I 303 (854)
T 1qvr_A 244 ------------------RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLI 303 (854)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEE
T ss_pred ------------------chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEE
Confidence 001111111 2222222 3678999999976431 1 11111111 1234566
Q ss_pred EEeCChhhhH---hhC-CCCcceEEcCCCChhHHHHHHHHh
Q 048831 164 ITTRDKQLLV---AHE-VDEEHILNLDVLNDDEALQLFSMK 200 (1051)
Q Consensus 164 iTTR~~~~~~---~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 200 (1051)
.+|....... ... ......+.+.+++.++..+++...
T Consensus 304 ~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp EEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred EecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 6665443211 011 111236899999999999999754
No 204
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.0018 Score=73.05 Aligned_cols=109 Identities=12% Similarity=0.238 Sum_probs=74.0
Q ss_pred cccCCCCCccEEEccCCCCcCCCcccccccCCcEEEccCCCCCCCCCcccCCccccccccCCCCccccCCCCCCCCCCCE
Q 048831 633 DTLGQVESLEELDISGTATRRPPSSIFLMKNLKTLSFSGCNGPPSTASCHLNLPFNLMRKSSCPVALMLPSLSGLCSLSK 712 (1051)
Q Consensus 633 ~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~L~~ 712 (1051)
..+..+.+|+.+.+.++-..--...+.++++|+.+.+...- ... -...+.++.+|+.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i--~~I---------------------~~~aF~~c~~L~~ 315 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRI--TEL---------------------PESVFAGCISLKS 315 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC--CEE---------------------CTTTTTTCTTCCE
T ss_pred ceeeecccccEEecccccceecCcccccccccccccCCCcc--ccc---------------------CceeecCCCCcCE
Confidence 35677888898888765443334456678888888875321 100 0234778889999
Q ss_pred EeccCCCCCCccccccccCCCcCcEEeccCCCceeccc-cccCCCCCCEEeccCCc
Q 048831 713 LDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPA-SISGLFNLKYLELEDCK 767 (1051)
Q Consensus 713 L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~c~ 767 (1051)
++|..+ +.. --...+.++.+|+.+.|..+ ++.++. .+.++++|+.+.+.++.
T Consensus 316 i~lp~~-v~~-I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 316 IDIPEG-ITQ-ILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EECCTT-CCE-ECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEeCCc-ccE-ehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 999764 321 12345778899999999654 777754 67889999999988754
No 205
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00032 Score=78.24 Aligned_cols=173 Identities=17% Similarity=0.225 Sum_probs=97.0
Q ss_pred CCCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhc
Q 048831 23 TVKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEK 91 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 91 (1051)
...++.|.+...++|.+.+.. +-...+-|.++|++|+|||+||+++++.....| +..........
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk 282 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQK 282 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcc
Confidence 346789999998888776431 224467899999999999999999999876543 22222222211
Q ss_pred C-CCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHHhcCCC
Q 048831 92 E-GSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE----------------QLQSLAGKRD 154 (1051)
Q Consensus 92 ~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~ 154 (1051)
. |......+++. ...-...+.+|++|+++..- ....++..+.
T Consensus 283 ~vGesek~ir~lF---------------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 341 (467)
T 4b4t_H 283 YVGEGARMVRELF---------------------EMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLD 341 (467)
T ss_dssp SSSHHHHHHHHHH---------------------HHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH---------------------HHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhh
Confidence 1 11111111111 11223578999999986320 1112222111
Q ss_pred CC--CCCCEEEEEeCChhhhHh-----hCCCCcceEEcCCCChhHHHHHHHHhhhcCCCC-chHHHHHHHHHHHhcCCCc
Q 048831 155 WF--GLGSRILITTRDKQLLVA-----HEVDEEHILNLDVLNDDEALQLFSMKAFKSHQP-VEEYVELSKRVLNYASGLP 226 (1051)
Q Consensus 155 ~~--~~gs~IiiTTR~~~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 226 (1051)
.. ..+..||.||........ -.++. .+++...+.++..++|..+.-+.... .-+ .+.|++.+.|.-
T Consensus 342 g~~~~~~ViVIaATNrpd~LDpALlRpGRFD~--~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 342 GFDPRGNIKVMFATNRPNTLDPALLRPGRIDR--KVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp SSCCTTTEEEEEECSCTTSBCHHHHSTTTCCE--EECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred ccCCCCcEEEEeCCCCcccCChhhhccccccE--EEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 11 123345556654432221 13444 89999999999999998776332221 112 245666777653
No 206
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.83 E-value=5.5e-05 Score=74.93 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=35.2
Q ss_pred CCCcccc----chhHHHHHHHHhcCCC-CCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 23 TVKELVG----IESRLEKLRFLMGTGS-TDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 23 ~~~~~vG----r~~~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..+.|++ ++..++.+.+++..-. ...+.++|+|+.|+||||||++++..+.
T Consensus 8 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 8 NLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455665 3344445555554322 2347899999999999999999999875
No 207
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.83 E-value=0.0004 Score=85.62 Aligned_cols=157 Identities=14% Similarity=0.131 Sum_probs=89.5
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc------cceEEEeehhhhhhcCCCH
Q 048831 22 KTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF------YASSFLADVRERFEKEGSV 95 (1051)
Q Consensus 22 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 95 (1051)
.....++||+.+++++.+.|.... ..-+.|+|.+|+|||++|+.++..+.... ...++..+......
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~----- 255 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA----- 255 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-----
T ss_pred CCCCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc-----
Confidence 345679999999999999987642 35678999999999999999998764321 22233222111100
Q ss_pred HHHHHHHHHHHhccCCCccccchhhHHHHHHhh-CCCeEEEEEeCCCCH----------HHHHH-HhcCCCCCCCCCEEE
Q 048831 96 ISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL-RQQKVLLVIDDVADV----------EQLQS-LAGKRDWFGLGSRIL 163 (1051)
Q Consensus 96 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l-~~k~~LlVlDdv~~~----------~~~~~-l~~~~~~~~~gs~Ii 163 (1051)
... .....+.....+.+.+ ..++.+|++|+++.. .+... +...+. ..+.++|
T Consensus 256 -------------~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I 319 (758)
T 1r6b_X 256 -------------GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVI 319 (758)
T ss_dssp -------------CCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEE
T ss_pred -------------ccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEE
Confidence 000 0011111222222222 345789999999754 22223 333322 2345677
Q ss_pred EEeCChhhhHhhCC-----CCcceEEcCCCChhHHHHHHHHhh
Q 048831 164 ITTRDKQLLVAHEV-----DEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 164 iTTR~~~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
.+|........... .....+.+...+.++..+++...+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 77665432111111 112368999999999998887654
No 208
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.80 E-value=0.0024 Score=71.55 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=35.5
Q ss_pred CCCCCCCCCEEeccCCCCCCccccccccCCCcCcEEeccCCCceeccc-cccCCCCCCEEec
Q 048831 703 SLSGLCSLSKLDLSDCGLREGAILSDICNLHSLKELYLSGNNFVTLPA-SISGLFNLKYLEL 763 (1051)
Q Consensus 703 ~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l 763 (1051)
.+.++++|+.+.+.++.+.. --...+.++.+|+.+.|..+ ++.|+. ++.++++|+.+.+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccccccce-ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 35667777877777665532 12345666777888777543 555544 4455666665554
No 209
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00027 Score=79.07 Aligned_cols=177 Identities=15% Similarity=0.208 Sum_probs=98.5
Q ss_pred CCCCCCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRER 88 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 88 (1051)
+.....++.|.+...++|.+.+.. +-...+-|.++|++|+|||.+|+++++.....| +.......
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l 251 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQL 251 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhh
Confidence 334457899999999888766421 123467899999999999999999999876543 33333322
Q ss_pred hhcC-CCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHHhc
Q 048831 89 FEKE-GSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE----------------QLQSLAG 151 (1051)
Q Consensus 89 ~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~ 151 (1051)
.... |......+.+... .-...+.+|++|+++..- .+..++.
T Consensus 252 ~~~~vGese~~ir~lF~~---------------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~ 310 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFAL---------------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN 310 (434)
T ss_dssp CSSCSSHHHHHHHHHHHH---------------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHH---------------------HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHH
Confidence 2111 1111111222111 112467899999985320 1222333
Q ss_pred CCCCCC--CCCEEEEEeCChhhhHhhCCC---CcceEEcCCCChhHHHHHHHHhhhcCCCC-chHHHHHHHHHHHhcCCC
Q 048831 152 KRDWFG--LGSRILITTRDKQLLVAHEVD---EEHILNLDVLNDDEALQLFSMKAFKSHQP-VEEYVELSKRVLNYASGL 225 (1051)
Q Consensus 152 ~~~~~~--~gs~IiiTTR~~~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~ 225 (1051)
.+..+. .+..||.||.........-.. -...+.+...+.++..++|..+.-+.... .-+ .+.|++.+.|.
T Consensus 311 ~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 311 QLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp HHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred HhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 222222 234555577655433221111 12378999999999889887665332221 112 24566667664
No 210
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.74 E-value=0.00033 Score=79.74 Aligned_cols=175 Identities=19% Similarity=0.205 Sum_probs=97.9
Q ss_pred CCCccccchhHHHHHHHHhcC----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcC
Q 048831 23 TVKELVGIESRLEKLRFLMGT----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKE 92 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 92 (1051)
...+++|.+..++++.+++.. +..-.+-|.|+|++|+|||+||++++.+....| +..+..+.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHH
Confidence 456799999888877766431 111234588999999999999999998764432 222222221111
Q ss_pred CCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH----------------HHHHHHhcCCCCC
Q 048831 93 GSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV----------------EQLQSLAGKRDWF 156 (1051)
Q Consensus 93 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 156 (1051)
. .. ........+.......+.+|+||+++.. ..+..++..+..+
T Consensus 90 ~---g~-----------------~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~ 149 (476)
T 2ce7_A 90 V---GV-----------------GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF 149 (476)
T ss_dssp T---TH-----------------HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS
T ss_pred h---cc-----------------cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc
Confidence 0 00 0011112233333457889999998542 1123333221111
Q ss_pred --CCCCEEEEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCc
Q 048831 157 --GLGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLP 226 (1051)
Q Consensus 157 --~~gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 226 (1051)
..+..||.||......... .++. .+.+...+.++-.+++..++.......+. ....+++.+.|..
T Consensus 150 ~~~~~viVIaaTn~~~~Ld~allR~gRFd~--~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 150 DSKEGIIVMAATNRPDILDPALLRPGRFDK--KIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp CGGGTEEEEEEESCGGGSCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCChhhhchhhcccCccee--EeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 2355677777765433211 2233 78899999888888887766332211111 1344777888877
No 211
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.74 E-value=4.4e-05 Score=72.54 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=35.9
Q ss_pred ccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 26 ELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
+++|+...++++.+.+..-.....-|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999888775322222457899999999999999998854
No 212
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.73 E-value=0.00012 Score=79.58 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=38.6
Q ss_pred CccccchhHHHHHHHHhcC------------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 25 KELVGIESRLEKLRFLMGT------------GSTDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~------------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..++|++..++.+...+.. .......+.|+|++|+|||++|+++++....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3589999999888777643 0112356889999999999999999987743
No 213
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.73 E-value=0.00047 Score=84.87 Aligned_cols=152 Identities=15% Similarity=0.140 Sum_probs=85.3
Q ss_pred CCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc------cceEEEeehhhhhhcCCC
Q 048831 21 PKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF------YASSFLADVRERFEKEGS 94 (1051)
Q Consensus 21 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~ 94 (1051)
+.....+|||+.+++++...+.... ..-+.|+|++|+|||++|+.+++.+.... ...++..+. .....+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--g~~~~G- 250 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--GTKYRG- 250 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred hCCCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--cccccc-
Confidence 3445679999999999999987532 34578999999999999999999864321 112222211 000000
Q ss_pred HHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhHh
Q 048831 95 VISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQLLVA 174 (1051)
Q Consensus 95 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~ 174 (1051)
.........+......++.+|++| ...+....+.+.+. ....++|.||........
T Consensus 251 --------------------~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~ 306 (758)
T 3pxi_A 251 --------------------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKY 306 (758)
T ss_dssp ----------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHH
T ss_pred --------------------hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHH
Confidence 001112223333334577889999 22222333444433 234566766655442111
Q ss_pred hCCC-----CcceEEcCCCChhHHHHHHHHhh
Q 048831 175 HEVD-----EEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 175 ~~~~-----~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
...+ ....+.+...+.++..+++....
T Consensus 307 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1111 11379999999999999998654
No 214
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00065 Score=74.95 Aligned_cols=177 Identities=16% Similarity=0.232 Sum_probs=97.8
Q ss_pred CCCCCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhh
Q 048831 21 PKTVKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERF 89 (1051)
Q Consensus 21 ~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 89 (1051)
.....++.|.+...++|.+.+.. +-...+-|.++|++|+|||.||+++++.....| +.....+..
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~ 253 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELI 253 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGC
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhh
Confidence 33446788999988888776532 123457899999999999999999999876543 222222222
Q ss_pred hcC-CCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH----------------HHHHHHhcC
Q 048831 90 EKE-GSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV----------------EQLQSLAGK 152 (1051)
Q Consensus 90 ~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~ 152 (1051)
... +......+++.. ..-+..+.+|++|+++.. ..+..++..
T Consensus 254 sk~vGesek~ir~lF~---------------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~ 312 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFK---------------------VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ 312 (437)
T ss_dssp CSSSSHHHHHHHHHHH---------------------HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHH---------------------HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH
Confidence 111 111111122211 111346789999988631 012222221
Q ss_pred CCCC--CCCCEEEEEeCChhhhHhhCCC---CcceEEcCCCChhHHHHHHHHhhhcCCCC-chHHHHHHHHHHHhcCCCc
Q 048831 153 RDWF--GLGSRILITTRDKQLLVAHEVD---EEHILNLDVLNDDEALQLFSMKAFKSHQP-VEEYVELSKRVLNYASGLP 226 (1051)
Q Consensus 153 ~~~~--~~gs~IiiTTR~~~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 226 (1051)
+... ..+..||.||.........-.. -...+.+...+.++..++|..+.-+.... ..+ .+.|++.+.|.-
T Consensus 313 lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 313 LDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp HHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred hhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 1111 2334556677655443322221 12368888889888889998776332221 112 245566666643
No 215
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00029 Score=78.73 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=41.7
Q ss_pred CCCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 23 TVKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
...++.|.+...++|.+.+.. +-...+-|.++|++|+|||++|+++++.....
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 346789999998888776532 22345779999999999999999999987654
No 216
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.63 E-value=6.4e-05 Score=79.93 Aligned_cols=56 Identities=23% Similarity=0.221 Sum_probs=41.5
Q ss_pred CCCCCCccccchhHHHHHHHHhcC----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGT----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
++....+++|.+..++++.+++.. +....+-|.|+|++|+|||++|+++++.....
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 344557899999988888776641 11122448899999999999999999876543
No 217
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.56 E-value=0.01 Score=66.31 Aligned_cols=276 Identities=16% Similarity=0.158 Sum_probs=136.8
Q ss_pred eeeechhhhcCCCCCcEEEecCc--ccCCcccccCcCceEEEEcCCCCCCCCCCC-CCCCeeEEEcCccCcccccccccC
Q 048831 386 EVRLSAKAFSLMTNLRFLNIGNV--QLPEGLEYLSNKLRLLNWHRYPLKSLPSNL-QLDKIVEFQMCYSHIEELWKGIKP 462 (1051)
Q Consensus 386 ~~~~~~~~f~~~~~Lr~L~l~~~--~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~ 462 (1051)
...+...+|..+.+|+.+.+..+ .+...-+.-. +|..+.+.. .++.++... ...+|+.+.++.+ +..+....-.
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~-~~~i~~~~F~ 133 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVASTVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA-TTEIGNYIFY 133 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECTTCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTT
T ss_pred ccChHHHHhhCCCCCCEEEeCCcceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCCc-cccccccccc
Confidence 45677889999999999998543 1222222212 455555543 244454433 4456777777654 3344333222
Q ss_pred CCCCCEEecCCCCCCCCCCCCCCCCccCEEEeeCCCCChhhhhhh-ccCCCCcEEecCCCCCCCccCCCCCCCCC-cccc
Q 048831 463 LNTLKVMKLSHSENLIKTPNFIEVPNLEVLDLKGCTSLREIHSSL-LRHNKLILLNLKGCTSLTTLPDCKNLSSL-PVTI 540 (1051)
Q Consensus 463 l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~si-~~l~~L~~L~L~~c~~l~~l~~~~~l~~l-p~~l 540 (1051)
-..|+.+.+..+-.......|..+.+|+.+.+............. .............|..+..+........+ ...+
T Consensus 134 ~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f 213 (379)
T 4h09_A 134 NSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGF 213 (379)
T ss_dssp TCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTT
T ss_pred cceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeeccc
Confidence 234555555443222223346667777777766533211111100 01111111122223222222111111111 1223
Q ss_pred ccCceecEEeeeCCCCCCcC-chhhCCCCCCCEEEecCccCcccCc-cccCCCCCCEEecCCCCCCCccc-ccccCCCCC
Q 048831 541 SSLKCLRTLKLSGCSKLKKF-PAIVASMEDLSELYLDGTYITEVPS-SIELLTGLELLNLNDCKNLVRLP-NSINGLKSL 617 (1051)
Q Consensus 541 ~~l~~L~~L~Ls~c~~~~~~-p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L 617 (1051)
..+.+|+.+.+... +..+ ...+..+.+|+.+.+..+ ++.+.. .+.++.+|+.+.+... +..++ ..+.++++|
T Consensus 214 ~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 214 SYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTC
T ss_pred ccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccccc
Confidence 34556666666532 2222 234556677777777654 555533 3566777777777542 33333 345667777
Q ss_pred CEEeccCCCCCCcCCcccCCCCCccEEEccCCCCcCCC-cccccccCCcEEEcc
Q 048831 618 KTLNLSGCCKLENVPDTLGQVESLEELDISGTATRRPP-SSIFLMKNLKTLSFS 670 (1051)
Q Consensus 618 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~ 670 (1051)
+.+.+.++.....-...+.++.+|+.+.+..+ +..+. ..+.++.+|+.+.+.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 77777654332222345677777777777543 33332 244556666666553
No 218
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.55 E-value=7.1e-05 Score=72.43 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=45.4
Q ss_pred ceecEEeeeCCCCCCcCchhhCCCCCCCEEEecCcc-Cccc-CccccCC----CCCCEEecCCCCCCCcc-cccccCCCC
Q 048831 544 KCLRTLKLSGCSKLKKFPAIVASMEDLSELYLDGTY-ITEV-PSSIELL----TGLELLNLNDCKNLVRL-PNSINGLKS 616 (1051)
Q Consensus 544 ~~L~~L~Ls~c~~~~~~p~~~~~l~~L~~L~L~~~~-i~~l-p~~i~~l----~~L~~L~L~~~~~l~~l-p~~i~~L~~ 616 (1051)
..|+.|++++|.....--..+..+++|++|+|++|. ++.- -..+..+ ++|++|+|++|..++.- -..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777776443333344566666666666653 4421 1122222 35666666666544331 122445666
Q ss_pred CCEEeccCCCCCC
Q 048831 617 LKTLNLSGCCKLE 629 (1051)
Q Consensus 617 L~~L~L~~c~~l~ 629 (1051)
|++|+|++|..++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 6666666665544
No 219
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.51 E-value=0.00023 Score=71.92 Aligned_cols=62 Identities=11% Similarity=0.121 Sum_probs=41.5
Q ss_pred CCCCccccchh----HHHHHHHHhcCCCC--CeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 22 KTVKELVGIES----RLEKLRFLMGTGST--DVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 22 ~~~~~~vGr~~----~~~~l~~~L~~~~~--~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
...+.|++.+. .++.+.+++..... ..+.+.|+|++|+|||+||+++++....+....+++.
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45677887553 33445555543321 1268999999999999999999998766544444443
No 220
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.49 E-value=0.00078 Score=72.26 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=25.5
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..++.+.|+|++|+|||+||+++++.....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345789999999999999999999987443
No 221
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.46 E-value=2.7e-05 Score=77.54 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=26.9
Q ss_pred CceecEEeeeCC-CCCC----cCchhhCCCCCCCEEEecCccCcc-----cCccccCCCCCCEEecCCCC
Q 048831 543 LKCLRTLKLSGC-SKLK----KFPAIVASMEDLSELYLDGTYITE-----VPSSIELLTGLELLNLNDCK 602 (1051)
Q Consensus 543 l~~L~~L~Ls~c-~~~~----~~p~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~ 602 (1051)
.++|++|+|++| .... .+...+...++|++|+|++|.+.. +...+...++|++|+|++|.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 444555555554 2221 123334444555555555555542 22333344455555555544
No 222
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.45 E-value=0.0014 Score=68.71 Aligned_cols=54 Identities=28% Similarity=0.304 Sum_probs=37.8
Q ss_pred CCCCCCccccchhHHHHHHHHhcC--C--------CCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGT--G--------STDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+.....+++|.+...+++..+... . -.-.+-+.|+|++|+||||||++++....
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 344557889998777666554321 0 01122389999999999999999998765
No 223
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.44 E-value=4.1e-05 Score=76.17 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=88.8
Q ss_pred CchhhCCCCCCCEEEecCc-cCc-----ccCccccCCCCCCEEecCCCCCCCc----ccccccCCCCCCEEeccCCCCCC
Q 048831 560 FPAIVASMEDLSELYLDGT-YIT-----EVPSSIELLTGLELLNLNDCKNLVR----LPNSINGLKSLKTLNLSGCCKLE 629 (1051)
Q Consensus 560 ~p~~~~~l~~L~~L~L~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~i~~L~~L~~L~L~~c~~l~ 629 (1051)
+...+...+.|++|+|++| .+. .+...+...++|++|+|++|..... +...+...++|++|+|++|....
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4456778899999999999 886 3456677789999999999875432 34456667899999999987653
Q ss_pred c----CCcccCCCCCccEEEc--cCCCCcC-----CCcccccccCCcEEEccCCC
Q 048831 630 N----VPDTLGQVESLEELDI--SGTATRR-----PPSSIFLMKNLKTLSFSGCN 673 (1051)
Q Consensus 630 ~----lp~~l~~l~~L~~L~l--~~~~~~~-----~~~~l~~l~~L~~L~l~~~~ 673 (1051)
. +...+...++|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 2 4566778889999999 7788764 34556667999999999876
No 224
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.43 E-value=0.00092 Score=76.73 Aligned_cols=50 Identities=26% Similarity=0.287 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHHHh---cCCCCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 24 VKELVGIESRLEKLRFLM---GTGSTDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L---~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
...++|.+...+.+..++ ..+....+-+.++|++|+|||++|+++++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 378999998877655544 33333346789999999999999999998775
No 225
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.41 E-value=0.0017 Score=69.08 Aligned_cols=54 Identities=28% Similarity=0.300 Sum_probs=38.4
Q ss_pred CCCCCCccccchhHHHHHHHHhcC--C-------C-CCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMGT--G-------S-TDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
++....+++|.+...+++..+... . + .-.+-+.|+|+.|+||||||++++....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 444557899998877776655421 0 0 1112389999999999999999998765
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.38 E-value=0.00075 Score=73.34 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=38.9
Q ss_pred ccccchhHHHHHHHHhcCC------C-CCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 26 ELVGIESRLEKLRFLMGTG------S-TDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~~------~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
.++|.+..++.+...+... . .....+.|+|++|+|||++|+.++......
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 4789999988887776532 1 123589999999999999999999976543
No 227
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.37 E-value=8.1e-05 Score=72.02 Aligned_cols=16 Identities=44% Similarity=0.499 Sum_probs=7.3
Q ss_pred CCCCCCEEeccCCccc
Q 048831 754 GLFNLKYLELEDCKRL 769 (1051)
Q Consensus 754 ~l~~L~~L~l~~c~~L 769 (1051)
.+++|+.|+|++|+.+
T Consensus 137 ~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGV 152 (176)
T ss_dssp GCTTCCEEEEESCTTC
T ss_pred cCCCCCEEECCCCCCC
Confidence 3444444444444433
No 228
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=0.001 Score=71.55 Aligned_cols=146 Identities=14% Similarity=0.053 Sum_probs=85.3
Q ss_pred cchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHh---ccccceEEEeehhhhhhcCCCHHHHHHHHHHH
Q 048831 29 GIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLIS---HEFYASSFLADVRERFEKEGSVISLQKQLLSN 105 (1051)
Q Consensus 29 Gr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 105 (1051)
|-+.-++.|.+.+..+. .....++|+.|+||||+|+++++... ........+. ... ...+ .+..+++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~~--~~~~--id~ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PEG--ENIG--IDDIRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CSS--SCBC--HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CCc--CCCC--HHHHHHHHHH
Confidence 45566778888887653 67899999999999999999987531 1122222222 100 0011 1222233333
Q ss_pred HhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhHhhCCCCcce
Q 048831 106 LLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDWFGLGSRILITTRDK-QLLVAHEVDEEHI 182 (1051)
Q Consensus 106 l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~ 182 (1051)
+.... ..+++-++|+|+++.. ...+.|+..+....+.+.+|++|.+. .+....... +
T Consensus 74 ~~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~ 133 (305)
T 2gno_A 74 LNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---V 133 (305)
T ss_dssp HTSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---S
T ss_pred Hhhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---e
Confidence 22000 1235568889999653 44555555444345677887777554 333222222 7
Q ss_pred EEcCCCChhHHHHHHHHhh
Q 048831 183 LNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 183 ~~l~~L~~~ea~~Lf~~~a 201 (1051)
+++.+++.++..+.+.+.+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999999999998765
No 229
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.32 E-value=7.2e-05 Score=70.81 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=33.9
Q ss_pred CccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 25 KELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
-.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+++++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 358999999988887765311122458899999999999999988754
No 230
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.29 E-value=0.0007 Score=71.65 Aligned_cols=50 Identities=20% Similarity=0.128 Sum_probs=34.7
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 24 VKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
...++|.+..+.++.+.+..-......|.|+|.+|+|||++|+++++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 45689999998888766543112235688999999999999999998654
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.28 E-value=0.00082 Score=81.02 Aligned_cols=173 Identities=17% Similarity=0.208 Sum_probs=95.7
Q ss_pred CCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcC
Q 048831 24 VKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKE 92 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 92 (1051)
..++.|.+..+++|.+.+.. +-...+-|.++|++|+|||+||+++++..... .+..+..+.....
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhccc
Confidence 35688999988888776531 11345789999999999999999999876543 3434333322111
Q ss_pred -CCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-------------HHHHHhcCCCCC--
Q 048831 93 -GSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADVE-------------QLQSLAGKRDWF-- 156 (1051)
Q Consensus 93 -~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~-- 156 (1051)
+-... .....+....+..+.+|+||+++..- ....++..+...
T Consensus 279 ~gese~---------------------~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 279 AGESES---------------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp TTHHHH---------------------HHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG
T ss_pred chHHHH---------------------HHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc
Confidence 11011 11122223335678999999985320 122222211111
Q ss_pred CCCCEEEEEeCChhhhH-hh----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhcCCCc
Q 048831 157 GLGSRILITTRDKQLLV-AH----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYASGLP 226 (1051)
Q Consensus 157 ~~gs~IiiTTR~~~~~~-~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 226 (1051)
..+..||.||....... .. .++. .+++...+.++-.+++..+..+.....+ .-...|++.+.|.-
T Consensus 338 ~~~V~VIaaTN~~d~LD~ALrR~GRFd~--~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDR--EVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp GGCEEEEEECSSTTTSCTTTTSTTSSCE--EEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCC
T ss_pred cCCEEEEEecCChhhcCHHHhCCcccce--EEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCC
Confidence 12334455665443221 11 2333 7999999999999999876532221111 11345667777754
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.24 E-value=0.0016 Score=70.11 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=37.6
Q ss_pred CccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 25 KELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..++|+...++++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999998887775422223468899999999999999999854
No 233
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.15 E-value=0.0014 Score=75.02 Aligned_cols=174 Identities=18% Similarity=0.189 Sum_probs=94.0
Q ss_pred CCCCCCccccchhHHHHHHHHhc---CC-------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhh
Q 048831 20 EPKTVKELVGIESRLEKLRFLMG---TG-------STDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERF 89 (1051)
Q Consensus 20 ~~~~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 89 (1051)
+.....+++|.+...+++.++.. .. ..-.+-|.|+|++|+||||||++++...... .+..+.....
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~----~i~i~g~~~~ 101 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP----FITASGSDFV 101 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC----EEEEEGGGGT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----EEEEehhHHH
Confidence 33455789999988877766543 11 0112348999999999999999999876422 2222222211
Q ss_pred hcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhC----CCeEEEEEeCCCCH----------------HHHHHH
Q 048831 90 EKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLR----QQKVLLVIDDVADV----------------EQLQSL 149 (1051)
Q Consensus 90 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~----~k~~LlVlDdv~~~----------------~~~~~l 149 (1051)
... . ......+...++ ..+.++++|+++.. ..+..+
T Consensus 102 ~~~-~-----------------------g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~L 157 (499)
T 2dhr_A 102 EMF-V-----------------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 157 (499)
T ss_dssp SSC-T-----------------------THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHH
T ss_pred Hhh-h-----------------------hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHH
Confidence 110 0 011111222222 23578999998421 112333
Q ss_pred hcCCCCC--CCCCEEEEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhhhcCCCCchHHHHHHHHHHHhc
Q 048831 150 AGKRDWF--GLGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKAFKSHQPVEEYVELSKRVLNYA 222 (1051)
Q Consensus 150 ~~~~~~~--~~gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~ 222 (1051)
+..+..+ ..+..|+.||......... .++ ..+.+...+.++-.+++..++-+.....+ .....+++.+
T Consensus 158 L~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfd--r~i~i~~Pd~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t 232 (499)
T 2dhr_A 158 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFD--RQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRT 232 (499)
T ss_dssp HHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSC--CEEECCCCCHHHHHHHHHHTTSSSCCCCS---STTHHHHTTS
T ss_pred HHHhcccccCccEEEEEecCChhhcCcccccccccc--eEEecCCCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHhc
Confidence 3222211 1234555566665443221 122 37899999999999988776532221111 1134567777
Q ss_pred CCCc
Q 048831 223 SGLP 226 (1051)
Q Consensus 223 ~G~P 226 (1051)
.|+.
T Consensus 233 ~G~~ 236 (499)
T 2dhr_A 233 PGFV 236 (499)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7765
No 234
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.13 E-value=0.0046 Score=65.41 Aligned_cols=151 Identities=15% Similarity=0.138 Sum_probs=78.7
Q ss_pred CCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcC
Q 048831 24 VKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKE 92 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 92 (1051)
..++.|.+...++|.+.+.. +-.-.+-++|+|++|+||||||++++...... .+.+. .......
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~- 83 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNM- 83 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhh-
Confidence 45677888777777664321 00112239999999999999999999875432 22222 1111110
Q ss_pred CCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhh-CCCeEEEEEeCCCCHH-------------HHHHHhcCCCCC--
Q 048831 93 GSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRL-RQQKVLLVIDDVADVE-------------QLQSLAGKRDWF-- 156 (1051)
Q Consensus 93 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l-~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~-- 156 (1051)
.. ....+ ....+.+.. ...+.++++|+++... ....+...+..+
T Consensus 84 ~~-~~~~~-------------------~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~ 143 (274)
T 2x8a_A 84 YV-GESER-------------------AVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA 143 (274)
T ss_dssp TT-HHHHH-------------------HHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS
T ss_pred hh-hHHHH-------------------HHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc
Confidence 00 11100 111111111 2356788999986420 011121111111
Q ss_pred CCCCEEEEEeCChhhhHhh-----CCCCcceEEcCCCChhHHHHHHHHhh
Q 048831 157 GLGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 157 ~~gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
....-++.+|....+.... .++. .+.+...+.++-.+++....
T Consensus 144 ~~~~i~ia~tn~p~~LD~al~r~gRfd~--~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 144 RQQVFIMAATNRPDIIDPAILRPGRLDK--TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TTCEEEEEEESCGGGSCHHHHSTTSSCE--EEECCSCCHHHHHHHHHHHT
T ss_pred cCCEEEEeecCChhhCCHhhcCcccCCe--EEEeCCcCHHHHHHHHHHHH
Confidence 1233455677666544322 3344 78899999999999988765
No 235
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.08 E-value=0.0035 Score=73.34 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=35.5
Q ss_pred cccchhHHHHHHHHhcC----CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 27 LVGIESRLEKLRFLMGT----GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 27 ~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
.+|.+.-.+.+.+.+.. ......++.|+|++|+||||||+.++......|
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 67877666666443321 112346899999999999999999998875443
No 236
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.07 E-value=0.00033 Score=73.20 Aligned_cols=62 Identities=23% Similarity=0.250 Sum_probs=29.7
Q ss_pred CceecEEeeeCCCCCC--cCchhhCCCCCCCEEEecCccCcccCccccCCC--CCCEEecCCCCCCC
Q 048831 543 LKCLRTLKLSGCSKLK--KFPAIVASMEDLSELYLDGTYITEVPSSIELLT--GLELLNLNDCKNLV 605 (1051)
Q Consensus 543 l~~L~~L~Ls~c~~~~--~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~~~~l~ 605 (1051)
+++|++|+|++|.... .+|..+..+++|+.|+|++|.+..+ ..+..++ +|+.|+|++|....
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCcc
Confidence 4445555555544332 3334444555555555555555544 1222232 55555555555433
No 237
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.03 E-value=0.00012 Score=76.56 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=26.0
Q ss_pred CCCCCCCEEEecCccCcccC---ccccCCCCCCEEecCCCCC
Q 048831 565 ASMEDLSELYLDGTYITEVP---SSIELLTGLELLNLNDCKN 603 (1051)
Q Consensus 565 ~~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~~~~ 603 (1051)
.++++|+.|+|++|.+..++ ..+..+++|+.|+|++|..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i 208 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc
Confidence 45677777777777776543 4456677777777776653
No 238
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.99 E-value=0.0019 Score=79.32 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=84.7
Q ss_pred CCCccccchhHHHHHHHHhcC-----------CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhc
Q 048831 23 TVKELVGIESRLEKLRFLMGT-----------GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEK 91 (1051)
Q Consensus 23 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 91 (1051)
...+++|.+..+++|.+++.. .-...+.|.|+|++|+||||||++++......| +..+.......
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~----i~v~~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE----EEEEHHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE----EEEEchHhhhh
Confidence 346799999999998887753 123346799999999999999999998764433 22232221111
Q ss_pred CCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH----------------HHHHHHhcCCCC
Q 048831 92 EGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV----------------EQLQSLAGKRDW 155 (1051)
Q Consensus 92 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~ 155 (1051)
.. .... ......++......+.++++|+++.. .++-.+.....
T Consensus 278 ~~--g~~~------------------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~- 336 (806)
T 1ypw_A 278 LA--GESE------------------SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK- 336 (806)
T ss_dssp ST--THHH------------------HHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-
T ss_pred hh--hhHH------------------HHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-
Confidence 00 0000 01111222222345789999998321 11222222221
Q ss_pred CCCCCEEEEEeCChhhhHh-hCC--CCcceEEcCCCChhHHHHHHHHhh
Q 048831 156 FGLGSRILITTRDKQLLVA-HEV--DEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 156 ~~~gs~IiiTTR~~~~~~~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
...+..+|.||........ ... .-...+.+...+.++..+++...+
T Consensus 337 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 1134456666665432211 110 111257888888888888887665
No 239
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.97 E-value=0.00045 Score=65.63 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=24.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
...++|+|+.|+|||||++.++.....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987754
No 240
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.90 E-value=0.0033 Score=77.22 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=82.0
Q ss_pred CccccchhHHHHHHHHhcCCC-------CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHH
Q 048831 25 KELVGIESRLEKLRFLMGTGS-------TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVIS 97 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 97 (1051)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++.....-... ...++.+....... .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~-i~i~~s~~~~~~~~-~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESM-IRIDMSEYMEKHST-S- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCE-EEEEGGGGCSSCCC-C-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcce-EEEechhccccccc-c-
Confidence 458899998888777665311 1223799999999999999999998764332222 23344443322211 0
Q ss_pred HHHHHHHHHhccCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhcCCCC-----------CCCCCEEEE
Q 048831 98 LQKQLLSNLLKLGDISIWHVDDGINIIGSRLRQQKVLLVIDDVADV--EQLQSLAGKRDW-----------FGLGSRILI 164 (1051)
Q Consensus 98 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~-----------~~~gs~Iii 164 (1051)
.......+++ ...-+|+||+++.. +....|...+.. .....+||+
T Consensus 568 -------------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 568 -------------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp ----------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred -------------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 0111112221 12338889999653 222222221111 113468888
Q ss_pred EeCChh-----h--------hH--hhCCCCcceEEcCCCChhHHHHHHHHhh
Q 048831 165 TTRDKQ-----L--------LV--AHEVDEEHILNLDVLNDDEALQLFSMKA 201 (1051)
Q Consensus 165 TTR~~~-----~--------~~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 201 (1051)
||.... + .. ....+. ++.+.+++.++..+++....
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~--~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRIDE--IIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTSSE--EEECC--CHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhCCe--EEecCCCCHHHHHHHHHHHH
Confidence 887311 0 00 012223 89999999999888887654
No 241
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.55 E-value=0.0054 Score=75.47 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=36.9
Q ss_pred CccccchhHHHHHHHHhcCC-------CCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 25 KELVGIESRLEKLRFLMGTG-------STDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..++|.+..++.+...+... ......+.++|++|+|||++|+++++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 34789988888777665421 1123479999999999999999999877
No 242
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.54 E-value=0.0071 Score=65.10 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCCCccccch----hHHHHHHHHhcCCCC-CeeEEEEEcCCcchHHHHHHHHHHHHh-ccccceEEE
Q 048831 22 KTVKELVGIE----SRLEKLRFLMGTGST-DVRMIGIWGMGGLGKTTLARVVYDLIS-HEFYASSFL 82 (1051)
Q Consensus 22 ~~~~~~vGr~----~~~~~l~~~L~~~~~-~~~~v~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~ 82 (1051)
...+.|++.+ ..++.+.+++..... ..+.+.|+|++|+|||+||+++++... .....+.++
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3456677543 233344555553221 246789999999999999999999776 543334444
No 243
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.43 E-value=0.0024 Score=62.61 Aligned_cols=113 Identities=16% Similarity=0.032 Sum_probs=59.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHh----c-cCCC--c-------c
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLL----K-LGDI--S-------I 114 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~----~-~~~~--~-------~ 114 (1051)
..|.|++-.|.||||.|-.++-+...+-..+.++..+... ...+. .. ++..+. . +... . .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE-~~----~l~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGE-RN----LLEPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHH-HH----HHGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccH-HH----HHHhCCcEEEEcccccccCCCCcHHHH
Confidence 4566666667999999999888766654445555422211 11111 12 222221 0 0000 0 0
Q ss_pred ccchhhHHHHHHhhCCCeE-EEEEeCCCC--------HHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 115 WHVDDGINIIGSRLRQQKV-LLVIDDVAD--------VEQLQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 115 ~~~~~~~~~i~~~l~~k~~-LlVlDdv~~--------~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
.........+++.+.+.++ |||||++.. .+++-.+.. .......||||+|...
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~---~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN---ARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH---TSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH---hCcCCCEEEEECCCCc
Confidence 1112334455666665554 999999832 233333322 2245779999999974
No 244
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.35 E-value=0.0085 Score=61.01 Aligned_cols=35 Identities=31% Similarity=0.270 Sum_probs=25.7
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHH
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.|.+++..+-..-.+++|.|.+|+||||+|..++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34444432213346899999999999999999987
No 245
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.95 E-value=0.005 Score=65.32 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
.+++.|+|++|+||||||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 357889999999999999999876
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.71 E-value=0.038 Score=53.65 Aligned_cols=20 Identities=40% Similarity=0.669 Sum_probs=18.9
Q ss_pred eEEEEEcCCcchHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVV 68 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v 68 (1051)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 247
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.59 E-value=0.14 Score=55.93 Aligned_cols=156 Identities=8% Similarity=-0.032 Sum_probs=92.7
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhc-cccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHH
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISH-EFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIG 125 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 125 (1051)
-.++..++|+.|.||++.|+++...+.. .|.....+. ... ...+..+..++...
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~-------------------- 71 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-IDP----NTDWNAIFSLCQAM-------------------- 71 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCT----TCCHHHHHHHHHHH--------------------
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ecC----CCCHHHHHHHhcCc--------------------
Confidence 4578999999999999999999886643 343221111 111 11113222221110
Q ss_pred HhhCCCeEEEEEeCCCC---HHHHHHHhcCCCCCCCCCEEEEEeCC-------hhhhHhhCCCCcceEEcCCCChhHHHH
Q 048831 126 SRLRQQKVLLVIDDVAD---VEQLQSLAGKRDWFGLGSRILITTRD-------KQLLVAHEVDEEHILNLDVLNDDEALQ 195 (1051)
Q Consensus 126 ~~l~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IiiTTR~-------~~~~~~~~~~~~~~~~l~~L~~~ea~~ 195 (1051)
-+-+++-++|+|+++. .+..+.+...+....+++.+|++|.. ..+...... ...+++..+++.++..+
T Consensus 72 -plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~s-r~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 72 -SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN-RSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp -HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTT-TCEEEEECCCCTTHHHH
T ss_pred -CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHh-CceEEEeeCCCHHHHHH
Confidence 1234555778898865 24455555444433467777776643 123333221 22389999999999998
Q ss_pred HHHHhhhcCCCCchHHHHHHHHHHHhcCCCchHHHH
Q 048831 196 LFSMKAFKSHQPVEEYVELSKRVLNYASGLPLALKV 231 (1051)
Q Consensus 196 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 231 (1051)
.+.+.+-..+... ..+.++.+++.++|...++..
T Consensus 150 ~l~~~~~~~g~~i--~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 150 WVAARAKQLNLEL--DDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHTTCEE--CHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHhchHHHHHHH
Confidence 8887764333222 236678899999998877655
No 248
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.54 E-value=0.022 Score=62.38 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=65.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEE-eehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL-ADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR 127 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 127 (1051)
.+++|.|+.|.||||+++.+...+.......++. .+..+. ..... . .+ +. .... ..........+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~~~~~-~----~~---v~-q~~~-~~~~~~~~~~La~a 192 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-VHESK-K----CL---VN-QREV-HRDTLGFSEALRSA 192 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCS-S----SE---EE-EEEB-TTTBSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-hhhcc-c----cc---ee-eeee-ccccCCHHHHHHHH
Confidence 5899999999999999999988765543333332 211110 00000 0 00 00 0000 01112344578888
Q ss_pred hCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhh
Q 048831 128 LRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQLL 172 (1051)
Q Consensus 128 l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~ 172 (1051)
|...+=+|++|++.+.+.++.+.... ..|..||+||.+....
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 88888899999998877766544331 2366789999886644
No 249
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.52 E-value=0.023 Score=61.35 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhcc-C---CCCCCCccccchhHHHHHHHHhcCCC-----------CCeeEEEEEcCCcchHHHHHHHH
Q 048831 4 EFIEEIVNVISSKIH-T---EPKTVKELVGIESRLEKLRFLMGTGS-----------TDVRMIGIWGMGGLGKTTLARVV 68 (1051)
Q Consensus 4 ~~i~~i~~~i~~~l~-~---~~~~~~~~vGr~~~~~~l~~~L~~~~-----------~~~~~v~I~G~gGiGKTtLA~~v 68 (1051)
+.+++|++.|.+++. . ....+.. .-++.-.++|.+++.... ....+++|+|+.|+||||+++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~L 149 (328)
T 3e70_C 71 EVVDALREKIKQKLVGKKVRIGTDKGK-IIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKL 149 (328)
T ss_dssp HHHHHHHHHHHHHHTTCEEECC---CH-HHHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCccCHHH-HHHHHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHH
Confidence 345666666666554 1 1111111 112233445556654321 34579999999999999999999
Q ss_pred HHHHhcc
Q 048831 69 YDLISHE 75 (1051)
Q Consensus 69 ~~~~~~~ 75 (1051)
+..++..
T Consensus 150 ag~l~~~ 156 (328)
T 3e70_C 150 ANWLKNH 156 (328)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9876544
No 250
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.50 E-value=0.069 Score=57.58 Aligned_cols=37 Identities=16% Similarity=0.058 Sum_probs=27.9
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
.-.++.|.|.+|+||||+|..++.....+-..++|+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3468999999999999999998876554434455554
No 251
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.49 E-value=0.037 Score=66.75 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHhcCC-----------CCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 25 KELVGIESRLEKLRFLMGTG-----------STDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
....|.+...++|.+.+... ....+-|.++|++|.|||.+|++++.....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 45678888777877665421 123456889999999999999999987654
No 252
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.44 E-value=0.027 Score=56.90 Aligned_cols=112 Identities=14% Similarity=-0.026 Sum_probs=59.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhcc-CCCccccchhhHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKL-GDISIWHVDDGINIIGS 126 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~~~~~i~~ 126 (1051)
-.++.|+|..|+||||+|..++.+...+-..+.++...... . +. .++++.++.. .........+....+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~~-----~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-SI-----RNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-GC-----SSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-HH-----HHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 36899999999999999999998876654444444211111 0 10 0112222100 01111222334444444
Q ss_pred hhCCC-eEEEEEeCCCC--HHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 127 RLRQQ-KVLLVIDDVAD--VEQLQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 127 ~l~~k-~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
.+.+. .-+||+|.+.. .++++.+.... ..|-.||+|-++.+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~---~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILA---ENGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHH---HTTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHH---hCCCeEEEEecccc
Confidence 44444 44999999853 23444332211 12678999998644
No 253
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.44 E-value=0.037 Score=68.79 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=37.8
Q ss_pred ccccchhHHHHHHHHhcCC-------CCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 26 ELVGIESRLEKLRFLMGTG-------STDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.++|.+..++.+...+... ......+.|+|++|+|||++|+++++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4789999888887766431 112358999999999999999999987643
No 254
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.37 E-value=0.0092 Score=65.28 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=39.3
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 24 VKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
...++|++..++.+...+..+ .-+.|+|++|+|||++|+++++.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 356899999998887777543 358899999999999999999876544
No 255
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.35 E-value=0.014 Score=64.63 Aligned_cols=48 Identities=25% Similarity=0.214 Sum_probs=37.4
Q ss_pred ccccchhHHHHHHHHhc-------------CCCCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 26 ELVGIESRLEKLRFLMG-------------TGSTDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~-------------~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.++|.+..++.+...+. ......+.|.|+|++|+|||++|+++++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 37899998888877772 1112346789999999999999999998764
No 256
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.31 E-value=0.037 Score=59.62 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhcc-CCCCCCCccccchhHHHHHHHHhcCCC------------CCeeEEEEEcCCcchHHHHHHHHHH
Q 048831 4 EFIEEIVNVISSKIH-TEPKTVKELVGIESRLEKLRFLMGTGS------------TDVRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 4 ~~i~~i~~~i~~~l~-~~~~~~~~~vGr~~~~~~l~~~L~~~~------------~~~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
+.++++++.|.+++. ...... =++.-.++|.+++.... ...++|+|+|.+|+||||++..++.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 52 KMVLKVSNLVRKKTKRDTSFEN----IKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp HHHHHHHHHHHHHCCTTCCHHH----HHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchhHHH----HHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455666666665554 111111 12233345556664321 3467999999999999999999998
Q ss_pred HHhccccceEEEe
Q 048831 71 LISHEFYASSFLA 83 (1051)
Q Consensus 71 ~~~~~f~~~~~~~ 83 (1051)
.++.. ...+.+.
T Consensus 128 ~l~~~-g~kVlli 139 (320)
T 1zu4_A 128 YYAEL-GYKVLIA 139 (320)
T ss_dssp HHHHT-TCCEEEE
T ss_pred HHHHC-CCeEEEE
Confidence 77654 3344443
No 257
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.28 E-value=0.041 Score=59.89 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCC-CCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 34 LEKLRFLMGTGS-TDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 34 ~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
...|...|..+. ..-+++.|.|++|+||||||.+++......-..++|+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 456667775222 33479999999999999999999987654433455554
No 258
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.27 E-value=0.021 Score=58.56 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.+..++..+-..-.+++|.|+.|+|||||++.++....
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34444432223347999999999999999999987543
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.27 E-value=0.025 Score=56.63 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=34.0
Q ss_pred chhHHHHHHHHhcCC-CCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 30 IESRLEKLRFLMGTG-STDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 30 r~~~~~~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
|++.++++.+.+... .....+|+|.|..|.||||+++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 556667776665532 244579999999999999999999886643
No 260
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.15 E-value=0.067 Score=60.14 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhcc--CCCCC-CCccccchhHHHHHHHHhcCCC-------CCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 4 EFIEEIVNVISSKIH--TEPKT-VKELVGIESRLEKLRFLMGTGS-------TDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 4 ~~i~~i~~~i~~~l~--~~~~~-~~~~vGr~~~~~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
++++++++.|..+.. ..... ...-.-++.-.+++.+++.... ...++|.++|.+|+||||+|..++..+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 46 PVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp HHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456667777765554 11111 1111112334456777775421 3468999999999999999999998776
Q ss_pred cc
Q 048831 74 HE 75 (1051)
Q Consensus 74 ~~ 75 (1051)
.+
T Consensus 126 ~~ 127 (433)
T 2xxa_A 126 EK 127 (433)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 261
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.14 E-value=0.01 Score=58.09 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=23.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.+|.|.|++|+||||+|+++.+++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 57999999999999999999987643
No 262
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.13 E-value=0.048 Score=54.57 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=46.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhh----hcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERF----EKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIG 125 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~----~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 125 (1051)
+|.|.|++|+||||.|+.+++++. . ..+. ..... .... .+-.++-..+..+. . ...+-....+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g----~-~~is-tGdllR~~i~~~t---~lg~~~~~~~~~G~-l--vpd~iv~~lv~ 69 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG----F-VHIS-TGDILREAVQKGT---PLGKKAKEYMERGE-L--VPDDLIIALIE 69 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC----C-EEEE-HHHHHHHHHHHTC---HHHHHHHHHHHHTC-C--CCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC----C-eEEc-HHHHHHHHHHhcC---hhhhhHHHHHhcCC-c--CCHHHHHHHHH
Confidence 578999999999999999998652 1 2222 22211 1110 11112222222111 1 11233456677
Q ss_pred HhhCCCeEEEEEeCC-CCHHHHHHH
Q 048831 126 SRLRQQKVLLVIDDV-ADVEQLQSL 149 (1051)
Q Consensus 126 ~~l~~k~~LlVlDdv-~~~~~~~~l 149 (1051)
+++....- +|||+. .+..|.+.|
T Consensus 70 ~~l~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 70 EVFPKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp HHCCSSSC-EEEESCCCSHHHHHHH
T ss_pred HhhccCCc-eEecCCchhHHHHHHH
Confidence 77766443 688998 555665544
No 263
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.10 E-value=0.048 Score=61.14 Aligned_cols=37 Identities=35% Similarity=0.495 Sum_probs=27.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeeh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADV 85 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~ 85 (1051)
+.++|+|.+|+||||||..+......++...+.+..+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~i 188 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGV 188 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeee
Confidence 4689999999999999999998766555444433334
No 264
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.07 E-value=0.028 Score=58.68 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=61.2
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR 127 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 127 (1051)
-.+++|+|+.|.||||+++.+...+...+...+++....-.+-.... .. + +. ...... +.......+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~-~~----~---v~-q~~~gl-~~~~l~~~la~a 94 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK-KS----I---VN-QREVGE-DTKSFADALRAA 94 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-SS----E---EE-EEEBTT-TBSCHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCc-ce----e---ee-HHHhCC-CHHHHHHHHHHH
Confidence 36899999999999999999998665443445544321100000000 00 0 00 000000 112234456666
Q ss_pred hCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 048831 128 LRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQL 171 (1051)
Q Consensus 128 l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~ 171 (1051)
+...+=++++|+..+.+....+.... ..|..|++||.+..+
T Consensus 95 L~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 66566688899997665544433321 246678888887653
No 265
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.04 E-value=0.045 Score=55.07 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
...++|.|.|++|.||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999865
No 266
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.00 E-value=0.023 Score=57.31 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 34 LEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 34 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+++|.+.+........+|+|.|+.|.|||||++.+...+..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34454444432344579999999999999999999987653
No 267
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.00 E-value=0.025 Score=61.21 Aligned_cols=39 Identities=18% Similarity=0.018 Sum_probs=28.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccc-eEEEeehhh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYA-SSFLADVRE 87 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~ 87 (1051)
+.++|+|.+|+|||||++.+...+...... .+.+..+.+
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGE 214 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 214 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESS
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecC
Confidence 679999999999999999998866543333 233444443
No 268
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.98 E-value=0.094 Score=55.77 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.6
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..++++|+|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987763
No 269
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.82 E-value=0.067 Score=57.74 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 34 LEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 34 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
+..|.+++. +-..-.++.|.|.+|+||||+|..++..+..+-..+.|+.
T Consensus 33 ~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 33 FVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 344545553 2223368999999999999999999876654333344443
No 270
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.81 E-value=0.1 Score=59.34 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=27.4
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccc-cceEEEe
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEF-YASSFLA 83 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~ 83 (1051)
.-.++.|.|.+|+||||+|..++..+.... ..++|+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 346899999999999999999988765432 2344443
No 271
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.78 E-value=0.049 Score=57.98 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhcc--CCCCCCCc-cccchhHHHHHHHHhcCCCCC-------eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 4 EFIEEIVNVISSKIH--TEPKTVKE-LVGIESRLEKLRFLMGTGSTD-------VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 4 ~~i~~i~~~i~~~l~--~~~~~~~~-~vGr~~~~~~l~~~L~~~~~~-------~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+.++++++.+.++.. ..++.... -.=+....+.+...+...... .+++++.|.+|+||||++..++..+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 44 KLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455666666665543 22111110 001233345566666432212 57999999999999999999998776
Q ss_pred cc
Q 048831 74 HE 75 (1051)
Q Consensus 74 ~~ 75 (1051)
..
T Consensus 124 ~~ 125 (297)
T 1j8m_F 124 KK 125 (297)
T ss_dssp HT
T ss_pred HC
Confidence 54
No 272
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.78 E-value=0.055 Score=57.75 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhcc-CCCCCCCccccchhHHHHHHHHhcCCC---------CCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 4 EFIEEIVNVISSKIH-TEPKTVKELVGIESRLEKLRFLMGTGS---------TDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 4 ~~i~~i~~~i~~~l~-~~~~~~~~~vGr~~~~~~l~~~L~~~~---------~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
++++++++.+.+++. ........ -++.-.++|.+.+.... ....+++|+|+.|+||||+++.++..++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 48 KITVRIVERLREDIMSGKLKSGSE--IKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSHHH--HHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHH--HHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 455666666655544 11111111 11223345555554321 2357999999999999999999998765
Q ss_pred ccccceEEE
Q 048831 74 HEFYASSFL 82 (1051)
Q Consensus 74 ~~f~~~~~~ 82 (1051)
.. ...+.+
T Consensus 126 ~~-~g~V~l 133 (302)
T 3b9q_A 126 NE-GTKVLM 133 (302)
T ss_dssp HT-TCCEEE
T ss_pred Hc-CCeEEE
Confidence 43 233444
No 273
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.77 E-value=0.017 Score=56.14 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=22.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.+|+|.|+.|+||||+|+.+..++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998764
No 274
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.68 E-value=0.037 Score=58.74 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=25.7
Q ss_pred CCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 45 STDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 45 ~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.+...+|+|.|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 355689999999999999999999886654
No 275
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.66 E-value=0.051 Score=57.31 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=25.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhccc--cceEEEe
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHEF--YASSFLA 83 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~ 83 (1051)
++.|+|++|+||||||.+++.....++ ..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 689999999999999988887665442 3345544
No 276
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.60 E-value=0.023 Score=58.82 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=27.0
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.|..+|..+-..-.+++|.|++|+||||||+.++...
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4445553221234689999999999999999998753
No 277
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.59 E-value=0.059 Score=57.54 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=27.8
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
...+++|+|++|+||||+++.++..++.. ...+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35799999999999999999999876654 3344443
No 278
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.55 E-value=0.013 Score=57.37 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=24.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcccc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFY 77 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 77 (1051)
|.|+|.|++|+|||||++++..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 56889999999999999999887655443
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.54 E-value=0.021 Score=57.01 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=23.3
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.++|+|.|+.|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998763
No 280
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.54 E-value=0.02 Score=56.33 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.+.|.|.|+.|+||||+|+.++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 281
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.44 E-value=0.074 Score=57.99 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcc-CCCCCCCccccchhHHHHHHHHhcCCC---------CCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 4 EFIEEIVNVISSKIH-TEPKTVKELVGIESRLEKLRFLMGTGS---------TDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 4 ~~i~~i~~~i~~~l~-~~~~~~~~~vGr~~~~~~l~~~L~~~~---------~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+++++|++.|.++.. ....+... -+..-.++|.+.+.... ....+++|+|+.|+||||+++.++..++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 105 KITVRIVERLREDIMSGKLKSGSE--IKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSHHH--HHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHH--HHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 455666666655544 11111111 11223345555664321 2357999999999999999999998766
Q ss_pred ccccceEEE
Q 048831 74 HEFYASSFL 82 (1051)
Q Consensus 74 ~~f~~~~~~ 82 (1051)
.. ...+.+
T Consensus 183 ~~-~G~V~l 190 (359)
T 2og2_A 183 NE-GTKVLM 190 (359)
T ss_dssp HT-TCCEEE
T ss_pred cc-CCEEEE
Confidence 43 333444
No 282
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.36 E-value=0.03 Score=62.29 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=35.9
Q ss_pred ccccchhHHHHHHHHhc----C------------------------CCCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 26 ELVGIESRLEKLRFLMG----T------------------------GSTDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 26 ~~vGr~~~~~~l~~~L~----~------------------------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.++|.+...+.|...+. . .......+.|+|++|+|||++|+++++...
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 47898888887776651 0 011235688999999999999999998774
No 283
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.34 E-value=0.031 Score=60.18 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=34.5
Q ss_pred ccchhHHHHHHHHhcC--CCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 28 VGIESRLEKLRFLMGT--GSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 28 vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
|+.+.-.+++.+.+.. ..+....|+|+|+.|.||||+|+.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3445555555555532 234456799999999999999999998766544
No 284
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.30 E-value=0.033 Score=63.80 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=37.2
Q ss_pred CccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 25 KELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..++|++..++.+...+..+ .-|.|+|++|+|||+||+++++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 35899999998887776543 4688999999999999999998663
No 285
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.27 E-value=0.063 Score=58.89 Aligned_cols=51 Identities=25% Similarity=0.282 Sum_probs=35.0
Q ss_pred HHHHHHHHhc-CCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 33 RLEKLRFLMG-TGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 33 ~~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
-+..|..+|. .+-..-+++.|+|.+|+||||||..++......-..++|+.
T Consensus 58 G~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3456666675 22133468999999999999999998876654434455654
No 286
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.26 E-value=0.024 Score=62.36 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=37.6
Q ss_pred CCCCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 19 TEPKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 19 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.++.....++|.+...+.+....... ...-|.|+|++|+|||++|+++++...
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 44455678999988665544333221 123489999999999999999998664
No 287
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.26 E-value=0.074 Score=59.43 Aligned_cols=41 Identities=27% Similarity=0.279 Sum_probs=30.8
Q ss_pred HHHHHHhcCCC-------CCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 35 EKLRFLMGTGS-------TDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 35 ~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
++|.++|.... ...++|+++|.+|+||||++..++..++.+
T Consensus 77 ~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 77 DELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp HHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44555665321 236899999999999999999999877654
No 288
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.25 E-value=0.074 Score=56.75 Aligned_cols=45 Identities=24% Similarity=0.240 Sum_probs=33.5
Q ss_pred hhHHHHHHHHhcCC------CCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 31 ESRLEKLRFLMGTG------STDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 31 ~~~~~~l~~~L~~~------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
+.-.++|.+.+... .....+++|+|.+|+||||++..++..++..
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 34455666766542 1345799999999999999999999877654
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.14 E-value=0.045 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..+|+|.|+.|.||||+|+.++..+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999998775
No 290
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.12 E-value=0.044 Score=53.86 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=30.7
Q ss_pred hHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 32 SRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 32 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.-+..+..++.. -+..+.+.|+|++|+||||+|.++++.+..
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 335556666653 223457999999999999999999987653
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.10 E-value=0.042 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=23.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.+|+|.|+.|+||||+|+.+.+++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 292
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.07 E-value=0.031 Score=54.04 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.++|+|.|+.|+||||+|+.+++++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999999999998764
No 293
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.07 E-value=0.091 Score=57.97 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=61.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR 127 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 127 (1051)
..+++|+|+.|.||||+++.+...+.......+.+..-......... + ..+. +.... .+.......+...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~-------~-~~v~-Q~~~g-~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK-------K-SIVN-QREVG-EDTKSFADALRAA 205 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCS-------S-SEEE-EEEBT-TTBSCSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccC-------c-eEEE-eeecC-CCHHHHHHHHHHH
Confidence 46899999999999999999998765443344433211000000000 0 0000 00000 0122335567777
Q ss_pred hCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 128 LRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 128 l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
+...+=+|++|.+.+.+.+....... ..|..|+.|+....
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 77777789999998766655433321 34666777777654
No 294
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.05 E-value=0.11 Score=58.09 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=25.5
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
...+|.++|.+|+||||++.+++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999877664
No 295
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.04 E-value=0.024 Score=55.62 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=22.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
++++|.|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999988654
No 296
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.96 E-value=0.067 Score=58.42 Aligned_cols=51 Identities=25% Similarity=0.239 Sum_probs=35.1
Q ss_pred HHHHHHHHhc-CCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 33 RLEKLRFLMG-TGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 33 ~~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
-...|..+|. .+-..-+++.|+|.+|+||||||.+++......-..++|+.
T Consensus 45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3445666665 22233478999999999999999999876654433455554
No 297
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.91 E-value=0.051 Score=52.12 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=24.9
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..++++|.|..|+|||||+.++...++.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999887654
No 298
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.90 E-value=0.16 Score=58.00 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=27.1
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcccc-ceEEEe
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFY-ASSFLA 83 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~ 83 (1051)
-.++.|.|.+|+||||+|..++..+..... .+.|+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 468999999999999999999887654322 344443
No 299
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.86 E-value=0.027 Score=55.15 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.+.|.|.|++|+||||+|+.+++++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999876
No 300
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.85 E-value=0.026 Score=54.82 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.+|+|.|+.|.||||+|+.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998654
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.80 E-value=0.04 Score=54.55 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..+|.|.|++|+||||+|+.+..++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.75 E-value=0.035 Score=54.30 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.+|.|.|++|+||||+|+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 303
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.72 E-value=0.057 Score=53.16 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=24.6
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
...+|+|.|+.|.||||+|+.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3478999999999999999999987764
No 304
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.69 E-value=0.031 Score=54.45 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.|.|.|++|.||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 305
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.68 E-value=0.039 Score=57.44 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=22.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
++|+|.|++|+||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998754
No 306
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.63 E-value=0.038 Score=54.63 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=23.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.+|+|.|++|+||||+|+.+.+++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987754
No 307
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.58 E-value=0.13 Score=58.15 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhcc-CCCCCCCccccchhHHHHHHHHhcCC-------CCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 4 EFIEEIVNVISSKIH-TEPKTVKELVGIESRLEKLRFLMGTG-------STDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 4 ~~i~~i~~~i~~~l~-~~~~~~~~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
+.+++|++.|..+.. ........+ +..-.+.|.++|... -....+++|+|..|+|||||++.++..++..
T Consensus 243 ~~~~~l~~~l~~~~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 243 ETTRKIITNLTEGASRKQLRDAEAL--YGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp HHHHHHHHHHHHHHHHHTCCBGGGH--HHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 345566666655444 111111111 222334555555431 1345799999999999999999999876643
Q ss_pred ccceEEEe
Q 048831 76 FYASSFLA 83 (1051)
Q Consensus 76 f~~~~~~~ 83 (1051)
.+.+++.
T Consensus 321 -~G~V~l~ 327 (503)
T 2yhs_A 321 -GKSVMLA 327 (503)
T ss_dssp -TCCEEEE
T ss_pred -CCeEEEe
Confidence 3444443
No 308
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.57 E-value=0.032 Score=55.83 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..+|+|.|+.|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 309
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.56 E-value=0.032 Score=55.03 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=24.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcccc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFY 77 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 77 (1051)
++++|.|+.|+|||||++.+.......|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 57999999999999999999987654443
No 310
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.55 E-value=0.053 Score=56.06 Aligned_cols=26 Identities=19% Similarity=0.000 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
....|+|.|+.|+||||+|+.+.+++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 311
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.53 E-value=0.13 Score=56.11 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.|..+|..+-..-.++.|+|.+|+||||+|..++...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445554222345799999999999999999988764
No 312
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.50 E-value=0.035 Score=55.91 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.++|+|.|+.|+|||||++.+...+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 468999999999999999999987653
No 313
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.45 E-value=0.039 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
..+++|.|+.|.||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999875
No 314
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.43 E-value=0.041 Score=55.03 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.|+|.|+.|+||||+|+.+++++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999987653
No 315
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.41 E-value=0.05 Score=53.51 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=19.0
Q ss_pred hhCCCCCCCEEEecCccCc-----ccCccccCCCCCCEEecCCCC
Q 048831 563 IVASMEDLSELYLDGTYIT-----EVPSSIELLTGLELLNLNDCK 602 (1051)
Q Consensus 563 ~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~ 602 (1051)
.+..-..|+.|+|++|.|. .+...+..-+.|+.|+|++|.
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3444445555555555554 122333334455555555544
No 316
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.38 E-value=0.037 Score=54.64 Aligned_cols=28 Identities=11% Similarity=0.328 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..++|+|.|+.|+|||||++++......
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCc
Confidence 3478999999999999999999986543
No 317
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.36 E-value=0.078 Score=59.34 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=37.3
Q ss_pred CccccchhHHHHHHHHhcC---------C---CCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 25 KELVGIESRLEKLRFLMGT---------G---STDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 25 ~~~vGr~~~~~~l~~~L~~---------~---~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
.+++|.+...+.+...+.. . ....+-|.++|++|+||||+|++++..+...|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 3578988877777555421 0 11245689999999999999999998775443
No 318
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.25 E-value=0.064 Score=52.13 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.5
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..+|+|.|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 319
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.24 E-value=0.048 Score=54.13 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..+|+|.|+.|+||||+|+.+++++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998865
No 320
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.24 E-value=0.05 Score=54.32 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=22.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..+|+|.|+.|.||||+|+.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998876
No 321
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.24 E-value=0.04 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.+|+|.|++|+||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998754
No 322
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.23 E-value=0.052 Score=53.37 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=22.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
...|+|.|+.|+||||+|+.+.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999886
No 323
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.20 E-value=0.053 Score=64.38 Aligned_cols=52 Identities=23% Similarity=0.399 Sum_probs=42.0
Q ss_pred CCCCCccccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 21 PKTVKELVGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 21 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
|.....++|.+.-++.+...+..+ ..+.|+|++|+||||||+.++..+....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ccccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 344467999998888888877654 4799999999999999999998665443
No 324
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.14 E-value=0.071 Score=53.77 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.6
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999887654
No 325
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.13 E-value=0.075 Score=57.60 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.|..+|..+-..-.++.|+|.+|+||||+|..++....
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 34444432212346899999999999999999987653
No 326
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.09 E-value=0.083 Score=57.25 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=58.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccc--cchhhHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIW--HVDDGINIIGS 126 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~--~~~~~~~~i~~ 126 (1051)
.+++|.|+.|.|||||++.+...+.. ....+.+....+.. .... ....... .-......+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~-~~~~--------------~~~i~~~~ggg~~~r~~la~ 235 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIV-FKHH--------------KNYTQLFFGGNITSADCLKS 235 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCC-CSSC--------------SSEEEEECBTTBCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccc-cccc--------------hhEEEEEeCCChhHHHHHHH
Confidence 57999999999999999999876544 24455554322110 0000 0000000 11233455667
Q ss_pred hhCCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 127 RLRQQKVLLVIDDVADVEQLQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 127 ~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
.+..++=++++|++...+.++.+... . ..+..+|+||....
T Consensus 236 aL~~~p~ilildE~~~~e~~~~l~~~-~--~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 236 CLRMRPDRIILGELRSSEAYDFYNVL-C--SGHKGTLTTLHAGS 276 (330)
T ss_dssp HTTSCCSEEEECCCCSTHHHHHHHHH-H--TTCCCEEEEEECSS
T ss_pred HhhhCCCEEEEcCCChHHHHHHHHHH-h--cCCCEEEEEEcccH
Confidence 77777888999999775555444322 1 11223666666544
No 327
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.08 E-value=0.045 Score=53.10 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
++|+|.|+.|+||||+|+.+.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998763
No 328
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.06 E-value=0.057 Score=53.49 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=22.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..+|+|.|+.|+||||+|+.+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 329
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.05 E-value=0.085 Score=56.59 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=24.8
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
++.++|+|+|-|||||||.|.-++.-+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 457999999999999999998887766554
No 330
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.02 E-value=0.15 Score=56.06 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 35 EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 35 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
.++.+.+....+...+|+|+|.+|+|||||+.++...+...
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34444444334567899999999999999999998766543
No 331
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.02 E-value=0.058 Score=53.92 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
....+|+|.|+.|+||||+|+.+++++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998764
No 332
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.01 E-value=0.044 Score=54.95 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..++|+|.|++|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999988764
No 333
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.00 E-value=0.081 Score=56.10 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
...+|.|.|++|+||||+|+++..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 334
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.99 E-value=0.091 Score=56.28 Aligned_cols=46 Identities=28% Similarity=0.349 Sum_probs=32.2
Q ss_pred ccchhHHHHHHHHhcCC--CCCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 28 VGIESRLEKLRFLMGTG--STDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 28 vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+|-...+..+...+... .....+|+|.|+.|.||||+|+.+...+.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44444555444333332 34567999999999999999999987665
No 335
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.96 E-value=0.061 Score=51.83 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 336
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.95 E-value=0.057 Score=56.20 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
....+|+|.|+.|.||||+|+.+...+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34578999999999999999999886543
No 337
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.95 E-value=0.3 Score=54.53 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=27.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRE 87 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~ 87 (1051)
+.++|.|.+|+|||+|+..+.+.+.......+.+..+.+
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGE 192 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 192 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESC
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCC
Confidence 579999999999999999999876443323333344444
No 338
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.94 E-value=0.086 Score=53.03 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
.+|+|.|+.|+||||+|+.+.+++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 6899999999999999999999876543
No 339
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.89 E-value=0.039 Score=54.32 Aligned_cols=85 Identities=13% Similarity=0.179 Sum_probs=51.3
Q ss_pred cccCceecEEeeeCCCCCCc----CchhhCCCCCCCEEEecCccCcc-----cCccccCCCCCCEEecCCCCC--CC---
Q 048831 540 ISSLKCLRTLKLSGCSKLKK----FPAIVASMEDLSELYLDGTYITE-----VPSSIELLTGLELLNLNDCKN--LV--- 605 (1051)
Q Consensus 540 l~~l~~L~~L~Ls~c~~~~~----~p~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~--l~--- 605 (1051)
+..-.+|+.|+|++|..... +.+.+..-+.|++|+|++|.|.. +-..+..-+.|+.|+|++|.. ++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 33456788888888765432 44455556789999999988872 444555566788888876532 11
Q ss_pred --cccccccCCCCCCEEeccC
Q 048831 606 --RLPNSINGLKSLKTLNLSG 624 (1051)
Q Consensus 606 --~lp~~i~~L~~L~~L~L~~ 624 (1051)
.+...+..-+.|+.|+++.
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHhCCCcCeEeccC
Confidence 1222333445566665543
No 340
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.88 E-value=0.04 Score=54.04 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=18.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..+|.|.|+.|+||||+|+.+.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999987654
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.87 E-value=0.056 Score=53.79 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.+|+|.|+.|+||||+|+.+.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 342
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.86 E-value=0.063 Score=52.76 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=22.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..|+|.|+.|+||||+|+.+++++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998865
No 343
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.74 E-value=0.076 Score=52.98 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=23.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..+|+|.|+.|+||||+|+.+..++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 344
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.73 E-value=0.24 Score=55.52 Aligned_cols=38 Identities=34% Similarity=0.399 Sum_probs=28.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcc-ccceEEEeehhh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHE-FYASSFLADVRE 87 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~ 87 (1051)
+.++|.|.+|+|||+|+..+.+.+... -+.++|. .+.+
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGE 204 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGE 204 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESC
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-Eccc
Confidence 568999999999999999999876543 3444443 4444
No 345
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.71 E-value=0.063 Score=52.98 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.+++|.|+.|.||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 346
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.62 E-value=0.066 Score=54.33 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
...|+|.|+.|+||||+|+.+++++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998763
No 347
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.58 E-value=0.073 Score=51.87 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998664
No 348
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.57 E-value=0.07 Score=52.71 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=23.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..+|+|.|+.|+||||+|+.+.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 349
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.54 E-value=0.058 Score=58.26 Aligned_cols=39 Identities=18% Similarity=0.081 Sum_probs=28.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccc-eEEEeehhh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYA-SSFLADVRE 87 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~ 87 (1051)
+.++|.|.+|+|||+|+..+++.+...... .+++..+.+
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGE 215 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDE 215 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEecc
Confidence 568999999999999999999876543332 334444443
No 350
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.54 E-value=0.068 Score=54.53 Aligned_cols=24 Identities=33% Similarity=0.482 Sum_probs=21.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.+|+|.|+.|.||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 351
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.49 E-value=0.17 Score=57.90 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=29.9
Q ss_pred HHHHHHhcCCC-------CCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 35 EKLRFLMGTGS-------TDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 35 ~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
++|.+++.... ...++|+|+|.+|+||||++.+++..++.+
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 44556665421 346799999999999999999999876654
No 352
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.46 E-value=0.12 Score=57.95 Aligned_cols=41 Identities=32% Similarity=0.395 Sum_probs=30.6
Q ss_pred HHHHHHhcCC------C-CCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 35 EKLRFLMGTG------S-TDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 35 ~~l~~~L~~~------~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
++|.+++... . +..++|+|+|.+|+||||+|.+++..++.+
T Consensus 79 ~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 79 EELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp HHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4566666532 1 235699999999999999999999876644
No 353
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.46 E-value=0.077 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=23.2
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999998754
No 354
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.46 E-value=0.11 Score=52.69 Aligned_cols=45 Identities=27% Similarity=0.239 Sum_probs=32.7
Q ss_pred cchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 29 GIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 29 Gr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
+.+...+.+.+.+.. ...++|+|.|.+|+|||||+.++.......
T Consensus 13 ~~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334455555555533 346899999999999999999998876544
No 355
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.46 E-value=0.072 Score=53.14 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
+...+|+|.|+.|.||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999875
No 356
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.43 E-value=0.17 Score=51.33 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 33 RLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 33 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..+.+...+.. .....|+|.|.+|+|||||+..+.......
T Consensus 25 ~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 25 LADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34455555532 346789999999999999999998765444
No 357
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.42 E-value=0.08 Score=53.26 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
...+|+|.|+.|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 358
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.39 E-value=0.073 Score=53.24 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.+++|.|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 359
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.38 E-value=0.099 Score=52.57 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=24.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 360
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.36 E-value=0.075 Score=52.56 Aligned_cols=25 Identities=36% Similarity=0.676 Sum_probs=22.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+|+|.|+.|+||||+|+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987743
No 361
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.36 E-value=0.065 Score=53.60 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 362
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.30 E-value=0.076 Score=53.17 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=22.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.+|+|.|+.|.||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 689999999999999999998865
No 363
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.24 E-value=0.079 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.-.+|+|+|+.|.||||+|+.+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998763
No 364
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.18 E-value=0.082 Score=54.73 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.2
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..+|+|.|+.|.||||+++.+++++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997653
No 365
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.15 E-value=0.37 Score=47.86 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=53.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCC-ccccchhhHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDI-SIWHVDDGINIIGS 126 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~~~~~~~~~~i~~ 126 (1051)
-.+..++|..|.||||.|...+.+...+-..+.++..... ...+. ..+.+.+...... ...+.. .+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~ge-----~~i~s~~g~~~~a~~~~~~~----~~~~ 96 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYSE-----EDVVSHNGLKVKAVPVSASK----DIFK 96 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSGG----GGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--CcchH-----HHHHhhcCCeeEEeecCCHH----HHHH
Confidence 4788999999999999998888876655444444432111 11111 1233332211110 111111 2222
Q ss_pred hhCCCeEEEEEeCCCC--HHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 048831 127 RLRQQKVLLVIDDVAD--VEQLQSLAGKRDWFGLGSRILITTRDKQ 170 (1051)
Q Consensus 127 ~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 170 (1051)
...++--+|++|.+.- .++++.+.... ..|-.||+|-++.+
T Consensus 97 ~~~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 97 HITEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQD 139 (214)
T ss_dssp GCCSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBC
T ss_pred HHhcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEecccc
Confidence 2333334999998732 23443332211 13678999999754
No 366
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.07 E-value=0.07 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.+|+|.|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 367
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.06 E-value=0.089 Score=52.77 Aligned_cols=27 Identities=37% Similarity=0.509 Sum_probs=23.0
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
....+|+|.|+.|.||||+|+.+...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999988643
No 368
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.04 E-value=0.067 Score=53.97 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
++|+|.|+.|+||||+|+.+...+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999987754
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.04 E-value=0.099 Score=51.01 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.6
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..+|+|.|+.|.||||+|+.+...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 368999999999999999999987643
No 370
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.04 E-value=0.13 Score=53.36 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=24.2
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
....+|.|.|++|.||||+|+.+...+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457899999999999999999988754
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.01 E-value=0.073 Score=54.10 Aligned_cols=26 Identities=19% Similarity=0.108 Sum_probs=23.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
...|.|.|+.|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 372
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.00 E-value=0.47 Score=55.53 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
+++.|.|.+|+||||++.++...+...-
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 6899999999999999999988765543
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.92 E-value=0.092 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.451 Sum_probs=22.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987754
No 374
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.90 E-value=0.076 Score=54.21 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
...|+|.|+.|+||||+|+.+++++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999998865
No 375
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.88 E-value=0.078 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
++++|+|+.|.|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999987654
No 376
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.87 E-value=0.071 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.2
Q ss_pred eeEEEEEcCCcchHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVY 69 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~ 69 (1051)
..+++|.|+.|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3689999999999999999643
No 377
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.84 E-value=0.086 Score=52.81 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=20.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.76 E-value=0.097 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.|+|.|+.|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 379
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.68 E-value=0.17 Score=52.21 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=26.3
Q ss_pred HHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 37 LRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 37 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
+..++....+....|.|+|++|+|||.+|.++++.+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 334444322334579999999999999999999853
No 380
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.67 E-value=0.092 Score=54.56 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.1
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..+|+|.|+.|.||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999998653
No 381
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.62 E-value=0.14 Score=52.33 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=25.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
.+++|.|++|+|||||++.++......-..+.|+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 6899999999999999999997654332233443
No 382
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.61 E-value=0.099 Score=56.19 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=22.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.+|+|.|+.|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 383
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.61 E-value=0.31 Score=54.26 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=25.2
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..++++|+|.+|+||||++..++..++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999877654
No 384
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.60 E-value=0.12 Score=51.99 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=23.5
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..+|+|.|+.|.||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998765
No 385
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.50 E-value=0.15 Score=52.62 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=26.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
-.++.|.|.+|+||||+|.+++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 368999999999999999888765544333445543
No 386
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.44 E-value=0.18 Score=48.68 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.++++|.|..|+|||||++++...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987654
No 387
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.44 E-value=0.12 Score=53.34 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
...+|+|.|+.|.||||||+.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 388
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.42 E-value=0.097 Score=52.25 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=22.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.+|+|.|+.|+||||+|+.+.+++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 389
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.35 E-value=0.18 Score=54.57 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 35 EKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 35 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..|..+|..+-..-.++.|+|.+|+||||+|..++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555553221334799999999999999999988753
No 390
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.35 E-value=0.1 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.331 Sum_probs=20.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.|+|.|+.|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 391
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.33 E-value=0.13 Score=55.23 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=25.0
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
....+|+|.|+.|.|||||++.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 44579999999999999999999986653
No 392
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.30 E-value=0.12 Score=52.58 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=23.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
..+|+|.|++|.||||+|+.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 393
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.29 E-value=0.096 Score=50.53 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
++++|+|..|.|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999999866543
No 394
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.22 E-value=0.6 Score=46.14 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=26.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhccccceEE
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLISHEFYASSF 81 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 81 (1051)
.|+|-|.-|+||||.++.+++.+..+...+++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 47899999999999999999988776444444
No 395
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.17 E-value=0.13 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+|+|.|+.|.||||+|+.++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988764
No 396
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.16 E-value=0.22 Score=56.26 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=27.2
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
.-.++.|.|.+|+||||+|..++.....+-..++|+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 346899999999999999999988765542334444
No 397
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.16 E-value=0.09 Score=56.30 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.++|+|.|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999998765
No 398
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.06 E-value=0.11 Score=55.53 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
++|+|.|+.|+||||||+.++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 399
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.06 E-value=0.19 Score=55.28 Aligned_cols=27 Identities=33% Similarity=0.255 Sum_probs=23.4
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
...++++|+|+.|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345799999999999999999999754
No 400
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.05 E-value=1.1 Score=45.71 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=17.6
Q ss_pred eEEEEEcCCcchHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVY 69 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~ 69 (1051)
+.+.|.|..|.||||++..+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 589999999999998776554
No 401
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.04 E-value=0.13 Score=48.97 Aligned_cols=25 Identities=40% Similarity=0.372 Sum_probs=22.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
-.+++|.|+.|.|||||++.++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3689999999999999999999865
No 402
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.04 E-value=0.11 Score=52.09 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.+++|.|+.|.|||||++.+.....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999987653
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.00 E-value=0.14 Score=52.49 Aligned_cols=26 Identities=23% Similarity=0.087 Sum_probs=23.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
...|.|.|+.|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.94 E-value=0.14 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 405
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.94 E-value=0.64 Score=53.99 Aligned_cols=39 Identities=26% Similarity=0.216 Sum_probs=28.2
Q ss_pred HHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 37 LRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 37 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
+...|..+-..-.+++|.|..|+|||||++.++......
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 444454321233689999999999999999999766543
No 406
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.91 E-value=0.1 Score=52.84 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
-.+++|+|+.|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998855
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.91 E-value=0.12 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHH
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 408
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.86 E-value=0.12 Score=54.57 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
++|+|.|+.|+||||||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 689999999999999999998764
No 409
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.81 E-value=0.2 Score=50.24 Aligned_cols=27 Identities=15% Similarity=0.001 Sum_probs=22.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
-.|.+.|.||+||||+|..++.....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 358899999999999999988876554
No 410
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.81 E-value=0.12 Score=52.09 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=23.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
-.+++|.|+.|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999998765
No 411
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.81 E-value=0.13 Score=51.96 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
..|+|.|+.|+||||+|+.+++++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.75 E-value=0.14 Score=52.06 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.|+|.|+.|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 413
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.75 E-value=0.21 Score=54.43 Aligned_cols=51 Identities=27% Similarity=0.316 Sum_probs=35.2
Q ss_pred HHHHHHHHhc-CCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 33 RLEKLRFLMG-TGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 33 ~~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
-...|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|+.
T Consensus 47 G~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 47 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3445666665 22233478999999999999999998876654434455654
No 414
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.74 E-value=0.12 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+++|+|+.|+|||||++.++..++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998664
No 415
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.63 E-value=0.14 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.|+|.|+.|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999866
No 416
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.48 E-value=0.092 Score=55.72 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
...+|+|.|..|.||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988654
No 417
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.42 E-value=0.19 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=20.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
-.+++|.|+.|.|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999884
No 418
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.32 E-value=0.15 Score=53.73 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.6
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.++|+|.|+.|+||||||..++.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4789999999999999999999864
No 419
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.30 E-value=0.28 Score=51.15 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=24.6
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
....++++.|.||+||||++..++..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999998766
No 420
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.27 E-value=0.43 Score=43.50 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=31.3
Q ss_pred EEEEcCCCCC--CCCCCCCCCCeeEEEcCccCccccccc-ccCCCCCCEEecCCCC
Q 048831 423 LLNWHRYPLK--SLPSNLQLDKIVEFQMCYSHIEELWKG-IKPLNTLKVMKLSHSE 475 (1051)
Q Consensus 423 ~L~l~~~~l~--~lp~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~L~~~~ 475 (1051)
.++.++..++ ++|..+ +.+|+.|+|++|++..++.+ +..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555666666 666543 34566677777777666654 4556666666666553
No 421
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.21 E-value=0.23 Score=56.78 Aligned_cols=47 Identities=9% Similarity=-0.057 Sum_probs=32.7
Q ss_pred ccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 28 VGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 28 vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..|.+-.+.+.+..........+|.+.|++|.||||+|++++.++..
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34444444555544222233478999999999999999999998864
No 422
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.18 E-value=0.18 Score=51.73 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
....+|+|.|+.|.||||+++.++.++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 445789999999999999999998865
No 423
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.06 E-value=0.26 Score=52.90 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=25.1
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
...++|+|+|-||+||||+|..++..+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 356889999999999999999998877654
No 424
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.01 E-value=0.24 Score=48.44 Aligned_cols=26 Identities=23% Similarity=0.083 Sum_probs=21.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+++.|+|+.|+||||+|..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999777766543
No 425
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.94 E-value=0.27 Score=48.98 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=25.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcccc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFY 77 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 77 (1051)
+.|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57999999999999999999998876544
No 426
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.75 E-value=0.15 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=21.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
+.|.|.|++|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998753
No 427
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.69 E-value=0.21 Score=53.60 Aligned_cols=28 Identities=39% Similarity=0.426 Sum_probs=24.4
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
....+|+|.|+.|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3447999999999999999999988765
No 428
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.64 E-value=0.12 Score=52.86 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=16.5
Q ss_pred eeEEEEEcCCcchHHHHHHHHH-HHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVY-DLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~-~~~ 72 (1051)
..+++|.|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 429
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.62 E-value=0.3 Score=51.19 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=23.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
++|+|.|-||+||||+|..++..+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 578889999999999999999877654
No 430
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.55 E-value=0.31 Score=51.76 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=27.7
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
..++++|+|.+|+||||++..++..++.. ...+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 35799999999999999999999877654 3344443
No 431
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.43 E-value=0.19 Score=51.52 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHH
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
.. .+++|.|+.|.|||||++.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 78999999999999999999863
No 432
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.40 E-value=0.25 Score=50.35 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=24.9
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
...+|+|.|+.|+||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3478999999999999999999998765
No 433
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.38 E-value=2.2 Score=43.38 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=27.8
Q ss_pred ccchhHHHHHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 28 VGIESRLEKLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 28 vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.=|+...+.+..++.. +-+.|+|+.|.|||.+|..++...
T Consensus 93 ~l~~~Q~~ai~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC-----CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 3345555555555532 127889999999999998887764
No 434
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.20 E-value=0.26 Score=64.93 Aligned_cols=47 Identities=30% Similarity=0.383 Sum_probs=33.4
Q ss_pred HHHHhc-CCCCCeeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEe
Q 048831 37 LRFLMG-TGSTDVRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLA 83 (1051)
Q Consensus 37 l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 83 (1051)
|..+|. .+-...+.|.|+|++|+|||+||.+++.....+-..+.|+.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 445554 11134579999999999999999999887665544556664
No 435
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.09 E-value=0.3 Score=52.06 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=23.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
.+++|.|.+|+|||||++.++..+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999876544
No 436
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.05 E-value=0.22 Score=51.21 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.2
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
...|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998764
No 437
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.04 E-value=0.56 Score=51.02 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.+..+|+|.|.+|+||||++..+...+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999876554
No 438
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.03 E-value=0.22 Score=54.53 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998764
No 439
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.02 E-value=0.21 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=21.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
.+|.|.|++|.||||+|+++.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 440
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.00 E-value=2 Score=49.51 Aligned_cols=36 Identities=11% Similarity=-0.081 Sum_probs=27.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcc-ccceEEEe
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHE-FYASSFLA 83 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 83 (1051)
-.++.|.|.+|+||||+|..++.....+ -..++|+.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 4689999999999999999998877654 23445543
No 441
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.83 E-value=0.4 Score=48.11 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=24.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
...|+|.|+.|.||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999988654
No 442
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.82 E-value=0.34 Score=51.07 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.+++|.|++|+||||||..++..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 68999999999999999999875543
No 443
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.81 E-value=0.17 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.161 Sum_probs=21.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
.+++|.|+.|.|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999865
No 444
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.59 E-value=0.35 Score=51.24 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=23.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
++|+|.|-||+||||+|..++..+...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 678889999999999999999877654
No 445
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.57 E-value=0.19 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
-.+++|.|+.|.|||||++.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999875
No 446
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.44 E-value=0.19 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.+++|.|+.|.|||||++.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999885
No 447
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=88.38 E-value=0.27 Score=48.93 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=23.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
.+|+|.|+.|.||||+|+.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999874
No 448
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.32 E-value=0.47 Score=51.73 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=27.6
Q ss_pred HHHHHhcCCCCCeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 36 KLRFLMGTGSTDVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 36 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.|..+|..+-..-.++.|+|+.|+|||||+..++..+
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444554222345799999999999999999998865
No 449
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.32 E-value=0.4 Score=55.50 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=24.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..+|+|.|+.|.|||||++.++..+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 3689999999999999999999987643
No 450
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.18 E-value=0.2 Score=56.22 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
...+|.|+|++|.||||+|++++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999988754
No 451
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.13 E-value=0.22 Score=51.08 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
-.+++|.|+.|.|||||++.++.-+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998643
No 452
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.00 E-value=0.68 Score=42.17 Aligned_cols=53 Identities=15% Similarity=0.121 Sum_probs=44.2
Q ss_pred EEEecCcccC--CcccccCcCceEEEEcCCCCCCCCCCC--CCCCeeEEEcCccCcc
Q 048831 402 FLNIGNVQLP--EGLEYLSNKLRLLNWHRYPLKSLPSNL--QLDKIVEFQMCYSHIE 454 (1051)
Q Consensus 402 ~L~l~~~~l~--~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~l~~~~i~ 454 (1051)
.++.+++.+. ..+..++.+|+.|++++|.++.+|... .+.+|+.|+|.+|...
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5667777766 666678889999999999999999876 6889999999998653
No 453
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.99 E-value=0.22 Score=51.38 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
.+++|.|+.|.|||||++.++.-++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 58999999999999999999875543
No 454
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=87.94 E-value=1 Score=50.68 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=24.8
Q ss_pred eEEEEEcCCcchHHHHHH-HHHHHHhccccceEEEeehhh
Q 048831 49 RMIGIWGMGGLGKTTLAR-VVYDLISHEFYASSFLADVRE 87 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~-~v~~~~~~~f~~~~~~~~~~~ 87 (1051)
+.++|.|.+|+|||+||. .+.+... -+..+.+..+.+
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGe 200 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVAIGQ 200 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEEESC
T ss_pred CEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEECCC
Confidence 568999999999999964 6665432 343444444444
No 455
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.92 E-value=0.95 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=20.1
Q ss_pred eEEEEEcCCcchHHHHH-HHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLA-RVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA-~~v~~~~~ 73 (1051)
+.++|.|.+|+|||+|| ..+.+...
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHh
Confidence 46899999999999995 56666554
No 456
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.90 E-value=0.43 Score=55.07 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=25.3
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
...+|.++|++|.||||+|++++..+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 346899999999999999999998765444
No 457
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.82 E-value=0.27 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
.+++|.|+.|.|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 458
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.81 E-value=0.61 Score=50.56 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=24.7
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
....+++|.|+.|+|||||.+.+...+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 44579999999999999999999876543
No 459
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.78 E-value=0.24 Score=60.76 Aligned_cols=53 Identities=25% Similarity=0.324 Sum_probs=39.7
Q ss_pred CCccccchhHHHHHHHHhcCC-----------CCCeeEEEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 24 VKELVGIESRLEKLRFLMGTG-----------STDVRMIGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 24 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
..+++|.+...++|.+.+... -...+.+.++|++|+||||||++++......|
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356788888888887776421 12345689999999999999999999875443
No 460
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.74 E-value=0.28 Score=48.26 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.4
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
...|+|.|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 461
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.72 E-value=0.23 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.+++|.|+.|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999875
No 462
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=87.67 E-value=0.61 Score=51.75 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=21.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
+.++|.|.+|+|||+|+..+++....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 44789999999999999998886544
No 463
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.61 E-value=0.28 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.5
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
-.+++|.|+.|.|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 464
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.57 E-value=0.24 Score=51.60 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=21.3
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
-.+++|.|+.|.|||||++.++.-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999853
No 465
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.56 E-value=0.62 Score=51.71 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+-++|.|.+|+|||+|+..+++...
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CEEEEecCCCCCchHHHHHHHHHHH
Confidence 4578999999999999999887644
No 466
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.53 E-value=0.24 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.+++|.|+.|.|||||++.++..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998644
No 467
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.52 E-value=0.25 Score=50.77 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.+++|.|+.|.|||||++.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999985
No 468
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.46 E-value=0.21 Score=50.13 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
.+++|.|+.|.|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999863
No 469
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.45 E-value=0.38 Score=47.24 Aligned_cols=25 Identities=28% Similarity=0.121 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHH
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
....|+|+|.+|+|||||+.++...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998763
No 470
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.36 E-value=0.35 Score=45.66 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
+-|+|.|.+|+|||||+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998863
No 471
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.34 E-value=0.27 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
-.+++|.|+.|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999985
No 472
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.32 E-value=0.25 Score=51.53 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.+++|.|+.|.|||||++.++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999999985
No 473
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.31 E-value=0.25 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.3
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
-.+++|.|+.|.|||||++.++.-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 368999999999999999999863
No 474
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.29 E-value=0.26 Score=51.24 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.+++|.|+.|.|||||++.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 475
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.29 E-value=0.39 Score=50.90 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHH
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.-.+++|+|+.|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999998866
No 476
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=87.27 E-value=0.83 Score=52.00 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=24.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHhcccc
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLISHEFY 77 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 77 (1051)
+.+.|.|.+|+||||++.++...+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999987665443
No 477
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.27 E-value=0.37 Score=46.04 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
..|+|.|.+|+|||||..++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999875
No 478
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.22 E-value=0.26 Score=50.78 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=20.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.+++|.|+.|.|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 479
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.07 E-value=0.31 Score=48.24 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
...|+|.|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 480
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.01 E-value=0.45 Score=47.95 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.9
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
....|+|.|+.|.||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3478999999999999999999998765
No 481
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.01 E-value=0.27 Score=50.91 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
-.+++|.|+.|.|||||++.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999985
No 482
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.97 E-value=0.27 Score=51.11 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.+++|.|+.|.|||||++.++.-+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999998643
No 483
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=86.92 E-value=1.3 Score=49.83 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=24.8
Q ss_pred eEEEEEcCCcchHHHHHH-HHHHHHhccccceEEEeehhh
Q 048831 49 RMIGIWGMGGLGKTTLAR-VVYDLISHEFYASSFLADVRE 87 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~-~v~~~~~~~f~~~~~~~~~~~ 87 (1051)
+.++|.|.+|+|||+||. .+.+... -+..+.+..+.+
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGe 213 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQ 213 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESC
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCC
Confidence 568999999999999964 6665432 343444444444
No 484
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.83 E-value=0.52 Score=47.95 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=24.8
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhcc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHE 75 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 75 (1051)
..+|+|.|+.|+||||+++.+.+.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999987654
No 485
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=86.83 E-value=0.49 Score=47.01 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=24.9
Q ss_pred eEEEEE-cCCcchHHHHHHHHHHHHhccccceEEE
Q 048831 49 RMIGIW-GMGGLGKTTLARVVYDLISHEFYASSFL 82 (1051)
Q Consensus 49 ~~v~I~-G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 82 (1051)
++|+|+ +-||+||||+|..++..+..+-..+..+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 567777 7799999999999998776643333333
No 486
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.80 E-value=0.38 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
+-|.|.|.+|+||||+|.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 57899999999999999999874
No 487
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.68 E-value=0.29 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.0
Q ss_pred eeEEEEEcCCcchHHHHHHHHHH
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
-.+++|.|+.|.|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999985
No 488
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.65 E-value=0.31 Score=47.57 Aligned_cols=21 Identities=38% Similarity=0.427 Sum_probs=19.0
Q ss_pred EEEEEcCCcchHHHHHHHHHH
Q 048831 50 MIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 50 ~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
-|+|.|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999875
No 489
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=86.63 E-value=0.79 Score=53.14 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.9
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
..+|.+.|+.|.||||+|+.+..++..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 478999999999999999999987654
No 490
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=86.57 E-value=0.53 Score=48.53 Aligned_cols=26 Identities=31% Similarity=0.689 Sum_probs=22.3
Q ss_pred EEEEcCCcchHHHHHHHHHHHHhccc
Q 048831 51 IGIWGMGGLGKTTLARVVYDLISHEF 76 (1051)
Q Consensus 51 v~I~G~gGiGKTtLA~~v~~~~~~~f 76 (1051)
|+|.|-||+||||+|..++..+...-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g 28 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY 28 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC
Confidence 56699999999999999998877653
No 491
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.53 E-value=0.68 Score=50.26 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.7
Q ss_pred CCeeEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 46 TDVRMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 46 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
...+++.+.|.||+||||+|..++..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3458999999999999999999998777
No 492
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=86.51 E-value=0.9 Score=51.11 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=24.8
Q ss_pred eEEEEEcCCcchHHHHHH-HHHHHHhccccceEEEeehhh
Q 048831 49 RMIGIWGMGGLGKTTLAR-VVYDLISHEFYASSFLADVRE 87 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~-~v~~~~~~~f~~~~~~~~~~~ 87 (1051)
+.++|.|.+|+|||+||. .+.+... -+..+.+..+.+
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGe 201 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIGQ 201 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEESC
T ss_pred CEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCC
Confidence 568999999999999964 6665432 343444444444
No 493
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.44 E-value=0.3 Score=50.96 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYD 70 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~ 70 (1051)
.+++|.|+.|.|||||++.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999885
No 494
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.42 E-value=0.3 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDL 71 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~ 71 (1051)
.+++|.|+.|.|||||++.++..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999864
No 495
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=86.41 E-value=0.69 Score=53.93 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=24.4
Q ss_pred CeeEEEEEcCCcchHHHHHHHHHHHHhc
Q 048831 47 DVRMIGIWGMGGLGKTTLARVVYDLISH 74 (1051)
Q Consensus 47 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 74 (1051)
...+|.|.|++|.||||+|+++.+++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 3468999999999999999999987653
No 496
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.40 E-value=0.3 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
.+++|.|+.|.|||||++.++.-+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998643
No 497
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=86.35 E-value=0.78 Score=51.26 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHh
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLIS 73 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~~ 73 (1051)
+.++|.|.+|+|||+|+..++....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578899999999999999988654
No 498
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=86.31 E-value=0.4 Score=48.33 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 048831 49 RMIGIWGMGGLGKTTLARVVYDLI 72 (1051)
Q Consensus 49 ~~v~I~G~gGiGKTtLA~~v~~~~ 72 (1051)
-.++|.|++|+||||+|+.+.+++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998865
No 499
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=86.25 E-value=0.51 Score=50.93 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=26.7
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEE
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSF 81 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 81 (1051)
.+++...|-||+||||+|..++..+...-..+..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLl 47 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLV 47 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEE
Confidence 5788889999999999999999877665333333
No 500
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.22 E-value=1 Score=50.11 Aligned_cols=85 Identities=15% Similarity=0.120 Sum_probs=47.2
Q ss_pred eeEEEEEcCCcchHHHHHHHHHHHHhccccceEEEeehhhhhhcCCCHHHHHHHHHHHHhccCCCccccchhhHHHHHHh
Q 048831 48 VRMIGIWGMGGLGKTTLARVVYDLISHEFYASSFLADVRERFEKEGSVISLQKQLLSNLLKLGDISIWHVDDGINIIGSR 127 (1051)
Q Consensus 48 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 127 (1051)
-.+++|.|+.|.||||+++.+...+... ...+++..-.-.....+. . ...............++..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ed~ie~~~~~~------------~-q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFDIDGI------------G-QTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSCCSSS------------E-EEECBGGGTBCHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEecccchhccCCc------------c-eEEEccccCcCHHHHHHHH
Confidence 3689999999999999999999877554 334443311000000000 0 0000000001223456666
Q ss_pred hCCCeEEEEEeCCCCHHHH
Q 048831 128 LRQQKVLLVIDDVADVEQL 146 (1051)
Q Consensus 128 l~~k~~LlVlDdv~~~~~~ 146 (1051)
++..+-++++.++.+.+..
T Consensus 233 Lrq~pd~i~vgEiRd~et~ 251 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETA 251 (418)
T ss_dssp GGGCCSEEEESCCCSHHHH
T ss_pred hccCCCeEEEcCcCCHHHH
Confidence 7777777888888776543
Done!