Query 048833
Match_columns 629
No_of_seqs 350 out of 3673
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 13:57:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.3E-64 7.2E-69 546.2 27.8 562 16-605 247-847 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.9E-56 1.3E-60 509.0 41.8 525 21-603 287-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2E-30 4.2E-35 256.2 5.2 209 3-215 69-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 3.2E-24 6.8E-29 247.6 17.3 331 284-627 94-439 (968)
5 PLN00113 leucine-rich repeat r 99.9 9.7E-24 2.1E-28 243.5 18.2 310 283-599 140-464 (968)
6 KOG0444 Cytoskeletal regulator 99.9 1.6E-24 3.5E-29 214.4 -4.3 299 285-607 80-382 (1255)
7 PLN03210 Resistant to P. syrin 99.9 6.8E-21 1.5E-25 219.9 22.6 268 330-604 552-886 (1153)
8 KOG0444 Cytoskeletal regulator 99.9 3E-24 6.4E-29 212.6 -7.5 294 284-601 56-353 (1255)
9 KOG4194 Membrane glycoprotein 99.8 3.5E-21 7.6E-26 189.7 3.7 304 280-599 75-428 (873)
10 KOG4194 Membrane glycoprotein 99.8 6.8E-20 1.5E-24 180.7 7.7 178 308-491 78-258 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 3.8E-20 8.3E-25 174.6 -7.6 243 334-598 66-308 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 1.6E-19 3.5E-24 170.4 -6.1 272 301-598 199-539 (565)
13 PRK15370 E3 ubiquitin-protein 99.6 6.7E-15 1.4E-19 159.3 11.4 223 337-598 200-426 (754)
14 PRK15387 E3 ubiquitin-protein 99.6 3.2E-14 6.9E-19 153.0 15.0 234 309-598 223-456 (788)
15 KOG0617 Ras suppressor protein 99.6 6.4E-17 1.4E-21 135.3 -4.6 166 303-476 28-194 (264)
16 KOG0617 Ras suppressor protein 99.5 1.4E-16 3.1E-21 133.2 -4.5 152 334-489 31-184 (264)
17 cd00116 LRR_RI Leucine-rich re 99.5 6.5E-15 1.4E-19 148.2 3.2 92 302-393 17-118 (319)
18 PRK15387 E3 ubiquitin-protein 99.5 9.7E-14 2.1E-18 149.4 12.2 243 282-581 221-463 (788)
19 KOG0618 Serine/threonine phosp 99.5 1.7E-15 3.7E-20 158.0 -1.6 175 307-489 240-418 (1081)
20 PRK15370 E3 ubiquitin-protein 99.5 9.3E-14 2E-18 150.5 11.0 222 336-598 178-399 (754)
21 KOG0618 Serine/threonine phosp 99.4 6E-15 1.3E-19 154.0 -2.2 273 310-598 23-321 (1081)
22 cd00116 LRR_RI Leucine-rich re 99.4 4.1E-14 8.8E-19 142.3 -0.1 160 330-489 17-204 (319)
23 KOG4237 Extracellular matrix p 99.2 3.7E-12 8E-17 121.1 0.1 133 280-418 64-199 (498)
24 KOG4237 Extracellular matrix p 99.1 2.6E-12 5.6E-17 122.1 -2.8 127 311-441 70-199 (498)
25 KOG1909 Ran GTPase-activating 99.0 8.3E-11 1.8E-15 110.5 1.8 243 300-575 22-310 (382)
26 KOG4658 Apoptotic ATPase [Sign 99.0 1.7E-10 3.7E-15 127.4 2.8 259 305-581 520-788 (889)
27 KOG0532 Leucine-rich repeat (L 99.0 2.1E-11 4.5E-16 121.3 -4.0 169 310-489 77-245 (722)
28 KOG0532 Leucine-rich repeat (L 99.0 4.2E-11 9.2E-16 119.2 -2.5 213 339-597 53-270 (722)
29 KOG3207 Beta-tubulin folding c 98.8 5.3E-10 1.1E-14 108.1 0.3 208 332-574 117-337 (505)
30 KOG4341 F-box protein containi 98.8 1.5E-10 3.3E-15 111.2 -3.3 83 536-624 369-457 (483)
31 COG4886 Leucine-rich repeat (L 98.8 1.2E-08 2.5E-13 105.7 7.1 151 335-489 115-266 (394)
32 PF14580 LRR_9: Leucine-rich r 98.8 4.7E-09 1E-13 92.7 3.4 101 336-440 19-123 (175)
33 COG4886 Leucine-rich repeat (L 98.7 8.7E-09 1.9E-13 106.7 5.3 193 340-576 97-290 (394)
34 KOG3207 Beta-tubulin folding c 98.7 7.4E-09 1.6E-13 100.4 3.3 202 284-488 122-336 (505)
35 KOG4341 F-box protein containi 98.7 7.3E-10 1.6E-14 106.6 -3.7 169 427-604 239-418 (483)
36 PF14580 LRR_9: Leucine-rich r 98.6 9.1E-09 2E-13 90.9 1.7 138 346-488 7-150 (175)
37 KOG1259 Nischarin, modulator o 98.6 9.4E-09 2E-13 94.6 1.0 128 405-575 282-411 (490)
38 KOG2120 SCF ubiquitin ligase, 98.6 1.3E-09 2.8E-14 100.2 -5.5 178 384-598 186-374 (419)
39 KOG1259 Nischarin, modulator o 98.4 3E-08 6.4E-13 91.4 -0.4 125 337-465 285-410 (490)
40 KOG2120 SCF ubiquitin ligase, 98.4 2.1E-08 4.6E-13 92.4 -1.7 178 308-488 185-373 (419)
41 KOG1909 Ran GTPase-activating 98.4 1E-07 2.2E-12 90.2 2.2 191 300-490 84-310 (382)
42 PLN03150 hypothetical protein; 98.3 1.1E-06 2.3E-11 95.6 7.4 105 385-489 420-526 (623)
43 PLN03150 hypothetical protein; 98.3 1.3E-06 2.8E-11 94.9 7.2 112 360-471 419-532 (623)
44 PF13855 LRR_8: Leucine rich r 98.2 2E-06 4.3E-11 62.1 4.4 56 337-393 2-59 (61)
45 KOG2982 Uncharacterized conser 98.1 8.8E-07 1.9E-11 81.9 2.0 114 512-628 172-289 (418)
46 PRK15386 type III secretion pr 98.1 1.9E-05 4.2E-10 78.7 10.2 35 379-417 48-82 (426)
47 PF13855 LRR_8: Leucine rich r 98.0 7.7E-06 1.7E-10 59.0 4.9 58 539-598 1-60 (61)
48 KOG0531 Protein phosphatase 1, 98.0 1.4E-06 3.1E-11 90.4 0.6 95 343-441 79-173 (414)
49 PRK15386 type III secretion pr 98.0 1.7E-05 3.6E-10 79.1 8.0 63 334-401 50-112 (426)
50 COG5238 RNA1 Ran GTPase-activa 97.9 4.2E-06 9E-11 76.5 2.3 186 302-488 24-252 (388)
51 PRK04841 transcriptional regul 97.9 0.00021 4.5E-09 82.9 16.5 204 29-267 120-332 (903)
52 KOG0531 Protein phosphatase 1, 97.9 2.5E-06 5.5E-11 88.5 0.1 106 332-441 91-197 (414)
53 KOG3665 ZYG-1-like serine/thre 97.6 4.7E-05 1E-09 82.7 3.6 149 252-420 105-263 (699)
54 PF12799 LRR_4: Leucine Rich r 97.6 8.8E-05 1.9E-09 48.9 3.4 33 337-369 2-34 (44)
55 KOG1947 Leucine rich repeat pr 97.5 1.5E-05 3.3E-10 85.1 -1.4 61 544-604 381-444 (482)
56 KOG3665 ZYG-1-like serine/thre 97.5 0.00011 2.3E-09 79.9 4.9 134 308-446 122-266 (699)
57 PF12799 LRR_4: Leucine Rich r 97.5 0.00012 2.5E-09 48.3 3.1 39 359-399 1-39 (44)
58 KOG1859 Leucine-rich repeat pr 97.5 9.6E-06 2.1E-10 84.1 -3.3 79 336-419 187-266 (1096)
59 KOG4579 Leucine-rich repeat (L 97.3 1.7E-05 3.7E-10 65.0 -2.8 102 338-441 29-134 (177)
60 KOG2982 Uncharacterized conser 97.3 0.00013 2.8E-09 68.0 2.2 20 536-555 246-265 (418)
61 KOG1859 Leucine-rich repeat pr 97.3 9.8E-06 2.1E-10 84.1 -5.5 111 302-422 181-294 (1096)
62 KOG1947 Leucine rich repeat pr 97.2 7.3E-05 1.6E-09 79.9 -0.6 43 537-579 399-443 (482)
63 KOG1644 U2-associated snRNP A' 96.9 0.0017 3.6E-08 57.4 5.0 78 361-441 44-124 (233)
64 KOG4579 Leucine-rich repeat (L 96.6 0.00049 1.1E-08 56.7 0.1 84 305-393 50-133 (177)
65 KOG1644 U2-associated snRNP A' 96.6 0.0043 9.2E-08 54.9 5.6 104 382-488 41-150 (233)
66 TIGR03015 pepcterm_ATPase puta 96.5 0.05 1.1E-06 52.9 13.5 112 28-140 121-243 (269)
67 KOG2739 Leucine-rich acidic nu 96.4 0.002 4.4E-08 59.4 2.2 84 357-442 41-128 (260)
68 PRK06893 DNA replication initi 96.3 0.02 4.3E-07 54.0 8.6 103 31-139 92-207 (229)
69 PRK00080 ruvB Holliday junctio 96.2 0.055 1.2E-06 54.3 12.0 157 60-240 151-309 (328)
70 PF05729 NACHT: NACHT domain 96.2 0.029 6.2E-07 49.9 9.0 75 28-102 79-162 (166)
71 COG5238 RNA1 Ran GTPase-activa 96.1 0.0077 1.7E-07 55.8 4.4 49 301-349 85-133 (388)
72 PRK00411 cdc6 cell division co 96.0 1.1 2.4E-05 46.3 20.8 227 15-257 121-375 (394)
73 TIGR00635 ruvB Holliday juncti 95.7 0.14 3.1E-06 50.8 12.4 156 60-241 130-289 (305)
74 COG2909 MalT ATP-dependent tra 95.6 0.16 3.4E-06 55.2 12.5 222 14-269 111-340 (894)
75 KOG2739 Leucine-rich acidic nu 95.5 0.0044 9.4E-08 57.3 0.7 102 336-440 43-153 (260)
76 KOG2123 Uncharacterized conser 95.4 0.0025 5.5E-08 59.0 -1.3 97 284-389 20-123 (388)
77 KOG2123 Uncharacterized conser 94.7 0.0032 7E-08 58.4 -2.7 99 307-413 18-123 (388)
78 PF00560 LRR_1: Leucine Rich R 94.5 0.025 5.4E-07 30.8 1.5 18 338-355 2-19 (22)
79 PF13306 LRR_5: Leucine rich r 94.4 0.16 3.5E-06 42.8 7.3 34 333-367 9-43 (129)
80 PF01637 Arch_ATPase: Archaeal 94.3 0.29 6.4E-06 46.1 9.6 102 30-134 118-233 (234)
81 COG3899 Predicted ATPase [Gene 94.1 0.33 7.2E-06 55.0 10.8 199 22-239 145-355 (849)
82 PF13306 LRR_5: Leucine rich r 93.8 0.35 7.5E-06 40.7 8.1 103 354-463 7-112 (129)
83 PF00560 LRR_1: Leucine Rich R 93.8 0.032 6.9E-07 30.4 1.0 20 360-380 1-20 (22)
84 PF13173 AAA_14: AAA domain 93.3 0.2 4.4E-06 42.2 5.7 74 20-95 51-127 (128)
85 PRK07471 DNA polymerase III su 92.8 0.81 1.8E-05 46.3 10.1 99 29-136 140-239 (365)
86 PRK06645 DNA polymerase III su 92.4 2.1 4.5E-05 45.4 12.8 100 28-132 126-226 (507)
87 TIGR00678 holB DNA polymerase 91.9 0.91 2E-05 41.3 8.6 91 29-130 95-186 (188)
88 PRK05564 DNA polymerase III su 91.7 1.8 4E-05 43.0 11.0 97 28-133 91-188 (313)
89 TIGR03420 DnaA_homol_Hda DnaA 91.4 1.1 2.3E-05 42.2 8.7 100 32-137 92-203 (226)
90 PRK09087 hypothetical protein; 91.3 1.9 4.1E-05 40.5 10.1 95 32-134 89-194 (226)
91 PF13504 LRR_7: Leucine rich r 91.3 0.14 3E-06 25.8 1.4 14 338-351 3-16 (17)
92 TIGR02928 orc1/cdc6 family rep 91.2 18 0.00038 36.9 18.1 212 17-242 114-351 (365)
93 PRK13342 recombination factor 91.1 1.4 3.1E-05 45.7 9.9 105 28-137 90-198 (413)
94 KOG4308 LRR-containing protein 90.8 0.0082 1.8E-07 62.6 -6.9 43 556-599 397-444 (478)
95 TIGR02903 spore_lon_C ATP-depe 90.6 1 2.2E-05 49.2 8.6 118 17-139 279-399 (615)
96 PRK14961 DNA polymerase III su 90.1 2.6 5.7E-05 42.8 10.6 99 29-132 118-217 (363)
97 PRK09112 DNA polymerase III su 89.2 2.4 5.2E-05 42.7 9.4 101 29-136 140-241 (351)
98 PRK12323 DNA polymerase III su 89.1 4.7 0.0001 43.6 11.7 103 28-135 122-225 (700)
99 PRK08727 hypothetical protein; 88.3 3.6 7.8E-05 38.8 9.5 97 30-132 93-201 (233)
100 TIGR02397 dnaX_nterm DNA polym 88.1 6.7 0.00015 39.8 12.2 102 29-135 116-218 (355)
101 KOG0989 Replication factor C, 87.9 1.7 3.8E-05 41.6 6.8 101 32-137 131-233 (346)
102 PRK07003 DNA polymerase III su 87.8 5.7 0.00012 43.8 11.4 101 29-134 118-220 (830)
103 COG3903 Predicted ATPase [Gene 87.7 0.41 8.8E-06 47.8 2.7 207 17-239 75-290 (414)
104 PRK12402 replication factor C 87.6 4 8.6E-05 41.1 10.1 100 29-133 124-224 (337)
105 PRK14963 DNA polymerase III su 87.6 3.6 7.8E-05 43.7 9.9 99 29-132 115-214 (504)
106 KOG3864 Uncharacterized conser 87.2 0.14 3E-06 45.7 -0.7 37 562-598 150-187 (221)
107 PRK05707 DNA polymerase III su 87.0 4.9 0.00011 40.1 10.0 97 29-135 106-203 (328)
108 PRK14959 DNA polymerase III su 86.8 4.4 9.6E-05 43.8 10.0 107 28-139 117-225 (624)
109 PLN03025 replication factor C 86.5 6.6 0.00014 39.2 10.7 99 29-132 98-197 (319)
110 PRK14955 DNA polymerase III su 86.5 7.9 0.00017 40.0 11.5 99 29-132 126-225 (397)
111 PRK14960 DNA polymerase III su 86.3 12 0.00025 40.8 12.6 101 28-133 116-217 (702)
112 PRK08691 DNA polymerase III su 85.7 10 0.00023 41.5 12.1 99 29-132 118-217 (709)
113 KOG0473 Leucine-rich repeat pr 85.6 0.047 1E-06 49.5 -4.5 55 337-392 66-120 (326)
114 KOG3864 Uncharacterized conser 85.4 0.19 4.2E-06 44.8 -0.8 64 540-603 102-167 (221)
115 PRK14957 DNA polymerase III su 84.4 10 0.00022 40.6 11.3 104 28-136 117-222 (546)
116 PRK06620 hypothetical protein; 84.3 12 0.00026 34.8 10.5 94 31-132 86-186 (214)
117 smart00367 LRR_CC Leucine-rich 84.3 0.59 1.3E-05 26.6 1.2 18 586-603 1-18 (26)
118 KOG4308 LRR-containing protein 84.0 0.045 9.7E-07 57.2 -6.3 165 301-465 108-301 (478)
119 PRK14956 DNA polymerase III su 83.8 8.6 0.00019 40.2 10.1 100 28-132 119-219 (484)
120 PRK14954 DNA polymerase III su 83.3 14 0.0003 40.3 11.9 97 29-130 126-223 (620)
121 PRK04132 replication factor C 83.2 14 0.00031 41.6 12.2 114 16-134 610-730 (846)
122 PRK07940 DNA polymerase III su 83.2 7.8 0.00017 39.7 9.5 96 29-134 116-212 (394)
123 PRK08451 DNA polymerase III su 83.1 23 0.0005 37.8 13.2 115 16-135 99-218 (535)
124 PRK14964 DNA polymerase III su 82.8 20 0.00042 37.9 12.4 98 29-131 115-213 (491)
125 PRK14949 DNA polymerase III su 82.8 11 0.00025 42.4 11.0 103 28-135 117-220 (944)
126 PF00308 Bac_DnaA: Bacterial d 82.7 5.1 0.00011 37.4 7.5 104 23-133 91-206 (219)
127 PRK08084 DNA replication initi 82.0 12 0.00025 35.4 9.7 99 32-136 99-210 (235)
128 PRK14971 DNA polymerase III su 82.0 22 0.00047 39.0 12.9 99 29-132 120-219 (614)
129 PRK08903 DnaA regulatory inact 81.5 6.1 0.00013 37.1 7.7 104 31-140 91-204 (227)
130 PRK05642 DNA replication initi 80.9 11 0.00023 35.7 9.0 101 33-139 100-212 (234)
131 KOG0473 Leucine-rich repeat pr 80.4 0.085 1.8E-06 48.0 -5.0 86 332-419 38-123 (326)
132 COG2256 MGS1 ATPase related to 80.3 5.3 0.00011 40.0 6.7 103 26-131 100-208 (436)
133 PRK00440 rfc replication facto 80.1 13 0.00029 36.8 10.1 98 30-132 102-200 (319)
134 PRK07994 DNA polymerase III su 80.0 14 0.00031 40.4 10.5 102 28-134 117-219 (647)
135 PRK07399 DNA polymerase III su 78.1 17 0.00037 36.0 9.7 97 29-134 123-220 (314)
136 PRK13341 recombination factor 77.8 24 0.00051 39.5 11.6 94 29-130 108-212 (725)
137 PRK14950 DNA polymerase III su 77.8 25 0.00054 38.4 11.7 101 29-134 119-220 (585)
138 PRK07764 DNA polymerase III su 77.3 33 0.00071 39.0 12.7 99 28-131 118-217 (824)
139 PRK14970 DNA polymerase III su 76.8 17 0.00037 37.1 9.7 97 29-130 107-204 (367)
140 PRK06305 DNA polymerase III su 76.6 32 0.00069 36.2 11.7 101 29-134 120-222 (451)
141 PRK07133 DNA polymerase III su 76.6 30 0.00064 38.4 11.7 102 29-135 117-220 (725)
142 smart00370 LRR Leucine-rich re 76.4 1.7 3.7E-05 24.5 1.3 17 337-353 3-19 (26)
143 smart00369 LRR_TYP Leucine-ric 76.4 1.7 3.7E-05 24.5 1.3 17 337-353 3-19 (26)
144 PRK14951 DNA polymerase III su 76.4 22 0.00047 38.8 10.6 100 29-133 123-223 (618)
145 TIGR01242 26Sp45 26S proteasom 76.1 11 0.00024 38.4 8.1 97 29-129 214-328 (364)
146 PRK14962 DNA polymerase III su 75.7 13 0.00029 39.1 8.7 104 29-137 116-221 (472)
147 PRK04195 replication factor C 75.6 49 0.0011 35.2 13.1 103 30-139 98-206 (482)
148 PRK06647 DNA polymerase III su 75.0 47 0.001 36.0 12.7 100 28-132 117-217 (563)
149 PRK06871 DNA polymerase III su 74.3 29 0.00063 34.5 10.1 93 29-131 106-199 (325)
150 PRK08769 DNA polymerase III su 73.6 17 0.00037 36.0 8.4 97 29-136 112-209 (319)
151 PRK14087 dnaA chromosomal repl 73.6 18 0.00039 38.0 9.0 112 23-139 200-323 (450)
152 PRK14969 DNA polymerase III su 73.3 25 0.00055 37.7 10.2 97 29-130 118-215 (527)
153 PRK05896 DNA polymerase III su 72.8 37 0.00081 36.8 11.1 102 30-136 119-222 (605)
154 PF13401 AAA_22: AAA domain; P 71.6 7.2 0.00016 32.6 4.7 53 15-69 71-125 (131)
155 PRK09111 DNA polymerase III su 70.5 30 0.00064 37.8 9.9 101 29-134 131-232 (598)
156 COG1373 Predicted ATPase (AAA+ 70.4 33 0.00072 35.4 10.0 68 30-100 94-164 (398)
157 PRK06964 DNA polymerase III su 68.0 34 0.00074 34.3 9.1 94 29-135 131-225 (342)
158 PRK14953 DNA polymerase III su 67.9 58 0.0012 34.6 11.3 101 28-133 117-218 (486)
159 PRK14952 DNA polymerase III su 67.8 71 0.0015 34.8 12.0 105 29-138 117-223 (584)
160 PRK14958 DNA polymerase III su 67.7 41 0.00089 35.9 10.2 99 29-132 118-217 (509)
161 PRK06090 DNA polymerase III su 67.6 83 0.0018 31.3 11.6 94 29-135 107-201 (319)
162 PRK14948 DNA polymerase III su 65.6 58 0.0012 35.8 11.0 102 29-135 120-222 (620)
163 PRK07132 DNA polymerase III su 64.6 90 0.0019 30.7 11.1 72 29-102 89-161 (299)
164 PRK07993 DNA polymerase III su 64.1 40 0.00087 33.7 8.8 94 29-132 107-201 (334)
165 PRK14965 DNA polymerase III su 60.4 66 0.0014 35.1 10.3 102 29-135 118-221 (576)
166 PRK08058 DNA polymerase III su 58.8 92 0.002 31.2 10.4 73 28-102 108-181 (329)
167 PF13177 DNA_pol3_delta2: DNA 58.3 13 0.00028 32.8 3.8 73 15-90 83-161 (162)
168 PRK03992 proteasome-activating 54.8 58 0.0013 33.5 8.4 97 29-129 223-337 (389)
169 PRK05563 DNA polymerase III su 54.2 1.8E+02 0.004 31.6 12.4 99 28-131 117-216 (559)
170 PRK08485 DNA polymerase III su 53.7 1.3E+02 0.0028 27.4 9.2 84 16-101 39-137 (206)
171 TIGR02880 cbbX_cfxQ probable R 52.8 96 0.0021 30.2 9.2 74 31-105 122-210 (284)
172 PF02463 SMC_N: RecF/RecN/SMC 52.8 16 0.00035 34.0 3.7 49 29-77 157-206 (220)
173 PTZ00112 origin recognition co 52.6 1.1E+02 0.0024 34.9 10.2 108 31-140 870-987 (1164)
174 PRK14086 dnaA chromosomal repl 50.4 88 0.0019 34.1 9.0 91 32-128 379-481 (617)
175 cd00009 AAA The AAA+ (ATPases 50.2 33 0.00073 28.8 5.2 46 26-71 80-131 (151)
176 smart00364 LRR_BAC Leucine-ric 49.7 11 0.00023 21.5 1.2 17 337-353 3-19 (26)
177 COG3267 ExeA Type II secretory 49.5 1.6E+02 0.0035 28.0 9.4 107 28-136 128-246 (269)
178 PF13516 LRR_6: Leucine Rich r 47.8 5.7 0.00012 21.8 -0.1 6 362-367 5-10 (24)
179 COG0593 DnaA ATPase involved i 47.1 75 0.0016 32.6 7.5 98 31-133 176-288 (408)
180 PF14516 AAA_35: AAA-like doma 44.3 1.2E+02 0.0026 30.4 8.6 53 83-142 194-246 (331)
181 TIGR00362 DnaA chromosomal rep 42.9 1E+02 0.0023 31.8 8.2 98 32-132 201-307 (405)
182 CHL00181 cbbX CbbX; Provisiona 42.8 2.2E+02 0.0047 27.9 9.9 74 32-106 124-212 (287)
183 PF05496 RuvB_N: Holliday junc 42.6 1.3E+02 0.0028 28.1 7.6 115 15-135 88-221 (233)
184 PF02562 PhoH: PhoH-like prote 42.2 30 0.00065 31.7 3.6 44 26-72 112-158 (205)
185 PHA02544 44 clamp loader, smal 40.4 90 0.0019 30.9 7.1 71 29-101 99-171 (316)
186 PF05673 DUF815: Protein of un 40.1 3.3E+02 0.0072 25.8 11.2 48 28-75 104-156 (249)
187 smart00365 LRR_SD22 Leucine-ri 39.9 24 0.00051 20.1 1.6 13 337-349 3-15 (26)
188 PRK14088 dnaA chromosomal repl 39.0 1.9E+02 0.004 30.4 9.3 98 30-130 194-300 (440)
189 PRK00149 dnaA chromosomal repl 37.1 1.4E+02 0.0029 31.5 8.1 99 31-132 212-319 (450)
190 PRK12422 chromosomal replicati 33.9 2E+02 0.0044 30.2 8.6 94 31-127 203-305 (445)
191 cd00561 CobA_CobO_BtuR ATP:cor 32.5 81 0.0018 27.6 4.5 50 22-71 86-139 (159)
192 PF06144 DNA_pol3_delta: DNA p 32.4 2.2E+02 0.0047 24.9 7.6 99 29-132 56-163 (172)
193 PRK08116 hypothetical protein; 32.2 45 0.00098 32.2 3.3 47 23-70 172-221 (268)
194 PTZ00454 26S protease regulato 30.4 2.1E+02 0.0045 29.6 7.8 101 25-129 233-351 (398)
195 cd03286 ABC_MSH6_euk MutS6 hom 29.8 48 0.001 30.8 2.9 59 29-88 108-171 (218)
196 CHL00176 ftsH cell division pr 29.3 3E+02 0.0065 30.5 9.2 106 19-128 264-387 (638)
197 PRK10536 hypothetical protein; 29.0 91 0.002 29.8 4.6 44 26-72 169-215 (262)
198 PF00004 AAA: ATPase family as 28.6 1.3E+02 0.0028 24.7 5.3 54 17-70 44-112 (132)
199 PTZ00361 26 proteosome regulat 28.1 1.3E+02 0.0029 31.4 6.0 100 26-129 272-389 (438)
200 TIGR02881 spore_V_K stage V sp 28.0 5.3E+02 0.011 24.6 9.9 73 32-105 107-193 (261)
201 smart00368 LRR_RI Leucine rich 27.8 44 0.00095 19.2 1.5 12 337-348 3-14 (28)
202 KOG2035 Replication factor C, 27.3 2.2E+02 0.0049 27.5 6.6 101 30-135 126-229 (351)
203 PRK07276 DNA polymerase III su 26.3 2.8E+02 0.0062 27.1 7.6 69 29-100 103-172 (290)
204 smart00534 MUTSac ATPase domai 26.2 1.4E+02 0.0031 26.7 5.3 57 21-78 67-130 (185)
205 TIGR03689 pup_AAA proteasome A 26.2 1.4E+02 0.0031 31.9 5.9 75 29-103 288-378 (512)
206 PF07693 KAP_NTPase: KAP famil 26.0 3.7E+02 0.0081 26.5 8.9 59 17-77 157-221 (325)
207 KOG3763 mRNA export factor TAP 24.3 27 0.00059 36.6 0.3 37 452-488 216-254 (585)
208 TIGR01128 holA DNA polymerase 24.0 6.7E+02 0.015 24.3 12.0 114 16-132 31-150 (302)
209 PRK06581 DNA polymerase III su 23.9 5.8E+02 0.012 24.3 8.6 76 28-105 87-163 (263)
210 PRK08699 DNA polymerase III su 23.8 2.1E+02 0.0045 28.6 6.3 70 30-102 114-184 (325)
211 PRK13695 putative NTPase; Prov 23.5 2.6E+02 0.0057 24.6 6.5 61 30-93 96-162 (174)
212 TIGR01241 FtsH_fam ATP-depende 23.0 3.5E+02 0.0076 28.9 8.3 107 19-129 136-260 (495)
213 PF14050 Nudc_N: N-terminal co 21.1 1.4E+02 0.003 21.3 3.2 30 114-143 3-32 (62)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-64 Score=546.19 Aligned_cols=562 Identities=31% Similarity=0.475 Sum_probs=419.2
Q ss_pred HHHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHh-hcccCCCCceeCCCCChhh
Q 048833 16 LDQLQKVLRYSLKGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVASI-MGTRGGTTGFNLQGLPFED 94 (629)
Q Consensus 16 ~~~~~~~l~~~L~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~-~~~~~~~~~~~l~~L~~~~ 94 (629)
.++++..|.+.|++|||+|||||||+. .+|+.+..++|...+||||++|||++.||.. +++. ..+++++|.++|
T Consensus 247 ~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~---~~~~v~~L~~~e 321 (889)
T KOG4658|consen 247 EDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVD---YPIEVECLTPEE 321 (889)
T ss_pred HHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCC---ccccccccCccc
Confidence 368899999999999999999999986 4699999999998899999999999999998 6553 889999999999
Q ss_pred HHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCCCCHHHHHHHhhhhccc----cccccCCcchhh
Q 048833 95 CLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDSTDEHFWEYVRDNEIWQ----LEQKESGILPAL 170 (629)
Q Consensus 95 a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~l 170 (629)
||+||++.||......++.+..+|++|+++|+|+|||+.++|+.|+.|++..+|+++.+...+. ..+..+.++.+|
T Consensus 322 aW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iL 401 (889)
T KOG4658|consen 322 AWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPIL 401 (889)
T ss_pred cHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhh
Confidence 9999999999886666677999999999999999999999999999999999999988765443 233467889999
Q ss_pred hcccccCChhhhhhhhhhccCCCCceeChHhHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCCceeecccCCCCceE
Q 048833 171 RLSYDQLPPRLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMFGLEV 250 (629)
Q Consensus 171 ~~sy~~L~~~~k~~fl~~~~fp~~~~~~~~~l~~~wi~eg~i~~~~~~~~~~~~~~~~l~~L~~r~ll~~~~~~~~~~~~ 250 (629)
++|||.||++.|.||+|||.||||+.++++.++.+|+||||+.+......+++.|..|+++|++++++...... + +.
T Consensus 402 klSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~-~~ 478 (889)
T KOG4658|consen 402 KLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--G-RK 478 (889)
T ss_pred hccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--c-ce
Confidence 99999999889999999999999999999999999999999988767889999999999999999999887653 3 67
Q ss_pred EEEEeChhHHHHHHHHhc-----cceEEEecC-------CCCCCCcceEEEEEcccCCcchhhhhccCCCCceEEEEecC
Q 048833 251 LTFKMHDLMHDLAMLVAK-----DEFLVVNSD-------CQSIPKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTD 318 (629)
Q Consensus 251 ~~~~mhd~~~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 318 (629)
.+|+|||++|+||.++++ ++..+...+ ....+..+|+.++..+..... ..-..+++|++|.+..|
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n 555 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRN 555 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCccceEEEeec
Confidence 899999999999999999 666555543 122345678888888776554 33345668999999987
Q ss_pred CCCccchHHHHHhhhcCccccEEEcCCCC-ccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccc
Q 048833 319 DDEKTSQSFVESCISKSQFLRVLNLSESS-IEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELE 397 (629)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 397 (629)
.. ........+|..++.|++||+++|. +.++|..++++.+||||+++++ .+..+|..+++|.+|.+|++..+..+.
T Consensus 556 ~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 556 SD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred ch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccc
Confidence 52 1222334458889999999999764 6799999999999999999986 789999999999999999999987777
Q ss_pred cCCccccccCcccEEEecCcccccCcccC---CCCCCCCeEeecCCCCcchhhhhCCCCCccceE----ecccCCCCccc
Q 048833 398 ELPKDIKYLVNLRVLVLTTKQKSLQESGI---RSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTL----SIESCPRLISL 470 (629)
Q Consensus 398 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L----~l~~~~~~~~l 470 (629)
.+|..+..|++|++|.+...........+ ..+.+|+.+....... .+...+..+++|+++ .+.+ ......
T Consensus 633 ~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~ 709 (889)
T KOG4658|consen 633 SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEG-CSKRTL 709 (889)
T ss_pred cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcc-ccccee
Confidence 78777778999999999876533332233 4444444444433322 222334444555533 3222 334456
Q ss_pred cccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCC
Q 048833 471 PPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCP 550 (629)
Q Consensus 471 p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 550 (629)
+..+..+.+|+.|.+.+|...+.......... .. ..++.+..+...+|.....+. |. ...++|+.|.+..|.
T Consensus 710 ~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~---~~--~~f~~l~~~~~~~~~~~r~l~-~~--~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 710 ISSLGSLGNLEELSILDCGISEIVIEWEESLI---VL--LCFPNLSKVSILNCHMLRDLT-WL--LFAPHLTSLSLVSCR 781 (889)
T ss_pred ecccccccCcceEEEEcCCCchhhcccccccc---hh--hhHHHHHHHHhhccccccccc-hh--hccCcccEEEEeccc
Confidence 66788899999999999976653321100000 00 013345555555554444332 22 345788888888887
Q ss_pred CCccCCcCCCCCCCcCe----------e----ecccCccCccCCcCCCCCCCcCeEeeeCCCccccccC
Q 048833 551 NFMALPRSLKDLEALET----------L----VIARCPKLSSLPEGMHHVTTLKLLTIGGCPALSERCK 605 (629)
Q Consensus 551 ~~~~l~~~~~~l~~L~~----------L----~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~ 605 (629)
.+++.......+..+.. + ++.+.+.+...|- .++.|..+.+..||++.+.+.
T Consensus 782 ~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 782 LLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL---SFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred ccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc---CccchhheehhcCcccccCcc
Confidence 76665433332222222 2 2222222222332 223377777777777765543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.9e-56 Score=509.04 Aligned_cols=525 Identities=22% Similarity=0.327 Sum_probs=391.0
Q ss_pred HHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhhcccCCCCceeCCCCChhhHHHHHH
Q 048833 21 KVLRYSLKGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVASIMGTRGGTTGFNLQGLPFEDCLSLFM 100 (629)
Q Consensus 21 ~~l~~~L~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~ 100 (629)
..++++|++||+||||||||+ ...|+.+.....++++|||||||||+++++..++.. ++|+|+.|++++||+||+
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~---~~~~v~~l~~~ea~~LF~ 361 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID---HIYEVCLPSNELALEMFC 361 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC---eEEEecCCCHHHHHHHHH
Confidence 467888999999999999975 467998888777788999999999999999876554 799999999999999999
Q ss_pred HhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCCCCHHHHHHHhhhhccccccccCCcchhhhcccccCCh-
Q 048833 101 KCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDSTDEHFWEYVRDNEIWQLEQKESGILPALRLSYDQLPP- 179 (629)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~- 179 (629)
++||+...+ .+++.+++++|+++|+|+|||++++|++|+++ +...|+.+.+.... ..+.++.++|++||++|++
T Consensus 362 ~~Af~~~~~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~---~~~~~I~~~L~~SYd~L~~~ 436 (1153)
T PLN03210 362 RSAFKKNSP-PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN---GLDGKIEKTLRVSYDGLNNK 436 (1153)
T ss_pred HHhcCCCCC-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh---CccHHHHHHHHHhhhccCcc
Confidence 999986443 35789999999999999999999999999976 56788887665432 2356789999999999976
Q ss_pred hhhhhhhhhccCCCCceeChHhHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCCceeecccCCCCceEEEEEeChhH
Q 048833 180 RLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMFGLEVLTFKMHDLM 259 (629)
Q Consensus 180 ~~k~~fl~~~~fp~~~~~~~~~l~~~wi~eg~i~~~~~~~~~~~~~~~~l~~L~~r~ll~~~~~~~~~~~~~~~~mhd~~ 259 (629)
..|.||+++|+||.+..++ .+..|.+.+.... ...+..|+++++++... + ++.|||++
T Consensus 437 ~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~----~----~~~MHdLl 494 (1153)
T PLN03210 437 KDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE----D----IVEMHSLL 494 (1153)
T ss_pred chhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC----C----eEEhhhHH
Confidence 5999999999999886553 3556666553321 12378899999997532 2 68999999
Q ss_pred HHHHHHHhccce-------EEEecC-------CCCCCCcceEEEEEcccCCcchh-hhhccCCCCceEEEEec-------
Q 048833 260 HDLAMLVAKDEF-------LVVNSD-------CQSIPKSVRHLSFAAANASRNDF-SSLLSDLGRVRTICFST------- 317 (629)
Q Consensus 260 ~~~~~~~~~~~~-------~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~------- 317 (629)
++||+.+++++. +..... .......++.+++.........+ ...+..|++|+.|.+..
T Consensus 495 ~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~ 574 (1153)
T PLN03210 495 QEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKK 574 (1153)
T ss_pred HHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccc
Confidence 999999987653 111000 01112234444443322221111 23455556666655543
Q ss_pred ------------------------CCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCcc
Q 048833 318 ------------------------DDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIK 373 (629)
Q Consensus 318 ------------------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~ 373 (629)
+.....+.. + .+.+|+.|++.++.++.+|..+..+++|++|+|++|..+.
T Consensus 575 ~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-----f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 575 EVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-----F-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648 (1153)
T ss_pred cceeecCcchhhcCcccEEEEecCCCCCCCCCc-----C-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence 222222211 1 3467888888888888888888889999999999887788
Q ss_pred ccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcc-cccCcccCCCCCCCCeEeecCCCCcchhhhhCC-
Q 048833 374 KLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQ-KSLQESGIRSLGSLRSLKIFGCRDLEHLFEEID- 451 (629)
Q Consensus 374 ~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~- 451 (629)
.+|. ++.+++|++|++++|..+..+|..++++++|+.|++++|. +...|..+ ++++|+.|++++|..+..+|....
T Consensus 649 ~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~n 726 (1153)
T PLN03210 649 EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTN 726 (1153)
T ss_pred cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCC
Confidence 8886 7888999999999988888999999999999999998864 33333333 677777877777765443332110
Q ss_pred -------------------------------------------------CCCccceEecccCCCCccccccccCCCccce
Q 048833 452 -------------------------------------------------QLSVLRTLSIESCPRLISLPPAIKYLSSLEN 482 (629)
Q Consensus 452 -------------------------------------------------~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 482 (629)
.+++|+.|++++|..+..+|..++++++|+.
T Consensus 727 L~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 727 ISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred cCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 1235666777777777777877888888888
Q ss_pred eeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCC
Q 048833 483 LYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDL 562 (629)
Q Consensus 483 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l 562 (629)
|++++|..+... +.....++|+.|++++|..+..+|.. ..+|+.|++++| .++.+|.++..+
T Consensus 807 L~Ls~C~~L~~L------------P~~~~L~sL~~L~Ls~c~~L~~~p~~-----~~nL~~L~Ls~n-~i~~iP~si~~l 868 (1153)
T PLN03210 807 LEIENCINLETL------------PTGINLESLESLDLSGCSRLRTFPDI-----STNISDLNLSRT-GIEEVPWWIEKF 868 (1153)
T ss_pred EECCCCCCcCee------------CCCCCccccCEEECCCCCcccccccc-----ccccCEeECCCC-CCccChHHHhcC
Confidence 888887654421 11124568888888888887777642 367889999886 578899999999
Q ss_pred CCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCccccc
Q 048833 563 EALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPALSER 603 (629)
Q Consensus 563 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~ 603 (629)
++|+.|++++|+.++.+|..+..+++|+.+++++|++|...
T Consensus 869 ~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 869 SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 99999999999999999988889999999999999988754
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=2e-30 Score=256.25 Aligned_cols=209 Identities=37% Similarity=0.620 Sum_probs=157.3
Q ss_pred hhhhhhhCC-----CCCcHHHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhhc
Q 048833 3 KIINFVTGE-----NQSNLDQLQKVLRYSLKGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVASIMG 77 (629)
Q Consensus 3 ~i~~~~~~~-----~~~~~~~~~~~l~~~L~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~ 77 (629)
+|+..+... ...+.+++...+.+.|+++++||||||||+. ..|+.+...++....||+||||||+++++..+.
T Consensus 69 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~ 146 (287)
T PF00931_consen 69 QILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLG 146 (287)
T ss_dssp HHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHH
T ss_pred cccccccccccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccc
Confidence 445554444 2346788999999999999999999999754 588888888887778999999999999887765
Q ss_pred ccCCCCceeCCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCCCCHHHHHHHhhhhcc
Q 048833 78 TRGGTTGFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDSTDEHFWEYVRDNEIW 157 (629)
Q Consensus 78 ~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~~~~~w~~~~~~~~~ 157 (629)
.. ...|+|++|+.+||++||++.++.......+.....+++|+++|+|+|||++++|++|+.+.+...|+.+.+....
T Consensus 147 ~~--~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~ 224 (287)
T PF00931_consen 147 GT--DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELEN 224 (287)
T ss_dssp SC--EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHH
T ss_pred cc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 31 3789999999999999999999876522234556789999999999999999999999766566778877654333
Q ss_pred ccc---cccCCcchhhhcccccCChhhhhhhhhhccCCCCceeChHhHHHHHHHcCCcccC
Q 048833 158 QLE---QKESGILPALRLSYDQLPPRLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSH 215 (629)
Q Consensus 158 ~~~---~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~fp~~~~~~~~~l~~~wi~eg~i~~~ 215 (629)
... .....++.++.+||+.||++.|.||++||+||+++.++++.++++|+++|+++..
T Consensus 225 ~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 225 SLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 221 1346788899999999999999999999999999999999999999999998764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=3.2e-24 Score=247.58 Aligned_cols=331 Identities=18% Similarity=0.196 Sum_probs=159.9
Q ss_pred cceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcc-ccccccCCCCccc
Q 048833 284 SVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIE-VCSRKMGNLKHMR 362 (629)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~l~~L~ 362 (629)
.++.+.+..+.....-....+..+++|+.|++++|.+..... ...+++|++|++++|.+. .+|..++++++|+
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p------~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP------RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC------ccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 344444444443322111222345555555555544332111 123444555555555543 3444455555555
Q ss_pred eeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCccccc-CcccCCCCCCCCeEeecCCC
Q 048833 363 YLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSL-QESGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 363 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~ 441 (629)
+|++++|.....+|..++++++|++|++++|.....+|..++.+++|++|++++|.+.. .+..++.+++|+.|++++|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 55555554334455555555555555555554444455555555555555555554432 23344555555555555554
Q ss_pred CcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccc----------cccC---CCCCCCC
Q 048833 442 DLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNM----------EIEG---EGSHHDR 508 (629)
Q Consensus 442 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~----------~~~~---~~~~~~~ 508 (629)
....+|..++.+++|+.|++++|.....+|..+..+++|++|++++|......... .+.. .+.....
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 44444455555555555555554444444444555555555555544321100000 0000 0001111
Q ss_pred CCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCC
Q 048833 509 KNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTT 588 (629)
Q Consensus 509 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 588 (629)
....++|+.|++.++.-...+|.++ ..+++|+.|++++|.....+|.++..+++|+.|++++|.....+|..+..+++
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 2234456666666554444455544 45566666666666555556666666666666666666555566666666777
Q ss_pred cCeEeeeCCCccccccCCCCCCCCCcccCCCceeeCCcc
Q 048833 589 LKLLTIGGCPALSERCKPPTGEDWPKISHIPQVYLDGEM 627 (629)
Q Consensus 589 L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~v~~~~~~ 627 (629)
|+.|++++|.-.... ...+..+..+..+.+.++.
T Consensus 406 L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 406 LRRVRLQDNSFSGEL-----PSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CCEEECcCCEeeeEC-----ChhHhcCCCCCEEECcCCc
Confidence 777777777532211 1123344555555555543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=9.7e-24 Score=243.54 Aligned_cols=310 Identities=19% Similarity=0.189 Sum_probs=184.2
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcc-ccccccCCCCcc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIE-VCSRKMGNLKHM 361 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~l~~L 361 (629)
..++.+.+..+..... .+..+..+++|+.|++++|...... +..+.++++|++|++++|.+. .+|..+.++++|
T Consensus 140 ~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 140 PNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKI----PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred CCCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccC----ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 3566666666555432 3455666777777777766544322 223556677777777777665 456666777777
Q ss_pred ceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCccccc-CcccCCCCCCCCeEeecCC
Q 048833 362 RYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSL-QESGIRSLGSLRSLKIFGC 440 (629)
Q Consensus 362 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~ 440 (629)
++|++++|.....+|..++++++|++|++++|.....+|..++++++|+.|++++|.+.. .+..+..+++|+.|++++|
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 777777665555667777777777777777765555667677777777777777766543 3445666677777777776
Q ss_pred CCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccc----------cccCC---CCCCC
Q 048833 441 RDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNM----------EIEGE---GSHHD 507 (629)
Q Consensus 441 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~----------~~~~~---~~~~~ 507 (629)
.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|......... .+... +....
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 655556666667777777777666665666666666777777777666432111000 00000 00001
Q ss_pred CCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCC
Q 048833 508 RKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVT 587 (629)
Q Consensus 508 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~ 587 (629)
.....+.|+.|++.++.-...+|.++ ..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..++
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence 11122344555555443333444444 4456666666666655555666666667777777776655555565555667
Q ss_pred CcCeEeeeCCCc
Q 048833 588 TLKLLTIGGCPA 599 (629)
Q Consensus 588 ~L~~L~l~~c~~ 599 (629)
+|+.|++++|.-
T Consensus 453 ~L~~L~L~~n~~ 464 (968)
T PLN00113 453 SLQMLSLARNKF 464 (968)
T ss_pred CCcEEECcCcee
Confidence 777777777764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.6e-24 Score=214.44 Aligned_cols=299 Identities=22% Similarity=0.286 Sum_probs=172.3
Q ss_pred ceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccc-cCCCCccce
Q 048833 285 VRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRK-MGNLKHMRY 363 (629)
Q Consensus 285 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~ 363 (629)
+|.+.+..+......++..+..+..|..|+++.|.+...+.. +...+++-+|+|++|+|+.+|.. +.+++.|-+
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-----LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-----LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh-----hhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 344444444444444555555555566666655554433322 33445555666666666555544 445555556
Q ss_pred eecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccc--cCcccCCCCCCCCeEeecCCC
Q 048833 364 LDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKS--LQESGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 364 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~ 441 (629)
|||++| .+..+|+.+..|.+|++|+|++|....---..+..+++|++|++++.+-+ ..|..+..+.+|..++++.|.
T Consensus 155 LDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 155 LDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 666544 45555555555666666666555321111111224455555555544332 224445555555555555443
Q ss_pred CcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeec
Q 048833 442 DLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIM 521 (629)
Q Consensus 442 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 521 (629)
+..+|+.+-++++|+.|++++|. ++.+....+...+|++|+++.|....++ ......++|+.|...
T Consensus 234 -Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP------------~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 234 -LPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLP------------DAVCKLTKLTKLYAN 299 (1255)
T ss_pred -CCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccch------------HHHhhhHHHHHHHhc
Confidence 34455555555555555555543 3334444444455555555554322211 112233456655554
Q ss_pred ccc-CcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCcc
Q 048833 522 EIT-QLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPAL 600 (629)
Q Consensus 522 ~~~-~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 600 (629)
++. .+..+|+.+ +.+.+|+.+...+| .++-+|+++..|+.|+.|.|+. +.+-.+|+++.-++.|+.|++..||+|
T Consensus 300 ~NkL~FeGiPSGI--GKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 300 NNKLTFEGIPSGI--GKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cCcccccCCccch--hhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCc
Confidence 432 456677777 77888888887765 6888999999999999999997 578889999999999999999999988
Q ss_pred ccccCCC
Q 048833 601 SERCKPP 607 (629)
Q Consensus 601 ~~~~~~~ 607 (629)
.--+++.
T Consensus 376 VMPPKP~ 382 (1255)
T KOG0444|consen 376 VMPPKPN 382 (1255)
T ss_pred cCCCCcc
Confidence 7544443
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=6.8e-21 Score=219.91 Aligned_cols=268 Identities=26% Similarity=0.422 Sum_probs=167.6
Q ss_pred HhhhcCccccEEEcCCCCcc-------ccccccCCCC-ccceeecccCCCccccchhhccCCCccEeccCCccccccCCc
Q 048833 330 SCISKSQFLRVLNLSESSIE-------VCSRKMGNLK-HMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPK 401 (629)
Q Consensus 330 ~~~~~~~~L~~L~l~~~~~~-------~l~~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~ 401 (629)
..|..|++|+.|.+..+... .+|..+..++ +|++|.+.++ .+..+|..+ .+.+|+.|++++| .+..+|.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGS-KLEKLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCc-ccccccc
Confidence 44667777777777544321 3455555443 4777777665 456666655 4566777777665 4666666
Q ss_pred cccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccc
Q 048833 402 DIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLE 481 (629)
Q Consensus 402 ~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 481 (629)
++..+++|+.|+++++......+.+..+++|+.|++++|..+..+|..++.+++|+.|++++|..++.+|..+ ++++|+
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 6666777777777665432222346666777777777776666666667777777777777766666666654 566666
Q ss_pred eeeccccccccccc---------------------cccccCCCCC------------------CCCCCCCCceeeEeecc
Q 048833 482 NLYLARCESLDLNL---------------------NMEIEGEGSH------------------HDRKNTRPHLRRVFIME 522 (629)
Q Consensus 482 ~L~l~~~~~l~~~~---------------------~~~~~~~~~~------------------~~~~~~~~~L~~L~l~~ 522 (629)
.|++++|..+.... .......... ......+++|+.|.+++
T Consensus 708 ~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred EEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence 66666664332110 0000000000 00011234777888888
Q ss_pred ccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCcc--------------------CCcC
Q 048833 523 ITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSS--------------------LPEG 582 (629)
Q Consensus 523 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~--------------------lp~~ 582 (629)
++.+..+|..+ ..+++|+.|++++|..++.+|... .+++|+.|++++|..+.. +|..
T Consensus 788 n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s 864 (1153)
T PLN03210 788 IPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW 864 (1153)
T ss_pred CCCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHH
Confidence 87777788776 677888888888888888887655 677777777777755543 4445
Q ss_pred CCCCCCcCeEeeeCCCcccccc
Q 048833 583 MHHVTTLKLLTIGGCPALSERC 604 (629)
Q Consensus 583 ~~~l~~L~~L~l~~c~~l~~~~ 604 (629)
+..+++|+.|++++|++|....
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccC
Confidence 5667888888888888887643
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=3e-24 Score=212.57 Aligned_cols=294 Identities=25% Similarity=0.352 Sum_probs=241.8
Q ss_pred cceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccce
Q 048833 284 SVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRY 363 (629)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 363 (629)
++.++++..+.... +.+.++.++.||++.+..|++.... ++.-+..+..|.+|||++|.+.++|..+..-+++.+
T Consensus 56 kLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~LKnsG---iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNNLKNSG---IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccccccCC---CCchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 45566666555433 3577889999999999887765322 233356789999999999999999999999999999
Q ss_pred eecccCCCccccchh-hccCCCccEeccCCccccccCCccccccCcccEEEecCcccccC-cccCCCCCCCCeEeecCCC
Q 048833 364 LDLSRNSKIKKLPKS-ICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQ-ESGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 364 L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~ 441 (629)
|+|++| .+..+|.. +-+|+.|-.|||++| .+..+|+.+..|.+|+.|.+++|.+... ...+..|++|+.|.+++.+
T Consensus 131 LNLS~N-~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 131 LNLSYN-NIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEcccC-ccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 999987 68888876 448999999999987 8999999999999999999999987543 3456678888999998866
Q ss_pred C-cchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEee
Q 048833 442 D-LEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFI 520 (629)
Q Consensus 442 ~-~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 520 (629)
. +..+|.++..+.||+.++++.| .+..+|..+.++++|+.|+|++|....+.... ..-.+|++|++
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~------------~~W~~lEtLNl 275 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTE------------GEWENLETLNL 275 (1255)
T ss_pred chhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccH------------HHHhhhhhhcc
Confidence 4 5678999999999999999775 58889999999999999999999765543211 11126888888
Q ss_pred ccccCcccchhhhhcCCCCCccEEEecCCCC-CccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCc
Q 048833 521 MEITQLLELPQWLLQGSTDTLRDLFIVSCPN-FMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPA 599 (629)
Q Consensus 521 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 599 (629)
+. ++++.+|..+ ..++.|+.|.+.+|.. ++.+|..++.+.+|+.+...+ +.++-+|.++..++.|+.|.++.|..
T Consensus 276 Sr-NQLt~LP~av--cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 276 SR-NQLTVLPDAV--CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred cc-chhccchHHH--hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccce
Confidence 87 4788899888 6789999999988764 668999999999999999998 68999999999999999999998875
Q ss_pred cc
Q 048833 600 LS 601 (629)
Q Consensus 600 l~ 601 (629)
++
T Consensus 352 iT 353 (1255)
T KOG0444|consen 352 IT 353 (1255)
T ss_pred ee
Confidence 43
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=3.5e-21 Score=189.68 Aligned_cols=304 Identities=20% Similarity=0.223 Sum_probs=186.1
Q ss_pred CCCCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccch-------------------HHHHHhhhcCccccE
Q 048833 280 SIPKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQ-------------------SFVESCISKSQFLRV 340 (629)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-------------------~~~~~~~~~~~~L~~ 340 (629)
.+|+..+.+.+..+.....++ ..+.++++|+.+.+..|.+..++. ..-...++.++.||+
T Consensus 75 ~lp~~t~~LdlsnNkl~~id~-~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNKLSHIDF-EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred cCccceeeeeccccccccCcH-HHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 455666666666666655543 234455555555544443332211 111233556677888
Q ss_pred EEcCCCCccccccc-cCCCCccceeecccCCCcccc-chhhccCCCccEeccCCccccccCCc-cccccCcccEEEecCc
Q 048833 341 LNLSESSIEVCSRK-MGNLKHMRYLDLSRNSKIKKL-PKSICELQSLETLDLAGCLELEELPK-DIKYLVNLRVLVLTTK 417 (629)
Q Consensus 341 L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~ 417 (629)
|||+.|.+..+|.. +..-.++++|+|++|. ++.+ ...|..+.+|-+|.|++| .+..+|. .|.+|++|+.|++..|
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccc
Confidence 88888888877653 6666788888888774 4433 455777888888888886 5555554 5667888888888888
Q ss_pred ccccC-cccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeecccccccccccc
Q 048833 418 QKSLQ-ESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLN 496 (629)
Q Consensus 418 ~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~ 496 (629)
.+... ...|..+++|+.|.+..|....---..|-.+.++++|+|..|.....-..|+.+++.|+.|++++|..-.+.
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih-- 309 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH-- 309 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee--
Confidence 77654 456677777777777766532222223445666666666655433222334556666666666665432211
Q ss_pred ccccCCCCCCCCCCCCCceeeEeeccc-----------------------cCcccchhhhhcCCCCCccEEEecCCCC--
Q 048833 497 MEIEGEGSHHDRKNTRPHLRRVFIMEI-----------------------TQLLELPQWLLQGSTDTLRDLFIVSCPN-- 551 (629)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-----------------------~~l~~~~~~~~~~~~~~L~~L~l~~~~~-- 551 (629)
...+..+++|+.|+|+.+ +.+..+....+ ..+.+|+.|+|++|..
T Consensus 310 ---------~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af-~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 310 ---------IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF-VGLSSLHKLDLRSNELSW 379 (873)
T ss_pred ---------cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH-HHhhhhhhhcCcCCeEEE
Confidence 122223334444444432 13333333332 3467888888887764
Q ss_pred -CccCCcCCCCCCCcCeeecccCccCccCC-cCCCCCCCcCeEeeeCCCc
Q 048833 552 -FMALPRSLKDLEALETLVIARCPKLSSLP-EGMHHVTTLKLLTIGGCPA 599 (629)
Q Consensus 552 -~~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~ 599 (629)
+++-...|..+++|++|.+.+ ++++++| ..|.+++.|+.|++.+|+-
T Consensus 380 ~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 380 CIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred EEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcc
Confidence 333344567799999999999 5788887 4678899999999999983
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=6.8e-20 Score=180.73 Aligned_cols=178 Identities=24% Similarity=0.275 Sum_probs=141.8
Q ss_pred CCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCcccc-chhhccCCCcc
Q 048833 308 GRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLE 386 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~ 386 (629)
+..++|++++|.+......+ |.++++|+.+++..|.++.+|.......+|+.|+|.+| .+..+ ...+..++.|+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~----f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEF----FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALR 152 (873)
T ss_pred cceeeeeccccccccCcHHH----HhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhh
Confidence 56788999998877665544 77899999999999999999988877889999999987 45544 45678899999
Q ss_pred EeccCCccccccCCc-cccccCcccEEEecCcccccC-cccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccC
Q 048833 387 TLDLAGCLELEELPK-DIKYLVNLRVLVLTTKQKSLQ-ESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESC 464 (629)
Q Consensus 387 ~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 464 (629)
.|||+.| .+.++|. ++..-.++++|++++|.++.. ...|..+.+|..|.++.|....-.+..|..+++|+.|+|..|
T Consensus 153 slDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 153 SLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 9999997 6777664 456668899999999998765 456888889999999998865555567888999999999876
Q ss_pred CCCccccccccCCCccceeeccccccc
Q 048833 465 PRLISLPPAIKYLSSLENLYLARCESL 491 (629)
Q Consensus 465 ~~~~~lp~~~~~l~~L~~L~l~~~~~l 491 (629)
..-..-...|..+++|+.|.+..|+..
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 532222456778888888888877643
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=3.8e-20 Score=174.63 Aligned_cols=243 Identities=30% Similarity=0.390 Sum_probs=121.8
Q ss_pred cCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEE
Q 048833 334 KSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLV 413 (629)
Q Consensus 334 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 413 (629)
++..|.+|+++++.+.++|+.++.+..++.++.+.| .+..+|..++.+..|..|+.++| ...++|.+++.+..|..++
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhh
Confidence 444445555555555555555555555555555444 34444544555555555555443 3444444555555555555
Q ss_pred ecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccc
Q 048833 414 LTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDL 493 (629)
Q Consensus 414 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~ 493 (629)
..+|.+...|..+.++.+|..+++.+|. +..+|+..-.++.|++|+... +.++.+|..++.+.+|+.|++..|....
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~- 220 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRF- 220 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhccccc-
Confidence 5555544444444444444444444443 222333322344455544432 2344445445555555555554443221
Q ss_pred cccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccC
Q 048833 494 NLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARC 573 (629)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c 573 (629)
.+++.+|..|+.+..+. +.+..+|.... ..++++..|++++| .++++|..+.-+++|++|++++
T Consensus 221 ------------lPef~gcs~L~Elh~g~-N~i~~lpae~~-~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN- 284 (565)
T KOG0472|consen 221 ------------LPEFPGCSLLKELHVGE-NQIEMLPAEHL-KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN- 284 (565)
T ss_pred ------------CCCCCccHHHHHHHhcc-cHHHhhHHHHh-cccccceeeecccc-ccccCchHHHHhhhhhhhcccC-
Confidence 11222333344444333 24444444432 34566666676665 3666666666666677777766
Q ss_pred ccCccCCcCCCCCCCcCeEeeeCCC
Q 048833 574 PKLSSLPEGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 574 ~~l~~lp~~~~~l~~L~~L~l~~c~ 598 (629)
+.+..+|..++++ .|+.|.+.|+|
T Consensus 285 N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 285 NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred CccccCCcccccc-eeeehhhcCCc
Confidence 4566666666666 56666666666
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=1.6e-19 Score=170.42 Aligned_cols=272 Identities=24% Similarity=0.307 Sum_probs=180.2
Q ss_pred hhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccccccc-CCCCccceeecccCCCccccchhh
Q 048833 301 SSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKM-GNLKHMRYLDLSRNSKIKKLPKSI 379 (629)
Q Consensus 301 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~lp~~~ 379 (629)
+..+..+.+|..|.+..|.....+ .|++|..|+.|.+..|.++.+|... .++.++..||++.| .+++.|+++
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lP------ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~ 271 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLP------EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEI 271 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCC------CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHH
Confidence 455566666666666666554333 2667777888888888887777764 37788888888876 678888888
Q ss_pred ccCCCccEeccCCccccccCCccccccCcccEEEecCcccccC-------------------------------------
Q 048833 380 CELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQ------------------------------------- 422 (629)
Q Consensus 380 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~------------------------------------- 422 (629)
+.+.+|+.||+++| .+..+|.+++++ .|+.|-+.+|.+...
T Consensus 272 clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 272 CLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 88888888888875 677788888888 777777776643100
Q ss_pred -----cccCCCCCCCCeEeecCCCC-------------------------cchhhhhCCCCCccceEecccCCCCccccc
Q 048833 423 -----ESGIRSLGSLRSLKIFGCRD-------------------------LEHLFEEIDQLSVLRTLSIESCPRLISLPP 472 (629)
Q Consensus 423 -----~~~~~~l~~L~~L~l~~~~~-------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~ 472 (629)
.+....+.+.+.|++++-+. +..+|..+..++.+.+.-+..++....+|.
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~ 429 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL 429 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH
Confidence 00111222344444333211 233444444455555444445566777777
Q ss_pred cccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCC
Q 048833 473 AIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNF 552 (629)
Q Consensus 473 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 552 (629)
.+..+++|..|++++|..-+++ .+....-.|+.++++.+ ++..+|... .....++.+-.+++ .+
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~LP------------~e~~~lv~Lq~LnlS~N-rFr~lP~~~--y~lq~lEtllas~n-qi 493 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLNDLP------------EEMGSLVRLQTLNLSFN-RFRMLPECL--YELQTLETLLASNN-QI 493 (565)
T ss_pred HHHhhhcceeeecccchhhhcc------------hhhhhhhhhheeccccc-ccccchHHH--hhHHHHHHHHhccc-cc
Confidence 7888888888888876432222 22222335777777764 777788766 33344555444444 56
Q ss_pred ccCCcC-CCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCC
Q 048833 553 MALPRS-LKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 553 ~~l~~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 598 (629)
..++.. +++|.+|..|++.+ +.+.++|..++++++|++|++.|+|
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 766655 89999999999998 5899999999999999999999999
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=6.7e-15 Score=159.29 Aligned_cols=223 Identities=20% Similarity=0.313 Sum_probs=110.6
Q ss_pred cccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecC
Q 048833 337 FLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTT 416 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~ 416 (629)
.|+.|++++|.+..+|..+. .+|++|++++| .+..+|..+. .+|+.|+|++| .+..+|..+. .+|+.|++++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFH 271 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence 34555555555555544332 34555555544 3444444332 24555555554 3344444332 3455555555
Q ss_pred cccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeecccccccccccc
Q 048833 417 KQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLN 496 (629)
Q Consensus 417 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~ 496 (629)
|.+...+..+. ++|+.|++++|. +..+|..+. ++|+.|++++|. +..+|..+ .++|+.|++++|....++.
T Consensus 272 N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~- 342 (754)
T PRK15370 272 NKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETL--PPGLKTLEAGENALTSLPA- 342 (754)
T ss_pred CccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCccc--cccceeccccCCccccCCh-
Confidence 55444333221 345555555543 233333221 345555555443 33344332 2455555555553221110
Q ss_pred ccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccC
Q 048833 497 MEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKL 576 (629)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l 576 (629)
.-+++|+.|+++++ .+..+|..+ .++|+.|++++|. +..+|..+. ++|+.|++++| .+
T Consensus 343 -------------~l~~sL~~L~Ls~N-~L~~LP~~l----p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N-~L 400 (754)
T PRK15370 343 -------------SLPPELQVLDVSKN-QITVLPETL----PPTITTLDVSRNA-LTNLPENLP--AALQIMQASRN-NL 400 (754)
T ss_pred -------------hhcCcccEEECCCC-CCCcCChhh----cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccC-Cc
Confidence 00135556666554 344555433 2567777777764 556666543 36777777774 55
Q ss_pred ccCCcCC----CCCCCcCeEeeeCCC
Q 048833 577 SSLPEGM----HHVTTLKLLTIGGCP 598 (629)
Q Consensus 577 ~~lp~~~----~~l~~L~~L~l~~c~ 598 (629)
..+|..+ ..++.+..|++.+||
T Consensus 401 ~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 401 VRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ccCchhHHHHhhcCCCccEEEeeCCC
Confidence 6666543 334667778887777
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=3.2e-14 Score=153.03 Aligned_cols=234 Identities=22% Similarity=0.272 Sum_probs=143.7
Q ss_pred CceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEe
Q 048833 309 RVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETL 388 (629)
Q Consensus 309 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 388 (629)
+++.|.+..|.+...+. .+++|++|++++|.++.+|.. .++|+.|++++| .+..+|.. ..+|+.|
T Consensus 223 ~L~~L~L~~N~Lt~LP~--------lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~l---p~~L~~L 287 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN-PLTHLPAL---PSGLCKL 287 (788)
T ss_pred CCCEEEccCCcCCCCCC--------CCCCCcEEEecCCccCcccCc---ccccceeeccCC-chhhhhhc---hhhcCEE
Confidence 56777777766654322 245677777777777777643 356777777766 45556552 2456677
Q ss_pred ccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCc
Q 048833 389 DLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLI 468 (629)
Q Consensus 389 ~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 468 (629)
++++| .+..+|. .+++|+.|++++|.+...+.. ..+|+.|++++|. +..+|. ...+|+.|++++|. ++
T Consensus 288 ~Ls~N-~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~---lp~~Lq~LdLS~N~-Ls 355 (788)
T PRK15387 288 WIFGN-QLTSLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPT---LPSGLQELSVSDNQ-LA 355 (788)
T ss_pred ECcCC-ccccccc---cccccceeECCCCccccCCCC---cccccccccccCc-cccccc---cccccceEecCCCc-cC
Confidence 77776 5566664 246677777777776655432 2346666776665 334442 12467777776653 45
Q ss_pred cccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecC
Q 048833 469 SLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVS 548 (629)
Q Consensus 469 ~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 548 (629)
.+|.. ..+|+.|++++|....++ .....|+.|+++++ .+..+|.. .++|+.|++++
T Consensus 356 ~LP~l---p~~L~~L~Ls~N~L~~LP---------------~l~~~L~~LdLs~N-~Lt~LP~l-----~s~L~~LdLS~ 411 (788)
T PRK15387 356 SLPTL---PSELYKLWAYNNRLTSLP---------------ALPSGLKELIVSGN-RLTSLPVL-----PSELKELMVSG 411 (788)
T ss_pred CCCCC---CcccceehhhccccccCc---------------ccccccceEEecCC-cccCCCCc-----ccCCCEEEccC
Confidence 56643 245666777665422111 01235777777664 45555532 25678888887
Q ss_pred CCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCC
Q 048833 549 CPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 549 ~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 598 (629)
|. ++.+|.. ..+|+.|++++| .++.+|..+..+++|+.|++++|+
T Consensus 412 N~-LssIP~l---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 412 NR-LTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred Cc-CCCCCcc---hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 74 5666653 346777888774 577788777778888888888877
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=6.4e-17 Score=135.25 Aligned_cols=166 Identities=28% Similarity=0.402 Sum_probs=127.8
Q ss_pred hccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccC
Q 048833 303 LLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICEL 382 (629)
Q Consensus 303 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 382 (629)
.+.+++.+..|.++.|.+...+.. +..+.+|++|++.+|.++++|.+++.+++|+.|+++.| .+..+|..|+.+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppn-----ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~ 101 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPN-----IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSF 101 (264)
T ss_pred cccchhhhhhhhcccCceeecCCc-----HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCC
Confidence 345667777777777766654433 55677888888888888888888888888888888766 577788888888
Q ss_pred CCccEeccCCccc-cccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEec
Q 048833 383 QSLETLDLAGCLE-LEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSI 461 (629)
Q Consensus 383 ~~L~~L~l~~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 461 (629)
+-|+.|||.+|.. -..+|..|-.++.|+.|+++.|.+...|+.++++++|+.|.+..|. +-.+|..++.++.|++|.+
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhc
Confidence 8888888887642 2357888888888888888888888888888888888888888876 4467888888888888888
Q ss_pred ccCCCCccccccccC
Q 048833 462 ESCPRLISLPPAIKY 476 (629)
Q Consensus 462 ~~~~~~~~lp~~~~~ 476 (629)
.+| +++.+|..+++
T Consensus 181 qgn-rl~vlppel~~ 194 (264)
T KOG0617|consen 181 QGN-RLTVLPPELAN 194 (264)
T ss_pred ccc-eeeecChhhhh
Confidence 775 46666665554
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.4e-16 Score=133.21 Aligned_cols=152 Identities=28% Similarity=0.383 Sum_probs=137.3
Q ss_pred cCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEE
Q 048833 334 KSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLV 413 (629)
Q Consensus 334 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 413 (629)
.+.++..|.+++|++..+|+.+..+.+|+.|++.+| .++.+|..++.+++|+.|+++-| .+..+|.+|+.++.|+.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 566788899999999999999999999999999866 79999999999999999999986 7889999999999999999
Q ss_pred ecCcccc--cCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccc
Q 048833 414 LTTKQKS--LQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 414 l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 489 (629)
+++|.+. ..|..|..|+.|+.|.+++|. .+.+|..++++++|+.|.++.|. +-++|..++.+..|++|++.+|.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccce
Confidence 9999875 346677888999999999986 78899999999999999998865 66789999999999999999874
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=6.5e-15 Score=148.15 Aligned_cols=92 Identities=18% Similarity=0.113 Sum_probs=43.4
Q ss_pred hhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccc-------cccccCCCCccceeecccCCCccc
Q 048833 302 SLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEV-------CSRKMGNLKHMRYLDLSRNSKIKK 374 (629)
Q Consensus 302 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------l~~~~~~l~~L~~L~l~~~~~~~~ 374 (629)
..+..+..++.+.+.++.........+...+...+.|+.++++++.+.. ++..+..+++|++|++++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3444445566666665554433333334444455556666665554431 122334455555555555533323
Q ss_pred cchhhccCCC---ccEeccCCc
Q 048833 375 LPKSICELQS---LETLDLAGC 393 (629)
Q Consensus 375 lp~~~~~l~~---L~~L~l~~~ 393 (629)
.+..+..+.+ |++|++++|
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCC
Confidence 3333333333 555555554
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=9.7e-14 Score=149.35 Aligned_cols=243 Identities=20% Similarity=0.158 Sum_probs=179.7
Q ss_pred CCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCcc
Q 048833 282 PKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHM 361 (629)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L 361 (629)
+..++.+.+..+.+... + ..+++|++|++++|.+...+. ..++|+.|++++|.+..+|... .+|
T Consensus 221 ~~~L~~L~L~~N~Lt~L--P---~lp~~Lk~LdLs~N~LtsLP~--------lp~sL~~L~Ls~N~L~~Lp~lp---~~L 284 (788)
T PRK15387 221 PAHITTLVIPDNNLTSL--P---ALPPELRTLEVSGNQLTSLPV--------LPPGLLELSIFSNPLTHLPALP---SGL 284 (788)
T ss_pred hcCCCEEEccCCcCCCC--C---CCCCCCcEEEecCCccCcccC--------cccccceeeccCCchhhhhhch---hhc
Confidence 34677888777766543 2 235889999999998776532 2367999999999999888643 578
Q ss_pred ceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCC
Q 048833 362 RYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 362 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 441 (629)
+.|++++| .+..+|.. +++|+.|++++| .+..+|.. ..+|+.|.+++|.+...|. ...+|+.|++++|.
T Consensus 285 ~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~N~ 353 (788)
T PRK15387 285 CKLWIFGN-QLTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNNQLTSLPT---LPSGLQELSVSDNQ 353 (788)
T ss_pred CEEECcCC-cccccccc---ccccceeECCCC-ccccCCCC---cccccccccccCccccccc---cccccceEecCCCc
Confidence 89999988 67788863 478999999997 66677753 3457788899998876553 22589999999986
Q ss_pred CcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeec
Q 048833 442 DLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIM 521 (629)
Q Consensus 442 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 521 (629)
+..+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++|....++ ....+|+.|+++
T Consensus 354 -Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~LP---------------~l~s~L~~LdLS 410 (788)
T PRK15387 354 -LASLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLP---------------VLPSELKELMVS 410 (788)
T ss_pred -cCCCCCC---Ccccceehhhccc-cccCccc---ccccceEEecCCcccCCC---------------CcccCCCEEEcc
Confidence 4556643 3578888997764 5667764 357999999988533221 112478999999
Q ss_pred cccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCc
Q 048833 522 EITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPE 581 (629)
Q Consensus 522 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 581 (629)
++ .+..+|.. ..+|+.|++++|. ++.+|..+..+++|+.|+|++|+.-...|.
T Consensus 411 ~N-~LssIP~l-----~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 411 GN-RLTSLPML-----PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CC-cCCCCCcc-----hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 86 56777753 3578899999875 789999999999999999999876555444
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.50 E-value=1.7e-15 Score=158.04 Aligned_cols=175 Identities=21% Similarity=0.269 Sum_probs=108.4
Q ss_pred CCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCcc
Q 048833 307 LGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLE 386 (629)
Q Consensus 307 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 386 (629)
..++++++++.+.+...+ . .+..+.+|..+...+|.+..+|..+....+|++|+...| .+..+|....+++.|+
T Consensus 240 p~nl~~~dis~n~l~~lp-~----wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~ 313 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLP-E----WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLR 313 (1081)
T ss_pred cccceeeecchhhhhcch-H----HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceee
Confidence 345666666665555433 2 255666677777777777666666666677777776665 5666666666677777
Q ss_pred EeccCCccccccCCcccc-ccC-cccEEEecCcccccCcc-cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEeccc
Q 048833 387 TLDLAGCLELEELPKDIK-YLV-NLRVLVLTTKQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIES 463 (629)
Q Consensus 387 ~L~l~~~~~~~~lp~~i~-~l~-~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 463 (629)
+|+|..| .+..+|..+- .+. .|+.|+.+.+.+...+. .=..++.|+.|.+.+|.......+.+.++++|+.|++++
T Consensus 314 tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 314 TLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred eeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 7777665 5666665331 111 24555555554443321 122445677777777776665566677778888888877
Q ss_pred CCCCcccccc-ccCCCccceeeccccc
Q 048833 464 CPRLISLPPA-IKYLSSLENLYLARCE 489 (629)
Q Consensus 464 ~~~~~~lp~~-~~~l~~L~~L~l~~~~ 489 (629)
|. +..+|+. +.++..|++|+|+||.
T Consensus 393 Nr-L~~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 393 NR-LNSFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred cc-cccCCHHHHhchHHhHHHhcccch
Confidence 53 5666654 5677777888888764
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=9.3e-14 Score=150.47 Aligned_cols=222 Identities=22% Similarity=0.307 Sum_probs=171.9
Q ss_pred ccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEec
Q 048833 336 QFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLT 415 (629)
Q Consensus 336 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~ 415 (629)
.+...|+++++.+..+|..+. ++|+.|++++| .+..+|..+. .+|++|++++| .+..+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECc
Confidence 457889999999999998764 58999999987 6888998664 69999999997 6778887654 579999999
Q ss_pred CcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccc
Q 048833 416 TKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNL 495 (629)
Q Consensus 416 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~ 495 (629)
+|.+...|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|. ++.+|..+. ++|+.|++++|....++.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPE 321 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCc
Confidence 999887665543 589999999876 556777654 589999998874 667776543 579999999875432210
Q ss_pred cccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCcc
Q 048833 496 NMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPK 575 (629)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~ 575 (629)
...++|+.|.+.++ .++.+|..+ .++|+.|++++|. +..+|..+. ++|+.|+|++| .
T Consensus 322 --------------~l~~sL~~L~Ls~N-~Lt~LP~~l----~~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N-~ 378 (754)
T PRK15370 322 --------------TLPPGLKTLEAGEN-ALTSLPASL----PPELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRN-A 378 (754)
T ss_pred --------------cccccceeccccCC-ccccCChhh----cCcccEEECCCCC-CCcCChhhc--CCcCEEECCCC-c
Confidence 11257999999886 567777654 3689999999985 677887653 69999999996 6
Q ss_pred CccCCcCCCCCCCcCeEeeeCCC
Q 048833 576 LSSLPEGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 576 l~~lp~~~~~l~~L~~L~l~~c~ 598 (629)
+..+|..+. ++|+.|++++|.
T Consensus 379 Lt~LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 379 LTNLPENLP--AALQIMQASRNN 399 (754)
T ss_pred CCCCCHhHH--HHHHHHhhccCC
Confidence 778887642 479999999986
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=6e-15 Score=154.03 Aligned_cols=273 Identities=23% Similarity=0.291 Sum_probs=167.2
Q ss_pred ceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEec
Q 048833 310 VRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLD 389 (629)
Q Consensus 310 l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 389 (629)
+..|++..|.+-..+..+.. +.-.|+.|+++++.+..+|..+..+.+|+.|+++.| .+...|...+++.+|++|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~----~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~ln 97 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVE----KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLN 97 (1081)
T ss_pred HHhhhccccccccCchHHhh----heeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhhe
Confidence 44555555544433333322 233377778887777777777777777888887765 6777777777777888887
Q ss_pred cCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCC-------------------CCcchhhhhC
Q 048833 390 LAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGC-------------------RDLEHLFEEI 450 (629)
Q Consensus 390 l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------~~~~~~~~~~ 450 (629)
|.+| .+..+|.++..+.+|++|++++|.+...|..+..++.+..+..++| .....++..+
T Consensus 98 L~~n-~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 98 LKNN-RLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred eccc-hhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch
Confidence 7764 6777777777788888888877777666655555555555555554 2223333333
Q ss_pred CCCCccceEecccCCCCccccccccCCCccceeecccccccccccccc------ccCCCCCCCCCCCCC-ceeeEeeccc
Q 048833 451 DQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNME------IEGEGSHHDRKNTRP-HLRRVFIMEI 523 (629)
Q Consensus 451 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~------~~~~~~~~~~~~~~~-~L~~L~l~~~ 523 (629)
..+++ .|+++.|... . ..+..+.+|+.|....|....+...+. +.............| +|+.++++.
T Consensus 177 ~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~- 250 (1081)
T KOG0618|consen 177 YNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISH- 250 (1081)
T ss_pred hhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecch-
Confidence 33333 4666655433 1 123334444444444332222111110 000001111111222 677777765
Q ss_pred cCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCC
Q 048833 524 TQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 524 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 598 (629)
..+..+|.|+ ..+.+|+.++...|. +..+|..+....+|+.|.+..| .++.+|...+.+.+|++|++..+.
T Consensus 251 n~l~~lp~wi--~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 251 NNLSNLPEWI--GACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred hhhhcchHHH--HhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcc
Confidence 5778888888 778899999888774 5777777777788888888874 677788777778888888887664
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.39 E-value=4.1e-14 Score=142.34 Aligned_cols=160 Identities=21% Similarity=0.163 Sum_probs=116.1
Q ss_pred HhhhcCccccEEEcCCCCcc-----ccccccCCCCccceeecccCCCc------cccchhhccCCCccEeccCCcccccc
Q 048833 330 SCISKSQFLRVLNLSESSIE-----VCSRKMGNLKHMRYLDLSRNSKI------KKLPKSICELQSLETLDLAGCLELEE 398 (629)
Q Consensus 330 ~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~------~~lp~~~~~l~~L~~L~l~~~~~~~~ 398 (629)
..+..+..|++|+++++.+. .++..+...+.|++|+++++... ..++..+..+++|+.|++++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 44566777999999999983 45666777888999999887433 23455677899999999999865545
Q ss_pred CCccccccCc---ccEEEecCcccccC-----cccCCCC-CCCCeEeecCCCCc----chhhhhCCCCCccceEecccCC
Q 048833 399 LPKDIKYLVN---LRVLVLTTKQKSLQ-----ESGIRSL-GSLRSLKIFGCRDL----EHLFEEIDQLSVLRTLSIESCP 465 (629)
Q Consensus 399 lp~~i~~l~~---L~~L~l~~~~~~~~-----~~~~~~l-~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~ 465 (629)
.+..+..+.+ |++|++++|.+... ...+..+ ++|+.|++++|... ..++..+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 5555555555 99999999876521 2344566 88999999998754 2345566777889999998876
Q ss_pred CCc----cccccccCCCccceeeccccc
Q 048833 466 RLI----SLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 466 ~~~----~lp~~~~~l~~L~~L~l~~~~ 489 (629)
... .++..+..+++|++|++++|.
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 442 334445566799999998874
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=3.7e-12 Score=121.06 Aligned_cols=133 Identities=18% Similarity=0.197 Sum_probs=89.5
Q ss_pred CCCCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCC-CCccccccc-cCC
Q 048833 280 SIPKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSE-SSIEVCSRK-MGN 357 (629)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~l~~~-~~~ 357 (629)
.+|+..-.+.+..+.++.. .++.|+.+++||.|+++.|.+..+.... |..++.|..|-+-+ |+|+.+|+. |.+
T Consensus 64 ~LP~~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~A----F~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDA----FKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred cCCCcceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHh----hhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 4566667777777776665 3567778888888888877766554443 55666655555544 777777765 777
Q ss_pred CCccceeecccCCCccccchhhccCCCccEeccCCccccccCCc-cccccCcccEEEecCcc
Q 048833 358 LKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPK-DIKYLVNLRVLVLTTKQ 418 (629)
Q Consensus 358 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 418 (629)
|..|+-|.+.-|...-.....+..+++|..|.+..| .++.++. .+..+.+++++++..|.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 777777777666433344556777777777777775 5666666 56777777777776654
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=2.6e-12 Score=122.10 Aligned_cols=127 Identities=21% Similarity=0.214 Sum_probs=66.5
Q ss_pred eEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccc-ccccCCCCccceeecccCCCccccch-hhccCCCccEe
Q 048833 311 RTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVC-SRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLETL 388 (629)
Q Consensus 311 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L 388 (629)
..+.+..|.+..++. ..|+.++.||.|||++|.|+.+ |..|.++.+|..|-+.+++.++.+|+ .|++|..|+.|
T Consensus 70 veirLdqN~I~~iP~----~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPP----GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred eEEEeccCCcccCCh----hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 344455554444332 3355666666666666666544 33455666655555555445555553 35556666666
Q ss_pred ccCCccccccCCccccccCcccEEEecCcccccCcc-cCCCCCCCCeEeecCCC
Q 048833 389 DLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQES-GIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 389 ~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 441 (629)
.+.-|.........+..+++|..|.+..|.+..... .+..+.+++++.+..|.
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 655543222333345566666666666555544433 45555555555554443
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=8.3e-11 Score=110.52 Aligned_cols=243 Identities=18% Similarity=0.167 Sum_probs=166.1
Q ss_pred hhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCC----cccccc-------ccCCCCccceeeccc
Q 048833 300 FSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESS----IEVCSR-------KMGNLKHMRYLDLSR 368 (629)
Q Consensus 300 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~l~~-------~~~~l~~L~~L~l~~ 368 (629)
+...+..+..+..+++++|.++.-...+....+.+.+.|+..+++..- ..++|+ .+..+++|++|+||.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 345667788899999999999988888888899999999999988642 123333 345677999999999
Q ss_pred CCCccccc----hhhccCCCccEeccCCccccccC--------------CccccccCcccEEEecCcccccCc-----cc
Q 048833 369 NSKIKKLP----KSICELQSLETLDLAGCLELEEL--------------PKDIKYLVNLRVLVLTTKQKSLQE-----SG 425 (629)
Q Consensus 369 ~~~~~~lp----~~~~~l~~L~~L~l~~~~~~~~l--------------p~~i~~l~~L~~L~l~~~~~~~~~-----~~ 425 (629)
|......+ ..+.++..|++|.|.+|. ++.. -..+++-++|+++...+|++...+ ..
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 86554433 346678999999999884 3221 122456788999999988875442 34
Q ss_pred CCCCCCCCeEeecCCCCc----chhhhhCCCCCccceEecccCCCCc----cccccccCCCccceeeccccccccccccc
Q 048833 426 IRSLGSLRSLKIFGCRDL----EHLFEEIDQLSVLRTLSIESCPRLI----SLPPAIKYLSSLENLYLARCESLDLNLNM 497 (629)
Q Consensus 426 ~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~l~~~~~~ 497 (629)
+...+.|+.+.++.|.+- +.+...+..+++|+.|++++|.... .+...+..+++|++|++++|..-+
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~----- 255 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN----- 255 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc-----
Confidence 667788999999888753 2445667788999999998876433 233445667788888888873211
Q ss_pred cccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCc----cCCcCCCCCCCcCeeecccC
Q 048833 498 EIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFM----ALPRSLKDLEALETLVIARC 573 (629)
Q Consensus 498 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~c 573 (629)
.+-..+-..+ ....|+|+.|.+.+|..-. .+...+...|.|..|.|++|
T Consensus 256 --------------------------~Ga~a~~~al-~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 256 --------------------------EGAIAFVDAL-KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred --------------------------ccHHHHHHHH-hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 1111222222 2346788888888875422 12233455788888888886
Q ss_pred cc
Q 048833 574 PK 575 (629)
Q Consensus 574 ~~ 575 (629)
..
T Consensus 309 ~l 310 (382)
T KOG1909|consen 309 RL 310 (382)
T ss_pred cc
Confidence 43
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=1.7e-10 Score=127.37 Aligned_cols=259 Identities=24% Similarity=0.257 Sum_probs=157.9
Q ss_pred cCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCC--ccccccc-cCCCCccceeecccCCCccccchhhcc
Q 048833 305 SDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESS--IEVCSRK-MGNLKHMRYLDLSRNSKIKKLPKSICE 381 (629)
Q Consensus 305 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~ 381 (629)
.+....|...+.++........ ..++.|++|-+..+. +..++.. |..++.|++|||++|..+..+|..+++
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~------~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGS------SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred cchhheeEEEEeccchhhccCC------CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 3446667777766554433222 244568888888875 5555543 778999999999998888899999999
Q ss_pred CCCccEeccCCccccccCCccccccCcccEEEecCcccccC-cccCCCCCCCCeEeecCCC--CcchhhhhCCCCCccce
Q 048833 382 LQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQ-ESGIRSLGSLRSLKIFGCR--DLEHLFEEIDQLSVLRT 458 (629)
Q Consensus 382 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~ 458 (629)
|-+|++|++++ +.+..+|.++++|.+|.+|++..+..... +.....|++|++|.+.... ........+..+.+|+.
T Consensus 594 Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 594 LVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLEN 672 (889)
T ss_pred hhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhh
Confidence 99999999988 47889999999999999999987654333 3344458899999886543 11223344556666666
Q ss_pred EecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhc---
Q 048833 459 LSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQ--- 535 (629)
Q Consensus 459 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--- 535 (629)
+.+..... .+-..+..++.|.++...-+. ................+|+.|.+.+|........+...
T Consensus 673 ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~--------~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~ 742 (889)
T KOG4658|consen 673 LSITISSV--LLLEDLLGMTRLRSLLQSLSI--------EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIV 742 (889)
T ss_pred heeecchh--HhHhhhhhhHHHHHHhHhhhh--------cccccceeecccccccCcceEEEEcCCCchhhcccccccch
Confidence 65533221 111112223333322211110 00111122334445568888888887665333222111
Q ss_pred CC-CCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCc
Q 048833 536 GS-TDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPE 581 (629)
Q Consensus 536 ~~-~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 581 (629)
.. ++++..+.+.+|..... +.+....|+|+.|.+..|..++.+..
T Consensus 743 ~~~f~~l~~~~~~~~~~~r~-l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 743 LLCFPNLSKVSILNCHMLRD-LTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred hhhHHHHHHHHhhccccccc-cchhhccCcccEEEEecccccccCCC
Confidence 11 44566666666654444 33345668999999999988876543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=2.1e-11 Score=121.31 Aligned_cols=169 Identities=26% Similarity=0.346 Sum_probs=116.3
Q ss_pred ceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEec
Q 048833 310 VRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLD 389 (629)
Q Consensus 310 l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 389 (629)
....+++.|.+...+.. +..+..|..+.+..|.+..+|..++++..|.+|+|+.| .+..+|..++.|+ |+.|.
T Consensus 77 t~~aDlsrNR~~elp~~-----~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEE-----ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred hhhhhccccccccCchH-----HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEE
Confidence 33445555555444333 34455677777777777777777777778888888776 5667777777665 67777
Q ss_pred cCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCcc
Q 048833 390 LAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLIS 469 (629)
Q Consensus 390 l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 469 (629)
+++| .++.+|..++.+..|.+|+.+.|.+...++.++.+.+|+.|++..|. +..+|+.+..++ |.+|+++. +++..
T Consensus 150 ~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~Lp-Li~lDfSc-Nkis~ 225 (722)
T KOG0532|consen 150 VSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLP-LIRLDFSC-NKISY 225 (722)
T ss_pred EecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCc-eeeeeccc-Cceee
Confidence 7765 67777777777777777777777777777777777777777777765 456666666444 77777743 45677
Q ss_pred ccccccCCCccceeeccccc
Q 048833 470 LPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 470 lp~~~~~l~~L~~L~l~~~~ 489 (629)
+|-.|.+|+.|++|.|.+|.
T Consensus 226 iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred cchhhhhhhhheeeeeccCC
Confidence 77777777777777777653
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=4.2e-11 Score=119.19 Aligned_cols=213 Identities=31% Similarity=0.427 Sum_probs=148.7
Q ss_pred cEEEcCCCCccccccccC--CCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecC
Q 048833 339 RVLNLSESSIEVCSRKMG--NLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTT 416 (629)
Q Consensus 339 ~~L~l~~~~~~~l~~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~ 416 (629)
-.|.|++-.++.+|..-. .+..-...+++.| ....+|..++.+..|+.+.|..| -+..+|..+.++..|.+|+++.
T Consensus 53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 53 GRLLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred cccccccchhhcCCCccccccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhcc
Confidence 355666666666665422 3444566778876 56778888888888888888775 5778888888888888888888
Q ss_pred cccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeecccccccccccc
Q 048833 417 KQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLN 496 (629)
Q Consensus 417 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~ 496 (629)
|+++..+..+..++ |+.|-+++|. +..+|+.++.+..|..|+.+.|. +..+|+.++.+.+|+.|.+..|.
T Consensus 131 NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~------- 200 (722)
T KOG0532|consen 131 NQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH------- 200 (722)
T ss_pred chhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-------
Confidence 88888777776666 7777776665 67788888888888888887654 66777778888888888888763
Q ss_pred ccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccC
Q 048833 497 MEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKL 576 (629)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l 576 (629)
+..+|..+ . .-.|..||++.| ++..+|..|..|+.|++|.|.+|+ +
T Consensus 201 -----------------------------l~~lp~El--~-~LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNP-L 246 (722)
T KOG0532|consen 201 -----------------------------LEDLPEEL--C-SLPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNP-L 246 (722)
T ss_pred -----------------------------hhhCCHHH--h-CCceeeeecccC-ceeecchhhhhhhhheeeeeccCC-C
Confidence 33344444 2 224667777644 577777777778888888777754 5
Q ss_pred ccCCcCC---CCCCCcCeEeeeCC
Q 048833 577 SSLPEGM---HHVTTLKLLTIGGC 597 (629)
Q Consensus 577 ~~lp~~~---~~l~~L~~L~l~~c 597 (629)
.+-|..+ +...-.|+|+..-|
T Consensus 247 qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 247 QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCChHHHHhccceeeeeeecchhc
Confidence 5555433 23334566666666
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.3e-10 Score=108.15 Aligned_cols=208 Identities=23% Similarity=0.178 Sum_probs=129.2
Q ss_pred hhcCccccEEEcCCCCcccccc--ccCCCCccceeecccCCCcc---ccchhhccCCCccEeccCCccccccCCcc--cc
Q 048833 332 ISKSQFLRVLNLSESSIEVCSR--KMGNLKHMRYLDLSRNSKIK---KLPKSICELQSLETLDLAGCLELEELPKD--IK 404 (629)
Q Consensus 332 ~~~~~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~~lp~~--i~ 404 (629)
-++++.|+...|.++.+...+. -...+++++.|||++| .+. .+-.....|++|+.|+|+.|. +.....+ -.
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~ 194 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTL 194 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCccccchh
Confidence 3467788888998888876653 4667889999999887 332 333445678889999998873 3222211 13
Q ss_pred ccCcccEEEecCcccccC--cccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCcccc--ccccCCCcc
Q 048833 405 YLVNLRVLVLTTKQKSLQ--ESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLP--PAIKYLSSL 480 (629)
Q Consensus 405 ~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L 480 (629)
.++.|+.|.++.|.++.. ......+|+|+.|.+..|............+..|+.|+|++|+... ++ ...+.++.|
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccch
Confidence 667788888888877643 2234567888888888875333222334456678888887766433 22 346677888
Q ss_pred ceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCc--C
Q 048833 481 ENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPR--S 558 (629)
Q Consensus 481 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~ 558 (629)
+.|+++.|..-++.. -++..+. ....+++|++|++..|+ +.+++. .
T Consensus 274 ~~Lnls~tgi~si~~-------------------------~d~~s~~------kt~~f~kL~~L~i~~N~-I~~w~sl~~ 321 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAE-------------------------PDVESLD------KTHTFPKLEYLNISENN-IRDWRSLNH 321 (505)
T ss_pred hhhhccccCcchhcC-------------------------CCccchh------hhcccccceeeecccCc-cccccccch
Confidence 888887764322211 0000000 01467889999988875 444432 2
Q ss_pred CCCCCCcCeeecccCc
Q 048833 559 LKDLEALETLVIARCP 574 (629)
Q Consensus 559 ~~~l~~L~~L~l~~c~ 574 (629)
+..+++|+.|.+..+.
T Consensus 322 l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 322 LRTLENLKHLRITLNY 337 (505)
T ss_pred hhccchhhhhhccccc
Confidence 4456677777766643
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.85 E-value=1.5e-10 Score=111.21 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=46.5
Q ss_pred CCCCCccEEEecCCCCCccC-----CcCCCCCCCcCeeecccCccCcc-CCcCCCCCCCcCeEeeeCCCccccccCCCCC
Q 048833 536 GSTDTLRDLFIVSCPNFMAL-----PRSLKDLEALETLVIARCPKLSS-LPEGMHHVTTLKLLTIGGCPALSERCKPPTG 609 (629)
Q Consensus 536 ~~~~~L~~L~l~~~~~~~~l-----~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 609 (629)
..++.|+.|.++.|..+++. ...-..+..|+.+.+++|+.++. .-..+..+++|+.+++.+|...++.....
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~-- 446 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR-- 446 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH--
Confidence 35566666666666554433 23334556677777777776654 22334556677777777777666543221
Q ss_pred CCCCcccCCCceeeC
Q 048833 610 EDWPKISHIPQVYLD 624 (629)
Q Consensus 610 ~~~~~i~~l~~v~~~ 624 (629)
...|+|++.+.
T Consensus 447 ----~~~~lp~i~v~ 457 (483)
T KOG4341|consen 447 ----FATHLPNIKVH 457 (483)
T ss_pred ----HHhhCccceeh
Confidence 23566665543
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=1.2e-08 Score=105.73 Aligned_cols=151 Identities=32% Similarity=0.426 Sum_probs=100.9
Q ss_pred CccccEEEcCCCCccccccccCCCC-ccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEE
Q 048833 335 SQFLRVLNLSESSIEVCSRKMGNLK-HMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLV 413 (629)
Q Consensus 335 ~~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 413 (629)
.+.+..|++.++.+..++.....+. +|+.|++++| .+..+|..+..+++|+.|+++.| .+.++|...+.+++|+.|+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence 3567777777777777776666664 7777777765 56666666777777777777775 5667776666777777777
Q ss_pred ecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccc
Q 048833 414 LTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 414 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 489 (629)
+++|.+...+..+..+..|++|.+++|. ....+..+..+.++..|.+.++ .+..++..++.+++++.|++++|.
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCc-eeeeccchhccccccceecccccc
Confidence 7777777666555555667777777764 2334455666666777665443 344445666677777777777664
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=4.7e-09 Score=92.72 Aligned_cols=101 Identities=35% Similarity=0.457 Sum_probs=25.8
Q ss_pred ccccEEEcCCCCccccccccC-CCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccc-cccCcccEEE
Q 048833 336 QFLRVLNLSESSIEVCSRKMG-NLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDI-KYLVNLRVLV 413 (629)
Q Consensus 336 ~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i-~~l~~L~~L~ 413 (629)
..++.|+|+++.|..+. .++ .+.+|+.|++++| .+..++. +..++.|++|++++| .+..++..+ ..+++|++|+
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEE
Confidence 34666677776666553 343 4566677777665 4555543 556666777777665 455554434 3466666666
Q ss_pred ecCcccccCc--ccCCCCCCCCeEeecCC
Q 048833 414 LTTKQKSLQE--SGIRSLGSLRSLKIFGC 440 (629)
Q Consensus 414 l~~~~~~~~~--~~~~~l~~L~~L~l~~~ 440 (629)
+++|.+.... ..+..+++|+.|++.+|
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 6666553321 12333444444444444
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.74 E-value=8.7e-09 Score=106.70 Aligned_cols=193 Identities=26% Similarity=0.374 Sum_probs=128.8
Q ss_pred EEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCC-CccEeccCCccccccCCccccccCcccEEEecCcc
Q 048833 340 VLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ-SLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQ 418 (629)
Q Consensus 340 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~ 418 (629)
.+.+..+.+......+..+..+..|++.++ .+..+|.....+. +|+.|++++| .+..+|..++.+++|+.|+++.|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCc-ccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 466666665444445556678888888866 6778888777774 8888888886 677777778888888888888888
Q ss_pred cccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeecccccccccccccc
Q 048833 419 KSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNME 498 (629)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~ 498 (629)
+...+...+..++|+.|++++|. +..+|..+..+..|++|.+.+|. ....+..+.+++++..|.+.++....
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~------ 246 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED------ 246 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee------
Confidence 87776666677888888888876 55666666666678888887654 34445556677777777765543221
Q ss_pred ccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccC
Q 048833 499 IEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKL 576 (629)
Q Consensus 499 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l 576 (629)
++..+ ..+++++.|++++|. ++.++. ++.+.+|+.|+++++...
T Consensus 247 ------------------------------~~~~~--~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 247 ------------------------------LPESI--GNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ------------------------------ccchh--ccccccceecccccc-cccccc-ccccCccCEEeccCcccc
Confidence 11222 344556666666653 444444 566666667766665433
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.4e-09 Score=100.37 Aligned_cols=202 Identities=18% Similarity=0.100 Sum_probs=134.9
Q ss_pred cceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccc--cCCCCcc
Q 048833 284 SVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRK--MGNLKHM 361 (629)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~l~~L 361 (629)
+++.+++................|++++.|+++.|-+.. ...+......+++|+.|+++.|.+.....+ -..+.+|
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 456666666555443322466788999999999865442 233445677899999999999988754443 2357899
Q ss_pred ceeecccCCCcc-ccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCc--ccCCCCCCCCeEeec
Q 048833 362 RYLDLSRNSKIK-KLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQE--SGIRSLGSLRSLKIF 438 (629)
Q Consensus 362 ~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~ 438 (629)
+.|.|+.|.... .+-.....+|+|+.|+|.+|..+..-......+..|+.|+|++|.+...+ ...+.++.|..|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 999999985432 23333456889999999988533333333456778899999998876554 567888899999888
Q ss_pred CCCCcc-hhhhh-----CCCCCccceEecccCCC--CccccccccCCCccceeecccc
Q 048833 439 GCRDLE-HLFEE-----IDQLSVLRTLSIESCPR--LISLPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 439 ~~~~~~-~~~~~-----~~~l~~L~~L~l~~~~~--~~~lp~~~~~l~~L~~L~l~~~ 488 (629)
.|...+ ..|+. ...+++|+.|++..|+. ...+. .+..+++|+.|.+..+
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~-~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN-HLRTLENLKHLRITLN 336 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccc-hhhccchhhhhhcccc
Confidence 876422 22222 34678899999988764 22332 2445667777776554
No 35
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.70 E-value=7.3e-10 Score=106.60 Aligned_cols=169 Identities=16% Similarity=0.248 Sum_probs=113.7
Q ss_pred CCCCCCCeEeecCCCCcc--hhhhhCCCCCccceEecccCCCCcccc--ccccCCCccceeeccccccccccccccccCC
Q 048833 427 RSLGSLRSLKIFGCRDLE--HLFEEIDQLSVLRTLSIESCPRLISLP--PAIKYLSSLENLYLARCESLDLNLNMEIEGE 502 (629)
Q Consensus 427 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 502 (629)
..+..++.+.+.||...+ .+...-+.+..+.++++..|..+++.. ..-..+..|+.|+.++|...+...
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~------- 311 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV------- 311 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH-------
Confidence 344456666556665432 222233345567777777776666433 223456788888888886543221
Q ss_pred CCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccC--CcCCCCCCCcCeeecccCccCccC-
Q 048833 503 GSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMAL--PRSLKDLEALETLVIARCPKLSSL- 579 (629)
Q Consensus 503 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~c~~l~~l- 579 (629)
.......+.+|+.+.+.+|..+.+........+.+.|+.+++.+|.....- -.--.+++.|+.|.+++|..+++.
T Consensus 312 --l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g 389 (483)
T KOG4341|consen 312 --LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG 389 (483)
T ss_pred --HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh
Confidence 122334567899999999988877765555678899999999998765543 333468999999999999877764
Q ss_pred ----CcCCCCCCCcCeEeeeCCCcccccc
Q 048833 580 ----PEGMHHVTTLKLLTIGGCPALSERC 604 (629)
Q Consensus 580 ----p~~~~~l~~L~~L~l~~c~~l~~~~ 604 (629)
...-.....|..+.+++||.+.+..
T Consensus 390 i~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 390 IRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred hhhhhhccccccccceeeecCCCCchHHH
Confidence 3333456789999999999888754
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=9.1e-09 Score=90.93 Aligned_cols=138 Identities=27% Similarity=0.323 Sum_probs=50.9
Q ss_pred CCccccccccCCCCccceeecccCCCccccchhhc-cCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcc
Q 048833 346 SSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSIC-ELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQES 424 (629)
Q Consensus 346 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~ 424 (629)
+.++..+. +.+..+++.|+|++| .+..+.. ++ .+.+|+.|++++| .+..++ ++..++.|+.|++++|.+.....
T Consensus 7 ~~i~~~~~-~~n~~~~~~L~L~~n-~I~~Ie~-L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 7 NMIEQIAQ-YNNPVKLRELNLRGN-QISTIEN-LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp -------------------------------S---TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CH
T ss_pred cccccccc-ccccccccccccccc-ccccccc-hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 34444443 446668899999987 5666644 55 5889999999997 677775 68889999999999999987754
Q ss_pred cC-CCCCCCCeEeecCCCCcc-hhhhhCCCCCccceEecccCCCCccc---cccccCCCccceeecccc
Q 048833 425 GI-RSLGSLRSLKIFGCRDLE-HLFEEIDQLSVLRTLSIESCPRLISL---PPAIKYLSSLENLYLARC 488 (629)
Q Consensus 425 ~~-~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~l---p~~~~~l~~L~~L~l~~~ 488 (629)
.+ ..+++|++|++++|.... .-...+..+++|+.|++.+|+....- ...+..+|+|+.||-...
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 44 368999999999887422 11244667899999999988744321 134667888888886543
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.62 E-value=9.4e-09 Score=94.64 Aligned_cols=128 Identities=21% Similarity=0.170 Sum_probs=67.2
Q ss_pred ccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceee
Q 048833 405 YLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLY 484 (629)
Q Consensus 405 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 484 (629)
..+.|..+++++|.+........-++.++.|+++.|...+ ...+..+++|+.|++++|. +..+-.|-..+.|+++|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccch-hHhhhhhHhhhcCEeeee
Confidence 3445555555555555554455555555555555554322 1234455555555555532 333333334455555555
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccC--CcCCCCC
Q 048833 485 LARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMAL--PRSLKDL 562 (629)
Q Consensus 485 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l--~~~~~~l 562 (629)
+++|.. ..+. .+ +.+-+|..|++++|. ++.+ -.+++++
T Consensus 359 La~N~i------------------------------------E~LS-GL--~KLYSLvnLDl~~N~-Ie~ldeV~~IG~L 398 (490)
T KOG1259|consen 359 LAQNKI------------------------------------ETLS-GL--RKLYSLVNLDLSSNQ-IEELDEVNHIGNL 398 (490)
T ss_pred hhhhhH------------------------------------hhhh-hh--Hhhhhheeccccccc-hhhHHHhcccccc
Confidence 555421 1111 11 344567777777764 3332 2357788
Q ss_pred CCcCeeecccCcc
Q 048833 563 EALETLVIARCPK 575 (629)
Q Consensus 563 ~~L~~L~l~~c~~ 575 (629)
|+|+.+.|.+|+.
T Consensus 399 PCLE~l~L~~NPl 411 (490)
T KOG1259|consen 399 PCLETLRLTGNPL 411 (490)
T ss_pred cHHHHHhhcCCCc
Confidence 8888888888653
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.3e-09 Score=100.15 Aligned_cols=178 Identities=19% Similarity=0.204 Sum_probs=94.4
Q ss_pred CccEeccCCccccc--cCCccccccCcccEEEecCcccccC-cccCCCCCCCCeEeecCCCCcchhh--hhCCCCCccce
Q 048833 384 SLETLDLAGCLELE--ELPKDIKYLVNLRVLVLTTKQKSLQ-ESGIRSLGSLRSLKIFGCRDLEHLF--EEIDQLSVLRT 458 (629)
Q Consensus 384 ~L~~L~l~~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~ 458 (629)
.||+|||++. .++ .+-.-++.+.+|+.|.+.++.+..+ ...+++-.+|+.|+++.|+.++... -.+..|+.|..
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4788888763 222 2333346677777777777766543 2345666677777777776654332 23456677777
Q ss_pred EecccCCCCcccccc-cc-CCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcC
Q 048833 459 LSIESCPRLISLPPA-IK-YLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQG 536 (629)
Q Consensus 459 L~l~~~~~~~~lp~~-~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 536 (629)
|+++.|...+..-.. +. --++|..|+++|+...-. ...+. ....
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~--------------------------------~sh~~--tL~~ 310 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ--------------------------------KSHLS--TLVR 310 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh--------------------------------hhHHH--HHHH
Confidence 777766543322111 11 124566666666532110 00111 1124
Q ss_pred CCCCccEEEecCCCCCcc-CCcCCCCCCCcCeeecccCccCccCCc---CCCCCCCcCeEeeeCCC
Q 048833 537 STDTLRDLFIVSCPNFMA-LPRSLKDLEALETLVIARCPKLSSLPE---GMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 537 ~~~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~c~~l~~lp~---~~~~l~~L~~L~l~~c~ 598 (629)
.+|+|..|||++|-.++. .-..+..++.|++|.++.|-.+ .|. .+...|+|.+|++.||-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 556666666666654442 2223455666666666666433 221 23455666677666653
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=3e-08 Score=91.43 Aligned_cols=125 Identities=30% Similarity=0.333 Sum_probs=63.1
Q ss_pred cccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecC
Q 048833 337 FLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTT 416 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~ 416 (629)
.|..+||++|.|..+-.+..-.+.++.|++++| .+..+.. +..+++|+.|||++| .+..+-..-.++-|.+.|.++.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhh
Confidence 355666666666655555555566666666655 2333333 555566666666654 3333332223455555555555
Q ss_pred cccccCcccCCCCCCCCeEeecCCCCcc-hhhhhCCCCCccceEecccCC
Q 048833 417 KQKSLQESGIRSLGSLRSLKIFGCRDLE-HLFEEIDQLSVLRTLSIESCP 465 (629)
Q Consensus 417 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 465 (629)
|.+... ++++++=+|..|++.+|+.-. .-...+++++.|+.|.+.+|+
T Consensus 362 N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 362 NKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 544433 344455555555555554211 112345555555555555543
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.1e-08 Score=92.36 Aligned_cols=178 Identities=21% Similarity=0.248 Sum_probs=103.2
Q ss_pred CCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcc-ccccccCCCCccceeecccCCCcccc--chhhccCCC
Q 048833 308 GRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIE-VCSRKMGNLKHMRYLDLSRNSKIKKL--PKSICELQS 384 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l--p~~~~~l~~ 384 (629)
++++.++++... +....+...++.|..|+.|.++++.+. .+-..+.+-.+|+.|++++|+.++.. .-.+.+|+.
T Consensus 185 sRlq~lDLS~s~---it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSV---ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhh---eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 356667776533 334455566777777888888777765 22334566677888888887766543 233567888
Q ss_pred ccEeccCCccccccCCccc--cccCcccEEEecCcccccCcc----cCCCCCCCCeEeecCCCCcc-hhhhhCCCCCccc
Q 048833 385 LETLDLAGCLELEELPKDI--KYLVNLRVLVLTTKQKSLQES----GIRSLGSLRSLKIFGCRDLE-HLFEEIDQLSVLR 457 (629)
Q Consensus 385 L~~L~l~~~~~~~~lp~~i--~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~ 457 (629)
|+.|+|++|....+....+ .--++|..|+++++....... -...+++|..|++++|..+. .....+-+++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 8888888875443322111 122456666776654332211 22456677777777665433 3334555667777
Q ss_pred eEecccCCCCcc-ccccccCCCccceeecccc
Q 048833 458 TLSIESCPRLIS-LPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 458 ~L~l~~~~~~~~-lp~~~~~l~~L~~L~l~~~ 488 (629)
+|.++.|..+.. .--.+...|+|.+|++.+|
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 777777653321 0112445566677776665
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.42 E-value=1e-07 Score=90.16 Aligned_cols=191 Identities=18% Similarity=0.186 Sum_probs=134.7
Q ss_pred hhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccc--------------cccccCCCCccceee
Q 048833 300 FSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEV--------------CSRKMGNLKHMRYLD 365 (629)
Q Consensus 300 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--------------l~~~~~~l~~L~~L~ 365 (629)
+...+..+++|+++++|.|.++......+...+.++..|+.|.|.+|.+.. ......+-+.|+++.
T Consensus 84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 346677888999999999999988888888889999999999999998741 122345567899998
Q ss_pred cccCCCcc----ccchhhccCCCccEeccCCcccccc----CCccccccCcccEEEecCcccccC-----cccCCCCCCC
Q 048833 366 LSRNSKIK----KLPKSICELQSLETLDLAGCLELEE----LPKDIKYLVNLRVLVLTTKQKSLQ-----ESGIRSLGSL 432 (629)
Q Consensus 366 l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~----lp~~i~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~L 432 (629)
...|..-. .+...+...+.|+.+.+..|+.... +...+..+++|+.|++..|.++.. ...+..+++|
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 88774321 2344566778899998887743221 233457889999999998877643 3456778888
Q ss_pred CeEeecCCCCcc----hhhhhC-CCCCccceEecccCCCCcc----ccccccCCCccceeecccccc
Q 048833 433 RSLKIFGCRDLE----HLFEEI-DQLSVLRTLSIESCPRLIS----LPPAIKYLSSLENLYLARCES 490 (629)
Q Consensus 433 ~~L~l~~~~~~~----~~~~~~-~~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~ 490 (629)
+.|++++|..-. .+...+ ...++|+.|.+.+|..... +-..+...+.|+.|+|++|..
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 999988886432 222222 2367888888888764332 222344578888888888853
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=1.1e-06 Score=95.63 Aligned_cols=105 Identities=19% Similarity=0.151 Sum_probs=58.8
Q ss_pred ccEeccCCccccccCCccccccCcccEEEecCcccc-cCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEeccc
Q 048833 385 LETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKS-LQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIES 463 (629)
Q Consensus 385 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 463 (629)
++.|+|++|.....+|..++.+++|+.|++++|.+. ..+..++.+++|+.|++++|.....+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455555555444455555555666666666655554 2333455566666666666655555566666666666666666
Q ss_pred CCCCccccccccCC-Cccceeeccccc
Q 048833 464 CPRLISLPPAIKYL-SSLENLYLARCE 489 (629)
Q Consensus 464 ~~~~~~lp~~~~~l-~~L~~L~l~~~~ 489 (629)
|.....+|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 65555566555432 344555555553
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1.3e-06 Score=94.93 Aligned_cols=112 Identities=19% Similarity=0.240 Sum_probs=86.8
Q ss_pred ccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCccccc-CcccCCCCCCCCeEeec
Q 048833 360 HMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSL-QESGIRSLGSLRSLKIF 438 (629)
Q Consensus 360 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~ 438 (629)
.++.|+|++|.....+|..++++++|+.|+|++|...+.+|..++.+++|+.|++++|.+.. .+..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 46778888876556788888888889999998886666888888888899999998888774 46678888889999998
Q ss_pred CCCCcchhhhhCCCC-CccceEecccCCCCcccc
Q 048833 439 GCRDLEHLFEEIDQL-SVLRTLSIESCPRLISLP 471 (629)
Q Consensus 439 ~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~lp 471 (629)
+|.....+|..++.. .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 888777778777653 466778887776554443
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=2e-06 Score=62.13 Aligned_cols=56 Identities=30% Similarity=0.490 Sum_probs=37.3
Q ss_pred cccEEEcCCCCcccccc-ccCCCCccceeecccCCCccccc-hhhccCCCccEeccCCc
Q 048833 337 FLRVLNLSESSIEVCSR-KMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLETLDLAGC 393 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~ 393 (629)
+|++|++++|.+..+|. .+.++++|++|++++|. +..+| ..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 46777777777777664 46677777777777663 44443 45667777777777765
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=8.8e-07 Score=81.92 Aligned_cols=114 Identities=14% Similarity=0.174 Sum_probs=73.5
Q ss_pred CCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCc-cCCcCCCCCCCcCeeecccCccCccCC--cCCCCCCC
Q 048833 512 RPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFM-ALPRSLKDLEALETLVIARCPKLSSLP--EGMHHVTT 588 (629)
Q Consensus 512 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~ 588 (629)
.+.++.+.+.+|.........-...-||++..+.+..|+.-+ .-..+...+|.+--|.|+. +++.++. +.+..+++
T Consensus 172 s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~ 250 (418)
T KOG2982|consen 172 STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQ 250 (418)
T ss_pred chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCch
Confidence 345556666555433222222222467899999888886422 2234456677777888887 4666654 45678999
Q ss_pred cCeEeeeCCCccccccCCCCCCCCCcccCCCcee-eCCccc
Q 048833 589 LKLLTIGGCPALSERCKPPTGEDWPKISHIPQVY-LDGEMI 628 (629)
Q Consensus 589 L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~v~-~~~~~~ 628 (629)
|..|.++++|-+...-. ....+.-|.++|+|. +||..|
T Consensus 251 l~dlRv~~~Pl~d~l~~--~err~llIaRL~~v~vLNGskI 289 (418)
T KOG2982|consen 251 LVDLRVSENPLSDPLRG--GERRFLLIARLTKVQVLNGSKI 289 (418)
T ss_pred hheeeccCCcccccccC--CcceEEEEeeccceEEecCccc
Confidence 99999999996664322 345677889999995 456554
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=1.9e-05 Score=78.71 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred hccCCCccEeccCCccccccCCccccccCcccEEEecCc
Q 048833 379 ICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTK 417 (629)
Q Consensus 379 ~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 417 (629)
+..+.++..|++++| .+..+|. -..+|+.|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc 82 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENC 82 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCC
Confidence 334567777777776 5666661 2234566665543
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=7.7e-06 Score=59.03 Aligned_cols=58 Identities=24% Similarity=0.448 Sum_probs=46.3
Q ss_pred CCccEEEecCCCCCccCC-cCCCCCCCcCeeecccCccCccCC-cCCCCCCCcCeEeeeCCC
Q 048833 539 DTLRDLFIVSCPNFMALP-RSLKDLEALETLVIARCPKLSSLP-EGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 539 ~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~ 598 (629)
|+|+.|++++| .+..+| ..+..+++|++|++++|. ++.++ ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 57888999988 566666 467889999999999864 55554 577899999999999886
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.01 E-value=1.4e-06 Score=90.36 Aligned_cols=95 Identities=32% Similarity=0.368 Sum_probs=39.7
Q ss_pred cCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccC
Q 048833 343 LSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQ 422 (629)
Q Consensus 343 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~ 422 (629)
+..+.+...-..+..+.+|..|++.+| .+..+...+..+++|++|++++| .+..+. .+..++.|+.|++.+|.+...
T Consensus 79 l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N~i~~~ 155 (414)
T KOG0531|consen 79 LRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGNLISDI 155 (414)
T ss_pred cchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheecccc-cccccc-chhhccchhhheeccCcchhc
Confidence 344433332223444444444444443 33333333344444444444443 333332 233444444444444444333
Q ss_pred cccCCCCCCCCeEeecCCC
Q 048833 423 ESGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 423 ~~~~~~l~~L~~L~l~~~~ 441 (629)
..+..+++|+.+++++|.
T Consensus 156 -~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 156 -SGLESLKSLKLLDLSYNR 173 (414)
T ss_pred -cCCccchhhhcccCCcch
Confidence 223334444444444444
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=1.7e-05 Score=79.15 Aligned_cols=63 Identities=22% Similarity=0.404 Sum_probs=36.2
Q ss_pred cCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCc
Q 048833 334 KSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPK 401 (629)
Q Consensus 334 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~ 401 (629)
.+..++.|++++|.+..+|. + ..+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 34556666666666666652 1 1346666666666666666544 24566666666655555554
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.95 E-value=4.2e-06 Score=76.53 Aligned_cols=186 Identities=18% Similarity=0.160 Sum_probs=121.2
Q ss_pred hhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcc----cc-------ccccCCCCccceeecccCC
Q 048833 302 SLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIE----VC-------SRKMGNLKHMRYLDLSRNS 370 (629)
Q Consensus 302 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~l-------~~~~~~l~~L~~L~l~~~~ 370 (629)
..+.-+..+..+++++|.++.....++..++.+-++|++.+++.-... ++ .+.+.++++|+..+||.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 344457788899999999888888888888888899999988754221 22 3345678899999999886
Q ss_pred Cccccch----hhccCCCccEeccCCccccccCCc--------------cccccCcccEEEecCcccccCc-----ccCC
Q 048833 371 KIKKLPK----SICELQSLETLDLAGCLELEELPK--------------DIKYLVNLRVLVLTTKQKSLQE-----SGIR 427 (629)
Q Consensus 371 ~~~~lp~----~~~~l~~L~~L~l~~~~~~~~lp~--------------~i~~l~~L~~L~l~~~~~~~~~-----~~~~ 427 (629)
.....|. .+++-+.|.+|.+++| .++.+.. ...+-|.|+...+..|++...+ ..+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 6554443 4566788999999887 3433221 1235577888888887765432 1233
Q ss_pred CCCCCCeEeecCCCCcch-----hhhhCCCCCccceEecccCCCCcc----ccccccCCCccceeecccc
Q 048833 428 SLGSLRSLKIFGCRDLEH-----LFEEIDQLSVLRTLSIESCPRLIS----LPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 428 ~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~ 488 (629)
.-.+|+++.+..|..-.. ....+..+++|+.|+++.|..... +...+...+.|++|.+.+|
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 446778888877764321 122344567788888877653221 2223344456777777776
No 51
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.93 E-value=0.00021 Score=82.88 Aligned_cols=204 Identities=14% Similarity=0.168 Sum_probs=123.3
Q ss_pred CceEEEEEecCCCCChhhHH-HHHHhhCCCCCCcEEEEEcCChH-H-HHhhcccCCCCceeCC----CCChhhHHHHHHH
Q 048833 29 GKRYLLVMDDVWNEDPEAWC-KLKSLLLGGANGSKILVTTRSRK-V-ASIMGTRGGTTGFNLQ----GLPFEDCLSLFMK 101 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~-~~~~~~~~~~~gs~iivTTR~~~-v-~~~~~~~~~~~~~~l~----~L~~~~a~~Lf~~ 101 (629)
+.+++|||||+...+..... .+...+.....+-++|||||... . .......+ ...++. +++.+|+.++|..
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~--~~~~l~~~~l~f~~~e~~~ll~~ 197 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRD--QLLEIGSQQLAFDHQEAQQFFDQ 197 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcC--cceecCHHhCCCCHHHHHHHHHh
Confidence 68999999999765433433 33333333456678889999842 1 11111111 345555 8999999999976
Q ss_pred hhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCCCCHHHHHHHhhhhcccccc-ccCCcchhhh-cccccCCh
Q 048833 102 CAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDSTDEHFWEYVRDNEIWQLEQ-KESGILPALR-LSYDQLPP 179 (629)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~-~sy~~L~~ 179 (629)
.... ...+ ....++.+.|+|.|+++..++..+........ .... .+.. +...+.+.+. -.++.||+
T Consensus 198 ~~~~---~~~~---~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~l~~~v~~~l~~ 265 (903)
T PRK04841 198 RLSS---PIEA---AESSRLCDDVEGWATALQLIALSARQNNSSLH-DSAR-----RLAGINASHLSDYLVEEVLDNVDL 265 (903)
T ss_pred ccCC---CCCH---HHHHHHHHHhCChHHHHHHHHHHHhhCCCchh-hhhH-----hhcCCCchhHHHHHHHHHHhcCCH
Confidence 5421 1122 34568999999999999999887764332100 0000 0111 1223444433 34789999
Q ss_pred hhhhhhhhhccCCCCceeChHhHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCCceeecccCCCCceEEEEEeChhH
Q 048833 180 RLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMFGLEVLTFKMHDLM 259 (629)
Q Consensus 180 ~~k~~fl~~~~fp~~~~~~~~~l~~~wi~eg~i~~~~~~~~~~~~~~~~l~~L~~r~ll~~~~~~~~~~~~~~~~mhd~~ 259 (629)
..+..++..|+++ .++. .+..... | .+.+...+..+.+.+++...... ....++.|+++
T Consensus 266 ~~~~~l~~~a~~~---~~~~-~l~~~l~--~-----------~~~~~~~L~~l~~~~l~~~~~~~----~~~~yr~H~L~ 324 (903)
T PRK04841 266 ETRHFLLRCSVLR---SMND-ALIVRVT--G-----------EENGQMRLEELERQGLFIQRMDD----SGEWFRYHPLF 324 (903)
T ss_pred HHHHHHHHhcccc---cCCH-HHHHHHc--C-----------CCcHHHHHHHHHHCCCeeEeecC----CCCEEehhHHH
Confidence 9999999999986 2332 2222111 1 11246778899999986532221 12257789999
Q ss_pred HHHHHHHh
Q 048833 260 HDLAMLVA 267 (629)
Q Consensus 260 ~~~~~~~~ 267 (629)
+++.....
T Consensus 325 r~~l~~~l 332 (903)
T PRK04841 325 ASFLRHRC 332 (903)
T ss_pred HHHHHHHH
Confidence 99987654
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=2.5e-06 Score=88.48 Aligned_cols=106 Identities=30% Similarity=0.404 Sum_probs=60.7
Q ss_pred hhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccE
Q 048833 332 ISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRV 411 (629)
Q Consensus 332 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 411 (629)
+..++.|..|++.++.++.+...+..+++|++|++++| .+..+.. +..++.|+.|++++| .+..+. .+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 34455666666666666655443556666666666665 4555543 455566666666665 344443 3445666666
Q ss_pred EEecCcccccCccc-CCCCCCCCeEeecCCC
Q 048833 412 LVLTTKQKSLQESG-IRSLGSLRSLKIFGCR 441 (629)
Q Consensus 412 L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 441 (629)
+++++|.+...... ...+.+++.+.+.+|.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 66666665544332 3555666666666654
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=4.7e-05 Score=82.66 Aligned_cols=149 Identities=18% Similarity=0.231 Sum_probs=88.4
Q ss_pred EEEeChhHHHHHHHHhccceEEEecCCCCCCCcceEEEEEcccCCcchhhh-hccCCCCceEEEEecCCCCccchHHHHH
Q 048833 252 TFKMHDLMHDLAMLVAKDEFLVVNSDCQSIPKSVRHLSFAAANASRNDFSS-LLSDLGRVRTICFSTDDDEKTSQSFVES 330 (629)
Q Consensus 252 ~~~mhd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~~~~~~~ 330 (629)
.+.|-++++++....++ .+++++.+.+........+. .-.-+|.|++|.+.+-.+. .+.+..
T Consensus 105 ~idi~~lL~~~Ln~~sr--------------~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~---~~dF~~ 167 (699)
T KOG3665|consen 105 TIDIISLLKDLLNEESR--------------QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD---NDDFSQ 167 (699)
T ss_pred hccHHHHHHHHHhHHHH--------------HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec---chhHHH
Confidence 34455566666544444 34677777665433332322 2345688888888764433 222444
Q ss_pred hhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccc--hhhccCCCccEeccCCccccccCCcc------
Q 048833 331 CISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLP--KSICELQSLETLDLAGCLELEELPKD------ 402 (629)
Q Consensus 331 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~~------ 402 (629)
.+.++++|+.||++++++..+ .+++++++|+.|.+.+= .+..-. ..+.+|++|+.||+|..... ..+..
T Consensus 168 lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYle 244 (699)
T KOG3665|consen 168 LCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLE 244 (699)
T ss_pred HhhccCccceeecCCCCccCc-HHHhccccHHHHhccCC-CCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHH
Confidence 567788888888888888776 56788888888877642 333211 23567888888888864222 22211
Q ss_pred -ccccCcccEEEecCcccc
Q 048833 403 -IKYLVNLRVLVLTTKQKS 420 (629)
Q Consensus 403 -i~~l~~L~~L~l~~~~~~ 420 (629)
-..||+|+.|+++++...
T Consensus 245 c~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 245 CGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hcccCccccEEecCCcchh
Confidence 134677777777765543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=8.8e-05 Score=48.91 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=18.1
Q ss_pred cccEEEcCCCCccccccccCCCCccceeecccC
Q 048833 337 FLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRN 369 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~ 369 (629)
+|++|++++|.++.+|..+.+|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 355566666666555555555666666666555
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.49 E-value=1.5e-05 Score=85.11 Aligned_cols=61 Identities=23% Similarity=0.444 Sum_probs=36.3
Q ss_pred EEecCCCCC-ccCCcCCCCCCCcCeeecccCccCccCCcC-CCC-CCCcCeEeeeCCCcccccc
Q 048833 544 LFIVSCPNF-MALPRSLKDLEALETLVIARCPKLSSLPEG-MHH-VTTLKLLTIGGCPALSERC 604 (629)
Q Consensus 544 L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~-l~~L~~L~l~~c~~l~~~~ 604 (629)
+.+.+|+.+ ..+........+|+.|.+..|...+.---. ... +..+..+++.+|+.+....
T Consensus 381 ~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 381 LSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred HHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 445556555 222222333444889999998766542211 111 6678889999998777653
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=0.00011 Score=79.95 Aligned_cols=134 Identities=24% Similarity=0.250 Sum_probs=97.4
Q ss_pred CCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcc--ccccccCCCCccceeecccCCCccccchhhccCCCc
Q 048833 308 GRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIE--VCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSL 385 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 385 (629)
.+|+.|++++. ......++...-..+|.|+.|.+.+-.+. .+.....++++|..||++++ .+..+ .+++.|++|
T Consensus 122 ~nL~~LdI~G~--~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGS--ELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCcccc--chhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccH
Confidence 57888888873 44466677777778899999999987764 33445678899999999986 67777 668999999
Q ss_pred cEeccCCcccccc--CCccccccCcccEEEecCcccccCc-------ccCCCCCCCCeEeecCCCCcchh
Q 048833 386 ETLDLAGCLELEE--LPKDIKYLVNLRVLVLTTKQKSLQE-------SGIRSLGSLRSLKIFGCRDLEHL 446 (629)
Q Consensus 386 ~~L~l~~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~ 446 (629)
+.|.+.+- .... .-..+-+|++|++||++.......+ ..-..+|+|+.|+.++...-..+
T Consensus 198 q~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 198 QVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHHhccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 99998763 3322 1235678999999999976543322 22345889999999887654433
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=0.00012 Score=48.32 Aligned_cols=39 Identities=38% Similarity=0.664 Sum_probs=23.7
Q ss_pred CccceeecccCCCccccchhhccCCCccEeccCCccccccC
Q 048833 359 KHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEEL 399 (629)
Q Consensus 359 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~l 399 (629)
++|++|++++| .+..+|..+++|++|++|++++| .+.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 35677777766 46666666677777777777766 34443
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.45 E-value=9.6e-06 Score=84.12 Aligned_cols=79 Identities=28% Similarity=0.366 Sum_probs=32.8
Q ss_pred ccccEEEcCCCCccccccccCCCCccceeecccCCCccccchh-hccCCCccEeccCCccccccCCccccccCcccEEEe
Q 048833 336 QFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKS-ICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVL 414 (629)
Q Consensus 336 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 414 (629)
+.|+.|+|++|++..+- .+..+++|+.|||++| .+..+|.. ...+ +|+.|.+++| .+..+ .++.+|.+|+.|++
T Consensus 187 ~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeeccc-HHHhh-hhHHhhhhhhccch
Confidence 34444444444444432 3444444444444444 23333321 1112 2444444443 23333 13444444444444
Q ss_pred cCccc
Q 048833 415 TTKQK 419 (629)
Q Consensus 415 ~~~~~ 419 (629)
++|.+
T Consensus 262 syNll 266 (1096)
T KOG1859|consen 262 SYNLL 266 (1096)
T ss_pred hHhhh
Confidence 44443
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.31 E-value=1.7e-05 Score=64.96 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=53.2
Q ss_pred ccEEEcCCCCcccccc---ccCCCCccceeecccCCCccccchhhc-cCCCccEeccCCccccccCCccccccCcccEEE
Q 048833 338 LRVLNLSESSIEVCSR---KMGNLKHMRYLDLSRNSKIKKLPKSIC-ELQSLETLDLAGCLELEELPKDIKYLVNLRVLV 413 (629)
Q Consensus 338 L~~L~l~~~~~~~l~~---~~~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 413 (629)
+..++|+.|.+-.+++ .+....+|+..+|++| .+...|..+. +.+.+++|++++| .+.++|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 3444555554433322 2334455555566655 3445554443 3345666666654 5566666666666666666
Q ss_pred ecCcccccCcccCCCCCCCCeEeecCCC
Q 048833 414 LTTKQKSLQESGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 414 l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 441 (629)
++.|.+...+..+..+.+|-.|+..++.
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCc
Confidence 6666555555444445555555544443
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.00013 Score=68.01 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=11.3
Q ss_pred CCCCCccEEEecCCCCCccC
Q 048833 536 GSTDTLRDLFIVSCPNFMAL 555 (629)
Q Consensus 536 ~~~~~L~~L~l~~~~~~~~l 555 (629)
..+++|..|.+..++....+
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cCCchhheeeccCCcccccc
Confidence 35566666666666554433
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=9.8e-06 Score=84.07 Aligned_cols=111 Identities=24% Similarity=0.234 Sum_probs=81.2
Q ss_pred hhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccc-cCCCCccceeecccCCCccccchhhc
Q 048833 302 SLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRK-MGNLKHMRYLDLSRNSKIKKLPKSIC 380 (629)
Q Consensus 302 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~~~ 380 (629)
..+.-++.++.|+++.|.+.... .+..++.|+.|||++|.+..+|.- ...+ +|..|.+++| .++.+-. +.
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g-ie 251 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG-IE 251 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh-HH
Confidence 44555678899999988766432 366788899999999999888763 2333 4999999876 5776654 78
Q ss_pred cCCCccEeccCCccccccCC--ccccccCcccEEEecCcccccC
Q 048833 381 ELQSLETLDLAGCLELEELP--KDIKYLVNLRVLVLTTKQKSLQ 422 (629)
Q Consensus 381 ~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~ 422 (629)
+|.+|+.||+++| .+...- .-++.|..|+.|.|.+|.+-..
T Consensus 252 ~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 9999999999987 333321 1256788889999999877544
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.18 E-value=7.3e-05 Score=79.85 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=26.0
Q ss_pred CCCCccEEEecCCCCCccCCcC-CCC-CCCcCeeecccCccCccC
Q 048833 537 STDTLRDLFIVSCPNFMALPRS-LKD-LEALETLVIARCPKLSSL 579 (629)
Q Consensus 537 ~~~~L~~L~l~~~~~~~~l~~~-~~~-l~~L~~L~l~~c~~l~~l 579 (629)
.+..++.|++..|...+.--.. ... +.+++.+.+.+|..+...
T Consensus 399 ~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 399 RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 3344888888888765532111 111 667788888887766643
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.87 E-value=0.0017 Score=57.39 Aligned_cols=78 Identities=27% Similarity=0.402 Sum_probs=31.7
Q ss_pred cceeecccCCCccccchhhccCCCccEeccCCccccccCCccc-cccCcccEEEecCcccccC--cccCCCCCCCCeEee
Q 048833 361 MRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDI-KYLVNLRVLVLTTKQKSLQ--ESGIRSLGSLRSLKI 437 (629)
Q Consensus 361 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i-~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l 437 (629)
...+||++| .+..++. +..++.|.+|.+.+| .+..+-..+ ..+++|..|.+++|.+... ...+..++.|+.|.+
T Consensus 44 ~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceeccccc-chhhccc-CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344445443 2333332 344445555555444 233332222 2334445555544443322 122334444444444
Q ss_pred cCCC
Q 048833 438 FGCR 441 (629)
Q Consensus 438 ~~~~ 441 (629)
-+|.
T Consensus 121 l~Np 124 (233)
T KOG1644|consen 121 LGNP 124 (233)
T ss_pred cCCc
Confidence 4443
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.65 E-value=0.00049 Score=56.65 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=41.5
Q ss_pred cCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCC
Q 048833 305 SDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQS 384 (629)
Q Consensus 305 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 384 (629)
.....|...++++|.+...+..+ -..++.+..|++++|.+..+|..+..++.|+.|+++.| .+...|..+..|.+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kf----t~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKF----TIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIK 124 (177)
T ss_pred hCCceEEEEecccchhhhCCHHH----hhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHh
Confidence 33344445555555544433332 22334455555555555555555555555555555544 23444444444555
Q ss_pred ccEeccCCc
Q 048833 385 LETLDLAGC 393 (629)
Q Consensus 385 L~~L~l~~~ 393 (629)
|-.|+..+|
T Consensus 125 l~~Lds~~n 133 (177)
T KOG4579|consen 125 LDMLDSPEN 133 (177)
T ss_pred HHHhcCCCC
Confidence 555555443
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.60 E-value=0.0043 Score=54.91 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=76.5
Q ss_pred CCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCC-CCCCCeEeecCCCCcchhh--hhCCCCCccce
Q 048833 382 LQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRS-LGSLRSLKIFGCRDLEHLF--EEIDQLSVLRT 458 (629)
Q Consensus 382 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~ 458 (629)
+.+...+||++| .+..++ .+..++.|..|.+.+|.++.+.+.+.. +++|+.|.+.+|+.. .+. ..+..|+.|+.
T Consensus 41 ~d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence 456778999987 555554 577899999999999999887666654 578999999998742 221 23567889999
Q ss_pred EecccCCCCccc---cccccCCCccceeecccc
Q 048833 459 LSIESCPRLISL---PPAIKYLSSLENLYLARC 488 (629)
Q Consensus 459 L~l~~~~~~~~l---p~~~~~l~~L~~L~l~~~ 488 (629)
|.+-+|+....- -..+..+++|+.||+...
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 998887633221 134677899999998764
No 66
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.54 E-value=0.05 Score=52.94 Aligned_cols=112 Identities=21% Similarity=0.171 Sum_probs=70.8
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCC---CCCCcEEEEEcCChHHHHhhcc-------cCCCCceeCCCCChhhHHH
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLG---GANGSKILVTTRSRKVASIMGT-------RGGTTGFNLQGLPFEDCLS 97 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~---~~~gs~iivTTR~~~v~~~~~~-------~~~~~~~~l~~L~~~~a~~ 97 (629)
.+++++||+||+|.-+...++.+...... ......|++|... +....+.. ......+++++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 67889999999988776677766543221 1222244555543 32222211 0112467899999999999
Q ss_pred HHHHhhcccCCCCCh-hHHHHHHHHHHhcCCCchHHHHHHhhhc
Q 048833 98 LFMKCAFKEERDKHP-NLVKIGVEIVKKCGGIPLAVRTLGSLLY 140 (629)
Q Consensus 98 Lf~~~a~~~~~~~~~-~~~~~~~~i~~~c~glPLal~~~g~~L~ 140 (629)
++....-..+..... --.+....|++.++|.|..+..++..+.
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~ 243 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLL 243 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 887765432211111 1236778899999999999999888773
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.35 E-value=0.002 Score=59.42 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=47.1
Q ss_pred CCCccceeecccCCCccccchhhccCCCccEeccCCc--cccccCCccccccCcccEEEecCcccccC--cccCCCCCCC
Q 048833 357 NLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGC--LELEELPKDIKYLVNLRVLVLTTKQKSLQ--ESGIRSLGSL 432 (629)
Q Consensus 357 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~--~~~~~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L 432 (629)
.+..|+.|++.++ .++.+-. +-.|++|+.|.++.| .....++.-...+++|++|++++|.+..+ ...+..+.+|
T Consensus 41 ~~~~le~ls~~n~-gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhcc-ceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3445555555543 2332222 445677777777776 33344444445667777777777766532 2234555666
Q ss_pred CeEeecCCCC
Q 048833 433 RSLKIFGCRD 442 (629)
Q Consensus 433 ~~L~l~~~~~ 442 (629)
..|+++.|..
T Consensus 119 ~~Ldl~n~~~ 128 (260)
T KOG2739|consen 119 KSLDLFNCSV 128 (260)
T ss_pred hhhhcccCCc
Confidence 6666666653
No 68
>PRK06893 DNA replication initiation factor; Validated
Probab=96.27 E-value=0.02 Score=54.00 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=65.9
Q ss_pred eEEEEEecCCCCC-hhhHH-HHHHhhCCC-CCCcEEEEEcCC----------hHHHHhhcccCCCCceeCCCCChhhHHH
Q 048833 31 RYLLVMDDVWNED-PEAWC-KLKSLLLGG-ANGSKILVTTRS----------RKVASIMGTRGGTTGFNLQGLPFEDCLS 97 (629)
Q Consensus 31 ~~LivlDdv~~~~-~~~~~-~~~~~~~~~-~~gs~iivTTR~----------~~v~~~~~~~~~~~~~~l~~L~~~~a~~ 97 (629)
.-+|||||+|... ...|. .+...+... ..|+.|||+|.+ +++..++.. ...+++++++.++.++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~---g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTW---GEIYQLNDLTDEQKII 168 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhc---CCeeeCCCCCHHHHHH
Confidence 3589999998632 34565 233333321 346666555443 356665543 2689999999999999
Q ss_pred HHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 048833 98 LFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLL 139 (629)
Q Consensus 98 Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L 139 (629)
++.+.++..+...++ ++..-+++++.|-.-++..+=..|
T Consensus 169 iL~~~a~~~~l~l~~---~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 169 VLQRNAYQRGIELSD---EVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999765544333 456678888888766655444333
No 69
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.22 E-value=0.055 Score=54.25 Aligned_cols=157 Identities=16% Similarity=0.092 Sum_probs=87.3
Q ss_pred CcEEEEEcCChHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 048833 60 GSKILVTTRSRKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLL 139 (629)
Q Consensus 60 gs~iivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L 139 (629)
.+-|..|||...+......+. ...+++++++.++..+++.+.+...+....+ +.+..|++.|+|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf-~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~---~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRF-GIVQRLEFYTVEELEKIVKRSARILGVEIDE---EGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHHhc-CeeeecCCCCHHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHcCCCchHHHHHHHHH
Confidence 345666777544433332221 2568999999999999999887554433322 457799999999997655555433
Q ss_pred cCCCCHHHHHHHhhhhccccccccCCcchhhhcccccCChhhhhhhh-hhccCCCCceeChHhHHHHHHHcCCcccCCCC
Q 048833 140 YDSTDEHFWEYVRDNEIWQLEQKESGILPALRLSYDQLPPRLKQCVA-YCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKK 218 (629)
Q Consensus 140 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl-~~~~fp~~~~~~~~~l~~~wi~eg~i~~~~~~ 218 (629)
. .|.......... ...-....+.+...|..|++..+..+. ....|..+ .+....+...+ | . .
T Consensus 227 ~------~~a~~~~~~~I~-~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---~--~- 289 (328)
T PRK00080 227 R------DFAQVKGDGVIT-KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---E--E- 289 (328)
T ss_pred H------HHHHHcCCCCCC-HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---C--C-
Confidence 2 122111110000 000112234466788899988888775 55566554 45444443221 1 0 0
Q ss_pred ccHHHHHHHHHH-HHHhCCceee
Q 048833 219 EDLEDIGMRYLK-ELLSRSFFQD 240 (629)
Q Consensus 219 ~~~~~~~~~~l~-~L~~r~ll~~ 240 (629)
.+.+++.++ .|++.+++..
T Consensus 290 ---~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 290 ---RDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred ---cchHHHHhhHHHHHcCCccc
Confidence 122444455 7777888764
No 70
>PF05729 NACHT: NACHT domain
Probab=96.22 E-value=0.029 Score=49.87 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=49.4
Q ss_pred CCceEEEEEecCCCCCh--h-----hHHH-HHHhhCC-CCCCcEEEEEcCChHHHHhhcccCCCCceeCCCCChhhHHHH
Q 048833 28 KGKRYLLVMDDVWNEDP--E-----AWCK-LKSLLLG-GANGSKILVTTRSRKVASIMGTRGGTTGFNLQGLPFEDCLSL 98 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~--~-----~~~~-~~~~~~~-~~~gs~iivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~a~~L 98 (629)
+.++++||+|++++-.. . .+.. +...+.. ..++.+||||||................++++++++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 57899999999966322 1 1222 2233332 357899999999976632221111226799999999999998
Q ss_pred HHHh
Q 048833 99 FMKC 102 (629)
Q Consensus 99 f~~~ 102 (629)
+.+.
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8654
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.07 E-value=0.0077 Score=55.76 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=42.8
Q ss_pred hhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcc
Q 048833 301 SSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIE 349 (629)
Q Consensus 301 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 349 (629)
...+.+|++++..+++.|.++...+..+.+.++....|..|.+++|.+.
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 4667799999999999999988888888888999999999999998865
No 72
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.00 E-value=1.1 Score=46.35 Aligned_cols=227 Identities=11% Similarity=0.034 Sum_probs=120.2
Q ss_pred cHHHHHHHHHHHcC--CceEEEEEecCCCCC----hhhHHHHHHhhCCCCCCcE--EEEEcCChHHHHhhc----ccCCC
Q 048833 15 NLDQLQKVLRYSLK--GKRYLLVMDDVWNED----PEAWCKLKSLLLGGANGSK--ILVTTRSRKVASIMG----TRGGT 82 (629)
Q Consensus 15 ~~~~~~~~l~~~L~--~k~~LivlDdv~~~~----~~~~~~~~~~~~~~~~gs~--iivTTR~~~v~~~~~----~~~~~ 82 (629)
+.+++.+.+.+.++ ++.++||||+++.-. .+.+..+...+.. ..+++ ||.++.+.++..... ..-..
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~ 199 (394)
T PRK00411 121 SFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRP 199 (394)
T ss_pred CHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCc
Confidence 45666677777765 456899999996521 2233344333332 23444 677777665433221 11122
Q ss_pred CceeCCCCChhhHHHHHHHhhccc---CCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhc----CCC---CHHHHHHHh
Q 048833 83 TGFNLQGLPFEDCLSLFMKCAFKE---ERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLY----DST---DEHFWEYVR 152 (629)
Q Consensus 83 ~~~~l~~L~~~~a~~Lf~~~a~~~---~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~----~~~---~~~~w~~~~ 152 (629)
..+.+++.+.++..+++...+-.+ ..-.+..++.+++.+....|..+.|+..+-.+.. ... +.+..+.+.
T Consensus 200 ~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~ 279 (394)
T PRK00411 200 EEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAY 279 (394)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 567899999999999998776321 1112223444455454446668888877654321 111 222232222
Q ss_pred hhhccccccccCCcchhhhcccccCChhhhhhhhhhccCCC--CceeChHhHHHH--HHHcCCcccCCCCccHHHHHHHH
Q 048833 153 DNEIWQLEQKESGILPALRLSYDQLPPRLKQCVAYCSIFPK--DFKFDSYDLVQF--WMAHGLLQSHNKKEDLEDIGMRY 228 (629)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~fp~--~~~~~~~~l~~~--wi~eg~i~~~~~~~~~~~~~~~~ 228 (629)
+.. -.....-.+.+||.+.|..+..++.... ...+...++... .+++.+- ....-......+
T Consensus 280 ~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~----~~~~~~~~~~~~ 345 (394)
T PRK00411 280 EKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG----YEPRTHTRFYEY 345 (394)
T ss_pred HHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC----CCcCcHHHHHHH
Confidence 211 0122344678999998887766553321 123444444322 1222111 001012446779
Q ss_pred HHHHHhCCceeeccc--CCCCceEEEEEeCh
Q 048833 229 LKELLSRSFFQDLTF--GMFGLEVLTFKMHD 257 (629)
Q Consensus 229 l~~L~~r~ll~~~~~--~~~~~~~~~~~mhd 257 (629)
+..|...+++..... +..| +...++.+.
T Consensus 346 l~~L~~~glI~~~~~~~g~~g-~~~~~~~~~ 375 (394)
T PRK00411 346 INKLDMLGIINTRYSGKGGRG-RTRLISLSY 375 (394)
T ss_pred HHHHHhcCCeEEEEecCCCCC-CeEEEEecC
Confidence 999999999986542 3344 455555543
No 73
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.74 E-value=0.14 Score=50.80 Aligned_cols=156 Identities=17% Similarity=0.104 Sum_probs=86.4
Q ss_pred CcEEEEEcCChHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 048833 60 GSKILVTTRSRKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLL 139 (629)
Q Consensus 60 gs~iivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L 139 (629)
.+-|..||+...+......+. ...+++++++.++..+++...+...+...+ .+....+++.|+|.|-.+..++..+
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~-~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~ 205 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRF-GIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV 205 (305)
T ss_pred eEEEEecCCccccCHHHHhhc-ceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH
Confidence 455566677654433322221 256899999999999999988754333222 2456789999999997766555433
Q ss_pred cCCCCHHHHHHH--hhhhccccccccCCcchhhhcccccCChhhhhhhh-hhccCCCCceeChHhHHHHHHHcCCcccCC
Q 048833 140 YDSTDEHFWEYV--RDNEIWQLEQKESGILPALRLSYDQLPPRLKQCVA-YCSIFPKDFKFDSYDLVQFWMAHGLLQSHN 216 (629)
Q Consensus 140 ~~~~~~~~w~~~--~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl-~~~~fp~~~~~~~~~l~~~wi~eg~i~~~~ 216 (629)
|... .+......+ .-......+..+|.+++++.+..+. ..+.+..+ .+...++.... |.
T Consensus 206 --------~~~a~~~~~~~it~~-~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~----- 267 (305)
T TIGR00635 206 --------RDFAQVRGQKIINRD-IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE----- 267 (305)
T ss_pred --------HHHHHHcCCCCcCHH-HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC-----
Confidence 1111 000000000 0011122256678899988887776 33555433 34443333221 11
Q ss_pred CCccHHHHHHHHHH-HHHhCCceeec
Q 048833 217 KKEDLEDIGMRYLK-ELLSRSFFQDL 241 (629)
Q Consensus 217 ~~~~~~~~~~~~l~-~L~~r~ll~~~ 241 (629)
....+...++ .|++.+++...
T Consensus 268 ----~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 268 ----DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred ----CcchHHHhhhHHHHHcCCcccC
Confidence 1223555566 69999998643
No 74
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.61 E-value=0.16 Score=55.18 Aligned_cols=222 Identities=18% Similarity=0.159 Sum_probs=131.3
Q ss_pred CcHHHHHHHHHHHcC--CceEEEEEecCCCCChhhHHHHHHhhC-CCCCCcEEEEEcCChHHHHhhcccCCCCceeCC--
Q 048833 14 SNLDQLQKVLRYSLK--GKRYLLVMDDVWNEDPEAWCKLKSLLL-GGANGSKILVTTRSRKVASIMGTRGGTTGFNLQ-- 88 (629)
Q Consensus 14 ~~~~~~~~~l~~~L~--~k~~LivlDdv~~~~~~~~~~~~~~~~-~~~~gs~iivTTR~~~v~~~~~~~~~~~~~~l~-- 88 (629)
.++.++...+...+. .++..+||||..-........-...+. -..++=.+|||||...-..-..-.-.....++.
T Consensus 111 ~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~ 190 (894)
T COG2909 111 VSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSE 190 (894)
T ss_pred ccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChH
Confidence 344444455555444 357899999986543333332222333 335677899999997432211111111233333
Q ss_pred --CCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCCCCHHHHHHHhhhhccccccccCCc
Q 048833 89 --GLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDSTDEHFWEYVRDNEIWQLEQKESGI 166 (629)
Q Consensus 89 --~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~ 166 (629)
.++.+|+-++|..... .+.+ ..-++.+.+..+|=+-|+..++-.++...+.+.--... .+...-+
T Consensus 191 ~Lrf~~eE~~~fl~~~~~---l~Ld---~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L-------sG~~~~l 257 (894)
T COG2909 191 ELRFDTEEAAAFLNDRGS---LPLD---AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL-------SGAASHL 257 (894)
T ss_pred hhcCChHHHHHHHHHcCC---CCCC---hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc-------cchHHHH
Confidence 5889999999977651 1111 23467889999999999999998888444433211111 1111112
Q ss_pred ch-hhhcccccCChhhhhhhhhhccCCCCceeChHhHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCCceeecccCC
Q 048833 167 LP-ALRLSYDQLPPRLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGM 245 (629)
Q Consensus 167 ~~-~l~~sy~~L~~~~k~~fl~~~~fp~~~~~~~~~l~~~wi~eg~i~~~~~~~~~~~~~~~~l~~L~~r~ll~~~~~~~ 245 (629)
.+ ...--+|.||++.|..++-+|+++... ..|+....+ ++.+...+++|-+++++...-++.
T Consensus 258 ~dYL~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~Ltg-------------~~ng~amLe~L~~~gLFl~~Ldd~ 320 (894)
T COG2909 258 SDYLVEEVLDRLPPELRDFLLQTSVLSRFN----DELCNALTG-------------EENGQAMLEELERRGLFLQRLDDE 320 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHHHhc-------------CCcHHHHHHHHHhCCCceeeecCC
Confidence 22 233457899999999999998874321 223322221 123677799999999886544333
Q ss_pred CCceEEEEEeChhHHHHHHHHhcc
Q 048833 246 FGLEVLTFKMHDLMHDLAMLVAKD 269 (629)
Q Consensus 246 ~~~~~~~~~mhd~~~~~~~~~~~~ 269 (629)
...++.|.++.+|-+.-...
T Consensus 321 ----~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 321 ----GQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ----CceeehhHHHHHHHHhhhcc
Confidence 34799999999987765443
No 75
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.55 E-value=0.0044 Score=57.27 Aligned_cols=102 Identities=23% Similarity=0.207 Sum_probs=60.8
Q ss_pred ccccEEEcCCCCccccccccCCCCccceeecccC--CCccccchhhccCCCccEeccCCccccccCCc---cccccCccc
Q 048833 336 QFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRN--SKIKKLPKSICELQSLETLDLAGCLELEELPK---DIKYLVNLR 410 (629)
Q Consensus 336 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~---~i~~l~~L~ 410 (629)
..|..|++.+..+..+ ..+..|++|++|.++.| .....++....++++|++|++++|. +.. ++ .+..+.+|.
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhcchh
Confidence 3455555555555544 34567788888888877 3334555555667888888888873 332 22 245677777
Q ss_pred EEEecCcccccC----cccCCCCCCCCeEeecCC
Q 048833 411 VLVLTTKQKSLQ----ESGIRSLGSLRSLKIFGC 440 (629)
Q Consensus 411 ~L~l~~~~~~~~----~~~~~~l~~L~~L~l~~~ 440 (629)
.|++..|..... ...+.-+++|..|+-...
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 888777654432 123344555555554443
No 76
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.0025 Score=59.05 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=51.8
Q ss_pred cceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccccc--ccCCCCcc
Q 048833 284 SVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSR--KMGNLKHM 361 (629)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~l~~L 361 (629)
+++.+.+.++.+... ....+|+.|..|.|+-|.+..... +..|+.|+.|.|..|.|..+-. -+.++++|
T Consensus 20 ~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 345555555555544 444566666666666655543322 4456666666666666654432 24556666
Q ss_pred ceeecccCCCccccch-----hhccCCCccEec
Q 048833 362 RYLDLSRNSKIKKLPK-----SICELQSLETLD 389 (629)
Q Consensus 362 ~~L~l~~~~~~~~lp~-----~~~~l~~L~~L~ 389 (629)
+.|.|..|.....-+. .+.-|++|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666665544332222 233455555554
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.0032 Score=58.39 Aligned_cols=99 Identities=26% Similarity=0.224 Sum_probs=64.6
Q ss_pred CCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccch--hhccCCC
Q 048833 307 LGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPK--SICELQS 384 (629)
Q Consensus 307 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~ 384 (629)
+.+++.|++.++.+..+ ..+..|+.|++|.|+-|+|..+ ..+..+++|+.|.|+.| .+..+.. .+.++++
T Consensus 18 l~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHH------HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCch
Confidence 45667777777665533 2356788889999988888876 34778888888888877 4554432 3567778
Q ss_pred ccEeccCCccccccCCc-----cccccCcccEEE
Q 048833 385 LETLDLAGCLELEELPK-----DIKYLVNLRVLV 413 (629)
Q Consensus 385 L~~L~l~~~~~~~~lp~-----~i~~l~~L~~L~ 413 (629)
|++|-|..|.-...-+. .+..|++|+.|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88877766533333222 234566666665
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.51 E-value=0.025 Score=30.80 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=8.2
Q ss_pred ccEEEcCCCCcccccccc
Q 048833 338 LRVLNLSESSIEVCSRKM 355 (629)
Q Consensus 338 L~~L~l~~~~~~~l~~~~ 355 (629)
|++|++++|.++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444433
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.40 E-value=0.16 Score=42.75 Aligned_cols=34 Identities=9% Similarity=0.264 Sum_probs=10.4
Q ss_pred hcCccccEEEcCCCCccccccc-cCCCCccceeecc
Q 048833 333 SKSQFLRVLNLSESSIEVCSRK-MGNLKHMRYLDLS 367 (629)
Q Consensus 333 ~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~ 367 (629)
..+..|+.+.+.. .+..++.. +.++.+|+.+.+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFP 43 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEES
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccc
Confidence 3344444444432 23333322 3444444444444
No 80
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.30 E-value=0.29 Score=46.13 Aligned_cols=102 Identities=22% Similarity=0.180 Sum_probs=51.7
Q ss_pred ceEEEEEecCCCCC------hhhHHHHHHhhCC---CCCCcEEEEEcCChHHHHh-hc----ccCCCCceeCCCCChhhH
Q 048833 30 KRYLLVMDDVWNED------PEAWCKLKSLLLG---GANGSKILVTTRSRKVASI-MG----TRGGTTGFNLQGLPFEDC 95 (629)
Q Consensus 30 k~~LivlDdv~~~~------~~~~~~~~~~~~~---~~~gs~iivTTR~~~v~~~-~~----~~~~~~~~~l~~L~~~~a 95 (629)
++++||+||+..-. ......+...+.. ..+.+ +|+++....+... .. ..+....+.+++++.+++
T Consensus 118 ~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 196 (234)
T PF01637_consen 118 KKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEA 196 (234)
T ss_dssp CCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHH
T ss_pred CcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHH
Confidence 45999999995422 1112233333332 33344 4455444444433 11 011124599999999999
Q ss_pred HHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHH
Q 048833 96 LSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRT 134 (629)
Q Consensus 96 ~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 134 (629)
++++...+-.. ... +.-.....+|...++|.|..|.-
T Consensus 197 ~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 197 REFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 99998865332 111 11234457899999999987753
No 81
>COG3899 Predicted ATPase [General function prediction only]
Probab=94.12 E-value=0.33 Score=54.96 Aligned_cols=199 Identities=15% Similarity=0.138 Sum_probs=118.7
Q ss_pred HHHHHcC-CceEEEEEecCCCCChhhHHHHHHhhCCCC----CCcEEEEEcCChHHHHhh-cccCCCCceeCCCCChhhH
Q 048833 22 VLRYSLK-GKRYLLVMDDVWNEDPEAWCKLKSLLLGGA----NGSKILVTTRSRKVASIM-GTRGGTTGFNLQGLPFEDC 95 (629)
Q Consensus 22 ~l~~~L~-~k~~LivlDdv~~~~~~~~~~~~~~~~~~~----~gs~iivTTR~~~v~~~~-~~~~~~~~~~l~~L~~~~a 95 (629)
.+..... .|+..+|+||+...|....+-+........ ....|..+...+...... ........+.+.+|+..+.
T Consensus 145 ~i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~ 224 (849)
T COG3899 145 FIQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADT 224 (849)
T ss_pred HHHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhH
Confidence 3444443 569999999997777666655554443322 112333333333322222 2222347899999999999
Q ss_pred HHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCC------CCHHHHHHHhhhhccccccccCCcchh
Q 048833 96 LSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDS------TDEHFWEYVRDNEIWQLEQKESGILPA 169 (629)
Q Consensus 96 ~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~~ 169 (629)
-++......... ....+.+..|+++..|.|+-+.-+-..+... .+...|.. +..........+.+.+.
T Consensus 225 ~~lV~~~l~~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~--~~~~i~~~~~~~~vv~~ 298 (849)
T COG3899 225 NQLVAATLGCTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQC--SIASLGILATTDAVVEF 298 (849)
T ss_pred HHHHHHHhCCcc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceec--cHHhcCCchhhHHHHHH
Confidence 998876663321 2334677899999999999999888888763 22233321 11101111112236667
Q ss_pred hhcccccCChhhhhhhhhhccCCCCceeChHhHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCCcee
Q 048833 170 LRLSYDQLPPRLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQ 239 (629)
Q Consensus 170 l~~sy~~L~~~~k~~fl~~~~fp~~~~~~~~~l~~~wi~eg~i~~~~~~~~~~~~~~~~l~~L~~r~ll~ 239 (629)
+.--.+.||...|+.....||+...+ +...+...+- +.....+....+.|....++.
T Consensus 299 l~~rl~kL~~~t~~Vl~~AA~iG~~F--~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~ 355 (849)
T COG3899 299 LAARLQKLPGTTREVLKAAACIGNRF--DLDTLAALAE-----------DSPALEAAALLDALQEGLILP 355 (849)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhCccC--CHHHHHHHHh-----------hchHHHHHHHHHHhHhhceec
Confidence 88889999999999999999997554 4444444332 123444555555555544443
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.82 E-value=0.35 Score=40.71 Aligned_cols=103 Identities=15% Similarity=0.281 Sum_probs=51.0
Q ss_pred ccCCCCccceeecccCCCccccc-hhhccCCCccEeccCCccccccCCc-cccccCcccEEEecCcccccCcccCCCCCC
Q 048833 354 KMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLETLDLAGCLELEELPK-DIKYLVNLRVLVLTTKQKSLQESGIRSLGS 431 (629)
Q Consensus 354 ~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 431 (629)
.+.++.+|+.+.+.. .+..++ ..+..+++|+.+.+..+ +..++. .+..+++|+.+.+..+........+..+++
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccccccccccccccccc
Confidence 366677888888763 344444 34677778888888763 444443 356676788888865433344455666777
Q ss_pred CCeEeecCCCCcchh-hhhCCCCCccceEeccc
Q 048833 432 LRSLKIFGCRDLEHL-FEEIDQLSVLRTLSIES 463 (629)
Q Consensus 432 L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~ 463 (629)
|+.+.+..+ +..+ ...+..+ +|+.+.+..
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 777777543 2222 2335555 677776643
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.79 E-value=0.032 Score=30.38 Aligned_cols=20 Identities=40% Similarity=0.791 Sum_probs=10.7
Q ss_pred ccceeecccCCCccccchhhc
Q 048833 360 HMRYLDLSRNSKIKKLPKSIC 380 (629)
Q Consensus 360 ~L~~L~l~~~~~~~~lp~~~~ 380 (629)
+|++|++++| .++.+|..|+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 3556666655 4445555444
No 84
>PF13173 AAA_14: AAA domain
Probab=93.27 E-value=0.2 Score=42.24 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=51.2
Q ss_pred HHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhh-cc--cCCCCceeCCCCChhhH
Q 048833 20 QKVLRYSLKGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVASIM-GT--RGGTTGFNLQGLPFEDC 95 (629)
Q Consensus 20 ~~~l~~~L~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~-~~--~~~~~~~~l~~L~~~~a 95 (629)
.+.+.+....++.+|+||+|. ...+|......+.+..+..+||+|+........- .. .+....++|.+|+..|-
T Consensus 51 ~~~~~~~~~~~~~~i~iDEiq--~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 51 LEYFLELIKPGKKYIFIDEIQ--YLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHhhccCCcEEEEehhh--hhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 345555555578899999994 4457877777777666778999999988776431 11 12234688999988763
No 85
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.77 E-value=0.81 Score=46.31 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=69.6
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHH-HHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKV-ASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v-~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+||+...+......+...+..-..++.+|++|.+.+- ..... .....+.+.+++.++..+.+......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~--SRc~~i~l~~l~~~~i~~~L~~~~~~-- 215 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIR--SRCRKLRLRPLAPEDVIDALAAAGPD-- 215 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhh--ccceEEECCCCCHHHHHHHHHHhccc--
Confidence 45678999999888888888888877765567778888877643 22222 22478999999999999998776411
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRTLG 136 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~~g 136 (629)
. .+ .. ...++..++|.|+....+.
T Consensus 216 -~-~~--~~-~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 216 -L-PD--DP-RAALAALAEGSVGRALRLA 239 (365)
T ss_pred -C-CH--HH-HHHHHHHcCCCHHHHHHHh
Confidence 1 11 11 2578899999998665543
No 86
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.44 E-value=2.1 Score=45.36 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=69.6
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEc-CChHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTT-RSRKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTT-R~~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.+++-++|+|+++.-....|..+...+......+++|++| +...+......+ ...+++++++.++..+.+...+-..
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SR--c~~~ef~~ls~~el~~~L~~i~~~e 203 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISR--CQRYDLRRLSFEEIFKLLEYITKQE 203 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhc--ceEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567789999998777778888888887655666766554 444555444432 3679999999999999998887544
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchHH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
+....+ +....|++.++|-+.-+
T Consensus 204 gi~ie~---eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 204 NLKTDI---EALRIIAYKSEGSARDA 226 (507)
T ss_pred CCCCCH---HHHHHHHHHcCCCHHHH
Confidence 332222 34456888898866443
No 87
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.93 E-value=0.91 Score=41.27 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=65.0
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+.+-++|+|++..-....++.+...+......+.+|++|++. .+......+ ...+++.+++.++..+.+....
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr--~~~~~~~~~~~~~~~~~l~~~g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR--CQVLPFPPLSEEALLQWLIRQG---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh--cEEeeCCCCCHHHHHHHHHHcC----
Confidence 556689999997766667788888887666677788777654 333333332 3689999999999888877761
Q ss_pred CCCChhHHHHHHHHHHhcCCCch
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPL 130 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPL 130 (629)
. . ...+..+++.++|.|.
T Consensus 169 i--~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 I--S---EEAAELLLALAGGSPG 186 (188)
T ss_pred C--C---HHHHHHHHHHcCCCcc
Confidence 1 1 2457789999999885
No 88
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=91.65 E-value=1.8 Score=43.01 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=67.5
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHH-HhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVA-SIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~-~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.+++=++|+|+++......|..+...+..-..++.+|++|.+.+.. ....++ ...+++.+++.++..+.+.... ..
T Consensus 91 ~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR--c~~~~~~~~~~~~~~~~l~~~~-~~ 167 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR--CQIYKLNRLSKEEIEKFISYKY-ND 167 (313)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh--ceeeeCCCcCHHHHHHHHHHHh-cC
Confidence 3455577778887777788999999998877899999998766422 222222 3789999999999877665443 11
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchHHH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLAVR 133 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLal~ 133 (629)
.. ...+..++..++|.|..+.
T Consensus 168 ---~~---~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 168 ---IK---EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ---CC---HHHHHHHHHHcCCCHHHHH
Confidence 11 1235678889999886544
No 89
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.37 E-value=1.1 Score=42.16 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=59.8
Q ss_pred EEEEEecCCCCChh-hH-HHHHHhhCC-CCCCcEEEEEcCChH---------HHHhhcccCCCCceeCCCCChhhHHHHH
Q 048833 32 YLLVMDDVWNEDPE-AW-CKLKSLLLG-GANGSKILVTTRSRK---------VASIMGTRGGTTGFNLQGLPFEDCLSLF 99 (629)
Q Consensus 32 ~LivlDdv~~~~~~-~~-~~~~~~~~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~~~~l~~L~~~~a~~Lf 99 (629)
-+||+||++.-... .| ..+...+.. ...+.+||+||+... +...+.. ...+++++++.++...++
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~---~~~i~l~~l~~~e~~~~l 168 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW---GLVFQLPPLSDEEKIAAL 168 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc---CeeEecCCCCHHHHHHHH
Confidence 37999999653221 23 334433322 123457999988532 2222221 257999999999999998
Q ss_pred HHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHh
Q 048833 100 MKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGS 137 (629)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~ 137 (629)
...+-..+....+ +..+.+++.+.|.|..+..+-.
T Consensus 169 ~~~~~~~~~~~~~---~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 169 QSRAARRGLQLPD---EVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHHHH
Confidence 7755322322222 4456777789998887765543
No 90
>PRK09087 hypothetical protein; Validated
Probab=91.33 E-value=1.9 Score=40.46 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=59.7
Q ss_pred EEEEEecCCCC--ChhhHHHHHHhhCCCCCCcEEEEEcCC---------hHHHHhhcccCCCCceeCCCCChhhHHHHHH
Q 048833 32 YLLVMDDVWNE--DPEAWCKLKSLLLGGANGSKILVTTRS---------RKVASIMGTRGGTTGFNLQGLPFEDCLSLFM 100 (629)
Q Consensus 32 ~LivlDdv~~~--~~~~~~~~~~~~~~~~~gs~iivTTR~---------~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~ 100 (629)
-+|++||+.-. +++.+-.+...+. ..|..||+|++. +++..++.. ..++++++++.++-.+++.
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~---gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKA---ATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhC---CceeecCCCCHHHHHHHHH
Confidence 37888999532 3333333333333 346779999874 334444433 2789999999999999999
Q ss_pred HhhcccCCCCChhHHHHHHHHHHhcCCCchHHHH
Q 048833 101 KCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRT 134 (629)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 134 (629)
+.+-..+...+ +++..-+++.+.|-.-++..
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 88854333322 34556677777776665553
No 91
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.30 E-value=0.14 Score=25.80 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=5.5
Q ss_pred ccEEEcCCCCcccc
Q 048833 338 LRVLNLSESSIEVC 351 (629)
Q Consensus 338 L~~L~l~~~~~~~l 351 (629)
|+.|++++|.++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 45555555554444
No 92
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.19 E-value=18 Score=36.90 Aligned_cols=212 Identities=12% Similarity=0.072 Sum_probs=107.0
Q ss_pred HHHHHHHHHHcC--CceEEEEEecCCCC---ChhhHHHHHHhh-CCCC--CCcEEEEEcCChHHHHhh----cccCCCCc
Q 048833 17 DQLQKVLRYSLK--GKRYLLVMDDVWNE---DPEAWCKLKSLL-LGGA--NGSKILVTTRSRKVASIM----GTRGGTTG 84 (629)
Q Consensus 17 ~~~~~~l~~~L~--~k~~LivlDdv~~~---~~~~~~~~~~~~-~~~~--~gs~iivTTR~~~v~~~~----~~~~~~~~ 84 (629)
++..+.+.+.+. +++++||||+++.- +++....+.... .... ..-.+|++|.+.+....+ ........
T Consensus 114 ~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~ 193 (365)
T TIGR02928 114 SEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEE 193 (365)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcce
Confidence 444455555553 56889999999653 111122222221 1111 233456666555432222 11111246
Q ss_pred eeCCCCChhhHHHHHHHhhccc--CCCCChhHHHHHHHHHHhcCCCch-HHHHHHhhh----cCC---CCHHHHHHHhhh
Q 048833 85 FNLQGLPFEDCLSLFMKCAFKE--ERDKHPNLVKIGVEIVKKCGGIPL-AVRTLGSLL----YDS---TDEHFWEYVRDN 154 (629)
Q Consensus 85 ~~l~~L~~~~a~~Lf~~~a~~~--~~~~~~~~~~~~~~i~~~c~glPL-al~~~g~~L----~~~---~~~~~w~~~~~~ 154 (629)
+.+++.+.++..+++...+-.. .....++..+...+++....|.|. |+..+-.+. ... -+.+..+.+.+.
T Consensus 194 i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 194 IIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEK 273 (365)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 8899999999999998876311 111223444555566777778774 333332221 111 112222211111
Q ss_pred hccccccccCCcchhhhcccccCChhhhhhhhhhccC--CCCceeChHhHHHHHH--HcCCcccCCCCccHHHHHHHHHH
Q 048833 155 EIWQLEQKESGILPALRLSYDQLPPRLKQCVAYCSIF--PKDFKFDSYDLVQFWM--AHGLLQSHNKKEDLEDIGMRYLK 230 (629)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f--p~~~~~~~~~l~~~wi--~eg~i~~~~~~~~~~~~~~~~l~ 230 (629)
. -.....-+..+||.+.|..+..++.. .++..+...++...+. ++.+ +...........++.
T Consensus 274 ~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~----~~~~~~~~~~~~~l~ 339 (365)
T TIGR02928 274 I----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI----GVDPLTQRRISDLLN 339 (365)
T ss_pred H----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc----CCCCCcHHHHHHHHH
Confidence 0 01223346678888888776655422 1233345555544221 1211 111122466788899
Q ss_pred HHHhCCceeecc
Q 048833 231 ELLSRSFFQDLT 242 (629)
Q Consensus 231 ~L~~r~ll~~~~ 242 (629)
.|...+++....
T Consensus 340 ~l~~~gli~~~~ 351 (365)
T TIGR02928 340 ELDMLGLVEAEE 351 (365)
T ss_pred HHHhcCCeEEEE
Confidence 999999998653
No 93
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.09 E-value=1.4 Score=45.72 Aligned_cols=105 Identities=20% Similarity=0.185 Sum_probs=64.5
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEE--EcCChH--HHHhhcccCCCCceeCCCCChhhHHHHHHHhh
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILV--TTRSRK--VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCA 103 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iiv--TTR~~~--v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 103 (629)
.+++.+|++|+++.-...+.+.+...+. .|..++| ||.+.. +......+ ...+++++++.++.++++.+..
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR--~~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSR--AQVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcc--ceeeEeCCCCHHHHHHHHHHHH
Confidence 4578899999998766556666665553 3555555 344332 21222222 3679999999999999998865
Q ss_pred cccCCCCChhHHHHHHHHHHhcCCCchHHHHHHh
Q 048833 104 FKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGS 137 (629)
Q Consensus 104 ~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~ 137 (629)
.........--......+++.|+|-+..+..+-.
T Consensus 165 ~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 165 EDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3211110011134566788999998877654443
No 94
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.78 E-value=0.0082 Score=62.63 Aligned_cols=43 Identities=23% Similarity=0.166 Sum_probs=24.0
Q ss_pred CcCCCCCCCcCeeecccCccCccCCcC-----CCCCCCcCeEeeeCCCc
Q 048833 556 PRSLKDLEALETLVIARCPKLSSLPEG-----MHHVTTLKLLTIGGCPA 599 (629)
Q Consensus 556 ~~~~~~l~~L~~L~l~~c~~l~~lp~~-----~~~l~~L~~L~l~~c~~ 599 (629)
+..+...+.++.++++.|......+.. -... .++.+.++.++.
T Consensus 397 ~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~ 444 (478)
T KOG4308|consen 397 AAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPI 444 (478)
T ss_pred hhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChh
Confidence 344556677777777775443332211 1233 677777776664
No 95
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=90.56 E-value=1 Score=49.20 Aligned_cols=118 Identities=22% Similarity=0.153 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEE--EcCChHH-HHhhcccCCCCceeCCCCChh
Q 048833 17 DQLQKVLRYSLKGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILV--TTRSRKV-ASIMGTRGGTTGFNLQGLPFE 93 (629)
Q Consensus 17 ~~~~~~l~~~L~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iiv--TTR~~~v-~~~~~~~~~~~~~~l~~L~~~ 93 (629)
...+..+.+.++.++++++-|+.|..+...|+.++..+....+...|++ ||++... ...+..+ ...+.+.+++.+
T Consensus 279 ~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR--~~~i~~~pls~e 356 (615)
T TIGR02903 279 PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSR--CAEVFFEPLTPE 356 (615)
T ss_pred HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhc--eeEEEeCCCCHH
Confidence 3457889999999999999888888777788888877776656665665 6665432 2222221 246788999999
Q ss_pred hHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 048833 94 DCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLL 139 (629)
Q Consensus 94 ~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L 139 (629)
|.++++.+.+-....... ..+...|++++..-+-|+..++.+.
T Consensus 357 di~~Il~~~a~~~~v~ls---~eal~~L~~ys~~gRraln~L~~~~ 399 (615)
T TIGR02903 357 DIALIVLNAAEKINVHLA---AGVEELIARYTIEGRKAVNILADVY 399 (615)
T ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 999999987643222221 2344556666655566776665553
No 96
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.06 E-value=2.6 Score=42.85 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=67.7
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|++.......++.+...+.......++|++|.+.+ +......+ ...+++++++.++..+.+...+-..+
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR--c~~~~~~~l~~~el~~~L~~~~~~~g 195 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR--CLQFKLKIISEEKIFNFLKYILIKES 195 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh--ceEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 4556899999977666678778777776566777888776643 33333322 36799999999999888877664333
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
.... ...+..+++.++|-|..+
T Consensus 196 ~~i~---~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 196 IDTD---EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHH
Confidence 2222 234567888999977643
No 97
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=89.20 E-value=2.4 Score=42.72 Aligned_cols=101 Identities=11% Similarity=0.113 Sum_probs=68.0
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|+++..+....+.+...+.....+..+|++|... .+.....++ ...+++.+++.++..+.+........
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSR--c~~i~l~pl~~~~~~~~L~~~~~~~~ 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSR--CQPISLKPLDDDELKKALSHLGSSQG 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhh--ccEEEecCCCHHHHHHHHHHhhcccC
Confidence 566789999998877777777777776544556655555444 333333322 37899999999999999887432111
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRTLG 136 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~~g 136 (629)
.. ......+++.++|.|.....+.
T Consensus 218 --~~---~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 218 --SD---GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred --CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 11 2345688999999998655443
No 98
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.14 E-value=4.7 Score=43.59 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=69.8
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.++.-++|+|+++......++.+...+..-..+.++|++|.+. .+.....++ ...|.++.++.++..+.+.+.+-..
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR--Cq~f~f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR--CLQFNLKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH--HHhcccCCCChHHHHHHHHHHHHHc
Confidence 4566789999998877788888888776655666766666554 444333332 3779999999999999888766333
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchHHHHH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLAVRTL 135 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLal~~~ 135 (629)
+.... ......|++.++|.|.....+
T Consensus 200 gi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 200 GIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22222 234467899999988654433
No 99
>PRK08727 hypothetical protein; Validated
Probab=88.25 E-value=3.6 Score=38.85 Aligned_cols=97 Identities=13% Similarity=-0.004 Sum_probs=58.2
Q ss_pred ceEEEEEecCCCCC-hhhHH-HHHHhhCC-CCCCcEEEEEcCCh---------HHHHhhcccCCCCceeCCCCChhhHHH
Q 048833 30 KRYLLVMDDVWNED-PEAWC-KLKSLLLG-GANGSKILVTTRSR---------KVASIMGTRGGTTGFNLQGLPFEDCLS 97 (629)
Q Consensus 30 k~~LivlDdv~~~~-~~~~~-~~~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~~~~l~~L~~~~a~~ 97 (629)
+.-+||+||+.... ...|. .+...+.. ..+|..||+||+.. ++..++.. ...+++++++.++-.+
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~---~~~~~l~~~~~e~~~~ 169 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQ---CIRIGLPVLDDVARAA 169 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhc---CceEEecCCCHHHHHH
Confidence 34589999995321 12332 22222221 13466799999853 22223322 2689999999999999
Q ss_pred HHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHH
Q 048833 98 LFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 98 Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
++.+.+...+...+ ++...-+++.+.|-.-++
T Consensus 170 iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 170 VLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 99987754433332 244567777787655444
No 100
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.13 E-value=6.7 Score=39.78 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=67.2
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|++..-....+..+...+......+.+|++|.+.+ +....... ...+++++++.++..+.+...+-..+
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr--~~~~~~~~~~~~~l~~~l~~~~~~~g 193 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSR--CQRFDFKRIPLEDIVERLKKILDKEG 193 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhh--eeEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4555888999966555567777777765556677777776554 33333332 25788999999998888877664333
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRTL 135 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~~ 135 (629)
...+ ...+..+++.++|-|..+...
T Consensus 194 ~~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 194 IKIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred CCCC---HHHHHHHHHHcCCChHHHHHH
Confidence 2222 245677888999988655443
No 101
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=87.89 E-value=1.7 Score=41.62 Aligned_cols=101 Identities=20% Similarity=0.189 Sum_probs=72.4
Q ss_pred EEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHH-HhhcccCCCCceeCCCCChhhHHHHHHHhhcccCCCC
Q 048833 32 YLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVA-SIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEERDK 110 (629)
Q Consensus 32 ~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~-~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~ 110 (629)
=.||||+++....+.|..+...+.+....+|-|+.|..-... .-..++ ...|..++|.+++..+-+...+-..+...
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR--C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~ 208 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR--CQKFRFKKLKDEDIVDRLEKIASKEGVDI 208 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh--HHHhcCCCcchHHHHHHHHHHHHHhCCCC
Confidence 457889998888999999999998877888877776654322 111111 25689999999999999999986665554
Q ss_pred ChhHHHHHHHHHHhcCC-CchHHHHHHh
Q 048833 111 HPNLVKIGVEIVKKCGG-IPLAVRTLGS 137 (629)
Q Consensus 111 ~~~~~~~~~~i~~~c~g-lPLal~~~g~ 137 (629)
++ ...+.|++.++| |--|+.++-+
T Consensus 209 d~---~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 209 DD---DALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred CH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 43 345688999988 4555554443
No 102
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=87.81 E-value=5.7 Score=43.76 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=70.1
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
++.-++|||+++.-....|..+...+.......++|+||++.+ |.....++ ...|.++.++.++..+.+.+..-..+
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR--Cq~f~Fk~Ls~eeIv~~L~~Il~~Eg 195 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR--CLQFNLKQMPAGHIVSHLERILGEER 195 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh--eEEEecCCcCHHHHHHHHHHHHHHcC
Confidence 4555788999988777788888887776667888888888764 32222221 36799999999999999888764433
Q ss_pred CCCChhHHHHHHHHHHhcCCCc-hHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIP-LAVRT 134 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glP-Lal~~ 134 (629)
.... .+....|++.++|-. -|+..
T Consensus 196 I~id---~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 196 IAFE---PQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3222 244567888998854 45444
No 103
>COG3903 Predicted ATPase [General function prediction only]
Probab=87.65 E-value=0.41 Score=47.79 Aligned_cols=207 Identities=20% Similarity=0.205 Sum_probs=126.5
Q ss_pred HHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhhcccCCCCceeCCCCChh-hH
Q 048833 17 DQLQKVLRYSLKGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVASIMGTRGGTTGFNLQGLPFE-DC 95 (629)
Q Consensus 17 ~~~~~~l~~~L~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~~~~l~~L~~~-~a 95 (629)
+.....+..+...+|.++|+||..+- .++-..+...+..+...=+|+.|+|+.-.. .++..+.++.|..- ++
T Consensus 75 ~~~~~~~~~~~~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~------~ge~~~~~~~L~~~d~a 147 (414)
T COG3903 75 DSAVDTLVRRIGDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV------AGEVHRRVPSLSLFDEA 147 (414)
T ss_pred hHHHHHHHHHHhhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc------cccccccCCccccCCch
Confidence 44556788888999999999998432 223333444555555666788888876432 22367888888766 79
Q ss_pred HHHHHHhhcccCC--CCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCCCCHHHHHHHhhhhcccc------ccccCCcc
Q 048833 96 LSLFMKCAFKEER--DKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDSTDEHFWEYVRDNEIWQL------EQKESGIL 167 (629)
Q Consensus 96 ~~Lf~~~a~~~~~--~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~~~~~w~~~~~~~~~~~------~~~~~~~~ 167 (629)
.++|...+.-... .....-.....+|.++.+|.|++|...++..+.-...+.-..+.+....-. .-......
T Consensus 148 ~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~ 227 (414)
T COG3903 148 IELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLR 227 (414)
T ss_pred hHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhcc
Confidence 9999877643211 111233456788999999999999998888876543333333322211110 11234556
Q ss_pred hhhhcccccCChhhhhhhhhhccCCCCceeChHhHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCCcee
Q 048833 168 PALRLSYDQLPPRLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQ 239 (629)
Q Consensus 168 ~~l~~sy~~L~~~~k~~fl~~~~fp~~~~~~~~~l~~~wi~eg~i~~~~~~~~~~~~~~~~l~~L~~r~ll~ 239 (629)
..+.+||.-|..-.+.-|--++.|...+... ...|.+.|-... ...-....-+-.+++.+++.
T Consensus 228 asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~ 290 (414)
T COG3903 228 ASLDWSYALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVV 290 (414)
T ss_pred chhhhhhHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchh
Confidence 6789999999888888888888887665544 334444442210 01122344455556666554
No 104
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=87.65 E-value=4 Score=41.09 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=63.0
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+.+-+||+||+..-.......+...+......+++|+||... .+......+ ...+++.+++.++..+.+...+-..+
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr--~~~v~~~~~~~~~~~~~l~~~~~~~~ 201 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSR--CLPLFFRAPTDDELVDVLESIAEAEG 201 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCC--ceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 334589999996554444555666665545567888887543 222223322 25788999999998888887664433
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVR 133 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~ 133 (629)
.... .+....+++.++|-+-.+.
T Consensus 202 ~~~~---~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 202 VDYD---DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHH
Confidence 3322 2456678888888655543
No 105
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.63 E-value=3.6 Score=43.71 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=68.9
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|+++......+..+...+........+|++|... .+......+ ...|++.+++.++..+.+.+.+-..+
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR--c~~~~f~~ls~~el~~~L~~i~~~eg 192 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR--TQHFRFRRLTEEEIAGKLRRLLEAEG 192 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc--eEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 566689999998777777888888877655566666666543 332223222 36799999999999999988775444
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
.... ......|++.++|.+--+
T Consensus 193 i~i~---~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 193 REAE---PEALQLVARLADGAMRDA 214 (504)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHH
Confidence 3322 245678889999987544
No 106
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.24 E-value=0.14 Score=45.73 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=17.4
Q ss_pred CCCcCeeecccCccCccCC-cCCCCCCCcCeEeeeCCC
Q 048833 562 LEALETLVIARCPKLSSLP-EGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 562 l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~ 598 (629)
.++|+.|+|++|+.+++-. ..+..+++|+.|.+.+.|
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 3455555555555554421 223344555555555544
No 107
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=87.03 E-value=4.9 Score=40.06 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=66.5
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
++|+. |+|+++.........+...+..-..++.+|+||.+.+ +.....++ ...+.+.+++.+++.+.+.... ..
T Consensus 106 ~~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR--c~~~~~~~~~~~~~~~~L~~~~-~~- 180 (328)
T PRK05707 106 GRKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR--CQQQACPLPSNEESLQWLQQAL-PE- 180 (328)
T ss_pred CCeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh--ceeeeCCCcCHHHHHHHHHHhc-cc-
Confidence 34554 6799988888888888888776566788888887764 33333322 3779999999999998887653 11
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRTL 135 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~~ 135 (629)
. . .+-+..++..++|-|.....+
T Consensus 181 ~--~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 S--D---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred C--C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 1 123456788999999755444
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.83 E-value=4.4 Score=43.77 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=71.6
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.+++-+||+|++..-....+..+...+........+|++|.+ ..+......+ ...|+++.++.++..+.+...+...
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SR--cq~i~F~pLs~~eL~~~L~~il~~e 194 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSR--CQHFTFTRLSEAGLEAHLTKVLGRE 194 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhh--hhccccCCCCHHHHHHHHHHHHHHc
Confidence 356678999999776667778888777654455667776665 3444333322 3678999999999998888766543
Q ss_pred CCCCChhHHHHHHHHHHhcCCC-chHHHHHHhhh
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGI-PLAVRTLGSLL 139 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~gl-PLal~~~g~~L 139 (629)
+.... ...+..+++.++|- -.|+..+...+
T Consensus 195 gi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 195 GVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33222 24566788888884 56777766544
No 109
>PLN03025 replication factor C subunit; Provisional
Probab=86.53 E-value=6.6 Score=39.16 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=64.4
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
++.-++|+|+++.........+...+......+++|++|... .+.....++ ...++++++++++..+.+...+-..+
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR--c~~i~f~~l~~~~l~~~L~~i~~~eg 175 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR--CAIVRFSRLSDQEILGRLMKVVEAEK 175 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh--hhcccCCCCCHHHHHHHHHHHHHHcC
Confidence 456789999997765555556665555445667888877553 222222222 26799999999999988887775443
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
....+ +....+++.++|-...+
T Consensus 176 i~i~~---~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 176 VPYVP---EGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCCH---HHHHHHHHHcCCCHHHH
Confidence 33322 34678888898865433
No 110
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.46 E-value=7.9 Score=39.96 Aligned_cols=99 Identities=16% Similarity=0.192 Sum_probs=65.5
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|++..-...+++.+...+......+.+|++|.. ..+......+ ...+++++++.++..+.+...+-..+
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR--~~~v~f~~l~~~ei~~~l~~~~~~~g 203 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR--CQRFNFKRIPLEEIQQQLQGICEAEG 203 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHH--HHHhhcCCCCHHHHHHHHHHHHHHcC
Confidence 45668899999776667888888888765667777766643 4444333322 25789999999988877766553222
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
.... .+.+..+++.++|-+--+
T Consensus 204 ~~i~---~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 204 ISVD---ADALQLIGRKAQGSMRDA 225 (397)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHH
Confidence 2222 245678889999966533
No 111
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.33 E-value=12 Score=40.84 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=69.0
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.+++-++|+|+|..-....+..+...+.....+.++|++|.+.+ +....-+ ....+++++++.++..+.+.+.+-..
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS--RCLQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHH--hhheeeccCCCHHHHHHHHHHHHHHc
Confidence 35666889999987666778888887776556778888887753 2222222 23789999999999998888776443
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchHHH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLAVR 133 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLal~ 133 (629)
+.... ......|++.++|-+..+.
T Consensus 194 gI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 194 QIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 33322 2345678888988665443
No 112
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=85.73 E-value=10 Score=41.46 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=65.2
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|++..........+...+.......++|++|.+.+ +.....+ ....|+++.++.++..+.+.+.+-..+
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS--RC~~f~f~~Ls~eeI~~~L~~Il~kEg 195 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS--RCLQFVLRNMTAQQVADHLAHVLDSEK 195 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH--HHhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 5666899999977666667777777765445677887776643 2222211 125688899999999888877664433
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
.... ......|++.++|-+.-+
T Consensus 196 i~id---~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 196 IAYE---PPALQLLGRAAAGSMRDA 217 (709)
T ss_pred CCcC---HHHHHHHHHHhCCCHHHH
Confidence 3222 234568888998877544
No 113
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.61 E-value=0.047 Score=49.53 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=24.7
Q ss_pred cccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCC
Q 048833 337 FLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAG 392 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 392 (629)
.|..|+++.+.+..+|..++.+..++.+++..| .....|.+++++++++.+++.+
T Consensus 66 ~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 66 RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred HHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhhcc
Confidence 344444444444444444444444444444332 3444444444444444444444
No 114
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.41 E-value=0.19 Score=44.82 Aligned_cols=64 Identities=19% Similarity=0.387 Sum_probs=44.8
Q ss_pred CccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCC-cCC-CCCCCcCeEeeeCCCccccc
Q 048833 540 TLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLP-EGM-HHVTTLKLLTIGGCPALSER 603 (629)
Q Consensus 540 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~~-~~l~~L~~L~l~~c~~l~~~ 603 (629)
.++.++-+++....+--..+.++++++.|.+.+|..+.... ..+ +..++|+.|++++||.+++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 35566656554444434456788899999999998877532 111 24689999999999998863
No 115
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.44 E-value=10 Score=40.58 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=68.2
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.+++-++|+|++.......++.+...+.......++|++|.+. .+.....++ ...+++++++.++..+.+.+.+-..
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SR--c~~~~f~~Ls~~eI~~~L~~il~~e 194 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSR--CIQLHLKHISQADIKDQLKIILAKE 194 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHh--eeeEEeCCCCHHHHHHHHHHHHHHc
Confidence 3566799999998777778888888887655667777655554 344333322 3789999999999887777654332
Q ss_pred CCCCChhHHHHHHHHHHhcCCCc-hHHHHHH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIP-LAVRTLG 136 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glP-Lal~~~g 136 (629)
+.... ......+++.++|-+ -|+..+-
T Consensus 195 gi~~e---~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 195 NINSD---EQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 32222 234467888899855 3444443
No 116
>PRK06620 hypothetical protein; Validated
Probab=84.28 E-value=12 Score=34.79 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=54.6
Q ss_pred eEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-------HHHhhcccCCCCceeCCCCChhhHHHHHHHhh
Q 048833 31 RYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-------VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCA 103 (629)
Q Consensus 31 ~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-------v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 103 (629)
.-++++||+..-+....-.+...+. ..|..||+|++... +..++.. .-+++++++++++-.++..+.+
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~---gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKS---VLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhC---CceEeeCCCCHHHHHHHHHHHH
Confidence 3578889995322212222222222 35678999987532 2333322 2579999999999888887776
Q ss_pred cccCCCCChhHHHHHHHHHHhcCCCchHH
Q 048833 104 FKEERDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 104 ~~~~~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
...+...+ +++..-+++++.|---++
T Consensus 161 ~~~~l~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 161 SISSVTIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHcCCCCC---HHHHHHHHHHccCCHHHH
Confidence 43332222 345567777777654433
No 117
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.25 E-value=0.59 Score=26.56 Aligned_cols=18 Identities=22% Similarity=0.685 Sum_probs=13.1
Q ss_pred CCCcCeEeeeCCCccccc
Q 048833 586 VTTLKLLTIGGCPALSER 603 (629)
Q Consensus 586 l~~L~~L~l~~c~~l~~~ 603 (629)
+++|+.|++++|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 367888888888877654
No 118
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.02 E-value=0.045 Score=57.24 Aligned_cols=165 Identities=24% Similarity=0.246 Sum_probs=81.8
Q ss_pred hhhccCCCCceEEEEecCCCCccchHHHHHhhhcC-ccccEEEcCCCCcc-----ccccccCCCCccceeecccCCCcc-
Q 048833 301 SSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKS-QFLRVLNLSESSIE-----VCSRKMGNLKHMRYLDLSRNSKIK- 373 (629)
Q Consensus 301 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~- 373 (629)
...+.....|..|++++|..+......+...+... ..|++|.+..|.+. .+...+....+++.++++.|....
T Consensus 108 ~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~ 187 (478)
T KOG4308|consen 108 AQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIEL 187 (478)
T ss_pred HHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchh
Confidence 34555566666677777666644444444444443 45666666666554 223334445666677766664321
Q ss_pred ---ccchhhc----cCCCccEeccCCcccccc----CCccccccCc-ccEEEecCcccccC-----cccCCCC-CCCCeE
Q 048833 374 ---KLPKSIC----ELQSLETLDLAGCLELEE----LPKDIKYLVN-LRVLVLTTKQKSLQ-----ESGIRSL-GSLRSL 435 (629)
Q Consensus 374 ---~lp~~~~----~l~~L~~L~l~~~~~~~~----lp~~i~~l~~-L~~L~l~~~~~~~~-----~~~~~~l-~~L~~L 435 (629)
.++..+. ...++++|++++|..... +-..+...++ +..|++..|.+... .+.+..+ ..++.+
T Consensus 188 g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l 267 (478)
T KOG4308|consen 188 GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVL 267 (478)
T ss_pred hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhh
Confidence 1222222 355666666666532211 1112233333 44455555544321 1233333 455666
Q ss_pred eecCCCCcc----hhhhhCCCCCccceEecccCC
Q 048833 436 KIFGCRDLE----HLFEEIDQLSVLRTLSIESCP 465 (629)
Q Consensus 436 ~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~ 465 (629)
+++.|+... .+...+..+++++.|.+..|.
T Consensus 268 ~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 268 DLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 666665432 334445555566666665544
No 119
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.84 E-value=8.6 Score=40.19 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=67.5
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.++.-++|+|+++.-..+.++.+...+.........|++|.+ ..+.....++ ...|.+++++.++..+.+.+.+-..
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR--Cq~~~f~~ls~~~i~~~L~~i~~~E 196 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR--CQDFIFKKVPLSVLQDYSEKLCKIE 196 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh--hheeeecCCCHHHHHHHHHHHHHHc
Confidence 456678999999877777888887777654455665655554 3343333332 3679999999999888887776443
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchHH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
+.... ......|++.++|-+.-.
T Consensus 197 gi~~e---~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 197 NVQYD---QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred CCCCC---HHHHHHHHHHcCChHHHH
Confidence 33222 245678999999987543
No 120
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.30 E-value=14 Score=40.32 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=63.1
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|+++......++.+...+..-...+.+|++|.+ ..+......+ ...+++++++.++....+...+-..+
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SR--c~~vef~~l~~~ei~~~L~~i~~~eg 203 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR--CQRFNFKRIPLDEIQSQLQMICRAEG 203 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh--ceEEecCCCCHHHHHHHHHHHHHHcC
Confidence 44557899999776667778888887765556666655543 4444333332 37899999999988777766553322
Q ss_pred CCCChhHHHHHHHHHHhcCCCch
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPL 130 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPL 130 (629)
.... ...+..+++.++|-.-
T Consensus 204 i~I~---~eal~~La~~s~Gdlr 223 (620)
T PRK14954 204 IQID---ADALQLIARKAQGSMR 223 (620)
T ss_pred CCCC---HHHHHHHHHHhCCCHH
Confidence 2222 2345678889998443
No 121
>PRK04132 replication factor C small subunit; Provisional
Probab=83.23 E-value=14 Score=41.64 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcC-----C-ceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCC
Q 048833 16 LDQLQKVLRYSLK-----G-KRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQ 88 (629)
Q Consensus 16 ~~~~~~~l~~~L~-----~-k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~ 88 (629)
.+.+.+.+++..+ + +.-++|+|+++....++...+...+.......++|++|.+.+ +.....++ ...++++
T Consensus 610 id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSR--C~~i~F~ 687 (846)
T PRK04132 610 INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR--CAIFRFR 687 (846)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhh--ceEEeCC
Confidence 4555555554332 2 457999999988777788888887776566778888777653 33333322 4789999
Q ss_pred CCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHH
Q 048833 89 GLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRT 134 (629)
Q Consensus 89 ~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 134 (629)
+++.++-.+.+.+.+-..+...+ .+....+++.|+|-+.....
T Consensus 688 ~ls~~~i~~~L~~I~~~Egi~i~---~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 688 PLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 99999998888776643332222 24567899999997755433
No 122
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=83.20 E-value=7.8 Score=39.73 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=65.1
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|+++.........+...+.....+..+|++|.+.+ +.....++ ...+.+++++.++..+.+.... +
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSR--c~~i~f~~~~~~~i~~~L~~~~---~ 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSR--CRHVALRTPSVEAVAEVLVRRD---G 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhh--CeEEECCCCCHHHHHHHHHHhc---C
Confidence 4455788899987776677777777766566777777777753 33333322 3789999999999988886432 1
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRT 134 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~ 134 (629)
.. .+.+..++..++|-|.....
T Consensus 191 --~~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 191 --VD---PETARRAARASQGHIGRARR 212 (394)
T ss_pred --CC---HHHHHHHHHHcCCCHHHHHH
Confidence 11 23466789999999865433
No 123
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=83.13 E-value=23 Score=37.83 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=75.1
Q ss_pred HHHHHHHHHHH----cCCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCC
Q 048833 16 LDQLQKVLRYS----LKGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGL 90 (629)
Q Consensus 16 ~~~~~~~l~~~----L~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L 90 (629)
.+.+.+.+.+. ..+++-++|+|++.....+....+...+......+++|++|.+.. +.....++ ...+++.++
T Consensus 99 Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR--c~~~~F~~L 176 (535)
T PRK08451 99 IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR--TQHFRFKQI 176 (535)
T ss_pred HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh--ceeEEcCCC
Confidence 45555554431 124566889999987777778888877776566788888777642 22222222 368999999
Q ss_pred ChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHH
Q 048833 91 PFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTL 135 (629)
Q Consensus 91 ~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 135 (629)
+.++..+.+...+-..+.... ...+..+++.++|-+.-+..+
T Consensus 177 s~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 177 PQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 999988887766543333222 245668888999987554443
No 124
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.78 E-value=20 Score=37.92 Aligned_cols=98 Identities=20% Similarity=0.232 Sum_probs=68.5
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++=++|+|++..-..+.++.+...+..-.+..++|++|.+ +.+.....++ ...+++++++.++..+.+...+-..+
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SR--c~~~~f~~l~~~el~~~L~~ia~~Eg 192 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR--CQRFDLQKIPTDKLVEHLVDIAKKEN 192 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHh--heeeecccccHHHHHHHHHHHHHHcC
Confidence 55667999999776667788888888766667777776654 4454444332 37799999999999988888775444
Q ss_pred CCCChhHHHHHHHHHHhcCCCchH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLA 131 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLa 131 (629)
....+ .....|++.++|-+..
T Consensus 193 i~i~~---eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 193 IEHDE---ESLKLIAENSSGSMRN 213 (491)
T ss_pred CCCCH---HHHHHHHHHcCCCHHH
Confidence 33222 3456788889887653
No 125
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.76 E-value=11 Score=42.40 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=71.1
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
++++-++|||++.......++.+...+-......++|++|.+.+ +.....++ ...|++++++.++..+.+.+.+-..
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSR--Cq~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR--CLQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHh--heEEeCCCCCHHHHHHHHHHHHHHc
Confidence 46777999999988777888888887776556777777776644 33222221 3789999999999998887765332
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchHHHHH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLAVRTL 135 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLal~~~ 135 (629)
+... -......|++.++|.|..+..+
T Consensus 195 gI~~---edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 195 QLPF---EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2221 1245678899999987644433
No 126
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=82.73 E-value=5.1 Score=37.36 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=56.6
Q ss_pred HHHHcCCceEEEEEecCCCCC-hhhHH-HHHHhhCC-CCCCcEEEEEcCCh---------HHHHhhcccCCCCceeCCCC
Q 048833 23 LRYSLKGKRYLLVMDDVWNED-PEAWC-KLKSLLLG-GANGSKILVTTRSR---------KVASIMGTRGGTTGFNLQGL 90 (629)
Q Consensus 23 l~~~L~~k~~LivlDdv~~~~-~~~~~-~~~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~~~~l~~L 90 (629)
++..+++ -=++++|||+.-. ...|. .+...+.. ...|.+||+|++.. ++..++.. ..+++++++
T Consensus 91 ~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~---Gl~~~l~~p 166 (219)
T PF00308_consen 91 FKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW---GLVVELQPP 166 (219)
T ss_dssp HHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC---SEEEEE---
T ss_pred hhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh---cchhhcCCC
Confidence 4445553 3467889996522 22232 22222221 13577899998553 33344433 267999999
Q ss_pred ChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHH
Q 048833 91 PFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVR 133 (629)
Q Consensus 91 ~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 133 (629)
+.++-.+++.+.+-..+...+ ++++.-+++.+.+-.-.+.
T Consensus 167 d~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 167 DDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp -HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHH
Confidence 999999999998865544433 2455667777766555444
No 127
>PRK08084 DNA replication initiation factor; Provisional
Probab=81.99 E-value=12 Score=35.43 Aligned_cols=99 Identities=18% Similarity=0.128 Sum_probs=59.2
Q ss_pred EEEEEecCCCCC-hhhHHH-HHHhhCC-CCCC-cEEEEEcCCh---------HHHHhhcccCCCCceeCCCCChhhHHHH
Q 048833 32 YLLVMDDVWNED-PEAWCK-LKSLLLG-GANG-SKILVTTRSR---------KVASIMGTRGGTTGFNLQGLPFEDCLSL 98 (629)
Q Consensus 32 ~LivlDdv~~~~-~~~~~~-~~~~~~~-~~~g-s~iivTTR~~---------~v~~~~~~~~~~~~~~l~~L~~~~a~~L 98 (629)
-++++||+.... ...|.. +...+.. ...| .++|+||+.. ++..++.. ..+++++++++++-.++
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~---g~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDW---GQIYKLQPLSDEEKLQA 175 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhC---CceeeecCCCHHHHHHH
Confidence 378999995421 134432 2222221 1133 4799999754 33444433 26899999999999999
Q ss_pred HHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHH
Q 048833 99 FMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLG 136 (629)
Q Consensus 99 f~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g 136 (629)
+.+++...+...+ +++..-+++.+.|-.-++..+-
T Consensus 176 l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 176 LQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHH
Confidence 8886744333322 3456678888887665554433
No 128
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.97 E-value=22 Score=38.99 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=67.2
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEc-CChHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTT-RSRKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTT-R~~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++=++|+|++..-....++.+...+..-...+.+|++| +...+......+ ..++++++++.++..+.+...+-..+
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SR--c~iv~f~~ls~~ei~~~L~~ia~~eg 197 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSR--CQIFDFNRIQVADIVNHLQYVASKEG 197 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhh--hheeecCCCCHHHHHHHHHHHHHHcC
Confidence 445578999998777778888888887655677766655 444444443332 37899999999999888877664433
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
....+ ..+..+++.++|-.--+
T Consensus 198 i~i~~---~al~~La~~s~gdlr~a 219 (614)
T PRK14971 198 ITAEP---EALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCCH---HHHHHHHHHcCCCHHHH
Confidence 33222 34567888898855433
No 129
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=81.53 E-value=6.1 Score=37.08 Aligned_cols=104 Identities=18% Similarity=0.095 Sum_probs=59.4
Q ss_pred eEEEEEecCCCCChhhHHHHHHhhCCC-CCCc-EEEEEcCChHHHH--------hhcccCCCCceeCCCCChhhHHHHHH
Q 048833 31 RYLLVMDDVWNEDPEAWCKLKSLLLGG-ANGS-KILVTTRSRKVAS--------IMGTRGGTTGFNLQGLPFEDCLSLFM 100 (629)
Q Consensus 31 ~~LivlDdv~~~~~~~~~~~~~~~~~~-~~gs-~iivTTR~~~v~~--------~~~~~~~~~~~~l~~L~~~~a~~Lf~ 100 (629)
.-+||+||+..-+...-..+...+... ..|. .||+|++...... .+.. ...++++++++++-..++.
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~---~~~i~l~pl~~~~~~~~l~ 167 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGW---GLVYELKPLSDADKIAALK 167 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhc---CeEEEecCCCHHHHHHHHH
Confidence 347889999543322223343434321 2344 4667766533221 2211 2678999999988777766
Q ss_pred HhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhc
Q 048833 101 KCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLY 140 (629)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~ 140 (629)
+.+-..+.... ++....+++.+.|.+..+..+-..+.
T Consensus 168 ~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 168 AAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 54422233222 24566777889999988877666553
No 130
>PRK05642 DNA replication initiation factor; Validated
Probab=80.92 E-value=11 Score=35.70 Aligned_cols=101 Identities=21% Similarity=0.209 Sum_probs=60.3
Q ss_pred EEEEecCCCC-ChhhHHH-HHHhhCC-CCCCcEEEEEcCChH---------HHHhhcccCCCCceeCCCCChhhHHHHHH
Q 048833 33 LLVMDDVWNE-DPEAWCK-LKSLLLG-GANGSKILVTTRSRK---------VASIMGTRGGTTGFNLQGLPFEDCLSLFM 100 (629)
Q Consensus 33 LivlDdv~~~-~~~~~~~-~~~~~~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~ 100 (629)
++|+||+... ....|.. +...+.. ..+|.+||+||+... +..++.. ..++++++++.++-.++..
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~---gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTL---ALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhc---CeeeecCCCCHHHHHHHHH
Confidence 5788999532 1234432 3343322 235678999887532 1222221 2578999999999999998
Q ss_pred HhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 048833 101 KCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLL 139 (629)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L 139 (629)
.++...+...+ +++..-+++++.|-.-++..+-..|
T Consensus 177 ~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRGLHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 76654333322 3566678888888765554444333
No 131
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.41 E-value=0.085 Score=47.97 Aligned_cols=86 Identities=22% Similarity=0.198 Sum_probs=61.5
Q ss_pred hhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccE
Q 048833 332 ISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRV 411 (629)
Q Consensus 332 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 411 (629)
+..++...+||++.+.+..+-..++.+..|..|+++.| .+..+|..++.+..+..+++..| .....|.+++.++.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 34456677778877777666666777777777777765 56777777777777777777664 56677777777777777
Q ss_pred EEecCccc
Q 048833 412 LVLTTKQK 419 (629)
Q Consensus 412 L~l~~~~~ 419 (629)
++...+.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 77766653
No 132
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=80.35 E-value=5.3 Score=40.04 Aligned_cols=103 Identities=23% Similarity=0.232 Sum_probs=58.1
Q ss_pred HcCCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEE--EcCChHHHHhhcccCCCCceeCCCCChhhHHHHHHHhh
Q 048833 26 SLKGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILV--TTRSRKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCA 103 (629)
Q Consensus 26 ~L~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iiv--TTR~~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 103 (629)
+..+++.+|++|.|..-+..+=+.+.... .+|.-|+| ||-+....-.-.-.....+|++++|+.++-.++..+-+
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 34589999999999763332323333333 56776666 45444321110111123799999999999999998833
Q ss_pred cccCCCCC---hhH-HHHHHHHHHhcCCCchH
Q 048833 104 FKEERDKH---PNL-VKIGVEIVKKCGGIPLA 131 (629)
Q Consensus 104 ~~~~~~~~---~~~-~~~~~~i~~~c~glPLa 131 (629)
........ ..+ ++.-..+++.+.|--.+
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 22111110 011 23445677788885443
No 133
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=80.11 E-value=13 Score=36.84 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=62.4
Q ss_pred ceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccCC
Q 048833 30 KRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEER 108 (629)
Q Consensus 30 k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 108 (629)
.+-+|++|++..-.......+...+......+++|+++... .+......+ ...+++++++.++........+-..+.
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr--~~~~~~~~l~~~ei~~~l~~~~~~~~~ 179 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR--CAVFRFSPLKKEAVAERLRYIAENEGI 179 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH--hheeeeCCCCHHHHHHHHHHHHHHcCC
Confidence 45689999996554445566666666555667788777442 222222221 256899999999988888777654433
Q ss_pred CCChhHHHHHHHHHHhcCCCchHH
Q 048833 109 DKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 109 ~~~~~~~~~~~~i~~~c~glPLal 132 (629)
...+ .....+++.++|-+.-+
T Consensus 180 ~i~~---~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 180 EITD---DALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCCH---HHHHHHHHHcCCCHHHH
Confidence 3222 34567788898876553
No 134
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=79.99 E-value=14 Score=40.39 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=69.3
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.+++-++|+|+++......++.+...+-......++|++|.+.+ +.....++ ...|.+++++.++..+.+.+..-..
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR--C~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR--CLQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh--heEeeCCCCCHHHHHHHHHHHHHHc
Confidence 46677899999988777788888887776556677777776644 33222222 3789999999999998887765322
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchHHHH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLAVRT 134 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLal~~ 134 (629)
+.... ......|++.++|.+.....
T Consensus 195 ~i~~e---~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 195 QIPFE---PRALQLLARAADGSMRDALS 219 (647)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 22211 23446788999997764433
No 135
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=78.05 E-value=17 Score=36.03 Aligned_cols=97 Identities=16% Similarity=0.094 Sum_probs=65.8
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++=++|+|++..........+...+..-. .+.+|++|.+. .+.....++ ...+++.+++.++..+.+........
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SR--cq~i~f~~l~~~~~~~~L~~~~~~~~ 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSR--CQIIPFYRLSDEQLEQVLKRLGDEEI 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhh--ceEEecCCCCHHHHHHHHHHhhcccc
Confidence 566788999998777778888887776544 45666665544 444444443 47899999999999999887652111
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRT 134 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~ 134 (629)
. + .....++..++|-|.....
T Consensus 200 ~----~--~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 200 L----N--INFPELLALAQGSPGAAIA 220 (314)
T ss_pred c----h--hHHHHHHHHcCCCHHHHHH
Confidence 0 1 1124778899999976544
No 136
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=77.83 E-value=24 Score=39.48 Aligned_cols=94 Identities=23% Similarity=0.283 Sum_probs=57.2
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEE--cCCh--HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhc
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVT--TRSR--KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAF 104 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivT--TR~~--~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~ 104 (629)
+++.++|||||+.-....++.+...+. .|+.++++ |.+. .+.....++ ...+++++++.++..+++.+.+-
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR--~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSR--SRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcc--ccceecCCCCHHHHHHHHHHHHH
Confidence 467899999997655556666655443 45655553 3332 122222222 36799999999999999887653
Q ss_pred c------c-CCCCChhHHHHHHHHHHhcCCCch
Q 048833 105 K------E-ERDKHPNLVKIGVEIVKKCGGIPL 130 (629)
Q Consensus 105 ~------~-~~~~~~~~~~~~~~i~~~c~glPL 130 (629)
. . ....+ ++....+++.+.|.-.
T Consensus 183 ~~~~~~g~~~v~I~---deaL~~La~~s~GD~R 212 (725)
T PRK13341 183 DKERGYGDRKVDLE---PEAEKHLVDVANGDAR 212 (725)
T ss_pred HHHhhcCCcccCCC---HHHHHHHHHhCCCCHH
Confidence 1 1 11111 2345677888887543
No 137
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.77 E-value=25 Score=38.44 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=68.0
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|++..-..+..+.+...+......+.+|++|.+. .+....... ...++++.++.++..+.+.+.+...+
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR--~~~i~f~~l~~~el~~~L~~~a~~eg 196 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR--CQRFDFHRHSVADMAAHLRKIAAAEG 196 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhc--cceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 456689999997666667777777776655667777766553 344333332 36788999999998888887765433
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRT 134 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~ 134 (629)
.... ...+..+++.++|-+..+..
T Consensus 197 l~i~---~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 197 INLE---PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 3222 24567888999998765443
No 138
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=77.29 E-value=33 Score=38.99 Aligned_cols=99 Identities=15% Similarity=0.232 Sum_probs=67.5
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.+++=++|||+++......++.+...+..-...+.+|++|.+. .+.....++ ...|++..++.++..+.+.+..-..
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSR--c~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR--THHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh--eeEEEeeCCCHHHHHHHHHHHHHHc
Confidence 3555578899998878888888888888766777777766544 344444332 3789999999999888777655332
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLA 131 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLa 131 (629)
+....+ .....+++.++|-+..
T Consensus 196 Gv~id~---eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 196 GVPVEP---GVLPLVIRAGGGSVRD 217 (824)
T ss_pred CCCCCH---HHHHHHHHHcCCCHHH
Confidence 322222 3345788889997643
No 139
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.80 E-value=17 Score=37.09 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=61.6
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|++.......+..+...+........+|++|.. +.+......+ ...+++++++.++....+...+...+
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr--~~~v~~~~~~~~~l~~~l~~~~~~~g 184 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR--CQIFDFKRITIKDIKEHLAGIAVKEG 184 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc--ceeEecCCccHHHHHHHHHHHHHHcC
Confidence 45557999999665555677776666554445666666543 3333222222 25799999999998888887775444
Q ss_pred CCCChhHHHHHHHHHHhcCCCch
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPL 130 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPL 130 (629)
.... .+.+..+++.++|-+-
T Consensus 185 ~~i~---~~al~~l~~~~~gdlr 204 (367)
T PRK14970 185 IKFE---DDALHIIAQKADGALR 204 (367)
T ss_pred CCCC---HHHHHHHHHhCCCCHH
Confidence 3322 2456677888888554
No 140
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=76.63 E-value=32 Score=36.17 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=64.2
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|++.....+..+.+...+........+|++|.. +.+......+ ...+++++++.++..+.+...+-..+
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sR--c~~v~f~~l~~~el~~~L~~~~~~eg 197 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSR--CQKMHLKRIPEETIIDKLALIAKQEG 197 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHh--ceEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 56678899999665555666777777665556677776644 3333333322 36799999999998887776653323
Q ss_pred CCCChhHHHHHHHHHHhcCCCch-HHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPL-AVRT 134 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPL-al~~ 134 (629)
...+ ...+..+++.++|-+. |+..
T Consensus 198 ~~i~---~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 198 IETS---REALLPIARAAQGSLRDAESL 222 (451)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2222 2356678888988553 4433
No 141
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=76.62 E-value=30 Score=38.40 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=65.8
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|++.......+..+...+........+|++|.+ ..+......+ ...+++.+++.++..+.+...+-..+
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR--cq~ieF~~L~~eeI~~~L~~il~keg 194 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR--VQRFNFRRISEDEIVSRLEFILEKEN 194 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh--ceeEEccCCCHHHHHHHHHHHHHHcC
Confidence 56668899999776667788888777654455665555544 4444333332 36899999999998888877553333
Q ss_pred CCCChhHHHHHHHHHHhcCCCch-HHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPL-AVRTL 135 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPL-al~~~ 135 (629)
.... ...+..+++.++|-+. |+..+
T Consensus 195 I~id---~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 195 ISYE---KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2222 2346678889988654 44433
No 142
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=76.41 E-value=1.7 Score=24.53 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=8.2
Q ss_pred cccEEEcCCCCcccccc
Q 048833 337 FLRVLNLSESSIEVCSR 353 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~ 353 (629)
+|+.|+|++|.++.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 34455555555544443
No 143
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=76.41 E-value=1.7 Score=24.53 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=8.2
Q ss_pred cccEEEcCCCCcccccc
Q 048833 337 FLRVLNLSESSIEVCSR 353 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~ 353 (629)
+|+.|+|++|.++.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 34455555555544443
No 144
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.40 E-value=22 Score=38.80 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=67.2
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
++.-++|||+|+......+..+...+..-....++|++|.+ ..+.....++ ...++++.++.++..+.+.+.+-..+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSR--c~~~~f~~Ls~eei~~~L~~i~~~eg 200 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSR--CLQFNLRPMAPETVLEHLTQVLAAEN 200 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHh--ceeeecCCCCHHHHHHHHHHHHHHcC
Confidence 44557899999887777888888777665556677766655 3444333332 37899999999998888887664433
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVR 133 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~ 133 (629)
.... ......+++.++|-+.-+.
T Consensus 201 i~ie---~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 201 VPAE---PQALRLLARAARGSMRDAL 223 (618)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHH
Confidence 3222 2345678888888665443
No 145
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=76.07 E-value=11 Score=38.39 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=56.5
Q ss_pred CceEEEEEecCCCC-----------Chh---hHHHHHHhhCC--CCCCcEEEEEcCChHHHHhhccc--CCCCceeCCCC
Q 048833 29 GKRYLLVMDDVWNE-----------DPE---AWCKLKSLLLG--GANGSKILVTTRSRKVASIMGTR--GGTTGFNLQGL 90 (629)
Q Consensus 29 ~k~~LivlDdv~~~-----------~~~---~~~~~~~~~~~--~~~gs~iivTTR~~~v~~~~~~~--~~~~~~~l~~L 90 (629)
..+.+|++|+++.- +.+ .+..+...+.+ ...+.+||.||...+.....-.. .-...++++..
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 45689999998542 111 12222222222 13467889998865433221111 11257899999
Q ss_pred ChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCc
Q 048833 91 PFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIP 129 (629)
Q Consensus 91 ~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 129 (629)
+.++..++|..++.+......-++ ..+++.+.|..
T Consensus 294 ~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 999999999988865433222233 45667777754
No 146
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.72 E-value=13 Score=39.10 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=65.0
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|+++.-.....+.+...+........+|++|.+ ..+......+ ...+++++++.++....+...+...+
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR--~~vv~f~~l~~~el~~~L~~i~~~eg 193 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR--CQVIEFRNISDELIIKRLQEVAEAEG 193 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC--cEEEEECCccHHHHHHHHHHHHHHcC
Confidence 56679999999654445566666666554444555545444 4444444433 36899999999998888877764433
Q ss_pred CCCChhHHHHHHHHHHhcCC-CchHHHHHHh
Q 048833 108 RDKHPNLVKIGVEIVKKCGG-IPLAVRTLGS 137 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~g-lPLal~~~g~ 137 (629)
....+ .....+++.++| ++.|+..+..
T Consensus 194 i~i~~---eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 194 IEIDR---EALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CCCCH---HHHHHHHHHhCCCHHHHHHHHHH
Confidence 32222 345567777754 5666666654
No 147
>PRK04195 replication factor C large subunit; Provisional
Probab=75.59 E-value=49 Score=35.20 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=62.8
Q ss_pred ceEEEEEecCCCCC----hhhHHHHHHhhCCCCCCcEEEEEcCChH-HHH-hhcccCCCCceeCCCCChhhHHHHHHHhh
Q 048833 30 KRYLLVMDDVWNED----PEAWCKLKSLLLGGANGSKILVTTRSRK-VAS-IMGTRGGTTGFNLQGLPFEDCLSLFMKCA 103 (629)
Q Consensus 30 k~~LivlDdv~~~~----~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~-~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 103 (629)
++-+||+|+++.-. ...+..+...+.. .+..||+|+.+.. +.. .... ....+++.+++.++....+...+
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrs--r~~~I~f~~~~~~~i~~~L~~i~ 173 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRN--ACLMIEFKRLSTRSIVPVLKRIC 173 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhc--cceEEEecCCCHHHHHHHHHHHH
Confidence 67899999996532 1335555555542 3455777775532 111 1111 23678999999999998888777
Q ss_pred cccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 048833 104 FKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLL 139 (629)
Q Consensus 104 ~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L 139 (629)
...+...++ .....|++.++|-..++...-..+
T Consensus 174 ~~egi~i~~---eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 174 RKEGIECDD---EALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred HHcCCCCCH---HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 544443332 456788899988665554433333
No 148
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=74.98 E-value=47 Score=36.02 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=67.1
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.+++-++|+|++..-....++.+...+........+|++|.+ ..+......+ ...++.++++.++..+.+...+...
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SR--c~~~~f~~l~~~el~~~L~~i~~~e 194 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSR--CQHFNFRLLSLEKIYNMLKKVCLED 194 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHh--ceEEEecCCCHHHHHHHHHHHHHHc
Confidence 456668899999777777788888777765566777776654 3343333332 3678999999999888887776444
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchHH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
+....+ ..+..+++.++|-+..+
T Consensus 195 gi~id~---eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 195 QIKYED---EALKWIAYKSTGSVRDA 217 (563)
T ss_pred CCCCCH---HHHHHHHHHcCCCHHHH
Confidence 333222 44566888888876544
No 149
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=74.30 E-value=29 Score=34.50 Aligned_cols=93 Identities=11% Similarity=0.026 Sum_probs=66.2
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++=.+|+|+++.........+...+-.-..+..+|++|.+.+ +.....++ ...+.+.+++.+++.+.+.....
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR--C~~~~~~~~~~~~~~~~L~~~~~--- 180 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR--CQTWLIHPPEEQQALDWLQAQSS--- 180 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh--ceEEeCCCCCHHHHHHHHHHHhc---
Confidence 5555777999988888888888888887777888888887753 33333322 36899999999999988876541
Q ss_pred CCCChhHHHHHHHHHHhcCCCchH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLA 131 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLa 131 (629)
. .. ..+...+..++|-|..
T Consensus 181 ~--~~---~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 181 A--EI---SEILTALRINYGRPLL 199 (325)
T ss_pred c--Ch---HHHHHHHHHcCCCHHH
Confidence 1 11 1245667889999963
No 150
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=73.63 E-value=17 Score=36.02 Aligned_cols=97 Identities=12% Similarity=0.140 Sum_probs=66.6
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++=++|+|+++......-..+...+..-..++.+|++|...+ +.....++ ...+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR--Cq~i~~~~~~~~~~~~~L~~~~---- 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR--CQRLEFKLPPAHEALAWLLAQG---- 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh--heEeeCCCcCHHHHHHHHHHcC----
Confidence 4556888999987777777778777776667887888877643 44333332 3678999999999887775431
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRTLG 136 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~~g 136 (629)
. + ...+..++..++|-|+....+.
T Consensus 186 ~--~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 V--S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C--C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1 1225677899999998654443
No 151
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=73.59 E-value=18 Score=37.98 Aligned_cols=112 Identities=11% Similarity=0.046 Sum_probs=65.1
Q ss_pred HHHHcCCceEEEEEecCCCCC-hhhH-HHHHHhhCC-CCCCcEEEEEcCCh---------HHHHhhcccCCCCceeCCCC
Q 048833 23 LRYSLKGKRYLLVMDDVWNED-PEAW-CKLKSLLLG-GANGSKILVTTRSR---------KVASIMGTRGGTTGFNLQGL 90 (629)
Q Consensus 23 l~~~L~~k~~LivlDdv~~~~-~~~~-~~~~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~~~~l~~L 90 (629)
+++.++ ..-+||+||+..-. ...| +.+...+.. ...|..||+|+... .+..++.. .-+++++++
T Consensus 200 ~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~---Gl~~~L~~p 275 (450)
T PRK14087 200 FKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNM---GLSIAIQKL 275 (450)
T ss_pred HHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhC---CceeccCCc
Confidence 333343 34578899995422 1122 233333321 13455788886542 22223322 257889999
Q ss_pred ChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 048833 91 PFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLL 139 (629)
Q Consensus 91 ~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L 139 (629)
+.++-.+++.+.+-..+... .--+++..-|++.+.|.|..+..+-..+
T Consensus 276 d~e~r~~iL~~~~~~~gl~~-~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 276 DNKTATAIIKKEIKNQNIKQ-EVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred CHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99999999998884332110 1113567789999999988876554333
No 152
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.27 E-value=25 Score=37.71 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=64.0
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|++.....+.+..+...+........+|++|.+.+ +.....++ ...++++.++.++..+.+.+.+-..+
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SR--c~~~~f~~l~~~~i~~~L~~il~~eg 195 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR--CLQFNLKQMPPPLIVSHLQHILEQEN 195 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHH--HHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 5667899999987776777778877776556677777776543 22122211 26799999999998887766553323
Q ss_pred CCCChhHHHHHHHHHHhcCCCch
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPL 130 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPL 130 (629)
.... ......+++.++|.+.
T Consensus 196 i~~~---~~al~~la~~s~Gslr 215 (527)
T PRK14969 196 IPFD---ATALQLLARAAAGSMR 215 (527)
T ss_pred CCCC---HHHHHHHHHHcCCCHH
Confidence 2221 2345678888999665
No 153
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=72.76 E-value=37 Score=36.77 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=65.7
Q ss_pred ceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccCC
Q 048833 30 KRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEER 108 (629)
Q Consensus 30 k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 108 (629)
++=++|+|+++.-...++..+...+........+|++|... .+......+ ...+++.+++.++....+...+-..+.
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SR--cq~ieF~~Ls~~eL~~~L~~il~kegi 196 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISR--CQRYNFKKLNNSELQELLKSIAKKEKI 196 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhh--hhhcccCCCCHHHHHHHHHHHHHHcCC
Confidence 33359999997766677888888777655566666666443 343333322 367999999999998888776643332
Q ss_pred CCChhHHHHHHHHHHhcCCCch-HHHHHH
Q 048833 109 DKHPNLVKIGVEIVKKCGGIPL-AVRTLG 136 (629)
Q Consensus 109 ~~~~~~~~~~~~i~~~c~glPL-al~~~g 136 (629)
...+ ..+..+++.++|-+. |+..+-
T Consensus 197 ~Is~---eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 197 KIED---NAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred CCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 2222 345678888988554 444443
No 154
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=71.55 E-value=7.2 Score=32.61 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHcCCce-EEEEEecCCCC-ChhhHHHHHHhhCCCCCCcEEEEEcCC
Q 048833 15 NLDQLQKVLRYSLKGKR-YLLVMDDVWNE-DPEAWCKLKSLLLGGANGSKILVTTRS 69 (629)
Q Consensus 15 ~~~~~~~~l~~~L~~k~-~LivlDdv~~~-~~~~~~~~~~~~~~~~~gs~iivTTR~ 69 (629)
+.+++.+.+.+.+...+ .+||+|++..- +...++.+..... ..+-+||++.+.
T Consensus 71 ~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 71 TSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp -HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 56777788888887655 59999999554 4445555544443 677778877654
No 155
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=70.46 E-value=30 Score=37.77 Aligned_cols=101 Identities=18% Similarity=0.153 Sum_probs=68.0
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcC-ChHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTR-SRKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR-~~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|++..-.....+.+...+..-...+++|++|. ...+.....++ ...++++.++.++..+.+.+.+-..+
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SR--cq~~~f~~l~~~el~~~L~~i~~keg 208 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSR--CQRFDLRRIEADVLAAHLSRIAAKEG 208 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhh--eeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4455789999977666677888877776556777776653 33444343332 36799999999999888887764333
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRT 134 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~ 134 (629)
....+ .....+++.++|-+.-+..
T Consensus 209 i~i~~---eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 209 VEVED---EALALIARAAEGSVRDGLS 232 (598)
T ss_pred CCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 33222 4456788899998765543
No 156
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=70.42 E-value=33 Score=35.35 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=50.0
Q ss_pred ceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhh-cc--cCCCCceeCCCCChhhHHHHHH
Q 048833 30 KRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVASIM-GT--RGGTTGFNLQGLPFEDCLSLFM 100 (629)
Q Consensus 30 k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~-~~--~~~~~~~~l~~L~~~~a~~Lf~ 100 (629)
++..|+||.| +....|......+.+.++. +|++|+-+..+...- .+ .|....+++-||+..|-..+-.
T Consensus 94 ~~~yifLDEI--q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~ 164 (398)
T COG1373 94 EKSYIFLDEI--QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKG 164 (398)
T ss_pred CCceEEEecc--cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcc
Confidence 7789999999 4557899888888887777 899998876543221 11 2334679999999999877543
No 157
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=68.00 E-value=34 Score=34.31 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=65.9
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++=.+|+|+++......+..+...+..-.+++.+|++|.+.+ +.....++ ...+.+.+++.++..+.+....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SR--cq~i~~~~~~~~~~~~~L~~~~---- 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSR--CRQFPMTVPAPEAAAAWLAAQG---- 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhc--CEEEEecCCCHHHHHHHHHHcC----
Confidence 4445778899988888899999988887778887777777644 44333332 3679999999999998886642
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRTL 135 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~~ 135 (629)
. .+ ...++..++|-|.....+
T Consensus 205 ~--~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 205 V--AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C--Ch-----HHHHHHHcCCCHHHHHHH
Confidence 1 11 123577889999754433
No 158
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.87 E-value=58 Score=34.62 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=63.8
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.+++-++|+|+++.-....++.+...+........+|++|.+ ..+......+ ...+++.+++.++..+.+...+-..
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SR--c~~i~f~~ls~~el~~~L~~i~k~e 194 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSR--CQRFIFSKPTKEQIKEYLKRICNEE 194 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHh--ceEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356678999999766666777777777665555666665543 3343333322 2578999999999888777765433
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchHHH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLAVR 133 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLal~ 133 (629)
+....+ ..+..+++.++|.+..+.
T Consensus 195 gi~id~---~al~~La~~s~G~lr~al 218 (486)
T PRK14953 195 KIEYEE---KALDLLAQASEGGMRDAA 218 (486)
T ss_pred CCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 322222 345677788888665443
No 159
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.79 E-value=71 Score=34.76 Aligned_cols=105 Identities=15% Similarity=0.214 Sum_probs=69.6
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|++..-.....+.+...+........+|++|.+ ..+.....++ ...|++..++.++..+.+.+.+-..+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SR--c~~~~F~~l~~~~i~~~L~~i~~~eg 194 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR--THHYPFRLLPPRTMRALIARICEQEG 194 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHh--ceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 55568899999877777888888888766667776666654 4444333332 37899999999998888877664333
Q ss_pred CCCChhHHHHHHHHHHhcCCCch-HHHHHHhh
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPL-AVRTLGSL 138 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPL-al~~~g~~ 138 (629)
.... ......|++.++|-+. |+..+-.+
T Consensus 195 i~i~---~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 195 VVVD---DAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3222 2345677888888664 44444433
No 160
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.73 E-value=41 Score=35.93 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=64.0
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
++.-++|+|+|+.-....+..+...+.......++|++|.+. .+.....++ ...+++++++.++..+.+...+-..+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SR--c~~~~f~~l~~~~i~~~l~~il~~eg 195 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR--CLQFHLAQLPPLQIAAHCQHLLKEEN 195 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHH--hhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 556678899998767778888888777655677777776654 333222222 36789999999887766555543333
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
....+ .....+++.++|-+..+
T Consensus 196 i~~~~---~al~~ia~~s~GslR~a 217 (509)
T PRK14958 196 VEFEN---AALDLLARAANGSVRDA 217 (509)
T ss_pred CCCCH---HHHHHHHHHcCCcHHHH
Confidence 22222 33457788888876544
No 161
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=67.58 E-value=83 Score=31.25 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=67.2
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++=.+|+|++..........+...+..-..++.+|++|.+. .+.....++ ...+.+.+++.+++.+.+....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR--Cq~~~~~~~~~~~~~~~L~~~~---- 180 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR--CQQWVVTPPSTAQAMQWLKGQG---- 180 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc--ceeEeCCCCCHHHHHHHHHHcC----
Confidence 344577889998877888888888887767778888877765 444444432 4789999999999988776532
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRTL 135 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~~ 135 (629)
.. .+..++..++|-|+....+
T Consensus 181 ~~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 181 IT-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred Cc-------hHHHHHHHcCCCHHHHHHH
Confidence 11 1346788899999866544
No 162
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.58 E-value=58 Score=35.82 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=66.5
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|++.....+.+..+...+..-.....+|++|.+. .+......+ ...+++..++.++..+.+.+.+-..+
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSR--c~~~~f~~l~~~ei~~~L~~ia~keg 197 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISR--CQRFDFRRIPLEAMVQHLSEIAEKES 197 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhh--eeEEEecCCCHHHHHHHHHHHHHHhC
Confidence 455688999997766677888888777655556666666554 333333322 36788889999988887777664332
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRTL 135 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~~ 135 (629)
....+ ..+..+++.++|-+..+..+
T Consensus 198 i~is~---~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 198 IEIEP---EALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred CCCCH---HHHHHHHHHcCCCHHHHHHH
Confidence 22222 34678888999877544433
No 163
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=64.63 E-value=90 Score=30.70 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=51.8
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHh
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKC 102 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 102 (629)
+.+=++|+||+..........+...+..-..++.+|++|.+ ..+.....++ ..++++.++++++..+.+...
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SR--c~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSR--CQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhC--eEEEECCCCCHHHHHHHHHHc
Confidence 46777888999777777788888888877778888876654 3444333332 378999999999988766543
No 164
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=64.09 E-value=40 Score=33.75 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=66.9
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++=.+|+|+++.........+...+..-..++.+|++|.+.+ +.....++ ...+.+.+++.+++.+.+.... +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR--Cq~~~~~~~~~~~~~~~L~~~~---~ 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR--CRLHYLAPPPEQYALTWLSREV---T 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc--cccccCCCCCHHHHHHHHHHcc---C
Confidence 5566788999988888888888888887677888888887754 44443332 3678999999999888775432 1
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
.++ ..+..++..++|.|...
T Consensus 182 --~~~---~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 182 --MSQ---DALLAALRLSAGAPGAA 201 (334)
T ss_pred --CCH---HHHHHHHHHcCCCHHHH
Confidence 111 22567889999999643
No 165
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.37 E-value=66 Score=35.08 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=64.9
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-hHHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-RKVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|+|+.-....+..+...+........+|++|.+ ..+.....++ ...++++.++.++..+.+...+-..+
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SR--c~~~~f~~l~~~~i~~~L~~i~~~eg 195 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR--CQRFDFRRIPLQKIVDRLRYIADQEG 195 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHh--hhhhhcCCCCHHHHHHHHHHHHHHhC
Confidence 44557889999776667788888877765566777766654 4444433332 36788999999988877766553323
Q ss_pred CCCChhHHHHHHHHHHhcCCCc-hHHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIP-LAVRTL 135 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glP-Lal~~~ 135 (629)
.... ......+++.++|-. .|+..+
T Consensus 196 i~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 196 ISIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2222 234567888888854 444444
No 166
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=58.80 E-value=92 Score=31.17 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=52.8
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHh
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKC 102 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 102 (629)
.+.+=.+|+|++..........+...+..-..++.+|++|.+.+ +.....++ ...+++.+++.++..+.+...
T Consensus 108 ~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR--c~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR--CQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh--ceeeeCCCCCHHHHHHHHHHc
Confidence 34555688999977777777888888877667888888887643 33333332 478999999999988777643
No 167
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=58.26 E-value=13 Score=32.77 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHcC-----CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCC
Q 048833 15 NLDQLQKVLRYSLK-----GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQ 88 (629)
Q Consensus 15 ~~~~~~~~l~~~L~-----~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~ 88 (629)
..+++. .+.+.+. +++=.+|+||++....+.+..+...+.....++++|++|++.+ +.....++ ...+.+.
T Consensus 83 ~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR--c~~i~~~ 159 (162)
T PF13177_consen 83 KIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSR--CQVIRFR 159 (162)
T ss_dssp SHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT--SEEEEE-
T ss_pred hHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh--ceEEecC
Confidence 345554 4444443 3456788999988888899999998888788999999998865 34333332 2456665
Q ss_pred CC
Q 048833 89 GL 90 (629)
Q Consensus 89 ~L 90 (629)
++
T Consensus 160 ~l 161 (162)
T PF13177_consen 160 PL 161 (162)
T ss_dssp --
T ss_pred CC
Confidence 54
No 168
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=54.83 E-value=58 Score=33.51 Aligned_cols=97 Identities=18% Similarity=0.096 Sum_probs=54.8
Q ss_pred CceEEEEEecCCCC-----------ChhhHHHHHHhh---CC--CCCCcEEEEEcCChHHHHhhccc--CCCCceeCCCC
Q 048833 29 GKRYLLVMDDVWNE-----------DPEAWCKLKSLL---LG--GANGSKILVTTRSRKVASIMGTR--GGTTGFNLQGL 90 (629)
Q Consensus 29 ~k~~LivlDdv~~~-----------~~~~~~~~~~~~---~~--~~~gs~iivTTR~~~v~~~~~~~--~~~~~~~l~~L 90 (629)
..+.+|++||++.- +.+....+...+ .+ ...+-+||.||...+.....--+ .-...++++..
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 45689999999531 111122222222 21 12356788888776543322111 11257999999
Q ss_pred ChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCc
Q 048833 91 PFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIP 129 (629)
Q Consensus 91 ~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 129 (629)
+.++-.++|+.+..+......-++ ..+++.+.|.-
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLADDVDL----EELAELTEGAS 337 (389)
T ss_pred CHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCC
Confidence 999999999988754433222233 34556666643
No 169
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=54.21 E-value=1.8e+02 Score=31.57 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=62.9
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.+++-++|+|++..-....+..+...+........+|++|... .+......+ ...+++.+++.++..+.+...+-..
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR--c~~~~f~~~~~~ei~~~L~~i~~~e 194 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSR--CQRFDFKRISVEDIVERLKYILDKE 194 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH--heEEecCCCCHHHHHHHHHHHHHHc
Confidence 3566678999997766677888887776544555556555443 333222221 2568899999999888887766433
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLA 131 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLa 131 (629)
+.... ......+++.++|-+..
T Consensus 195 gi~i~---~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 195 GIEYE---DEALRLIARAAEGGMRD 216 (559)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHH
Confidence 33222 23456778888886653
No 170
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=53.67 E-value=1.3e+02 Score=27.42 Aligned_cols=84 Identities=12% Similarity=0.184 Sum_probs=52.5
Q ss_pred HHHHHHHHHH---HcCCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhccc-----------C
Q 048833 16 LDQLQKVLRY---SLKGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTR-----------G 80 (629)
Q Consensus 16 ~~~~~~~l~~---~L~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~-----------~ 80 (629)
+++..+.+.+ .-..+|+ |+|++......++..+...+-.-..+..+|++|.+.+ +.....++ .
T Consensus 39 Vd~iReii~~~~~~~~~~k~--iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~ 116 (206)
T PRK08485 39 IEDAKEVIAEAYIAESEEKI--IVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPV 116 (206)
T ss_pred HHHHHHHHHHHhhCCCCcEE--EEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccccccc
Confidence 3554444333 2224454 5678877777888888888776667777777777654 33222211 0
Q ss_pred CCCceeCCCCChhhHHHHHHH
Q 048833 81 GTTGFNLQGLPFEDCLSLFMK 101 (629)
Q Consensus 81 ~~~~~~l~~L~~~~a~~Lf~~ 101 (629)
....+.+++|+.++..+.+..
T Consensus 117 ~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 117 KPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred cccccccCCCCHHHHHHHHHH
Confidence 012477899999999998877
No 171
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=52.81 E-value=96 Score=30.24 Aligned_cols=74 Identities=11% Similarity=0.105 Sum_probs=44.3
Q ss_pred eEEEEEecCCCC---------ChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhh--c----ccCCCCceeCCCCChhhH
Q 048833 31 RYLLVMDDVWNE---------DPEAWCKLKSLLLGGANGSKILVTTRSRKVASIM--G----TRGGTTGFNLQGLPFEDC 95 (629)
Q Consensus 31 ~~LivlDdv~~~---------~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~--~----~~~~~~~~~l~~L~~~~a 95 (629)
.-+|+||++..- ..+.+..+...+.....+-+||++|.....-... . .+ -...+++++++.+|-
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR-~~~~i~fp~l~~edl 200 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSR-VAHHVDFPDYSEAEL 200 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhh-CCcEEEeCCcCHHHH
Confidence 358889999521 1223345555555545566777776543221111 1 11 125689999999999
Q ss_pred HHHHHHhhcc
Q 048833 96 LSLFMKCAFK 105 (629)
Q Consensus 96 ~~Lf~~~a~~ 105 (629)
.+++...+-.
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9998887643
No 172
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=52.79 E-value=16 Score=34.01 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=31.4
Q ss_pred CceEEEEEecCCCC-ChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhhc
Q 048833 29 GKRYLLVMDDVWNE-DPEAWCKLKSLLLGGANGSKILVTTRSRKVASIMG 77 (629)
Q Consensus 29 ~k~~LivlDdv~~~-~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~ 77 (629)
+..-++|||||... |......+...+....+++-+||||-++.+...+.
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-S
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34568899999652 45555666666665566788999999998876653
No 173
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=52.63 E-value=1.1e+02 Score=34.88 Aligned_cols=108 Identities=9% Similarity=0.040 Sum_probs=59.7
Q ss_pred eEEEEEecCCCC---ChhhHHHHHHhhCCCCCCcEEEE--EcCChHH----HHhhcccCCCCceeCCCCChhhHHHHHHH
Q 048833 31 RYLLVMDDVWNE---DPEAWCKLKSLLLGGANGSKILV--TTRSRKV----ASIMGTRGGTTGFNLQGLPFEDCLSLFMK 101 (629)
Q Consensus 31 ~~LivlDdv~~~---~~~~~~~~~~~~~~~~~gs~iiv--TTR~~~v----~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~ 101 (629)
..+||||+|+.- +++.+-.+.... ...+++|+| +|.+.+. ...+.+.-....+..++.+.++-.+++..
T Consensus 870 v~IIILDEID~L~kK~QDVLYnLFR~~--~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~ 947 (1164)
T PTZ00112 870 VSILIIDEIDYLITKTQKVLFTLFDWP--TKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKE 947 (1164)
T ss_pred ceEEEeehHhhhCccHHHHHHHHHHHh--hccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHH
Confidence 458999999541 122222222221 134666655 3433222 22222222223467799999999999998
Q ss_pred hhcccC-CCCChhHHHHHHHHHHhcCCCchHHHHHHhhhc
Q 048833 102 CAFKEE-RDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLY 140 (629)
Q Consensus 102 ~a~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~ 140 (629)
.+-... .-.+..++-+|+.++..-|-.-.||.++-.+..
T Consensus 948 RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 948 RLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred HHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 875432 222234445566666555667778777766654
No 174
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=50.42 E-value=88 Score=34.08 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=52.3
Q ss_pred EEEEEecCCCCC-hhhHH-HHHHhhCC-CCCCcEEEEEcCCh---------HHHHhhcccCCCCceeCCCCChhhHHHHH
Q 048833 32 YLLVMDDVWNED-PEAWC-KLKSLLLG-GANGSKILVTTRSR---------KVASIMGTRGGTTGFNLQGLPFEDCLSLF 99 (629)
Q Consensus 32 ~LivlDdv~~~~-~~~~~-~~~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf 99 (629)
=+|||||+.... .+.|. .+...+.. ...|..|||||+.. .+..++.. .-+++++..+.+.-.+++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~---GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEW---GLITDVQPPELETRIAIL 455 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhc---CceEEcCCCCHHHHHHHH
Confidence 378899995431 12232 22222221 13456688888762 22233322 267999999999999999
Q ss_pred HHhhcccCCCCChhHHHHHHHHHHhcCCC
Q 048833 100 MKCAFKEERDKHPNLVKIGVEIVKKCGGI 128 (629)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 128 (629)
.+++-..+.... .++..-|++.+.+.
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rn 481 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRN 481 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCC
Confidence 988854443333 24445555555544
No 175
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=50.24 E-value=33 Score=28.75 Aligned_cols=46 Identities=17% Similarity=0.095 Sum_probs=27.3
Q ss_pred HcCCceEEEEEecCCCCChhhHHHHHHhhCCC------CCCcEEEEEcCChH
Q 048833 26 SLKGKRYLLVMDDVWNEDPEAWCKLKSLLLGG------ANGSKILVTTRSRK 71 (629)
Q Consensus 26 ~L~~k~~LivlDdv~~~~~~~~~~~~~~~~~~------~~gs~iivTTR~~~ 71 (629)
....+..++|+||++.........+...+... ..+.+||+||....
T Consensus 80 ~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 80 AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 34467899999999753222222333333322 36788999987653
No 176
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=49.71 E-value=11 Score=21.48 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=9.3
Q ss_pred cccEEEcCCCCcccccc
Q 048833 337 FLRVLNLSESSIEVCSR 353 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~ 353 (629)
+|+.|++++|.+.++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 35555555555555553
No 177
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=49.51 E-value=1.6e+02 Score=27.98 Aligned_cols=107 Identities=19% Similarity=0.140 Sum_probs=59.3
Q ss_pred CCce-EEEEEecCCCCChhhHHHHHHhhCCCCCCc---EEEEEcCCh-------HHHHhhcccCCCCc-eeCCCCChhhH
Q 048833 28 KGKR-YLLVMDDVWNEDPEAWCKLKSLLLGGANGS---KILVTTRSR-------KVASIMGTRGGTTG-FNLQGLPFEDC 95 (629)
Q Consensus 28 ~~k~-~LivlDdv~~~~~~~~~~~~~~~~~~~~gs---~iivTTR~~-------~v~~~~~~~~~~~~-~~l~~L~~~~a 95 (629)
+++| +.+++||...-..+..+.++........+| +|+..-.-+ .+......+ ..+ |++.+++.++.
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R--~~ir~~l~P~~~~~t 205 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQR--IDIRIELPPLTEAET 205 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhhe--EEEEEecCCcChHHH
Confidence 4677 899999996655555666555444222222 233332211 111222221 234 99999999987
Q ss_pred HHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHH
Q 048833 96 LSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLG 136 (629)
Q Consensus 96 ~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g 136 (629)
-....+..-++..+.+---......|...-.|.|.++..++
T Consensus 206 ~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 206 GLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 77766655443221110112344567778889999886554
No 178
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=47.84 E-value=5.7 Score=21.80 Aligned_cols=6 Identities=67% Similarity=0.744 Sum_probs=1.8
Q ss_pred ceeecc
Q 048833 362 RYLDLS 367 (629)
Q Consensus 362 ~~L~l~ 367 (629)
++|+|+
T Consensus 5 ~~L~l~ 10 (24)
T PF13516_consen 5 ETLDLS 10 (24)
T ss_dssp SEEE-T
T ss_pred CEEEcc
Confidence 333333
No 179
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=47.05 E-value=75 Score=32.62 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=55.7
Q ss_pred eEEEEEecCCCCC-----hhhHHHHHHhhCCCCCCcEEEEEcCCh---------HHHHhhcccCCCCceeCCCCChhhHH
Q 048833 31 RYLLVMDDVWNED-----PEAWCKLKSLLLGGANGSKILVTTRSR---------KVASIMGTRGGTTGFNLQGLPFEDCL 96 (629)
Q Consensus 31 ~~LivlDdv~~~~-----~~~~~~~~~~~~~~~~gs~iivTTR~~---------~v~~~~~~~~~~~~~~l~~L~~~~a~ 96 (629)
-=++++||++--. ++.+-.+...+.. .|..||+|++.. ++..++.. .-++++++++.+...
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~---Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEW---GLVVEIEPPDDETRL 250 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhc---eeEEeeCCCCHHHHH
Confidence 3488899995411 2222222333332 444899998542 34444443 268999999999999
Q ss_pred HHHHHhhcccCCCCCh-hHHHHHHHHHHhcCCCchHHH
Q 048833 97 SLFMKCAFKEERDKHP-NLVKIGVEIVKKCGGIPLAVR 133 (629)
Q Consensus 97 ~Lf~~~a~~~~~~~~~-~~~~~~~~i~~~c~glPLal~ 133 (629)
.++.+.+...+...++ -..-+++.+.+-.+-+.-|+.
T Consensus 251 aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~ 288 (408)
T COG0593 251 AILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALN 288 (408)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 9999877554433332 333344444444444444443
No 180
>PF14516 AAA_35: AAA-like domain
Probab=44.34 E-value=1.2e+02 Score=30.35 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=42.0
Q ss_pred CceeCCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCC
Q 048833 83 TGFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDS 142 (629)
Q Consensus 83 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~ 142 (629)
..+++++.+.+|..+|...+.... .+ ....++...++|+|.-+..++..+..+
T Consensus 194 ~~i~L~~Ft~~ev~~L~~~~~~~~----~~---~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 194 QPIELPDFTPEEVQELAQRYGLEF----SQ---EQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cceeCCCCCHHHHHHHHHhhhccC----CH---HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 478899999999999998775321 11 126789999999999999999999753
No 181
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=42.95 E-value=1e+02 Score=31.85 Aligned_cols=98 Identities=17% Similarity=0.080 Sum_probs=53.3
Q ss_pred EEEEEecCCCCChh-hH-HHHHHhhCC-CCCCcEEEEEcCCh-HHHH----hhcccC-CCCceeCCCCChhhHHHHHHHh
Q 048833 32 YLLVMDDVWNEDPE-AW-CKLKSLLLG-GANGSKILVTTRSR-KVAS----IMGTRG-GTTGFNLQGLPFEDCLSLFMKC 102 (629)
Q Consensus 32 ~LivlDdv~~~~~~-~~-~~~~~~~~~-~~~gs~iivTTR~~-~v~~----~~~~~~-~~~~~~l~~L~~~~a~~Lf~~~ 102 (629)
-+|||||+..-... .+ +.+...+.. ...|..||+||... .... .+.++- ...++++++.+.++-.+++...
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 37889999542111 11 122222221 12455688877642 2111 122211 1246899999999999999888
Q ss_pred hcccCCCCChhHHHHHHHHHHhcCCCchHH
Q 048833 103 AFKEERDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 103 a~~~~~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
+-..+...+ +++...|++.+.|-.-.+
T Consensus 281 ~~~~~~~l~---~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 281 AEEEGLELP---DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHcCCCCC---HHHHHHHHHhcCCCHHHH
Confidence 754433322 345566777777765543
No 182
>CHL00181 cbbX CbbX; Provisional
Probab=42.84 E-value=2.2e+02 Score=27.88 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=45.1
Q ss_pred EEEEEecCCCC---------ChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhh------cccCCCCceeCCCCChhhHH
Q 048833 32 YLLVMDDVWNE---------DPEAWCKLKSLLLGGANGSKILVTTRSRKVASIM------GTRGGTTGFNLQGLPFEDCL 96 (629)
Q Consensus 32 ~LivlDdv~~~---------~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~------~~~~~~~~~~l~~L~~~~a~ 96 (629)
-.|++|++..- ..+.-..+...+.+...+-+||+++....+.... ..+ -...+.+++++.+|..
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR-~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSR-IANHVDFPDYTPEELL 202 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHh-CCceEEcCCcCHHHHH
Confidence 48899999531 1222234444454555567788887654432211 111 1257899999999999
Q ss_pred HHHHHhhccc
Q 048833 97 SLFMKCAFKE 106 (629)
Q Consensus 97 ~Lf~~~a~~~ 106 (629)
+++...+-..
T Consensus 203 ~I~~~~l~~~ 212 (287)
T CHL00181 203 QIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHh
Confidence 9988877443
No 183
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=42.56 E-value=1.3e+02 Score=28.14 Aligned_cols=115 Identities=20% Similarity=0.195 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhCCC--------CCCc-----------EEEEEcCChHHHHh
Q 048833 15 NLDQLQKVLRYSLKGKRYLLVMDDVWNEDPEAWCKLKSLLLGG--------ANGS-----------KILVTTRSRKVASI 75 (629)
Q Consensus 15 ~~~~~~~~l~~~L~~k~~LivlDdv~~~~~~~~~~~~~~~~~~--------~~gs-----------~iivTTR~~~v~~~ 75 (629)
...+++..+. .++ ++-++++|.+..-...+-+.+..+..++ +.+. -|=-|||.--+..-
T Consensus 88 k~~dl~~il~-~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~p 165 (233)
T PF05496_consen 88 KAGDLAAILT-NLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSP 165 (233)
T ss_dssp SCHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHC
T ss_pred hHHHHHHHHH-hcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchh
Confidence 3455554443 354 4557778999775544444455444332 3323 24467877544444
Q ss_pred hcccCCCCceeCCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHH
Q 048833 76 MGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTL 135 (629)
Q Consensus 76 ~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 135 (629)
+..+.+ -+.+++.-+.+|-.++..+.+-.-+.. --++.+.+|+++|.|-|.-..-+
T Consensus 166 LrdRFg-i~~~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 166 LRDRFG-IVLRLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp CCTTSS-EEEE----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTTSHHHHHHH
T ss_pred HHhhcc-eecchhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCCChHHHHHH
Confidence 444322 345799999999999998877433322 33467889999999999654433
No 184
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=42.20 E-value=30 Score=31.72 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=22.9
Q ss_pred HcCCc---eEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHH
Q 048833 26 SLKGK---RYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKV 72 (629)
Q Consensus 26 ~L~~k---~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v 72 (629)
+++++ ..+||+|.+.+...+++..+ +-.-+.|||||++--..++
T Consensus 112 ~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 112 FIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDPSQI 158 (205)
T ss_dssp GGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE-----
T ss_pred hhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecCceee
Confidence 34554 46999999966555555544 4444789999999765544
No 185
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=40.41 E-value=90 Score=30.90 Aligned_cols=71 Identities=11% Similarity=0.212 Sum_probs=42.3
Q ss_pred CceEEEEEecCCCC-ChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHH
Q 048833 29 GKRYLLVMDDVWNE-DPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMK 101 (629)
Q Consensus 29 ~k~~LivlDdv~~~-~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~ 101 (629)
+.+-+||+||+... ..+....+...+.....++++|+||...+ +......+ ...+.++..+.++..+++..
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR--~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR--CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh--ceEEEeCCCCHHHHHHHHHH
Confidence 34567889999654 22233444444555557789999997643 22222222 24577777778877766544
No 186
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=40.11 E-value=3.3e+02 Score=25.82 Aligned_cols=48 Identities=27% Similarity=0.445 Sum_probs=31.3
Q ss_pred CCceEEEEEecCC-CCChhhHHHHHHhhCCC----CCCcEEEEEcCChHHHHh
Q 048833 28 KGKRYLLVMDDVW-NEDPEAWCKLKSLLLGG----ANGSKILVTTRSRKVASI 75 (629)
Q Consensus 28 ~~k~~LivlDdv~-~~~~~~~~~~~~~~~~~----~~gs~iivTTR~~~v~~~ 75 (629)
+..||+|++||.. +.+......++..+.++ ...-.|..||--+|+...
T Consensus 104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 4579999999983 23345667777777653 234456677766776543
No 187
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=39.87 E-value=24 Score=20.11 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=6.4
Q ss_pred cccEEEcCCCCcc
Q 048833 337 FLRVLNLSESSIE 349 (629)
Q Consensus 337 ~L~~L~l~~~~~~ 349 (629)
+|++|+++.|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 3455555555443
No 188
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=38.96 E-value=1.9e+02 Score=30.40 Aligned_cols=98 Identities=13% Similarity=-0.018 Sum_probs=52.6
Q ss_pred ceEEEEEecCCCC-ChhhH-HHHHHhhCC-CCCCcEEEEEcC-ChHHH----HhhcccC-CCCceeCCCCChhhHHHHHH
Q 048833 30 KRYLLVMDDVWNE-DPEAW-CKLKSLLLG-GANGSKILVTTR-SRKVA----SIMGTRG-GTTGFNLQGLPFEDCLSLFM 100 (629)
Q Consensus 30 k~~LivlDdv~~~-~~~~~-~~~~~~~~~-~~~gs~iivTTR-~~~v~----~~~~~~~-~~~~~~l~~L~~~~a~~Lf~ 100 (629)
+.-+|++||+..- +...+ ..+...+.. ...|..||+||. ...-. ....++- ...++++++.+.++-.+++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 4558999999532 11111 122222211 123456888874 33222 2222211 12578899999999999998
Q ss_pred HhhcccCCCCChhHHHHHHHHHHhcCCCch
Q 048833 101 KCAFKEERDKHPNLVKIGVEIVKKCGGIPL 130 (629)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 130 (629)
+.+-..+...+ +++...|++.+.|---
T Consensus 274 ~~~~~~~~~l~---~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 274 KMLEIEHGELP---EEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHhcCCCCC---HHHHHHHHhccccCHH
Confidence 88743333322 2455667777766433
No 189
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=37.07 E-value=1.4e+02 Score=31.54 Aligned_cols=99 Identities=15% Similarity=0.070 Sum_probs=55.2
Q ss_pred eEEEEEecCCCCCh-hhH-HHHHHhhCC-CCCCcEEEEEcCChH-----HHHhhcccC-CCCceeCCCCChhhHHHHHHH
Q 048833 31 RYLLVMDDVWNEDP-EAW-CKLKSLLLG-GANGSKILVTTRSRK-----VASIMGTRG-GTTGFNLQGLPFEDCLSLFMK 101 (629)
Q Consensus 31 ~~LivlDdv~~~~~-~~~-~~~~~~~~~-~~~gs~iivTTR~~~-----v~~~~~~~~-~~~~~~l~~L~~~~a~~Lf~~ 101 (629)
.-+|||||+..-.. ..+ ..+...+.. ...|..||+||.... +...+.++- ...++++++.+.++-.+++..
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 44889999954211 111 122222211 123556888876531 111222211 125799999999999999998
Q ss_pred hhcccCCCCChhHHHHHHHHHHhcCCCchHH
Q 048833 102 CAFKEERDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
.+-..+...+ +++...|++.+.|-.-.+
T Consensus 292 ~~~~~~~~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 292 KAEEEGIDLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHcCCCCC---HHHHHHHHcCcCCCHHHH
Confidence 8854333222 245667778888766543
No 190
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=33.91 E-value=2e+02 Score=30.18 Aligned_cols=94 Identities=11% Similarity=-0.016 Sum_probs=49.2
Q ss_pred eEEEEEecCCCCChhhH--HHHHHhhCC-CCCCcEEEEEcCCh-----HHHHhhcccC-CCCceeCCCCChhhHHHHHHH
Q 048833 31 RYLLVMDDVWNEDPEAW--CKLKSLLLG-GANGSKILVTTRSR-----KVASIMGTRG-GTTGFNLQGLPFEDCLSLFMK 101 (629)
Q Consensus 31 ~~LivlDdv~~~~~~~~--~~~~~~~~~-~~~gs~iivTTR~~-----~v~~~~~~~~-~~~~~~l~~L~~~~a~~Lf~~ 101 (629)
.-++++||+.......| +.+...+.. ...|..||+||... .+...+.++- ....+++++++.++-.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 44788899854221111 122222211 12356788888542 1222332221 125789999999999999988
Q ss_pred hhcccCCCCChhHHHHHHHHHHhcCC
Q 048833 102 CAFKEERDKHPNLVKIGVEIVKKCGG 127 (629)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~i~~~c~g 127 (629)
.+-..+...++ ++..-+++.+.|
T Consensus 283 k~~~~~~~l~~---evl~~la~~~~~ 305 (445)
T PRK12422 283 KAEALSIRIEE---TALDFLIEALSS 305 (445)
T ss_pred HHHHcCCCCCH---HHHHHHHHhcCC
Confidence 87543333222 233344554443
No 191
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=32.49 E-value=81 Score=27.60 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=30.6
Q ss_pred HHHHHcC-CceEEEEEecCCC---CChhhHHHHHHhhCCCCCCcEEEEEcCChH
Q 048833 22 VLRYSLK-GKRYLLVMDDVWN---EDPEAWCKLKSLLLGGANGSKILVTTRSRK 71 (629)
Q Consensus 22 ~l~~~L~-~k~~LivlDdv~~---~~~~~~~~~~~~~~~~~~gs~iivTTR~~~ 71 (629)
..++.+. +.-=|+|||.+-- -..-..+.+...+.....+.-||+|.|+..
T Consensus 86 ~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 86 FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3334443 4567999999822 112233455555555556778999999964
No 192
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=32.44 E-value=2.2e+02 Score=24.93 Aligned_cols=99 Identities=7% Similarity=0.033 Sum_probs=49.3
Q ss_pred CceEEEEEecC----CCCChhhHHHHHHhhCCCCCCcEEEEEcC-ChH----HHHhhcccCCCCceeCCCCChhhHHHHH
Q 048833 29 GKRYLLVMDDV----WNEDPEAWCKLKSLLLGGANGSKILVTTR-SRK----VASIMGTRGGTTGFNLQGLPFEDCLSLF 99 (629)
Q Consensus 29 ~k~~LivlDdv----~~~~~~~~~~~~~~~~~~~~gs~iivTTR-~~~----v~~~~~~~~~~~~~~l~~L~~~~a~~Lf 99 (629)
+.+-+||+.+. .......+..+...+....+++.+|+.+. ..+ ..+.... ...+++...+...+.....
T Consensus 56 ~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~--~~~~~~~~~~~~~~~~~~i 133 (172)
T PF06144_consen 56 GDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKK--QAIVIECKKPKEQELPRWI 133 (172)
T ss_dssp SSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTT--TEEEEEE----TTTHHHHH
T ss_pred CCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhc--ccceEEecCCCHHHHHHHH
Confidence 34555666665 22344678888888887778888888887 221 2222322 1245666777777776666
Q ss_pred HHhhcccCCCCChhHHHHHHHHHHhcCCCchHH
Q 048833 100 MKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
...+-..+.... ...++.+++..++-+.++
T Consensus 134 ~~~~~~~g~~i~---~~a~~~L~~~~~~d~~~l 163 (172)
T PF06144_consen 134 KERAKKNGLKID---PDAAQYLIERVGNDLSLL 163 (172)
T ss_dssp HHHHHHTT-EE----HHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHcCCCCC---HHHHHHHHHHhChHHHHH
Confidence 665543333222 244556666666665544
No 193
>PRK08116 hypothetical protein; Validated
Probab=32.24 E-value=45 Score=32.20 Aligned_cols=47 Identities=26% Similarity=0.390 Sum_probs=26.6
Q ss_pred HHHHcCCceEEEEEecCCCCChhhHHH--HHHhhCC-CCCCcEEEEEcCCh
Q 048833 23 LRYSLKGKRYLLVMDDVWNEDPEAWCK--LKSLLLG-GANGSKILVTTRSR 70 (629)
Q Consensus 23 l~~~L~~k~~LivlDdv~~~~~~~~~~--~~~~~~~-~~~gs~iivTTR~~ 70 (629)
+.+.+.+-. ||||||+.......|.. +...+.. ..+|..+||||...
T Consensus 172 ~~~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 172 IIRSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HHHHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 344455444 89999996544445543 3322221 24567799999643
No 194
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=30.43 E-value=2.1e+02 Score=29.59 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=55.3
Q ss_pred HHcCCceEEEEEecCCCC-----------Chh---hHHHHHHhhCC--CCCCcEEEEEcCChHHHHhhccc--CCCCcee
Q 048833 25 YSLKGKRYLLVMDDVWNE-----------DPE---AWCKLKSLLLG--GANGSKILVTTRSRKVASIMGTR--GGTTGFN 86 (629)
Q Consensus 25 ~~L~~k~~LivlDdv~~~-----------~~~---~~~~~~~~~~~--~~~gs~iivTTR~~~v~~~~~~~--~~~~~~~ 86 (629)
......+.+|++|+++.- +.+ .+..+...+.+ ...+-+||+||...+.....--+ .-...++
T Consensus 233 ~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~ 312 (398)
T PTZ00454 233 LARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIE 312 (398)
T ss_pred HHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEE
Confidence 334467899999998531 001 11122222222 23456788999876654332111 1125688
Q ss_pred CCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCc
Q 048833 87 LQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIP 129 (629)
Q Consensus 87 l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 129 (629)
++..+.++-.++|..+.-+......-++. ++++.+.|.-
T Consensus 313 ~~~P~~~~R~~Il~~~~~~~~l~~dvd~~----~la~~t~g~s 351 (398)
T PTZ00454 313 FPLPDRRQKRLIFQTITSKMNLSEEVDLE----DFVSRPEKIS 351 (398)
T ss_pred eCCcCHHHHHHHHHHHHhcCCCCcccCHH----HHHHHcCCCC
Confidence 99999999888888766433322222443 4455566653
No 195
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=29.82 E-value=48 Score=30.85 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=34.8
Q ss_pred CceEEEEEecCCCC-Chhh----HHHHHHhhCCCCCCcEEEEEcCChHHHHhhcccCCCCceeCC
Q 048833 29 GKRYLLVMDDVWNE-DPEA----WCKLKSLLLGGANGSKILVTTRSRKVASIMGTRGGTTGFNLQ 88 (629)
Q Consensus 29 ~k~~LivlDdv~~~-~~~~----~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~~~~l~ 88 (629)
.++-|+++|.+..- +..+ ...+...+.. ..++.+|++|-+.+++...........|.|.
T Consensus 108 ~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~-~~~~~~i~~TH~~el~~~~~~~~~v~~~~m~ 171 (218)
T cd03286 108 TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVK-KVKCLTLFSTHYHSLCDEFHEHGGVRLGHMA 171 (218)
T ss_pred CCCeEEEEecccCCCCchHHHHHHHHHHHHHHH-hcCCcEEEEeccHHHHHHhhcCcceEEEEEE
Confidence 57889999998431 1111 1122233432 2489999999999988776543322334443
No 196
>CHL00176 ftsH cell division protein; Validated
Probab=29.27 E-value=3e+02 Score=30.51 Aligned_cols=106 Identities=12% Similarity=0.131 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCceEEEEEecCCCC----------ChhhH----HHHHHhhCC--CCCCcEEEEEcCChHHHHhhcccC--
Q 048833 19 LQKVLRYSLKGKRYLLVMDDVWNE----------DPEAW----CKLKSLLLG--GANGSKILVTTRSRKVASIMGTRG-- 80 (629)
Q Consensus 19 ~~~~l~~~L~~k~~LivlDdv~~~----------~~~~~----~~~~~~~~~--~~~gs~iivTTR~~~v~~~~~~~~-- 80 (629)
+...+.+..+..+++|++||++.- ....+ ..+...+.+ ...+-.||.||...+.....-.++
T Consensus 264 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGR 343 (638)
T CHL00176 264 VRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGR 343 (638)
T ss_pred HHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhcccc
Confidence 444555666678899999999431 01122 222222222 234557777887765544321111
Q ss_pred CCCceeCCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCC
Q 048833 81 GTTGFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGI 128 (629)
Q Consensus 81 ~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 128 (629)
-...+.++..+.++-.++++.++-..... + ......+++.+.|.
T Consensus 344 Fd~~I~v~lPd~~~R~~IL~~~l~~~~~~--~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 344 FDRQITVSLPDREGRLDILKVHARNKKLS--P--DVSLELIARRTPGF 387 (638)
T ss_pred CceEEEECCCCHHHHHHHHHHHHhhcccc--h--hHHHHHHHhcCCCC
Confidence 12568888889999999998877432111 1 12235667777773
No 197
>PRK10536 hypothetical protein; Provisional
Probab=28.98 E-value=91 Score=29.77 Aligned_cols=44 Identities=11% Similarity=0.282 Sum_probs=29.4
Q ss_pred HcCCceE---EEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHH
Q 048833 26 SLKGKRY---LLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKV 72 (629)
Q Consensus 26 ~L~~k~~---LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v 72 (629)
+++++.+ +||+|...+-+..+...+ +-.-+.+||||+|--..++
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~~~~k~~---ltR~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTAAQMKMF---LTRLGENVTVIVNGDITQC 215 (262)
T ss_pred HhcCCcccCCEEEEechhcCCHHHHHHH---HhhcCCCCEEEEeCChhhc
Confidence 5566655 999999976655444444 3444789999998755443
No 198
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=28.58 E-value=1.3e+02 Score=24.65 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCC-ceEEEEEecCCCCChhh-----------HHHHHHhhCCCC---CCcEEEEEcCCh
Q 048833 17 DQLQKVLRYSLKG-KRYLLVMDDVWNEDPEA-----------WCKLKSLLLGGA---NGSKILVTTRSR 70 (629)
Q Consensus 17 ~~~~~~l~~~L~~-k~~LivlDdv~~~~~~~-----------~~~~~~~~~~~~---~gs~iivTTR~~ 70 (629)
..+.+.+.+.-+. ++.+|++||++.-.... ...+...+.... .+-.||.||...
T Consensus 44 ~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 44 QKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp HHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred cccccccccccccccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 3344444443333 38999999996533222 334444444322 345777777764
No 199
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=28.14 E-value=1.3e+02 Score=31.39 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=55.9
Q ss_pred HcCCceEEEEEecCCCC-----------Chh---hHHHHHHhhCC--CCCCcEEEEEcCChHHHHhhccc--CCCCceeC
Q 048833 26 SLKGKRYLLVMDDVWNE-----------DPE---AWCKLKSLLLG--GANGSKILVTTRSRKVASIMGTR--GGTTGFNL 87 (629)
Q Consensus 26 ~L~~k~~LivlDdv~~~-----------~~~---~~~~~~~~~~~--~~~gs~iivTTR~~~v~~~~~~~--~~~~~~~l 87 (629)
...+.+.+|+||+++.- +.+ ....+...+.+ ...+-+||.||...+.....-.+ .-...+++
T Consensus 272 A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~ 351 (438)
T PTZ00361 272 AEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEF 351 (438)
T ss_pred HHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEe
Confidence 33467889999997421 000 01112222222 13456888899877665443211 11257899
Q ss_pred CCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCc
Q 048833 88 QGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIP 129 (629)
Q Consensus 88 ~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 129 (629)
+..+.++..++|..+..+......-++. .++..+.|+-
T Consensus 352 ~~Pd~~~R~~Il~~~~~k~~l~~dvdl~----~la~~t~g~s 389 (438)
T PTZ00361 352 PNPDEKTKRRIFEIHTSKMTLAEDVDLE----EFIMAKDELS 389 (438)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCcCcCHH----HHHHhcCCCC
Confidence 9999999999999887443322222343 4455555543
No 200
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=28.04 E-value=5.3e+02 Score=24.60 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=40.1
Q ss_pred EEEEEecCCCCC--------hhhHHHHHHhhCCCCCCcEEEEEcCChHHHH------hhcccCCCCceeCCCCChhhHHH
Q 048833 32 YLLVMDDVWNED--------PEAWCKLKSLLLGGANGSKILVTTRSRKVAS------IMGTRGGTTGFNLQGLPFEDCLS 97 (629)
Q Consensus 32 ~LivlDdv~~~~--------~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~------~~~~~~~~~~~~l~~L~~~~a~~ 97 (629)
-+|++|++..-. .+..+.+...+......-.+|+++...+.-. ....+- ...++++.++.++-.+
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf-~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF-PISIDFPDYTVEELME 185 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc-ceEEEECCCCHHHHHH
Confidence 488999995411 1233344444444333335566654433211 111211 1458889999999999
Q ss_pred HHHHhhcc
Q 048833 98 LFMKCAFK 105 (629)
Q Consensus 98 Lf~~~a~~ 105 (629)
++.+.+-.
T Consensus 186 Il~~~~~~ 193 (261)
T TIGR02881 186 IAERMVKE 193 (261)
T ss_pred HHHHHHHH
Confidence 98877643
No 201
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=27.84 E-value=44 Score=19.21 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=6.0
Q ss_pred cccEEEcCCCCc
Q 048833 337 FLRVLNLSESSI 348 (629)
Q Consensus 337 ~L~~L~l~~~~~ 348 (629)
.|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 345555555544
No 202
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=27.28 E-value=2.2e+02 Score=27.48 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=61.0
Q ss_pred ceEEE-EEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 30 KRYLL-VMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 30 k~~Li-vlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
|.|=+ |+-.+++-..++-..++.......+.+|+|+..-+.. +..-..++ .-.++++..+++|-...+++-.-+.+
T Consensus 126 r~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSR--Cl~iRvpaps~eeI~~vl~~v~~kE~ 203 (351)
T KOG2035|consen 126 RPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSR--CLFIRVPAPSDEEITSVLSKVLKKEG 203 (351)
T ss_pred cceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhh--eeEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 34443 4444433223333455555555567888888654431 22212221 25689999999999999988876555
Q ss_pred CCCChhHHHHHHHHHHhcCC-CchHHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGG-IPLAVRTL 135 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 135 (629)
...+ .+++++|+++++| +..||-.+
T Consensus 204 l~lp---~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 204 LQLP---KELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred ccCc---HHHHHHHHHHhcccHHHHHHHH
Confidence 4433 5788999999877 45555443
No 203
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=26.27 E-value=2.8e+02 Score=27.08 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=48.4
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHH
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFM 100 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~ 100 (629)
+++=.+|+||++......+..+...+-.-..++.+|++|.+. .+.....++ ...+.+.. +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SR--cq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSR--TQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHc--ceeeeCCC-cHHHHHHHHH
Confidence 556678999998888888999988888766778788877665 355444443 36677766 5555555554
No 204
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=26.18 E-value=1.4e+02 Score=26.75 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=33.9
Q ss_pred HHHHHHcCC--ceEEEEEecCCCC-ChhhH----HHHHHhhCCCCCCcEEEEEcCChHHHHhhcc
Q 048833 21 KVLRYSLKG--KRYLLVMDDVWNE-DPEAW----CKLKSLLLGGANGSKILVTTRSRKVASIMGT 78 (629)
Q Consensus 21 ~~l~~~L~~--k~~LivlDdv~~~-~~~~~----~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~ 78 (629)
.++.+.+.. ++-++++|..-.. +...- ..+...+.. ..|+.+|++|.+.++...+..
T Consensus 67 ~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 67 KETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLADE 130 (185)
T ss_pred HHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhhc
Confidence 345555554 7889999998542 21111 122222322 247789999999987766543
No 205
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=26.16 E-value=1.4e+02 Score=31.86 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=44.4
Q ss_pred CceEEEEEecCCCC----C---hhh-----HHHHHHhhCCC--CCCcEEEEEcCChHHHHhhcccC--CCCceeCCCCCh
Q 048833 29 GKRYLLVMDDVWNE----D---PEA-----WCKLKSLLLGG--ANGSKILVTTRSRKVASIMGTRG--GTTGFNLQGLPF 92 (629)
Q Consensus 29 ~k~~LivlDdv~~~----~---~~~-----~~~~~~~~~~~--~~gs~iivTTR~~~v~~~~~~~~--~~~~~~l~~L~~ 92 (629)
+++++|++|+++.- . ... ...+...+.+. ..+..||.||...+.....-.++ -...++++..+.
T Consensus 288 g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 288 GRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred CCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence 47899999999631 0 011 12233333322 23455677776665543322211 124589999999
Q ss_pred hhHHHHHHHhh
Q 048833 93 EDCLSLFMKCA 103 (629)
Q Consensus 93 ~~a~~Lf~~~a 103 (629)
++..++|+.+.
T Consensus 368 e~r~~Il~~~l 378 (512)
T TIGR03689 368 EAAADIFSKYL 378 (512)
T ss_pred HHHHHHHHHHh
Confidence 99999999886
No 206
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=26.03 E-value=3.7e+02 Score=26.51 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcC--CceEEEEEecCCCCChh----hHHHHHHhhCCCCCCcEEEEEcCChHHHHhhc
Q 048833 17 DQLQKVLRYSLK--GKRYLLVMDDVWNEDPE----AWCKLKSLLLGGANGSKILVTTRSRKVASIMG 77 (629)
Q Consensus 17 ~~~~~~l~~~L~--~k~~LivlDdv~~~~~~----~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~ 77 (629)
++....+.+.+. ++|.+||+||++.-+.+ .|..+...+. .++..+|+..-.+.+.....
T Consensus 157 ~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~--~~~i~~Il~~D~~~l~~ai~ 221 (325)
T PF07693_consen 157 EELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLD--FPNIIFILAFDPEILEKAIE 221 (325)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcC--CCCeEEEEEecHHHHHHHHH
Confidence 445566666664 58999999999774433 3444444333 26777777765555555443
No 207
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.34 E-value=27 Score=36.65 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=24.0
Q ss_pred CCCccceEecccCCC--CccccccccCCCccceeecccc
Q 048833 452 QLSVLRTLSIESCPR--LISLPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 452 ~l~~L~~L~l~~~~~--~~~lp~~~~~l~~L~~L~l~~~ 488 (629)
+.+.+..+++++|.. +..+.......|+|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 556777788877653 3334443445678888888876
No 208
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=23.99 E-value=6.7e+02 Score=24.31 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=63.6
Q ss_pred HHHHHHHHHHH-cCCceEEEEEecCCCCC-hhhHHHHHHhhCCCCCCcEEEEEcCChH----HHHhhcccCCCCceeCCC
Q 048833 16 LDQLQKVLRYS-LKGKRYLLVMDDVWNED-PEAWCKLKSLLLGGANGSKILVTTRSRK----VASIMGTRGGTTGFNLQG 89 (629)
Q Consensus 16 ~~~~~~~l~~~-L~~k~~LivlDdv~~~~-~~~~~~~~~~~~~~~~gs~iivTTR~~~----v~~~~~~~~~~~~~~l~~ 89 (629)
.+++...+... |-+.+-++|+++..... ...|+.+...+....++..+|+++..-+ ..+..........++...
T Consensus 31 ~~~l~~~~~~~slf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~ 110 (302)
T TIGR01128 31 WNQLLEEAQTLPLFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKT 110 (302)
T ss_pred HHHHHHHhhccCcccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecC
Confidence 34444444432 44566778899986422 2457888887776666666777764311 111121101236677788
Q ss_pred CChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHH
Q 048833 90 LPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAV 132 (629)
Q Consensus 90 L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal 132 (629)
++..+-.......+-..+....+ ..+..+++.++|-..++
T Consensus 111 ~~~~~~~~~i~~~~~~~g~~i~~---~a~~~l~~~~~~d~~~l 150 (302)
T TIGR01128 111 PKEQELPRWIQARLKKLGLRIDP---DAVQLLAELVEGNLLAI 150 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhCcHHHHH
Confidence 88777777666665443333222 34556677777655443
No 209
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=23.87 E-value=5.8e+02 Score=24.34 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=53.3
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhhcc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFK 105 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~ 105 (629)
.+++=.+|+|++......+...+...+..-..++.+|++|.+. .+.....++ ...+.++.....++.++....+..
T Consensus 87 ~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSR--Cq~i~~~~p~~~~~~e~~~~~~~p 163 (263)
T PRK06581 87 ISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSR--CFKINVRSSILHAYNELYSQFIQP 163 (263)
T ss_pred cCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhc--eEEEeCCCCCHHHHHHHHHHhccc
Confidence 3567788899998777778888888887766777777666554 555444432 367888888887777777666643
No 210
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=23.80 E-value=2.1e+02 Score=28.56 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=45.7
Q ss_pred ceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHh
Q 048833 30 KRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKC 102 (629)
Q Consensus 30 k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 102 (629)
+|+ +|+|++..-+...-..+...+.....+..+|++|.+.+ +.....++ ...+.+.+++.+++.+-+...
T Consensus 114 ~kV-~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR--c~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 114 LRV-ILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR--CRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred ceE-EEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH--hhhhcCCCCCHHHHHHHHHhc
Confidence 444 45588877666666666666654445666777777754 33332221 377999999999988777543
No 211
>PRK13695 putative NTPase; Provisional
Probab=23.50 E-value=2.6e+02 Score=24.58 Aligned_cols=61 Identities=13% Similarity=0.272 Sum_probs=31.6
Q ss_pred ceEEEEEecCCCCC--hhhH-HHHHHhhCCCCCCcEEEEEcCChHHHH---hhcccCCCCceeCCCCChh
Q 048833 30 KRYLLVMDDVWNED--PEAW-CKLKSLLLGGANGSKILVTTRSRKVAS---IMGTRGGTTGFNLQGLPFE 93 (629)
Q Consensus 30 k~~LivlDdv~~~~--~~~~-~~~~~~~~~~~~gs~iivTTR~~~v~~---~~~~~~~~~~~~l~~L~~~ 93 (629)
+.=++|+|.+|..+ ...+ ..+...+ . .|.-+|+|+.+..+.. .........++++.+-+.+
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~-~--~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~ 162 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVL-D--SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRD 162 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHH-h--CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhh
Confidence 45558999876532 1223 2333333 2 3556888888765432 2223333355666554444
No 212
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=22.98 E-value=3.5e+02 Score=28.87 Aligned_cols=107 Identities=9% Similarity=0.088 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCceEEEEEecCCCC----C------hhhHHHHHH----hhCC--CCCCcEEEEEcCChHHHHhhccc--C
Q 048833 19 LQKVLRYSLKGKRYLLVMDDVWNE----D------PEAWCKLKS----LLLG--GANGSKILVTTRSRKVASIMGTR--G 80 (629)
Q Consensus 19 ~~~~l~~~L~~k~~LivlDdv~~~----~------~~~~~~~~~----~~~~--~~~gs~iivTTR~~~v~~~~~~~--~ 80 (629)
+.+.+.+..+..+.+|++|+++.- + ...+..... .+.+ ...+-.||.||...+.....-.+ .
T Consensus 136 l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gR 215 (495)
T TIGR01241 136 VRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGR 215 (495)
T ss_pred HHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCc
Confidence 334444444566789999999431 0 112222221 2221 12344566677665433321111 1
Q ss_pred CCCceeCCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCc
Q 048833 81 GTTGFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIP 129 (629)
Q Consensus 81 ~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 129 (629)
-...++++..+.++-.++|+.+.-........++ ..+++.+.|.-
T Consensus 216 fd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l----~~la~~t~G~s 260 (495)
T TIGR01241 216 FDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDL----KAVARRTPGFS 260 (495)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhH----HHHHHhCCCCC
Confidence 1256889989998888998877643222211122 36677777743
No 213
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=21.11 E-value=1.4e+02 Score=21.34 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHhhhcCCC
Q 048833 114 LVKIGVEIVKKCGGIPLAVRTLGSLLYDST 143 (629)
Q Consensus 114 ~~~~~~~i~~~c~glPLal~~~g~~L~~~~ 143 (629)
+..+--.|++.|+|++=-+.++-+.|+.++
T Consensus 3 ~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkT 32 (62)
T PF14050_consen 3 FDNMLLSIAQQCGGIEDFLDTFFSFLRRKT 32 (62)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Confidence 455667899999999999999999999776
Done!