BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048832
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX
PE=1 SV=1
Length = 288
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 58 VGLDVEWRPSFSRQQNP--VATLQLCV-GRRCLIFQIIHARRIPQSLANFLSDEDYTFVG 114
VGLD+EWRPSF + P VAT+Q+CV C + I H+ IPQSL + + D VG
Sbjct: 130 VGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFHSG-IPQSLQHLIEDSTLVKVG 188
Query: 115 VGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNI 174
+GIDGD KL ++YG+ + DL LA + +I G + GL +L+ ++ KE+ KP I
Sbjct: 189 IGIDGDSVKLFHDYGVSIKDVEDLSDLANQ--KIGGDKKWGLASLTETLVCKELLKPNRI 246
Query: 175 TLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLN 207
L W+ L+ Q+ YA DA+ ++ + +VL
Sbjct: 247 RLGNWEFYPLSKQQLQYAATDAYASWHLYKVLK 279
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 81.6 bits (200), Expect = 4e-15, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 6/157 (3%)
Query: 57 IVGLDVEWRPSFSR-QQNPVATLQLCVG-RRCLIFQIIHARRIPQSLANFLSDEDYTFVG 114
++G D+EW P +++ + VA +Q+CV ++C +F I P+ L L DE VG
Sbjct: 72 VLGFDIEWPPVYTKGKTGKVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKVG 131
Query: 115 VGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLEI-EGLRFAGLKALSWEVLEKEVNKPRN 173
VGI+GD KL ++Y L++ ++L +A + L E F GL + ++++ K ++
Sbjct: 132 VGIEGDQWKLMSDYELKLKGFIELSEMANQKLRCKEKWTFNGLIK---HLFKEQLYKRKS 188
Query: 174 ITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNAND 210
S WD +LT Q LYA DA+ I + L D
Sbjct: 189 YRCSNWDIFLLTEDQKLYAATDAYAGLLIYKKLEGMD 225
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Query: 57 IVGLDVEWRPSFSRQQ-NPVATLQLCVGR-RCLIFQIIHARRIPQSLANFLSDEDYTFVG 114
+VG D+EW P ++R + VA +QLCV +C +F + PQ L L ++ G
Sbjct: 78 VVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAG 137
Query: 115 VGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNI 174
VGI+GD KL ++ +++ V+L +A + L+ L +L +L K++ K ++I
Sbjct: 138 VGIEGDQWKLLRDFDIKLKNFVELTDVANKKLKC--TETWSLNSLVKHLLGKQLLKDKSI 195
Query: 175 TLSAWDTRVLTPAQVLYACLDAFIAFEIGRVL 206
S W LT Q LYA DA+ F I R L
Sbjct: 196 RCSNWSKFPLTEDQKLYAATDAYAGFIIYRNL 227
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 74.7 bits (182), Expect = 5e-13, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 4/148 (2%)
Query: 57 IVGLDVEWRPSFSR-QQNPVATLQLCVGR-RCLIFQIIHARRIPQSLANFLSDEDYTFVG 114
+VG D+EW P + +++ VA +QLCV +C +F I PQ L L ++ G
Sbjct: 72 VVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKKAG 131
Query: 115 VGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNI 174
VGI+GD KL ++ +++ V+L +A E L+ L L VL K++ K ++I
Sbjct: 132 VGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCA--ETWSLNGLVKHVLGKQLLKDKSI 189
Query: 175 TLSAWDTRVLTPAQVLYACLDAFIAFEI 202
S W LT Q LYA DA+ I
Sbjct: 190 RCSNWSNFPLTEDQKLYAATDAYAGLII 217
>sp|Q5UQM4|YR431_MIMIV Putative 3'-5' exonuclease R431 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R431 PE=4 SV=1
Length = 399
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 15/181 (8%)
Query: 31 VTRSPSVVDDWISEIERIHRRRLHCLIVGLDVEWRPSFSRQQNPVATLQLCVGRRCLIFQ 90
VT +VD+WI + L I+GLD E S + ++ +QL + +I Q
Sbjct: 114 VTSDFQIVDNWIEN----NIYDLKQEIIGLDTE--TLISGKSEKISIIQLSTSKHNIIIQ 167
Query: 91 IIHARRIPQSLANFLSDEDYTFVGVGIDGDVKKLENNYGL--QVFRTVDLRPLAAED--- 145
+ +PQ+L DE VGV ID D KKL + Q+ +T+DL L +
Sbjct: 168 VNQMNTLPQNLNKVFFDESIIKVGVAIDIDAKKLLQYFPTINQIKKTLDLSDLFKQTNFT 227
Query: 146 --LEIEGLRFAGLKALSWEVLEKEV-NK-PRNITLSAWDTRVLTPAQVLYACLDAFIAFE 201
+ I GLK L+ VL+ + NK I S W+ VLT QV YA D++++
Sbjct: 228 KHISINPKESIGLKILAAHVLDLYIENKGDSEIKKSNWNNPVLTSDQVKYAITDSYLSLM 287
Query: 202 I 202
I
Sbjct: 288 I 288
>sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens
GN=EXD2 PE=1 SV=2
Length = 621
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 14/155 (9%)
Query: 57 IVGLDVEWRPSFSRQQNPVATLQ------LCVGRRCLIFQIIHARRIPQSLANFLSDEDY 110
++G+D EW + + +P++ LQ LCV R L I + +P++L + L+D
Sbjct: 104 VLGIDCEWV-NLEGKASPLSLLQMASPSGLCVLVR-LPKLICGGKTLPRTLLDILADGTI 161
Query: 111 TFVGVGIDGDVKKLENNYGLQVFRTVDLRPLAA---EDLEIEGLRFAGLKALSWEVLEKE 167
VGVG D KL +YGL V +DLR LA +L GL LK+L+ VL
Sbjct: 162 LKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGL---SLKSLAETVLNFP 218
Query: 168 VNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEI 202
++K + S WD LT QV+YA DA I+ +
Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVAL 253
>sp|B4M401|WRNXO_DROVI Werner Syndrome-like exonuclease OS=Drosophila virilis GN=WRNexo
PE=3 SV=2
Length = 330
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 8/153 (5%)
Query: 58 VGLDVEWRPSFSRQQNPVATLQLCVGRRCL-IFQIIHARRIPQSLANFLSDEDYTFVGVG 116
+ D+EW SF + +Q+CV RC ++Q+ +RIP +L L+ GV
Sbjct: 136 LAFDMEWPFSFQTGPGKSSVIQICVEERCCYVYQLSKLKRIPAALVALLNHSKVRLHGVN 195
Query: 117 IDGDVKKLENNYG-----LQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKP 171
I D +KLE ++ + + +DL E E G R++ L+ L+ + +K ++K
Sbjct: 196 IKADFRKLERDFPEVAAEPLIEKCIDLGVWCNEVCETGG-RWS-LERLANFIAKKAMDKS 253
Query: 172 RNITLSAWDTRVLTPAQVLYACLDAFIAFEIGR 204
+ + +S W L Q++YA +D +I I R
Sbjct: 254 KKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYR 286
>sp|B4JF25|WRNXO_DROGR Werner Syndrome-like exonuclease OS=Drosophila grimshawi GN=WRNexo
PE=3 SV=1
Length = 331
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 10/183 (5%)
Query: 28 FTQVTRSPSVVDDWISEIERIHRRRLHCLIVGLDVEWRPSFSRQQNPVATLQLCVGRRCL 87
FT+ + D+ + +E+ + + + + D+EW SF + +Q+CV RC
Sbjct: 109 FTESQEIAASADEVMQWVEK--QINMDVVPMAFDMEWPFSFQTGPGKSSVIQICVDERCC 166
Query: 88 -IFQIIHARRIPQSLANFLSDEDYTFVGVGIDGDVKKLENNYGLQ-----VFRTVDLRPL 141
++Q+ +IP +LA ++ GV I D +KLE ++ + + VDL
Sbjct: 167 YVYQLSKLNKIPAALAALINHPKVRLHGVNIKADFRKLERDFPEMSAEPLIEKCVDLGVW 226
Query: 142 AAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFE 201
+ E G R++ L+ L+ + +K ++K + + +S W L Q++YA +D +I
Sbjct: 227 CNQVCETGG-RWS-LERLANFIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQV 284
Query: 202 IGR 204
I R
Sbjct: 285 IYR 287
>sp|Q9VE86|WRNXO_DROME Werner Syndrome-like exonuclease OS=Drosophila melanogaster
GN=WRNexo PE=1 SV=2
Length = 353
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 8/165 (4%)
Query: 48 IHRRRLHCLIVGLDVEWRPSFSRQQNPVATLQLCVGRRCL-IFQIIHARRIPQSLANFLS 106
+ +++ + + D+EW SF A +Q+CV +C I+Q+ + +++P +L ++
Sbjct: 149 VEKQKDEVVPMAFDMEWPFSFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLPAALVALIN 208
Query: 107 DEDYTFVGVGIDGDVKKLENNYG-----LQVFRTVDLRPLAAEDLEIEGLRFAGLKALSW 161
GV I D +KL ++ + + VDL E E G R++ L+ L+
Sbjct: 209 HPKVRLHGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGG-RWS-LERLTN 266
Query: 162 EVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVL 206
+ +K ++K + + +S W L Q++YA +D +I I R L
Sbjct: 267 FIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREL 311
>sp|B4N9D3|WRNXO_DROWI Werner Syndrome-like exonuclease OS=Drosophila willistoni GN=WRNexo
PE=3 SV=2
Length = 356
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 10/177 (5%)
Query: 36 SVVDDWISEIERIHRRRLHCLIVGLDVEWRPSFSRQQNPVATLQLCVGRRCL-IFQIIHA 94
+ DD I I++ + L + + D+EW SF + +Q+CV RC ++Q+
Sbjct: 142 ASADDVIQWIDK--QTTLDVVPMAFDMEWPFSFQTGPGKSSVIQVCVDERCCYVYQLSKL 199
Query: 95 RRIPQSLANFLSDEDYTFVGVGIDGDVKKLENNY-----GLQVFRTVDLRPLAAEDLEIE 149
+++P +L L+ GV I D +KL+ ++ + + VDL E E
Sbjct: 200 KKLPAALVALLNHPKVRLHGVNIKADFRKLQRDFPEVSADPLIEKCVDLGVWCNEICETG 259
Query: 150 GLRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVL 206
G R++ L+ L+ + +K ++K + + +S W L Q++YA +D +I I R L
Sbjct: 260 G-RWS-LERLANFIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDL 314
>sp|B4K934|WRNXO_DROMO Werner Syndrome-like exonuclease OS=Drosophila mojavensis GN=WRNexo
PE=3 SV=1
Length = 329
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 51 RRLHCLIVGL--DVEWRPSFSRQQNPVATLQLCVGRRCL-IFQIIHARRIPQSLANFLSD 107
++ H IV + D+EW SF + +Q+CV RC ++Q+ + ++IP +L ++
Sbjct: 126 QQTHTEIVPMAFDMEWPFSFQTGPGKSSVIQICVDERCCYVYQLSNLKKIPAALVALINH 185
Query: 108 EDYTFVGVGIDGDVKKLENNYG-----LQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWE 162
GV I D +KL ++ + + VDL E E G R++ L+ L+
Sbjct: 186 PKVRLHGVNIKADFRKLARDFPEVAAEPLIEKCVDLGVWCNEVCETGG-RWS-LERLANF 243
Query: 163 VLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGR 204
+ +K ++K + + +S W L Q++YA +D +I I R
Sbjct: 244 IAKKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYR 285
>sp|B3NZ68|WRNXO_DROER Werner Syndrome-like exonuclease OS=Drosophila erecta GN=WRNexo
PE=3 SV=1
Length = 354
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
Query: 48 IHRRRLHCLIVGLDVEWRPSFSRQQNPVATLQLCVGRRCL-IFQIIHARRIPQSLANFLS 106
+ +++ + + D+EW SF A +Q+CV +C I+Q+ + +++P L ++
Sbjct: 150 VEKQKDEVVPMAFDMEWPFSFQTGPGKSAVIQICVDEKCCYIYQLTNLKKLPAVLVALIN 209
Query: 107 DEDYTFVGVGIDGDVKKLENNYG-----LQVFRTVDLRPLAAEDLEIEGLRFAGLKALSW 161
GV I D +KL ++ + + VDL E E G R++ L+ L+
Sbjct: 210 HSKVRLHGVNIKNDFRKLARDFPEVSAEPLIEKCVDLGVWCNEVCETGG-RWS-LERLTN 267
Query: 162 EVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVL 206
+ +K ++K + + +S W L Q++YA +D +I I R L
Sbjct: 268 FIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREL 312
>sp|B4I298|WRNXO_DROSE Werner Syndrome-like exonuclease OS=Drosophila sechellia GN=WRNexo
PE=3 SV=2
Length = 354
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 8/165 (4%)
Query: 48 IHRRRLHCLIVGLDVEWRPSFSRQQNPVATLQLCVGRRCL-IFQIIHARRIPQSLANFLS 106
+ +++ + + D+EW SF + +Q+CV +C I+Q+ + +++P +L ++
Sbjct: 150 VEKQKDDVVPMAFDMEWPFSFQTGPGKSSVIQICVDEKCCYIYQLTNVKKLPAALVALIN 209
Query: 107 DEDYTFVGVGIDGDVKKLENNYG-----LQVFRTVDLRPLAAEDLEIEGLRFAGLKALSW 161
GV I D +KL ++ + + VDL E E G R++ L+ L+
Sbjct: 210 HPKVRLHGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGG-RWS-LERLTN 267
Query: 162 EVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVL 206
+ +K ++K + + +S W L Q++YA +D +I I R L
Sbjct: 268 FIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREL 312
>sp|B4QUF6|WRNXO_DROSI Werner Syndrome-like exonuclease OS=Drosophila simulans GN=WRNexo
PE=3 SV=1
Length = 354
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 8/165 (4%)
Query: 48 IHRRRLHCLIVGLDVEWRPSFSRQQNPVATLQLCVGRRCL-IFQIIHARRIPQSLANFLS 106
+ +++ + + D+EW SF + +Q+CV +C I+Q+ + +++P +L ++
Sbjct: 150 VEKQKDDVVPMAFDMEWPFSFQTGPGKSSVIQICVDEKCCYIYQLTNVKKLPAALVALIN 209
Query: 107 DEDYTFVGVGIDGDVKKLENNYG-----LQVFRTVDLRPLAAEDLEIEGLRFAGLKALSW 161
GV I D +KL ++ + + VDL E E G R++ L+ L+
Sbjct: 210 HPKVRLHGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGG-RWS-LERLTN 267
Query: 162 EVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVL 206
+ +K ++K + + +S W L Q++YA +D +I I R L
Sbjct: 268 FIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREL 312
>sp|B4G5C9|WRNXO_DROPE Werner Syndrome-like exonuclease OS=Drosophila persimilis GN=WRNexo
PE=3 SV=2
Length = 355
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 58 VGLDVEWRPSFSRQQNPVATLQLCVGRRCL-IFQIIHARRIPQSLANFLSDEDYTFVGVG 116
+ D+EW SF + +Q+CV +C ++Q+ + +++P +L ++ GV
Sbjct: 161 MAFDMEWPFSFQTGPGKSSVIQICVDEKCCYVYQLTNLKKLPAALVALINHPKVRLHGVN 220
Query: 117 IDGDVKKLENNY-----GLQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKP 171
I D +KL+ ++ + + VDL E E G R++ L+ L+ + +K ++K
Sbjct: 221 IKADFRKLQRDFPEVSADALIEKCVDLGVWCNEICETGG-RWS-LERLANFIAKKAMDKS 278
Query: 172 RNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVL 206
+ + +S W L Q++YA +D +I I R L
Sbjct: 279 KKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDL 313
>sp|B4PLB3|WRNXO_DROYA Werner Syndrome-like exonuclease OS=Drosophila yakuba GN=WRNexo
PE=3 SV=1
Length = 354
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
Query: 48 IHRRRLHCLIVGLDVEWRPSFSRQQNPVATLQLCVGRRCL-IFQIIHARRIPQSLANFLS 106
+ +++ + + D+EW SF A +Q+CV +C I+Q+ + +++P L ++
Sbjct: 150 VEKQKDEVVPMAFDMEWPFSFQTGPGKSAVIQICVDEKCCYIYQLTNLKKLPAVLVALIN 209
Query: 107 DEDYTFVGVGIDGDVKKLENNYG-----LQVFRTVDLRPLAAEDLEIEGLRFAGLKALSW 161
GV I D +KL ++ + + VDL E E G R++ L+ L+
Sbjct: 210 HPKVRLHGVNIKNDFRKLARDFPEVSAEPLIEKCVDLGLWCNEVCETGG-RWS-LERLTN 267
Query: 162 EVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVL 206
+ +K ++K + + +S W L Q++YA +D +I I R L
Sbjct: 268 FIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREL 312
>sp|Q299L3|WRNXO_DROPS Werner Syndrome-like exonuclease OS=Drosophila pseudoobscura
pseudoobscura GN=WRNexo PE=3 SV=2
Length = 356
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 58 VGLDVEWRPSFSRQQNPVATLQLCVGRRCL-IFQIIHARRIPQSLANFLSDEDYTFVGVG 116
+ D+EW SF + +Q+CV +C ++Q+ + +++P +L ++ GV
Sbjct: 162 MAFDMEWPFSFQTGPGKSSVIQICVDEKCCYVYQLTNLKKLPAALVALINHPKVRLHGVN 221
Query: 117 IDGDVKKLENNY-----GLQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKP 171
I D +KL+ ++ + + VDL E E G R++ L+ L+ + +K ++K
Sbjct: 222 IKADFRKLQRDFPEVSADALIEKCVDLGVWCNEICETGG-RWS-LERLANFIAKKAMDKS 279
Query: 172 RNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVL 206
+ + +S W L Q++YA +D +I I R L
Sbjct: 280 KKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDL 314
>sp|Q8VEG4|EXD2_MOUSE Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus
GN=Exd2 PE=2 SV=1
Length = 496
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 91 IIHARRIPQSLANFLSDEDYTFVGVGIDGDVKKLENNYGLQVFRTVDLRPLA---AEDLE 147
I R +P++L + L+D VGVG D KL +YGL V +DLR LA ++
Sbjct: 17 IYGGRTLPRTLLDILADGAILKVGVGCSEDANKLLQDYGLIVRGCLDLRYLAMKQGNNIL 76
Query: 148 IEGLRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEI 202
GL LK+L+ +L ++K + S WD LT QV YA DA I+ +
Sbjct: 77 CNGL---SLKSLAETILNFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISVAL 128
>sp|B3LWP6|WRNXO_DROAN Werner Syndrome-like exonuclease OS=Drosophila ananassae GN=WRNexo
PE=3 SV=2
Length = 355
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 48 IHRRRLHCLIVGLDVEWRPSFSRQQNPVATLQLCVGRRCL-IFQIIHARRIPQSLANFLS 106
+ +++ + + D+EW SF + +Q+CV +C I+Q+ + +++P +L ++
Sbjct: 151 VEKQKEDVVPMAFDMEWPFSFQTGPGKSSVIQICVDEKCCYIYQLTNLKKLPSALVALIN 210
Query: 107 DEDYTFVGVGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLEIE---------------GL 151
GV I D +KL+ ++ P + D IE G
Sbjct: 211 HPKVRLHGVNIKADFRKLQRDF-----------PEVSADALIEKCVDLGVWCNVICQTGG 259
Query: 152 RFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVL 206
R++ L+ L+ + K ++K + + +S W L Q++YA +D +I I R L
Sbjct: 260 RWS-LERLANFICRKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDL 313
>sp|Q8N9H8|MUT7_HUMAN Probable exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=1
SV=3
Length = 876
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 77/177 (43%), Gaps = 32/177 (18%)
Query: 57 IVGLDVEWRPSFSRQQNPVATL-QLCVGRRCLIFQIIHARRIPQS---------LANFLS 106
+VG+DVEW P F P +L Q+ V + ++ + P +A LS
Sbjct: 395 VVGVDVEWTPVFVAGGRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQAFSRLVAQLLS 454
Query: 107 DEDYTFVGVGIDGDVKKLENN------YGLQVFRTVDLR-----------PLAAEDLEIE 149
D T +G G+ GD++KL + Q+ +DL P A D E
Sbjct: 455 DPSITKLGYGMVGDLQKLGTSCPALAHVEKQILGGMDLLLVHRQMRVASVPAPAVDRARE 514
Query: 150 GLRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVL 206
LR GL L +VL ++K + LS WD R L QV+YA DA+ E+ + L
Sbjct: 515 -LR--GLSLLVQQVLGTALDKTQQ--LSNWDRRPLCEEQVIYAAADAYCLLEVHQAL 566
>sp|Q9VIF1|MUT7_DROME Probable exonuclease mut-7 homolog OS=Drosophila melanogaster
GN=CG9247 PE=1 SV=1
Length = 625
Score = 37.7 bits (86), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 29/163 (17%)
Query: 57 IVGLDVEWRPSFSRQQNPVATLQLCVGRR-----CLIFQIIHARRIPQSLANFLSDEDYT 111
++ LD EW S N + LQ+ G CL + + + AN ++ +
Sbjct: 431 VIYLDSEWMQSVC-GDNQLCVLQIATGHNVYLIDCLARESLRSEHWRLLGANIFNNVNIR 489
Query: 112 FVGVGIDGDVKKLENNYGLQV-----FRTVDLRPLAAEDLEIEGLRFA------------ 154
VG + D+ L+ + LQ+ +DLR L LE++ RF
Sbjct: 490 KVGFSMVSDLSVLQRSLPLQLRLQMPHHYLDLRNLW---LELKKQRFGVELPFGNVNRAG 546
Query: 155 -GLKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDA 196
L LS L K++NK S W R L Q+LYA +DA
Sbjct: 547 DALTDLSLACLGKKLNKSNQC--SNWANRPLRREQILYAAIDA 587
>sp|Q9FNG3|Y5645_ARATH Uncharacterized protein At5g06450 OS=Arabidopsis thaliana
GN=At5g06450 PE=1 SV=1
Length = 206
Score = 37.0 bits (84), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 60 LDVEWRPSFSRQQNPVAT-------LQLCVGRRCLIFQIIHARRIPQ-------SLANFL 105
DV W F + T ++L CL R+P+ L F
Sbjct: 51 FDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFL------RLPKPFHDNLKDLYRFF 104
Query: 106 SDEDYTFVGVGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLE 165
+ + TFVGV I+ D+ L N+GL + +++ LAAE L F G + L+ VL
Sbjct: 105 ASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLW 164
Query: 166 KEVNKPRNI 174
++ + +I
Sbjct: 165 SDLGQLDSI 173
>sp|B1MML1|Y4928_MYCA9 UPF0301 protein MAB_4928c OS=Mycobacterium abscessus (strain ATCC
19977 / DSM 44196) GN=MAB_4928c PE=3 SV=1
Length = 208
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 113 VGVGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLE--IEGLR-FAGLKALSWEVLEKEVN 169
GV IDG VK L + G +D P ED+ +EG+R FAG + LE EV
Sbjct: 106 AGVSIDG-VKGLRHVAGRMAMVDLDAEP---EDIAPLVEGIRVFAGYSGWTIGQLEGEVE 161
Query: 170 KPRNITLSAWDTRVLTPAQ 188
+ I LSA + VLT A
Sbjct: 162 RDDWIVLSALPSDVLTDAS 180
>sp|Q4ZHG4|FNDC1_HUMAN Fibronectin type III domain-containing protein 1 OS=Homo sapiens
GN=FNDC1 PE=1 SV=4
Length = 1894
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 21/134 (15%)
Query: 58 VGLDVEWRPSFSRQQNPVATLQLCVGRRCLIFQIIHARRIPQSLANFLSDEDYTFVGVGI 117
+GL V W P PV + G+ + I ++ E Y+F+ +
Sbjct: 53 MGLKVTWDPPKDATSRPVEHYNIAYGKSLKSLKYIK-----------VNAETYSFLIEDV 101
Query: 118 DGDVKKL-----ENNYGLQ--VFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEV-N 169
+ V EN+ G+ V+R P E +EI+G G + V EKEV N
Sbjct: 102 EPGVVYFVLLTAENHSGVSRPVYRAES--PPGGEWIEIDGFPIKGPGPFNETVTEKEVPN 159
Query: 170 KPRNITLSAWDTRV 183
KP + + + D R+
Sbjct: 160 KPLRVRVRSSDDRL 173
>sp|C3PI36|TIG_CORA7 Trigger factor OS=Corynebacterium aurimucosum (strain ATCC 700975 /
DSM 44827 / CN-1) GN=tig PE=3 SV=1
Length = 451
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 66 PSFSRQQNPVATLQLCVGRRCLIFQIIHARRIPQSLANFLSDEDYTFVGVGIDGDVKKLE 125
P F + + P + GR ++ Q+++ +P +++ D +G + D+ KLE
Sbjct: 42 PGFRKGKAPRQLIDARFGRGPILEQVVN-DMLPSRYEQAVTENDLKVIGQP-EIDIAKLE 99
Query: 126 NNYGLQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNK 170
+N ++ VD+RP + E+ +K + E E++V+K
Sbjct: 100 DNDFVEFTAEVDIRP----EFEVPDFSKISVKVPALETSEEDVDK 140
>sp|P34607|MUT7_CAEEL Probable exonuclease mut-7 OS=Caenorhabditis elegans GN=mut-7 PE=1
SV=1
Length = 910
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 24/166 (14%)
Query: 58 VGLDVEWRPS--FSRQQNPVATLQLCVGRRCLIFQIIHARRIP------QSLANFL-SDE 108
VG D EW+PS + + +A +QL + + + Q A+ L D
Sbjct: 432 VGFDSEWKPSNLTAVHDSKIAIIQLFFKNCVWLVDCVELEKANMADDWWQKFASRLFGDS 491
Query: 109 DYTFVGVGIDGDVKKLENNYGLQVFRTV-------DLRPLAAE--DLEIEGLRFAG---- 155
VG + D+ + L+ + DL+ LA D+++E L
Sbjct: 492 PVKVVGFDMRNDLDAMATIPALKSSMKIEDTKNAFDLKRLAENVCDIDMEILELPKKTFK 551
Query: 156 LKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFE 201
L L+ +L E++K S W R L Q++YA LDA + E
Sbjct: 552 LADLTHYLLGLELDKTEQC--SNWQCRPLRKKQIVYAALDAVVVVE 595
>sp|Q0CX45|YAE1_ASPTN Uncharacterized protein yae1 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=yae1 PE=3 SV=1
Length = 220
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 142 AAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVL 184
A +DL+++ + FAGL+ E E ++ + ++ +S W+ RVL
Sbjct: 141 ALKDLDVQAV-FAGLQGAEGEKPETQLGRKGDVAVSGWEKRVL 182
>sp|C1B7P4|Y3450_RHOOB UPF0301 protein ROP_34500 OS=Rhodococcus opacus (strain B4)
GN=ROP_34500 PE=3 SV=1
Length = 201
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 114 GVGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLEIEGLR-FAGLKALSWEVLEKEVNKPR 172
G DG V+ L +G V +D P L +EG+R FAG ++ L+ E+ +
Sbjct: 100 GAQADG-VRGLRRVHGRVVMVDLDSDPEVVAPL-VEGVRIFAGYSGWTYGQLDSELQRDD 157
Query: 173 NITLSAWDTRVLTPAQV 189
I +SA + VL PA+V
Sbjct: 158 WIVISALASDVLAPARV 174
>sp|O34809|YCEG_BACSU Uncharacterized protein YceG OS=Bacillus subtilis (strain 168)
GN=yceG PE=4 SV=1
Length = 537
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 11 QYNTHDEYTVHFYDDVVFTQVTRSPSVV 38
Q+ D+Y +H+ DD+VF Q + PS+V
Sbjct: 500 QFIEEDQYDIHWLDDMVFQQDYKEPSLV 527
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,991,467
Number of Sequences: 539616
Number of extensions: 3151335
Number of successful extensions: 8885
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8829
Number of HSP's gapped (non-prelim): 31
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)