Query 048832
Match_columns 211
No_of_seqs 171 out of 1256
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 00:35:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk0_A Hypothetical protein; h 100.0 3.1E-34 1.1E-38 224.2 14.0 189 15-208 4-205 (206)
2 2e6m_A Werner syndrome ATP-dep 100.0 7.4E-30 2.5E-34 200.4 19.0 184 17-208 8-193 (208)
3 3saf_A Exosome component 10; e 100.0 5.4E-28 1.9E-32 207.3 19.5 167 28-208 109-275 (428)
4 2hbj_A Exosome complex exonucl 99.9 1.9E-25 6.6E-30 191.3 19.3 173 20-208 80-252 (410)
5 1yt3_A Ribonuclease D, RNAse D 99.9 7.9E-25 2.7E-29 185.9 19.3 164 31-208 5-168 (375)
6 3cym_A Uncharacterized protein 99.9 2.9E-21 1E-25 166.7 17.7 161 31-208 20-185 (440)
7 2kfn_A Klenow fragment of DNA 99.8 9.2E-18 3.2E-22 150.3 17.8 164 31-208 9-191 (605)
8 3pv8_A DNA polymerase I; DNA p 99.7 3.1E-17 1E-21 145.9 13.1 146 56-208 30-179 (592)
9 1x9m_A DNA polymerase; DNA plo 99.5 2.9E-14 9.8E-19 129.6 8.3 146 57-208 1-181 (698)
10 4dfk_A DNA polymerase I, therm 99.2 3.5E-11 1.2E-15 106.0 7.9 117 55-208 10-126 (540)
11 1bgx_T TAQ DNA polymerase; DNA 98.3 1.3E-06 4.5E-11 80.6 8.1 114 55-208 304-418 (832)
12 1wlj_A Interferon stimulated g 97.8 0.00031 1.1E-08 53.3 11.4 92 98-208 74-167 (189)
13 3v9w_A Ribonuclease T; DEDD nu 97.7 0.00027 9.2E-09 55.5 10.3 88 99-208 117-219 (235)
14 2p1j_A POLIII, DNA polymerase 97.5 0.0049 1.7E-07 46.4 14.1 87 99-209 84-175 (186)
15 3mxm_B Three prime repair exon 97.3 0.0011 3.7E-08 52.4 8.9 91 99-207 106-212 (242)
16 1y97_A Three prime repair exon 96.4 0.01 3.6E-07 46.3 7.6 92 99-208 101-208 (238)
17 2gui_A DNA polymerase III epsi 95.7 0.1 3.5E-06 39.2 9.8 89 99-209 87-184 (194)
18 3u3y_B Three prime repair exon 95.5 0.045 1.5E-06 44.8 7.6 92 99-208 106-213 (314)
19 1w0h_A 3'-5' exonuclease ERI1; 95.4 0.066 2.3E-06 40.5 8.1 92 99-209 90-194 (204)
20 2qxf_A Exodeoxyribonuclease I; 95.1 0.36 1.2E-05 41.8 12.6 90 100-208 87-199 (482)
21 1zbh_A 3'-5' exonuclease ERI1; 94.2 0.27 9.3E-06 39.7 9.1 92 99-209 158-262 (299)
22 2f96_A Ribonuclease T; RNAse, 94.0 0.17 5.8E-06 39.0 7.2 78 109-208 126-211 (224)
23 1zbu_A ERI-1 homolog, 3'-5' ex 93.5 0.41 1.4E-05 39.6 9.1 92 99-209 208-312 (349)
24 1qht_A Protein (DNA polymerase 92.4 1.7 5.9E-05 39.8 12.3 145 55-206 135-326 (775)
25 3ikm_A DNA polymerase subunit 91.2 0.057 1.9E-06 50.7 1.1 98 110-207 195-344 (1172)
26 3cg7_A CRN-4, cell death-relat 88.8 0.6 2E-05 37.9 5.2 90 100-209 101-208 (308)
27 1s5j_A DNA polymerase I; repli 87.5 11 0.00039 34.8 13.4 101 97-203 260-386 (847)
28 2xri_A ERI1 exoribonuclease 3; 80.0 3.4 0.00011 31.5 5.7 89 99-210 109-214 (224)
29 2gbz_A Oligoribonuclease; ORN, 78.8 11 0.00038 27.8 8.1 29 99-127 90-122 (194)
30 2igi_A Oligoribonuclease; RNAs 67.8 29 0.00098 25.0 7.9 29 99-127 86-118 (180)
31 2py5_A DNA polymerase; protein 64.9 72 0.0025 28.0 13.3 140 55-206 6-180 (575)
32 2a1r_A Poly(A)-specific ribonu 62.4 19 0.00066 30.4 6.7 101 105-207 277-394 (430)
33 3d45_A Poly(A)-specific ribonu 50.9 22 0.00075 30.8 5.3 99 104-207 271-389 (507)
34 1xkm_B Distinctin chain B; por 34.4 29 0.001 16.3 1.9 14 198-211 12-25 (26)
35 4gmj_B CCR4-NOT transcription 33.9 1.7E+02 0.006 23.0 9.4 80 106-208 147-243 (285)
36 1noy_A Protein (DNA polymerase 33.4 41 0.0014 27.8 4.1 68 135-206 267-335 (388)
37 2cof_A Protein KIAA1914; PH do 29.3 1.1E+02 0.0038 19.4 5.6 33 16-48 67-99 (107)
38 3aj4_A Pleckstrin homology dom 28.6 1.1E+02 0.0037 19.5 5.0 31 17-47 78-108 (112)
39 2gv9_A DNA polymerase; polymer 27.9 56 0.0019 31.5 4.4 55 151-206 493-550 (1193)
40 3rcp_A Pleckstrin homology dom 24.7 1.3E+02 0.0045 18.7 5.1 33 15-47 58-90 (103)
41 1wjm_A Beta-spectrin III; PH d 24.5 1.5E+02 0.0052 19.3 5.4 35 15-49 82-116 (123)
42 3cxb_B Pleckstrin homology dom 24.5 1.1E+02 0.0038 19.9 4.4 33 16-48 67-99 (112)
43 1v5m_A SH2 and PH domain-conta 24.3 72 0.0025 22.3 3.3 37 13-49 93-129 (136)
44 2d9v_A Pleckstrin homology dom 23.4 1.5E+02 0.005 19.8 5.0 33 16-48 80-112 (130)
45 1pls_A Pleckstrin homology dom 23.3 1.5E+02 0.0051 18.8 5.3 33 16-48 67-99 (113)
46 2dkp_A Pleckstrin homology dom 22.1 1.7E+02 0.0058 19.0 5.1 32 16-47 85-116 (128)
47 2i5f_A Pleckstrin; PH domain, 21.9 1.5E+02 0.0053 18.5 5.0 34 14-47 73-106 (109)
48 2d9y_A Pleckstrin homology dom 20.5 1.7E+02 0.0056 18.6 4.7 31 17-47 76-106 (117)
No 1
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=100.00 E-value=3.1e-34 Score=224.23 Aligned_cols=189 Identities=22% Similarity=0.313 Sum_probs=146.5
Q ss_pred CceeEEEeCCeE-EEE--EEeCChHHHHHHHHHHHHHhhccCCCcEEEEeeeeecCCC-----CCC--CCeeEEEeeeCC
Q 048832 15 HDEYTVHFYDDV-VFT--QVTRSPSVVDDWISEIERIHRRRLHCLIVGLDVEWRPSFS-----RQQ--NPVATLQLCVGR 84 (211)
Q Consensus 15 ~~~~~v~~~~~~-i~~--~~~~~~~~l~~~i~~l~~~~~~~~~~~~v~~d~e~~~~~~-----~~~--~~~~llql~~~~ 84 (211)
++.+..+..++. +.+ +.+.+.+++..+++.+...... ....+||||+||.+.+. ... +++++||||+++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~v~~~~~l~~~~~~~~~~~~~-~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~ 82 (206)
T 1vk0_A 4 FDGPKFKMTDGSYVQTKTIDVGSSTDISPYLSLIREDSIL-NGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRN 82 (206)
T ss_dssp CCSCEEECTTSCEEEEEEEECCSSCCCHHHHHHHHHHHHH-HSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSS
T ss_pred CCCCcccccCCccceeeEEEEecHHHHHHHHHHHHHhhhh-cCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCC
Confidence 344455555543 222 2233344466666554221100 13679999999997541 112 589999999999
Q ss_pred eeEEEeccccCcchHH---HHHhhcCCCceEEEeeeHHHHHHHHHhcCCCCCcEeecHHHHHhhccccccccccHHHHHH
Q 048832 85 RCLIFQIIHARRIPQS---LANFLSDEDYTFVGVGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLEIEGLRFAGLKALSW 161 (211)
Q Consensus 85 ~~~i~~~~~~~~~~~~---L~~~L~~~~i~kvg~~~k~d~~~L~~~~gi~~~~~~D~~~la~~~l~~~~~~~~~L~~l~~ 161 (211)
+|++|++. +.++.. |.++|+|++|+||||++++|+..|.+.+|+.+.++||++.+|+..++.+.....||+.|++
T Consensus 83 ~~~l~~l~--~~~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~ 160 (206)
T 1vk0_A 83 LCLFLRLP--KPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAH 160 (206)
T ss_dssp EEEEEECC--SSCCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHH
T ss_pred CeEEEecc--ccCCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHH
Confidence 99999992 344444 8899999999999999999999998899999999999987886677766456899999999
Q ss_pred HHcCccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 162 EVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 162 ~~L~~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
++||.++ |++++++|||++ ||+++|+.|||.||+++++||++|.+
T Consensus 161 ~~lg~~l-K~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 161 RVLWSDL-GQLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHCCCC-HHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcC-CCCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999 766678999999 99999999999999999999999975
No 2
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.97 E-value=7.4e-30 Score=200.36 Aligned_cols=184 Identities=28% Similarity=0.407 Sum_probs=149.6
Q ss_pred eeEEEeCCeEEEEEEeCChHHHHHHHHHHHHHhhccCCCcEEEEeeeeecCCC-CCCCCeeEEEeeeC-CeeEEEecccc
Q 048832 17 EYTVHFYDDVVFTQVTRSPSVVDDWISEIERIHRRRLHCLIVGLDVEWRPSFS-RQQNPVATLQLCVG-RRCLIFQIIHA 94 (211)
Q Consensus 17 ~~~v~~~~~~i~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~v~~d~e~~~~~~-~~~~~~~llql~~~-~~~~i~~~~~~ 94 (211)
...+.|+|. | .++++++++..+.+.+..... ...++|+|+||.+.+. +..++++++|+|++ +.+++||+.+.
T Consensus 8 lp~~~f~g~-i--~~i~~~~~~~~~~~~~~~~l~---~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~ 81 (208)
T 2e6m_A 8 LPFLEFPGS-I--VYSYEASDCSFLSEDISMRLS---DGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSM 81 (208)
T ss_dssp CCBCCCCSE-E--EEECSHHHHHHHHHHHHHHCC---TTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGC
T ss_pred CCccccCCc-E--EEEeCHHHHHHHHHHHHHHhc---cCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECccc
Confidence 444566665 3 478888888865544433221 3578999999987521 33678999999985 47999999876
Q ss_pred CcchHHHHHhhcCCCceEEEeeeHHHHHHHHHhcCCCCCcEeecHHHHHhhccccccccccHHHHHHHHcCccCCCCCCc
Q 048832 95 RRIPQSLANFLSDEDYTFVGVGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNI 174 (211)
Q Consensus 95 ~~~~~~L~~~L~~~~i~kvg~~~k~d~~~L~~~~gi~~~~~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~l~k~~~~ 174 (211)
..+++.|+++|+|+++.|||||+|.|++.|.+.+|+.+.|.||++++|+ |+++| ..++||++|++++|+..+.|+++.
T Consensus 82 ~~~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAa-yll~~-~~~~~L~~L~~~~l~~~~~K~k~~ 159 (208)
T 2e6m_A 82 SVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVAN-EKLKC-AETWSLNGLVKHVLGKQLLKDKSI 159 (208)
T ss_dssp SSCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHH-HHTTC-CCCCCHHHHHHHHHSCBCCCCHHH
T ss_pred ccchHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHH-HHccC-CCChhHHHHHHHHcCCCcCCCCCe
Confidence 6678899999999999999999999999997669999999999557886 77777 358999999999999888776556
Q ss_pred cccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 175 TLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 175 ~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
+++||+.+||+.+|+.|||.||+++++|++.|.+
T Consensus 160 ~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~ 193 (208)
T 2e6m_A 160 RCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGN 193 (208)
T ss_dssp HTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999875
No 3
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.96 E-value=5.4e-28 Score=207.33 Aligned_cols=167 Identities=20% Similarity=0.185 Sum_probs=145.9
Q ss_pred EEEEeCChHHHHHHHHHHHHHhhccCCCcEEEEeeeeecCCCCCCCCeeEEEeeeCCeeEEEeccccCcchHHHHHhhcC
Q 048832 28 FTQVTRSPSVVDDWISEIERIHRRRLHCLIVGLDVEWRPSFSRQQNPVATLQLCVGRRCLIFQIIHARRIPQSLANFLSD 107 (211)
Q Consensus 28 ~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~v~~d~e~~~~~~~~~~~~~llql~~~~~~~i~~~~~~~~~~~~L~~~L~~ 107 (211)
.++++++++++.+|++.+. ....+|+|+||.+.. ...+++++||||+++++++|++...+.....|+++|+|
T Consensus 109 ~y~~I~t~e~L~~~l~~L~-------~~~~vavDtE~~~~~-~~~~~l~lIQLa~~~~~~lidpl~l~~~l~~L~~lL~d 180 (428)
T 3saf_A 109 PCHFISSLDELVELNEKLL-------NCQEFAVNLEHHSYR-SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTD 180 (428)
T ss_dssp CEEEECSHHHHHHHHHHHT-------TCSEEEEEEEEECTT-CSSCEEEEEEEECSSCEEEEETTTTGGGGGGGHHHHTC
T ss_pred CcEEECCHHHHHHHHHHHh-------cCCeEEEEEEecCCC-CCCCeEEEEEEEeCCcEEEEEeccchhhHHHHHHHHcC
Confidence 3458889999999999886 378999999997654 56788999999998888999986654456789999999
Q ss_pred CCceEEEeeeHHHHHHHHHhcCCCCCcEeecHHHHHhhccccccccccHHHHHHHHcCccCCCCCCccccCCCCCCCCHH
Q 048832 108 EDYTFVGVGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLTPA 187 (211)
Q Consensus 108 ~~i~kvg~~~k~d~~~L~~~~gi~~~~~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~l~k~~~~~~s~W~~~~L~~~ 187 (211)
+++.||||++++|++.|.+.+|+.+.++||+ ++|+ |+++++ .+||+.|++++||..++|+++ .++|+.+||+.+
T Consensus 181 p~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT-~lAa-~lL~~~--~~gL~~Lv~~~Lg~~l~K~~~--~sdW~~rpLs~~ 254 (428)
T 3saf_A 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDT-HQAA-RLLNLG--RHSLDHLLKLYCNVDSNKQYQ--LADWRIRPLPEE 254 (428)
T ss_dssp TTSEEEESSCHHHHHHHHHHHCCCCSSEEEH-HHHH-HHTTCS--CCSHHHHHHHHHCCCCCCTTT--TSCTTCSSCCHH
T ss_pred CCceEEEeehHHHHHHHHHHcCCCcCceeec-hhHH-HHhCCC--CCCHHHHHHHHcCCCCCcccc--ccccccCCCCHH
Confidence 9999999999999999976899999999999 6885 666664 589999999999999988764 889999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhc
Q 048832 188 QVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 188 q~~yAa~da~~~~~L~~~L~~ 208 (211)
|+.|||.||+++++|++.|.+
T Consensus 255 q~~YAA~DA~~ll~L~~~L~~ 275 (428)
T 3saf_A 255 MLSYARDDTHYLLYIYDKMRL 275 (428)
T ss_dssp HHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998864
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.94 E-value=1.9e-25 Score=191.33 Aligned_cols=173 Identities=17% Similarity=0.143 Sum_probs=142.9
Q ss_pred EEeCCeEEEEEEeCChHHHHHHHHHHHHHhhccCCCcEEEEeeeeecCCCCCCCCeeEEEeeeCCeeEEEeccccCcchH
Q 048832 20 VHFYDDVVFTQVTRSPSVVDDWISEIERIHRRRLHCLIVGLDVEWRPSFSRQQNPVATLQLCVGRRCLIFQIIHARRIPQ 99 (211)
Q Consensus 20 v~~~~~~i~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~v~~d~e~~~~~~~~~~~~~llql~~~~~~~i~~~~~~~~~~~ 99 (211)
.++.+..+. ++++.+++.+|++.+. ....+|+|+||.+.. ...++++++|||+++.+|++|........+
T Consensus 80 ~~~~~~~~~--~I~t~~~L~~~~~~L~-------~~~~vavDtE~~~~~-~~~~~l~liQla~~~~~ylid~l~l~~~l~ 149 (410)
T 2hbj_A 80 KSWDDSVPI--WVDTSTELESMLEDLK-------NTKEIAVDLEHHDYR-SYYGIVCLMQISTRERDYLVDTLKLRENLH 149 (410)
T ss_dssp CCGGGCCCE--EECSHHHHHHHHHHHT-------TCSEEEEEEEEECSS-SSSCEEEEEEEECSSCEEEEETTTTTTTGG
T ss_pred CCcCCCCcE--EeCCHHHHHHHHHHHh-------hCCceEEEeeecCCc-CCCCcEEEEEEEECCcEEEEechhhhhhHH
Confidence 344444333 5666788999998765 367899999998642 346789999999977889998643333456
Q ss_pred HHHHhhcCCCceEEEeeeHHHHHHHHHhcCCCCCcEeecHHHHHhhccccccccccHHHHHHHHcCccCCCCCCccccCC
Q 048832 100 SLANFLSDEDYTFVGVGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNITLSAW 179 (211)
Q Consensus 100 ~L~~~L~~~~i~kvg~~~k~d~~~L~~~~gi~~~~~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~l~k~~~~~~s~W 179 (211)
.|+++|+|+++.||||++|.|+..|.+.+|+.+.+.||+ ++|+ |+++++ ++||+.|++++||..+.|+.+ .++|
T Consensus 150 ~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt-~lAa-~LL~~~--~~~L~~L~~~~lg~~l~K~~~--~sdW 223 (410)
T 2hbj_A 150 ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDT-YHAS-KAIGLP--RHSLAYLLENFANFKTSKKYQ--LADW 223 (410)
T ss_dssp GGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEH-HHHH-HHHTCS--CCSHHHHHHHHSCCCCCCTTT--TSCT
T ss_pred HHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCCEEEc-HHHH-HHhCCC--ccCHHHHHHHHcCCCCCcccc--ccCC
Confidence 799999999999999999999999976799999999999 5785 776665 799999999999998887654 7899
Q ss_pred CCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 180 DTRVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 180 ~~~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
..|||+++|+.|||.||+++++|++.|.+
T Consensus 224 ~~rpL~~~q~~YAa~Da~~ll~L~~~L~~ 252 (410)
T 2hbj_A 224 RIRPLSKPMTAAARADTHFLLNIYDQLRN 252 (410)
T ss_dssp TCSSCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998864
No 5
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.93 E-value=7.9e-25 Score=185.92 Aligned_cols=164 Identities=17% Similarity=0.149 Sum_probs=139.5
Q ss_pred EeCChHHHHHHHHHHHHHhhccCCCcEEEEeeeeecCCCCCCCCeeEEEeeeCCeeEEEeccccCcchHHHHHhhcCCCc
Q 048832 31 VTRSPSVVDDWISEIERIHRRRLHCLIVGLDVEWRPSFSRQQNPVATLQLCVGRRCLIFQIIHARRIPQSLANFLSDEDY 110 (211)
Q Consensus 31 ~~~~~~~l~~~i~~l~~~~~~~~~~~~v~~d~e~~~~~~~~~~~~~llql~~~~~~~i~~~~~~~~~~~~L~~~L~~~~i 110 (211)
++++++++.+|++.+. ..+.+|+|+||.+.. ...++++++|+|+++.+|++|..... ..+.|+++|+|+++
T Consensus 5 ~I~t~~~l~~~~~~l~-------~~~~va~D~E~~~~~-~~~~~l~liqla~~~~~~lid~~~l~-~~~~L~~ll~d~~i 75 (375)
T 1yt3_A 5 MITTDDALASLCEAVR-------AFPAIALDTEFVRTR-TYYPQLGLIQLFDGEHLALIDPLGIT-DWSPLKAILRDPSI 75 (375)
T ss_dssp EECSHHHHHHHHHHHT-------TSSEEEEEEEEECCS-CSSCEEEEEEEECSSCEEEECGGGCS-CCHHHHHHHHCTTS
T ss_pred EeCCHHHHHHHHHHHc-------CCCeEEEEeeecCCC-cCCCceEEEEEecCCcEEEEeCCCCC-ChHHHHHHHcCCCc
Confidence 4566788999998765 368899999998753 34578999999997788998864332 45789999999999
Q ss_pred eEEEeeeHHHHHHHHHhcCCCCCcEeecHHHHHhhccccccccccHHHHHHHHcCccCCCCCCccccCCCCCCCCHHHHH
Q 048832 111 TFVGVGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVL 190 (211)
Q Consensus 111 ~kvg~~~k~d~~~L~~~~gi~~~~~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~l~k~~~~~~s~W~~~~L~~~q~~ 190 (211)
.|||||+|+|++.|.+.+|+.+.+.||+ ++|+ |++++. .++||++|++++||..+.|+++ .++|..+||+++|+.
T Consensus 76 ~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt-~lAa-~lL~~~-~~~~L~~L~~~~l~~~l~K~~~--~sdw~~rpL~~~q~~ 150 (375)
T 1yt3_A 76 TKFLHAGSEDLEVFLNVFGELPQPLIDT-QILA-AFCGRP-MSWGFASMVEEYSGVTLDKSES--RTDWLARPLTERQCE 150 (375)
T ss_dssp EEEESSCHHHHHHHHHHHSSCCSSEEEH-HHHH-HHTTCC-TTCCHHHHHHHHHCCCCCCTTT--TSCTTSSSCCHHHHH
T ss_pred eEEEeeHHHHHHHHHHHcCCCCCcEEEc-HHHH-HHcCCC-CChhHHHHHHHHcCCCCCCCcc--cCCCCCCCCCHHHHH
Confidence 9999999999999976699999989999 5785 777773 5899999999999999888765 789999999999999
Q ss_pred HHHHhHHHHHHHHHHHhc
Q 048832 191 YACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 191 yAa~da~~~~~L~~~L~~ 208 (211)
|||.||++++.|++.|.+
T Consensus 151 YAa~Da~~l~~L~~~L~~ 168 (375)
T 1yt3_A 151 YAAADVWYLLPITAKLMV 168 (375)
T ss_dssp HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998864
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.87 E-value=2.9e-21 Score=166.69 Aligned_cols=161 Identities=19% Similarity=0.171 Sum_probs=133.2
Q ss_pred EeCChHHHHHHHHHHHHHhhccCCC-cEEEEeeeeecCCCCCCCCeeEEEeeeCC-eeEEEeccccC---cchHHHHHhh
Q 048832 31 VTRSPSVVDDWISEIERIHRRRLHC-LIVGLDVEWRPSFSRQQNPVATLQLCVGR-RCLIFQIIHAR---RIPQSLANFL 105 (211)
Q Consensus 31 ~~~~~~~l~~~i~~l~~~~~~~~~~-~~v~~d~e~~~~~~~~~~~~~llql~~~~-~~~i~~~~~~~---~~~~~L~~~L 105 (211)
++++.+++.+|++.+. .. +.+|+|+||.... ...++++++|||+.+ .+++|+..... ...+.|+++|
T Consensus 20 ~I~t~e~L~~~~~~L~-------~~~~~vavDtE~~~~~-~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l~~L~~lL 91 (440)
T 3cym_A 20 VIDTLPAFRDYCSELA-------SSHGSLAADAERASGF-RYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAV 91 (440)
T ss_dssp EECSHHHHHHHHHHHH-------SCEEEEEEEEEECTTT-SSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHHHHH
T ss_pred eeCCHHHHHHHHHHHH-------hcCCeEEEEeeecCCC-CCCCCEEEEEEEECCCcEEEEEcCCccccccCHHHHHHHH
Confidence 4556788999998865 24 7899999997653 336789999999854 58888763211 1256899999
Q ss_pred cCCCceEEEeeeHHHHHHHHHhcCCCCCcEeecHHHHHhhccccccccccHHHHHHHHcCccCCCCCCccccCCCCCCCC
Q 048832 106 SDEDYTFVGVGIDGDVKKLENNYGLQVFRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLT 185 (211)
Q Consensus 106 ~~~~i~kvg~~~k~d~~~L~~~~gi~~~~~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~l~k~~~~~~s~W~~~~L~ 185 (211)
+|+ .||+|++++|+..|. .+|+.+.+.||+ ++|+ |+++++ ++||+.|++.++|..+.|+.+ .++|..+||+
T Consensus 92 ~d~--~KV~h~~k~Dl~~L~-~~gi~~~~~fDt-~lAa-~lL~~~--~~gL~~L~~~~lg~~~~K~~~--~sdw~~rpLs 162 (440)
T 3cym_A 92 GDA--VWILHDSLQDLPGFD-ELGMEPQRLFDT-EIAA-RLLGLK--RFGLAAVTEHFLGLTLAKEHS--AADWSYRPLP 162 (440)
T ss_dssp TTC--EEEESSHHHHHHHHH-HHTCCCCEEEEH-HHHH-HHTTCS--SCSHHHHHHHHHCEECCCCCT--TCCTTCSSCC
T ss_pred CCC--CEEEEcCHHHHHHHH-HcCCcCCceehH-HHHH-HHhCCC--CCCHHHHHHHHhCCCcccccc--cCCCcCCCCC
Confidence 997 699999999999995 899999988999 6885 777774 899999999999998888754 7899999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhc
Q 048832 186 PAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 186 ~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
++|+.|||.||+++++|++.|.+
T Consensus 163 ~~q~~YAa~Da~~Ll~L~~~L~~ 185 (440)
T 3cym_A 163 RDWRNYAALDVELLIELETKMRA 185 (440)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.77 E-value=9.2e-18 Score=150.32 Aligned_cols=164 Identities=18% Similarity=0.215 Sum_probs=129.2
Q ss_pred EeCChHHHHHHHHHHHHHhhccCCCcEEEEeeeeecCCCCCCCCeeEEEeee-CCeeEEEecccc----------CcchH
Q 048832 31 VTRSPSVVDDWISEIERIHRRRLHCLIVGLDVEWRPSFSRQQNPVATLQLCV-GRRCLIFQIIHA----------RRIPQ 99 (211)
Q Consensus 31 ~~~~~~~l~~~i~~l~~~~~~~~~~~~v~~d~e~~~~~~~~~~~~~llql~~-~~~~~i~~~~~~----------~~~~~ 99 (211)
++++++++.+|++.+. ....++||+|+++.. ...+++..+|++. .+.++++++.+. ..+.+
T Consensus 9 ~I~~~~~l~~~~~~l~-------~~~~va~DtEttgl~-~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~ 80 (605)
T 2kfn_A 9 TILDEETLKAWIAKLE-------KAPVFAFDTETDSLD-NISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALE 80 (605)
T ss_dssp ECCSHHHHHHHHHHHH-------TSSSEEEEEEESCSC-TTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHH
T ss_pred EecCHHHHHHHHHhcc-------cCCeEEEEEecCCCC-cccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHH
Confidence 3455788999998765 357799999998764 3457888899997 445666666541 12235
Q ss_pred HHHHhhcCCCceEEEeeeHHHHHHHHHhcCCCCCc-EeecHHHHHhhccccccccccHHHHHHHHcCccCC-------CC
Q 048832 100 SLANFLSDEDYTFVGVGIDGDVKKLENNYGLQVFR-TVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVN-------KP 171 (211)
Q Consensus 100 ~L~~~L~~~~i~kvg~~~k~d~~~L~~~~gi~~~~-~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~l~-------k~ 171 (211)
.|+++|+++++.||+||+|+|+..|. .+|+.+.+ .+|+ ++++ |+++|+..+++|+++++++|+.... |+
T Consensus 81 ~L~~~L~d~~i~kV~hnak~D~~~L~-~~Gi~l~~~~~DT-~laa-yLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg 157 (605)
T 2kfn_A 81 LLKPLLEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDT-MLES-YILNSVAGRHDMDSLAERWLKHKTITFEEIAGKG 157 (605)
T ss_dssp HHHHHHTCTTSCEEESSHHHHHHHHH-TTTCCCCCEEEEH-HHHH-HHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSS
T ss_pred HHHHHHcCCCCeEEEECcHHHHHHHH-HCCCCCCCccccH-HHHH-HHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCC
Confidence 79999999999999999999999995 68999988 5899 6885 8888977789999999999886542 33
Q ss_pred CCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 172 RNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 172 ~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
++ .++|...++ +++..||+.||.++++|+..|.+
T Consensus 158 ~~--~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~ 191 (605)
T 2kfn_A 158 KN--QLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWP 191 (605)
T ss_dssp TT--CCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc--cCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 457877777 67999999999999999998864
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.73 E-value=3.1e-17 Score=145.94 Aligned_cols=146 Identities=15% Similarity=0.043 Sum_probs=118.7
Q ss_pred cEEEEeeeeecCCCCCCCCeeEEEeeeCCeeEEEeccccCcchHHHHHhhcCCCceEEEeeeHHHHHHHHHhcCCCCCcE
Q 048832 56 LIVGLDVEWRPSFSRQQNPVATLQLCVGRRCLIFQIIHARRIPQSLANFLSDEDYTFVGVGIDGDVKKLENNYGLQVFRT 135 (211)
Q Consensus 56 ~~v~~d~e~~~~~~~~~~~~~llql~~~~~~~i~~~~~~~~~~~~L~~~L~~~~i~kvg~~~k~d~~~L~~~~gi~~~~~ 135 (211)
...++|+|..... ....++.++|+|.+++++++++.+. ...+.|+++|+|+++.||+||+|+|++.|. ++|+.+.++
T Consensus 30 ~~~aldtE~~~~~-~~~a~Lvgisla~~~~a~yIp~~~~-~~l~~Lk~lLed~~i~KV~hn~K~Dl~vL~-~~Gi~l~g~ 106 (592)
T 3pv8_A 30 DKAALVVEVVEEN-YHDAPIVGIAVVNEHGRFFLRPETA-LADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGV 106 (592)
T ss_dssp SEEEEEEECCSSS-CTTCCCCEEEEEETTEEEEECHHHH-TTCHHHHHHHTCTTSEEEESSHHHHHHHHH-HTTCCCCCE
T ss_pred cCcEEEEEEcCCc-cCcccEEEEEEEcCCceEEEccchh-hHHHHHHHHHhCCCCeEEEechHHHHHHHH-HcCCCCCCc
Confidence 4568999987654 5567888899999888888887542 355789999999999999999999999995 789999874
Q ss_pred -eecHHHHHhhccccccccccHHHHHHHHcCccCCCCCCccccCCCC---CCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 136 -VDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNITLSAWDT---RVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 136 -~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~l~k~~~~~~s~W~~---~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
||+ ++|+ |+++|+.++++|++|++++|+..+.+.++ ..+|.+ .+..+.+.+|||.||.++++|++.|.+
T Consensus 107 ~fDT-mLAA-YLL~p~~~~~~L~~La~~yLg~~l~~~ee--~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~ 179 (592)
T 3pv8_A 107 SFDL-LLAA-YLLDPAQGVDDVAAAAKMKQYEAVRPDEA--VYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLD 179 (592)
T ss_dssp EEEH-HHHH-HHHCGGGCCCSHHHHHGGGTCCSSCCHHH--HHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchH-HHHH-HHcCCCCCCCCHHHHHHHHcCCCCchHHH--hcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899 7885 99999877899999999999988876543 234432 344567899999999999999988753
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.50 E-value=2.9e-14 Score=129.56 Aligned_cols=146 Identities=11% Similarity=0.037 Sum_probs=113.4
Q ss_pred EEEEeeeeecCCCCCCCCeeEEEeeeC--CeeEEEeccccCcchHHHHHhhcCCCceEEEeee-HHHHHHHHHhc-----
Q 048832 57 IVGLDVEWRPSFSRQQNPVATLQLCVG--RRCLIFQIIHARRIPQSLANFLSDEDYTFVGVGI-DGDVKKLENNY----- 128 (211)
Q Consensus 57 ~v~~d~e~~~~~~~~~~~~~llql~~~--~~~~i~~~~~~~~~~~~L~~~L~~~~i~kvg~~~-k~d~~~L~~~~----- 128 (211)
.++||+|.++.. ....+++++|++.. +..++++....+...+.|+++|+ +.+.||+||+ ++|+..|.+.+
T Consensus 1 ~vv~D~ETtGl~-~~~d~i~~iqi~~~~~~~~~~~~p~~i~~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~ 78 (698)
T 1x9m_A 1 MIVSDIEANALL-ESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLN 78 (698)
T ss_dssp CEEEEEEESSCG-GGCCCEEEEEEEETTTTEEEEECGGGHHHHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHC
T ss_pred CEEEEcCCCCcC-CCCCEEEEEEEEecCCCcEEEEChHHHHHHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhccc
Confidence 378999998765 44678999999984 36777776544345678999999 8999999998 99999996543
Q ss_pred -CCCCC-c-EeecHHHHHhhccccccccccHHHHHHHHc-------CccC-----C-----------CCCC-ccccCCCC
Q 048832 129 -GLQVF-R-TVDLRPLAAEDLEIEGLRFAGLKALSWEVL-------EKEV-----N-----------KPRN-ITLSAWDT 181 (211)
Q Consensus 129 -gi~~~-~-~~D~~~la~~~l~~~~~~~~~L~~l~~~~L-------~~~l-----~-----------k~~~-~~~s~W~~ 181 (211)
|+.+. + .+|+ ++++ |+++|+..+++|++|++++| +..+ . |+++ ...++|..
T Consensus 79 ~Gi~l~~~~~~DT-mlaa-yLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~ 156 (698)
T 1x9m_A 79 REFHLPRENCIDT-LVLS-RLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWN 156 (698)
T ss_dssp CCCCCCGGGEEEH-HHHH-HHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTS
T ss_pred CCccCCCCcchhH-HHHH-HHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccc
Confidence 99887 5 6899 6885 88888777899999999997 4322 1 2222 11137764
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 182 RVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 182 ~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
+++++.+||+.||.++++|++.|.+
T Consensus 157 --~~~~~~~YA~~Da~~t~~L~~~L~~ 181 (698)
T 1x9m_A 157 --FNEEMMDYNVQDVVVTKALLEKLLS 181 (698)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688999999999999999999875
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=99.18 E-value=3.5e-11 Score=106.02 Aligned_cols=117 Identities=11% Similarity=-0.120 Sum_probs=94.4
Q ss_pred CcEEEEeeeeecCCCCCCCCeeEEEeeeCCeeEEEeccccCcchHHHHHhhcCCCceEEEeeeHHHHHHHHHhcCCCCCc
Q 048832 55 CLIVGLDVEWRPSFSRQQNPVATLQLCVGRRCLIFQIIHARRIPQSLANFLSDEDYTFVGVGIDGDVKKLENNYGLQVFR 134 (211)
Q Consensus 55 ~~~v~~d~e~~~~~~~~~~~~~llql~~~~~~~i~~~~~~~~~~~~L~~~L~~~~i~kvg~~~k~d~~~L~~~~gi~~~~ 134 (211)
++.+++|+|..... ....++.++|+|.++.+++++ ...+.|++||+| +.||+||+|+|++ .+|+.+..
T Consensus 10 p~~valDtE~~~~~-~~~a~Lvgi~la~~~~a~~i~-----~~l~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~~ 77 (540)
T 4dfk_A 10 PEGAFVGFVLSRKE-PMWADLLALAAARGGRVHRAP-----EPYKALRDLKEA--RGLLAKDLSVLAL----REGLGLPP 77 (540)
T ss_dssp CTTCEEEEEESSSC-TTTCCEEEEEEEETTEEEECS-----SHHHHHTTCSSB--CSTTHHHHHHHHH----HTTCCCCB
T ss_pred CCceEEEEEecCCc-cCcccEEEEEEEcCCEEEEeh-----hhHHHHHHHHcC--CCEEEeccHHHHH----HcCCCCCc
Confidence 45699999997664 566788899999877777654 356789999998 8899999999998 57888875
Q ss_pred EeecHHHHHhhccccccccccHHHHHHHHcCccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 135 TVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 135 ~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
.||+ ++++ |+++|+ +++|++|++++++. +. . +|+.||.++++|+..|.+
T Consensus 78 ~fDT-~laA-yLL~p~--~~~L~~La~~yl~~-~g-----------k---------~a~~DA~~t~~L~~~L~~ 126 (540)
T 4dfk_A 78 GDDP-MLLA-YLLDPS--NTTPEGVARRYGGE-WT-----------E---------EAGERAALSERLFANLWG 126 (540)
T ss_dssp CCCH-HHHH-HHHCTT--CCCHHHHHHHHTSC-CC-----------S---------CHHHHHHHHHHHHHHHHH
T ss_pred ceeH-HHHH-HHhCCC--CCCHHHHHHHHhhh-hc-----------c---------chHHHHHHHHHHHHHHHH
Confidence 5899 6885 898998 89999999999874 21 1 256899999999988754
No 11
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.30 E-value=1.3e-06 Score=80.56 Aligned_cols=114 Identities=11% Similarity=-0.043 Sum_probs=83.8
Q ss_pred CcEEEEeeeeecCCCCCCCCeeEEEeeeC-CeeEEEeccccCcchHHHHHhhcCCCceEEEeeeHHHHHHHHHhcCCCCC
Q 048832 55 CLIVGLDVEWRPSFSRQQNPVATLQLCVG-RRCLIFQIIHARRIPQSLANFLSDEDYTFVGVGIDGDVKKLENNYGLQVF 133 (211)
Q Consensus 55 ~~~v~~d~e~~~~~~~~~~~~~llql~~~-~~~~i~~~~~~~~~~~~L~~~L~~~~i~kvg~~~k~d~~~L~~~~gi~~~ 133 (211)
...+++|+|..+ .....++ +++|.. +.++++++ + . +.|+++|+++.+ |+|+|.+.|. .+|+.+.
T Consensus 304 ~~~va~d~et~~---~~~~~l~-vg~a~~~g~a~yvp~-~--~--~~Lk~lLed~~i-----n~K~d~~~L~-~~Gi~~~ 368 (832)
T 1bgx_T 304 GAFVGFVLSRKE---PMWADLL-ALAAARGGRVHRAPE-P--Y--KALRDLKEARGL-----LAKDLSVLAL-REGLGLP 368 (832)
T ss_dssp TCCBEEECSSSC---TTTCCCC-EEECBSSSEEECCSC-H--H--HHHHHCSSBCBT-----THHHHHHHHH-HHTCCCC
T ss_pred CceEEEEEecCC---cccCcee-EEEEEcCCCEEEEEC-C--H--HHHHHHHhCCCC-----ChHHHHHHHH-HcCCccC
Confidence 355888888654 2233431 447764 45677666 3 1 579999999987 9999999995 6999998
Q ss_pred cEeecHHHHHhhccccccccccHHHHHHHHcCccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 134 RTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 134 ~~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
..+|+ ++++ |+++|+ .++|++|++++ | | +|. ++ || .||.++++|++.|.+
T Consensus 369 ~~~Dt-~laa-yLl~p~--~~~l~~l~~~~-g----k-------~~~------~~--ya-~da~~~~~l~~~l~~ 418 (832)
T 1bgx_T 369 PGDDP-MLLA-YLLDPS--NTTPEGVARRY-G----G-------EWT------EE--AG-ERAALSERLFANLWG 418 (832)
T ss_dssp BCCCH-HHHH-HHHCTT--CCSTTHHHHHH-S----C-------CCC------SS--HH-HHHHHHHHHHHHHHH
T ss_pred cccCH-HHHH-HHcCCC--CCCHHHHHHHh-C----C-------Cch------HH--HH-HHHHHHHHHHHHHHH
Confidence 44798 7885 899997 88999999998 2 1 131 12 77 699999999998853
No 12
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.80 E-value=0.00031 Score=53.34 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=57.9
Q ss_pred hHHHHHhhcCCCceEEEeeeHHHHHHHHHhcCCCCCcEeecHHHHH--hhccccccccccHHHHHHHHcCccCCCCCCcc
Q 048832 98 PQSLANFLSDEDYTFVGVGIDGDVKKLENNYGLQVFRTVDLRPLAA--EDLEIEGLRFAGLKALSWEVLEKEVNKPRNIT 175 (211)
Q Consensus 98 ~~~L~~~L~~~~i~kvg~~~k~d~~~L~~~~gi~~~~~~D~~~la~--~~l~~~~~~~~~L~~l~~~~L~~~l~k~~~~~ 175 (211)
.+.|.+++.+ .+.||||+..|...|.+.+ .-...+|+..+.. ...+.|+..+++|+.++++++|.+...+..
T Consensus 74 ~~~~~~~l~~--~~lV~hn~~fD~~~L~~~~--~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~-- 147 (189)
T 1wlj_A 74 RLEILQLLKG--KLVVGHDLKHDFQALKEDM--SGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLL-- 147 (189)
T ss_dssp HHHHHHHHTT--SEEEESSHHHHHHHTTCCC--TTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTT--
T ss_pred HHHHHHHHCC--CEEEECCcHHHHHHHHHhC--CCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCC--
Confidence 3456777863 5789999999999885322 2224689865432 111234446899999999988876643210
Q ss_pred ccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 176 LSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 176 ~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
..+ |..||.++.+|+..+.+
T Consensus 148 ~H~-------------Al~Da~ata~l~~~l~~ 167 (189)
T 1wlj_A 148 GHS-------------SVEDARATMELYQISQR 167 (189)
T ss_dssp CCC-------------HHHHHHHHHHHHHHHHH
T ss_pred CcC-------------cHHHHHHHHHHHHHHHH
Confidence 112 77889999888877654
No 13
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=97.72 E-value=0.00027 Score=55.48 Aligned_cols=88 Identities=14% Similarity=0.027 Sum_probs=58.7
Q ss_pred HHHHHhhcC-------CCceEEEeeeHHHHHHHHH---hcCCCCC-----cEeecHHHHHhhccccccccccHHHHHHHH
Q 048832 99 QSLANFLSD-------EDYTFVGVGIDGDVKKLEN---NYGLQVF-----RTVDLRPLAAEDLEIEGLRFAGLKALSWEV 163 (211)
Q Consensus 99 ~~L~~~L~~-------~~i~kvg~~~k~d~~~L~~---~~gi~~~-----~~~D~~~la~~~l~~~~~~~~~L~~l~~~~ 163 (211)
+.+.+++.+ +...+||||++.|+..|.+ .+|+... ..+|+..++. ...| .++|+.+++++
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~--~~~p---~~~L~~l~~~~ 191 (235)
T 3v9w_A 117 HEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAG--LALG---QTVLSKACQTA 191 (235)
T ss_dssp HHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHH--HHHS---CCSHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHH--HHhC---CCCHHHHHHHc
Confidence 445555542 4678999999999999863 3587542 2579965553 3334 46899999876
Q ss_pred cCccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 164 LEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 164 L~~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
|.+.... +..+|..||.++.+|+..|.+
T Consensus 192 -gi~~~~~----------------~~H~Al~DA~~ta~l~~~l~~ 219 (235)
T 3v9w_A 192 -GMDFDST----------------QAHSALYDTERTAVLFCEIVN 219 (235)
T ss_dssp -TCCCCTT----------------TTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCCCCCC----------------CCcChHHHHHHHHHHHHHHHH
Confidence 4433211 124488899999998887754
No 14
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.49 E-value=0.0049 Score=46.42 Aligned_cols=87 Identities=20% Similarity=0.017 Sum_probs=61.2
Q ss_pred HHHHHhhcCCCceEEEeeeHHHHHHHHH---hcCCCC-C-cEeecHHHHHhhccccccccccHHHHHHHHcCccCCCCCC
Q 048832 99 QSLANFLSDEDYTFVGVGIDGDVKKLEN---NYGLQV-F-RTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKPRN 173 (211)
Q Consensus 99 ~~L~~~L~~~~i~kvg~~~k~d~~~L~~---~~gi~~-~-~~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~l~k~~~ 173 (211)
+.|..++.+ .+.||||...|+..|.+ .+|+.. . ..+|+..++.... +..+++|+++++. +|.+...
T Consensus 84 ~~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~---~~~~~~L~~l~~~-~gi~~~~--- 154 (186)
T 2p1j_A 84 PEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL---KLRSYSLDSVVEK-LGLGPFR--- 154 (186)
T ss_dssp HHHHHHSSS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT---CCSCCSHHHHHHH-TTCCSTT---
T ss_pred HHHHHHHCC--CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh---hcCCCCHHHHHHH-cCCCCCC---
Confidence 456667764 47899999999998863 356654 2 3689976664333 3358999999986 4654321
Q ss_pred ccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhcC
Q 048832 174 ITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNAN 209 (211)
Q Consensus 174 ~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~~ 209 (211)
...|..||.++.+|+..|.+.
T Consensus 155 ---------------~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 155 ---------------HHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------CcCHHHHHHHHHHHHHHHHHH
Confidence 134889999999999888764
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=97.32 E-value=0.0011 Score=52.40 Aligned_cols=91 Identities=13% Similarity=-0.011 Sum_probs=60.1
Q ss_pred HHHHHhhcC--CCceEEEeee-HHHHHHHHH---hcCCCC--Cc--EeecHHHHHhhcc--c----cccccccHHHHHHH
Q 048832 99 QSLANFLSD--EDYTFVGVGI-DGDVKKLEN---NYGLQV--FR--TVDLRPLAAEDLE--I----EGLRFAGLKALSWE 162 (211)
Q Consensus 99 ~~L~~~L~~--~~i~kvg~~~-k~d~~~L~~---~~gi~~--~~--~~D~~~la~~~l~--~----~~~~~~~L~~l~~~ 162 (211)
+.|..|+.+ +....|+||. ..|...|.+ ++|+.. .+ .+|+..++..... . |...+++|++++++
T Consensus 106 ~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~ 185 (242)
T 3mxm_B 106 ILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTR 185 (242)
T ss_dssp HHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHH
Confidence 355667765 2257899995 999988864 457764 33 4799776642221 1 23468999999999
Q ss_pred HcCccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHh
Q 048832 163 VLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLN 207 (211)
Q Consensus 163 ~L~~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~ 207 (211)
++|++.... ++ |..||.++.+|+..+.
T Consensus 186 ~~gi~~~~~-----H~-------------Al~Da~ata~l~~~~~ 212 (242)
T 3mxm_B 186 LYWQAPTDS-----HT-------------AEGDDLTLLSICQWKP 212 (242)
T ss_dssp HHSSCCSST-----TS-------------HHHHHHHHHHHHTSSH
T ss_pred HhCCCCCCC-----cC-------------hHHHHHHHHHHHHHHH
Confidence 888765321 22 7788999888876554
No 16
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=96.40 E-value=0.01 Score=46.27 Aligned_cols=92 Identities=21% Similarity=0.070 Sum_probs=60.2
Q ss_pred HHHHHhhcCC--CceEEEeee-HHHHHHHHH---hcCCCCC---cEeecHHHHHhhcc-------ccccccccHHHHHHH
Q 048832 99 QSLANFLSDE--DYTFVGVGI-DGDVKKLEN---NYGLQVF---RTVDLRPLAAEDLE-------IEGLRFAGLKALSWE 162 (211)
Q Consensus 99 ~~L~~~L~~~--~i~kvg~~~-k~d~~~L~~---~~gi~~~---~~~D~~~la~~~l~-------~~~~~~~~L~~l~~~ 162 (211)
+.|..|+..- ..+.|+||. ..|...|.+ ++|+... ..+|+..++..+.. .|+..+++|..++++
T Consensus 101 ~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~ 180 (238)
T 1y97_A 101 RTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHR 180 (238)
T ss_dssp HHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHH
Confidence 4577788762 267899999 999988863 4577654 25898666643321 044468999999998
Q ss_pred HcCccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 163 VLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 163 ~L~~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
++|.+... ...|..||.++.+++..+.+
T Consensus 181 ~~gi~~~~------------------~H~Al~Da~~ta~l~~~l~~ 208 (238)
T 1y97_A 181 YFRAEPSA------------------AHSAEGDVHTLLLIFLHRAA 208 (238)
T ss_dssp HHSSCCC---------------------CHHHHHHHHHHHHHHTHH
T ss_pred HhCCCCcc------------------CccHHHHHHHHHHHHHHHHH
Confidence 77754321 13378899999888877653
No 17
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=95.66 E-value=0.1 Score=39.19 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=59.6
Q ss_pred HHHHHhhcCCCceEEEeeeHHHHHHHHH---hcCCCC------CcEeecHHHHHhhccccccccccHHHHHHHHcCccCC
Q 048832 99 QSLANFLSDEDYTFVGVGIDGDVKKLEN---NYGLQV------FRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVN 169 (211)
Q Consensus 99 ~~L~~~L~~~~i~kvg~~~k~d~~~L~~---~~gi~~------~~~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~l~ 169 (211)
+.+..++.+ -..||||...|...|.+ .+|+.. ...+|+..++...+ |+ ..++|+.+++. +|.+..
T Consensus 87 ~~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~--p~-~~~~L~~l~~~-~gi~~~ 160 (194)
T 2gui_A 87 DEFMDYIRG--AELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMF--PG-KRNSLDALCAR-YEIDNS 160 (194)
T ss_dssp HHHHHHHTT--SEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHS--TT-SCCSHHHHHHH-TTCCCT
T ss_pred HHHHHHHCC--CeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHc--CC-CCCCHHHHHHH-cCcCCC
Confidence 356677764 35789999999998863 357762 24689876664333 44 35799999986 465442
Q ss_pred CCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhcC
Q 048832 170 KPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNAN 209 (211)
Q Consensus 170 k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~~ 209 (211)
... .++ |..||.++.+|+..|.+.
T Consensus 161 ~~~---~H~-------------Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 161 KRT---LHG-------------ALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp TCS---SCC-------------HHHHHHHHHHHHHHHTC-
T ss_pred CCC---CCC-------------hHHHHHHHHHHHHHHHhc
Confidence 110 122 788999999999888653
No 18
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=95.49 E-value=0.045 Score=44.79 Aligned_cols=92 Identities=12% Similarity=-0.028 Sum_probs=60.2
Q ss_pred HHHHHhhcC--CCceEEEee-eHHHHHHHHH---hcCCCCC--c--EeecHHHHHhh--ccccc----cccccHHHHHHH
Q 048832 99 QSLANFLSD--EDYTFVGVG-IDGDVKKLEN---NYGLQVF--R--TVDLRPLAAED--LEIEG----LRFAGLKALSWE 162 (211)
Q Consensus 99 ~~L~~~L~~--~~i~kvg~~-~k~d~~~L~~---~~gi~~~--~--~~D~~~la~~~--l~~~~----~~~~~L~~l~~~ 162 (211)
+.|.+|+.+ +....|+|| +..|...|.+ ++|+... + .+|+..++... -..|+ ..+++|++++++
T Consensus 106 ~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~ 185 (314)
T 3u3y_B 106 ILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTR 185 (314)
T ss_dssp HHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHH
Confidence 345667776 236789999 8999998864 4576652 2 57886544211 11232 258999999999
Q ss_pred HcCccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 163 VLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 163 ~L~~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
++|++... .++ |..||.++.+|+..+.+
T Consensus 186 l~gi~~~~-----aHr-------------Al~DA~ata~lf~~l~~ 213 (314)
T 3u3y_B 186 LYWQAPTD-----SHT-------------AEGHVLTLLSICQWKPQ 213 (314)
T ss_dssp HHSSCCSC-----SSS-------------HHHHHHHHHHHHHSSHH
T ss_pred hcCCCCCC-----CCC-------------HHHHHHHHHHHHHHHHH
Confidence 88876532 222 77899999888876543
No 19
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=95.44 E-value=0.066 Score=40.51 Aligned_cols=92 Identities=9% Similarity=-0.043 Sum_probs=60.6
Q ss_pred HHHHHhhcCC-----CceEEEeeeHHHHH-HHHH---hcCCCCC----cEeecHHHHHhhccccccccccHHHHHHHHcC
Q 048832 99 QSLANFLSDE-----DYTFVGVGIDGDVK-KLEN---NYGLQVF----RTVDLRPLAAEDLEIEGLRFAGLKALSWEVLE 165 (211)
Q Consensus 99 ~~L~~~L~~~-----~i~kvg~~~k~d~~-~L~~---~~gi~~~----~~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~ 165 (211)
+.+..|+.+. ....|+||...|.. .|.+ .+|+... ..+|+..++..+++.+ ..+++|+.+++. +|
T Consensus 90 ~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~-~~~~~L~~l~~~-~g 167 (204)
T 1w0h_A 90 KKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVP-RSQTKLTIMLEK-LG 167 (204)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCC-GGGCSHHHHHHH-TT
T ss_pred HHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCC-CccchHHHHHHH-cC
Confidence 3455566643 23579999999986 7753 4577654 3589977775444332 236899999987 46
Q ss_pred ccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhcC
Q 048832 166 KEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNAN 209 (211)
Q Consensus 166 ~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~~ 209 (211)
.+.... .++ |..||.++.+|+..|.+.
T Consensus 168 i~~~~~----~H~-------------Al~Da~~ta~l~~~l~~~ 194 (204)
T 1w0h_A 168 MDYDGR----PHC-------------GLDDSKNIARIAVRMLQD 194 (204)
T ss_dssp CCCCSC----TTC-------------HHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC----ccC-------------cHHHHHHHHHHHHHHHHC
Confidence 544210 122 788999999998888764
No 20
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=95.12 E-value=0.36 Score=41.77 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=55.9
Q ss_pred HHHHhhcCCCceEEEee-eHHHHHHHHH---hcCCCC--------CcEeecHHHHHhhcc-c------c----ccccccH
Q 048832 100 SLANFLSDEDYTFVGVG-IDGDVKKLEN---NYGLQV--------FRTVDLRPLAAEDLE-I------E----GLRFAGL 156 (211)
Q Consensus 100 ~L~~~L~~~~i~kvg~~-~k~d~~~L~~---~~gi~~--------~~~~D~~~la~~~l~-~------~----~~~~~~L 156 (211)
.+..++..+..+.|||| +..|...|.+ ++|+.. ...+|+..++..+.. . | +..+++|
T Consensus 87 ~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL 166 (482)
T 2qxf_A 87 RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRL 166 (482)
T ss_dssp HHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCH
T ss_pred HHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCH
Confidence 45667775567889999 8999988753 345542 124788666643221 1 2 3457899
Q ss_pred HHHHHHHcCccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 157 KALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 157 ~~l~~~~L~~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
+.+++.+ |.+... . .-|..||.++..|+..+.+
T Consensus 167 ~~L~~~~-Gi~~~~-----a-------------HrAL~DA~aTa~l~~~l~~ 199 (482)
T 2qxf_A 167 EHLTKAN-GIEHSN-----A-------------HDAMADVYATIAMAKLVKT 199 (482)
T ss_dssp HHHHHHT-TCCCC---------------------CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCCCC-----C-------------CCHHHHHHHHHHHHHHHHH
Confidence 9998764 654321 1 2266788888888776643
No 21
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=94.21 E-value=0.27 Score=39.71 Aligned_cols=92 Identities=9% Similarity=-0.040 Sum_probs=60.4
Q ss_pred HHHHHhhcCC-----CceEEEeeeHHHHH-HHHH---hcCCCCC----cEeecHHHHHhhccccccccccHHHHHHHHcC
Q 048832 99 QSLANFLSDE-----DYTFVGVGIDGDVK-KLEN---NYGLQVF----RTVDLRPLAAEDLEIEGLRFAGLKALSWEVLE 165 (211)
Q Consensus 99 ~~L~~~L~~~-----~i~kvg~~~k~d~~-~L~~---~~gi~~~----~~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~ 165 (211)
..|..|+.+. ....|+||...|.. .|.+ .+|+... ..+|+..+...+.+.+. ..++|.+++++ +|
T Consensus 158 ~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~-~~~~L~~l~~~-~g 235 (299)
T 1zbh_A 158 KKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR-SQTKLTIMLEK-LG 235 (299)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG-GGCSHHHHHHH-TT
T ss_pred HHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCC-CCccHHHHHHH-cC
Confidence 3455677653 24789999999998 7753 3576654 36798666543433231 25899999986 46
Q ss_pred ccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhcC
Q 048832 166 KEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNAN 209 (211)
Q Consensus 166 ~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~~ 209 (211)
.+.... .++ |..||.++.+|+..+.+.
T Consensus 236 i~~~g~----~H~-------------Al~DA~ata~l~~~l~~~ 262 (299)
T 1zbh_A 236 MDYDGR----PNC-------------GLDDSKNIARIAVRMLQD 262 (299)
T ss_dssp CCCCSC----TTC-------------HHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC----CCC-------------hHHHHHHHHHHHHHHHHh
Confidence 543210 122 788999999998887654
No 22
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=93.98 E-value=0.17 Score=38.95 Aligned_cols=78 Identities=17% Similarity=0.040 Sum_probs=51.9
Q ss_pred CceEEEeeeHHHHHHHHH---hcCCCC----C-cEeecHHHHHhhccccccccccHHHHHHHHcCccCCCCCCccccCCC
Q 048832 109 DYTFVGVGIDGDVKKLEN---NYGLQV----F-RTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVNKPRNITLSAWD 180 (211)
Q Consensus 109 ~i~kvg~~~k~d~~~L~~---~~gi~~----~-~~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~l~k~~~~~~s~W~ 180 (211)
..+.||||...|+..|.+ .+|+.. . ..+|+..++..++ | .++|..+++. +|.+..... .++
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~--~---~~~L~~l~~~-~gi~~~~~~---~H~-- 194 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAY--G---QTVLAKACQA-AGMEFDNRE---AHS-- 194 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHH--S---CCSHHHHHHH-TTCCCCTTS---CCC--
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHc--C---CCCHHHHHHH-cCCCcCCCC---CCC--
Confidence 467899999999988863 357652 1 3589977765333 3 4689999986 466542111 122
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 181 TRVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 181 ~~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
|..||.++.+|+..+.+
T Consensus 195 -----------Al~Da~~ta~l~~~l~~ 211 (224)
T 2f96_A 195 -----------ARYDTEKTAELFCGIVN 211 (224)
T ss_dssp -----------HHHHHHHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHHH
Confidence 77888888888776653
No 23
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=93.54 E-value=0.41 Score=39.64 Aligned_cols=92 Identities=9% Similarity=-0.044 Sum_probs=60.2
Q ss_pred HHHHHhhcCC-----CceEEEeeeHHHHH-HHHH---hcCCCCC----cEeecHHHHHhhccccccccccHHHHHHHHcC
Q 048832 99 QSLANFLSDE-----DYTFVGVGIDGDVK-KLEN---NYGLQVF----RTVDLRPLAAEDLEIEGLRFAGLKALSWEVLE 165 (211)
Q Consensus 99 ~~L~~~L~~~-----~i~kvg~~~k~d~~-~L~~---~~gi~~~----~~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~ 165 (211)
..|..|+.+. ....|+||...|+. .|.+ .+|+... ..+|+..++..+.+.+. ..++|..|+++ +|
T Consensus 208 ~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~-~~~~L~~l~~~-~g 285 (349)
T 1zbu_A 208 KKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR-SQTKLTIMLEK-LG 285 (349)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG-GGGSHHHHHHH-TT
T ss_pred HHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCC-CCCCHHHHHHH-cC
Confidence 3455677653 14789999999998 7753 3576653 35799766543433221 25899999986 46
Q ss_pred ccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhcC
Q 048832 166 KEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNAN 209 (211)
Q Consensus 166 ~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~~ 209 (211)
++.... .++ |..||.++.+|+..|.+.
T Consensus 286 i~~~g~----~Hr-------------Al~DA~ata~ll~~ll~~ 312 (349)
T 1zbu_A 286 MDYDGR----PHC-------------GLDDSKNIARIAVRMLQD 312 (349)
T ss_dssp CCCCSC----TTC-------------HHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC----CCC-------------HHHHHHHHHHHHHHHHHh
Confidence 543210 122 788999999998887654
No 24
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=92.45 E-value=1.7 Score=39.82 Aligned_cols=145 Identities=19% Similarity=0.266 Sum_probs=81.1
Q ss_pred CcEEEEeeeeecCCCC--CCCCeeEEEeee--CCeeEEEeccc--------c-C--cchHHHHHhhc--CCCceEEEeee
Q 048832 55 CLIVGLDVEWRPSFSR--QQNPVATLQLCV--GRRCLIFQIIH--------A-R--RIPQSLANFLS--DEDYTFVGVGI 117 (211)
Q Consensus 55 ~~~v~~d~e~~~~~~~--~~~~~~llql~~--~~~~~i~~~~~--------~-~--~~~~~L~~~L~--~~~i~kvg~~~ 117 (211)
-.+++||+|..+...+ ...++ +||+. .+...++-... . + ++...+..++. ||. ..+|||.
T Consensus 135 l~ilsfDIEt~~~~~p~~~~d~I--i~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPD-iivGyN~ 211 (775)
T 1qht_A 135 LTMLAFAIATLYHEGEEFGTGPI--LMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPD-VLITYNG 211 (775)
T ss_dssp CCEEEEEEEECCCTTCCTTCSCE--EEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCS-EEEESST
T ss_pred cEEEEEEEEEcCCCCCCCCCCcE--EEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCC-EEEEeCC
Confidence 4789999998753111 23343 55553 33222221110 0 1 23344444444 465 4689998
Q ss_pred H-HHHHHHHH---hcCCCC----------------------Cc--EeecHHHHHhhccccccccccHHHHHHHHcCccCC
Q 048832 118 D-GDVKKLEN---NYGLQV----------------------FR--TVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKEVN 169 (211)
Q Consensus 118 k-~d~~~L~~---~~gi~~----------------------~~--~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~l~ 169 (211)
. .|+..|.+ .+|+.. .| .+|+-.++...+ ...+++|+.+++++||..-.
T Consensus 212 ~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~---~l~sysL~~Va~~~Lg~~K~ 288 (775)
T 1qht_A 212 DNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI---NLPTYTLEAVYEAVFGKPKE 288 (775)
T ss_dssp TTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS---CCSCCCHHHHHHHHHCCCCC
T ss_pred CCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhc---CcCcCCHHHHHHHHhCCCCC
Confidence 5 58876653 355542 23 368755554322 23479999999999986322
Q ss_pred CCC--CccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHH
Q 048832 170 KPR--NITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVL 206 (211)
Q Consensus 170 k~~--~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L 206 (211)
.-. ++ ..-|...+--..-++|+..||..+++|+..+
T Consensus 289 dv~~~~i-~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~ 326 (775)
T 1qht_A 289 KVYAEEI-AQAWESGEGLERVARYSMEDAKVTYELGREF 326 (775)
T ss_dssp CCCHHHH-HHHHTTTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHH-HHHHhcCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 100 11 1235443311456999999999999997655
No 25
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=91.24 E-value=0.057 Score=50.68 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=61.1
Q ss_pred ceEEEeeeHHHHHHHHHhcCCCCCc--EeecHHHHHhh----------c-c------------------------cc---
Q 048832 110 YTFVGVGIDGDVKKLENNYGLQVFR--TVDLRPLAAED----------L-E------------------------IE--- 149 (211)
Q Consensus 110 i~kvg~~~k~d~~~L~~~~gi~~~~--~~D~~~la~~~----------l-~------------------------~~--- 149 (211)
-+.||||+.+|...+.++|.++-.+ ++|++-|.... + . .|
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~ 274 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAIS 274 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcccc
Confidence 4568999999999888889887765 36986332100 0 0 01
Q ss_pred ---cc---ccc--cHHHHHHHHcCc-cCCCCCCccccCCCCCCCCHH---HHHHHHHhHHHHHHHHHHHh
Q 048832 150 ---GL---RFA--GLKALSWEVLEK-EVNKPRNITLSAWDTRVLTPA---QVLYACLDAFIAFEIGRVLN 207 (211)
Q Consensus 150 ---~~---~~~--~L~~l~~~~L~~-~l~k~~~~~~s~W~~~~L~~~---q~~yAa~da~~~~~L~~~L~ 207 (211)
.. +.. ||.++++.++|. .++|.....+..-+...+..+ -..|+|.|+.++++++.++.
T Consensus 275 ~~~W~~~sS~N~~SL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~ 344 (1172)
T 3ikm_A 275 SWDWLDISSVNSNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQL 344 (1172)
T ss_dssp -CCCCCCCCTTSHHHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCcCCHHHHHHHhCCCcccChhhHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 00 124 799999999986 787764322222122222222 38999999999999988763
No 26
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=88.81 E-value=0.6 Score=37.88 Aligned_cols=90 Identities=9% Similarity=0.037 Sum_probs=54.5
Q ss_pred HHHHhhcCCCceEEEeee------HHHH-HHHH---HhcCCCCC----cEeecHHHHHhhcccccc----ccccHHHHHH
Q 048832 100 SLANFLSDEDYTFVGVGI------DGDV-KKLE---NNYGLQVF----RTVDLRPLAAEDLEIEGL----RFAGLKALSW 161 (211)
Q Consensus 100 ~L~~~L~~~~i~kvg~~~------k~d~-~~L~---~~~gi~~~----~~~D~~~la~~~l~~~~~----~~~~L~~l~~ 161 (211)
.|..|+.+.. .|+|++ ..|+ ..|. +.+|+... ..+|+..++...+..... .+++|.++++
T Consensus 101 ~f~~~l~~~~--lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~ 178 (308)
T 3cg7_A 101 QFQQWLITLG--LEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNE 178 (308)
T ss_dssp HHHHHHHHHC--CCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHH
T ss_pred HHHHHHHhCC--cCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHHHH
Confidence 4555666432 245555 7888 4554 35677765 358997776544432211 1578999996
Q ss_pred HHcCccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhcC
Q 048832 162 EVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNAN 209 (211)
Q Consensus 162 ~~L~~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~~ 209 (211)
. +|.+.... .++ |..||.++.+|+..|.+.
T Consensus 179 ~-~gi~~~~~----~Hr-------------Al~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 179 Y-YDLPTIGR----AHD-------------AMDDCLNIATILQRMINM 208 (308)
T ss_dssp H-TTCCCCSC----TTC-------------HHHHHHHHHHHHHHHHHT
T ss_pred H-cCCCCCCC----CcC-------------HHHHHHHHHHHHHHHHHc
Confidence 5 46544211 122 788999999998887654
No 27
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=87.51 E-value=11 Score=34.80 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=59.4
Q ss_pred chHHHHHhhcCCCceEEEeeeH-HHHHHHHH---hcCCC-------C--------Cc--EeecHHHHHh-----hccccc
Q 048832 97 IPQSLANFLSDEDYTFVGVGID-GDVKKLEN---NYGLQ-------V--------FR--TVDLRPLAAE-----DLEIEG 150 (211)
Q Consensus 97 ~~~~L~~~L~~~~i~kvg~~~k-~d~~~L~~---~~gi~-------~--------~~--~~D~~~la~~-----~l~~~~ 150 (211)
+...+..++.+.. ..+|||.. .|+-.|.+ .+|+. + .+ .+|+...... |.-...
T Consensus 260 LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~k 338 (847)
T 1s5j_A 260 LLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGK 338 (847)
T ss_dssp HHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTC
T ss_pred HHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccccc
Confidence 4556677787775 68999985 68877753 35553 1 12 2565432211 111111
Q ss_pred cccccHHHHHHHHcCccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHH
Q 048832 151 LRFAGLKALSWEVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIG 203 (211)
Q Consensus 151 ~~~~~L~~l~~~~L~~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~ 203 (211)
..+++|+.+++.+||..-. .+ ...|... -...-++|+-.||..+++|+
T Consensus 339 l~sysL~~Va~~~Lg~~K~---dv-~~~i~~~-~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 339 YNEYNLDAVAKALLGTSKV---KV-DTLISFL-DVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp CSSCSHHHHHHHHHCCCCC------SSCTTTC-CHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHhCCCCc---ch-hHhhhhc-cHHHHHHHHHHHHHHHHHHH
Confidence 2489999999999985311 11 1223221 12335899999999999884
No 28
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=80.01 E-value=3.4 Score=31.55 Aligned_cols=89 Identities=18% Similarity=0.174 Sum_probs=53.6
Q ss_pred HHHHHhhcCCCceEEEeee--------HHHHHH-HH---HhcCCCCC----cEeecHHHHHhhc-cccccccccHHHHHH
Q 048832 99 QSLANFLSDEDYTFVGVGI--------DGDVKK-LE---NNYGLQVF----RTVDLRPLAAEDL-EIEGLRFAGLKALSW 161 (211)
Q Consensus 99 ~~L~~~L~~~~i~kvg~~~--------k~d~~~-L~---~~~gi~~~----~~~D~~~la~~~l-~~~~~~~~~L~~l~~ 161 (211)
+.+..|+.+. ..||||. ..|+.. |. +.+|+... ..+|++....... ..| .++|..+++
T Consensus 109 ~~f~~~l~~~--~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p---~~~L~~l~~ 183 (224)
T 2xri_A 109 ERVDEWMAKE--GLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWP---KNGLLDMNK 183 (224)
T ss_dssp HHHHHHHHHT--TTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCC---TTTHHHHHH
T ss_pred HHHHHHHhhc--ccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCC---CCCHHHHHH
Confidence 3455666653 2357777 888884 53 34677654 4578643332111 122 478999997
Q ss_pred HHcCccCCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhcCC
Q 048832 162 EVLEKEVNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNAND 210 (211)
Q Consensus 162 ~~L~~~l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~~~ 210 (211)
. +|.+... . ..+ |..||.++.+|+..|.+.+
T Consensus 184 ~-~gi~~~~-~---~H~-------------Al~DA~~ta~l~~~l~~~g 214 (224)
T 2xri_A 184 G-LSLQHIG-R---PHS-------------GIDDCKNIANIMKTLAYRG 214 (224)
T ss_dssp H-TTCCCCS-C---TTC-------------HHHHHHHHHHHHHHHHHTT
T ss_pred H-cCCCCCC-C---CcC-------------hHHHHHHHHHHHHHHHHcC
Confidence 4 4654321 0 122 7889999999998887654
No 29
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=78.80 E-value=11 Score=27.82 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=20.4
Q ss_pred HHHHHhhcCCC----ceEEEeeeHHHHHHHHHh
Q 048832 99 QSLANFLSDED----YTFVGVGIDGDVKKLENN 127 (211)
Q Consensus 99 ~~L~~~L~~~~----i~kvg~~~k~d~~~L~~~ 127 (211)
+.+.+++.+.- ...||||+..|...|.+.
T Consensus 90 ~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~ 122 (194)
T 2gbz_A 90 AQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQ 122 (194)
T ss_dssp HHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCceEEecCHHHhHHHHHHH
Confidence 34556676531 348999999999999653
No 30
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=67.75 E-value=29 Score=24.98 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=20.9
Q ss_pred HHHHHhhcCC----CceEEEeeeHHHHHHHHHh
Q 048832 99 QSLANFLSDE----DYTFVGVGIDGDVKKLENN 127 (211)
Q Consensus 99 ~~L~~~L~~~----~i~kvg~~~k~d~~~L~~~ 127 (211)
+.+..++.+- ..+.||||+..|...|.+.
T Consensus 86 ~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~ 118 (180)
T 2igi_A 86 LATLEFLKQWVPAGKSPICGNSIGQDRRFLFKY 118 (180)
T ss_dssp HHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCceEEecCHHHHHHHHHHH
Confidence 3456667641 3578999999999999643
No 31
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=64.94 E-value=72 Score=27.96 Aligned_cols=140 Identities=11% Similarity=-0.035 Sum_probs=74.6
Q ss_pred CcEEEEeeeeecCCCCCCCCeeEEEeeeCC--eeEEEeccccCcchHHHHHhhcCCCceEEEeeeHHHHHHHHHh---cC
Q 048832 55 CLIVGLDVEWRPSFSRQQNPVATLQLCVGR--RCLIFQIIHARRIPQSLANFLSDEDYTFVGVGIDGDVKKLENN---YG 129 (211)
Q Consensus 55 ~~~v~~d~e~~~~~~~~~~~~~llql~~~~--~~~i~~~~~~~~~~~~L~~~L~~~~i~kvg~~~k~d~~~L~~~---~g 129 (211)
..++++|+|.... +..+++-.+.+..++ ..+... ..+.+ +-.++.+.+...++||++.|...|.++ .|
T Consensus 6 ~~i~~~D~Et~~d--~~~~~~~~i~~~~~~~~~~~~~~----~~l~~-fi~~~~~~~~~i~~hNl~FD~~~l~~~~~~~~ 78 (575)
T 2py5_A 6 RKMYSCAFETTTK--VEDCRVWAYGYMNIEDHSEYKIG----NSLDE-FMAWVLKVQADLYFHNLKFAGAFIINWLERNG 78 (575)
T ss_dssp CCEEEEEEEECCB--TTBCCEEEEEEEESSCTTCEEEE----SCHHH-HHHHHHHHCCEEEETTHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEEeecC--CCCCceEEEEEEeCCceEEEEec----hhHHH-HHHHHHHcCCEEEEEChhhhHHHHHHHHHHhC
Confidence 5799999998543 233455445555543 233322 12333 333444445667889999999888643 23
Q ss_pred CC-------------C-Cc--E--eecHHHH--H-----hhcccc-ccccccHHHHHHHHcCccCCCCC----CccccCC
Q 048832 130 LQ-------------V-FR--T--VDLRPLA--A-----EDLEIE-GLRFAGLKALSWEVLEKEVNKPR----NITLSAW 179 (211)
Q Consensus 130 i~-------------~-~~--~--~D~~~la--~-----~~l~~~-~~~~~~L~~l~~~~L~~~l~k~~----~~~~s~W 179 (211)
.. + ++ . +++. +. . -.+.+. .....+|+.+++.+.. ...|.. .+..-+|
T Consensus 79 ~~~~~~~~p~~~~~~i~r~~~~~~~~i~-~~~~~k~~~~i~~~Ds~~~~~~SL~~~a~~f~~-~~~K~~~py~~~~~~~~ 156 (575)
T 2py5_A 79 FKWSADGLPNTYNTIISRMGQWYMIDIC-LGYKGKRKIHTVIYDSLKKLPFPVKKIAKDFKL-TVLKGDIDYHKERPVGY 156 (575)
T ss_dssp CEECTTCCTTEEEEEEBTTCCEEEEEEE-EEEETTEEEEEEEEEHHHHSCSCHHHHHHHTTC-CCCSSCCCTTSCCCTTC
T ss_pred cccccccccccccceeccCCeEEEEEEE-EecCCCceEEEEEEEhHhhhhhhHHHHHHHhCC-cccCCccCccccCcccc
Confidence 11 1 11 1 1221 00 0 000000 0125789999987653 222211 1111233
Q ss_pred CCCCCCHHHHHHHHHhHHHHHHHHHHH
Q 048832 180 DTRVLTPAQVLYACLDAFIAFEIGRVL 206 (211)
Q Consensus 180 ~~~~L~~~q~~yAa~da~~~~~L~~~L 206 (211)
.+.++-+.|+..|+..+..+....
T Consensus 157 ---~~~~~~~~Y~~~Dv~ll~~i~~~~ 180 (575)
T 2py5_A 157 ---KITPEEYAYIKNDIQIIAEALLIQ 180 (575)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999987653
No 32
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=62.38 E-value=19 Score=30.41 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=50.6
Q ss_pred hcCCCceEEEeeeHHHHHHHHHhcCCCC---------------CcEeecHHHHHhhcc-ccccccccHHHHHHHHcCccC
Q 048832 105 LSDEDYTFVGVGIDGDVKKLENNYGLQV---------------FRTVDLRPLAAEDLE-IEGLRFAGLKALSWEVLEKEV 168 (211)
Q Consensus 105 L~~~~i~kvg~~~k~d~~~L~~~~gi~~---------------~~~~D~~~la~~~l~-~~~~~~~~L~~l~~~~L~~~l 168 (211)
|...+-+.||||+-.|+-.+.+.|--++ ..++||..++. ... .....+.+|.++.+.+-....
T Consensus 277 L~~s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~-~~~~~~~~~~~sL~~l~~~l~~~~~ 355 (430)
T 2a1r_A 277 IANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS-TQPFKDIINNTSLAELEKRLKETPF 355 (430)
T ss_dssp HHHHCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHT-STTTTTTCSCCSHHHHHHHTTSTTC
T ss_pred HHhCCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhh-ccchhhccCCCCHHHHHHHHHhCCC
Confidence 3334456799999999987765542222 35789954442 221 111235789998876533211
Q ss_pred CCCCCcccc-CCCCCCCCHHHHHHHHHhHHHHHHHHHHHh
Q 048832 169 NKPRNITLS-AWDTRVLTPAQVLYACLDAFIAFEIGRVLN 207 (211)
Q Consensus 169 ~k~~~~~~s-~W~~~~L~~~q~~yAa~da~~~~~L~~~L~ 207 (211)
....+... ....-.-..++..-|+-||+.+-.+.-.|.
T Consensus 356 -~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~ 394 (430)
T 2a1r_A 356 -NPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMA 394 (430)
T ss_dssp -CCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHH
T ss_pred -CCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHH
Confidence 11122211 000100112344557778887766555443
No 33
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=50.93 E-value=22 Score=30.76 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=53.1
Q ss_pred hhcCCCceEEEeeeHHHHHHHHHhcCCCC---------------CcEeecHHHHHhhcc-ccccccccHHHHHHHHcCcc
Q 048832 104 FLSDEDYTFVGVGIDGDVKKLENNYGLQV---------------FRTVDLRPLAAEDLE-IEGLRFAGLKALSWEVLEKE 167 (211)
Q Consensus 104 ~L~~~~i~kvg~~~k~d~~~L~~~~gi~~---------------~~~~D~~~la~~~l~-~~~~~~~~L~~l~~~~L~~~ 167 (211)
.|...+.+.||||+-.|+-.|.+.|--++ +.++||..++ .... .......+|..+.+.+-...
T Consensus 271 ~L~~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la-~~~~~~~~~~~~~L~~l~~~l~~~~ 349 (507)
T 3d45_A 271 AIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMA-STQPFKDIINNTSLAELEKRLKETP 349 (507)
T ss_dssp HHHHHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHT-TSTTHHHHCCCCCHHHHHHHTTSTT
T ss_pred HHHhCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhh-hcCccccccCCCCHHHHHHHHhccC
Confidence 44445688999999999987775542222 3578995444 2211 00113678999988763221
Q ss_pred CCCCCCccc----cCCCCCCCCHHHHHHHHHhHHHHHHHHHHHh
Q 048832 168 VNKPRNITL----SAWDTRVLTPAQVLYACLDAFIAFEIGRVLN 207 (211)
Q Consensus 168 l~k~~~~~~----s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~ 207 (211)
. ....+.. ..+. .+..+..-|+.||+.+-.++-+|.
T Consensus 350 ~-~~p~i~~~~~~~~y~---~~~~~~HeAGyDA~mTg~~F~kl~ 389 (507)
T 3d45_A 350 F-DPPKVESAEGFPSYD---TASEQLHEAGYDAYITGLCFISMA 389 (507)
T ss_dssp C-CCCCEEECTTSCCCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred C-CCCeEEecccccccc---cCCCCcccHHHHHHHHHHHHHHHH
Confidence 1 1111111 1111 112233457888888877766654
No 34
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=34.37 E-value=29 Score=16.30 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCC
Q 048832 198 IAFEIGRVLNANDV 211 (211)
Q Consensus 198 ~~~~L~~~L~~~~~ 211 (211)
++-+|+++|.+|+|
T Consensus 12 yleqlhrklknckv 25 (26)
T 1xkm_B 12 YLEQLHRKLKNCKV 25 (26)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCC
Confidence 44578999999887
No 35
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=33.88 E-value=1.7e+02 Score=23.05 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=47.9
Q ss_pred cCCCceEEEeeeHHHHHHHHHhc-CCCC---------------CcEeecHHHHHhhccccccccccHHHHHHHHcCcc-C
Q 048832 106 SDEDYTFVGVGIDGDVKKLENNY-GLQV---------------FRTVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKE-V 168 (211)
Q Consensus 106 ~~~~i~kvg~~~k~d~~~L~~~~-gi~~---------------~~~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~-l 168 (211)
-++++.+|.+..-+|...|.+.+ |-.+ +.++|+..++. ... + ..-||+++|+.+ +.+ +
T Consensus 147 l~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~-~~~--~-l~ggL~~lA~~L-~v~r~ 221 (285)
T 4gmj_B 147 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMK-SCK--N-LKGGLQEVAEQL-ELERI 221 (285)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGG-GST--T-CCSCHHHHHHHT-TCCCC
T ss_pred hcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHH-hcc--c-cCChHHHHHHhC-CCCCC
Confidence 46789999888888886665432 2222 24678854543 331 1 245899999874 432 2
Q ss_pred CCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 048832 169 NKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVLNA 208 (211)
Q Consensus 169 ~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L~~ 208 (211)
.+.. | |..|++.+...+-+|++
T Consensus 222 g~~H---------------q---AGsDSllT~~~F~kl~~ 243 (285)
T 4gmj_B 222 GPQH---------------Q---AGSDSLLTGMAFFKMRE 243 (285)
T ss_dssp SCTT---------------S---HHHHHHHHHHHHHHHHH
T ss_pred CCCC---------------c---chhHHHHHHHHHHHHHH
Confidence 2111 2 67778877777766653
No 36
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=33.43 E-value=41 Score=27.79 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=40.6
Q ss_pred EeecHHHHHhhccccccccccHHHHHHHHcCcc-CCCCCCccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHH
Q 048832 135 TVDLRPLAAEDLEIEGLRFAGLKALSWEVLEKE-VNKPRNITLSAWDTRVLTPAQVLYACLDAFIAFEIGRVL 206 (211)
Q Consensus 135 ~~D~~~la~~~l~~~~~~~~~L~~l~~~~L~~~-l~k~~~~~~s~W~~~~L~~~q~~yAa~da~~~~~L~~~L 206 (211)
.+|+-.++.. +......+++|+.+++++||.. .+-.+++. .-|. .-...-++|+..||..+++|+.++
T Consensus 267 ~lD~~~~~k~-~~~~~l~sysL~~Va~~~Lg~~K~d~~~~i~-~~~~--~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 267 ILDYLDLYKK-FAFTNLPSFSLESVAQHETKKGKLPYDGPIN-KLRE--TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp ECCHHHHHHH-HTCCCCSCCSHHHHHHHHHSCCCCCCSSCGG-GHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeEHHHHHhh-cCcCcccCCCHHHHHHHHhCCCCCCcHHHHH-HHHH--hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677555532 1111145899999999999853 11112211 1132 011235899999999999999875
No 37
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=29.29 E-value=1.1e+02 Score=19.40 Aligned_cols=33 Identities=6% Similarity=0.167 Sum_probs=26.7
Q ss_pred ceeEEEeCCeEEEEEEeCChHHHHHHHHHHHHH
Q 048832 16 DEYTVHFYDDVVFTQVTRSPSVVDDWISEIERI 48 (211)
Q Consensus 16 ~~~~v~~~~~~i~~~~~~~~~~l~~~i~~l~~~ 48 (211)
..+.|..++.....-.++++++..+|++.+...
T Consensus 67 ~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~ 99 (107)
T 2cof_A 67 YSFRILHKGEELAKLEAKSSEEMGHWLGLLLSE 99 (107)
T ss_dssp CEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence 467777776777778899999999999998753
No 38
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=28.65 E-value=1.1e+02 Score=19.54 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=25.3
Q ss_pred eeEEEeCCeEEEEEEeCChHHHHHHHHHHHH
Q 048832 17 EYTVHFYDDVVFTQVTRSPSVVDDWISEIER 47 (211)
Q Consensus 17 ~~~v~~~~~~i~~~~~~~~~~l~~~i~~l~~ 47 (211)
.+.|..++.....-.++++++..+|++.+..
T Consensus 78 ~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~ 108 (112)
T 3aj4_A 78 MLQIVCRDGKTISLCAESTDDCLAWKFTLQD 108 (112)
T ss_dssp EEEEEETTSCEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEecCCcEEEEEeCCHHHHHHHHHHHHH
Confidence 6777767666777789999999999998864
No 39
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=27.93 E-value=56 Score=31.51 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=33.2
Q ss_pred cccccHHHHHHHHcCccCCC--CCCccccCCCCCCC-CHHHHHHHHHhHHHHHHHHHHH
Q 048832 151 LRFAGLKALSWEVLEKEVNK--PRNITLSAWDTRVL-TPAQVLYACLDAFIAFEIGRVL 206 (211)
Q Consensus 151 ~~~~~L~~l~~~~L~~~l~k--~~~~~~s~W~~~~L-~~~q~~yAa~da~~~~~L~~~L 206 (211)
..+++|+.+++.+||..-.. .+++. .-|...+- ...-+.|+..||..+.+|+.++
T Consensus 493 l~sYsL~~Va~~~Lg~~K~dv~~~eI~-~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 493 LSSYKLNAVAEAVLKDKKKDLSYRDIP-AYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp CSCCCHHHHHHHTSCCCCCCCCTTTHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhccCCCCCCHHHHH-HHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999853211 11110 11211110 0123689999999999988765
No 40
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=24.68 E-value=1.3e+02 Score=18.71 Aligned_cols=33 Identities=6% Similarity=0.163 Sum_probs=26.0
Q ss_pred CceeEEEeCCeEEEEEEeCChHHHHHHHHHHHH
Q 048832 15 HDEYTVHFYDDVVFTQVTRSPSVVDDWISEIER 47 (211)
Q Consensus 15 ~~~~~v~~~~~~i~~~~~~~~~~l~~~i~~l~~ 47 (211)
...+.|..+++......++++++.++|++.+..
T Consensus 58 ~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~ 90 (103)
T 3rcp_A 58 NTRMELIIPGEQHFYMKAVNAAERQRWLVALGS 90 (103)
T ss_dssp SSEEEEEETTTEEEEEECSSHHHHHHHHHHHHT
T ss_pred CceEEEEeCCCCEEEEECCCHHHHHHHHHHHHH
Confidence 345677777666777789999999999999874
No 41
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.50 E-value=1.5e+02 Score=19.29 Aligned_cols=35 Identities=6% Similarity=0.252 Sum_probs=26.0
Q ss_pred CceeEEEeCCeEEEEEEeCChHHHHHHHHHHHHHh
Q 048832 15 HDEYTVHFYDDVVFTQVTRSPSVVDDWISEIERIH 49 (211)
Q Consensus 15 ~~~~~v~~~~~~i~~~~~~~~~~l~~~i~~l~~~~ 49 (211)
...+.|..++.....--++++++..+|++.+....
T Consensus 82 ~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~ 116 (123)
T 1wjm_A 82 KHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI 116 (123)
T ss_dssp SSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 34677776665556668889999999999987533
No 42
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=24.48 E-value=1.1e+02 Score=19.88 Aligned_cols=33 Identities=12% Similarity=0.329 Sum_probs=25.9
Q ss_pred ceeEEEeCCeEEEEEEeCChHHHHHHHHHHHHH
Q 048832 16 DEYTVHFYDDVVFTQVTRSPSVVDDWISEIERI 48 (211)
Q Consensus 16 ~~~~v~~~~~~i~~~~~~~~~~l~~~i~~l~~~ 48 (211)
..+.+.+.+...+.--++++++.++|++.+...
T Consensus 67 ~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~ 99 (112)
T 3cxb_B 67 HAFQVILSDRPCLELSAESEAEMAEWMQHLCQA 99 (112)
T ss_dssp TEEEEEETTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 477777776666667888999999999998653
No 43
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=24.30 E-value=72 Score=22.34 Aligned_cols=37 Identities=8% Similarity=0.265 Sum_probs=30.2
Q ss_pred CCCceeEEEeCCeEEEEEEeCChHHHHHHHHHHHHHh
Q 048832 13 NTHDEYTVHFYDDVVFTQVTRSPSVVDDWISEIERIH 49 (211)
Q Consensus 13 ~~~~~~~v~~~~~~i~~~~~~~~~~l~~~i~~l~~~~ 49 (211)
++.++|.|...+...++.-+.++.++.+|+..++.++
T Consensus 93 D~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~ 129 (136)
T 1v5m_A 93 EKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCV 129 (136)
T ss_dssp CCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHH
T ss_pred CccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhc
Confidence 4678888888887677778889999999999987654
No 44
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.44 E-value=1.5e+02 Score=19.78 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=25.2
Q ss_pred ceeEEEeCCeEEEEEEeCChHHHHHHHHHHHHH
Q 048832 16 DEYTVHFYDDVVFTQVTRSPSVVDDWISEIERI 48 (211)
Q Consensus 16 ~~~~v~~~~~~i~~~~~~~~~~l~~~i~~l~~~ 48 (211)
..+.|...+.......++++++.++|++.|...
T Consensus 80 ~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a 112 (130)
T 2d9v_A 80 GLLTVNLREGSRLHLCAETRDDAIAWKTALMEA 112 (130)
T ss_dssp TEEEEEETTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 367776655455667889999999999998753
No 45
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=23.27 E-value=1.5e+02 Score=18.83 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=26.0
Q ss_pred ceeEEEeCCeEEEEEEeCChHHHHHHHHHHHHH
Q 048832 16 DEYTVHFYDDVVFTQVTRSPSVVDDWISEIERI 48 (211)
Q Consensus 16 ~~~~v~~~~~~i~~~~~~~~~~l~~~i~~l~~~ 48 (211)
..+.|..++.....-.++++++..+|++.+...
T Consensus 67 ~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~ 99 (113)
T 1pls_A 67 FVFKITTTKQQDHFFQAAFLEERDAWVRDINKA 99 (113)
T ss_dssp SEEEEEETTTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 367777777666667889999999999998753
No 46
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=22.14 E-value=1.7e+02 Score=19.00 Aligned_cols=32 Identities=6% Similarity=0.139 Sum_probs=24.5
Q ss_pred ceeEEEeCCeEEEEEEeCChHHHHHHHHHHHH
Q 048832 16 DEYTVHFYDDVVFTQVTRSPSVVDDWISEIER 47 (211)
Q Consensus 16 ~~~~v~~~~~~i~~~~~~~~~~l~~~i~~l~~ 47 (211)
..+.|..++.....-.++++++.++|++.+..
T Consensus 85 ~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~ 116 (128)
T 2dkp_A 85 YAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 116 (128)
T ss_dssp SEEEEECSSSCCEEEECSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 35666666555566788899999999999875
No 47
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=21.92 E-value=1.5e+02 Score=18.48 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=25.9
Q ss_pred CCceeEEEeCCeEEEEEEeCChHHHHHHHHHHHH
Q 048832 14 THDEYTVHFYDDVVFTQVTRSPSVVDDWISEIER 47 (211)
Q Consensus 14 ~~~~~~v~~~~~~i~~~~~~~~~~l~~~i~~l~~ 47 (211)
....+.|..++.....-.++++++..+|++.+..
T Consensus 73 ~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~ 106 (109)
T 2i5f_A 73 EENLFEIITADEVHYFLQAATPKERTEWIKAIQM 106 (109)
T ss_dssp CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHH
T ss_pred CceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 3456777777665555678999999999998864
No 48
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.54 E-value=1.7e+02 Score=18.63 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=24.3
Q ss_pred eeEEEeCCeEEEEEEeCChHHHHHHHHHHHH
Q 048832 17 EYTVHFYDDVVFTQVTRSPSVVDDWISEIER 47 (211)
Q Consensus 17 ~~~v~~~~~~i~~~~~~~~~~l~~~i~~l~~ 47 (211)
.+.|..++.....-.++++++..+|++.+..
T Consensus 76 ~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~ 106 (117)
T 2d9y_A 76 TFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 106 (117)
T ss_dssp EEEEECSSSCEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCcEEEEEcCCHHHHHHHHHHHHH
Confidence 5666556656666788999999999999875
Done!