BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048833
(629 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 62/268 (23%)
Query: 15 NLDQLQKVLRYSL--KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKV 72
N+++ + LR + K R LL++DDVW+ +W +L + +IL+TTR + V
Sbjct: 219 NIEEAKDRLRILMLRKHPRSLLILDDVWD----SW-----VLKAFDSQCQILLTTRDKSV 269
Query: 73 A-SIMGTR---------GGTTGFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIV 122
S+MG + G G + LSLF+ K +L + I+
Sbjct: 270 TDSVMGPKYVVPVESSLGKEKGLEI--------LSLFVNM-------KKADLPEQAHSII 314
Query: 123 KKCGGIPLAVRTLGSLLYDSTDEHFWEY----VRDNEIWQLEQKES----GILPALRLSY 174
K+C G PL V +G+LL D + WEY +++ + ++ + S + A+ +S
Sbjct: 315 KECKGSPLVVSLIGALLRDFPNR--WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISV 372
Query: 175 DQLPPRLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLS 234
+ L +K SI KD K + L W + E++EDI L+E ++
Sbjct: 373 EMLREDIKDYYTDLSILQKDVKVPTKVLCILW--------DMETEEVEDI----LQEFVN 420
Query: 235 RSFFQDLTFGMFGLEVLTFKMHDLMHDL 262
+S L F + + +HDL D
Sbjct: 421 KS----LLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 62/268 (23%)
Query: 15 NLDQLQKVLRYSL--KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKV 72
N+++ + LR + K R LL++DDVW ++W +L + +IL+TTR + V
Sbjct: 225 NIEEAKDRLRILMLRKHPRSLLILDDVW----DSW-----VLKAFDSQCQILLTTRDKSV 275
Query: 73 A-SIMGTR---------GGTTGFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIV 122
S+MG + G G + LSLF+ K +L + I+
Sbjct: 276 TDSVMGPKYVVPVESSLGKEKGLEI--------LSLFVNM-------KKADLPEQAHSII 320
Query: 123 KKCGGIPLAVRTLGSLLYDSTDEHFWEY----VRDNEIWQLEQKES----GILPALRLSY 174
K+C G PL V +G+LL D + WEY +++ + ++ + S + A+ +S
Sbjct: 321 KECKGSPLVVSLIGALLRDFPNR--WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISV 378
Query: 175 DQLPPRLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLS 234
+ L +K SI KD K + L W + E++EDI L+E ++
Sbjct: 379 EMLREDIKDYYTDLSILQKDVKVPTKVLCILWDM--------ETEEVEDI----LQEFVN 426
Query: 235 RSFFQDLTFGMFGLEVLTFKMHDLMHDL 262
+S L F + + +HDL D
Sbjct: 427 KS----LLFCDRNGKSFRYYLHDLQVDF 450
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 118/263 (44%), Gaps = 52/263 (19%)
Query: 15 NLDQLQKVLRYSL--KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKV 72
N+++ + LR + K R LL++DDVW DP W +L N +IL+TTR + V
Sbjct: 219 NIEEAKDRLRVLMLRKHPRSLLILDDVW--DP--W-----VLKAFDNQCQILLTTRDKSV 269
Query: 73 A-SIMGTRGGT---TGFNLQ-GLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGG 127
S+MG + +G + GL + LSLF+ K +L I+K+C G
Sbjct: 270 TDSVMGPKHVVPVESGLGREKGL---EILSLFVNM-------KKEDLPAEAHSIIKECKG 319
Query: 128 IPLAVRTLGSLLYDSTDEHFWEY----VRDNEIWQLEQKES----GILPALRLSYDQLPP 179
PL V +G+LL D + W Y +++ + ++ + S + A+ +S + L
Sbjct: 320 SPLVVSLIGALLRDFPNR--WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE 377
Query: 180 RLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQ 239
+K SI KD K + L W + E++EDI L+E +++S
Sbjct: 378 DIKDYYTDLSILQKDVKVPTKVLCVLWDL--------ETEEVEDI----LQEFVNKS--- 422
Query: 240 DLTFGMFGLEVLTFKMHDLMHDL 262
L F + + +HDL D
Sbjct: 423 -LLFCNRNGKSFCYYLHDLQVDF 444
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 117/263 (44%), Gaps = 52/263 (19%)
Query: 15 NLDQLQKVLRYSL--KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKV 72
N+++ + LR + K R LL++DDVW DP W +L N +IL+TT + V
Sbjct: 226 NIEEAKDRLRVLMLRKHPRSLLILDDVW--DP--W-----VLKAFDNQCQILLTTSDKSV 276
Query: 73 A-SIMGTRGGT---TGFNLQ-GLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGG 127
S+MG + +G + GL + LSLF+ K +L I+K+C G
Sbjct: 277 TDSVMGPKHVVPVESGLGREKGL---EILSLFVNM-------KKEDLPAEAHSIIKECKG 326
Query: 128 IPLAVRTLGSLLYDSTDEHFWEY----VRDNEIWQLEQKES----GILPALRLSYDQLPP 179
PL V +G+LL D + W Y +++ + ++ + S + A+ +S + L
Sbjct: 327 SPLVVSLIGALLRDFPNR--WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE 384
Query: 180 RLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQ 239
+K SI KD K + L W + E++EDI L+E +++S
Sbjct: 385 DIKDYYTDLSILQKDVKVPTKVLCVLWDL--------ETEEVEDI----LQEFVNKS--- 429
Query: 240 DLTFGMFGLEVLTFKMHDLMHDL 262
L F + + +HDL D
Sbjct: 430 -LLFCNRNGKSFCYYLHDLQVDF 451
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 86/229 (37%), Gaps = 72/229 (31%)
Query: 361 MRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDI---------KYLVNLRV 411
+ L L+RN ++ LP SI L L L + C EL ELP+ + + LVNL+
Sbjct: 129 LETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 412 LVLTTKQKSLQEXXXXXXXXXXXXKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLP 471
L L + G R L I L L++L I + P L +L
Sbjct: 188 LRL---------------------EWTGIRSLP---ASIANLQNLKSLKIRNSP-LSALG 222
Query: 472 PAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQ 531
PAI +L LE L L C +L +N P +F
Sbjct: 223 PAIHHLPKLEELDLRGCTAL-----------------RNYPP----IF------------ 249
Query: 532 WLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLP 580
G L+ L + C N + LP + L LE L + C LS LP
Sbjct: 250 ----GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 555 LPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPALSERCKPPTGED 611
LP + + LETL +AR P L +LP + + L+ L+I CP L+E +P D
Sbjct: 119 LPDTXQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTD 174
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 28/165 (16%)
Query: 452 QLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNT 511
+LS L+ +I++ L LP + + LE L LAR N + + +R
Sbjct: 102 RLSHLQHXTIDAA-GLXELPDTXQQFAGLETLTLAR------NPLRALPASIASLNR--- 151
Query: 512 RPHLRRVFIMEITQLLELPQWLLQGSTDT---------LRDLFIVSCPNFMALPRSLKDL 562
LR + I +L ELP+ L STD L+ L + +LP S+ +L
Sbjct: 152 ---LRELSIRACPELTELPEPL--ASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANL 205
Query: 563 EALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPALSERCKPP 607
+ L++L I P LS+L +HH+ L+ L + GC AL R PP
Sbjct: 206 QNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTAL--RNYPP 247
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 88/239 (36%), Gaps = 41/239 (17%)
Query: 368 RNSKIKKLPKSICELQSLE--TLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQEXX 425
R+ + + P L L+ T+D AG L ELP + L L L
Sbjct: 89 RSVPLPQFPDQAFRLSHLQHXTIDAAG---LXELPDTXQQFAGLETLTLARN-------- 137
Query: 426 XXXXXXXXXXKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLP-PAIKYLSSLENLY 484
L L I L+ LR LSI +CP L LP P +S E+
Sbjct: 138 ----------------PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181
Query: 485 LARCESLDLNLNMEIEGEGSHHDRKNTRP-HLRRVFIMEITQLLE-LPQWLLQGSTDTLR 542
L +SL L S + +N + +R + + + LP+ L
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK---------LE 232
Query: 543 DLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPALS 601
+L + C P L+ L++ C L +LP +H +T L+ L + GC LS
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 355 MGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYL-VNLRVLV 413
G ++ L L S + LP I L LE LDL GC+ L LP I L N +LV
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308
Query: 414 LTTKQKSLQE 423
Q L +
Sbjct: 309 PPHLQAQLDQ 318
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 25/101 (24%)
Query: 338 LRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELE 397
L+ L L + I + NL++++ L + RNS + L +I L LE LDL GC L
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 398 E------------------------LPKDIKYLVNLRVLVL 414
LP DI L L L L
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 331 CISKSQFLRVLNLSESSIEV---CSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLET 387
C+ K + L+ L+LS S IE C+ ++ NL+H++YL+LS N + ++ E LE
Sbjct: 344 CLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLEL 403
Query: 388 LDLA 391
LD+A
Sbjct: 404 LDVA 407
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 331 CISKSQFLRVLNLSESSIEV---CSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLET 387
C+ K L+ L+LS + IE CS ++ NL H++ L+LS N + ++ E LE
Sbjct: 342 CLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLEL 401
Query: 388 LDLA 391
LDLA
Sbjct: 402 LDLA 405
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 331 CISKSQFLRVLNLSESSIEV---CSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLET 387
C+ + LR L+LS IE C+ ++ NL H++ L+LS N + ++ E LE
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
Query: 388 LDLA 391
LDLA
Sbjct: 405 LDLA 408
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 325 QSFVESCISKSQFLRVLNLSESSIE-VCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ 383
++ I +L +LNL + I ++G+L+ + LDLS N ++P+++ L
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 384 SLETLDLA 391
L +DL+
Sbjct: 702 MLTEIDLS 709
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 325 QSFVESCISKSQFLRVLNLSESSIE-VCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ 383
++ I +L +LNL + I ++G+L+ + LDLS N ++P+++ L
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 384 SLETLDLA 391
L +DL+
Sbjct: 705 MLTEIDLS 712
>pdb|3C67|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Glucose
pdb|3C67|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Glucose
pdb|3C68|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Mannose
pdb|3C68|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Mannose
pdb|3C69|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Galactose
pdb|3C69|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Galactose
Length = 761
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 494 NLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQ 535
NL+ E G+G + + +NT+P L +ME+ + + W+ +
Sbjct: 374 NLSPERGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKTWVAE 415
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 364 LDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLT 415
LDLS N +I + +I + L L L G L ELP +IK L NLRVL L+
Sbjct: 229 LDLS-NLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLS 278
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 361 MRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDI 403
++ LDL N KIK +PK + +L++L+ L++A +L+ +P I
Sbjct: 423 IKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGI 463
>pdb|4ATN|A Chain A, Crystal Structure Of C2498 2'-O-Ribose Methyltransferase
Rlmm From Escherichia Coli
pdb|4B17|A Chain A, Crystal Structure Of C2498 2'-O-Ribose Methyltransferase
Rlmm From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 375
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 468 ISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVF 519
+ LP +Y NL + + + +N +I+ +HDR+ H+RR++
Sbjct: 305 LKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRRIW 356
>pdb|4AUK|A Chain A, Crystal Structure Of C2498 2'-O-Ribose Methyltransferase
Rlmm From Escherichia Coli
pdb|4AUK|B Chain B, Crystal Structure Of C2498 2'-O-Ribose Methyltransferase
Rlmm From Escherichia Coli
Length = 375
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 468 ISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVF 519
+ LP +Y NL + + + +N +I+ +HDR+ H+RR++
Sbjct: 305 LKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRRIW 356
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,580,933
Number of Sequences: 62578
Number of extensions: 694310
Number of successful extensions: 1641
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1603
Number of HSP's gapped (non-prelim): 38
length of query: 629
length of database: 14,973,337
effective HSP length: 105
effective length of query: 524
effective length of database: 8,402,647
effective search space: 4402987028
effective search space used: 4402987028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)