Query 048833
Match_columns 629
No_of_seqs 350 out of 3673
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 00:37:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-33 6.1E-38 300.9 17.4 232 15-271 227-472 (549)
2 3rgz_A Protein brassinosteroid 99.9 5.1E-26 1.8E-30 254.3 21.2 285 336-622 394-766 (768)
3 1vt4_I APAF-1 related killer D 99.9 1.3E-25 4.3E-30 243.2 14.5 199 16-263 227-436 (1221)
4 3v47_A TOLL-like receptor 5B a 99.9 2.3E-24 7.8E-29 226.9 23.7 299 281-598 28-406 (455)
5 4eco_A Uncharacterized protein 99.9 2.2E-24 7.5E-29 235.6 23.9 325 283-628 249-599 (636)
6 2id5_A Lingo-1, leucine rich r 99.9 4.2E-24 1.5E-28 226.2 24.2 299 281-598 30-331 (477)
7 4ecn_A Leucine-rich repeat pro 99.9 1.8E-24 6.1E-29 240.2 19.1 156 331-489 443-630 (876)
8 4ecn_A Leucine-rich repeat pro 99.9 1.9E-23 6.6E-28 232.0 27.1 327 283-628 491-839 (876)
9 3vq2_A TLR4, TOLL-like recepto 99.9 8.4E-24 2.9E-28 231.1 23.7 130 282-417 31-163 (606)
10 3rgz_A Protein brassinosteroid 99.9 7.1E-25 2.4E-29 245.1 15.0 307 283-598 200-549 (768)
11 3v47_A TOLL-like receptor 5B a 99.9 5.4E-24 1.8E-28 224.1 20.5 310 308-628 30-407 (455)
12 3sfz_A APAF-1, apoptotic pepti 99.9 1.1E-24 3.7E-29 258.4 16.9 224 14-270 218-452 (1249)
13 4fmz_A Internalin; leucine ric 99.9 1.9E-23 6.6E-28 211.5 22.7 303 283-629 44-346 (347)
14 4eco_A Uncharacterized protein 99.9 4.1E-24 1.4E-28 233.4 18.9 325 283-628 206-578 (636)
15 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-24 6.1E-29 215.0 14.2 251 308-602 50-306 (313)
16 3t6q_A CD180 antigen; protein- 99.9 1.6E-23 5.5E-28 228.8 22.8 282 337-627 255-558 (606)
17 4fcg_A Uncharacterized protein 99.9 4.3E-24 1.5E-28 213.5 16.1 222 335-597 80-311 (328)
18 3t6q_A CD180 antigen; protein- 99.9 7.5E-23 2.6E-27 223.5 26.4 308 283-598 129-511 (606)
19 4fcg_A Uncharacterized protein 99.9 9.6E-24 3.3E-28 211.0 16.8 224 306-573 79-311 (328)
20 2z7x_B TOLL-like receptor 1, v 99.9 8.5E-23 2.9E-27 218.7 23.5 129 281-419 19-150 (520)
21 4fmz_A Internalin; leucine ric 99.9 9.8E-23 3.4E-27 206.3 22.2 280 282-598 65-344 (347)
22 2z63_A TOLL-like receptor 4, v 99.9 1.4E-22 4.6E-27 219.9 24.6 170 452-628 345-530 (570)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.9E-22 6.6E-27 217.8 24.4 106 281-394 50-157 (562)
24 3o6n_A APL1; leucine-rich repe 99.9 2.7E-22 9.2E-27 206.4 22.7 283 283-598 45-329 (390)
25 3j0a_A TOLL-like receptor 5; m 99.9 8.1E-22 2.8E-26 222.7 27.9 300 281-598 22-373 (844)
26 2z7x_B TOLL-like receptor 1, v 99.9 2.6E-22 9E-27 214.9 22.5 144 286-442 3-150 (520)
27 3vq2_A TLR4, TOLL-like recepto 99.9 2.6E-22 8.8E-27 219.3 21.3 273 304-600 281-558 (606)
28 1ziw_A TOLL-like receptor 3; i 99.9 9.7E-22 3.3E-26 217.7 26.2 158 280-443 22-184 (680)
29 2z63_A TOLL-like receptor 4, v 99.9 2.4E-22 8.4E-27 217.9 20.7 332 281-628 26-506 (570)
30 1ogq_A PGIP-2, polygalacturona 99.9 1E-22 3.5E-27 202.3 14.8 254 283-580 50-308 (313)
31 3o6n_A APL1; leucine-rich repe 99.9 2.7E-22 9.4E-27 206.3 18.6 282 283-599 69-351 (390)
32 3oja_B Anopheles plasmodium-re 99.9 4.1E-22 1.4E-26 216.4 20.6 150 284-441 52-203 (597)
33 2id5_A Lingo-1, leucine rich r 99.9 9.9E-22 3.4E-26 207.9 22.5 298 308-628 32-332 (477)
34 3bz5_A Internalin-J, INLJ; leu 99.9 2E-21 6.7E-26 203.0 24.1 297 283-628 42-351 (457)
35 1xku_A Decorin; proteoglycan, 99.9 3.1E-21 1.1E-25 193.6 24.1 267 308-626 52-329 (330)
36 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-21 5.9E-26 195.6 21.2 190 285-490 35-229 (332)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.3E-21 7.8E-26 209.4 23.4 289 283-598 76-508 (562)
38 2z81_A CD282 antigen, TOLL-lik 99.9 8.2E-22 2.8E-26 212.6 19.7 177 282-464 25-206 (549)
39 1xku_A Decorin; proteoglycan, 99.9 7.2E-21 2.5E-25 191.0 25.2 269 336-628 31-305 (330)
40 2z81_A CD282 antigen, TOLL-lik 99.9 6.2E-22 2.1E-26 213.6 17.8 130 283-417 50-182 (549)
41 3bz5_A Internalin-J, INLJ; leu 99.9 6.8E-21 2.3E-25 198.9 24.3 279 283-598 64-350 (457)
42 2ft3_A Biglycan; proteoglycan, 99.9 4.5E-21 1.5E-25 192.6 22.1 286 309-627 34-331 (332)
43 1o6v_A Internalin A; bacterial 99.9 7.1E-21 2.4E-25 200.4 24.2 310 283-627 68-386 (466)
44 2z66_A Variable lymphocyte rec 99.9 2.4E-21 8.3E-26 192.2 19.1 224 336-598 28-259 (306)
45 1o6v_A Internalin A; bacterial 99.9 1.4E-20 4.8E-25 198.1 24.7 276 283-598 90-386 (466)
46 1z6t_A APAF-1, apoptotic prote 99.9 4.3E-22 1.5E-26 216.3 13.1 220 13-267 217-449 (591)
47 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-20 4E-25 213.2 25.3 312 306-628 22-374 (844)
48 3oja_B Anopheles plasmodium-re 99.9 3.5E-21 1.2E-25 209.1 20.1 282 283-599 75-357 (597)
49 2z80_A TOLL-like receptor 2, v 99.9 3.5E-21 1.2E-25 195.1 15.9 248 337-598 53-312 (353)
50 3zyi_A Leucine-rich repeat-con 99.9 3.8E-20 1.3E-24 194.0 24.0 221 336-598 75-301 (452)
51 1ziw_A TOLL-like receptor 3; i 99.9 8.1E-20 2.8E-24 202.3 27.3 331 284-628 223-596 (680)
52 3zyj_A Leucine-rich repeat-con 99.8 6.9E-20 2.3E-24 191.4 23.9 221 336-598 64-290 (440)
53 1ozn_A Reticulon 4 receptor; N 99.8 1.1E-19 3.7E-24 178.3 19.3 128 337-464 33-163 (285)
54 4g8a_A TOLL-like receptor 4; l 99.8 3.4E-19 1.2E-23 195.8 24.6 133 280-418 49-184 (635)
55 2z66_A Variable lymphocyte rec 99.8 1.1E-19 3.8E-24 180.2 18.2 243 339-628 10-260 (306)
56 3g06_A SSPH2 (leucine-rich rep 99.8 5.6E-19 1.9E-23 189.9 24.6 255 285-599 42-296 (622)
57 2z80_A TOLL-like receptor 2, v 99.8 4.2E-20 1.5E-24 187.1 14.7 254 308-579 52-317 (353)
58 3o53_A Protein LRIM1, AGAP0063 99.8 9E-20 3.1E-24 181.6 14.4 253 325-603 23-278 (317)
59 1ozn_A Reticulon 4 receptor; N 99.8 7.8E-20 2.7E-24 179.3 13.2 179 307-489 31-212 (285)
60 1wwl_A Monocyte differentiatio 99.8 1.2E-20 4.2E-25 187.4 7.1 243 306-598 41-307 (312)
61 3o53_A Protein LRIM1, AGAP0063 99.8 1.3E-20 4.5E-25 187.6 7.2 270 302-601 28-300 (317)
62 4g8a_A TOLL-like receptor 4; l 99.8 2.1E-18 7.1E-23 189.5 24.5 129 308-442 52-185 (635)
63 3oja_A Leucine-rich immune mol 99.8 1.7E-19 5.7E-24 190.2 14.8 237 333-595 31-270 (487)
64 3zyi_A Leucine-rich repeat-con 99.8 1.3E-18 4.6E-23 182.3 20.0 202 281-489 73-277 (452)
65 3zyj_A Leucine-rich repeat-con 99.8 1.6E-18 5.5E-23 181.0 20.4 203 281-490 62-267 (440)
66 1jl5_A Outer protein YOPM; leu 99.8 8.7E-18 3E-22 175.2 24.3 273 282-598 90-368 (454)
67 1jl5_A Outer protein YOPM; leu 99.8 6.3E-18 2.2E-22 176.3 23.1 262 283-598 131-407 (454)
68 3oja_A Leucine-rich immune mol 99.8 1.6E-19 5.5E-24 190.3 11.0 239 306-574 32-273 (487)
69 1wwl_A Monocyte differentiatio 99.8 6.3E-20 2.2E-24 182.2 7.3 249 333-628 40-308 (312)
70 3g06_A SSPH2 (leucine-rich rep 99.8 8.5E-18 2.9E-22 180.7 23.4 257 308-628 40-296 (622)
71 1p9a_G Platelet glycoprotein I 99.8 6.2E-18 2.1E-22 165.5 18.8 152 333-488 7-158 (290)
72 1z7x_W Ribonuclease inhibitor; 99.8 1.7E-20 5.7E-25 197.7 -0.2 207 282-488 2-237 (461)
73 1p9a_G Platelet glycoprotein I 99.8 1.4E-17 4.7E-22 163.1 18.4 200 355-598 6-206 (290)
74 2z62_A TOLL-like receptor 4, v 99.8 1.2E-17 4.1E-22 162.8 17.0 144 337-481 29-176 (276)
75 2z62_A TOLL-like receptor 4, v 99.8 1.5E-17 5.1E-22 162.1 17.4 219 340-598 11-235 (276)
76 3rfs_A Internalin B, repeat mo 99.7 1.5E-17 5E-22 161.6 16.2 208 334-589 39-248 (272)
77 1z7x_W Ribonuclease inhibitor; 99.7 9.1E-20 3.1E-24 192.1 0.1 307 283-598 56-409 (461)
78 2xwt_C Thyrotropin receptor; s 99.7 7.1E-18 2.4E-22 160.6 13.1 197 360-600 32-239 (239)
79 2o6q_A Variable lymphocyte rec 99.7 7.6E-17 2.6E-21 156.4 20.1 196 337-575 17-217 (270)
80 2ast_B S-phase kinase-associat 99.7 8.5E-19 2.9E-23 176.4 5.8 252 306-606 45-311 (336)
81 2o6q_A Variable lymphocyte rec 99.7 1.1E-16 3.6E-21 155.4 19.9 171 309-488 17-191 (270)
82 3rfs_A Internalin B, repeat mo 99.7 1.6E-17 5.5E-22 161.3 13.3 177 304-489 37-216 (272)
83 2ast_B S-phase kinase-associat 99.7 2.7E-18 9.1E-23 172.8 7.6 251 283-583 47-313 (336)
84 1h6u_A Internalin H; cell adhe 99.7 4.4E-17 1.5E-21 161.1 16.0 144 335-488 40-183 (308)
85 2ca6_A RAN GTPase-activating p 99.7 8.7E-19 3E-23 179.8 3.0 268 300-598 24-341 (386)
86 3ogk_B Coronatine-insensitive 99.7 1.5E-18 5.1E-23 189.0 3.9 314 283-601 164-526 (592)
87 4glp_A Monocyte differentiatio 99.7 8.8E-17 3E-21 159.4 16.2 133 308-441 64-208 (310)
88 1h6u_A Internalin H; cell adhe 99.7 1.1E-16 3.7E-21 158.4 16.2 209 342-580 25-233 (308)
89 2xwt_C Thyrotropin receptor; s 99.7 9.6E-17 3.3E-21 152.7 15.2 198 337-575 32-238 (239)
90 3ogk_B Coronatine-insensitive 99.7 3.3E-18 1.1E-22 186.3 3.5 312 284-598 139-499 (592)
91 2ca6_A RAN GTPase-activating p 99.7 2.9E-18 1E-22 175.9 2.2 238 328-598 24-314 (386)
92 4glp_A Monocyte differentiatio 99.7 1.2E-16 4.1E-21 158.4 12.6 221 337-598 65-305 (310)
93 4ay9_X Follicle-stimulating ho 99.7 6.6E-16 2.3E-20 155.8 17.7 171 311-489 12-188 (350)
94 3goz_A Leucine-rich repeat-con 99.6 1.1E-16 3.8E-21 162.3 6.6 39 536-574 250-295 (362)
95 3m19_A Variable lymphocyte rec 99.6 9.2E-15 3.1E-19 140.0 17.3 149 337-488 15-165 (251)
96 4ay9_X Follicle-stimulating ho 99.6 7E-15 2.4E-19 148.3 17.1 175 308-488 30-212 (350)
97 3goz_A Leucine-rich repeat-con 99.6 1.4E-16 4.6E-21 161.7 3.6 89 305-393 19-119 (362)
98 3m19_A Variable lymphocyte rec 99.6 1.7E-14 5.8E-19 138.2 17.8 175 359-575 14-191 (251)
99 3cvr_A Invasion plasmid antige 99.6 3.1E-15 1.1E-19 158.8 12.8 191 336-582 59-249 (571)
100 2p1m_B Transport inhibitor res 99.6 2.9E-17 9.9E-22 178.9 -4.0 86 512-599 396-493 (594)
101 1h6t_A Internalin B; cell adhe 99.6 7.5E-15 2.6E-19 143.7 13.5 171 305-491 43-213 (291)
102 4ezg_A Putative uncharacterize 99.6 3.1E-15 1.1E-19 137.5 9.7 150 334-489 42-192 (197)
103 2p1m_B Transport inhibitor res 99.6 1.8E-16 6.3E-21 172.5 0.7 302 283-598 105-467 (594)
104 1h6t_A Internalin B; cell adhe 99.6 1.5E-14 5.1E-19 141.6 13.9 145 334-488 44-188 (291)
105 1m9s_A Internalin B; cell inva 99.6 7.9E-15 2.7E-19 157.5 12.7 138 341-488 26-163 (605)
106 2o6s_A Variable lymphocyte rec 99.6 2.2E-14 7.6E-19 133.1 13.4 146 339-488 10-158 (208)
107 1m9s_A Internalin B; cell inva 99.6 1.9E-14 6.5E-19 154.5 13.7 169 305-489 40-208 (605)
108 4ezg_A Putative uncharacterize 99.5 3.5E-14 1.2E-18 130.5 12.6 128 356-488 41-169 (197)
109 3cvr_A Invasion plasmid antige 99.5 5.3E-14 1.8E-18 149.3 15.7 176 360-599 60-242 (571)
110 2v9t_B SLIT homolog 2 protein 99.5 1.2E-13 4.2E-18 129.0 14.4 148 339-489 14-163 (220)
111 1dce_A Protein (RAB geranylger 99.5 2.2E-16 7.4E-21 168.6 -6.0 193 356-593 346-566 (567)
112 2v70_A SLIT-2, SLIT homolog 2 99.5 1.8E-13 6.1E-18 127.9 13.9 147 339-489 14-164 (220)
113 3e6j_A Variable lymphocyte rec 99.5 3E-13 1E-17 127.3 14.0 147 338-489 21-170 (229)
114 1xeu_A Internalin C; cellular 99.5 2.1E-13 7.3E-18 131.1 12.5 146 333-489 38-183 (263)
115 2o6s_A Variable lymphocyte rec 99.5 2.1E-13 7.3E-18 126.4 11.5 158 308-478 28-189 (208)
116 1xeu_A Internalin C; cellular 99.5 1.1E-13 3.8E-18 133.1 9.7 145 334-489 17-161 (263)
117 2v70_A SLIT-2, SLIT homolog 2 99.4 9.6E-13 3.3E-17 122.9 13.0 147 312-466 15-165 (220)
118 2v9t_B SLIT homolog 2 protein 99.4 3.2E-12 1.1E-16 119.3 15.2 148 386-574 14-163 (220)
119 2ell_A Acidic leucine-rich nuc 99.4 5.9E-13 2E-17 118.8 9.8 129 334-465 22-158 (168)
120 4b8c_D Glucose-repressible alc 99.4 1.2E-13 4E-18 152.3 5.6 143 328-472 216-359 (727)
121 2xot_A Amphoterin-induced prot 99.4 1.6E-12 5.5E-17 131.5 13.0 148 337-488 40-199 (361)
122 4b8c_D Glucose-repressible alc 99.4 1.8E-13 6.2E-18 150.8 6.5 151 301-464 217-369 (727)
123 3e6j_A Variable lymphocyte rec 99.4 1.5E-12 5E-17 122.6 11.5 129 336-466 40-171 (229)
124 2xot_A Amphoterin-induced prot 99.4 1.7E-12 5.8E-17 131.3 12.0 152 309-465 40-200 (361)
125 2je0_A Acidic leucine-rich nuc 99.4 8.4E-13 2.9E-17 115.2 7.0 105 335-441 16-124 (149)
126 1w8a_A SLIT protein; signaling 99.3 9.4E-12 3.2E-16 113.5 12.3 126 339-467 11-139 (192)
127 2ell_A Acidic leucine-rich nuc 99.3 2.9E-12 9.7E-17 114.3 8.4 132 356-492 21-161 (168)
128 1a9n_A U2A', U2A'; complex (nu 99.3 3.2E-12 1.1E-16 114.9 7.5 103 334-440 17-123 (176)
129 2je0_A Acidic leucine-rich nuc 99.3 3.8E-12 1.3E-16 111.0 6.8 126 357-486 15-148 (149)
130 2wfh_A SLIT homolog 2 protein 99.3 2.7E-11 9.3E-16 110.3 12.8 123 339-465 13-137 (193)
131 1w8a_A SLIT protein; signaling 99.2 3.4E-11 1.2E-15 109.7 11.3 124 362-489 11-137 (192)
132 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5E-16 110.5 8.2 132 303-442 14-152 (176)
133 2wfh_A SLIT homolog 2 protein 99.2 9.7E-11 3.3E-15 106.6 12.3 123 362-489 13-137 (193)
134 1dce_A Protein (RAB geranylger 99.2 3E-11 1E-15 128.9 10.0 153 328-485 401-567 (567)
135 1ds9_A Outer arm dynein; leuci 99.1 8E-13 2.7E-17 121.4 -4.5 126 354-484 43-180 (198)
136 2o6r_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 101.8 12.5 125 338-467 9-137 (177)
137 1ds9_A Outer arm dynein; leuci 99.1 3.4E-13 1.1E-17 123.9 -7.6 126 331-460 43-180 (198)
138 3sb4_A Hypothetical leucine ri 99.1 5.4E-10 1.8E-14 111.4 14.8 119 307-436 24-154 (329)
139 2o6r_A Variable lymphocyte rec 99.1 1.1E-09 3.6E-14 98.4 12.3 125 360-489 8-135 (177)
140 3sb4_A Hypothetical leucine ri 99.0 2.9E-09 9.9E-14 106.0 13.4 261 307-594 48-328 (329)
141 4fdw_A Leucine rich hypothetic 99.0 4.6E-08 1.6E-12 99.5 21.2 242 332-596 132-379 (401)
142 3g39_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 94.2 10.5 100 338-441 11-113 (170)
143 2r9u_A Variable lymphocyte rec 98.9 3.7E-09 1.3E-13 94.3 10.5 100 339-441 15-116 (174)
144 4fdw_A Leucine rich hypothetic 98.8 1.4E-07 5E-12 95.9 18.4 242 302-573 130-380 (401)
145 3g39_A Variable lymphocyte rec 98.8 1.6E-08 5.5E-13 89.8 9.8 103 360-465 10-113 (170)
146 2r9u_A Variable lymphocyte rec 98.8 1.7E-08 5.7E-13 90.0 9.9 101 361-465 14-116 (174)
147 3un9_A NLR family member X1; l 98.7 4E-09 1.4E-13 106.4 3.9 157 308-465 72-250 (372)
148 2ifg_A High affinity nerve gro 98.6 1.2E-07 4E-12 95.1 10.2 99 341-441 13-114 (347)
149 3un9_A NLR family member X1; l 98.6 1.1E-08 3.8E-13 103.1 1.7 156 335-490 71-251 (372)
150 4fs7_A Uncharacterized protein 98.5 9.6E-06 3.3E-10 82.6 20.0 80 510-596 294-375 (394)
151 2ra8_A Uncharacterized protein 98.4 1.7E-07 5.8E-12 93.6 5.3 61 428-488 250-317 (362)
152 2ifg_A High affinity nerve gro 98.4 7.1E-07 2.4E-11 89.4 9.2 100 363-466 12-115 (347)
153 2ra8_A Uncharacterized protein 98.4 3.4E-07 1.2E-11 91.4 6.4 161 304-466 135-319 (362)
154 4fs7_A Uncharacterized protein 98.2 4.6E-05 1.6E-09 77.5 17.4 164 406-592 229-393 (394)
155 1io0_A Tropomodulin; LRR prote 98.0 3.6E-06 1.2E-10 75.6 5.1 89 302-390 30-128 (185)
156 4gt6_A Cell surface protein; l 98.0 0.00031 1.1E-08 71.3 19.6 108 472-598 259-368 (394)
157 2fna_A Conserved hypothetical 98.0 4.4E-05 1.5E-09 76.5 12.4 214 15-262 123-355 (357)
158 2qen_A Walker-type ATPase; unk 98.0 0.00023 8E-09 70.9 17.5 217 14-262 111-347 (350)
159 1w5s_A Origin recognition comp 97.9 0.0001 3.6E-09 75.4 14.9 206 16-242 122-372 (412)
160 1io0_A Tropomodulin; LRR prote 97.8 1E-05 3.5E-10 72.5 4.5 95 325-419 25-135 (185)
161 4gt6_A Cell surface protein; l 97.8 0.003 1E-07 63.9 23.0 288 302-626 57-367 (394)
162 3e4g_A ATP synthase subunit S, 97.7 1.6E-05 5.3E-10 69.5 3.7 36 359-394 61-96 (176)
163 3e4g_A ATP synthase subunit S, 97.6 3.1E-05 1.1E-09 67.6 4.2 60 337-396 62-127 (176)
164 1njg_A DNA polymerase III subu 97.5 0.00031 1.1E-08 65.8 9.5 107 28-139 124-231 (250)
165 4h09_A Hypothetical leucine ri 97.5 0.013 4.4E-07 58.9 21.4 126 450-595 213-341 (379)
166 3rw6_A Nuclear RNA export fact 97.4 3.8E-05 1.3E-09 72.5 1.3 62 380-442 167-232 (267)
167 3rw6_A Nuclear RNA export fact 97.4 0.00018 6E-09 67.9 5.8 60 333-394 167-231 (267)
168 2v1u_A Cell division control p 97.0 0.041 1.4E-06 55.2 18.9 208 16-242 114-352 (387)
169 2qby_B CDC6 homolog 3, cell di 96.8 0.027 9.1E-07 56.6 16.4 204 16-242 119-340 (384)
170 2chg_A Replication factor C sm 96.8 0.0072 2.5E-07 55.3 10.5 105 29-138 101-206 (226)
171 1hqc_A RUVB; extended AAA-ATPa 96.7 0.01 3.4E-07 58.2 11.8 192 30-240 90-324 (324)
172 1fnn_A CDC6P, cell division co 96.4 0.041 1.4E-06 55.3 14.3 212 16-243 109-353 (389)
173 4h09_A Hypothetical leucine ri 96.0 0.071 2.4E-06 53.4 13.4 58 404-461 260-317 (379)
174 1sxj_B Activator 1 37 kDa subu 96.0 0.029 1E-06 54.7 10.2 104 28-136 105-210 (323)
175 1pgv_A TMD-1, tropomodulin TMD 95.5 0.012 4.2E-07 52.2 4.8 92 302-393 35-136 (197)
176 1iqp_A RFCS; clamp loader, ext 94.2 0.15 5.3E-06 49.6 9.2 106 29-139 109-215 (327)
177 2qby_A CDC6 homolog 1, cell di 93.7 0.3 1E-05 48.7 10.6 207 16-241 112-348 (386)
178 3rfe_A Platelet glycoprotein I 93.2 0.13 4.4E-06 42.3 5.6 51 340-393 12-65 (130)
179 1jr3_A DNA polymerase III subu 93.1 0.39 1.3E-05 47.7 10.1 104 28-136 117-221 (373)
180 1pgv_A TMD-1, tropomodulin TMD 92.9 0.12 4.2E-06 45.7 5.3 111 283-393 41-167 (197)
181 2chq_A Replication factor C sm 91.3 0.73 2.5E-05 44.4 9.3 103 29-136 101-204 (319)
182 3bos_A Putative DNA replicatio 89.5 0.56 1.9E-05 43.0 6.5 101 30-136 104-217 (242)
183 1a5t_A Delta prime, HOLB; zinc 89.0 2 6.8E-05 41.8 10.3 97 29-135 107-204 (334)
184 1sxj_E Activator 1 40 kDa subu 88.7 1.3 4.4E-05 43.5 8.9 103 30-137 134-238 (354)
185 3rfe_A Platelet glycoprotein I 88.0 0.65 2.2E-05 38.0 5.1 34 564-598 32-66 (130)
186 2z4s_A Chromosomal replication 86.2 2.7 9.4E-05 42.6 9.7 103 25-133 189-303 (440)
187 1sxj_D Activator 1 41 kDa subu 82.5 6.8 0.00023 38.1 10.5 103 29-136 132-235 (353)
188 1jr3_D DNA polymerase III, del 81.7 11 0.00038 36.5 11.6 116 14-134 59-183 (343)
189 3pfi_A Holliday junction ATP-d 79.8 19 0.00066 34.6 12.6 105 29-137 105-228 (338)
190 1d2n_A N-ethylmaleimide-sensit 79.0 12 0.00042 34.7 10.5 101 19-127 113-228 (272)
191 3te6_A Regulatory protein SIR3 72.5 38 0.0013 32.3 12.0 135 3-139 100-283 (318)
192 1sxj_A Activator 1 95 kDa subu 72.2 7.8 0.00027 40.2 7.7 101 29-136 147-253 (516)
193 3h4m_A Proteasome-activating n 71.7 6.8 0.00023 36.7 6.7 103 22-128 102-222 (285)
194 3u61_B DNA polymerase accessor 71.6 14 0.00049 35.3 9.1 101 29-133 104-213 (324)
195 2qz4_A Paraplegin; AAA+, SPG7, 70.4 30 0.001 31.5 10.8 107 22-130 90-215 (262)
196 3syl_A Protein CBBX; photosynt 63.3 18 0.00061 34.3 7.8 74 31-105 131-219 (309)
197 1l8q_A Chromosomal replication 62.1 20 0.00068 34.3 7.9 93 31-131 99-203 (324)
198 3uk6_A RUVB-like 2; hexameric 61.3 25 0.00086 34.2 8.7 93 31-133 190-300 (368)
199 1sxj_C Activator 1 40 kDa subu 57.0 42 0.0014 32.2 9.3 100 29-133 109-209 (340)
200 2qp9_X Vacuolar protein sortin 53.4 77 0.0026 30.6 10.5 103 28-134 141-259 (355)
201 3pvs_A Replication-associated 51.2 44 0.0015 33.7 8.5 104 28-135 104-214 (447)
202 3eie_A Vacuolar protein sortin 50.9 75 0.0026 30.1 9.9 103 28-134 108-226 (322)
203 2gno_A DNA polymerase III, gam 48.2 19 0.00064 34.2 4.9 71 29-103 81-152 (305)
204 2zan_A Vacuolar protein sortin 44.5 2E+02 0.0067 28.7 12.2 97 29-129 226-337 (444)
205 3d8b_A Fidgetin-like protein 1 44.2 83 0.0028 30.4 9.1 104 29-136 175-295 (357)
206 1xwi_A SKD1 protein; VPS4B, AA 40.8 2.1E+02 0.007 27.1 11.2 104 28-135 103-222 (322)
207 3n70_A Transport activator; si 39.6 37 0.0013 27.7 4.9 38 32-69 78-115 (145)
208 3vfd_A Spastin; ATPase, microt 38.4 1.8E+02 0.0063 28.2 10.7 72 60-135 252-325 (389)
209 2c9o_A RUVB-like 1; hexameric 34.7 87 0.003 31.5 7.7 91 33-133 298-407 (456)
210 3b9p_A CG5977-PA, isoform A; A 34.5 1.9E+02 0.0064 26.7 9.7 100 28-135 111-232 (297)
211 3cf0_A Transitional endoplasmi 33.4 2.9E+02 0.0098 25.6 10.8 100 28-131 106-223 (301)
212 1ye8_A Protein THEP1, hypothet 32.0 75 0.0026 27.1 5.8 69 27-97 96-170 (178)
213 1jbk_A CLPB protein; beta barr 28.1 19 0.00065 30.8 1.3 66 29-98 114-193 (195)
214 2vda_B Maltoporin; sugar trans 28.0 32 0.0011 18.2 1.5 19 124-142 7-25 (28)
215 2lci_A Protein OR36; structura 27.3 1.3E+02 0.0046 21.9 5.3 58 15-76 10-67 (134)
216 2bjv_A PSP operon transcriptio 25.5 1E+02 0.0034 28.1 5.9 39 31-69 101-150 (265)
217 1ojl_A Transcriptional regulat 25.2 1.9E+02 0.0065 27.0 7.9 65 32-100 98-187 (304)
218 3ec2_A DNA replication protein 24.6 39 0.0013 28.7 2.6 40 30-69 100-142 (180)
219 2kjq_A DNAA-related protein; s 22.7 56 0.0019 26.9 3.1 40 30-69 83-124 (149)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.8e-33 Score=300.93 Aligned_cols=232 Identities=17% Similarity=0.246 Sum_probs=181.8
Q ss_pred cHHHHHHHHHHHcCCc-eEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhhcccCCCCceeCCCCChh
Q 048833 15 NLDQLQKVLRYSLKGK-RYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVASIMGTRGGTTGFNLQGLPFE 93 (629)
Q Consensus 15 ~~~~~~~~l~~~L~~k-~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~~~~l~~L~~~ 93 (629)
+.+.+...+++.|+++ ||||||||||+.++..|.. .+|||||||||++.++..++. ...+|+|++|+.+
T Consensus 227 ~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~~~~--~~~~~~l~~L~~~ 296 (549)
T 2a5y_B 227 TSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAASQ--TCEFIEVTSLEID 296 (549)
T ss_dssp CHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGGCCS--CEEEEECCCCCHH
T ss_pred cHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHHHcCC--CCeEEECCCCCHH
Confidence 3466789999999996 9999999999754333432 279999999999999887642 1267999999999
Q ss_pred hHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCCCCHHHHHHHhhhhccccccccCCcchhhhcc
Q 048833 94 DCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDSTDEHFWEYVRDNEIWQLEQKESGILPALRLS 173 (629)
Q Consensus 94 ~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~s 173 (629)
|||+||++.||.... .+++.+++++|+++|+|+||||+++|+.|+.+ ..+++..+... .+. .....+..++++|
T Consensus 297 ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w~~~~~l~~~-l~~--~~~~~i~~~l~~S 370 (549)
T 2a5y_B 297 ECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQLNNK-LES--RGLVGVECITPYS 370 (549)
T ss_dssp HHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHHHHHH-HHH--HCSSTTCCCSSSS
T ss_pred HHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hHHHHHHhHHH-hhc--ccHHHHHHHHhcc
Confidence 999999999986532 36888999999999999999999999999866 33333222221 111 1356788999999
Q ss_pred cccCChhhhhhhh-----------hhccCCCCceeChHhHHHHHHHc--CCcccCCCCccHHHHHHHHHHHHHhCCceee
Q 048833 174 YDQLPPRLKQCVA-----------YCSIFPKDFKFDSYDLVQFWMAH--GLLQSHNKKEDLEDIGMRYLKELLSRSFFQD 240 (629)
Q Consensus 174 y~~L~~~~k~~fl-----------~~~~fp~~~~~~~~~l~~~wi~e--g~i~~~~~~~~~~~~~~~~l~~L~~r~ll~~ 240 (629)
|++||++.|.||+ |||+||+++.++ ++.|+++ ||+........+++.+. ++.+|+++++++.
T Consensus 371 y~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~ 445 (549)
T 2a5y_B 371 YKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLS 445 (549)
T ss_dssp SSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSE
T ss_pred cccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeE
Confidence 9999999999999 999999999998 8899999 99987654556777777 9999999999997
Q ss_pred cccCCCCceEEEEEeChhHHHHHHHHhccce
Q 048833 241 LTFGMFGLEVLTFKMHDLMHDLAMLVAKDEF 271 (629)
Q Consensus 241 ~~~~~~~~~~~~~~mhd~~~~~~~~~~~~~~ 271 (629)
...+ ...+|+|||+++++++.++.++.
T Consensus 446 ~~~~----~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 446 GKRM----PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp EECS----SSCEEECCHHHHHHHHTTSCTHH
T ss_pred ecCC----CceEEEeChHHHHHHHHHHHHHH
Confidence 6543 34589999999999998887653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=5.1e-26 Score=254.34 Aligned_cols=285 Identities=18% Similarity=0.161 Sum_probs=193.7
Q ss_pred ccccEEEcCCCCcc-ccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEe
Q 048833 336 QFLRVLNLSESSIE-VCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVL 414 (629)
Q Consensus 336 ~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 414 (629)
+.|++|++++|.+. .+|..+.++++|++|++++|.....+|..++++++|+.|++++|.....+|..++.+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 44555555555554 45556666777777777776444466777777777777777777555567777777777777777
Q ss_pred cCcccc-cCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccc
Q 048833 415 TTKQKS-LQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDL 493 (629)
Q Consensus 415 ~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~ 493 (629)
++|.+. ..+..+..+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|.....
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 777766 3455677788888888888876667788888888888888888877778888888888888888888754311
Q ss_pred cccccccC-----------------------------------------------------------CCCCCCCCCCCCc
Q 048833 494 NLNMEIEG-----------------------------------------------------------EGSHHDRKNTRPH 514 (629)
Q Consensus 494 ~~~~~~~~-----------------------------------------------------------~~~~~~~~~~~~~ 514 (629)
........ .+.........+.
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 10000000 0000112233457
Q ss_pred eeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEee
Q 048833 515 LRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTI 594 (629)
Q Consensus 515 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 594 (629)
|+.|+++++.-...+|..+ +.+++|+.|++++|.....+|..++.+++|+.|+|++|.....+|..+..+++|++|++
T Consensus 634 L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp CCEEECCSSCCBSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccEEECcCCcccccCCHHH--hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 8899999876666788777 67899999999999877799999999999999999998777789999999999999998
Q ss_pred eCCCcc-----------------------c----cccCCCCCCCCCcccCCCcee
Q 048833 595 GGCPAL-----------------------S----ERCKPPTGEDWPKISHIPQVY 622 (629)
Q Consensus 595 ~~c~~l-----------------------~----~~~~~~~~~~~~~i~~l~~v~ 622 (629)
++|+-- . ..|....+.+|++|+|.|+++
T Consensus 712 s~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred cCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 876421 1 146667778888888888764
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.93 E-value=1.3e-25 Score=243.16 Aligned_cols=199 Identities=21% Similarity=0.269 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHc---CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhhcccCCCCceeCC----
Q 048833 16 LDQLQKVLRYSL---KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVASIMGTRGGTTGFNLQ---- 88 (629)
Q Consensus 16 ~~~~~~~l~~~L---~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~~~~l~---- 88 (629)
.+++.+.+++.| .+||+||||||||+ .+.|+.+ + +|||||||||++.++..+... ..|+|+
T Consensus 227 leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd~~Va~~l~g~---~vy~LeL~d~ 294 (1221)
T 1vt4_I 227 IHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRFKQVTDFLSAA---TTTHISLDHH 294 (1221)
T ss_dssp HHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSCSHHHHHHHHH---SSCEEEECSS
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccChHHHHhcCCC---eEEEecCccc
Confidence 355666777755 78999999999986 4566543 2 799999999999998765443 467777
Q ss_pred --CCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCCC-CHHHHHHHhhhhccccccccCC
Q 048833 89 --GLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDST-DEHFWEYVRDNEIWQLEQKESG 165 (629)
Q Consensus 89 --~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~-~~~~w~~~~~~~~~~~~~~~~~ 165 (629)
+|+.+|||+||++.. +.. . ..++.++ |+|+||||+++|+.|+.+. ..+.|+.. ....
T Consensus 295 dL~LS~eEA~eLF~~~~-g~~---~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~ 354 (1221)
T 1vt4_I 295 SMTLTPDEVKSLLLKYL-DCR---P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDK 354 (1221)
T ss_dssp SSCCCHHHHHHHHHHHH-CCC---T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHH
T ss_pred cCCcCHHHHHHHHHHHc-CCC---H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhH
Confidence 999999999999984 222 1 1223333 9999999999999999873 66778753 2346
Q ss_pred cchhhhcccccCChhh-hhhhhhhccCCCCceeChHhHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCCceeecccC
Q 048833 166 ILPALRLSYDQLPPRL-KQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFG 244 (629)
Q Consensus 166 ~~~~l~~sy~~L~~~~-k~~fl~~~~fp~~~~~~~~~l~~~wi~eg~i~~~~~~~~~~~~~~~~l~~L~~r~ll~~~~~~ 244 (629)
+..++++||+.||++. |.||++||+||+++.+++..++..|+++| ++.+..++++|+++++++...
T Consensus 355 I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~-- 421 (1221)
T 1vt4_I 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQP-- 421 (1221)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCS--
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeC--
Confidence 7889999999999999 99999999999999999999999998877 134788999999999998731
Q ss_pred CCCceEEEEEeChhHHHHH
Q 048833 245 MFGLEVLTFKMHDLMHDLA 263 (629)
Q Consensus 245 ~~~~~~~~~~mhd~~~~~~ 263 (629)
....++|||++++++
T Consensus 422 ----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 422 ----KESTISIPSIYLELK 436 (1221)
T ss_dssp ----SSSEEBCCCHHHHHH
T ss_pred ----CCCEEEehHHHHHHh
Confidence 234799999998865
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=2.3e-24 Score=226.93 Aligned_cols=299 Identities=17% Similarity=0.138 Sum_probs=215.6
Q ss_pred CCCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccc-ccccCCCC
Q 048833 281 IPKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVC-SRKMGNLK 359 (629)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~ 359 (629)
+++.++.+.+..+.+... .+..+..+++|+.|+++++...... .+..+..+++|++|++++|.+..+ |..+.+++
T Consensus 28 l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEE---CTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceE---CcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 567889999998887664 3567889999999999988664221 123477899999999999999876 66799999
Q ss_pred ccceeecccCCCccccchh--hccCCCccEeccCCccccccCCcc-ccccCcccEEEecCcccccCc-ccC---------
Q 048833 360 HMRYLDLSRNSKIKKLPKS--ICELQSLETLDLAGCLELEELPKD-IKYLVNLRVLVLTTKQKSLQE-SGI--------- 426 (629)
Q Consensus 360 ~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~-~~~--------- 426 (629)
+|++|++++|......|.. ++++++|++|++++|......|.. +..+++|++|++++|.+.... ..+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 9999999998544445554 889999999999998554445665 789999999999998876442 122
Q ss_pred -------------------------CCCCCCCeEeecCCCCcchhhhhCC------------------------------
Q 048833 427 -------------------------RSLGSLRSLKIFGCRDLEHLFEEID------------------------------ 451 (629)
Q Consensus 427 -------------------------~~l~~L~~L~l~~~~~~~~~~~~~~------------------------------ 451 (629)
..+++|+.|++++|......+..+.
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 2346788888888765443333221
Q ss_pred ---------CCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeecc
Q 048833 452 ---------QLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIME 522 (629)
Q Consensus 452 ---------~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 522 (629)
..++|+.|++++|......|..+..+++|++|++++|...... ......+++|+.|++++
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-----------DNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECCS
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-----------hhHhcCcccCCEEECCC
Confidence 1246777777776666666777788888888888877543221 12334566888888887
Q ss_pred ccCcccc-hhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCc-CCCCCCCcCeEeeeCCC
Q 048833 523 ITQLLEL-PQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPE-GMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 523 ~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 598 (629)
+ .+..+ +..+ ..+++|+.|++++|......|..+..+++|++|++++| .++.+|. .+..+++|+.|++++|+
T Consensus 333 N-~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 333 N-FLGSIDSRMF--ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp S-CCCEECGGGG--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-ccCCcChhHh--cCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 6 34444 4444 56788888888888654455777888888888888885 4555554 45788888888888876
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=2.2e-24 Score=235.58 Aligned_cols=325 Identities=12% Similarity=0.126 Sum_probs=245.5
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCC-CCccchHHHHHhhh------cCccccEEEcCCCCcccccc--
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDD-DEKTSQSFVESCIS------KSQFLRVLNLSESSIEVCSR-- 353 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~l~~-- 353 (629)
..++.+.+..+..... ++..+.++++|+.|++++|. +.. ..++..+. .+++|++|++++|.+..+|.
T Consensus 249 ~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~l~~---~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGISG---EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp TTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECTTCTTSCH---HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred CCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECcCCCCCcc---ccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 5678899988876653 56788999999999999886 543 01222233 34899999999999999998
Q ss_pred ccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCc-ccEEEecCcccccCcccCCCCC--
Q 048833 354 KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVN-LRVLVLTTKQKSLQESGIRSLG-- 430 (629)
Q Consensus 354 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~~~~~~~~l~-- 430 (629)
.+.++++|++|++++|.....+| .++.+++|++|++++| .+..+|..+..+++ |++|++++|.+...+..+..++
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccC
Confidence 89999999999999985444899 8999999999999998 56699999999999 9999999999887777676654
Q ss_pred CCCeEeecCCCCcchhhhhCC-------CCCccceEecccCCCCcccccc-ccCCCccceeeccccccccccccccccCC
Q 048833 431 SLRSLKIFGCRDLEHLFEEID-------QLSVLRTLSIESCPRLISLPPA-IKYLSSLENLYLARCESLDLNLNMEIEGE 502 (629)
Q Consensus 431 ~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 502 (629)
+|+.|++++|......|..+. .+++|+.|++++|.. +.+|.. +..+++|++|++++|....++... +.
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~-- 478 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNMLTEIPKNS-LK-- 478 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCCSBCCSSS-SE--
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCCCCcCHHH-hc--
Confidence 899999999987777777787 788999999998764 467765 456899999999998654322100 00
Q ss_pred CCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecc------cCccC
Q 048833 503 GSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIA------RCPKL 576 (629)
Q Consensus 503 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~------~c~~l 576 (629)
........+++|+.|+++++ .+..+|..+....+++|+.|++++|. ++.+|..+..+++|+.|+|+ +|...
T Consensus 479 -~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 479 -DENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp -ETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred -cccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCccc
Confidence 00000112237888998886 55578877632378899999999885 44588888889999999985 45556
Q ss_pred ccCCcCCCCCCCcCeEeeeCCCccccccCCCCCCCCCcccCCCceeeCCccc
Q 048833 577 SSLPEGMHHVTTLKLLTIGGCPALSERCKPPTGEDWPKISHIPQVYLDGEMI 628 (629)
Q Consensus 577 ~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~v~~~~~~~ 628 (629)
..+|..+..+++|+.|++++|.- ...... .. ..+..+.+.++++
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-----~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSNDI-RKVNEK-----IT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCC-CBCCSC-----CC--TTCCEEECCSCTT
T ss_pred ccChHHHhcCCCCCEEECCCCcC-CccCHh-----Hh--CcCCEEECcCCCC
Confidence 67888888889999999998884 332211 11 4677777777654
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=4.2e-24 Score=226.15 Aligned_cols=299 Identities=17% Similarity=0.187 Sum_probs=210.2
Q ss_pred CCCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccc-cCCCC
Q 048833 281 IPKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRK-MGNLK 359 (629)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~ 359 (629)
++..++.+.+..+.+... .+..+..+++|+.|++++|.+..... ..|..+++|++|++++|.+..+|.. +.+++
T Consensus 30 ~~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEP----GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp CCTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeCh----hhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 456777787777776654 23567778888888888776665433 2366778888888888888777764 67788
Q ss_pred ccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcc-cCCCCCCCCeEeec
Q 048833 360 HMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQES-GIRSLGSLRSLKIF 438 (629)
Q Consensus 360 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~ 438 (629)
+|++|++++|......|..+.++++|++|++++|......|..+..+++|+.|++++|.+...+. .+..+++|+.|++.
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 88888888775444556677788888888888775444455677788888888888887765543 46778888888888
Q ss_pred CCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeE
Q 048833 439 GCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRV 518 (629)
Q Consensus 439 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 518 (629)
+|......+..+..+++|+.|++++|.....+|.......+|++|++++|....... .....+++|+.|
T Consensus 185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L 253 (477)
T 2id5_A 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY-----------LAVRHLVYLRFL 253 (477)
T ss_dssp SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH-----------HHHTTCTTCCEE
T ss_pred CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH-----------HHhcCccccCee
Confidence 877555445567778888888888877777777766666688888888775332210 112345678888
Q ss_pred eeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCc-CCCCCCCcCeEeeeCC
Q 048833 519 FIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPE-GMHHVTTLKLLTIGGC 597 (629)
Q Consensus 519 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c 597 (629)
+++++. +..++...+ ..+++|+.|++++|......|..+..+++|+.|+|++| .++.+|. .+..+++|+.|++++|
T Consensus 254 ~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 254 NLSYNP-ISTIEGSML-HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp ECCSSC-CCEECTTSC-TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred ECCCCc-CCccChhhc-cccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 888753 444443322 56778888888888655555777888888888888886 5555554 4577888888888888
Q ss_pred C
Q 048833 598 P 598 (629)
Q Consensus 598 ~ 598 (629)
|
T Consensus 331 ~ 331 (477)
T 2id5_A 331 P 331 (477)
T ss_dssp C
T ss_pred C
Confidence 7
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.8e-24 Score=240.22 Aligned_cols=156 Identities=16% Similarity=0.252 Sum_probs=94.5
Q ss_pred hhhcCccccEEEcCCCCccc------------------cccccC--CCCccceeecccCCCccccchhhccCCCccEecc
Q 048833 331 CISKSQFLRVLNLSESSIEV------------------CSRKMG--NLKHMRYLDLSRNSKIKKLPKSICELQSLETLDL 390 (629)
Q Consensus 331 ~~~~~~~L~~L~l~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 390 (629)
.+..+++|++|+|++|.+.. +|..++ ++++|++|+|++|.....+|..++++++|++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 45566666777776666665 666655 6666777776666555666666666666666666
Q ss_pred CCccccc--cCCccccccC-------cccEEEecCcccccCcc--cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceE
Q 048833 391 AGCLELE--ELPKDIKYLV-------NLRVLVLTTKQKSLQES--GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTL 459 (629)
Q Consensus 391 ~~~~~~~--~lp~~i~~l~-------~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 459 (629)
++|..+. .+|..++.++ +|++|++++|.+...|. .++.+++|+.|++++|... .+| .++.+++|+.|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL 600 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence 6664233 3565555444 66666666666665554 5666666666666666533 455 55666666666
Q ss_pred ecccCCCCccccccccCCCc-cceeeccccc
Q 048833 460 SIESCPRLISLPPAIKYLSS-LENLYLARCE 489 (629)
Q Consensus 460 ~l~~~~~~~~lp~~~~~l~~-L~~L~l~~~~ 489 (629)
++++|... .+|..+..+++ |++|++++|.
T Consensus 601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp ECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred ECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence 66555432 55555555555 6666665554
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.9e-23 Score=231.97 Aligned_cols=327 Identities=12% Similarity=0.110 Sum_probs=243.5
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCC-CCc-cchHHHHH---hhhcCccccEEEcCCCCcccccc--cc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDD-DEK-TSQSFVES---CISKSQFLRVLNLSESSIEVCSR--KM 355 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~-~~~~~~~~---~~~~~~~L~~L~l~~~~~~~l~~--~~ 355 (629)
..++.+.+..+..... ++..+..+++|+.|++++|. +.. .....+.. .+..+++|++|++++|.+..+|. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 5678889988876554 56788999999999999886 553 22221111 23455699999999999999998 89
Q ss_pred CCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCc-ccEEEecCcccccCcccCCCCCC--C
Q 048833 356 GNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVN-LRVLVLTTKQKSLQESGIRSLGS--L 432 (629)
Q Consensus 356 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~~~~~~~~l~~--L 432 (629)
.++++|++|++++|. +..+| .++++++|+.|++++|. +..+|..+..+++ |+.|++++|.+...+..+..++. |
T Consensus 570 ~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp TTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 999999999999884 56888 79999999999999984 5599999999999 99999999998877776666654 9
Q ss_pred CeEeecCCCCcchhh---hhCC--CCCccceEecccCCCCccccccc-cCCCccceeeccccccccccccccccCCCCCC
Q 048833 433 RSLKIFGCRDLEHLF---EEID--QLSVLRTLSIESCPRLISLPPAI-KYLSSLENLYLARCESLDLNLNMEIEGEGSHH 506 (629)
Q Consensus 433 ~~L~l~~~~~~~~~~---~~~~--~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 506 (629)
+.|++++|.....+| ..+. .+++|+.|++++|. +..+|..+ ..+++|+.|++++|....++... .....
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~----~~~~~ 721 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENS----LKPKD 721 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS----SSCTT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHH----hcccc
Confidence 999999998644333 2223 34589999998876 44777665 47899999999998544222100 00000
Q ss_pred CCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeeccc------CccCccCC
Q 048833 507 DRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIAR------CPKLSSLP 580 (629)
Q Consensus 507 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~------c~~l~~lp 580 (629)
.....+++|+.|+++++ .+..+|..+....+++|+.|+|++|. ++.+|..+..+++|+.|+|++ |.....+|
T Consensus 722 ~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp SCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred ccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence 01122348999999886 66688877733478999999999985 556888889999999999976 55567788
Q ss_pred cCCCCCCCcCeEeeeCCCccccccCCCCCCCCCcccCCCceeeCCccc
Q 048833 581 EGMHHVTTLKLLTIGGCPALSERCKPPTGEDWPKISHIPQVYLDGEMI 628 (629)
Q Consensus 581 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~v~~~~~~~ 628 (629)
..+..+++|+.|++++|.- ...... .. .++..+.+.++++
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L-~~Ip~~-----l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDI-RKVDEK-----LT--PQLYILDIADNPN 839 (876)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSC-----CC--SSSCEEECCSCTT
T ss_pred HHHhcCCCCCEEECCCCCC-CccCHh-----hc--CCCCEEECCCCCC
Confidence 8888999999999999974 333221 11 4677777777764
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=8.4e-24 Score=231.05 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=64.7
Q ss_pred CCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccc-ccccCCCCc
Q 048833 282 PKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVC-SRKMGNLKH 360 (629)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~ 360 (629)
+..++.+.+..+..... .+..+.++++|+.|++++|.+...... .|..+++|++|++++|.+..+ |..+.++++
T Consensus 31 ~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHH----HhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 44556666655555433 223455566666666665554433221 244555556666655555544 444555555
Q ss_pred cceeecccCCCccccc-hhhccCCCccEeccCCccccc-cCCccccccCcccEEEecCc
Q 048833 361 MRYLDLSRNSKIKKLP-KSICELQSLETLDLAGCLELE-ELPKDIKYLVNLRVLVLTTK 417 (629)
Q Consensus 361 L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~ 417 (629)
|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++++|
T Consensus 106 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 106 LENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 5555555543 22222 345555555555555543222 34445555555555555444
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=7.1e-25 Score=245.14 Aligned_cols=307 Identities=19% Similarity=0.174 Sum_probs=141.8
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcc-------------
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIE------------- 349 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------- 349 (629)
..++.+.+..+..... .+. +..+++|+.|++++|.+... .+..+..+++|++|++++|.+.
T Consensus 200 ~~L~~L~Ls~n~l~~~-~~~-l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~ 273 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLSGD----FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY 273 (768)
T ss_dssp TTCCEEECCSSCCCSC-CCB-CTTCCSCCEEECCSSCCCSC----HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCE
T ss_pred CcCCEEECcCCcCCCC-Ccc-cccCCCCCEEECcCCcCCCc----ccHHHhcCCCCCEEECCCCcccCccCccccCCCCE
Confidence 3445555554444332 111 44555555555555444322 1222444445555555544443
Q ss_pred ----------ccccccCCC-CccceeecccCCCccccchhhccCCCccEeccCCccccccCCcc-ccccCcccEEEecCc
Q 048833 350 ----------VCSRKMGNL-KHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKD-IKYLVNLRVLVLTTK 417 (629)
Q Consensus 350 ----------~l~~~~~~l-~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~ 417 (629)
.+|..+..+ ++|++|++++|.....+|..++++++|++|++++|...+.+|.. +..+++|++|++++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 334333332 45555555544333344444555555555555554333344433 444555555555554
Q ss_pred ccc-cCcccCCCCC-CCCeEeecCCCCcchhhhhCCC--CCccceEecccCCCCccccccccCCCccceeeccccccccc
Q 048833 418 QKS-LQESGIRSLG-SLRSLKIFGCRDLEHLFEEIDQ--LSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDL 493 (629)
Q Consensus 418 ~~~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~ 493 (629)
.+. ..+..+..++ +|+.|++++|......|..+.. +++|+.|++++|.....+|..+..+++|++|++++|.....
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence 443 2222222232 3444444333322222333332 44455555555444444555555555555555555532211
Q ss_pred cccccccC--------------CCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCC
Q 048833 494 NLNMEIEG--------------EGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSL 559 (629)
Q Consensus 494 ~~~~~~~~--------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~ 559 (629)
... .+.. .+........+++|+.|++.++.-...+|.++ ..+++|+.|++++|.....+|.++
T Consensus 434 ~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 434 IPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp CCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccH-HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCccCCcCChHH
Confidence 000 0000 00001112233456666666554433455544 445666666666665555566666
Q ss_pred CCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCC
Q 048833 560 KDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 560 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 598 (629)
+.+++|++|+|++|.....+|..+..+++|+.|++++|+
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 666666666666655555566666666666666666665
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=5.4e-24 Score=224.10 Aligned_cols=310 Identities=14% Similarity=0.083 Sum_probs=204.4
Q ss_pred CCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcc-cc-ccccCCCCccceeecccCCCccccchhhccCCCc
Q 048833 308 GRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIE-VC-SRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSL 385 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 385 (629)
++++.|++++|.+..... ..+..+++|++|++++|.+. .+ +..+.++++|++|++++|......|..++++++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE----TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp TTCCEEECCSSCCCEECT----TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred CccCEEEecCCccCcCCh----hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 789999999988776533 34788999999999999886 44 4568999999999999986555568889999999
Q ss_pred cEeccCCccccccCCcc--ccccCcccEEEecCcccccCcc-c-CCCCCCCCeEeecCCCCcchhhhhCCCC--CccceE
Q 048833 386 ETLDLAGCLELEELPKD--IKYLVNLRVLVLTTKQKSLQES-G-IRSLGSLRSLKIFGCRDLEHLFEEIDQL--SVLRTL 459 (629)
Q Consensus 386 ~~L~l~~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~~~-~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L 459 (629)
++|++++|......|.. ++.+++|++|++++|.+....+ . +..+++|+.|++++|......+..+..+ .+|+.|
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 99999998554445554 8899999999999999886633 3 7899999999999998655545555443 344444
Q ss_pred ecccCCCCccccc--------cccCCCccceeecccccccc---------------------------ccc---------
Q 048833 460 SIESCPRLISLPP--------AIKYLSSLENLYLARCESLD---------------------------LNL--------- 495 (629)
Q Consensus 460 ~l~~~~~~~~lp~--------~~~~l~~L~~L~l~~~~~l~---------------------------~~~--------- 495 (629)
++++|......+. .+..+++|++|++++|.... ...
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence 4444332111111 11223444444444442110 000
Q ss_pred -------------cccccCC---CCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCC
Q 048833 496 -------------NMEIEGE---GSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSL 559 (629)
Q Consensus 496 -------------~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~ 559 (629)
...+... .........+++|+.|+++++.--...|..+ ..+++|+.|++++|......|..+
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--WGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCEECGGGG
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh--cCcccCCEEECCCCccCCcChhHh
Confidence 0000000 0011223445677777777753332234344 567888888888886544446677
Q ss_pred CCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCccccccCCCCCCCCCcccCCCceeeCCccc
Q 048833 560 KDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPALSERCKPPTGEDWPKISHIPQVYLDGEMI 628 (629)
Q Consensus 560 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~v~~~~~~~ 628 (629)
..+++|++|+|++|......|..+..+++|++|++++|. ++.. ....+....++..+.+.++.+
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~----~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSV----PDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCC----CTTTTTTCTTCCEEECCSSCB
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccC----CHhHhccCCcccEEEccCCCc
Confidence 888888888888875544557778888889999998886 2221 122234566777888888765
No 12
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=1.1e-24 Score=258.41 Aligned_cols=224 Identities=25% Similarity=0.348 Sum_probs=176.9
Q ss_pred CcHHHHHHHHHHHcCCc--eEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhhcccCCCCceeCCC-C
Q 048833 14 SNLDQLQKVLRYSLKGK--RYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVASIMGTRGGTTGFNLQG-L 90 (629)
Q Consensus 14 ~~~~~~~~~l~~~L~~k--~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~~~~l~~-L 90 (629)
.+.+++.+.+++.+.++ ||||||||||+. +.|. ..++|||||||||++.++..+. +....|+++. |
T Consensus 218 ~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~-------~~~~~~~ilvTtR~~~~~~~~~--~~~~~~~~~~~l 286 (1249)
T 3sfz_A 218 LNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLK-------AFDNQCQILLTTRDKSVTDSVM--GPKHVVPVESGL 286 (1249)
T ss_dssp SSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHT-------TTCSSCEEEEEESSTTTTTTCC--SCBCCEECCSSC
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHH-------hhcCCCEEEEEcCCHHHHHhhc--CCceEEEecCCC
Confidence 45688899999999987 999999999853 3332 2368999999999999885432 2237899996 9
Q ss_pred ChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCCCCHHHHHHHhhhhcc----ccc----cc
Q 048833 91 PFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDSTDEHFWEYVRDNEIW----QLE----QK 162 (629)
Q Consensus 91 ~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~~~~~w~~~~~~~~~----~~~----~~ 162 (629)
+++||++||...++... +++.+.+++|+++|+|+||||+++|++|+.+.. .|+.+.+.... .+. ..
T Consensus 287 ~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~--~~~~~l~~l~~~~~~~~~~~~~~~ 360 (1249)
T 3sfz_A 287 GREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN--RWAYYLRQLQNKQFKRIRKSSSYD 360 (1249)
T ss_dssp CHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS--CHHHHHHHHHSCCCCCSSCTTCTT
T ss_pred CHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh--HHHHHHHHHhhhhhhhcccccccc
Confidence 99999999999985432 234457899999999999999999999987652 46554332211 111 11
Q ss_pred cCCcchhhhcccccCChhhhhhhhhhccCCCCceeChHhHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCCceeecc
Q 048833 163 ESGILPALRLSYDQLPPRLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLT 242 (629)
Q Consensus 163 ~~~~~~~l~~sy~~L~~~~k~~fl~~~~fp~~~~~~~~~l~~~wi~eg~i~~~~~~~~~~~~~~~~l~~L~~r~ll~~~~ 242 (629)
...+..++.+||+.|+++.|.||++||+||+++.+++..++..|.++ ++.+..++.+|+++++++...
T Consensus 361 ~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~ 428 (1249)
T 3sfz_A 361 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNR 428 (1249)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEE
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEec
Confidence 13578899999999999999999999999999999999999999654 356889999999999998654
Q ss_pred cCCCCceEEEEEeChhHHHHHHHHhccc
Q 048833 243 FGMFGLEVLTFKMHDLMHDLAMLVAKDE 270 (629)
Q Consensus 243 ~~~~~~~~~~~~mhd~~~~~~~~~~~~~ 270 (629)
. + +...|+||++++++++..+.++
T Consensus 429 ~---~-~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 429 N---G-KSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp S---S-SSEEEECCHHHHHHHHHHTGGG
T ss_pred C---C-CceEEEecHHHHHHHHhhhhHH
Confidence 3 2 4557999999999999887654
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.9e-23 Score=211.49 Aligned_cols=303 Identities=18% Similarity=0.218 Sum_probs=226.0
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMR 362 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 362 (629)
+.++.+.+..+..... ..+..+++|+.|+++++....... +..+++|++|++++|.+..++ .+..+++|+
T Consensus 44 ~~L~~L~l~~~~i~~~---~~~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI---QGIEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113 (347)
T ss_dssp TTCSEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred ccccEEEEeCCccccc---hhhhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCch-HHcCCCcCC
Confidence 4567777777666554 347788999999999887765433 678899999999999988875 588899999
Q ss_pred eeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCC
Q 048833 363 YLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRD 442 (629)
Q Consensus 363 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 442 (629)
+|++++| .+..+|. +..+++|++|++++|.....++ .+..+++|++|++++|.+...+. +..+++|+.|++++|..
T Consensus 114 ~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 114 ELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC
T ss_pred EEECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc
Confidence 9999987 4666666 8889999999999986666655 48899999999999988776644 77889999999998874
Q ss_pred cchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeecc
Q 048833 443 LEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIME 522 (629)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 522 (629)
..++. +..+++|+.|++++|. +..++. +..+++|++|++++|...... ....+++|+.|++++
T Consensus 190 -~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~l~~~~-------------~~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 190 -EDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKITDLS-------------PLANLSQLTWLEIGT 252 (347)
T ss_dssp -CCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG-------------GGTTCTTCCEEECCS
T ss_pred -ccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCccCCCc-------------chhcCCCCCEEECCC
Confidence 34443 7788899999998875 344443 778889999999988543321 134567899999988
Q ss_pred ccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCcccc
Q 048833 523 ITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPALSE 602 (629)
Q Consensus 523 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 602 (629)
+ .+..++. + ..+++|+.|++++|. ++.++ .+..+++|+.|++++|......|..+..+++|+.|++++|+ ++.
T Consensus 253 n-~l~~~~~-~--~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~ 325 (347)
T 4fmz_A 253 N-QISDINA-V--KDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITD 325 (347)
T ss_dssp S-CCCCCGG-G--TTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCC
T ss_pred C-ccCCChh-H--hcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-ccc
Confidence 6 5555542 3 577899999999884 56564 47788999999999986555666667788999999999997 332
Q ss_pred ccCCCCCCCCCcccCCCceeeCCcccC
Q 048833 603 RCKPPTGEDWPKISHIPQVYLDGEMIK 629 (629)
Q Consensus 603 ~~~~~~~~~~~~i~~l~~v~~~~~~~~ 629 (629)
... ...+.++..+.+.++.++
T Consensus 326 ~~~------~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 326 IRP------LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CGG------GGGCTTCSEESSSCC---
T ss_pred ccC------hhhhhccceeehhhhccc
Confidence 211 334566777788887763
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=4.1e-24 Score=233.39 Aligned_cols=325 Identities=14% Similarity=0.102 Sum_probs=255.3
Q ss_pred CcceEEEEEcccCCcc----------------hhhhhcc--CCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcC
Q 048833 283 KSVRHLSFAAANASRN----------------DFSSLLS--DLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLS 344 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~----------------~~~~~~~--~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 344 (629)
..++.+.+..+.+... .++..+. ++++|+.|.+++|....... ..+..+++|++|+++
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP----TFLKALPEMQLINVA 281 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC----TTTTTCSSCCEEECT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh----HHHhcCCCCCEEECc
Confidence 5788999998887662 1567777 99999999999987654433 447889999999999
Q ss_pred CCC-cc--ccccccCCC------CccceeecccCCCccccch--hhccCCCccEeccCCccccccCCccccccCcccEEE
Q 048833 345 ESS-IE--VCSRKMGNL------KHMRYLDLSRNSKIKKLPK--SICELQSLETLDLAGCLELEELPKDIKYLVNLRVLV 413 (629)
Q Consensus 345 ~~~-~~--~l~~~~~~l------~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 413 (629)
+|. +. .+|..++.+ ++|++|++++|. +..+|. .++++++|++|++++|...+.+| .++.+++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 998 87 488887776 999999999984 569998 89999999999999986555899 899999999999
Q ss_pred ecCcccccCcccCCCCCC-CCeEeecCCCCcchhhhhCCCCC--ccceEecccCCCCcccccccc-------CCCcccee
Q 048833 414 LTTKQKSLQESGIRSLGS-LRSLKIFGCRDLEHLFEEIDQLS--VLRTLSIESCPRLISLPPAIK-------YLSSLENL 483 (629)
Q Consensus 414 l~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~lp~~~~-------~l~~L~~L 483 (629)
+++|.+...+..+..+++ |+.|++++|... .+|..+..++ +|+.|++++|......|..+. .+++|++|
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 999999988888999999 999999999854 7888777655 899999999988888888787 78899999
Q ss_pred eccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCC------CCCccEEEecCCCCCccCCc
Q 048833 484 YLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGS------TDTLRDLFIVSCPNFMALPR 557 (629)
Q Consensus 484 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~------~~~L~~L~l~~~~~~~~l~~ 557 (629)
++++|....++. .....+++|+.|+++++ .+..+|...+... +++|+.|++++|. ++.+|.
T Consensus 439 ~Ls~N~l~~lp~-----------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~ 505 (636)
T 4eco_A 439 NLSNNQISKFPK-----------ELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSD 505 (636)
T ss_dssp ECCSSCCCSCCT-----------HHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCG
T ss_pred ECcCCccCcCCH-----------HHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccCh
Confidence 999986443221 01123568999999986 4557776553322 2389999999985 668998
Q ss_pred CCC--CCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCccccc-cCCCCCCCCCcccCCCceeeCCccc
Q 048833 558 SLK--DLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPALSER-CKPPTGEDWPKISHIPQVYLDGEMI 628 (629)
Q Consensus 558 ~~~--~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~i~~l~~v~~~~~~~ 628 (629)
.+. .+++|+.|+|++| .++.+|..+..+++|+.|++++|+.+..- ........+..+.++..+.+.++.+
T Consensus 506 ~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp GGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 887 9999999999997 45559999999999999999876533211 1111122334456677777777664
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.8e-24 Score=215.02 Aligned_cols=251 Identities=17% Similarity=0.179 Sum_probs=195.0
Q ss_pred CCceEEEEecCCCCc--cchHHHHHhhhcCccccEEEcCC-CCcc-ccccccCCCCccceeecccCCCccccchhhccCC
Q 048833 308 GRVRTICFSTDDDEK--TSQSFVESCISKSQFLRVLNLSE-SSIE-VCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ 383 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 383 (629)
.+++.|+++++.+.. ... ..+..+++|++|++++ +.+. .+|..+.++++|++|++++|.....+|..+.+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~----~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP----SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC----GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccC----hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 567888888877654 222 2467788888888884 7766 6777788888888888888754447888888888
Q ss_pred CccEeccCCccccccCCccccccCcccEEEecCcccc-cCcccCCCCC-CCCeEeecCCCCcchhhhhCCCCCccceEec
Q 048833 384 SLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKS-LQESGIRSLG-SLRSLKIFGCRDLEHLFEEIDQLSVLRTLSI 461 (629)
Q Consensus 384 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 461 (629)
+|++|++++|.....+|..++.+++|++|++++|.+. ..+..+..++ +|+.|++++|......|..+..++ |+.|++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 8888888887555578888888888888888888876 5566777777 888888888876656777777776 888888
Q ss_pred ccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCc
Q 048833 462 ESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTL 541 (629)
Q Consensus 462 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 541 (629)
++|......|..+..+++|+.|++++|... ..+..+ ..+++|
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------------------~~~~~~--~~l~~L 246 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLA------------------------------------FDLGKV--GLSKNL 246 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEEC------------------------------------CBGGGC--CCCTTC
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCcee------------------------------------eecCcc--cccCCC
Confidence 887766677777888888888888877421 111112 456889
Q ss_pred cEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCcccc
Q 048833 542 RDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPALSE 602 (629)
Q Consensus 542 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 602 (629)
++|++++|.....+|..+..+++|++|++++|.....+|.. ..+++|+.+++++|+.+..
T Consensus 247 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 99999999766688999999999999999998766688875 7899999999999996653
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.6e-23 Score=228.82 Aligned_cols=282 Identities=17% Similarity=0.121 Sum_probs=131.8
Q ss_pred cccEEEcCCCCccccccc-cCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEec
Q 048833 337 FLRVLNLSESSIEVCSRK-MGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLT 415 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~ 415 (629)
.|+.|+++++.+..++.. +..+++|++|++++| .+..+|..+.++++|++|++++|......|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 344555555555444433 455555555555554 344555555555555555555553333334445555555555555
Q ss_pred Cccccc--CcccCCCCCCCCeEeecCCCCcchh--hhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccc
Q 048833 416 TKQKSL--QESGIRSLGSLRSLKIFGCRDLEHL--FEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESL 491 (629)
Q Consensus 416 ~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l 491 (629)
+|.+.. ....+..+++|+.|++++|...... +..+..+++|++|++++|......|..+..+++|++|++++|...
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 554431 1223455555555555555432222 334555555555555554433334444555555555555554322
Q ss_pred ccccccccc-----------C---CCCCCCCCCCCCceeeEeeccccCccc-ch--hhhhcCCCCCccEEEecCCCCCcc
Q 048833 492 DLNLNMEIE-----------G---EGSHHDRKNTRPHLRRVFIMEITQLLE-LP--QWLLQGSTDTLRDLFIVSCPNFMA 554 (629)
Q Consensus 492 ~~~~~~~~~-----------~---~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~--~~~~~~~~~~L~~L~l~~~~~~~~ 554 (629)
.......+. . ..........+++|+.|+++++.-... ++ ..+ ..+++|+.|++++|.....
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL--QTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG--GGCTTCCEEECTTSCCCEE
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh--ccCCCccEEECCCCccCcc
Confidence 110000000 0 000111223345566666655432110 11 112 3455666666666644434
Q ss_pred CCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCccccccCCCCCCCCCcccCCCceeeCCcc
Q 048833 555 LPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPALSERCKPPTGEDWPKISHIPQVYLDGEM 627 (629)
Q Consensus 555 l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~v~~~~~~ 627 (629)
.|..+..+++|++|++++|......|..+..++.| .|++++|.-. . .....+..+.++..+.+.+++
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~-~----~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS-I----ILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC-C----CCGGGHHHHHTSSEEECTTCC
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc-c----cCHhhcccCCCCCEEeCCCCC
Confidence 45556666666666666654444455555566666 6666666411 1 111112234555666666654
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=4.3e-24 Score=213.55 Aligned_cols=222 Identities=27% Similarity=0.409 Sum_probs=152.6
Q ss_pred CccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEe
Q 048833 335 SQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVL 414 (629)
Q Consensus 335 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 414 (629)
...++.|+++++.+..+|..+.++++|++|++++| .+..+|..++++++|++|++++| .+..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 35566666666666666666666777777777665 34466666667777777777665 34466666667777777777
Q ss_pred cCcccc-cCcccC---------CCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceee
Q 048833 415 TTKQKS-LQESGI---------RSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLY 484 (629)
Q Consensus 415 ~~~~~~-~~~~~~---------~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 484 (629)
++|... ..+..+ ..+++|+.|++++|. +..+|..++.+++|++|++++|. +..+|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEE
Confidence 665432 223222 237777777777765 33666777777777777777765 445666677777777777
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCC
Q 048833 485 LARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEA 564 (629)
Q Consensus 485 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~ 564 (629)
+++|... ..+|..+ ..+++|+.|++++|...+.+|..+..+++
T Consensus 236 Ls~n~~~-----------------------------------~~~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 236 LRGCTAL-----------------------------------RNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp CTTCTTC-----------------------------------CBCCCCT--TCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred CcCCcch-----------------------------------hhhHHHh--cCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 7776432 2233333 45678888888888888888888888888
Q ss_pred cCeeecccCccCccCCcCCCCCCCcCeEeeeCC
Q 048833 565 LETLVIARCPKLSSLPEGMHHVTTLKLLTIGGC 597 (629)
Q Consensus 565 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 597 (629)
|++|+|++|+.++.+|..+..+++|+.+.+..+
T Consensus 279 L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 888888888888888888888888888877643
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=7.5e-23 Score=223.52 Aligned_cols=308 Identities=19% Similarity=0.172 Sum_probs=206.0
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCcccc--EEEcCCCCccccccccCCCC-
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLR--VLNLSESSIEVCSRKMGNLK- 359 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~l~~~~~~l~- 359 (629)
..++.+.+..+.......+... .+++|+.|++++|........ .+..++.|+ .|++++|.+..++.......
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~ 203 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKE----DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHH----HHHTTTTCCSEEEECTTCCCCEECTTTTTTCE
T ss_pred CcccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChh----hhhhhcccceeEEecCCCccCccChhHhhhcc
Confidence 4577777777766654333333 378888888888776655443 355677777 78888887765554322222
Q ss_pred ---------------------------------------------------ccceeecccCCCccccchhhccCCCccEe
Q 048833 360 ---------------------------------------------------HMRYLDLSRNSKIKKLPKSICELQSLETL 388 (629)
Q Consensus 360 ---------------------------------------------------~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 388 (629)
+|+.|++++|......+..++.+++|++|
T Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 283 (606)
T 3t6q_A 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283 (606)
T ss_dssp EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEE
T ss_pred ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEE
Confidence 56777777764333344558999999999
Q ss_pred ccCCccccccCCccccccCcccEEEecCcccccC-cccCCCCCCCCeEeecCCCCcchhhh-hCCCCCccceEecccCCC
Q 048833 389 DLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQ-ESGIRSLGSLRSLKIFGCRDLEHLFE-EIDQLSVLRTLSIESCPR 466 (629)
Q Consensus 389 ~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~ 466 (629)
++++| .+..+|..+..+++|++|++++|.+... +..+..+++|+.|++++|.....++. .+..+++|+.|++++|..
T Consensus 284 ~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 284 DLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp ECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred eccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 99998 6779999999999999999999988765 45788999999999999986645544 488999999999999875
Q ss_pred Cccc--cccccCCCccceeeccccccccccccc----------cccCCC---C-CCCCCCCCCceeeEeeccccCcccch
Q 048833 467 LISL--PPAIKYLSSLENLYLARCESLDLNLNM----------EIEGEG---S-HHDRKNTRPHLRRVFIMEITQLLELP 530 (629)
Q Consensus 467 ~~~l--p~~~~~l~~L~~L~l~~~~~l~~~~~~----------~~~~~~---~-~~~~~~~~~~L~~L~l~~~~~l~~~~ 530 (629)
.... |..+..+++|++|++++|......... .+.... . ........++|+.|+++++.-....|
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence 4443 677899999999999998643321100 000000 0 01112334566666666653333333
Q ss_pred hhhhcCCCCCccEEEecCCCCCcc---CCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCC
Q 048833 531 QWLLQGSTDTLRDLFIVSCPNFMA---LPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 531 ~~~~~~~~~~L~~L~l~~~~~~~~---l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 598 (629)
..+ ..+++|+.|++++|..... .+..+..+++|++|++++|......|..+..+++|+.|++++|.
T Consensus 443 ~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 443 QLF--DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp TTT--TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred HHH--hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 333 4566777777777653321 12345667777777777765444456667777777777777775
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=9.6e-24 Score=211.00 Aligned_cols=224 Identities=25% Similarity=0.355 Sum_probs=194.5
Q ss_pred CCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCc
Q 048833 306 DLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSL 385 (629)
Q Consensus 306 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 385 (629)
..++++.|+++++.+...+.. +..+++|++|++++|.+..+|..+..+++|++|++++| .+..+|..++++++|
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~-----l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQ-----AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRL 152 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSC-----GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTC
T ss_pred cccceeEEEccCCCchhcChh-----hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCC
Confidence 346788899998887754432 55688999999999999999999999999999999988 566899999999999
Q ss_pred cEeccCCccccccCCccccc---------cCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCcc
Q 048833 386 ETLDLAGCLELEELPKDIKY---------LVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVL 456 (629)
Q Consensus 386 ~~L~l~~~~~~~~lp~~i~~---------l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 456 (629)
++|++++|...+.+|..+.. +++|++|++++|.+...+..+..+++|+.|++++|.. ..+|..++.+++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~~l~~L 231 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKL 231 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC-CCCCGGGGGCTTC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC-CcCchhhccCCCC
Confidence 99999998888899987765 9999999999999987788899999999999999874 4677789999999
Q ss_pred ceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcC
Q 048833 457 RTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQG 536 (629)
Q Consensus 457 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 536 (629)
+.|++++|...+.+|..+..+++|++|++++|... ..+|.++ .
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-----------------------------------~~~p~~~--~ 274 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL-----------------------------------LTLPLDI--H 274 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC-----------------------------------CBCCTTG--G
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch-----------------------------------hhcchhh--h
Confidence 99999999999999999999999999999987532 2344444 5
Q ss_pred CCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccC
Q 048833 537 STDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARC 573 (629)
Q Consensus 537 ~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c 573 (629)
.+++|+.|++++|...+.+|.+++.+++|+.+.+..+
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 6789999999999999999999999999999999873
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=8.5e-23 Score=218.70 Aligned_cols=129 Identities=20% Similarity=0.217 Sum_probs=95.3
Q ss_pred CCCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCc
Q 048833 281 IPKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKH 360 (629)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~ 360 (629)
+++.++.+.+..+.+... .+..+..+++|+.|++++|.+..... ..+..+++|++|++++|.+..+|.. .+++
T Consensus 19 ~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 19 LSQKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDI----SVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp CCTTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEG----GGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred ccccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcCh----HHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 346788898888877654 34567889999999999988776543 3477889999999999999988877 7899
Q ss_pred cceeecccCCCcc-ccchhhccCCCccEeccCCccccccCCccccccCcc--cEEEecCccc
Q 048833 361 MRYLDLSRNSKIK-KLPKSICELQSLETLDLAGCLELEELPKDIKYLVNL--RVLVLTTKQK 419 (629)
Q Consensus 361 L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L--~~L~l~~~~~ 419 (629)
|++|++++|.... .+|..++++++|++|++++|. +.. ..+..+++| +.|++++|.+
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccc
Confidence 9999999885433 467889999999999998874 322 234444444 5555555443
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=9.8e-23 Score=206.26 Aligned_cols=280 Identities=19% Similarity=0.252 Sum_probs=228.5
Q ss_pred CCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCcc
Q 048833 282 PKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHM 361 (629)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L 361 (629)
.+.++.+.+..+.+.... .+..+++|+.|.+++|...... .+..+++|++|++++|.+..++. +..+++|
T Consensus 65 ~~~L~~L~l~~n~i~~~~---~~~~l~~L~~L~L~~n~i~~~~------~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L 134 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKITDIS------ALQNLTNLRELYLNEDNISDISP-LANLTKM 134 (347)
T ss_dssp CTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG------GGTTCTTCSEEECTTSCCCCCGG-GTTCTTC
T ss_pred cCCccEEEccCCccccch---hhhcCCcCCEEEccCCcccCch------HHcCCCcCCEEECcCCcccCchh-hccCCce
Confidence 357889999888776652 2889999999999998877642 37899999999999999998876 8899999
Q ss_pred ceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCC
Q 048833 362 RYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 362 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 441 (629)
++|++++|.....++. +..+++|++|++++| .+..++. +..+++|+.|++++|.+...+. +..+++|+.|++++|.
T Consensus 135 ~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred eEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCC
Confidence 9999999976666655 899999999999997 4556654 8899999999999998877654 8889999999999987
Q ss_pred CcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeec
Q 048833 442 DLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIM 521 (629)
Q Consensus 442 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 521 (629)
... .+. +..+++|++|++++|. ++.++. +..+++|++|++++|..... .....+++|+.|+++
T Consensus 211 l~~-~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 211 ITD-ITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQISDI-------------NAVKDLTKLKMLNVG 273 (347)
T ss_dssp CCC-CGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCC-------------GGGTTCTTCCEEECC
T ss_pred CCC-Cch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccCCC-------------hhHhcCCCcCEEEcc
Confidence 543 333 7889999999999876 455555 88999999999999854332 123456799999999
Q ss_pred cccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCC
Q 048833 522 EITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 522 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 598 (629)
++ .+..++. + ..+++|+.|++++|......|..+..+++|++|++++|+ ++.++. +..+++|++|++++|+
T Consensus 274 ~n-~l~~~~~-~--~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 274 SN-QISDISV-L--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp SS-CCCCCGG-G--GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred CC-ccCCChh-h--cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 87 5666653 3 568999999999997666667778899999999999986 555554 7789999999999997
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.4e-22 Score=219.89 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=103.2
Q ss_pred CCCccceEecccCCCCcc--ccccccCCCccceeeccccccccccccc---------cccCC---C-CCCCCCCCCCcee
Q 048833 452 QLSVLRTLSIESCPRLIS--LPPAIKYLSSLENLYLARCESLDLNLNM---------EIEGE---G-SHHDRKNTRPHLR 516 (629)
Q Consensus 452 ~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~---------~~~~~---~-~~~~~~~~~~~L~ 516 (629)
.+++|+.|++++|..... .|..+..+++|++|++++|......... .+... . ........+++|+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 455666666665542221 1445556666666666665432211000 00000 0 0112334566888
Q ss_pred eEeeccccCcccchhhhhcCCCCCccEEEecCCCCC-ccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeee
Q 048833 517 RVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNF-MALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIG 595 (629)
Q Consensus 517 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 595 (629)
.|+++++.-....|..+ ..+++|+.|++++|... ..+|..+..+++|++|++++|......|..+..+++|++|+++
T Consensus 425 ~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp EEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEeCcCCcccccchhhh--hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 88888875444455554 56788888888888644 3578888888899999998876555557788888889999998
Q ss_pred CCCccccccCCCCCCCCCcccCCCceeeCCccc
Q 048833 596 GCPALSERCKPPTGEDWPKISHIPQVYLDGEMI 628 (629)
Q Consensus 596 ~c~~l~~~~~~~~~~~~~~i~~l~~v~~~~~~~ 628 (629)
+|. ++.. ....+....++..+.+.++.+
T Consensus 503 ~n~-l~~~----~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 503 SNQ-LKSV----PDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp SSC-CSCC----CTTTTTTCTTCCEEECCSSCB
T ss_pred CCc-CCCC----CHHHhhcccCCcEEEecCCcc
Confidence 885 3322 122344556677778877764
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.9e-22 Score=217.78 Aligned_cols=106 Identities=24% Similarity=0.226 Sum_probs=82.7
Q ss_pred CCCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCc
Q 048833 281 IPKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKH 360 (629)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~ 360 (629)
+++.++.+.+..+.+... .+..+..+++|+.|++++|.+..... ..|..+++|++|++++|.+..+|.. .+++
T Consensus 50 ~~~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 50 LPPRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDF----HVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp SCTTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECT----TTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred CCCCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCH----HHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 346788888888877654 24577888999999999887776543 3367888899999999999888876 7889
Q ss_pred cceeecccCCCcccc--chhhccCCCccEeccCCcc
Q 048833 361 MRYLDLSRNSKIKKL--PKSICELQSLETLDLAGCL 394 (629)
Q Consensus 361 L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~ 394 (629)
|++|++++|. +..+ |..++++++|++|++++|.
T Consensus 123 L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 123 LRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCEEECCCCC-ccccCchHhhcccCcccEEecCCCc
Confidence 9999998874 5443 4778888999999888874
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.7e-22 Score=206.37 Aligned_cols=283 Identities=14% Similarity=0.101 Sum_probs=145.6
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccccc-ccCCCCcc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSR-KMGNLKHM 361 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L 361 (629)
..++.+.+..+.+... ....+..+++|+.|+++++........ .+..+++|++|++++|.+..++. .+.++++|
T Consensus 45 ~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEecCCchhhC-ChhHhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 4556666666554443 123355667777777776665543322 25566777777777777766544 35667777
Q ss_pred ceeecccCCCccccchh-hccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCC
Q 048833 362 RYLDLSRNSKIKKLPKS-ICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGC 440 (629)
Q Consensus 362 ~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 440 (629)
++|++++| .+..+|.. ++++++|++|++++|......|..+..+++|++|++++|.+... .+..+++|+.|++++|
T Consensus 120 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 120 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN 196 (390)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSS
T ss_pred CEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccc
Confidence 77777766 45555554 46677777777777643333344566777777777777665543 2344555555555554
Q ss_pred CCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEee
Q 048833 441 RDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFI 520 (629)
Q Consensus 441 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 520 (629)
... .+...++|+.|++++|. +..+|.. ..++|+.|++++|..... ......++|+.|++
T Consensus 197 ~l~-----~~~~~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 197 LLS-----TLAIPIAVEELDASHNS-INVVRGP--VNVELTILKLQHNNLTDT-------------AWLLNYPGLVEVDL 255 (390)
T ss_dssp CCS-----EEECCSSCSEEECCSSC-CCEEECC--CCSSCCEEECCSSCCCCC-------------GGGGGCTTCSEEEC
T ss_pred ccc-----ccCCCCcceEEECCCCe-eeecccc--ccccccEEECCCCCCccc-------------HHHcCCCCccEEEC
Confidence 321 11222344444444432 2222221 124455555554432211 11122345555555
Q ss_pred ccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCC
Q 048833 521 MEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 521 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 598 (629)
+++.--...|..+ ..+++|+.|++++|. ++.+|..+..+++|++|++++| .+..+|..+..+++|+.|++++|+
T Consensus 256 s~n~l~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 256 SYNELEKIMYHPF--VKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CSSCCCEEESGGG--TTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCCcCCCcChhHc--cccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc
Confidence 5542222223333 344555555555542 3444444445555555555554 344444444445555555555554
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=8.1e-22 Score=222.72 Aligned_cols=300 Identities=14% Similarity=0.086 Sum_probs=196.0
Q ss_pred CCCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccc-ccccCCCC
Q 048833 281 IPKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVC-SRKMGNLK 359 (629)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~ 359 (629)
+|+.++.+.+..+.+... .+..+..+++|+.|++++|...... .+..|..+++|++|++++|.+..+ |..+.+++
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i---~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTI---DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEE---CTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCcccc---CHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 567788888887776654 3456778888888888876432211 123467788888888888888765 66788888
Q ss_pred ccceeecccCCCccccchh--hccCCCccEeccCCccccccCC-ccccccCcccEEEecCcccccC-cccCCCC--CCCC
Q 048833 360 HMRYLDLSRNSKIKKLPKS--ICELQSLETLDLAGCLELEELP-KDIKYLVNLRVLVLTTKQKSLQ-ESGIRSL--GSLR 433 (629)
Q Consensus 360 ~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l--~~L~ 433 (629)
+|++|+|++|.....+|.. ++++++|++|++++|......| ..++++++|++|++++|.+... +..+..+ ++|+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 8888888887544445554 7788888888888874433323 4678888888888888876543 3344444 6788
Q ss_pred eEeecCCCCcchhhhhCCCCCc------cceEecccCCCCccccccccC-------------------------------
Q 048833 434 SLKIFGCRDLEHLFEEIDQLSV------LRTLSIESCPRLISLPPAIKY------------------------------- 476 (629)
Q Consensus 434 ~L~l~~~~~~~~~~~~~~~l~~------L~~L~l~~~~~~~~lp~~~~~------------------------------- 476 (629)
.|++++|......+..++.+++ |+.|++++|......|..+..
T Consensus 178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~ 257 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257 (844)
T ss_dssp CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence 8888877765555555555554 888888777543333322211
Q ss_pred -------CCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCC
Q 048833 477 -------LSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSC 549 (629)
Q Consensus 477 -------l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 549 (629)
.++|+.|++++|..... ........++|+.|++.++.--...+..+ ..+++|+.|++++|
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGFVFSL-----------NSRVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYN 324 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCCCCEE-----------CSCCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESC
T ss_pred hhhhccccCCccEEECCCCccccc-----------ChhhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCC
Confidence 13455555555432211 12223445678888887753322223333 56778888888887
Q ss_pred CCCccCCcCCCCCCCcCeeecccCccCccCC-cCCCCCCCcCeEeeeCCC
Q 048833 550 PNFMALPRSLKDLEALETLVIARCPKLSSLP-EGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 550 ~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~ 598 (629)
......|..+..+++|+.|++++|. +..++ ..+..+++|+.|++++|.
T Consensus 325 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 325 LLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCC
Confidence 6544556778888888888888864 44444 457778888888888876
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.6e-22 Score=214.87 Aligned_cols=144 Identities=20% Similarity=0.159 Sum_probs=114.9
Q ss_pred eEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccc-ccccCCCCcccee
Q 048833 286 RHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVC-SRKMGNLKHMRYL 364 (629)
Q Consensus 286 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L 364 (629)
+.+.+..+.... ++..+. ++++.|++++|........ .+..+++|++|++++|.+..+ |..+.++++|++|
T Consensus 3 ~~l~ls~n~l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIH--VPKDLS--QKTTILNISQNYISELWTS----DILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSS--CCCSCC--TTCSEEECCSSCCCCCCHH----HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred ceEecCCCCccc--cccccc--ccccEEECCCCcccccChh----hccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 345555555553 333333 8999999999988765543 478899999999999999977 6679999999999
Q ss_pred ecccCCCccccchhhccCCCccEeccCCccccc-cCCccccccCcccEEEecCcccccCcccCCCCCCC--CeEeecCCC
Q 048833 365 DLSRNSKIKKLPKSICELQSLETLDLAGCLELE-ELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSL--RSLKIFGCR 441 (629)
Q Consensus 365 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~ 441 (629)
++++| .+..+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.+.. ..+..+++| +.|++++|.
T Consensus 75 ~Ls~N-~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 75 DLSHN-KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp ECCSS-CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT
T ss_pred ecCCC-ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccc
Confidence 99998 57788886 89999999999985444 478899999999999999998765 346667777 888888876
Q ss_pred C
Q 048833 442 D 442 (629)
Q Consensus 442 ~ 442 (629)
.
T Consensus 150 l 150 (520)
T 2z7x_B 150 T 150 (520)
T ss_dssp T
T ss_pred c
Confidence 5
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=2.6e-22 Score=219.27 Aligned_cols=273 Identities=15% Similarity=0.072 Sum_probs=226.6
Q ss_pred ccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCC
Q 048833 304 LSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ 383 (629)
Q Consensus 304 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 383 (629)
+..+++|+.|.++++...... .+..++.|+.|++++|.+..+| .+ .+++|++|++++|...... .+..++
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~------~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~ 350 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE------DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALP 350 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC------CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCT
T ss_pred cccCCCCCEEEecCccchhhh------hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCC
Confidence 778899999999998876654 3778899999999999999888 55 9999999999998655544 467999
Q ss_pred CccEeccCCcccccc---CCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhh-hhCCCCCccceE
Q 048833 384 SLETLDLAGCLELEE---LPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLF-EEIDQLSVLRTL 459 (629)
Q Consensus 384 ~L~~L~l~~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L 459 (629)
+|++|++++|. +.. +|..+..+++|++|++++|.+...+..+..+++|+.|++++|......+ ..+..+++|+.|
T Consensus 351 ~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 99999999984 443 3778899999999999999988877889999999999999998655555 578899999999
Q ss_pred ecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCC
Q 048833 460 SIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTD 539 (629)
Q Consensus 460 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 539 (629)
++++|......|..+..+++|++|++++|...... .......+++|+.|+++++.-....|.++ ..++
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~ 497 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT----------LSNVFANTTNLTFLDLSKCQLEQISWGVF--DTLH 497 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE----------ECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCT
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc----------hHHhhccCCCCCEEECCCCcCCccChhhh--cccc
Confidence 99999877778888999999999999998643211 12234566799999999984444445555 6789
Q ss_pred CccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCC-CcCeEeeeCCCcc
Q 048833 540 TLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVT-TLKLLTIGGCPAL 600 (629)
Q Consensus 540 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~c~~l 600 (629)
+|+.|++++|......|..+..+++|+.|+|++| .++.+|..+..++ +|+.|++++||-.
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCcc
Confidence 9999999999766666889999999999999997 5778998888887 5999999998843
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=9.7e-22 Score=217.67 Aligned_cols=158 Identities=20% Similarity=0.209 Sum_probs=124.5
Q ss_pred CCCCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccccc-ccCCC
Q 048833 280 SIPKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSR-KMGNL 358 (629)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l 358 (629)
.++..++.+.+..+.+... .+..+..+++|++|++++|........ .+..+++|++|++++|.+..+|. .+.++
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp CSCTTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCCCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccChhhhccC
Confidence 3457889999988877664 345688899999999999887765443 36788999999999999998887 48999
Q ss_pred CccceeecccCCCcccc-chhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcc-c--CCCCCCCCe
Q 048833 359 KHMRYLDLSRNSKIKKL-PKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQES-G--IRSLGSLRS 434 (629)
Q Consensus 359 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~--~~~l~~L~~ 434 (629)
++|++|++++|. +..+ |..++++++|++|++++|......|..++.+++|++|++++|.+...+. . ...+++|+.
T Consensus 97 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 97 TNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp TTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 999999999885 4555 4678999999999999986655667778899999999999987765432 1 234577888
Q ss_pred EeecCCCCc
Q 048833 435 LKIFGCRDL 443 (629)
Q Consensus 435 L~l~~~~~~ 443 (629)
|++++|...
T Consensus 176 L~L~~n~l~ 184 (680)
T 1ziw_A 176 LELSSNQIK 184 (680)
T ss_dssp EECTTCCCC
T ss_pred EECCCCccc
Confidence 888777543
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=2.4e-22 Score=217.88 Aligned_cols=332 Identities=17% Similarity=0.156 Sum_probs=185.9
Q ss_pred CCCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccc-cccCCCC
Q 048833 281 IPKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCS-RKMGNLK 359 (629)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~ 359 (629)
+++.++.+.+..+.+... .+..+..+++|++|++++|....... ..|..+++|++|++++|.+..++ ..+.+++
T Consensus 26 l~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCSSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCc----ccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 445667777766665543 22356667777777777666554332 23556666777777777666554 3466666
Q ss_pred ccceeecccCCCccccch-hhccCCCccEeccCCccccc-cCCccccccCcccEEEecCcccccCc-c------------
Q 048833 360 HMRYLDLSRNSKIKKLPK-SICELQSLETLDLAGCLELE-ELPKDIKYLVNLRVLVLTTKQKSLQE-S------------ 424 (629)
Q Consensus 360 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~-~------------ 424 (629)
+|++|++++| .+..+|. .++++++|++|++++|.... .+|..++++++|++|++++|.+...+ .
T Consensus 101 ~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 101 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred cccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 6666666665 3444433 45666666666666653222 35666666666666666655432211 1
Q ss_pred --------------------------------------------------------------------------------
Q 048833 425 -------------------------------------------------------------------------------- 424 (629)
Q Consensus 425 -------------------------------------------------------------------------------- 424 (629)
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred hhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence
Q ss_pred -----------------cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCcccccc--------------
Q 048833 425 -----------------GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPA-------------- 473 (629)
Q Consensus 425 -----------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-------------- 473 (629)
.+..+++|+.|++++|. +..+|..+..+ +|++|++++|.. ..+|..
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~~-~~l~~~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCBC-SSCCBCBCSSCCEEEEESCB
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccCcc-cccCcccccccCEEeCcCCc
Confidence 11223344444444443 22334444444 444444444332 122221
Q ss_pred ------ccCCCccceeeccccccccccc-cccccCCC-------------CCCCCCCCCCceeeEeeccccCcccch-hh
Q 048833 474 ------IKYLSSLENLYLARCESLDLNL-NMEIEGEG-------------SHHDRKNTRPHLRRVFIMEITQLLELP-QW 532 (629)
Q Consensus 474 ------~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~-------------~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~ 532 (629)
...+++|++|++++|....... ...+.... ........+++|+.|++.++.-....+ ..
T Consensus 337 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp SCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhh
Confidence 1456777888887765332110 00000000 000112344567777776643222222 12
Q ss_pred hhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccC-ccCCcCCCCCCCcCeEeeeCCCccccccCCCCCCC
Q 048833 533 LLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKL-SSLPEGMHHVTTLKLLTIGGCPALSERCKPPTGED 611 (629)
Q Consensus 533 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 611 (629)
+ ..+++|+.|++++|......|..+..+++|++|++++|... ..+|..+..+++|+.|++++|.- .... ...
T Consensus 417 ~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l-~~~~----~~~ 489 (570)
T 2z63_A 417 F--LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLS----PTA 489 (570)
T ss_dssp T--TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-CEEC----TTT
T ss_pred h--hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc-ccCC----hhh
Confidence 2 56788999999988766667788888999999999997654 36888888999999999999863 2221 122
Q ss_pred CCcccCCCceeeCCccc
Q 048833 612 WPKISHIPQVYLDGEMI 628 (629)
Q Consensus 612 ~~~i~~l~~v~~~~~~~ 628 (629)
+....++..+.+.++.+
T Consensus 490 ~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQL 506 (570)
T ss_dssp TTTCTTCCEEECCSSCC
T ss_pred hhcccCCCEEeCCCCcC
Confidence 34556677777777654
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1e-22 Score=202.34 Aligned_cols=254 Identities=16% Similarity=0.155 Sum_probs=209.5
Q ss_pred CcceEEEEEcccCCcc-hhhhhccCCCCceEEEEec-CCCCccchHHHHHhhhcCccccEEEcCCCCcc-ccccccCCCC
Q 048833 283 KSVRHLSFAAANASRN-DFSSLLSDLGRVRTICFST-DDDEKTSQSFVESCISKSQFLRVLNLSESSIE-VCSRKMGNLK 359 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~L~l~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~l~ 359 (629)
..++.+.+..+..... .++..+..+++|+.|++++ |....... ..+..+++|++|++++|.+. .+|..+.+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC----hhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 4678888888877651 3567889999999999994 66553322 34788999999999999998 7888899999
Q ss_pred ccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccC-cccEEEecCcccc-cCcccCCCCCCCCeEee
Q 048833 360 HMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLV-NLRVLVLTTKQKS-LQESGIRSLGSLRSLKI 437 (629)
Q Consensus 360 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l 437 (629)
+|++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|++|++++|.+. ..+..+..++ |+.|++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 999999999865558999999999999999999865558999999998 9999999999987 4566677776 999999
Q ss_pred cCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceee
Q 048833 438 FGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRR 517 (629)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 517 (629)
++|......|..+..+++|+.|++++|......|. +..+++|++|++++|...
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~-------------------------- 257 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY-------------------------- 257 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCE--------------------------
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCccc--------------------------
Confidence 99987667888899999999999999876555554 788899999999987421
Q ss_pred EeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCC
Q 048833 518 VFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLP 580 (629)
Q Consensus 518 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp 580 (629)
..+|.++ ..+++|+.|++++|.....+|.. +.+++|+.|++.+|+.+...|
T Consensus 258 ---------~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 258 ---------GTLPQGL--TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ---------ECCCGGG--GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred ---------CcCChHH--hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 1344455 56789999999999766678875 889999999999998777655
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2.7e-22 Score=206.31 Aligned_cols=282 Identities=15% Similarity=0.115 Sum_probs=222.3
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccc-cCCCCcc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRK-MGNLKHM 361 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L 361 (629)
+.++.+.+..+.+... .+..+..+++|+.|++++|........ .+..+++|++|++++|.+..+|.. +.++++|
T Consensus 69 ~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp CCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 4688888888776654 235788999999999999887765443 377899999999999999999887 5899999
Q ss_pred ceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCC
Q 048833 362 RYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 362 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 441 (629)
++|++++|......|..+.++++|++|++++| .+..++ ++.+++|++|++++|.+... ...++|+.|++++|.
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNS 216 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC--GGGCTTCSEEECCSSCCSEE----ECCSSCSEEECCSSC
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc--cccccccceeeccccccccc----CCCCcceEEECCCCe
Confidence 99999998544445667899999999999997 455554 67899999999999876543 344689999999987
Q ss_pred CcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeec
Q 048833 442 DLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIM 521 (629)
Q Consensus 442 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 521 (629)
. ..++. ...++|+.|++++|.. +.. ..+..+++|++|++++|...... .......++|+.|+++
T Consensus 217 l-~~~~~--~~~~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 217 I-NVVRG--PVNVELTILKLQHNNL-TDT-AWLLNYPGLVEVDLSYNELEKIM-----------YHPFVKMQRLERLYIS 280 (390)
T ss_dssp C-CEEEC--CCCSSCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCEEE-----------SGGGTTCSSCCEEECC
T ss_pred e-eeccc--cccccccEEECCCCCC-ccc-HHHcCCCCccEEECCCCcCCCcC-----------hhHccccccCCEEECC
Confidence 4 44443 3458999999988764 444 46888999999999998543321 1223456789999998
Q ss_pred cccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCc
Q 048833 522 EITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPA 599 (629)
Q Consensus 522 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 599 (629)
++ .+..+|... ..+++|+.|++++|. ++.+|..+..+++|++|++++|. ++.+| +..+++|+.|++++|+-
T Consensus 281 ~n-~l~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 281 NN-RLVALNLYG--QPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SS-CCCEEECSS--SCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred CC-cCcccCccc--CCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCc
Confidence 85 566676655 678999999999984 77888888889999999999974 66665 66889999999999983
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=4.1e-22 Score=216.38 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=84.7
Q ss_pred cceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccc-cCCCCccc
Q 048833 284 SVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRK-MGNLKHMR 362 (629)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~ 362 (629)
.++.+.+..+.+... .+..+..+++|+.|++++|.+...... .+..+++|++|++++|.+..+|.. ++++++|+
T Consensus 52 ~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 52 NQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 345555554444332 123345566677777666655543322 255666677777777666655543 46666777
Q ss_pred eeecccCCCccccchh-hccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCC
Q 048833 363 YLDLSRNSKIKKLPKS-ICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 363 ~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 441 (629)
+|+|++| .+..+|.. ++++++|++|++++|......|..++.+++|++|++++|.+...+ +..+++|+.|++++|.
T Consensus 127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCc
Confidence 7777666 34455543 466667777777666433334445666677777777666655432 3344555555555443
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=9.9e-22 Score=207.95 Aligned_cols=298 Identities=19% Similarity=0.183 Sum_probs=237.6
Q ss_pred CCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccc-ccccCCCCccceeecccCCCccccch-hhccCCCc
Q 048833 308 GRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVC-SRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSL 385 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L 385 (629)
+.++.|++++|.+...... .|..+++|++|++++|.+..+ |..+.++++|++|+|++| .+..+|. .+.++++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQD----EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCSSCCCEECTT----TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTC
T ss_pred CCCcEEECCCCccceECHh----HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCC
Confidence 5899999999988766433 478899999999999999877 667999999999999988 4666665 57899999
Q ss_pred cEeccCCccccccCCccccccCcccEEEecCcccccC-cccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccC
Q 048833 386 ETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQ-ESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESC 464 (629)
Q Consensus 386 ~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 464 (629)
++|++++|......|..+..+++|++|++++|.+... +..+..+++|+.|++++|......+..+..+++|+.|++++|
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 9999999866666677899999999999999987755 457889999999999999765544566899999999999998
Q ss_pred CCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEE
Q 048833 465 PRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDL 544 (629)
Q Consensus 465 ~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 544 (629)
......+..+..+++|++|++++|..+... ........+|+.|+++++ .+..+|...+ ..+++|+.|
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----------~~~~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L 253 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTM-----------TPNCLYGLNLTSLSITHC-NLTAVPYLAV-RHLVYLRFL 253 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEE-----------CTTTTTTCCCSEEEEESS-CCCSCCHHHH-TTCTTCCEE
T ss_pred cCcEeChhhcccCcccceeeCCCCcccccc-----------CcccccCccccEEECcCC-cccccCHHHh-cCccccCee
Confidence 766555667899999999999998654322 112223348999999986 5667775433 678999999
Q ss_pred EecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCccccccCCCCCCCCCcccCCCceeeC
Q 048833 545 FIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPALSERCKPPTGEDWPKISHIPQVYLD 624 (629)
Q Consensus 545 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~v~~~ 624 (629)
++++|......+..+..+++|++|+|++|......|..+..+++|+.|++++|. ++.. ....+..+.++..+.+.
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~----~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTL----EESVFHSVGNLETLILD 328 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCC----CGGGBSCGGGCCEEECC
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-Ccee----CHhHcCCCcccCEEEcc
Confidence 999997544445678999999999999986555667888999999999999995 3322 12234456778888998
Q ss_pred Cccc
Q 048833 625 GEMI 628 (629)
Q Consensus 625 ~~~~ 628 (629)
++.+
T Consensus 329 ~N~l 332 (477)
T 2id5_A 329 SNPL 332 (477)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 8864
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2e-21 Score=203.02 Aligned_cols=297 Identities=14% Similarity=0.132 Sum_probs=191.6
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMR 362 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 362 (629)
+.++.+.+..+.+... ..+..+++|+.|++++|.+.... +..+++|++|++++|.+..++ +..+++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp TTCCEEECCSSCCCCC---TTGGGCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred CCCCEEEccCCCcccC---hhhcccCCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 4567777777666553 24677788888888877766541 567777888888888877764 77778888
Q ss_pred eeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCC
Q 048833 363 YLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRD 442 (629)
Q Consensus 363 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 442 (629)
+|++++| .+..+| ++.+++|++|++++| .+..++ ++.+++|++|++++|...... .+..+++|+.|++++|..
T Consensus 110 ~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 110 YLNCDTN-KLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp EEECCSS-CCSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCC
T ss_pred EEECCCC-cCCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCcc
Confidence 8888776 455555 677888888888876 455553 677788888888877433222 467778888888887763
Q ss_pred cchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeecc
Q 048833 443 LEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIME 522 (629)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 522 (629)
+.+| ++.+++|+.|++++|. ++.++ +..+++|++|++++|..... ....+++|+.|++++
T Consensus 183 -~~l~--l~~l~~L~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N~l~~i--------------p~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 183 -TELD--VSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLTEI--------------DVTPLTQLTYFDCSV 242 (457)
T ss_dssp -CCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCC--------------CCTTCTTCSEEECCS
T ss_pred -ceec--cccCCCCCEEECcCCc-CCeec--cccCCCCCEEECcCCccccc--------------CccccCCCCEEEeeC
Confidence 3444 6777888888887765 34442 67778888888887743221 134556888888887
Q ss_pred ccCcccchhhhhcCCCCCc----------cEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeE
Q 048833 523 ITQLLELPQWLLQGSTDTL----------RDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLL 592 (629)
Q Consensus 523 ~~~l~~~~~~~~~~~~~~L----------~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 592 (629)
+ .+..+|. ..+++| +.|++++|.....+| ++.+++|+.|++++|..++.+|. ..++|+.|
T Consensus 243 N-~l~~~~~----~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L 312 (457)
T 3bz5_A 243 N-PLTELDV----STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITEL 312 (457)
T ss_dssp S-CCSCCCC----TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCC
T ss_pred C-cCCCcCH----HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEe
Confidence 5 4444442 234444 455555555555555 46788999999999887777764 23445555
Q ss_pred eeeCCCccccccCCC---CCCCCCcccCCCceeeCCccc
Q 048833 593 TIGGCPALSERCKPP---TGEDWPKISHIPQVYLDGEMI 628 (629)
Q Consensus 593 ~l~~c~~l~~~~~~~---~~~~~~~i~~l~~v~~~~~~~ 628 (629)
++++|+.|....-.. .+.+......+..+.+.++.+
T Consensus 313 ~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 313 DLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSSCC
T ss_pred chhhcccCCEEECCCCcccccccccCCcCcEEECCCCCC
Confidence 555555554432111 112333445566667776654
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=3.1e-21 Score=193.62 Aligned_cols=267 Identities=15% Similarity=0.179 Sum_probs=183.2
Q ss_pred CCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccc-ccccCCCCccceeecccCCCccccchhhccCCCcc
Q 048833 308 GRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVC-SRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLE 386 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 386 (629)
+.++.|++++|.+...... .+..+++|++|++++|.+..+ |..+..+++|++|++++| .+..+|..+. ++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQ 124 (330)
T ss_dssp TTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--cccc
Confidence 6788899988877765443 367888999999999998876 667888999999999987 5677877654 7899
Q ss_pred EeccCCccccccCCccccccCcccEEEecCcccc---cCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEeccc
Q 048833 387 TLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKS---LQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIES 463 (629)
Q Consensus 387 ~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 463 (629)
+|++++|......+..+..+++|++|++++|.+. ..+..+..+++|+.|++++|. +..+|..+. ++|++|++++
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDG 201 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTT
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCC
Confidence 9999987433333445788999999999988775 334567788999999998886 445555443 7899999988
Q ss_pred CCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccE
Q 048833 464 CPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRD 543 (629)
Q Consensus 464 ~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 543 (629)
|......|..+..+++|++|++++|...... +..+ ..+++|+.
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------------------------------~~~~--~~l~~L~~ 244 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVD-----------------------------------NGSL--ANTPHLRE 244 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEEC-----------------------------------TTTG--GGSTTCCE
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeC-----------------------------------hhhc--cCCCCCCE
Confidence 8755555777888999999999887422111 0112 34567777
Q ss_pred EEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCc-CCC------CCCCcCeEeeeCCCccccccCCCCCCCCCccc
Q 048833 544 LFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPE-GMH------HVTTLKLLTIGGCPALSERCKPPTGEDWPKIS 616 (629)
Q Consensus 544 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~ 616 (629)
|++++|. ++.+|..+..+++|++|++++| .++.+|. .+. ..++|+.|++++||-......+ ..+....
T Consensus 245 L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~---~~f~~~~ 319 (330)
T 1xku_A 245 LHLNNNK-LVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP---STFRCVY 319 (330)
T ss_dssp EECCSSC-CSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG---GGGTTCC
T ss_pred EECCCCc-CccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCc---ccccccc
Confidence 7777763 5577777777777777777775 3444442 221 2356777777777733222211 2344455
Q ss_pred CCCceeeCCc
Q 048833 617 HIPQVYLDGE 626 (629)
Q Consensus 617 ~l~~v~~~~~ 626 (629)
++..|++.++
T Consensus 320 ~l~~l~L~~N 329 (330)
T 1xku_A 320 VRAAVQLGNY 329 (330)
T ss_dssp CGGGEEC---
T ss_pred ceeEEEeccc
Confidence 5666666654
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.7e-21 Score=195.60 Aligned_cols=190 Identities=16% Similarity=0.206 Sum_probs=145.3
Q ss_pred ceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccc-ccccCCCCccce
Q 048833 285 VRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVC-SRKMGNLKHMRY 363 (629)
Q Consensus 285 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~ 363 (629)
++.+.+....... ++..+ .+.++.|++++|.+..... ..+..+++|++|++++|.+..+ |..+.++++|++
T Consensus 35 l~~l~~~~~~l~~--ip~~~--~~~l~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 35 LRVVQCSDLGLKA--VPKEI--SPDTTLLDLQNNDISELRK----DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp TTEEECCSSCCSS--CCSCC--CTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred CCEEECCCCCccc--cCCCC--CCCCeEEECCCCcCCccCH----hHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 4555555444432 22222 3689999999988775543 2377899999999999999877 667899999999
Q ss_pred eecccCCCccccchhhccCCCccEeccCCccccccCCc-cccccCcccEEEecCcccc---cCcccCCCCCCCCeEeecC
Q 048833 364 LDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPK-DIKYLVNLRVLVLTTKQKS---LQESGIRSLGSLRSLKIFG 439 (629)
Q Consensus 364 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~ 439 (629)
|++++| .+..+|..+. ++|++|++++| .+..+|. .+..+++|++|++++|.+. ..+..+..+ +|+.|++++
T Consensus 107 L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 107 LYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp EECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred EECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 999987 5778887665 89999999997 4556654 5789999999999999875 334556666 899999999
Q ss_pred CCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeecccccc
Q 048833 440 CRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCES 490 (629)
Q Consensus 440 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 490 (629)
|. +..+|..+. ++|+.|++++|......+..+..+++|++|++++|..
T Consensus 182 n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 182 AK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp SB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred CC-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 87 445665543 7999999999876555567889999999999998743
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=2.3e-21 Score=209.37 Aligned_cols=289 Identities=17% Similarity=0.153 Sum_probs=191.8
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccc--cccCCCCc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCS--RKMGNLKH 360 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~l~~ 360 (629)
..++.+.+..+.+... .+..+..+++|+.|++++|.+...+.. .+++|++|++++|.+..++ ..+.++++
T Consensus 76 ~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~-------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 76 SELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQNISCC-------PMASLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp TTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCCEECSC-------CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred CCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCCccCcc-------ccccCCEEECCCCCccccCchHhhcccCc
Confidence 5678888888877654 346678889999999998887754432 6788999999999888754 57888899
Q ss_pred cceeecccCCCccccchhhccCCCc--cEeccCCccc--cccCCcccccc--------------------------C---
Q 048833 361 MRYLDLSRNSKIKKLPKSICELQSL--ETLDLAGCLE--LEELPKDIKYL--------------------------V--- 407 (629)
Q Consensus 361 L~~L~l~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~lp~~i~~l--------------------------~--- 407 (629)
|++|++++|. +.. ..+..+++| ++|++++|.. ....|..+..+ +
T Consensus 148 L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 224 (562)
T 3a79_B 148 LTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224 (562)
T ss_dssp CCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred ccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE
Confidence 9999998874 332 234455555 7777776643 22333333221 1
Q ss_pred ----------------------------------------------------cccEEEecCcccc-cCcccC--------
Q 048833 408 ----------------------------------------------------NLRVLVLTTKQKS-LQESGI-------- 426 (629)
Q Consensus 408 ----------------------------------------------------~L~~L~l~~~~~~-~~~~~~-------- 426 (629)
+|++|++++|.+. ..+..+
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L 304 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSC
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccc
Confidence 4444444444433 112111
Q ss_pred ---------------------------------------------CCCCCCCeEeecCCCCcchhhhhCCCCCccceEec
Q 048833 427 ---------------------------------------------RSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSI 461 (629)
Q Consensus 427 ---------------------------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 461 (629)
..+++|+.|++++|......|..++.+++|+.|++
T Consensus 305 ~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 384 (562)
T 3a79_B 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384 (562)
T ss_dssp CEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC
T ss_pred hheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEEC
Confidence 55677777777777655556677777777777777
Q ss_pred ccCCCCc--cccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCC
Q 048833 462 ESCPRLI--SLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTD 539 (629)
Q Consensus 462 ~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 539 (629)
++|.... .+|..+..+++|++|++++|...... ........++|+.|+++++.-....|..+ .+
T Consensus 385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~ 450 (562)
T 3a79_B 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA----------YDRTCAWAESILVLNLSSNMLTGSVFRCL----PP 450 (562)
T ss_dssp CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC----------SSCCCCCCTTCCEEECCSSCCCGGGGSSC----CT
T ss_pred CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc----------ChhhhcCcccCCEEECCCCCCCcchhhhh----cC
Confidence 7765332 34456677777778887776533200 01123345688888888764333333222 16
Q ss_pred CccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcC-CCCCCCcCeEeeeCCC
Q 048833 540 TLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEG-MHHVTTLKLLTIGGCP 598 (629)
Q Consensus 540 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~ 598 (629)
+|+.|++++| .++.+|..+..+++|++|++++| .++.+|.. +..+++|+.|++++||
T Consensus 451 ~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 451 KVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred cCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 8899999888 46788887788899999999885 56678876 7888889999998887
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=8.2e-22 Score=212.65 Aligned_cols=177 Identities=18% Similarity=0.240 Sum_probs=116.1
Q ss_pred CCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccc-cCCCCc
Q 048833 282 PKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRK-MGNLKH 360 (629)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~ 360 (629)
++.++.+.+..+.+... .+..+..+++|++|++++|.+..... ..+..+++|++|++++|.+..++.. +.++++
T Consensus 25 ~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEG----DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccCh----hhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 45678888877776554 23557788888888888877665443 2366778888888888888776654 778888
Q ss_pred cceeecccCCCcc-ccchhhccCCCccEeccCCccccccCC-ccccccCcccEEEecCccccc-CcccCCCCCCCCeEee
Q 048833 361 MRYLDLSRNSKIK-KLPKSICELQSLETLDLAGCLELEELP-KDIKYLVNLRVLVLTTKQKSL-QESGIRSLGSLRSLKI 437 (629)
Q Consensus 361 L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l 437 (629)
|++|++++|.... ..|..++++++|++|++++|..+..+| ..++.+++|++|++++|.+.. .+..+..+++|+.|++
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 8888888774322 345667788888888888776566665 467788888888888777654 3445666666666665
Q ss_pred cCCCCcchhhhh-CCCCCccceEecccC
Q 048833 438 FGCRDLEHLFEE-IDQLSVLRTLSIESC 464 (629)
Q Consensus 438 ~~~~~~~~~~~~-~~~l~~L~~L~l~~~ 464 (629)
++|.. ..++.. +..+++|+.|++++|
T Consensus 180 ~~n~~-~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 180 HLSES-AFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp ECSBS-TTHHHHHHHSTTTBSEEEEESC
T ss_pred ccCcc-cccchhhHhhcccccEEEccCC
Confidence 55542 222222 223445555555444
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=7.2e-21 Score=190.96 Aligned_cols=269 Identities=17% Similarity=0.147 Sum_probs=190.3
Q ss_pred ccccEEEcCCCCccccccccCCCCccceeecccCCCccccc-hhhccCCCccEeccCCccccccCCccccccCcccEEEe
Q 048833 336 QFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVL 414 (629)
Q Consensus 336 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 414 (629)
..+++++++++.+..+|..+. ++|++|++++|. +..++ ..++++++|++|++++|......|..++.+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 357888888888888776654 678888888774 55454 36788888888888887444444777888888888888
Q ss_pred cCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCc--cccccccCCCccceeecccccccc
Q 048833 415 TTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLI--SLPPAIKYLSSLENLYLARCESLD 492 (629)
Q Consensus 415 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~l~ 492 (629)
++|.+...+..+. ++|+.|++++|......+..+..+++|+.|++++|.... ..+..+..+++|++|++++|....
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 8887776555443 688888888887555555667888888888888776432 456667788888888888875432
Q ss_pred ccccccccCCCCCCCCCCCCCceeeEeeccccCcccc-hhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecc
Q 048833 493 LNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLEL-PQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIA 571 (629)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 571 (629)
... ...++|+.|+++++. +..+ +..+ ..+++|+.|++++|......+..+..+++|++|+++
T Consensus 186 l~~--------------~~~~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 186 IPQ--------------GLPPSLTELHLDGNK-ITKVDAASL--KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248 (330)
T ss_dssp CCS--------------SCCTTCSEEECTTSC-CCEECTGGG--TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred CCc--------------cccccCCEEECCCCc-CCccCHHHh--cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence 211 112578888888764 4444 4445 678999999999997544445578899999999999
Q ss_pred cCccCccCCcCCCCCCCcCeEeeeCCCccccccCCCC-CC-CCCcccCCCceeeCCccc
Q 048833 572 RCPKLSSLPEGMHHVTTLKLLTIGGCPALSERCKPPT-GE-DWPKISHIPQVYLDGEMI 628 (629)
Q Consensus 572 ~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~-~~~~i~~l~~v~~~~~~~ 628 (629)
+| .++.+|..+..+++|++|++++|+ ++......- +. .......+..+.+.++++
T Consensus 249 ~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 249 NN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcc
Confidence 96 677999999999999999999997 332211110 00 011234566677777764
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=6.2e-22 Score=213.61 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=98.4
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccc--cccccCCCCc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEV--CSRKMGNLKH 360 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~l~~ 360 (629)
..++.+.+..+.+... .+..+..+++|+.|++++|.+...... .+..+++|++|++++|.+.. .|..+.++++
T Consensus 50 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 50 ANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCHH----HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred CcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCHH----HhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 5688888888777654 345688899999999999887766544 36788999999999999884 4567889999
Q ss_pred cceeecccCCCccccc-hhhccCCCccEeccCCccccccCCccccccCcccEEEecCc
Q 048833 361 MRYLDLSRNSKIKKLP-KSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTK 417 (629)
Q Consensus 361 L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 417 (629)
|++|++++|..+..+| ..+.++++|++|++++|......|..++.+++|++|+++.|
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 9999999886566666 57888999999999988655556666655554444444433
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=6.8e-21 Score=198.94 Aligned_cols=279 Identities=16% Similarity=0.159 Sum_probs=215.2
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMR 362 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 362 (629)
..++.+.+..+.+... .+..+++|+.|++++|.+.... +..+++|++|++++|.+..+| +..+++|+
T Consensus 64 ~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~ 130 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNLD-------VTPLTKLTYLNCDTNKLTKLD--VSQNPLLT 130 (457)
T ss_dssp TTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECCSSCCSCCC--CTTCTTCC
T ss_pred CCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCceee-------cCCCCcCCEEECCCCcCCeec--CCCCCcCC
Confidence 5788899988887765 2778999999999998877652 678999999999999999875 88999999
Q ss_pred eeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCC
Q 048833 363 YLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRD 442 (629)
Q Consensus 363 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 442 (629)
+|++++| .+..++ ++.+++|++|++++|..+..+ .++.+++|++|++++|.+...+ +..+++|+.|++++|..
T Consensus 131 ~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 131 YLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp EEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCC
T ss_pred EEECCCC-ccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcC
Confidence 9999988 466664 789999999999998777777 4789999999999999988765 88999999999999874
Q ss_pred cchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeecc
Q 048833 443 LEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIME 522 (629)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 522 (629)
. .+ .++.+++|+.|++++|. ++.+| +..+++|+.|++++|....... ..............+|+.+++++
T Consensus 204 ~-~~--~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~l~~~~~----~~l~~L~~L~l~~n~L~~L~l~~ 273 (457)
T 3bz5_A 204 T-KL--DLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTELDV----STLSKLTTLHCIQTDLLEIDLTH 273 (457)
T ss_dssp S-CC--CCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCCC----TTCTTCCEEECTTCCCSCCCCTT
T ss_pred C-ee--ccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCcCCCcCH----HHCCCCCEEeccCCCCCEEECCC
Confidence 3 33 48889999999998876 45577 7889999999999986443221 00000000001122556666777
Q ss_pred ccCcccchhhhhcCCCCCccEEEecCCCCCccCCcC--------CCCCCCcCeeecccCccCccCCcCCCCCCCcCeEee
Q 048833 523 ITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRS--------LKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTI 594 (629)
Q Consensus 523 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~--------~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 594 (629)
+..+..+|. ..+++|+.|++++|..++.+|.. +..+++|++|++++| .++.++ +..+++|+.|++
T Consensus 274 n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 274 NTQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSC 346 (457)
T ss_dssp CTTCCEEEC----TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEEC
T ss_pred CccCCcccc----cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEEC
Confidence 666666652 56799999999999877666532 456678888888885 556664 778999999999
Q ss_pred eCCC
Q 048833 595 GGCP 598 (629)
Q Consensus 595 ~~c~ 598 (629)
++|.
T Consensus 347 ~~N~ 350 (457)
T 3bz5_A 347 VNAH 350 (457)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9876
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=4.5e-21 Score=192.58 Aligned_cols=286 Identities=17% Similarity=0.187 Sum_probs=214.4
Q ss_pred CceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccccc-ccCCCCccceeecccCCCccccchhhccCCCccE
Q 048833 309 RVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSR-KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLET 387 (629)
Q Consensus 309 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 387 (629)
+++.+.++++.....+... .+.|++|++++|.+..++. .+.++++|++|++++|......|..++++++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCccccCCCC-------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 5788888887766554322 3679999999999998754 6899999999999998544445788999999999
Q ss_pred eccCCccccccCCccccccCcccEEEecCcccccCcc-cCCCCCCCCeEeecCCCCc--chhhhhCCCCCccceEecccC
Q 048833 388 LDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQES-GIRSLGSLRSLKIFGCRDL--EHLFEEIDQLSVLRTLSIESC 464 (629)
Q Consensus 388 L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~ 464 (629)
|++++| .+..+|..+. ++|++|++++|.+...+. .+..+++|+.|++++|... ...+..+..+ +|+.|++++|
T Consensus 107 L~L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 107 LYISKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp EECCSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred EECCCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 999997 6778887765 899999999998886654 4789999999999998753 2456667777 9999999887
Q ss_pred CCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchh-hhhcCCCCCccE
Q 048833 465 PRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQ-WLLQGSTDTLRD 543 (629)
Q Consensus 465 ~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~ 543 (629)
. ++.+|..+. ++|++|++++|...... ......+++|+.|+++++ .+..++. ++ ..+++|+.
T Consensus 183 ~-l~~l~~~~~--~~L~~L~l~~n~i~~~~-----------~~~l~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~ 245 (332)
T 2ft3_A 183 K-LTGIPKDLP--ETLNELHLDHNKIQAIE-----------LEDLLRYSKLYRLGLGHN-QIRMIENGSL--SFLPTLRE 245 (332)
T ss_dssp B-CSSCCSSSC--SSCSCCBCCSSCCCCCC-----------TTSSTTCTTCSCCBCCSS-CCCCCCTTGG--GGCTTCCE
T ss_pred C-CCccCcccc--CCCCEEECCCCcCCccC-----------HHHhcCCCCCCEEECCCC-cCCcCChhHh--hCCCCCCE
Confidence 5 566777654 79999999998543321 123445678999999886 4455543 44 56799999
Q ss_pred EEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCc-CCCC------CCCcCeEeeeCCCccccccCCCCCCCCCccc
Q 048833 544 LFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPE-GMHH------VTTLKLLTIGGCPALSERCKPPTGEDWPKIS 616 (629)
Q Consensus 544 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~------l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~ 616 (629)
|++++|. ++.+|..+..+++|+.|++++| .++.+|. .+.. .++|+.|++++||-......+ ..+..+.
T Consensus 246 L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~---~~~~~l~ 320 (332)
T 2ft3_A 246 LHLDNNK-LSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP---ATFRCVT 320 (332)
T ss_dssp EECCSSC-CCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG---GGGTTBC
T ss_pred EECCCCc-CeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCc---ccccccc
Confidence 9999985 6799999999999999999996 5666553 3322 467999999999944322222 2355567
Q ss_pred CCCceeeCCcc
Q 048833 617 HIPQVYLDGEM 627 (629)
Q Consensus 617 ~l~~v~~~~~~ 627 (629)
++..+.+.+++
T Consensus 321 ~L~~l~l~~n~ 331 (332)
T 2ft3_A 321 DRLAIQFGNYK 331 (332)
T ss_dssp CSTTEEC----
T ss_pred hhhhhhccccc
Confidence 77778877653
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=7.1e-21 Score=200.44 Aligned_cols=310 Identities=19% Similarity=0.244 Sum_probs=145.4
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMR 362 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 362 (629)
..++.+.+..+...... . +..+++|+.|.++++....... +..+++|++|++++|.+..++. +..+++|+
T Consensus 68 ~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 137 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITDIDP-LKNLTNLN 137 (466)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG-GTTCTTCS
T ss_pred cCCCEEECCCCccCCch--h-hhccccCCEEECCCCccccChh------hcCCCCCCEEECCCCCCCCChH-HcCCCCCC
Confidence 35555665555544431 1 5566666666666655544322 4556666666666666665543 55666666
Q ss_pred eeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCC
Q 048833 363 YLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRD 442 (629)
Q Consensus 363 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 442 (629)
+|++++| .+..+|. ++.+++|+.|++++ ....++ .+..+++|++|++++|.+...+ .+..+++|+.|++++|..
T Consensus 138 ~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~--~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 138 RLELSSN-TISDISA-LSGLTSLQQLSFGN--QVTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI 211 (466)
T ss_dssp EEEEEEE-EECCCGG-GTTCTTCSEEEEEE--SCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred EEECCCC-ccCCChh-hccCCcccEeecCC--cccCch-hhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcc
Confidence 6666655 2333332 34444444444431 112222 1444455555555555443332 244445555555554442
Q ss_pred cchhhhhCCCCCccceEecccCCCCccccccccCCCccceeecccccccccccccccc--------CCC-CCCCCCCCCC
Q 048833 443 LEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIE--------GEG-SHHDRKNTRP 513 (629)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~--------~~~-~~~~~~~~~~ 513 (629)
....+ ++.+++|+.|++++|. ++.++ .+..+++|++|++++|............ ... ........++
T Consensus 212 ~~~~~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~ 287 (466)
T 1o6v_A 212 SDITP--LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 287 (466)
T ss_dssp CCCGG--GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred ccccc--ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCC
Confidence 22111 3344444555444433 22222 2344444444444444322111000000 000 0000022344
Q ss_pred ceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEe
Q 048833 514 HLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLT 593 (629)
Q Consensus 514 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 593 (629)
+|+.|+++++ .+..++. + ..+++|+.|++++|. +..++. +..+++|++|++++| .+..++ .+..+++|+.|+
T Consensus 288 ~L~~L~L~~n-~l~~~~~-~--~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~ 359 (466)
T 1o6v_A 288 ALTNLELNEN-QLEDISP-I--SNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLS 359 (466)
T ss_dssp TCSEEECCSS-CCSCCGG-G--GGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEE
T ss_pred ccCeEEcCCC-cccCchh-h--cCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCC-ccCCch-hhccCCCCCEEe
Confidence 5666666554 3333433 2 345666777776664 333333 456677777777775 444443 456677777777
Q ss_pred eeCCCccccccCCCCCCCCCcccCCCceeeCCcc
Q 048833 594 IGGCPALSERCKPPTGEDWPKISHIPQVYLDGEM 627 (629)
Q Consensus 594 l~~c~~l~~~~~~~~~~~~~~i~~l~~v~~~~~~ 627 (629)
+++|+- ..... ...+.++..+.+.++.
T Consensus 360 l~~n~l-~~~~~------~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 360 AGHNQI-SDLTP------LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCSSCC-CBCGG------GTTCTTCCEEECCCEE
T ss_pred CCCCcc-Cccch------hhcCCCCCEEeccCCc
Confidence 777752 21111 2233445556666554
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=2.4e-21 Score=192.24 Aligned_cols=224 Identities=21% Similarity=0.172 Sum_probs=154.1
Q ss_pred ccccEEEcCCCCccccccc-cCCCCccceeecccCCCcccc---chhhccCCCccEeccCCccccccCCccccccCcccE
Q 048833 336 QFLRVLNLSESSIEVCSRK-MGNLKHMRYLDLSRNSKIKKL---PKSICELQSLETLDLAGCLELEELPKDIKYLVNLRV 411 (629)
Q Consensus 336 ~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 411 (629)
+.|++|+++++.+..+|.. +.++++|++|++++|. +..+ |..+..+++|++|++++| .+..+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 5688888888888877765 6788888888888774 4433 566777888888888887 56677777888888888
Q ss_pred EEecCcccccCc--ccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCc-cccccccCCCccceeecccc
Q 048833 412 LVLTTKQKSLQE--SGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLI-SLPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 412 L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~ 488 (629)
|++++|.+...+ ..+..+++|+.|++++|......+..+..+++|++|++++|.... .+|..+..+++|++|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 888888777654 367788888888888887655566677788888888888776444 46777888888888888877
Q ss_pred ccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCee
Q 048833 489 ESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETL 568 (629)
Q Consensus 489 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 568 (629)
..... .|..+ ..+++|+.|++++|......+..+..+++|+.|
T Consensus 186 ~l~~~-----------------------------------~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 186 QLEQL-----------------------------------SPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CCCEE-----------------------------------CTTTT--TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CcCCc-----------------------------------CHHHh--cCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 42211 01122 345566666666664332223345666666666
Q ss_pred ecccCccCccCCcCCCCCC-CcCeEeeeCCC
Q 048833 569 VIARCPKLSSLPEGMHHVT-TLKLLTIGGCP 598 (629)
Q Consensus 569 ~l~~c~~l~~lp~~~~~l~-~L~~L~l~~c~ 598 (629)
++++|......|..+..++ +|+.|++++|+
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 6666654444555555553 66666666665
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=1.4e-20 Score=198.14 Aligned_cols=276 Identities=18% Similarity=0.261 Sum_probs=176.0
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMR 362 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 362 (629)
..++.+.+..+...... . +..+++|+.|++++|....... +..+++|++|++++|.+..++. +..+++|+
T Consensus 90 ~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~ 159 (466)
T 1o6v_A 90 TKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISDISA-LSGLTSLQ 159 (466)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCCGG-GTTCTTCS
T ss_pred ccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCCCCCChH------HcCCCCCCEEECCCCccCCChh-hccCCccc
Confidence 57888998888776652 2 8899999999999988776532 7889999999999999887653 55555555
Q ss_pred eeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCc-------------------
Q 048833 363 YLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQE------------------- 423 (629)
Q Consensus 363 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~------------------- 423 (629)
+|++++ .+..++. +.++++|+.|++++| .+..++ .+..+++|++|++++|.+...+
T Consensus 160 ~L~l~~--~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 160 QLSFGN--QVTDLKP-LANLTTLERLDISSN-KVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 234 (466)
T ss_dssp EEEEEE--SCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred EeecCC--cccCchh-hccCCCCCEEECcCC-cCCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc
Confidence 555542 1222222 455555555555554 233332 2444555555555544443332
Q ss_pred --ccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccC
Q 048833 424 --SGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEG 501 (629)
Q Consensus 424 --~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 501 (629)
..+..+++|+.|++++|.... .+. +..+++|+.|++++|. +..++. +..+++|++|++++|......
T Consensus 235 ~~~~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~------- 303 (466)
T 1o6v_A 235 DIGTLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDIS------- 303 (466)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCG-------
T ss_pred cchhhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCch-------
Confidence 234445555555555554322 222 4555556666655543 223333 555666666666655322211
Q ss_pred CCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCc
Q 048833 502 EGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPE 581 (629)
Q Consensus 502 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 581 (629)
....+++|+.|+++++ .+...+. + ..+++|+.|++++|. ++.++ .+..+++|+.|++++|......|
T Consensus 304 ------~~~~l~~L~~L~L~~n-~l~~~~~-~--~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~- 370 (466)
T 1o6v_A 304 ------PISNLKNLTYLTLYFN-NISDISP-V--SSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP- 370 (466)
T ss_dssp ------GGGGCTTCSEEECCSS-CCSCCGG-G--GGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCBCGG-
T ss_pred ------hhcCCCCCCEEECcCC-cCCCchh-h--ccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCccCccch-
Confidence 1345679999999987 4555544 2 578999999999985 56654 58899999999999986544444
Q ss_pred CCCCCCCcCeEeeeCCC
Q 048833 582 GMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 582 ~~~~l~~L~~L~l~~c~ 598 (629)
+..+++|+.|++++|+
T Consensus 371 -~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 371 -LANLTRITQLGLNDQA 386 (466)
T ss_dssp -GTTCTTCCEEECCCEE
T ss_pred -hhcCCCCCEEeccCCc
Confidence 7899999999999997
No 46
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.87 E-value=4.3e-22 Score=216.31 Aligned_cols=220 Identities=25% Similarity=0.364 Sum_probs=166.7
Q ss_pred CCcHHHHHHHHHHHcCC--ceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhhcccCCCCceeC---
Q 048833 13 QSNLDQLQKVLRYSLKG--KRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVASIMGTRGGTTGFNL--- 87 (629)
Q Consensus 13 ~~~~~~~~~~l~~~L~~--k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~~~~l--- 87 (629)
..+.+.+...+++.+.+ +++||||||||+. ..+ . .+ ++||+||||||++.++..+. ...|++
T Consensus 217 ~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l---~-~l---~~~~~ilvTsR~~~~~~~~~----~~~~~v~~l 283 (591)
T 1z6t_A 217 PLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVL---K-AF---DSQCQILLTTRDKSVTDSVM----GPKYVVPVE 283 (591)
T ss_dssp CCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHH---H-TT---CSSCEEEEEESCGGGGTTCC----SCEEEEECC
T ss_pred CCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHH---H-Hh---cCCCeEEEECCCcHHHHhcC----CCceEeecC
Confidence 34567788888888876 7899999999853 222 2 22 67999999999998765543 144555
Q ss_pred CCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCCCCHHHHHHHhhhhccc----c----
Q 048833 88 QGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDSTDEHFWEYVRDNEIWQ----L---- 159 (629)
Q Consensus 88 ~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~~~~~w~~~~~~~~~~----~---- 159 (629)
++|+.+||++||...++... ....+.+.+|+++|+|+||||+.+|++++.+.. .|+.+.+..... +
T Consensus 284 ~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~--~w~~~l~~l~~~~~~~~~~~~ 357 (591)
T 1z6t_A 284 SSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--RWEYYLKQLQNKQFKRIRKSS 357 (591)
T ss_dssp SSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT--CHHHHHHHHHSCCCCCSSCCC
T ss_pred CCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch--hHHHHHHHHHHhHHHHhhhcc
Confidence 58999999999999986421 122356789999999999999999999987542 466543322111 0
Q ss_pred ccccCCcchhhhcccccCChhhhhhhhhhccCCCCceeChHhHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCCcee
Q 048833 160 EQKESGILPALRLSYDQLPPRLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQ 239 (629)
Q Consensus 160 ~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~fp~~~~~~~~~l~~~wi~eg~i~~~~~~~~~~~~~~~~l~~L~~r~ll~ 239 (629)
......+..++..||+.||++.|.||+++|+||+++.++...+...|.++ .+.+..++..|++++++.
T Consensus 358 ~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~ 425 (591)
T 1z6t_A 358 SYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLF 425 (591)
T ss_dssp SSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSE
T ss_pred ccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeE
Confidence 11123577889999999999999999999999999999999999888543 234788999999999998
Q ss_pred ecccCCCCceEEEEEeChhHHHHHHHHh
Q 048833 240 DLTFGMFGLEVLTFKMHDLMHDLAMLVA 267 (629)
Q Consensus 240 ~~~~~~~~~~~~~~~mhd~~~~~~~~~~ 267 (629)
.... + ....++||+++++++....
T Consensus 426 ~~~~---~-~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 426 CDRN---G-KSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EEEE---T-TEEEEECCHHHHHHHHHHT
T ss_pred EecC---C-CccEEEEcHHHHHHHHhhh
Confidence 5432 2 3558999999999998763
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.2e-20 Score=213.20 Aligned_cols=312 Identities=14% Similarity=0.067 Sum_probs=234.4
Q ss_pred CCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCC-cccc-ccccCCCCccceeecccCCCccccchhhccCC
Q 048833 306 DLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESS-IEVC-SRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ 383 (629)
Q Consensus 306 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 383 (629)
-.++++.|++++|.+..... ..+..+++|++|++++|. +..+ |..+.++++|++|+|++|......|..+++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~----~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTA----SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEECS----SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCccCh----hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 45789999999988776543 337899999999999995 4455 66799999999999999865556688999999
Q ss_pred CccEeccCCccccccCCcc--ccccCcccEEEecCcccccCc--ccCCCCCCCCeEeecCCCCcchhhhhCCCC--Cccc
Q 048833 384 SLETLDLAGCLELEELPKD--IKYLVNLRVLVLTTKQKSLQE--SGIRSLGSLRSLKIFGCRDLEHLFEEIDQL--SVLR 457 (629)
Q Consensus 384 ~L~~L~l~~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~ 457 (629)
+|++|+|++|.....+|.. ++.+++|++|++++|.+.... ..++++++|++|++++|......+..+..+ ++|+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 9999999998655556665 899999999999999887653 468999999999999998666566666666 8999
Q ss_pred eEecccCCCCccccccccCCCc------cceeeccccccccccccccc---------------------------cCCCC
Q 048833 458 TLSIESCPRLISLPPAIKYLSS------LENLYLARCESLDLNLNMEI---------------------------EGEGS 504 (629)
Q Consensus 458 ~L~l~~~~~~~~lp~~~~~l~~------L~~L~l~~~~~l~~~~~~~~---------------------------~~~~~ 504 (629)
.|++++|......|..+..+++ |++|++++|........... .....
T Consensus 178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~ 257 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257 (844)
T ss_dssp CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence 9999999877777777776665 99999998843211100000 00000
Q ss_pred CCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCC
Q 048833 505 HHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMH 584 (629)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 584 (629)
........++|+.|+++++.-....+..+ ..+++|+.|++++|......|..+..+++|++|+|++|......|..+.
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred hhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 01111224689999998864333334444 6789999999999976666677899999999999999765555577889
Q ss_pred CCCCcCeEeeeCCCccccccCCCCCCCCCcccCCCceeeCCccc
Q 048833 585 HVTTLKLLTIGGCPALSERCKPPTGEDWPKISHIPQVYLDGEMI 628 (629)
Q Consensus 585 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~v~~~~~~~ 628 (629)
.+++|+.|++++|. +. ......+....++..+.+.++.+
T Consensus 336 ~l~~L~~L~L~~N~-i~----~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 336 GLPKVAYIDLQKNH-IA----IIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp SCTTCCEEECCSCC-CC----CCCSSCSCSCCCCCEEEEETCCS
T ss_pred CCCCCCEEECCCCC-CC----ccChhhhcCCCCCCEEECCCCCC
Confidence 99999999999996 32 22223455567788888877764
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.5e-21 Score=209.07 Aligned_cols=282 Identities=15% Similarity=0.122 Sum_probs=220.6
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccc-cCCCCcc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRK-MGNLKHM 361 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L 361 (629)
+.++.+.+..+.+... .+..+..+++|+.|++++|.+...... .+..+++|++|++++|.+..+|.. +.++++|
T Consensus 75 ~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 75 RQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp CCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 4678888888777654 335788999999999999988765543 378899999999999999999887 5899999
Q ss_pred ceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCC
Q 048833 362 RYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 362 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 441 (629)
++|++++|......|..++++++|++|++++| .+..++ ++.+++|++|++++|.+... ...++|+.|++++|.
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNS 222 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC--GGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC--hhhhhhhhhhhcccCccccc----cCCchhheeeccCCc
Confidence 99999998655555667999999999999998 555554 67889999999999876543 345689999999887
Q ss_pred CcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeec
Q 048833 442 DLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIM 521 (629)
Q Consensus 442 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 521 (629)
. ..++..+ .++|+.|++++|... . +..+..+++|+.|++++|...... ......+++|+.|+++
T Consensus 223 l-~~~~~~~--~~~L~~L~L~~n~l~-~-~~~l~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 223 I-NVVRGPV--NVELTILKLQHNNLT-D-TAWLLNYPGLVEVDLSYNELEKIM-----------YHPFVKMQRLERLYIS 286 (597)
T ss_dssp C-CEEECSC--CSCCCEEECCSSCCC-C-CGGGGGCTTCSEEECCSSCCCEEE-----------SGGGTTCSSCCEEECT
T ss_pred c-ccccccc--CCCCCEEECCCCCCC-C-ChhhccCCCCCEEECCCCccCCCC-----------HHHhcCccCCCEEECC
Confidence 4 3444332 368999999887643 3 356888999999999988643321 1223456789999998
Q ss_pred cccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCc
Q 048833 522 EITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPA 599 (629)
Q Consensus 522 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 599 (629)
++ .+..+|... ..+++|+.|++++|. +..+|..+..+++|+.|+|++|. +..+| +..+++|+.|++++||-
T Consensus 287 ~N-~l~~l~~~~--~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 287 NN-RLVALNLYG--QPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp TS-CCCEEECSS--SCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred CC-CCCCCCccc--ccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence 85 566676655 668999999999985 66888888889999999999974 55565 56789999999999883
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=3.5e-21 Score=195.11 Aligned_cols=248 Identities=19% Similarity=0.211 Sum_probs=106.0
Q ss_pred cccEEEcCCCCcccccc-ccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCcc-ccccCcccEEEe
Q 048833 337 FLRVLNLSESSIEVCSR-KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKD-IKYLVNLRVLVL 414 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l 414 (629)
.|++|++++|.+..+|. .+.++++|++|++++|......|..++++++|++|++++| .+..+|.. ++.+++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEEC
Confidence 34444444444444433 3444444444444444211122233444444444444443 23333332 344444444444
Q ss_pred cCcccccCcc--cCCCCCCCCeEeecCCCCcchh-hhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccc
Q 048833 415 TTKQKSLQES--GIRSLGSLRSLKIFGCRDLEHL-FEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESL 491 (629)
Q Consensus 415 ~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l 491 (629)
++|.+...+. .+..+++|+.|++++|..+..+ +..+..+++|++|++++|......|..+..+++|++|++++|...
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 4444443332 3444444444444444322222 233444444444444444433333444444444444444444321
Q ss_pred cccccccccCCCCCCCCCCCCCceeeEeeccccCcccchh-hh-hcCCCCCccEEEecCCCCCc----cCCcCCCCCCCc
Q 048833 492 DLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQ-WL-LQGSTDTLRDLFIVSCPNFM----ALPRSLKDLEAL 565 (629)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~-~~~~~~~L~~L~l~~~~~~~----~l~~~~~~l~~L 565 (629)
..... .....++|+.|+++++. +..++. .+ .......++.++++++..-. .+|..+..+++|
T Consensus 212 ~~~~~-----------~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 212 LLLEI-----------FVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp THHHH-----------HHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred cchhh-----------hhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence 10000 00012344444444431 111110 00 00123445555555543211 345555666666
Q ss_pred CeeecccCccCccCCcCC-CCCCCcCeEeeeCCC
Q 048833 566 ETLVIARCPKLSSLPEGM-HHVTTLKLLTIGGCP 598 (629)
Q Consensus 566 ~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~ 598 (629)
++|++++| .++.+|..+ ..+++|++|++++|+
T Consensus 280 ~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 280 LELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 77777664 455666553 566667777766665
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=3.8e-20 Score=194.02 Aligned_cols=221 Identities=26% Similarity=0.343 Sum_probs=122.6
Q ss_pred ccccEEEcCCCCccccc-cccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCc-cccccCcccEEE
Q 048833 336 QFLRVLNLSESSIEVCS-RKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPK-DIKYLVNLRVLV 413 (629)
Q Consensus 336 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~ 413 (629)
+++++|++++|.+..++ ..+.++++|++|+|++|......|..+.++++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 34555555555555442 33555555555555555322222344555555555555554 2333332 245555555555
Q ss_pred ecCcccccCc-ccCCCCCCCCeEeecCCCCcchhhh-hCCCCCccceEecccCCCCccccccccCCCccceeeccccccc
Q 048833 414 LTTKQKSLQE-SGIRSLGSLRSLKIFGCRDLEHLFE-EIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESL 491 (629)
Q Consensus 414 l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l 491 (629)
+++|.+...+ ..+..+++|+.|++++|..+..++. .+..+++|+.|++++|. +..+|. +..+++|++|++++|.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~-- 229 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-LTPLVGLEELEMSGNH-- 229 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC-CTTCTTCCEEECTTSC--
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc-ccccccccEEECcCCc--
Confidence 5555544332 2344555555555555444443332 24455555555554443 333332 4444555555555442
Q ss_pred cccccccccCCCCCCCCCCCCCceeeEeeccccCcccc-hhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeec
Q 048833 492 DLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLEL-PQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVI 570 (629)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 570 (629)
+..+ |..+ ..+++|+.|++++|......|..+..+++|+.|+|
T Consensus 230 ----------------------------------l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 230 ----------------------------------FPEIRPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273 (452)
T ss_dssp ----------------------------------CSEECGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ----------------------------------CcccCcccc--cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence 2222 3344 56788888888888655555677888888999999
Q ss_pred ccCccCccCC-cCCCCCCCcCeEeeeCCC
Q 048833 571 ARCPKLSSLP-EGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 571 ~~c~~l~~lp-~~~~~l~~L~~L~l~~c~ 598 (629)
++| .++.+| ..+..+++|+.|++++||
T Consensus 274 ~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 274 AHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCC-cCCccChHHhccccCCCEEEccCCC
Confidence 886 555555 445778888888888887
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=8.1e-20 Score=202.26 Aligned_cols=331 Identities=19% Similarity=0.197 Sum_probs=175.4
Q ss_pred cceEEEEEcccCCcchhhhhccCCC--CceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccc-ccccCCCCc
Q 048833 284 SVRHLSFAAANASRNDFSSLLSDLG--RVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVC-SRKMGNLKH 360 (629)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~--~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~ 360 (629)
.++.+.+..+..... .+..+..++ +|+.|++++|........ .+..++.|++|++++|.+..+ |..+.++++
T Consensus 223 ~L~~L~L~~n~l~~~-~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTT-SNTTFLGLKWTNLTMLDLSYNNLNVVGND----SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297 (680)
T ss_dssp CCCEEECTTSCCCEE-CTTTTGGGGGSCCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSCCBSEECTTTTTTCTT
T ss_pred cccEEEccCCccccc-ChhHhhccCcCCCCEEECCCCCcCccCcc----cccCcccccEeeCCCCccCccChhhhcCCCC
Confidence 344555544443332 122233332 366666666555443322 245566666666666666543 234556666
Q ss_pred cceeecccCCCcc-----ccch----hhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccC---cccCCC
Q 048833 361 MRYLDLSRNSKIK-----KLPK----SICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQ---ESGIRS 428 (629)
Q Consensus 361 L~~L~l~~~~~~~-----~lp~----~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~---~~~~~~ 428 (629)
|++|++++|.... .+|. .+..+++|++|++++|......|..+..+++|++|++++|..... ...+..
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~ 377 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377 (680)
T ss_dssp CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcc
Confidence 6666665432111 2222 455566666666666543333344455666666666655542211 011111
Q ss_pred --CCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCcccc-ccccCCCccceeeccccccccccccc--------
Q 048833 429 --LGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLP-PAIKYLSSLENLYLARCESLDLNLNM-------- 497 (629)
Q Consensus 429 --l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~-------- 497 (629)
.++|+.|++++|......+..+..+++|+.|++++|.....+| ..+..+++|++|++++|.........
T Consensus 378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457 (680)
T ss_dssp GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence 1345555555554333334445555555555555544333333 33445555555555554322111000
Q ss_pred -------cccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccC-----C----cCCCC
Q 048833 498 -------EIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMAL-----P----RSLKD 561 (629)
Q Consensus 498 -------~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-----~----~~~~~ 561 (629)
.+...+........+++|+.|+++++ .+..++...+ ..+++|+.|++++|.. +.+ | ..+..
T Consensus 458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~-~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDML-EGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCC-GGGGSTTSTTSCCCTTTT
T ss_pred cchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhh-ccccccCEEeCCCCCc-cccchhhccCCcchhhcC
Confidence 00001112233455668888888875 4555654432 5678899999998853 332 1 23678
Q ss_pred CCCcCeeecccCccCccCCc-CCCCCCCcCeEeeeCCCccccccCCCCCCCCCcccCCCceeeCCccc
Q 048833 562 LEALETLVIARCPKLSSLPE-GMHHVTTLKLLTIGGCPALSERCKPPTGEDWPKISHIPQVYLDGEMI 628 (629)
Q Consensus 562 l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~v~~~~~~~ 628 (629)
+++|+.|++++| .++.+|. .+..+++|+.|++++|. ++. .....+....++..+.+.++.+
T Consensus 535 l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~----l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 535 LSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNN-LNT----LPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCC----CCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCC-CCc----CCHhHhCCCCCCCEEECCCCcC
Confidence 899999999986 5667775 47889999999998885 332 2222345567788888887764
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=6.9e-20 Score=191.39 Aligned_cols=221 Identities=25% Similarity=0.357 Sum_probs=133.0
Q ss_pred ccccEEEcCCCCccccc-cccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCc-cccccCcccEEE
Q 048833 336 QFLRVLNLSESSIEVCS-RKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPK-DIKYLVNLRVLV 413 (629)
Q Consensus 336 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~ 413 (629)
+.+++|++++|.+..++ ..+.++++|++|+|++|......+..+.++++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 45666666666666554 34666666677776666322233355666666666666665 3444443 456666666666
Q ss_pred ecCcccccCc-ccCCCCCCCCeEeecCCCCcchhhh-hCCCCCccceEecccCCCCccccccccCCCccceeeccccccc
Q 048833 414 LTTKQKSLQE-SGIRSLGSLRSLKIFGCRDLEHLFE-EIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESL 491 (629)
Q Consensus 414 l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l 491 (629)
+++|.+...+ ..+..+++|+.|++++|..+..++. .+..+++|+.|++++|. ++.+|. +..+++|++|++++|.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~-- 218 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGNH-- 218 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTSC--
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCCc--
Confidence 6666655433 2455666666666666554444443 45566666666666553 444543 5556666666666553
Q ss_pred cccccccccCCCCCCCCCCCCCceeeEeeccccCcccc-hhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeec
Q 048833 492 DLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLEL-PQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVI 570 (629)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 570 (629)
+..+ |..+ ..+++|+.|++++|......+..+..+++|+.|+|
T Consensus 219 ----------------------------------l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 219 ----------------------------------LSAIRPGSF--QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp ----------------------------------CCEECTTTT--TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred ----------------------------------cCccChhhh--ccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence 2222 2223 45677778888777644445566777788888888
Q ss_pred ccCccCccCC-cCCCCCCCcCeEeeeCCC
Q 048833 571 ARCPKLSSLP-EGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 571 ~~c~~l~~lp-~~~~~l~~L~~L~l~~c~ 598 (629)
++| .++.+| ..+..+++|+.|++++||
T Consensus 263 ~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 263 AHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 875 444544 345677788888887777
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=1.1e-19 Score=178.27 Aligned_cols=128 Identities=19% Similarity=0.128 Sum_probs=53.6
Q ss_pred cccEEEcCCCCcccccc-ccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccC-CccccccCcccEEEe
Q 048833 337 FLRVLNLSESSIEVCSR-KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEEL-PKDIKYLVNLRVLVL 414 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l 414 (629)
.|++|+++++.+..++. .+..+++|++|++++|......|..+.++++|++|++++|..+..+ |..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44555555555444432 2444455555555444222222344444555555555444323333 333444444444444
Q ss_pred cCcccccC-cccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccC
Q 048833 415 TTKQKSLQ-ESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESC 464 (629)
Q Consensus 415 ~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 464 (629)
++|.+... +..+..+++|+.|++++|......+..++.+++|+.|++++|
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 44444332 223344444444444444322222222334444444444433
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=3.4e-19 Score=195.79 Aligned_cols=133 Identities=19% Similarity=0.234 Sum_probs=94.8
Q ss_pred CCCCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccc-cCCC
Q 048833 280 SIPKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRK-MGNL 358 (629)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l 358 (629)
.+|..++.+.+..+.++.. .+..+..+++|+.|++++|.+...... .|..+++|++|+|++|.++.+|.. |.++
T Consensus 49 ~lp~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp SSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred CCCcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 3567788888888777654 235677888888888888877655443 367788888888888888877754 6788
Q ss_pred CccceeecccCCCccccch-hhccCCCccEeccCCccccc-cCCccccccCcccEEEecCcc
Q 048833 359 KHMRYLDLSRNSKIKKLPK-SICELQSLETLDLAGCLELE-ELPKDIKYLVNLRVLVLTTKQ 418 (629)
Q Consensus 359 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~ 418 (629)
++|++|++++| .+..+|. .|+++++|++|++++|.... .+|..++.+++|++|++++|.
T Consensus 124 ~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 124 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 88888888877 4555553 47788888888888774322 356667777777777776654
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=1.1e-19 Score=180.21 Aligned_cols=243 Identities=18% Similarity=0.163 Sum_probs=186.7
Q ss_pred cEEEcCCCCccccccccCCCCccceeecccCCCccccchh-hccCCCccEeccCCccccccC---CccccccCcccEEEe
Q 048833 339 RVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKS-ICELQSLETLDLAGCLELEEL---PKDIKYLVNLRVLVL 414 (629)
Q Consensus 339 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~l---p~~i~~l~~L~~L~l 414 (629)
+.++.+++.++.+|..+. ++|++|++++| .+..+|.. +.++++|++|++++|. +..+ |..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEEC
Confidence 567888888999988654 68999999988 56677765 6899999999999974 4433 566778999999999
Q ss_pred cCcccccCcccCCCCCCCCeEeecCCCCcchhh--hhCCCCCccceEecccCCCCccccccccCCCccceeecccccccc
Q 048833 415 TTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLF--EEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLD 492 (629)
Q Consensus 415 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~ 492 (629)
++|.+...+..+..+++|++|++++|.. ..++ ..+..+++|+.|++++|......+..+..+++|++|++++|....
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 9999887777788999999999999874 3333 468889999999999987666677778889999999999874221
Q ss_pred ccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeeccc
Q 048833 493 LNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIAR 572 (629)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~ 572 (629)
..+|..+ ..+++|+.|++++|......|..+..+++|++|++++
T Consensus 165 ----------------------------------~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 165 ----------------------------------NFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp ----------------------------------GEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ----------------------------------ccchhHH--hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 0122233 5678999999999965555578899999999999999
Q ss_pred CccCccCC-cCCCCCCCcCeEeeeCCCccccccCCCCCCCCCcc-cCCCceeeCCccc
Q 048833 573 CPKLSSLP-EGMHHVTTLKLLTIGGCPALSERCKPPTGEDWPKI-SHIPQVYLDGEMI 628 (629)
Q Consensus 573 c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i-~~l~~v~~~~~~~ 628 (629)
|. ++.++ ..+..+++|+.|++++|+-..... ..+..+ .++..+.+.++.+
T Consensus 209 N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 209 NN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-----QELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSS-----SSCCCCCTTCCEEECTTCCE
T ss_pred Cc-cCccChhhccCcccCCEeECCCCCCcccCH-----HHHHhhhccCCEEEccCCCe
Confidence 75 55544 467889999999999997322211 122223 3677788887764
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=5.6e-19 Score=189.91 Aligned_cols=255 Identities=21% Similarity=0.246 Sum_probs=196.0
Q ss_pred ceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCcccee
Q 048833 285 VRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYL 364 (629)
Q Consensus 285 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 364 (629)
++.+.+..+.+.. ++..+. ++|+.|.+++|.+..... .+++|++|++++|.+..+|. .+++|++|
T Consensus 42 l~~L~ls~n~L~~--lp~~l~--~~L~~L~L~~N~l~~lp~--------~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 42 NAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp CCEEECCSSCCSC--CCSCCC--TTCSEEEECSCCCSCCCC--------CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CcEEEecCCCcCc--cChhhC--CCCcEEEecCCCCCCCCC--------cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 4566666666553 233333 789999999988775443 46789999999999998887 67899999
Q ss_pred ecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcc
Q 048833 365 DLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLE 444 (629)
Q Consensus 365 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 444 (629)
++++| .+..+|. .+++|+.|++++| .+..+|.. +++|++|++++|.+...+. .+++|+.|++++|. +.
T Consensus 107 ~Ls~N-~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~ 174 (622)
T 3g06_A 107 SIFSN-PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ-LT 174 (622)
T ss_dssp EECSC-CCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CS
T ss_pred ECcCC-cCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC-CC
Confidence 99987 5777776 6788999999987 57778864 4889999999998876543 45789999998886 44
Q ss_pred hhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeecccc
Q 048833 445 HLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEIT 524 (629)
Q Consensus 445 ~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 524 (629)
.+| ..+++|+.|++++|. ++.+|.. +++|+.|++++|....+. ...++|+.|+++++
T Consensus 175 ~l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~l~~l~---------------~~~~~L~~L~Ls~N- 231 (622)
T 3g06_A 175 SLP---MLPSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLP---------------ALPSGLKELIVSGN- 231 (622)
T ss_dssp CCC---CCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSSCC---------------CCCTTCCEEECCSS-
T ss_pred CCc---ccCCCCcEEECCCCC-CCCCCCc---cchhhEEECcCCcccccC---------------CCCCCCCEEEccCC-
Confidence 455 457889999998865 5566653 478999999887543221 12368999999886
Q ss_pred CcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCc
Q 048833 525 QLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPA 599 (629)
Q Consensus 525 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 599 (629)
.++.+| ..+++|+.|++++| .++.+|. .+++|+.|+|++| .++.+|..+..+++|+.|++++|+-
T Consensus 232 ~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 232 RLTSLP-----VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCSCCC-----CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred ccCcCC-----CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 666666 45689999999998 4777886 6789999999996 6778998899999999999999984
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=187.14 Aligned_cols=254 Identities=19% Similarity=0.205 Sum_probs=195.5
Q ss_pred CCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccc-cccCCCCccceeecccCCCccccchh-hccCCCc
Q 048833 308 GRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCS-RKMGNLKHMRYLDLSRNSKIKKLPKS-ICELQSL 385 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L 385 (629)
++++.|++++|.+...... .+..+++|++|++++|.+..++ ..+.++++|++|++++| .+..+|.. ++++++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNS----DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTC
T ss_pred ccCcEEECCCCcCcccCHH----HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccC
Confidence 5899999999887765442 3778999999999999999775 45899999999999988 56667665 8899999
Q ss_pred cEeccCCccccccCCc--cccccCcccEEEecCcc-cccC-cccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEec
Q 048833 386 ETLDLAGCLELEELPK--DIKYLVNLRVLVLTTKQ-KSLQ-ESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSI 461 (629)
Q Consensus 386 ~~L~l~~~~~~~~lp~--~i~~l~~L~~L~l~~~~-~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 461 (629)
++|++++| .+..+|. .+..+++|++|++++|. +... +..+..+++|+.|++++|......|..+..+++|++|++
T Consensus 127 ~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 127 TFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp SEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 99999997 5667776 68899999999999984 4433 457889999999999999876666888999999999999
Q ss_pred ccCCCCcccccc-ccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeecccc----CcccchhhhhcC
Q 048833 462 ESCPRLISLPPA-IKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEIT----QLLELPQWLLQG 536 (629)
Q Consensus 462 ~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~~~ 536 (629)
++|. ++.+|.. +..+++|++|++++|......... .........++.+.+.++. .+..+|.++ .
T Consensus 206 ~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~ 274 (353)
T 2z80_A 206 HMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSE--------LSTGETNSLIKKFTFRNVKITDESLFQVMKLL--N 274 (353)
T ss_dssp ECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------CCCCCCEEEEESCBCCHHHHHHHHHHH--H
T ss_pred CCCc-cccchhhhhhhcccccEEECCCCccccccccc--------cccccccchhhccccccccccCcchhhhHHHH--h
Confidence 9876 4556654 446899999999998644322110 0111223355666665542 233566666 5
Q ss_pred CCCCccEEEecCCCCCccCCcC-CCCCCCcCeeecccCccCccC
Q 048833 537 STDTLRDLFIVSCPNFMALPRS-LKDLEALETLVIARCPKLSSL 579 (629)
Q Consensus 537 ~~~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~c~~l~~l 579 (629)
.+++|+.|++++|. ++.+|.. +..+++|++|++++|+.....
T Consensus 275 ~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 275 QISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 78999999999985 6688877 489999999999998655443
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=9e-20 Score=181.57 Aligned_cols=253 Identities=13% Similarity=0.071 Sum_probs=190.2
Q ss_pred hHHHHHhhhcCccccEEEcCCCCccccc-cccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccc
Q 048833 325 QSFVESCISKSQFLRVLNLSESSIEVCS-RKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDI 403 (629)
Q Consensus 325 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i 403 (629)
...+...+..+++|++|++++|.+..++ ..+..+++|++|++++|. +...++ +..+++|++|++++| .+..+|
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~--- 96 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELL--- 96 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSS-EEEEEE---
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCC-cccccc---
Confidence 3344455667778999999999888765 468888999999998874 554544 788899999999887 455544
Q ss_pred cccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccc-cCCCccce
Q 048833 404 KYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAI-KYLSSLEN 482 (629)
Q Consensus 404 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~ 482 (629)
..++|++|++++|.+...+. ..+++|+.|++++|......+..++.+++|+.|++++|......+..+ ..+++|++
T Consensus 97 -~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 97 -VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (317)
T ss_dssp -ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred -CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCE
Confidence 44889999999888776543 346789999999887655555577888999999998876555445554 46889999
Q ss_pred eeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCC
Q 048833 483 LYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDL 562 (629)
Q Consensus 483 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l 562 (629)
|++++|...... .....++|+.|+++++ .+..+|..+ ..+++|+.|++++|. ++.+|..+..+
T Consensus 174 L~L~~N~l~~~~-------------~~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~L~~N~-l~~l~~~~~~l 236 (317)
T 3o53_A 174 LNLQYNFIYDVK-------------GQVVFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNNK-LVLIEKALRFS 236 (317)
T ss_dssp EECTTSCCCEEE-------------CCCCCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTSC-CCEECTTCCCC
T ss_pred EECCCCcCcccc-------------cccccccCCEEECCCC-cCCcchhhh--cccCcccEEECcCCc-ccchhhHhhcC
Confidence 999988643321 1123568888888875 566676665 567899999999984 67889889999
Q ss_pred CCcCeeecccCccC-ccCCcCCCCCCCcCeEeeeCCCccccc
Q 048833 563 EALETLVIARCPKL-SSLPEGMHHVTTLKLLTIGGCPALSER 603 (629)
Q Consensus 563 ~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~~ 603 (629)
++|+.|++++|+.. ..+|..+..+++|+.|++.+|+.++..
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 99999999998766 467777788899999999987766643
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=7.8e-20 Score=179.30 Aligned_cols=179 Identities=22% Similarity=0.243 Sum_probs=145.5
Q ss_pred CCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccc-ccccCCCCccceeecccCCCcccc-chhhccCCC
Q 048833 307 LGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVC-SRKMGNLKHMRYLDLSRNSKIKKL-PKSICELQS 384 (629)
Q Consensus 307 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~ 384 (629)
.++++.|.++++.+...... .+..+++|++|++++|.+..+ |..+..+++|++|++++|..+..+ |..+..+++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CTTCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCcCCccCHH----HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 46889999998887765433 367889999999999999877 567889999999999988646655 677889999
Q ss_pred ccEeccCCccccccCCccccccCcccEEEecCcccccCcc-cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEeccc
Q 048833 385 LETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIES 463 (629)
Q Consensus 385 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 463 (629)
|++|++++|......|..+..+++|++|++++|.+...+. .+..+++|+.|++++|......+..+..+++|+.|++++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence 9999999985444456778899999999999998876654 478899999999999875433344588899999999999
Q ss_pred CCCCccccccccCCCccceeeccccc
Q 048833 464 CPRLISLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 464 ~~~~~~lp~~~~~l~~L~~L~l~~~~ 489 (629)
|......|..+..+++|++|++++|.
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcccccCHhHccCcccccEeeCCCCc
Confidence 87666668888889999999998874
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=1.2e-20 Score=187.42 Aligned_cols=243 Identities=15% Similarity=0.183 Sum_probs=163.9
Q ss_pred CCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccc--cccccC-------CCCccceeecccCCCccccc
Q 048833 306 DLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEV--CSRKMG-------NLKHMRYLDLSRNSKIKKLP 376 (629)
Q Consensus 306 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~~~~-------~l~~L~~L~l~~~~~~~~lp 376 (629)
..++|+.+.+++|.+ ..+..+.. .|+.|+++++.+.. +|..+. ++++|++|++++|.....+|
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~-------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTD-------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHH-------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred cCCCceeEeeccccc-ccHHHHHH-------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 334455555666655 33332211 17777888877753 444443 67888888888875444677
Q ss_pred hhh--ccCCCccEeccCCccccccCCcccccc-----CcccEEEecCcccccCc-ccCCCCCCCCeEeecCCCCcch--h
Q 048833 377 KSI--CELQSLETLDLAGCLELEELPKDIKYL-----VNLRVLVLTTKQKSLQE-SGIRSLGSLRSLKIFGCRDLEH--L 446 (629)
Q Consensus 377 ~~~--~~l~~L~~L~l~~~~~~~~lp~~i~~l-----~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~ 446 (629)
..+ +.+++|++|++++| .+..+|..++.+ ++|++|++++|.+...+ ..++.+++|++|++++|..... +
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 765 78888888888887 455557777766 88888888888877665 5778888888888888875443 3
Q ss_pred hhhC--CCCCccceEecccCCCCc--ccc-ccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeec
Q 048833 447 FEEI--DQLSVLRTLSIESCPRLI--SLP-PAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIM 521 (629)
Q Consensus 447 ~~~~--~~l~~L~~L~l~~~~~~~--~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 521 (629)
+..+ ..+++|++|++++|.... .++ ..+..+++|++|++++|......
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------------------------- 244 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA--------------------------- 244 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---------------------------
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc---------------------------
Confidence 4444 778888888888775331 222 22356788888888877422110
Q ss_pred cccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCC
Q 048833 522 EITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 522 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 598 (629)
|... -..+++|+.|++++|. ++.+|..+. ++|++|++++| .++.+|. +..+++|++|++++|+
T Consensus 245 --------~~~~-~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 245 --------GAPS-CDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp --------CCSC-CCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred --------chhh-hhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 0000 0235788888888875 567777666 78888999885 5666776 7788888888888887
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=1.3e-20 Score=187.60 Aligned_cols=270 Identities=16% Similarity=0.124 Sum_probs=194.2
Q ss_pred hhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhcc
Q 048833 302 SLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICE 381 (629)
Q Consensus 302 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 381 (629)
..+..+++|+.|++++|.+...... .+..+++|++|++++|.+...+. +..+++|++|++++| .+..+| .
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~ 97 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----V 97 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHH----HHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----E
T ss_pred HHhccCCCCCEEECcCCccCcCCHH----HhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----C
Confidence 4445667899999998877765433 36788899999999999887665 888899999999987 455554 3
Q ss_pred CCCccEeccCCccccccCCccccccCcccEEEecCcccccCc-ccCCCCCCCCeEeecCCCCcchhhhhC-CCCCccceE
Q 048833 382 LQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQE-SGIRSLGSLRSLKIFGCRDLEHLFEEI-DQLSVLRTL 459 (629)
Q Consensus 382 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L 459 (629)
+++|++|++++| .+..++. ..+++|++|++++|.+...+ ..+..+++|+.|++++|......+..+ ..+++|+.|
T Consensus 98 ~~~L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 98 GPSIETLHAANN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp CTTCCEEECCSS-CCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCCcCEEECCCC-ccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 488999999987 4555543 34788999999998887654 367788899999999887655445555 468899999
Q ss_pred ecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCC
Q 048833 460 SIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTD 539 (629)
Q Consensus 460 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 539 (629)
++++|. ++.+|.. ..+++|++|++++|...... ......++|+.|+++++ .+..+|..+ ..++
T Consensus 175 ~L~~N~-l~~~~~~-~~l~~L~~L~Ls~N~l~~l~------------~~~~~l~~L~~L~L~~N-~l~~l~~~~--~~l~ 237 (317)
T 3o53_A 175 NLQYNF-IYDVKGQ-VVFAKLKTLDLSSNKLAFMG------------PEFQSAAGVTWISLRNN-KLVLIEKAL--RFSQ 237 (317)
T ss_dssp ECTTSC-CCEEECC-CCCTTCCEEECCSSCCCEEC------------GGGGGGTTCSEEECTTS-CCCEECTTC--CCCT
T ss_pred ECCCCc-Ccccccc-cccccCCEEECCCCcCCcch------------hhhcccCcccEEECcCC-cccchhhHh--hcCC
Confidence 998875 4555543 35888999999988543322 11234568899999886 666788766 6789
Q ss_pred CccEEEecCCCCC-ccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCccc
Q 048833 540 TLRDLFIVSCPNF-MALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPALS 601 (629)
Q Consensus 540 ~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 601 (629)
+|+.|++++|... ..+|.++..+++|+.|++.+|+.++..+..-...+.+....-..|..+.
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 9999999999865 4677888899999999999887776544322222333333333455443
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=2.1e-18 Score=189.53 Aligned_cols=129 Identities=21% Similarity=0.191 Sum_probs=108.9
Q ss_pred CCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccccc-ccCCCCccceeecccCCCccccc-hhhccCCCc
Q 048833 308 GRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSR-KMGNLKHMRYLDLSRNSKIKKLP-KSICELQSL 385 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L 385 (629)
+.++.|++++|.+...... .|..+++|++|+|++|.++.+|+ .|.++++|++|+|++| .+..+| ..|.++++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCC
Confidence 4799999999988876543 37899999999999999998876 4899999999999998 567666 468999999
Q ss_pred cEeccCCccccccCCc-cccccCcccEEEecCcccccC--cccCCCCCCCCeEeecCCCC
Q 048833 386 ETLDLAGCLELEELPK-DIKYLVNLRVLVLTTKQKSLQ--ESGIRSLGSLRSLKIFGCRD 442 (629)
Q Consensus 386 ~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~ 442 (629)
++|++++| .+..+|. .++.+++|++|++++|.+... +..++.+++|++|++++|..
T Consensus 127 ~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 127 QKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 99999998 5666664 589999999999999988643 45678899999999988753
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1.7e-19 Score=190.16 Aligned_cols=237 Identities=14% Similarity=0.071 Sum_probs=176.4
Q ss_pred hcCccccEEEcCCCCccccc-cccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccE
Q 048833 333 SKSQFLRVLNLSESSIEVCS-RKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRV 411 (629)
Q Consensus 333 ~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 411 (629)
..+++|++|++++|.+..++ ..+..+++|++|+|++|. +...++ ++.+++|++|+|++| .+..+| ..++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELL----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEE----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCC----CCCCcCE
Confidence 34457889999988888765 468888899999998874 544444 788889999999887 455554 3388889
Q ss_pred EEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCcccccccc-CCCccceeecccccc
Q 048833 412 LVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIK-YLSSLENLYLARCES 490 (629)
Q Consensus 412 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~ 490 (629)
|++++|.+...+. ..+++|+.|++++|......|..++.+++|+.|++++|......|..+. .+++|++|++++|..
T Consensus 104 L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 104 LHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp EECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred EECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9998888776543 3467889999988886665666788888999999988876665666665 788999999988854
Q ss_pred ccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeec
Q 048833 491 LDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVI 570 (629)
Q Consensus 491 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 570 (629)
.... ....+++|+.|+++++ .+..+|..+ ..+++|+.|++++|. ++.+|..+..+++|+.|++
T Consensus 182 ~~~~-------------~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 182 YDVK-------------GQVVFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDL 244 (487)
T ss_dssp CEEE-------------CCCCCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEEC
T ss_pred cccc-------------ccccCCCCCEEECCCC-CCCCCCHhH--cCCCCccEEEecCCc-CcccchhhccCCCCCEEEc
Confidence 3221 1123567888888775 556666655 467889999999875 6678888888899999999
Q ss_pred ccCccC-ccCCcCCCCCCCcCeEeee
Q 048833 571 ARCPKL-SSLPEGMHHVTTLKLLTIG 595 (629)
Q Consensus 571 ~~c~~l-~~lp~~~~~l~~L~~L~l~ 595 (629)
++|+.. ..+|..+..++.|+.+++.
T Consensus 245 ~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCcCcchHHHHHhCCCCcEEecc
Confidence 987665 3566667778888888776
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.3e-18 Score=182.28 Aligned_cols=202 Identities=22% Similarity=0.221 Sum_probs=133.0
Q ss_pred CCCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccc-cCCCC
Q 048833 281 IPKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRK-MGNLK 359 (629)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~ 359 (629)
++..++.+.+..+.+... .+..+..+++|+.|++++|.+..... ..|..+++|++|++++|.+..+|.. +..++
T Consensus 73 ~~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEV----GAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp CCTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred CCCCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcCh----hhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 345667777766665543 23456677777777777766654432 2356677777777777777766654 66677
Q ss_pred ccceeecccCCCccccc-hhhccCCCccEeccCCccccccCCc-cccccCcccEEEecCcccccCcccCCCCCCCCeEee
Q 048833 360 HMRYLDLSRNSKIKKLP-KSICELQSLETLDLAGCLELEELPK-DIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKI 437 (629)
Q Consensus 360 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 437 (629)
+|++|++++|. +..+| ..+.++++|+.|++++|..+..+|. .+..+++|++|++++|.+...+ .+..+++|+.|++
T Consensus 148 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 148 KLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEM 225 (452)
T ss_dssp TCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEEC
T ss_pred CCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEEC
Confidence 77777777663 44444 3566777777777777666666654 3567777777777777766553 4666777777777
Q ss_pred cCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccc
Q 048833 438 FGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 489 (629)
++|......+..+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 7776555556667777777777777766555555666777777777777764
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=1.6e-18 Score=180.97 Aligned_cols=203 Identities=19% Similarity=0.170 Sum_probs=140.6
Q ss_pred CCCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccccc-ccCCCC
Q 048833 281 IPKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSR-KMGNLK 359 (629)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~ 359 (629)
++..++.+.+..+.+... ....+..+++|+.|++++|.+..... ..|..+++|++|++++|.+..+|. .+..++
T Consensus 62 ~~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEI----GAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp CCTTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECG----GGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred CCCCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccCh----hhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 345667777777666554 23456777788888887776665443 236677778888888887777765 367777
Q ss_pred ccceeecccCCCccccc-hhhccCCCccEeccCCccccccCCc-cccccCcccEEEecCcccccCcccCCCCCCCCeEee
Q 048833 360 HMRYLDLSRNSKIKKLP-KSICELQSLETLDLAGCLELEELPK-DIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKI 437 (629)
Q Consensus 360 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 437 (629)
+|++|++++|. +..+| ..+.++++|++|++++|..+..++. .+..+++|++|++++|.+...+ .+..+++|+.|++
T Consensus 137 ~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 137 KLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDL 214 (440)
T ss_dssp SCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEEC
T ss_pred cCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEEC
Confidence 88888887764 44444 3577778888888877666666654 4677778888888877776554 4677777888888
Q ss_pred cCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeecccccc
Q 048833 438 FGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCES 490 (629)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 490 (629)
++|......+..+..+++|+.|++++|......+..+..+++|++|++++|..
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 77765555566777777888888877665555556677777788888877643
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=8.7e-18 Score=175.25 Aligned_cols=273 Identities=22% Similarity=0.238 Sum_probs=146.9
Q ss_pred CCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCcc
Q 048833 282 PKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHM 361 (629)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L 361 (629)
++.++.+.+..+..... + ..+++|+.|++++|.+..... ..+.|++|++++|.+..+| .+.++++|
T Consensus 90 ~~~L~~L~l~~n~l~~l--p---~~~~~L~~L~l~~n~l~~l~~--------~~~~L~~L~L~~n~l~~lp-~~~~l~~L 155 (454)
T 1jl5_A 90 PPHLESLVASCNSLTEL--P---ELPQSLKSLLVDNNNLKALSD--------LPPLLEYLGVSNNQLEKLP-ELQNSSFL 155 (454)
T ss_dssp CTTCSEEECCSSCCSSC--C---CCCTTCCEEECCSSCCSCCCS--------CCTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred cCCCCEEEccCCcCCcc--c---cccCCCcEEECCCCccCcccC--------CCCCCCEEECcCCCCCCCc-ccCCCCCC
Confidence 45667777666655442 2 123667777777666554221 1146777777777777766 46777777
Q ss_pred ceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCC
Q 048833 362 RYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 362 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 441 (629)
++|++++| .+..+|..+ .+|++|++++| .+..+| .++.+++|++|++++|.+...+.. .++|+.|++++|.
T Consensus 156 ~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 156 KIIDVDNN-SLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNI 226 (454)
T ss_dssp CEEECCSS-CCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSC
T ss_pred CEEECCCC-cCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCc
Confidence 77777766 355555432 46777777766 455566 467777777777777766544322 2466677776664
Q ss_pred CcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccc------cccCCCCCCCCCCCCCce
Q 048833 442 DLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNM------EIEGEGSHHDRKNTRPHL 515 (629)
Q Consensus 442 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~L 515 (629)
. ..+| .++.+++|+.|++++|. +..+|.. +++|++|++++|......... .+.... ........++|
T Consensus 227 l-~~lp-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~-l~~l~~~~~~L 299 (454)
T 1jl5_A 227 L-EELP-ELQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENI-FSGLSELPPNL 299 (454)
T ss_dssp C-SSCC-CCTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSEESCCCTTC
T ss_pred C-Cccc-ccCCCCCCCEEECCCCc-CCccccc---ccccCEEECCCCcccccCcccCcCCEEECcCCc-cCcccCcCCcC
Confidence 3 3455 36666667777776653 3344432 245666666655422211000 000000 00000011345
Q ss_pred eeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeee
Q 048833 516 RRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIG 595 (629)
Q Consensus 516 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 595 (629)
+.|+++++ .+..++. ..++|+.|++++|. ++.+|.. +++|+.|++++| .++.+|. .+++|++|+++
T Consensus 300 ~~L~l~~N-~l~~i~~-----~~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~ 365 (454)
T 1jl5_A 300 YYLNASSN-EIRSLCD-----LPPSLEELNVSNNK-LIELPAL---PPRLERLIASFN-HLAEVPE---LPQNLKQLHVE 365 (454)
T ss_dssp CEEECCSS-CCSEECC-----CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTCCEEECC
T ss_pred CEEECcCC-cCCcccC-----CcCcCCEEECCCCc-ccccccc---CCcCCEEECCCC-ccccccc---hhhhccEEECC
Confidence 55555443 2222221 11366666666654 4445543 466777777664 4555665 35667777776
Q ss_pred CCC
Q 048833 596 GCP 598 (629)
Q Consensus 596 ~c~ 598 (629)
+|+
T Consensus 366 ~N~ 368 (454)
T 1jl5_A 366 YNP 368 (454)
T ss_dssp SSC
T ss_pred CCC
Confidence 665
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=6.3e-18 Score=176.30 Aligned_cols=262 Identities=20% Similarity=0.218 Sum_probs=144.7
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMR 362 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 362 (629)
..++.+.+..+..... + .+..+++|+.|++++|.+...+. ...+|++|++++|.+..+| .+..+++|+
T Consensus 131 ~~L~~L~L~~n~l~~l--p-~~~~l~~L~~L~l~~N~l~~lp~--------~~~~L~~L~L~~n~l~~l~-~~~~l~~L~ 198 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKL--P-ELQNSSFLKIIDVDNNSLKKLPD--------LPPSLEFIAAGNNQLEELP-ELQNLPFLT 198 (454)
T ss_dssp TTCCEEECCSSCCSSC--C-CCTTCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSSCC-CCTTCTTCC
T ss_pred CCCCEEECcCCCCCCC--c-ccCCCCCCCEEECCCCcCcccCC--------CcccccEEECcCCcCCcCc-cccCCCCCC
Confidence 4555555555554432 2 35566666666666655443221 1235666666666666555 455666666
Q ss_pred eeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCC
Q 048833 363 YLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRD 442 (629)
Q Consensus 363 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 442 (629)
+|++++| .+..+|... ++|++|++++| .+..+| .++.+++|++|++++|.+...+. .+++|+.|++++|..
T Consensus 199 ~L~l~~N-~l~~l~~~~---~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 199 AIYADNN-SLKKLPDLP---LSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYL 269 (454)
T ss_dssp EEECCSS-CCSSCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCC
T ss_pred EEECCCC-cCCcCCCCc---CcccEEECcCC-cCCccc-ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcc
Confidence 6666655 344444322 35666666665 344555 35666666666666665554332 235666666666542
Q ss_pred cchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeecc
Q 048833 443 LEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIME 522 (629)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 522 (629)
..+|.. +++|+.|++++|. ++.+|.. .++|+.|++++|..... .....+|+.|++++
T Consensus 270 -~~l~~~---~~~L~~L~ls~N~-l~~l~~~---~~~L~~L~l~~N~l~~i---------------~~~~~~L~~L~Ls~ 326 (454)
T 1jl5_A 270 -TDLPEL---PQSLTFLDVSENI-FSGLSEL---PPNLYYLNASSNEIRSL---------------CDLPPSLEELNVSN 326 (454)
T ss_dssp -SCCCCC---CTTCCEEECCSSC-CSEESCC---CTTCCEEECCSSCCSEE---------------CCCCTTCCEEECCS
T ss_pred -cccCcc---cCcCCEEECcCCc-cCcccCc---CCcCCEEECcCCcCCcc---------------cCCcCcCCEEECCC
Confidence 233332 3566666666554 3333321 24566666666532211 01124899999988
Q ss_pred ccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCc--cCCcCCCCC-------------C
Q 048833 523 ITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLS--SLPEGMHHV-------------T 587 (629)
Q Consensus 523 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l-------------~ 587 (629)
+ .+..+|. .+++|+.|++++|. ++.+|. .+++|++|++++|.... .+|..+..+ +
T Consensus 327 N-~l~~lp~-----~~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~ 396 (454)
T 1jl5_A 327 N-KLIELPA-----LPPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396 (454)
T ss_dssp S-CCSCCCC-----CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------
T ss_pred C-ccccccc-----cCCcCCEEECCCCc-cccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccC
Confidence 5 5566664 35889999999884 667887 57899999999976555 677777766 7
Q ss_pred CcCeEeeeCCC
Q 048833 588 TLKLLTIGGCP 598 (629)
Q Consensus 588 ~L~~L~l~~c~ 598 (629)
+|+.|++++|+
T Consensus 397 ~L~~L~ls~N~ 407 (454)
T 1jl5_A 397 NLKQLHVETNP 407 (454)
T ss_dssp -----------
T ss_pred cCCEEECCCCc
Confidence 89999999987
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.6e-19 Score=190.26 Aligned_cols=239 Identities=14% Similarity=0.107 Sum_probs=181.2
Q ss_pred CCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCc
Q 048833 306 DLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSL 385 (629)
Q Consensus 306 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 385 (629)
.+++|+.|++++|.+..... ..+..+++|++|++++|.+...++ +..+++|++|++++| .+..+|. .++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISA----ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSI 101 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCG----GGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTC
T ss_pred cCCCccEEEeeCCcCCCCCH----HHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCc
Confidence 34489999999888776543 337788999999999999886665 888999999999987 5665553 3889
Q ss_pred cEeccCCccccccCCccccccCcccEEEecCcccccC-cccCCCCCCCCeEeecCCCCcchhhhhCC-CCCccceEeccc
Q 048833 386 ETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQ-ESGIRSLGSLRSLKIFGCRDLEHLFEEID-QLSVLRTLSIES 463 (629)
Q Consensus 386 ~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~ 463 (629)
++|++++| .+..+|. ..+++|+.|++++|.+... +..++.+++|+.|++++|......|..+. .+++|+.|++++
T Consensus 102 ~~L~L~~N-~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 102 ETLHAANN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CEEECCSS-CCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CEEECcCC-cCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 99999987 4555543 3568899999999988765 44677889999999999886665666665 789999999988
Q ss_pred CCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccE
Q 048833 464 CPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRD 543 (629)
Q Consensus 464 ~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 543 (629)
|. ++.+|. ...+++|+.|++++|.....+ ......++|+.|+++++ .+..+|.++ ..+++|+.
T Consensus 179 N~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~------------~~~~~l~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~ 241 (487)
T 3oja_A 179 NF-IYDVKG-QVVFAKLKTLDLSSNKLAFMG------------PEFQSAAGVTWISLRNN-KLVLIEKAL--RFSQNLEH 241 (487)
T ss_dssp SC-CCEEEC-CCCCTTCCEEECCSSCCCEEC------------GGGGGGTTCSEEECTTS-CCCEECTTC--CCCTTCCE
T ss_pred Cc-cccccc-cccCCCCCEEECCCCCCCCCC------------HhHcCCCCccEEEecCC-cCcccchhh--ccCCCCCE
Confidence 76 445554 345889999999988643322 11234568899999885 566788776 67899999
Q ss_pred EEecCCCCC-ccCCcCCCCCCCcCeeecccCc
Q 048833 544 LFIVSCPNF-MALPRSLKDLEALETLVIARCP 574 (629)
Q Consensus 544 L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~c~ 574 (629)
|++++|... ..+|.++..++.|+.+.+..+.
T Consensus 242 L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp EECTTCCBCHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EEcCCCCCcCcchHHHHHhCCCCcEEeccccc
Confidence 999999765 3677778889999999887443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=6.3e-20 Score=182.24 Aligned_cols=249 Identities=18% Similarity=0.199 Sum_probs=177.0
Q ss_pred hcCccccEEEcCCCCccccccccCCCCccceeecccCCCc-cccchhhc-------cCCCccEeccCCccccccCCccc-
Q 048833 333 SKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKI-KKLPKSIC-------ELQSLETLDLAGCLELEELPKDI- 403 (629)
Q Consensus 333 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~~lp~~~~-------~l~~L~~L~l~~~~~~~~lp~~i- 403 (629)
...+.|+.|+++++.+ .+|..+... |+.|++++|... ..+|..+. ++++|++|++++|.....+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 3456788888888888 777665543 888888877431 24666555 68889999998886555778776
Q ss_pred -cccCcccEEEecCcccccCcccCCCC-----CCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCcc--ccccc-
Q 048833 404 -KYLVNLRVLVLTTKQKSLQESGIRSL-----GSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLIS--LPPAI- 474 (629)
Q Consensus 404 -~~l~~L~~L~l~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--lp~~~- 474 (629)
..+++|++|++++|.+...+..+..+ ++|++|++++|......+..++.+++|++|++++|...+. +|..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 78888999999888877665545544 7888888888876555557788888888888888765443 33333
Q ss_pred -cCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCc
Q 048833 475 -KYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFM 553 (629)
Q Consensus 475 -~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 553 (629)
..+++|++|++++|... .+..++..++ ..+++|+.|++++|....
T Consensus 197 ~~~l~~L~~L~L~~N~l~---------------------------------~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGME---------------------------------TPSGVCSALA-AARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp TTSCTTCCEEECTTSCCC---------------------------------CHHHHHHHHH-HTTCCCSEEECTTSCCCS
T ss_pred hccCCCCCEEECCCCcCc---------------------------------chHHHHHHHH-hcCCCCCEEECCCCcCCc
Confidence 67788888888876321 1112232221 357899999999997544
Q ss_pred cCC-cCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCccccccCCCCCCCCCcccCCCceeeCCccc
Q 048833 554 ALP-RSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPALSERCKPPTGEDWPKISHIPQVYLDGEMI 628 (629)
Q Consensus 554 ~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~v~~~~~~~ 628 (629)
..| ..+..+++|++|++++| .++.+|..+. ++|+.|++++|. ++.. + .+..+.++..+.+.++.+
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~---p---~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNR-LDRN---P---SPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSC-CCSC---C---CTTTSCEEEEEECTTCTT
T ss_pred ccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCC-CCCC---h---hHhhCCCCCEEeccCCCC
Confidence 443 45667899999999996 5679998775 899999999996 3322 1 144556677788888875
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=8.5e-18 Score=180.74 Aligned_cols=257 Identities=20% Similarity=0.220 Sum_probs=198.2
Q ss_pred CCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccE
Q 048833 308 GRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLET 387 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 387 (629)
.+++.|+++++.+...+..+ .++|++|++++|.+..+|. .+++|++|++++| .+..+|. .+++|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l-------~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCL-------PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCC-------CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCE
T ss_pred CCCcEEEecCCCcCccChhh-------CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCE
Confidence 45889999988877654432 2689999999999998887 5789999999988 5777887 7899999
Q ss_pred eccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCC
Q 048833 388 LDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRL 467 (629)
Q Consensus 388 L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 467 (629)
|++++| .+..+|. .+++|+.|++++|.+...+.. +++|+.|++++|. +..+|. .+++|+.|++++|. +
T Consensus 106 L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~-l 173 (622)
T 3g06_A 106 LSIFSN-PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQ-L 173 (622)
T ss_dssp EEECSC-CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-C
T ss_pred EECcCC-cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCC-C
Confidence 999987 6777876 678999999999988876543 4899999999986 444553 45789999998865 5
Q ss_pred ccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEec
Q 048833 468 ISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIV 547 (629)
Q Consensus 468 ~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 547 (629)
+.+| ..+++|+.|++++|....++ ...++|+.|.+.++ .+..+|. .+++|+.|+++
T Consensus 174 ~~l~---~~~~~L~~L~Ls~N~l~~l~---------------~~~~~L~~L~L~~N-~l~~l~~-----~~~~L~~L~Ls 229 (622)
T 3g06_A 174 TSLP---MLPSGLQELSVSDNQLASLP---------------TLPSELYKLWAYNN-RLTSLPA-----LPSGLKELIVS 229 (622)
T ss_dssp SCCC---CCCTTCCEEECCSSCCSCCC---------------CCCTTCCEEECCSS-CCSSCCC-----CCTTCCEEECC
T ss_pred CCCc---ccCCCCcEEECCCCCCCCCC---------------CccchhhEEECcCC-cccccCC-----CCCCCCEEEcc
Confidence 6677 45789999999988543211 12368999999885 5666663 35889999999
Q ss_pred CCCCCccCCcCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCCccccccCCCCCCCCCcccCCCceeeCCcc
Q 048833 548 SCPNFMALPRSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCPALSERCKPPTGEDWPKISHIPQVYLDGEM 627 (629)
Q Consensus 548 ~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~l~~v~~~~~~ 627 (629)
+| .++.+| ..+++|+.|++++| .++.+|. .+++|+.|++++|. ++... ..+..+.++..+.+.++.
T Consensus 230 ~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp-----~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 230 GN-RLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLP-----ESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CCSCC-----GGGGGSCTTCEEECCSCC
T ss_pred CC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC-CCcCC-----HHHhhccccCEEEecCCC
Confidence 98 467777 56789999999996 7788887 67899999999995 44221 124456677778888876
Q ss_pred c
Q 048833 628 I 628 (629)
Q Consensus 628 ~ 628 (629)
+
T Consensus 296 l 296 (622)
T 3g06_A 296 L 296 (622)
T ss_dssp C
T ss_pred C
Confidence 5
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=6.2e-18 Score=165.52 Aligned_cols=152 Identities=22% Similarity=0.133 Sum_probs=80.4
Q ss_pred hcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEE
Q 048833 333 SKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVL 412 (629)
Q Consensus 333 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 412 (629)
..+++++.++++++.++.+|..+. +++++|++++|......|..+.++++|+.|++++| .+..+|.. +.+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 344555666666666665555443 45666666655332233445556666666666654 34444432 555666666
Q ss_pred EecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeecccc
Q 048833 413 VLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 413 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 488 (629)
++++|.+...+..+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 6666655555555555566666666555533222344555666666666555433222233455556666666554
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=1.7e-20 Score=197.74 Aligned_cols=207 Identities=18% Similarity=0.152 Sum_probs=100.6
Q ss_pred CCcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccc-ccc-cCCCC
Q 048833 282 PKSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVC-SRK-MGNLK 359 (629)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~-~~~l~ 359 (629)
++.++.+.+..+..........+..+++|+.|.++++.+.......+...+..+++|++|++++|.+... +.. ...+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 3445566666555555444444556666666666666555443334445555666666666666665421 111 12222
Q ss_pred ----ccceeecccCCCcc----ccchhhccCCCccEeccCCccccccCCccc-----cccCcccEEEecCcccccC----
Q 048833 360 ----HMRYLDLSRNSKIK----KLPKSICELQSLETLDLAGCLELEELPKDI-----KYLVNLRVLVLTTKQKSLQ---- 422 (629)
Q Consensus 360 ----~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i-----~~l~~L~~L~l~~~~~~~~---- 422 (629)
+|++|++++|.... .+|..+..+++|++|++++|......+..+ ...++|++|++++|.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 46666666653221 345556666666666666653221112111 1234566666666554431
Q ss_pred -cccCCCCCCCCeEeecCCCCcchhhhhCC-----CCCccceEecccCCCCc----cccccccCCCccceeecccc
Q 048833 423 -ESGIRSLGSLRSLKIFGCRDLEHLFEEID-----QLSVLRTLSIESCPRLI----SLPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 423 -~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~ 488 (629)
+..+..+++|++|++++|......+..+. ..++|++|++++|.... .++..+..+++|++|++++|
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 22233445555566555543221111111 23455555555543222 13444445555555555554
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.4e-17 Score=163.10 Aligned_cols=200 Identities=22% Similarity=0.251 Sum_probs=145.9
Q ss_pred cCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCe
Q 048833 355 MGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRS 434 (629)
Q Consensus 355 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 434 (629)
+.++++++.++++++ .+..+|..+. ++++.|++++|......|..+..+++|++|++++|.+...+.. +.+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 677889999999986 6788887664 7899999999854444567789999999999999998876543 78999999
Q ss_pred EeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCc
Q 048833 435 LKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPH 514 (629)
Q Consensus 435 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 514 (629)
|++++|. +..+|..+..+++|+.|++++|......|..+..+++|++|++++|....
T Consensus 82 L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~---------------------- 138 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT---------------------- 138 (290)
T ss_dssp EECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC----------------------
T ss_pred EECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc----------------------
Confidence 9999987 55778888899999999998876544444678899999999999874322
Q ss_pred eeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCc-CCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEe
Q 048833 515 LRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPR-SLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLT 593 (629)
Q Consensus 515 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 593 (629)
+|...+ ..+++|+.|++++|. ++.+|. .+..+++|+.|++++| .++.+|..+...++|+.|+
T Consensus 139 --------------~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~ 201 (290)
T 1p9a_G 139 --------------LPPGLL-TPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAF 201 (290)
T ss_dssp --------------CCTTTT-TTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEE
T ss_pred --------------cChhhc-ccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEE
Confidence 221111 345566666666664 444443 3455667777777663 4556666666666677777
Q ss_pred eeCCC
Q 048833 594 IGGCP 598 (629)
Q Consensus 594 l~~c~ 598 (629)
+++||
T Consensus 202 L~~Np 206 (290)
T 1p9a_G 202 LHGNP 206 (290)
T ss_dssp CCSCC
T ss_pred eCCCC
Confidence 66665
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=1.2e-17 Score=162.82 Aligned_cols=144 Identities=22% Similarity=0.175 Sum_probs=77.4
Q ss_pred cccEEEcCCCCcccccc-ccCCCCccceeecccCCCcccc-chhhccCCCccEeccCCccccccCCccccccCcccEEEe
Q 048833 337 FLRVLNLSESSIEVCSR-KMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVL 414 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 414 (629)
.|++|++++|.+..++. .+.++++|++|++++|. +..+ +..+.++++|++|++++|......|..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46666666666665554 45666666666666653 3333 334566666666666665333333345566666666666
Q ss_pred cCcccccCcc-cCCCCCCCCeEeecCCCCcc-hhhhhCCCCCccceEecccCCCCccccccccCCCccc
Q 048833 415 TTKQKSLQES-GIRSLGSLRSLKIFGCRDLE-HLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLE 481 (629)
Q Consensus 415 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 481 (629)
++|.+...+. .+..+++|++|++++|.... .+|..+..+++|+.|++++|......+..+..+++|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 6665544332 45556666666666555322 2355555566666666655543332233344444444
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=1.5e-17 Score=162.12 Aligned_cols=219 Identities=21% Similarity=0.246 Sum_probs=152.7
Q ss_pred EEEcCCCCccccccccCCCCccceeecccCCCccccc-hhhccCCCccEeccCCccccccCC-ccccccCcccEEEecCc
Q 048833 340 VLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLETLDLAGCLELEELP-KDIKYLVNLRVLVLTTK 417 (629)
Q Consensus 340 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~ 417 (629)
..+-.+..+..+|..+. ++|++|++++|. +..++ ..+.++++|++|++++|. +..++ ..+..+++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC
Confidence 34455666777887664 589999999884 55555 478999999999999984 55544 47899999999999999
Q ss_pred ccccCc-ccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCc-cccccccCCCccceeeccccccccccc
Q 048833 418 QKSLQE-SGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLI-SLPPAIKYLSSLENLYLARCESLDLNL 495 (629)
Q Consensus 418 ~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~l~~~~ 495 (629)
.+...+ ..+..+++|+.|++++|......+..++.+++|++|++++|.... .+|..+..+++|++|++++|.......
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 887654 568899999999999987554444468899999999999887544 368889999999999999985332110
Q ss_pred cccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCcc-EEEecCCCCCccCCcCCCCCCCcCeeecccCc
Q 048833 496 NMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLR-DLFIVSCPNFMALPRSLKDLEALETLVIARCP 574 (629)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~-~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~ 574 (629)
. . +.. + ..++.|. .|++++|. ++.++.......+|++|++++|.
T Consensus 167 ~----------------------------~---~~~-l--~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 167 T----------------------------D---LRV-L--HQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp G----------------------------G---GHH-H--HTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSC
T ss_pred H----------------------------H---hhh-h--hhccccceeeecCCCc-ccccCccccCCCcccEEECCCCc
Confidence 0 0 000 0 1122222 56666654 44444444444567777777753
Q ss_pred cCccCCcC-CCCCCCcCeEeeeCCC
Q 048833 575 KLSSLPEG-MHHVTTLKLLTIGGCP 598 (629)
Q Consensus 575 ~l~~lp~~-~~~l~~L~~L~l~~c~ 598 (629)
++.+|.. +..+++|+.|++++||
T Consensus 212 -l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 212 -LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp -CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred -eeecCHhHhcccccccEEEccCCc
Confidence 5555543 4666777777777544
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=1.5e-17 Score=161.60 Aligned_cols=208 Identities=19% Similarity=0.190 Sum_probs=129.5
Q ss_pred cCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCc-cccccCcccEE
Q 048833 334 KSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPK-DIKYLVNLRVL 412 (629)
Q Consensus 334 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L 412 (629)
.++.|+.|+++++.+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++| .+..+|. .++.+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence 4456777777777666554 46667777777777663 44443 4667777777777776 3444433 35677777777
Q ss_pred EecCcccccCcc-cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccc
Q 048833 413 VLTTKQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESL 491 (629)
Q Consensus 413 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l 491 (629)
++++|.+...+. .+..+++|+.|++++|......+..++.+++|+.|++++|......+..+..+++|++|++++|..
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l- 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL- 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC-
Confidence 777776665433 356677777777777754333333456777777777777654333334456677777777776632
Q ss_pred cccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecc
Q 048833 492 DLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIA 571 (629)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 571 (629)
..++...+ ..+++|+.|++++|+. .+.+++|+.|++.
T Consensus 194 -----------------------------------~~~~~~~~-~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~ 230 (272)
T 3rfs_A 194 -----------------------------------KSVPDGVF-DRLTSLQYIWLHDNPW-------DCTCPGIRYLSEW 230 (272)
T ss_dssp -----------------------------------SCCCTTTT-TTCTTCCEEECCSSCB-------CCCTTTTHHHHHH
T ss_pred -----------------------------------CccCHHHH-hCCcCCCEEEccCCCc-------cccCcHHHHHHHH
Confidence 11221111 4567788888887742 2456788888888
Q ss_pred cCccCccCCcCCCCCCCc
Q 048833 572 RCPKLSSLPEGMHHVTTL 589 (629)
Q Consensus 572 ~c~~l~~lp~~~~~l~~L 589 (629)
.|.....+|..++.++..
T Consensus 231 ~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 231 INKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp HHHTGGGBBCTTSCBCGG
T ss_pred HHhCCCcccCcccccCCC
Confidence 877667788776655543
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=9.1e-20 Score=192.11 Aligned_cols=307 Identities=17% Similarity=0.113 Sum_probs=185.1
Q ss_pred CcceEEEEEcccCCcchhhhhccCCC----CceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccc-----cc
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLG----RVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVC-----SR 353 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~----~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-----~~ 353 (629)
+.++.+.+..+.+...........++ +|++|++++|.+.......+...+..+++|++|++++|.+... ..
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 34667777666555433333333333 6778888777666555455666677777888888887776521 11
Q ss_pred c-cCCCCccceeecccCCCcc----ccchhhccCCCccEeccCCccccccCCcccc-----ccCcccEEEecCcccccC-
Q 048833 354 K-MGNLKHMRYLDLSRNSKIK----KLPKSICELQSLETLDLAGCLELEELPKDIK-----YLVNLRVLVLTTKQKSLQ- 422 (629)
Q Consensus 354 ~-~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~-----~l~~L~~L~l~~~~~~~~- 422 (629)
. .....+|++|++++|.... .++..+..+++|++|++++|......+..+. .+++|++|++++|.+...
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 1 2234567888887774322 2455566778888888887742222222222 255788888888776642
Q ss_pred ----cccCCCCCCCCeEeecCCCCcch----h-hhhCCCCCccceEecccCCCCcc----ccccccCCCccceeeccccc
Q 048833 423 ----ESGIRSLGSLRSLKIFGCRDLEH----L-FEEIDQLSVLRTLSIESCPRLIS----LPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 423 ----~~~~~~l~~L~~L~l~~~~~~~~----~-~~~~~~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~ 489 (629)
+..+..+++|++|++++|..... + +..+..+++|++|++++|..... ++..+..+++|++|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 34455678888888888763221 2 22234578888888887753322 56667778888888888874
Q ss_pred cccccccccccCCCCCCCCCCCCCceeeEeeccccCccc----chhhhhcCCCCCccEEEecCCCCCccC-C----cCCC
Q 048833 490 SLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLE----LPQWLLQGSTDTLRDLFIVSCPNFMAL-P----RSLK 560 (629)
Q Consensus 490 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~~~L~~L~l~~~~~~~~l-~----~~~~ 560 (629)
..+.... .+. .......++|+.|++++|.--.. ++.++ ..+++|+.|++++|. ++.. + ..+.
T Consensus 296 i~~~~~~-~l~-----~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~ 366 (461)
T 1z7x_W 296 LGDEGAR-LLC-----ETLLEPGCQLESLWVKSCSFTAACCSHFSSVL--AQNRFLLELQISNNR-LEDAGVRELCQGLG 366 (461)
T ss_dssp CHHHHHH-HHH-----HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH--HHCSSCCEEECCSSB-CHHHHHHHHHHHHT
T ss_pred CchHHHH-HHH-----HHhccCCccceeeEcCCCCCchHHHHHHHHHH--hhCCCccEEEccCCc-cccccHHHHHHHHc
Confidence 3211000 000 00011234788888887742221 34444 356888999998884 3322 2 1222
Q ss_pred -CCCCcCeeecccCccCc----cCCcCCCCCCCcCeEeeeCCC
Q 048833 561 -DLEALETLVIARCPKLS----SLPEGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 561 -~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~c~ 598 (629)
..++|++|++++|..-. .+|..+..+++|++|++++|+
T Consensus 367 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 26789999999874332 567767778889999999886
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=7.1e-18 Score=160.58 Aligned_cols=197 Identities=15% Similarity=0.251 Sum_probs=116.4
Q ss_pred ccceeecccCCCccccch-hhccCCCccEeccCCccccccCCc-cccccCcccEEEecC-cccccCc-ccCCCCCCCCeE
Q 048833 360 HMRYLDLSRNSKIKKLPK-SICELQSLETLDLAGCLELEELPK-DIKYLVNLRVLVLTT-KQKSLQE-SGIRSLGSLRSL 435 (629)
Q Consensus 360 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~-~~~~~~~-~~~~~l~~L~~L 435 (629)
+|++|++++| .+..+|. .+.++++|++|++++|..+..+|. .+..+++|++|++++ |.+...+ ..+..+++|+.|
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 5666666655 3444433 455666666666666533444443 455666666666665 5554333 244556666666
Q ss_pred eecCCCCcchhhhhCCCCCccc---eEecccCCCCccccc-cccCCCccc-eeeccccccccccccccccCCCCCCCCCC
Q 048833 436 KIFGCRDLEHLFEEIDQLSVLR---TLSIESCPRLISLPP-AIKYLSSLE-NLYLARCESLDLNLNMEIEGEGSHHDRKN 510 (629)
Q Consensus 436 ~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~lp~-~~~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 510 (629)
++++|.. ..+|. +..+++|+ .|++++|..++.+|. .+..+++|+ +|++++|.
T Consensus 111 ~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~--------------------- 167 (239)
T 2xwt_C 111 GIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG--------------------- 167 (239)
T ss_dssp EEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC---------------------
T ss_pred eCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC---------------------
Confidence 6666552 33444 55666666 777777644555543 466777777 77777653
Q ss_pred CCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCC-cCCCCC-CCcCeeecccCccCccCCcCCCCCCC
Q 048833 511 TRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALP-RSLKDL-EALETLVIARCPKLSSLPEGMHHVTT 588 (629)
Q Consensus 511 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~l~~ 588 (629)
+..+|...+ ..++|+.|++++|..++.+| ..+..+ ++|+.|++++| .++.+|.. .+++
T Consensus 168 ---------------l~~i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~ 227 (239)
T 2xwt_C 168 ---------------FTSVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK--GLEH 227 (239)
T ss_dssp ---------------CCEECTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT--TCTT
T ss_pred ---------------CcccCHhhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh--Hhcc
Confidence 222333322 12567777777775566554 456777 88888888884 56677764 6778
Q ss_pred cCeEeeeCCCcc
Q 048833 589 LKLLTIGGCPAL 600 (629)
Q Consensus 589 L~~L~l~~c~~l 600 (629)
|+.|.++++..|
T Consensus 228 L~~L~l~~~~~l 239 (239)
T 2xwt_C 228 LKELIARNTWTL 239 (239)
T ss_dssp CSEEECTTC---
T ss_pred CceeeccCccCC
Confidence 888888887643
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=7.6e-17 Score=156.44 Aligned_cols=196 Identities=24% Similarity=0.275 Sum_probs=135.3
Q ss_pred cccEEEcCCCCccccccccCCCCccceeecccCCCccccc-hhhccCCCccEeccCCccccccCCcc-ccccCcccEEEe
Q 048833 337 FLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLETLDLAGCLELEELPKD-IKYLVNLRVLVL 414 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l 414 (629)
..+.++++++.++.+|..+. .+|+.|++++|. +..+| ..+.++++|++|++++| .+..+|.. +..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEEC
Confidence 47889999999988887664 688999999874 55555 46888999999999887 55666655 477888888888
Q ss_pred cCcccccCcc-cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCcccc-ccccCCCccceeecccccccc
Q 048833 415 TTKQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLP-PAIKYLSSLENLYLARCESLD 492 (629)
Q Consensus 415 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~ 492 (629)
++|.+...+. .+..+++|+.|++++|......+..+..+++|+.|++++|. ++.+| ..+..+++|++|++++|..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l-- 169 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQL-- 169 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcC--
Confidence 8888766543 45777888888888776544444556777888888887765 33444 3366777777777776632
Q ss_pred ccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCc-CCCCCCCcCeeecc
Q 048833 493 LNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPR-SLKDLEALETLVIA 571 (629)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~ 571 (629)
..++...+ ..+++|+.|++++|. ++.+|. .+..+++|+.|+++
T Consensus 170 ----------------------------------~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 170 ----------------------------------KRVPEGAF-DKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp ----------------------------------SCCCTTTT-TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred ----------------------------------cEeChhHh-ccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEec
Confidence 12222111 345677777777774 444443 46677777777777
Q ss_pred cCcc
Q 048833 572 RCPK 575 (629)
Q Consensus 572 ~c~~ 575 (629)
+|+.
T Consensus 214 ~N~~ 217 (270)
T 2o6q_A 214 ENPW 217 (270)
T ss_dssp SSCB
T ss_pred CCCe
Confidence 7653
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=8.5e-19 Score=176.41 Aligned_cols=252 Identities=17% Similarity=0.175 Sum_probs=176.9
Q ss_pred CCCCceEEEEecCCCCccchHHHHHhhhcC--ccccEEEcCCCCccccccccCCCCccceeecccCCCccc-cchhhccC
Q 048833 306 DLGRVRTICFSTDDDEKTSQSFVESCISKS--QFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKK-LPKSICEL 382 (629)
Q Consensus 306 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-lp~~~~~l 382 (629)
....++.++++++... ... +..+ +.++.|+++++.+...+..+..+++|++|++++|..... +|..+..+
T Consensus 45 ~~~~~~~l~l~~~~~~---~~~----~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 117 (336)
T 2ast_B 45 DESLWQTLDLTGKNLH---PDV----TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 117 (336)
T ss_dssp CSTTSSEEECTTCBCC---HHH----HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB
T ss_pred CchhheeeccccccCC---HHH----HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC
Confidence 3445788888876544 222 3344 679999999999887777777899999999998853333 78888899
Q ss_pred CCccEeccCCccccccCCccccccCcccEEEecCc-cccc--CcccCCCCCCCCeEeecCCCCcch--hhhhCCCCC-cc
Q 048833 383 QSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTK-QKSL--QESGIRSLGSLRSLKIFGCRDLEH--LFEEIDQLS-VL 456 (629)
Q Consensus 383 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~-~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~-~L 456 (629)
++|++|++++|......|..++.+++|++|++++| .+.. .+..+..+++|++|++++|..+.. ++..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 99999999998655567777888999999999988 4542 344466788899999988833432 566677888 88
Q ss_pred ceEecccCC-CC--ccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhh
Q 048833 457 RTLSIESCP-RL--ISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWL 533 (629)
Q Consensus 457 ~~L~l~~~~-~~--~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 533 (629)
++|++++|. .+ ..+|..+..+++|++|++++|..++. ..+..+
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~----------------------------------~~~~~l 243 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN----------------------------------DCFQEF 243 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG----------------------------------GGGGGG
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH----------------------------------HHHHHH
Confidence 999888874 23 45666677788888888888753221 112223
Q ss_pred hcCCCCCccEEEecCCCCCcc-CCcCCCCCCCcCeeecccCccCccCCc-CCCCC-CCcCeEeeeCCCccccccCC
Q 048833 534 LQGSTDTLRDLFIVSCPNFMA-LPRSLKDLEALETLVIARCPKLSSLPE-GMHHV-TTLKLLTIGGCPALSERCKP 606 (629)
Q Consensus 534 ~~~~~~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l-~~L~~L~l~~c~~l~~~~~~ 606 (629)
..+++|+.|++++|..+.. ....+..+++|++|++++| ++. .+..+ ..|+.|++++|. ++.....
T Consensus 244 --~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~-l~~~~~~ 311 (336)
T 2ast_B 244 --FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSH-FTTIARP 311 (336)
T ss_dssp --GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCC-SCCTTCS
T ss_pred --hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEeccc-CccccCC
Confidence 3568999999999964332 1224678999999999998 333 23333 247777775544 5544433
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.1e-16 Score=155.42 Aligned_cols=171 Identities=23% Similarity=0.215 Sum_probs=98.7
Q ss_pred CceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccccc-ccCCCCccceeecccCCCccccchh-hccCCCcc
Q 048833 309 RVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSR-KMGNLKHMRYLDLSRNSKIKKLPKS-ICELQSLE 386 (629)
Q Consensus 309 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~ 386 (629)
..++++++++.+...+... .+.|+.|+++++.+..++. .+.++++|++|++++| .+..+|.. +.++++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLE 88 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCC
T ss_pred CCCEEEccCCCCCccCCCC-------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCC
Confidence 3456666665555433211 2456677777776666654 4666677777777665 34444433 45667777
Q ss_pred EeccCCccccccCCc-cccccCcccEEEecCcccccCcc-cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccC
Q 048833 387 TLDLAGCLELEELPK-DIKYLVNLRVLVLTTKQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESC 464 (629)
Q Consensus 387 ~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 464 (629)
+|++++| .+..+|. .+..+++|++|++++|.+...+. .+..+++|+.|++++|......+..+..+++|+.|++++|
T Consensus 89 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 89 TLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp EEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 7777665 3444443 34666677777777666654432 3566677777777666533322333566677777777665
Q ss_pred CCCccccccccCCCccceeecccc
Q 048833 465 PRLISLPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 465 ~~~~~lp~~~~~l~~L~~L~l~~~ 488 (629)
......+..+..+++|++|++++|
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 168 QLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCcEeChhHhccCCCcCEEECCCC
Confidence 433333334566666677666665
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=1.6e-17 Score=161.33 Aligned_cols=177 Identities=22% Similarity=0.224 Sum_probs=141.2
Q ss_pred ccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccc-hhhccC
Q 048833 304 LSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLP-KSICEL 382 (629)
Q Consensus 304 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l 382 (629)
...+++++.|.+.++...... .+..+++|++|++++|.+..++ .+..+++|++|++++|. +..+| ..++++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~------~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l 108 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ------GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKL 108 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT------TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred cccccceeeeeeCCCCccccc------ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCC
Confidence 445678899999887766543 2678899999999999998864 68899999999999884 55554 457899
Q ss_pred CCccEeccCCccccccCC-ccccccCcccEEEecCcccccCcc-cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEe
Q 048833 383 QSLETLDLAGCLELEELP-KDIKYLVNLRVLVLTTKQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLS 460 (629)
Q Consensus 383 ~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 460 (629)
++|++|++++|. +..+| ..++.+++|++|++++|.+...+. .+..+++|+.|++++|......+..++.+++|+.|+
T Consensus 109 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 109 TNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 999999999985 44554 447899999999999998876654 468899999999999975544455578899999999
Q ss_pred cccCCCCccccccccCCCccceeeccccc
Q 048833 461 IESCPRLISLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 461 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 489 (629)
+++|......|..+..+++|+.|++++|.
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 99987655555567889999999999874
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=2.7e-18 Score=172.77 Aligned_cols=251 Identities=20% Similarity=0.208 Sum_probs=177.5
Q ss_pred CcceEEEEEcccCCcchhhhhccCC--CCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccc--cccccCCC
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDL--GRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEV--CSRKMGNL 358 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~l 358 (629)
...+.+.+..+.... ..+..+ +.++.+.+.++........ +..+++|++|++++|.+.. ++..+..+
T Consensus 47 ~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 117 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQC 117 (336)
T ss_dssp TTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTTB
T ss_pred hhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhhC
Confidence 346677766655442 334444 7888998888765544332 4467899999999998763 67778889
Q ss_pred CccceeecccCCCccccchhhccCCCccEeccCCccccc--cCCccccccCcccEEEecCc-cccc--CcccCCCCC-CC
Q 048833 359 KHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELE--ELPKDIKYLVNLRVLVLTTK-QKSL--QESGIRSLG-SL 432 (629)
Q Consensus 359 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~lp~~i~~l~~L~~L~l~~~-~~~~--~~~~~~~l~-~L 432 (629)
++|++|++++|......|..++.+++|++|++++|..+. .+|..+..+++|++|++++| .+.. .+..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 999999999886445778888899999999999985555 36777888999999999998 6654 344567788 99
Q ss_pred CeEeecCCC-Cc--chhhhhCCCCCccceEecccCCCC-ccccccccCCCccceeeccccccccccccccccCCCCCCCC
Q 048833 433 RSLKIFGCR-DL--EHLFEEIDQLSVLRTLSIESCPRL-ISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDR 508 (629)
Q Consensus 433 ~~L~l~~~~-~~--~~~~~~~~~l~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 508 (629)
++|++++|. .+ ..++..+..+++|+.|++++|..+ ...+..+..+++|++|++++|......
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-------------- 263 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE-------------- 263 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG--------------
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH--------------
Confidence 999999985 23 456777778999999999998744 456667888899999999988422110
Q ss_pred CCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCc-CCCCC-CCcCeeecccCccCccCCcCC
Q 048833 509 KNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPR-SLKDL-EALETLVIARCPKLSSLPEGM 583 (629)
Q Consensus 509 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l-~~L~~L~l~~c~~l~~lp~~~ 583 (629)
.+ ..+ ..+++|+.|++++| ++. .+..+ .+|..|++++|......|..+
T Consensus 264 ----------------~~----~~l--~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 264 ----------------TL----LEL--GEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp ----------------GG----GGG--GGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred ----------------HH----HHH--hcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCccccCCcc
Confidence 00 112 34788999999988 222 12222 246667787765444555544
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=4.4e-17 Score=161.14 Aligned_cols=144 Identities=22% Similarity=0.273 Sum_probs=85.2
Q ss_pred CccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEe
Q 048833 335 SQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVL 414 (629)
Q Consensus 335 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 414 (629)
++.|+.|+++++.+..++ .+..+++|++|++++| .+..++. +..+++|++|++++| .+..+| .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEEC
Confidence 445666666666666554 4556666666666665 4455554 666666666666665 344444 4566666666666
Q ss_pred cCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeecccc
Q 048833 415 TTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 415 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 488 (629)
++|.+...+. +..+++|+.|++++|.. ..++. +..+++|+.|++++|. +..++. +..+++|+.|++++|
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCC
Confidence 6666555432 56666666666666653 22332 5566666666666653 334444 566666666666665
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=8.7e-19 Score=179.81 Aligned_cols=268 Identities=14% Similarity=0.080 Sum_probs=180.7
Q ss_pred hhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccc----cccc-------cCCCCccceeeccc
Q 048833 300 FSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEV----CSRK-------MGNLKHMRYLDLSR 368 (629)
Q Consensus 300 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----l~~~-------~~~l~~L~~L~l~~ 368 (629)
+...+..+++|+.|++++|.+.......+...+..+++|++|++++|.+.. +|.. +..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 345667788899999998876665555566667788999999998875542 2333 36788999999998
Q ss_pred CCCcc----ccchhhccCCCccEeccCCccccc----cCCcccccc---------CcccEEEecCccccc--Cc---ccC
Q 048833 369 NSKIK----KLPKSICELQSLETLDLAGCLELE----ELPKDIKYL---------VNLRVLVLTTKQKSL--QE---SGI 426 (629)
Q Consensus 369 ~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~----~lp~~i~~l---------~~L~~L~l~~~~~~~--~~---~~~ 426 (629)
|.... .+|..+..+++|++|+|++|.... .++..+..+ ++|++|++++|.+.. .+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 85443 377788889999999999885422 233334444 889999999888752 22 345
Q ss_pred CCCCCCCeEeecCCCCcc-----hhhhhCCCCCccceEecccCCCC----ccccccccCCCccceeeccccccccccccc
Q 048833 427 RSLGSLRSLKIFGCRDLE-----HLFEEIDQLSVLRTLSIESCPRL----ISLPPAIKYLSSLENLYLARCESLDLNLNM 497 (629)
Q Consensus 427 ~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~ 497 (629)
..+++|+.|++++|.... ..+..+..+++|+.|++++|... ..+|..+..+++|++|++++|.....
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~---- 259 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR---- 259 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH----
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh----
Confidence 677888999998886432 22337778888999999887643 56777788888888888888742210
Q ss_pred cccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCc----cCCcCC-CCCCCcCeeeccc
Q 048833 498 EIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFM----ALPRSL-KDLEALETLVIAR 572 (629)
Q Consensus 498 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~----~l~~~~-~~l~~L~~L~l~~ 572 (629)
....++..+....+++|+.|++++|.... .+|..+ .++++|++|++++
T Consensus 260 ---------------------------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 260 ---------------------------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp ---------------------------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred ---------------------------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 11223444432447889999999886443 277666 5688999999999
Q ss_pred CccCccCC--cCC-CCCCCcCeEeeeCCC
Q 048833 573 CPKLSSLP--EGM-HHVTTLKLLTIGGCP 598 (629)
Q Consensus 573 c~~l~~lp--~~~-~~l~~L~~L~l~~c~ 598 (629)
|+.-...+ ..+ ..+++++.+.+....
T Consensus 313 N~l~~~~~~~~~l~~~l~~~~~~~l~~~d 341 (386)
T 2ca6_A 313 NRFSEEDDVVDEIREVFSTRGRGELDELD 341 (386)
T ss_dssp SBSCTTSHHHHHHHHHHHHHTCCEECCCC
T ss_pred CcCCcchhHHHHHHHHhhhcCcchhhhcc
Confidence 75443332 111 234555555555443
No 86
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=1.5e-18 Score=188.96 Aligned_cols=314 Identities=15% Similarity=0.088 Sum_probs=169.4
Q ss_pred CcceEEEEEcccCCcch---hhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCC
Q 048833 283 KSVRHLSFAAANASRND---FSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLK 359 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~ 359 (629)
++++.+.+..+...... +...+..+++|+.|.++++.........+...+..+++|++|++++|.+..+|..+..++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~ 243 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh
Confidence 34566666555432221 334455667777777777666544455555666677777777777777766666666667
Q ss_pred ccceeecccCCCc---cccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccC--cccCCCCCCCCe
Q 048833 360 HMRYLDLSRNSKI---KKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQ--ESGIRSLGSLRS 434 (629)
Q Consensus 360 ~L~~L~l~~~~~~---~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~ 434 (629)
+|+.|+++.+... ...+..+..+++|+.|+++++ ....+|..+..+++|++|++++|.+... ...+..+++|+.
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 7777766542221 122233445555555555543 3444555556666677777766653321 122355666666
Q ss_pred EeecCCCCcchhhhhCCCCCccceEeccc----------CCCCcc--ccccccCCCccceeecccccccccccc------
Q 048833 435 LKIFGCRDLEHLFEEIDQLSVLRTLSIES----------CPRLIS--LPPAIKYLSSLENLYLARCESLDLNLN------ 496 (629)
Q Consensus 435 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~----------~~~~~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~------ 496 (629)
|++.++..-..++.....+++|++|++.+ |..++. ++.....+++|++|+++.+. ++....
T Consensus 323 L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~~ 401 (592)
T 3ogk_B 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD-ITNESLESIGTY 401 (592)
T ss_dssp EEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC-CCHHHHHHHHHH
T ss_pred EeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC-ccHHHHHHHHhh
Confidence 66653322222333334455566666652 333331 22222334555555552221 110000
Q ss_pred ------ccccC---CCCCCC---------CCCCCCceeeEeeccccC-cccc-hhhhhcCCCCCccEEEecCCCCCc-cC
Q 048833 497 ------MEIEG---EGSHHD---------RKNTRPHLRRVFIMEITQ-LLEL-PQWLLQGSTDTLRDLFIVSCPNFM-AL 555 (629)
Q Consensus 497 ------~~~~~---~~~~~~---------~~~~~~~L~~L~l~~~~~-l~~~-~~~~~~~~~~~L~~L~l~~~~~~~-~l 555 (629)
..+.. ...... ....+++|+.|+++.|.+ +... ...+ ...+++|+.|++++|..-. .+
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSCCSSHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCCCCCHHHH
Confidence 00000 000000 012356788888866543 2221 1122 2357889999999886322 34
Q ss_pred CcCCCCCCCcCeeecccCccCcc--CCcCCCCCCCcCeEeeeCCCccc
Q 048833 556 PRSLKDLEALETLVIARCPKLSS--LPEGMHHVTTLKLLTIGGCPALS 601 (629)
Q Consensus 556 ~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~l~ 601 (629)
+..+..+++|++|+|++|. ++. ++.....+++|+.|++++|+ ++
T Consensus 481 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CC
T ss_pred HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CC
Confidence 5556788999999999987 442 44444568899999999998 44
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=8.8e-17 Score=159.41 Aligned_cols=133 Identities=13% Similarity=0.002 Sum_probs=69.0
Q ss_pred CCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcc-cccccc--CCCCccceeecccCCCccccc----hhhc
Q 048833 308 GRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIE-VCSRKM--GNLKHMRYLDLSRNSKIKKLP----KSIC 380 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~lp----~~~~ 380 (629)
..++.+.+............... +..++.|++|++++|.+. ..|..+ ..+++|++|++++|......| ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34566666654443221111111 112345777777777765 334444 667777777777764333222 2234
Q ss_pred cCCCccEeccCCccccccCCccccccCcccEEEecCccccc---C--cccCCCCCCCCeEeecCCC
Q 048833 381 ELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSL---Q--ESGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 381 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~---~--~~~~~~l~~L~~L~l~~~~ 441 (629)
.+++|++|++++|......|..++.+++|++|++++|.+.. . ...+..+++|++|++++|.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 56667777776664333334455666666666666665432 1 1122445555555555554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=1.1e-16 Score=158.35 Aligned_cols=209 Identities=16% Similarity=0.238 Sum_probs=152.4
Q ss_pred EcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCccccc
Q 048833 342 NLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSL 421 (629)
Q Consensus 342 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 421 (629)
.+..+.+.... ....+++|++|++++| .+..+| .+..+++|++|++++| .+..++. +..+++|++|++++|.+..
T Consensus 25 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 25 AAGKSNVTDTV-TQADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HTTCSSTTSEE-CHHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred HhCCCCcCcee-cHHHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCC
Confidence 34444444332 3456889999999987 577777 5889999999999998 6777776 9999999999999999877
Q ss_pred CcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccC
Q 048833 422 QESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEG 501 (629)
Q Consensus 422 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 501 (629)
.+ .+..+++|+.|++++|.. ..++. +..+++|+.|++++|. ++.++. +..+++|++|++++|......
T Consensus 100 ~~-~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~------- 167 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLT------- 167 (308)
T ss_dssp CG-GGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG-------
T ss_pred ch-hhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCCh-------
Confidence 64 688999999999999974 44543 8899999999998875 455554 788999999999988533211
Q ss_pred CCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCccCccCC
Q 048833 502 EGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPKLSSLP 580 (629)
Q Consensus 502 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~lp 580 (629)
....+++|+.|+++++ .+..++. + ..+++|+.|++++|. ++.++. +..+++|+.|++++|+ +...|
T Consensus 168 ------~l~~l~~L~~L~l~~n-~l~~~~~-l--~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 168 ------PLANLSKLTTLKADDN-KISDISP-L--ASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp ------GGTTCTTCCEEECCSS-CCCCCGG-G--GGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEEEE-EECCC
T ss_pred ------hhcCCCCCCEEECCCC-ccCcChh-h--cCCCCCCEEEccCCc-cCcccc-ccCCCCCCEEEccCCe-eecCC
Confidence 0234557777777764 4445544 2 456777777777764 445443 6677777777777753 44444
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=9.6e-17 Score=152.71 Aligned_cols=198 Identities=17% Similarity=0.182 Sum_probs=145.8
Q ss_pred cccEEEcCCCCcccccc-ccCCCCccceeecccCCCccccch-hhccCCCccEeccCCccccccCC-ccccccCcccEEE
Q 048833 337 FLRVLNLSESSIEVCSR-KMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLETLDLAGCLELEELP-KDIKYLVNLRVLV 413 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~ 413 (629)
.|++|+++++.+..+|. .+.++++|++|++++|..+..+|. .+.++++|++|++++|..+..+| ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 68888999888888876 578889999999998754666654 67889999999998733566665 4678899999999
Q ss_pred ecCcccccCcccCCCCCCCC---eEeecCCCCcchhhh-hCCCCCccc-eEecccCCCCccccccccCCCccceeecccc
Q 048833 414 LTTKQKSLQESGIRSLGSLR---SLKIFGCRDLEHLFE-EIDQLSVLR-TLSIESCPRLISLPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 414 l~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~~-~~~~l~~L~-~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 488 (629)
+++|.+...+. +..+++|+ .|++++|..+..++. .+..+++|+ .|++++|. ++.+|......++|++|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCC
Confidence 99988877655 77888888 999999844555544 588899999 99998875 4467665444478888888876
Q ss_pred ccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCC-CCccEEEecCCCCCccCCcCCCCCCCcCe
Q 048833 489 ESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGST-DTLRDLFIVSCPNFMALPRSLKDLEALET 567 (629)
Q Consensus 489 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 567 (629)
.. ++.++...+ ..+ ++|+.|++++|. ++.+|.. .+++|+.
T Consensus 190 ~~-----------------------------------l~~i~~~~~-~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~ 230 (239)
T 2xwt_C 190 KY-----------------------------------LTVIDKDAF-GGVYSGPSLLDVSQTS-VTALPSK--GLEHLKE 230 (239)
T ss_dssp TT-----------------------------------CCEECTTTT-TTCSBCCSEEECTTCC-CCCCCCT--TCTTCSE
T ss_pred CC-----------------------------------cccCCHHHh-hccccCCcEEECCCCc-cccCChh--HhccCce
Confidence 31 222322221 345 788888888874 6677764 7888999
Q ss_pred eecccCcc
Q 048833 568 LVIARCPK 575 (629)
Q Consensus 568 L~l~~c~~ 575 (629)
|.+.++..
T Consensus 231 L~l~~~~~ 238 (239)
T 2xwt_C 231 LIARNTWT 238 (239)
T ss_dssp EECTTC--
T ss_pred eeccCccC
Confidence 98888653
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=3.3e-18 Score=186.25 Aligned_cols=312 Identities=13% Similarity=0.070 Sum_probs=202.9
Q ss_pred cceEEEEEccc-CCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcc-----ccccccCC
Q 048833 284 SVRHLSFAAAN-ASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIE-----VCSRKMGN 357 (629)
Q Consensus 284 ~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~ 357 (629)
+++.+.+..+. .....+......+++|+.|+++++........++...+..++.|++|+++++.+. .++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 47777776654 2223344455678999999998876655555556666778899999999988875 44445667
Q ss_pred CCccceeecccCCCccccchhhccCCCccEeccCCcccc---ccCCccccccCcccEEEecCcccccCcccCCCCCCCCe
Q 048833 358 LKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLEL---EELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRS 434 (629)
Q Consensus 358 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~---~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 434 (629)
+++|++|++++| .+..+|..+.++++|+.|+++.+... ...+..+..+++|+.|.++++.....+..+..+++|++
T Consensus 219 ~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 889999999987 46668888889999999999854322 34455678889999999988765566667778899999
Q ss_pred EeecCCCCcc-hhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccc----------cccccccccccc----
Q 048833 435 LKIFGCRDLE-HLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLAR----------CESLDLNLNMEI---- 499 (629)
Q Consensus 435 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~----------~~~l~~~~~~~~---- 499 (629)
|++++|.... .++..+..+++|+.|++.++..-..++.....+++|++|++++ |..++......+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 9999988332 2334578899999999985433334555556789999999994 544432100000
Q ss_pred cCCCC-------CC-----CCCCCCCceeeEeecc---ccCcccch------hhhhcCCCCCccEEEecCCCC-Ccc-CC
Q 048833 500 EGEGS-------HH-----DRKNTRPHLRRVFIME---ITQLLELP------QWLLQGSTDTLRDLFIVSCPN-FMA-LP 556 (629)
Q Consensus 500 ~~~~~-------~~-----~~~~~~~~L~~L~l~~---~~~l~~~~------~~~~~~~~~~L~~L~l~~~~~-~~~-l~ 556 (629)
..... .. .....+++|+.|.+.+ +..++..| ..+ ..+++|+.|+++.|.+ ++. .+
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~--~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL--IGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH--HHCTTCCEEEEECCGGGCCHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH--HhCCCCCEEEEecCCCCccHHHH
Confidence 00000 00 0001144566666652 33444321 112 3467777777766543 221 11
Q ss_pred cC-CCCCCCcCeeecccCccCc-cCCcCCCCCCCcCeEeeeCCC
Q 048833 557 RS-LKDLEALETLVIARCPKLS-SLPEGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 557 ~~-~~~l~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~c~ 598 (629)
.. ...+++|++|+|++|..-. .++..+..+++|++|++++|+
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 11 1347788888888865322 244445678999999999998
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=2.9e-18 Score=175.86 Aligned_cols=238 Identities=18% Similarity=0.140 Sum_probs=171.2
Q ss_pred HHHhhhcCccccEEEcCCCCccc-----cccccCCCCccceeecccCC--Cc-cccchhh-------ccCCCccEeccCC
Q 048833 328 VESCISKSQFLRVLNLSESSIEV-----CSRKMGNLKHMRYLDLSRNS--KI-KKLPKSI-------CELQSLETLDLAG 392 (629)
Q Consensus 328 ~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~--~~-~~lp~~~-------~~l~~L~~L~l~~ 392 (629)
+...+..+++|++|++++|.+.. ++..+..+++|++|+|++|. .+ ..+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34456778899999999998863 44557789999999999862 11 2345444 6889999999999
Q ss_pred ccccc----cCCccccccCcccEEEecCcccccC-----cccCCCC---------CCCCeEeecCCCCc-chhh---hhC
Q 048833 393 CLELE----ELPKDIKYLVNLRVLVLTTKQKSLQ-----ESGIRSL---------GSLRSLKIFGCRDL-EHLF---EEI 450 (629)
Q Consensus 393 ~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~~-----~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~~~ 450 (629)
|.... .+|..+..+++|++|++++|.+... +..+..+ ++|++|++++|... ..++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 85443 3777888999999999999987532 1223333 88999999988754 2333 466
Q ss_pred CCCCccceEecccCCCCc-----cccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccC
Q 048833 451 DQLSVLRTLSIESCPRLI-----SLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQ 525 (629)
Q Consensus 451 ~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 525 (629)
..+++|++|++++|.... ..|..+..+++|++|++++|.... ..
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~-------------------------------~g 232 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-------------------------------LG 232 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH-------------------------------HH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc-------------------------------HH
Confidence 778899999998875431 234467788889999998874211 01
Q ss_pred cccchhhhhcCCCCCccEEEecCCCCCcc----CCcCC--CCCCCcCeeecccCccCc----cCCcCC-CCCCCcCeEee
Q 048833 526 LLELPQWLLQGSTDTLRDLFIVSCPNFMA----LPRSL--KDLEALETLVIARCPKLS----SLPEGM-HHVTTLKLLTI 594 (629)
Q Consensus 526 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~----l~~~~--~~l~~L~~L~l~~c~~l~----~lp~~~-~~l~~L~~L~l 594 (629)
...+|..+ ..+++|+.|++++|..-.. +|..+ +.+++|++|+|++|..-. .+|..+ ..+++|+.|++
T Consensus 233 ~~~l~~~l--~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 233 SSALAIAL--KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHG--GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHH--ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 13345555 4678999999999974332 45555 458999999999975444 377766 56899999999
Q ss_pred eCCC
Q 048833 595 GGCP 598 (629)
Q Consensus 595 ~~c~ 598 (629)
++|+
T Consensus 311 ~~N~ 314 (386)
T 2ca6_A 311 NGNR 314 (386)
T ss_dssp TTSB
T ss_pred cCCc
Confidence 9997
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=158.43 Aligned_cols=221 Identities=14% Similarity=0.155 Sum_probs=145.0
Q ss_pred cccEEEcCCCCccc--ccc--ccCCCCccceeecccCCCccccchhh--ccCCCccEeccCCccccccCC----cccccc
Q 048833 337 FLRVLNLSESSIEV--CSR--KMGNLKHMRYLDLSRNSKIKKLPKSI--CELQSLETLDLAGCLELEELP----KDIKYL 406 (629)
Q Consensus 337 ~L~~L~l~~~~~~~--l~~--~~~~l~~L~~L~l~~~~~~~~lp~~~--~~l~~L~~L~l~~~~~~~~lp----~~i~~l 406 (629)
.++.+.+.++.+.. +.. .+..+++|++|++++|......|..+ ..+++|++|++++|......| ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46777777766541 111 12234668888888886555677766 788888888888875444333 234568
Q ss_pred CcccEEEecCcccccCc-ccCCCCCCCCeEeecCCCCcch--hhhh--CCCCCccceEecccCCCCccccc----cccCC
Q 048833 407 VNLRVLVLTTKQKSLQE-SGIRSLGSLRSLKIFGCRDLEH--LFEE--IDQLSVLRTLSIESCPRLISLPP----AIKYL 477 (629)
Q Consensus 407 ~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~--~~~l~~L~~L~l~~~~~~~~lp~----~~~~l 477 (629)
++|++|++++|.+...+ ..++.+++|++|++++|..... ++.. ++.+++|++|++++|. ++.++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcC
Confidence 88888888888876554 4677888888888888874432 3222 3577888888888775 344443 24567
Q ss_pred CccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhc-CCCCCccEEEecCCCCCccCC
Q 048833 478 SSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQ-GSTDTLRDLFIVSCPNFMALP 556 (629)
Q Consensus 478 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~~~~~l~ 556 (629)
++|++|++++|..... .|..+.. ..+++|++|++++|. ++.+|
T Consensus 224 ~~L~~L~Ls~N~l~~~-----------------------------------~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp 267 (310)
T 4glp_A 224 VQPHSLDLSHNSLRAT-----------------------------------VNPSAPRCMWSSALNSLNLSFAG-LEQVP 267 (310)
T ss_dssp CCCSSEECTTSCCCCC-----------------------------------CCSCCSSCCCCTTCCCEECCSSC-CCSCC
T ss_pred CCCCEEECCCCCCCcc-----------------------------------chhhHHhccCcCcCCEEECCCCC-CCchh
Confidence 8888888887743221 0111100 123678888888774 55777
Q ss_pred cCCCCCCCcCeeecccCccCccCCcCCCCCCCcCeEeeeCCC
Q 048833 557 RSLKDLEALETLVIARCPKLSSLPEGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 557 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 598 (629)
..+. ++|+.|++++| .++.+|. +..+++|+.|++++|+
T Consensus 268 ~~~~--~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCC--SCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred hhhc--CCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 7654 78888888885 5666654 5677888888888887
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=6.6e-16 Score=155.79 Aligned_cols=171 Identities=12% Similarity=0.120 Sum_probs=97.0
Q ss_pred eEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccc-cCCCCccceeecccCCCccccch-hhccCCCccEe
Q 048833 311 RTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRK-MGNLKHMRYLDLSRNSKIKKLPK-SICELQSLETL 388 (629)
Q Consensus 311 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L 388 (629)
+++..+++.+..++... .++++.|+|++|.++.+|.. |.++++|++|+|++|...+.+|. .|.++++|.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCCSCCTTC-------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCCCCccCcCc-------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 34555555555443321 24577777777777777653 67777777777777654455553 45667666654
Q ss_pred ccCCccccccC-CccccccCcccEEEecCcccccCcc-cCCCCCCCCeEeecCCCCcchhhh-hCCCC-CccceEecccC
Q 048833 389 DLAGCLELEEL-PKDIKYLVNLRVLVLTTKQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFE-EIDQL-SVLRTLSIESC 464 (629)
Q Consensus 389 ~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l-~~L~~L~l~~~ 464 (629)
...++..+..+ |..+..+++|++|++++|.+...+. .+....++..|++.++..+..++. .+..+ ..++.|++++|
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 33333345544 4456677777777777776654432 233445556666665554444433 23333 34666666554
Q ss_pred CCCccccccccCCCccceeeccccc
Q 048833 465 PRLISLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 465 ~~~~~lp~~~~~l~~L~~L~l~~~~ 489 (629)
. ++.+|.......+|++|++.+++
T Consensus 165 ~-i~~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 165 G-IQEIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp C-CCEECTTSSTTEEEEEEECTTCT
T ss_pred c-ccCCChhhccccchhHHhhccCC
Confidence 3 44555555455566666665543
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=1.1e-16 Score=162.33 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=21.8
Q ss_pred CCCCCccEEEecCCCC-------CccCCcCCCCCCCcCeeecccCc
Q 048833 536 GSTDTLRDLFIVSCPN-------FMALPRSLKDLEALETLVIARCP 574 (629)
Q Consensus 536 ~~~~~L~~L~l~~~~~-------~~~l~~~~~~l~~L~~L~l~~c~ 574 (629)
..+++|+.|++++|.. +..++..+..+++|+.|++++|.
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3456666666666641 22234445566666666666654
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=9.2e-15 Score=140.02 Aligned_cols=149 Identities=19% Similarity=0.144 Sum_probs=81.6
Q ss_pred cccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecC
Q 048833 337 FLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTT 416 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~ 416 (629)
..+.++++++.+..+|..+. .+++.|++++|......|..+.++++|++|++++|......|..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45666666666666666554 4666777766643333344566666777777766533333333456666666666666
Q ss_pred cccccCc-ccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccc-cccCCCccceeecccc
Q 048833 417 KQKSLQE-SGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPP-AIKYLSSLENLYLARC 488 (629)
Q Consensus 417 ~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~ 488 (629)
|.+...+ ..+..+++|+.|++++|......+..+..+++|+.|++++|. ++.+|. .+..+++|++|++++|
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC
Confidence 6655443 234555666666666654322222234555566666665543 233332 4555555555555554
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=7e-15 Score=148.28 Aligned_cols=175 Identities=14% Similarity=0.146 Sum_probs=86.7
Q ss_pred CCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcc-cccc-ccCCCCccceeecccCCCcccc-chhhccCCC
Q 048833 308 GRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIE-VCSR-KMGNLKHMRYLDLSRNSKIKKL-PKSICELQS 384 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~ 384 (629)
++++.|.+++|.+...... .|..+++|++|+|++|.+. .+|. .|.+++++..+....++.+..+ |..+..+++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 3556666666655544322 2455666666666666553 3333 2455555554332222234443 344556666
Q ss_pred ccEeccCCccccccCCc-cccccCcccEEEecCc-ccccCc-ccCCCC-CCCCeEeecCCCCcchhhhhCCCCCccceEe
Q 048833 385 LETLDLAGCLELEELPK-DIKYLVNLRVLVLTTK-QKSLQE-SGIRSL-GSLRSLKIFGCRDLEHLFEEIDQLSVLRTLS 460 (629)
Q Consensus 385 L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~-~~~~~~-~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 460 (629)
|++|++++| .+..+|. .+....++..|++..+ .+...+ ..+..+ ..++.|++++|. ++.++.......+|++|.
T Consensus 106 L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 106 LQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELN 183 (350)
T ss_dssp CCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEE
T ss_pred ccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHh
Confidence 666666655 3333332 2334445555555432 222221 223333 245556666554 334444444455566666
Q ss_pred cccCCCCccccc-cccCCCccceeecccc
Q 048833 461 IESCPRLISLPP-AIKYLSSLENLYLARC 488 (629)
Q Consensus 461 l~~~~~~~~lp~-~~~~l~~L~~L~l~~~ 488 (629)
+.+++.++.+|. .+..+++|++|++++|
T Consensus 184 l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 184 LSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp CTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred hccCCcccCCCHHHhccCcccchhhcCCC
Confidence 655555555554 3455666666666655
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=1.4e-16 Score=161.74 Aligned_cols=89 Identities=20% Similarity=0.163 Sum_probs=40.5
Q ss_pred cCCCCceEEEEecCCCCccchHHHHHhhhcCc-cccEEEcCCCCcccc-ccccCCC-----CccceeecccCCCccccch
Q 048833 305 SDLGRVRTICFSTDDDEKTSQSFVESCISKSQ-FLRVLNLSESSIEVC-SRKMGNL-----KHMRYLDLSRNSKIKKLPK 377 (629)
Q Consensus 305 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~l-----~~L~~L~l~~~~~~~~lp~ 377 (629)
...++|+.|++++|.+.......+...+..++ .|++|++++|.+... +..+..+ ++|++|++++|......+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 33344555555555554444433334444554 555555555555432 2222222 5555555555532222222
Q ss_pred h----hccC-CCccEeccCCc
Q 048833 378 S----ICEL-QSLETLDLAGC 393 (629)
Q Consensus 378 ~----~~~l-~~L~~L~l~~~ 393 (629)
. +..+ ++|++|++++|
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N 119 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWN 119 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSS
T ss_pred HHHHHHHhCCCCccEEECcCC
Confidence 2 2222 45555555555
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=1.7e-14 Score=138.16 Aligned_cols=175 Identities=18% Similarity=0.161 Sum_probs=115.4
Q ss_pred CccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcc-cCCCCCCCCeEee
Q 048833 359 KHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQES-GIRSLGSLRSLKI 437 (629)
Q Consensus 359 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l 437 (629)
...+.++++++ .+..+|..+. ++|+.|++++|......|..+..+++|++|++++|.+...+. .+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45677888765 5777777654 678888888875444445567888888888888887765543 4677788888888
Q ss_pred cCCCCcchhhhhCCCCCccceEecccCCCCccccc-cccCCCccceeeccccccccccccccccCCCCCCCCCCCCCcee
Q 048833 438 FGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPP-AIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLR 516 (629)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 516 (629)
++|......+..+..+++|++|++++|.. +.+|. .+..+++|++|++++|..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l-------------------------- 143 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQL-------------------------- 143 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC--------------------------
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcC-CCcChhHhccCCcccEEECcCCcC--------------------------
Confidence 87765444445567777788888777643 34443 356677777777776632
Q ss_pred eEeeccccCcccchh-hhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCcc
Q 048833 517 RVFIMEITQLLELPQ-WLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPK 575 (629)
Q Consensus 517 ~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~ 575 (629)
..++. .+ ..+++|+.|++++|......+..+..+++|+.|++++|+.
T Consensus 144 ----------~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 144 ----------QSIPAGAF--DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ----------CCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ----------CccCHHHc--CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 22222 12 4567778888877753333334567777888888877654
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=3.1e-15 Score=158.77 Aligned_cols=191 Identities=20% Similarity=0.216 Sum_probs=132.9
Q ss_pred ccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEec
Q 048833 336 QFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLT 415 (629)
Q Consensus 336 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~ 415 (629)
.+|+.|+++++.+..+|..+. ++|++|++++| .+..+| ..+++|++|++++| .+..+|. +.. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 479999999999988887663 78999999987 566888 45789999999987 5666887 655 89999999
Q ss_pred CcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccc
Q 048833 416 TKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNL 495 (629)
Q Consensus 416 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~ 495 (629)
+|.+...+. .+++|+.|++++|.. ..+|. .+++|+.|++++|. ++.+|. +. ++|+.|++++|....++.
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred CCcCCCCCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCCchhh
Confidence 998887655 678899999988874 44655 57889999998875 555777 54 888999998874322110
Q ss_pred cccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCcCeeecccCcc
Q 048833 496 NMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEALETLVIARCPK 575 (629)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~ 575 (629)
+ . .+| ....+.|+.|++++|. ++.+|..+..+++|+.|+|++|+.
T Consensus 198 ---~----------~--~~L-------------------~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 198 ---V----------P--VRN-------------------HHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ---C----------C-----------------------------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSC
T ss_pred ---H----------H--Hhh-------------------hcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcC
Confidence 0 0 011 0112234667776663 556666666677777777777655
Q ss_pred CccCCcC
Q 048833 576 LSSLPEG 582 (629)
Q Consensus 576 l~~lp~~ 582 (629)
...+|..
T Consensus 243 ~~~~p~~ 249 (571)
T 3cvr_A 243 SSRIRES 249 (571)
T ss_dssp CHHHHHH
T ss_pred CCcCHHH
Confidence 4444443
No 100
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=2.9e-17 Score=178.86 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=47.7
Q ss_pred CCceeeEeec-----cccCcccchhh--h--hcCCCCCccEEEecCCCCCcc-CCcCCC-CCCCcCeeecccCccCccCC
Q 048833 512 RPHLRRVFIM-----EITQLLELPQW--L--LQGSTDTLRDLFIVSCPNFMA-LPRSLK-DLEALETLVIARCPKLSSLP 580 (629)
Q Consensus 512 ~~~L~~L~l~-----~~~~l~~~~~~--~--~~~~~~~L~~L~l~~~~~~~~-l~~~~~-~l~~L~~L~l~~c~~l~~lp 580 (629)
+++|+.|++. +|..++..|.. + ....+++|+.|++++ .++. .+..+. .+++|+.|+|++|......+
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 4566677766 34455432210 0 013456777777754 2221 111222 36788888888875322222
Q ss_pred cCC-CCCCCcCeEeeeCCCc
Q 048833 581 EGM-HHVTTLKLLTIGGCPA 599 (629)
Q Consensus 581 ~~~-~~l~~L~~L~l~~c~~ 599 (629)
..+ ..+++|+.|++++|+.
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSC
T ss_pred HHHHhcCCCcCEEECcCCCC
Confidence 222 4578999999999985
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=7.5e-15 Score=143.73 Aligned_cols=171 Identities=21% Similarity=0.270 Sum_probs=136.7
Q ss_pred cCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCC
Q 048833 305 SDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQS 384 (629)
Q Consensus 305 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 384 (629)
..+++|+.|.++++...... .+..+++|++|++++|.+..++. +..+++|++|++++| .+..+|. +..+++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~------~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~ 113 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKK 113 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTT
T ss_pred hhcCcccEEEccCCCcccCh------hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCC
Confidence 45677888888887766542 26778899999999999988776 888999999999987 4666665 888999
Q ss_pred ccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccC
Q 048833 385 LETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESC 464 (629)
Q Consensus 385 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 464 (629)
|++|++++| .+..++ .+..+++|++|++++|.+... ..+..+++|+.|++++|.. ..++. +..+++|+.|++++|
T Consensus 114 L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 114 LKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCCEEECCSS
T ss_pred CCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc-ccchh-hcCCCccCEEECCCC
Confidence 999999987 566664 688899999999999988776 5678889999999998874 44444 888999999999887
Q ss_pred CCCccccccccCCCccceeeccccccc
Q 048833 465 PRLISLPPAIKYLSSLENLYLARCESL 491 (629)
Q Consensus 465 ~~~~~lp~~~~~l~~L~~L~l~~~~~l 491 (629)
. ++.+|. +..+++|+.|++++|...
T Consensus 189 ~-i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 189 H-ISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp C-CCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred c-CCCChh-hccCCCCCEEECcCCccc
Confidence 4 556664 788899999999987543
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=3.1e-15 Score=137.49 Aligned_cols=150 Identities=15% Similarity=0.203 Sum_probs=104.3
Q ss_pred cCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEE
Q 048833 334 KSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLV 413 (629)
Q Consensus 334 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 413 (629)
.++.|+.|+++++.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3456777777777777766 5777777888888776 454444 467777788888877644444666777777777777
Q ss_pred ecCccccc-CcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccc
Q 048833 414 LTTKQKSL-QESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 414 l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 489 (629)
+++|.+.. .+..+..+++|+.|++++|..+..++ .+..+++|+.|++++|. +..++ .+..+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcc
Confidence 77777664 34556777778888887776455554 57777888888887765 44455 56777888888887764
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=1.8e-16 Score=172.52 Aligned_cols=302 Identities=14% Similarity=0.104 Sum_probs=184.7
Q ss_pred CcceEEEEEcccCCcchhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccc-----cccccCC
Q 048833 283 KSVRHLSFAAANASRNDFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEV-----CSRKMGN 357 (629)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~ 357 (629)
+.++.+.+..+......+......+++|+.|.+.++. ......+...+..+++|++|++++|.+.. ++.....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE--GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE--EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC--CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 4578888888776655444433468899999998753 23344455566788999999999988653 3333446
Q ss_pred CCccceeecccCC-Cc--cccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCccc-------cc------
Q 048833 358 LKHMRYLDLSRNS-KI--KKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQK-------SL------ 421 (629)
Q Consensus 358 l~~L~~L~l~~~~-~~--~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~-------~~------ 421 (629)
+++|++|++++|. .+ ..++..+..+++|++|++++|..+..+|..+..+++|+.|.+..+.. ..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 7899999999874 11 22344445679999999999866666777778888888888654421 00
Q ss_pred ------------------CcccCCCCCCCCeEeecCCCCcch-hhhhCCCCCccceEecccCCCCccccccccCCCccce
Q 048833 422 ------------------QESGIRSLGSLRSLKIFGCRDLEH-LFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLEN 482 (629)
Q Consensus 422 ------------------~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 482 (629)
.+..+..+++|+.|++++|..... +...+..+++|++|++.+|..-..++.....+++|++
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCE
Confidence 111112456777777777762221 2333556777777777766221223333345677777
Q ss_pred eeccccc--------cccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEec-----CC
Q 048833 483 LYLARCE--------SLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIV-----SC 549 (629)
Q Consensus 483 L~l~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~-----~~ 549 (629)
|++++|. .++... .......+++|+.|.+ ++..+...........+++|+.|+++ +|
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~---------l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQG---------LVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHH---------HHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred EEEecCcccccccCCCCCHHH---------HHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 7775432 111000 0000112567888854 44455433222222357899999998 56
Q ss_pred CCCccCCc------CCCCCCCcCeeecccCccCcc-CCcCCC-CCCCcCeEeeeCCC
Q 048833 550 PNFMALPR------SLKDLEALETLVIARCPKLSS-LPEGMH-HVTTLKLLTIGGCP 598 (629)
Q Consensus 550 ~~~~~l~~------~~~~l~~L~~L~l~~c~~l~~-lp~~~~-~l~~L~~L~l~~c~ 598 (629)
..++..|. .+..+++|++|++++ .+.. .+..+. .+++|+.|++++|.
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC
Confidence 66664442 246788999999976 3332 222222 37889999999987
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=1.5e-14 Score=141.58 Aligned_cols=145 Identities=25% Similarity=0.325 Sum_probs=82.6
Q ss_pred cCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEE
Q 048833 334 KSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLV 413 (629)
Q Consensus 334 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 413 (629)
.++.|+.|+++++.+..++ .+..+++|++|++++| .+..++. +.++++|+.|++++| .+..+| .+..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEE
Confidence 3455677777777666654 3566667777777665 3445554 666677777777665 344444 366666666666
Q ss_pred ecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeecccc
Q 048833 414 LTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 414 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 488 (629)
+++|.+... +.+..+++|+.|++++|... .+ ..+..+++|+.|++++|. +..++. +..+++|++|++++|
T Consensus 119 L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 119 LEHNGISDI-NGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CTTSCCCCC-GGGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS
T ss_pred CCCCcCCCC-hhhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCC
Confidence 666665544 34555566666666655432 22 345555555555555543 233332 455555555555554
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=7.9e-15 Score=157.52 Aligned_cols=138 Identities=20% Similarity=0.255 Sum_probs=76.5
Q ss_pred EEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccc
Q 048833 341 LNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKS 420 (629)
Q Consensus 341 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 420 (629)
+.+..+.+..++. +..+.+|+.|++++| .+..+|. +..+++|+.|+|++| .+..+|. +..+++|+.|++++|.+.
T Consensus 26 l~l~~~~i~~~~~-~~~L~~L~~L~l~~n-~i~~l~~-l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 26 DNLKKKSVTDAVT-QNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HHTTCSCTTSEEC-HHHHTTCCCCBCTTC-CCCCCTT-GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred HhccCCCcccccc-hhcCCCCCEEECcCC-CCCCChH-HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCC
Confidence 3444444443322 345566666666655 3455543 566666666666665 3444443 566666666666666655
Q ss_pred cCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeecccc
Q 048833 421 LQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 421 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 488 (629)
..+ .+..+++|+.|++++|... .+ +.+..+++|+.|+|++|. +..+ ..+..+++|+.|+|++|
T Consensus 101 ~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 101 DLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CCT-TSTTCTTCCEEECTTSCCC-CC-GGGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSS
T ss_pred CCh-hhccCCCCCEEEecCCCCC-CC-ccccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCC
Confidence 443 4566666666666666532 22 345566666666666654 3333 34556666666666665
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=2.2e-14 Score=133.11 Aligned_cols=146 Identities=25% Similarity=0.270 Sum_probs=77.7
Q ss_pred cEEEcCCCCccccccccCCCCccceeecccCCCccccch-hhccCCCccEeccCCccccccCCcc-ccccCcccEEEecC
Q 048833 339 RVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLETLDLAGCLELEELPKD-IKYLVNLRVLVLTT 416 (629)
Q Consensus 339 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~ 416 (629)
+.++.+++.+..+|..+ .++|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence 45566666666666544 3467777777663 444443 4566777777777765 34444433 45666666666666
Q ss_pred cccccCcc-cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeecccc
Q 048833 417 KQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 417 ~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 488 (629)
|.+...+. .+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 66554432 2455555666666555432222223455555555555554322222222444555555555443
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=1.9e-14 Score=154.52 Aligned_cols=169 Identities=22% Similarity=0.272 Sum_probs=108.5
Q ss_pred cCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCC
Q 048833 305 SDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQS 384 (629)
Q Consensus 305 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 384 (629)
..++.|+.|.++++.+.... .+..+++|+.|+|++|.+..++. +..+++|++|+|++| .+..+| .+..+++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~ 110 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKK 110 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTT
T ss_pred hcCCCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCC
Confidence 34566666767666655432 25567777777777777776655 667777777777766 455555 4667777
Q ss_pred ccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccC
Q 048833 385 LETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESC 464 (629)
Q Consensus 385 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 464 (629)
|+.|+|++| .+..+| .+..+++|+.|++++|.+... ..+..+++|+.|++++|.... ++. +..+++|+.|+|++|
T Consensus 111 L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 111 LKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CCEEECTTS-CCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred CCEEEecCC-CCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcCC
Confidence 777777776 344443 466777777777777766655 456667777777777765433 333 666777777777665
Q ss_pred CCCccccccccCCCccceeeccccc
Q 048833 465 PRLISLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 465 ~~~~~lp~~~~~l~~L~~L~l~~~~ 489 (629)
. +..+| .+..+++|+.|++++|.
T Consensus 186 ~-i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 186 H-ISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp C-CCBCG-GGTTCTTCSEEECCSEE
T ss_pred C-CCCCh-HHccCCCCCEEEccCCc
Confidence 4 34443 36667777777777664
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=3.5e-14 Score=130.45 Aligned_cols=128 Identities=17% Similarity=0.259 Sum_probs=90.2
Q ss_pred CCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCccccc-CcccCCCCCCCCe
Q 048833 356 GNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSL-QESGIRSLGSLRS 434 (629)
Q Consensus 356 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~ 434 (629)
..+++|++|++++| .+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55677888888876 466677 5778888888888877 454444 67777888888888777664 3456777777777
Q ss_pred EeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeecccc
Q 048833 435 LKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 435 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 488 (629)
|++++|......+..++.+++|+.|++++|..++.+| .+..+++|++|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 7777776555566667777777777777766556665 4666777777777665
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=5.3e-14 Score=149.31 Aligned_cols=176 Identities=20% Similarity=0.273 Sum_probs=131.2
Q ss_pred ccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecC
Q 048833 360 HMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFG 439 (629)
Q Consensus 360 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 439 (629)
+|+.|++++| .+..+|..+ +++|++|++++| .+..+| ..+++|++|++++|.+...+. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 7888999887 466688765 378999999887 566787 457888888888888877655 444 888888888
Q ss_pred CCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEe
Q 048833 440 CRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVF 519 (629)
Q Consensus 440 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 519 (629)
|.. ..+|. .+++|+.|++++|. ++.+|. .+++|++|++++|.
T Consensus 130 N~l-~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~------------------------------ 171 (571)
T 3cvr_A 130 NQL-TMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQ------------------------------ 171 (571)
T ss_dssp SCC-SCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC------------------------------
T ss_pred CcC-CCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCC------------------------------
Confidence 764 34555 57788888887765 445665 46778888887763
Q ss_pred eccccCcccchhhhhcCCCCCccEEEecCCCCCccCCcCCCCCCCc-------CeeecccCccCccCCcCCCCCCCcCeE
Q 048833 520 IMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALPRSLKDLEAL-------ETLVIARCPKLSSLPEGMHHVTTLKLL 592 (629)
Q Consensus 520 l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L-------~~L~l~~c~~l~~lp~~~~~l~~L~~L 592 (629)
+..+|. + . ++|+.|++++| .++.+|. +.. +| +.|+|++| .++.+|..+..+++|+.|
T Consensus 172 ------L~~lp~-l--~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 172 ------LTFLPE-L--P--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTI 235 (571)
T ss_dssp ------CSCCCC-C--C--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEE
T ss_pred ------CCCcch-h--h--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEE
Confidence 333444 2 1 78899999988 4668887 554 77 99999996 788899988889999999
Q ss_pred eeeCCCc
Q 048833 593 TIGGCPA 599 (629)
Q Consensus 593 ~l~~c~~ 599 (629)
++++|+-
T Consensus 236 ~L~~N~l 242 (571)
T 3cvr_A 236 ILEDNPL 242 (571)
T ss_dssp ECCSSSC
T ss_pred EeeCCcC
Confidence 9999984
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=1.2e-13 Score=129.04 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=109.5
Q ss_pred cEEEcCCCCccccccccCCCCccceeecccCCCccccc-hhhccCCCccEeccCCccccccCCccccccCcccEEEecCc
Q 048833 339 RVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTK 417 (629)
Q Consensus 339 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 417 (629)
+.++.+++.+..+|..+. .+|+.|++++|. +..+| ..+..+++|+.|+|++|......|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567777777877777654 678888888774 55444 36778888888888887544444777888888888888888
Q ss_pred ccccCccc-CCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccc
Q 048833 418 QKSLQESG-IRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 418 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 489 (629)
.+...+.. +..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 87766543 5778888888888887655556778888888888888876444444567788888888888874
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=2.2e-16 Score=168.64 Aligned_cols=193 Identities=17% Similarity=0.186 Sum_probs=116.9
Q ss_pred CCCCccceeecccCCCccccchhhccCCCccEeccCCcc-------------ccccCCccccccCcccEEE-ecCccccc
Q 048833 356 GNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCL-------------ELEELPKDIKYLVNLRVLV-LTTKQKSL 421 (629)
Q Consensus 356 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~-------------~~~~lp~~i~~l~~L~~L~-l~~~~~~~ 421 (629)
..+++|+.|+|++| .+..+|..+++|++|+.|++++|. .....|..++.+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34556666666655 455666666666666666665442 2334455566677777666 34332211
Q ss_pred Ccc------cCCC--CCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccccccc
Q 048833 422 QES------GIRS--LGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDL 493 (629)
Q Consensus 422 ~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~ 493 (629)
... .+.. ...|+.|++++|. +..+|. ++.+++|+.|++++|. ++.+|..++.+++|+.|++++|.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~---- 497 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA---- 497 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC----
T ss_pred hhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC----
Confidence 100 0000 1247777777775 344555 7777778888887764 44777777777778888777762
Q ss_pred cccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccC--CcCCCCCCCcCeeecc
Q 048833 494 NLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMAL--PRSLKDLEALETLVIA 571 (629)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~ 571 (629)
++.+| .+ ..+++|+.|++++|. ++.+ |..++.+++|+.|+|+
T Consensus 498 --------------------------------l~~lp-~l--~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 498 --------------------------------LENVD-GV--ANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp --------------------------------CCCCG-GG--TTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECT
T ss_pred --------------------------------CCCCc-cc--CCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEec
Confidence 22344 23 567788888888775 4444 7778888888888888
Q ss_pred cCccCccCCcCC----CCCCCcCeEe
Q 048833 572 RCPKLSSLPEGM----HHVTTLKLLT 593 (629)
Q Consensus 572 ~c~~l~~lp~~~----~~l~~L~~L~ 593 (629)
+| .++.+|... ..+|+|+.|+
T Consensus 542 ~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 542 GN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CC-cCCCCccHHHHHHHHCcccCccC
Confidence 85 455555433 2367777775
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.8e-13 Score=127.92 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=107.3
Q ss_pred cEEEcCCCCccccccccCCCCccceeecccCCCcccc-c-hhhccCCCccEeccCCccccccCC-ccccccCcccEEEec
Q 048833 339 RVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKL-P-KSICELQSLETLDLAGCLELEELP-KDIKYLVNLRVLVLT 415 (629)
Q Consensus 339 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-p-~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~ 415 (629)
+.++++++.+..+|..+. ..+++|++++| .+..+ | ..+.++++|+.|++++|. +..++ ..+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECC
Confidence 577788888877776653 35678888876 45544 3 346778888888888774 44444 467888888888888
Q ss_pred CcccccCcc-cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccc
Q 048833 416 TKQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 416 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 489 (629)
+|.+...+. .+..+++|++|++++|......|..+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 887776543 47778888888888887655556778888888888888876555557778888888888888874
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=3e-13 Score=127.29 Aligned_cols=147 Identities=27% Similarity=0.269 Sum_probs=111.9
Q ss_pred ccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCc-cccccCcccEEEecC
Q 048833 338 LRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPK-DIKYLVNLRVLVLTT 416 (629)
Q Consensus 338 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~ 416 (629)
...++.+++.+..+|..+. ++|++|++++|......|..+.++++|++|+|++| .+..+|. .+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 4567778888888887654 78888888887544444677888888888888887 4566664 457888888888888
Q ss_pred cccccCcc-cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCcccc-ccccCCCccceeeccccc
Q 048833 417 KQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLP-PAIKYLSSLENLYLARCE 489 (629)
Q Consensus 417 ~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 489 (629)
|.+...+. .+..+++|+.|++++|. +..+|..+..+++|+.|++++|. +..+| ..+..+++|+.|++++|.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 88876654 36788888888888886 45777888888889999998875 44444 457788888999888874
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=2.1e-13 Score=131.14 Aligned_cols=146 Identities=20% Similarity=0.206 Sum_probs=94.0
Q ss_pred hcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEE
Q 048833 333 SKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVL 412 (629)
Q Consensus 333 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 412 (629)
..++.|++|++++|.+..++ .+..+++|++|++++| .+..+|. +.++++|++|++++| .+..+|... . ++|++|
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~-~-~~L~~L 111 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIP-S-ACLSRL 111 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCC-C-SSCCEE
T ss_pred hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCccc-c-CcccEE
Confidence 34566777777777776665 5666777777777766 4555555 667777777777776 455555422 2 677777
Q ss_pred EecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccc
Q 048833 413 VLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 413 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 489 (629)
++++|.+...+ .+..+++|+.|++++|.. ..++ .+..+++|+.|++++|.. ..+ ..+..+++|+.|++++|.
T Consensus 112 ~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~i-~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 112 FLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLHGNEI-TNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECTTSCC-CBC-TTSTTCCCCCEEEEEEEE
T ss_pred EccCCccCCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECCCCcC-cch-HHhccCCCCCEEeCCCCc
Confidence 77777666553 466777777777777653 3333 466677777777766543 333 456667777777777664
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=2.1e-13 Score=126.43 Aligned_cols=158 Identities=19% Similarity=0.186 Sum_probs=81.2
Q ss_pred CCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccc-cCCCCccceeecccCCCccccch-hhccCCCc
Q 048833 308 GRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRK-MGNLKHMRYLDLSRNSKIKKLPK-SICELQSL 385 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L 385 (629)
++++.|.++++.+...... .+..+++|++|++++|.+..+|.. +..+++|++|++++|. +..+|. .+.++++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCC
Confidence 3555666655554433222 244555666666666665555443 4555666666666552 333332 34556666
Q ss_pred cEeccCCccccccCCcc-ccccCcccEEEecCcccccCcc-cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEeccc
Q 048833 386 ETLDLAGCLELEELPKD-IKYLVNLRVLVLTTKQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIES 463 (629)
Q Consensus 386 ~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 463 (629)
++|++++| .+..+|.. +..+++|++|++++|.+...+. .+..+++|+.|++++|.. .+.+++|+.|++..
T Consensus 103 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 103 KELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWI 174 (208)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-------CCCTTTTHHHHHHH
T ss_pred CEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-------ecCCCCHHHHHHHH
Confidence 66666655 33333332 4555666666666655544333 245555666666655532 12344555555555
Q ss_pred CCCCccccccccCCC
Q 048833 464 CPRLISLPPAIKYLS 478 (629)
Q Consensus 464 ~~~~~~lp~~~~~l~ 478 (629)
|...+.+|.+++.++
T Consensus 175 n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 175 NKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHCTTTBBCTTSSBC
T ss_pred HhCCceeeccCcccc
Confidence 555555555554433
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=1.1e-13 Score=133.13 Aligned_cols=145 Identities=21% Similarity=0.186 Sum_probs=113.0
Q ss_pred cCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEE
Q 048833 334 KSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLV 413 (629)
Q Consensus 334 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 413 (629)
.+..+..++++++.+..++ .+..+++|++|++++| .+..+| .+..+++|++|++++| .+..+|. +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEE
Confidence 3455677788888888777 5778899999999987 577777 5888999999999987 5677776 88999999999
Q ss_pred ecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccc
Q 048833 414 LTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 414 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 489 (629)
+++|.+...+.. .. ++|+.|++++|.. ..++ .+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.
T Consensus 92 L~~N~l~~l~~~-~~-~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 92 VNRNRLKNLNGI-PS-ACLSRLFLDNNEL-RDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp CCSSCCSCCTTC-CC-SSCCEEECCSSCC-SBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSC
T ss_pred CCCCccCCcCcc-cc-CcccEEEccCCcc-CCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCc
Confidence 999988776543 33 8889999988864 3343 57888888888888765 55555 57778888888888774
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=9.6e-13 Score=122.91 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=114.0
Q ss_pred EEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccccc--ccCCCCccceeecccCCCccccc-hhhccCCCccEe
Q 048833 312 TICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSR--KMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLETL 388 (629)
Q Consensus 312 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L 388 (629)
+++++++.+...+.. -...+++|++++|.+..++. .+..+++|++|++++|. +..++ ..+.++++|++|
T Consensus 15 ~l~~s~n~l~~iP~~-------~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH-------IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp EEECCSSCCSSCCSC-------CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred EeEeCCCCcccCccC-------CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEE
Confidence 566777666654332 13457899999999988743 37889999999999884 55554 478899999999
Q ss_pred ccCCccccccCCccccccCcccEEEecCcccccC-cccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCC
Q 048833 389 DLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQ-ESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPR 466 (629)
Q Consensus 389 ~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 466 (629)
+|++|......|..+..+++|++|++++|.+... +..+..+++|+.|++++|......|..+..+++|+.|++++|..
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999854433444588999999999999988766 56788899999999999886555578899999999999988764
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=3.2e-12 Score=119.35 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=91.6
Q ss_pred cEeccCCccccccCCccccccCcccEEEecCcccccCcc-cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccC
Q 048833 386 ETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESC 464 (629)
Q Consensus 386 ~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 464 (629)
+.++.+++ .+..+|..+. ++|+.|++++|.+...+. .+..+++|+.|++++|......|..+..+++|+.|++++|
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46777764 6777777654 678888888887765543 5677777777777777655444666777777777777766
Q ss_pred CCCccccc-cccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccE
Q 048833 465 PRLISLPP-AIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRD 543 (629)
Q Consensus 465 ~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 543 (629)
. ++.+|. .+..+++|++|++++|...... +..+ ..+++|+.
T Consensus 91 ~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-----------------------------------~~~~--~~l~~L~~ 132 (220)
T 2v9t_B 91 K-ITELPKSLFEGLFSLQLLLLNANKINCLR-----------------------------------VDAF--QDLHNLNL 132 (220)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------------------TTTT--TTCTTCCE
T ss_pred c-CCccCHhHccCCCCCCEEECCCCCCCEeC-----------------------------------HHHc--CCCCCCCE
Confidence 4 334443 3566777777777765321100 1112 34566777
Q ss_pred EEecCCCCCccCCcCCCCCCCcCeeecccCc
Q 048833 544 LFIVSCPNFMALPRSLKDLEALETLVIARCP 574 (629)
Q Consensus 544 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~ 574 (629)
|++++|......+..+..+++|+.|+|++|+
T Consensus 133 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 7777664332233346666677777776654
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=5.9e-13 Score=118.80 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=86.5
Q ss_pred cCccccEEEcCCCCcc--ccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccE
Q 048833 334 KSQFLRVLNLSESSIE--VCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRV 411 (629)
Q Consensus 334 ~~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 411 (629)
..+.|+.|++++|.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3466888888888877 777777778888888888774 5555 55777888888888877443336666666778888
Q ss_pred EEecCcccccCc--ccCCCCCCCCeEeecCCCCcchhhh----hCCCCCccceEecccCC
Q 048833 412 LVLTTKQKSLQE--SGIRSLGSLRSLKIFGCRDLEHLFE----EIDQLSVLRTLSIESCP 465 (629)
Q Consensus 412 L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~ 465 (629)
|++++|.+...+ ..+..+++|+.|++++|.. ...+. .+..+++|+.|++++|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCC
Confidence 887777766543 4556666666666666653 23332 45556666666665553
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=1.2e-13 Score=152.34 Aligned_cols=143 Identities=21% Similarity=0.230 Sum_probs=93.3
Q ss_pred HHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccC
Q 048833 328 VESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLV 407 (629)
Q Consensus 328 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~ 407 (629)
.+..+..+..|++|+|++|.+..+|..+..+++|++|+|++| .+..+|..+++|++|++|+|++| .+..+|..++.|+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 344566777777777777777777777667777777777776 45577777777777777777776 4557777777777
Q ss_pred cccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCc-cceEecccCCCCccccc
Q 048833 408 NLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSV-LRTLSIESCPRLISLPP 472 (629)
Q Consensus 408 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~lp~ 472 (629)
+|++|++++|.+...+..++.+++|+.|++++|.....+|..+..+.. +..|++++|.....+|.
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 777777777777766666777777777777777655555555443321 12355666554444443
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=1.6e-12 Score=131.47 Aligned_cols=148 Identities=23% Similarity=0.317 Sum_probs=70.1
Q ss_pred cccEEEcCCCCccccccc-cC-CCCccceeecccCCCccccc-hhhccCCCccEeccCCccccccCCc-cccccCcccEE
Q 048833 337 FLRVLNLSESSIEVCSRK-MG-NLKHMRYLDLSRNSKIKKLP-KSICELQSLETLDLAGCLELEELPK-DIKYLVNLRVL 412 (629)
Q Consensus 337 ~L~~L~l~~~~~~~l~~~-~~-~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L 412 (629)
.+++|++++|.+..++.. +. ++++|++|+|++|. +..++ ..+.++++|++|+|++|. +..+|. .+..+++|++|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEE
Confidence 355555555555555443 33 55555555555552 33333 345555555555555552 333332 34555555555
Q ss_pred EecCcccccC-cccCCCCCCCCeEeecCCCCcchhhhh-C---CCCCccceEecccCCCCcccc-ccccCCCc--cceee
Q 048833 413 VLTTKQKSLQ-ESGIRSLGSLRSLKIFGCRDLEHLFEE-I---DQLSVLRTLSIESCPRLISLP-PAIKYLSS--LENLY 484 (629)
Q Consensus 413 ~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~---~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~--L~~L~ 484 (629)
++++|.+... +..+..+++|+.|++++|.. ..+|.. + ..+++|+.|++++|. ++.+| ..+..++. |+.|+
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEE
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEE
Confidence 5555555433 33455555555555555542 223322 2 345555555555543 22332 23333443 24455
Q ss_pred cccc
Q 048833 485 LARC 488 (629)
Q Consensus 485 l~~~ 488 (629)
+++|
T Consensus 196 l~~N 199 (361)
T 2xot_A 196 LHNN 199 (361)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 5444
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=1.8e-13 Score=150.79 Aligned_cols=151 Identities=21% Similarity=0.154 Sum_probs=92.6
Q ss_pred hhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhc
Q 048833 301 SSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSIC 380 (629)
Q Consensus 301 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 380 (629)
+..+..++.|+.|++++|.+...... +..+++|++|+|++|.+..+|..+.++++|++|+|++| .+..+|..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-----~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~ 290 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISAN-----IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELG 290 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGG-----GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGG
T ss_pred hhhhccCCCCcEEECCCCCCCCCChh-----hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhc
Confidence 34566777888888887776654433 33677788888888888878877888888888888877 4557787788
Q ss_pred cCCCccEeccCCccccccCCccccccCcccEEEecCcccccCc-ccCCCCC-CCCeEeecCCCCcchhhhhCCCCCccce
Q 048833 381 ELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQE-SGIRSLG-SLRSLKIFGCRDLEHLFEEIDQLSVLRT 458 (629)
Q Consensus 381 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 458 (629)
+|++|++|+|++| .+..+|..|+.+++|++|++++|.+...+ ..+..+. .+..+++.+|.....+| ..|+.
T Consensus 291 ~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~ 363 (727)
T 4b8c_D 291 SCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRF 363 (727)
T ss_dssp GGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---
T ss_pred CCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccce
Confidence 8888888888876 56677877888888888888888776432 2222111 11234556655433333 34555
Q ss_pred EecccC
Q 048833 459 LSIESC 464 (629)
Q Consensus 459 L~l~~~ 464 (629)
|+++.|
T Consensus 364 l~l~~n 369 (727)
T 4b8c_D 364 IEINTD 369 (727)
T ss_dssp ------
T ss_pred eEeecc
Confidence 555544
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=1.5e-12 Score=122.55 Aligned_cols=129 Identities=24% Similarity=0.279 Sum_probs=89.2
Q ss_pred ccccEEEcCCCCcccc-ccccCCCCccceeecccCCCccccc-hhhccCCCccEeccCCccccccCCcc-ccccCcccEE
Q 048833 336 QFLRVLNLSESSIEVC-SRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLETLDLAGCLELEELPKD-IKYLVNLRVL 412 (629)
Q Consensus 336 ~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L 412 (629)
++|++|++++|.+..+ |..+..+++|++|+|++|. +..+| ..+..+++|++|+|++| .+..+|.. +..+++|++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence 5677777777777765 4456777777788877763 45555 34567777888888776 45555443 5677778888
Q ss_pred EecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCC
Q 048833 413 VLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPR 466 (629)
Q Consensus 413 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 466 (629)
++++|.+...+..+..+++|+.|++++|......+..+..+++|+.|++.+|..
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 887777776666677777888888877764333334577778888888877653
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=1.7e-12 Score=131.31 Aligned_cols=152 Identities=20% Similarity=0.221 Sum_probs=88.5
Q ss_pred CceEEEEecCCCCccchHHHHHhhh-cCccccEEEcCCCCcccccc-ccCCCCccceeecccCCCccccc-hhhccCCCc
Q 048833 309 RVRTICFSTDDDEKTSQSFVESCIS-KSQFLRVLNLSESSIEVCSR-KMGNLKHMRYLDLSRNSKIKKLP-KSICELQSL 385 (629)
Q Consensus 309 ~l~~L~l~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L 385 (629)
.++.|++++|.+....... +. .+++|++|++++|.+..++. .+.++++|++|+|++|. +..+| ..+.++++|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQAL 114 (361)
T ss_dssp TCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred CCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCC
Confidence 4666777766655543322 33 56667777777777666654 36666777777777663 44443 346667777
Q ss_pred cEeccCCccccccCCccccccCcccEEEecCcccccCcccC----CCCCCCCeEeecCCCCcchhhhhCCCCCc--cceE
Q 048833 386 ETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGI----RSLGSLRSLKIFGCRDLEHLFEEIDQLSV--LRTL 459 (629)
Q Consensus 386 ~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~l~~--L~~L 459 (629)
+.|+|++|......|..+..+++|++|++++|.+...+..+ ..+++|+.|++++|......+..+..++. |+.|
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTE
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceE
Confidence 77777766433333556666777777777777666554332 45667777777666533222234445554 3666
Q ss_pred ecccCC
Q 048833 460 SIESCP 465 (629)
Q Consensus 460 ~l~~~~ 465 (629)
++.+|.
T Consensus 195 ~l~~N~ 200 (361)
T 2xot_A 195 YLHNNP 200 (361)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 666654
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=8.4e-13 Score=115.16 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=68.8
Q ss_pred CccccEEEcCCCCcc--ccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEE
Q 048833 335 SQFLRVLNLSESSIE--VCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVL 412 (629)
Q Consensus 335 ~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 412 (629)
.+.|+.|++++|.+. .+|..+..+++|++|++++| .+..+ ..++.+++|++|++++|.....+|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 466788888888777 67777777788888888776 45555 557777778888887764333366666667777777
Q ss_pred EecCcccccCc--ccCCCCCCCCeEeecCCC
Q 048833 413 VLTTKQKSLQE--SGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 413 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~ 441 (629)
++++|.+...+ ..+..+++|+.|++++|.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 77776655432 344555555555555553
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=9.4e-12 Score=113.46 Aligned_cols=126 Identities=16% Similarity=0.177 Sum_probs=92.8
Q ss_pred cEEEcCCCCccccccccCCCCccceeecccCCCccccch--hhccCCCccEeccCCccccccCCccccccCcccEEEecC
Q 048833 339 RVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPK--SICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTT 416 (629)
Q Consensus 339 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~ 416 (629)
++++++++.+..+|..+.. +|++|++++| .+..++. .++.+++|++|++++|......|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6788888888888876643 8888888877 4565554 378888888888888754444477788888888888888
Q ss_pred cccccCcc-cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCC
Q 048833 417 KQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRL 467 (629)
Q Consensus 417 ~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 467 (629)
|.+...+. .+..+++|+.|++++|......|..+..+++|+.|++++|...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 87775543 4677788888888877765555667777778888887776543
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=2.9e-12 Score=114.30 Aligned_cols=132 Identities=22% Similarity=0.239 Sum_probs=108.3
Q ss_pred CCCCccceeecccCCCcc--ccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCccccc-CcccCCCCCCC
Q 048833 356 GNLKHMRYLDLSRNSKIK--KLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSL-QESGIRSLGSL 432 (629)
Q Consensus 356 ~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L 432 (629)
...++|+.|++++|. +. .+|..+..+++|+.|++++|. +..+ ..+..+++|++|++++|.+.. .+..+..+++|
T Consensus 21 ~~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 345789999999985 55 888888999999999999984 6666 678999999999999999887 45555669999
Q ss_pred CeEeecCCCCcchhh--hhCCCCCccceEecccCCCCccccc----cccCCCccceeecccccccc
Q 048833 433 RSLKIFGCRDLEHLF--EEIDQLSVLRTLSIESCPRLISLPP----AIKYLSSLENLYLARCESLD 492 (629)
Q Consensus 433 ~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~~~~l~ 492 (629)
+.|++++|.. ..++ ..+..+++|+.|++++|. +..+|. .+..+++|++|++++|...+
T Consensus 98 ~~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 98 THLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CEEECBSSSC-CSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CEEeccCCcc-CcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999999974 4444 678899999999999876 455554 78899999999999986443
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=3.2e-12 Score=114.91 Aligned_cols=103 Identities=26% Similarity=0.287 Sum_probs=47.5
Q ss_pred cCccccEEEcCCCCccccccccCCCC-ccceeecccCCCccccchhhccCCCccEeccCCccccccCCccc-cccCcccE
Q 048833 334 KSQFLRVLNLSESSIEVCSRKMGNLK-HMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDI-KYLVNLRV 411 (629)
Q Consensus 334 ~~~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i-~~l~~L~~ 411 (629)
.+..|+.|++++|.+..+|. +..+. +|++|++++| .+..+ ..++.+++|++|++++| .+..+|..+ +.+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 34445555555555555432 22322 5555555554 33333 33555555555555554 333444333 45555555
Q ss_pred EEecCcccccCcc--cCCCCCCCCeEeecCC
Q 048833 412 LVLTTKQKSLQES--GIRSLGSLRSLKIFGC 440 (629)
Q Consensus 412 L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~ 440 (629)
|++++|.+...+. .+..+++|+.|++++|
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence 5555554433222 2333344444444433
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=3.8e-12 Score=110.98 Aligned_cols=126 Identities=22% Similarity=0.243 Sum_probs=101.9
Q ss_pred CCCccceeecccCCCcc--ccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCccccc-CcccCCCCCCCC
Q 048833 357 NLKHMRYLDLSRNSKIK--KLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSL-QESGIRSLGSLR 433 (629)
Q Consensus 357 ~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~ 433 (629)
..++|+.|++++|. +. .+|..+..+++|+.|++++| .+..+ ..++.+++|++|++++|.+.. .+..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 45789999999985 54 78888899999999999998 56666 678899999999999999887 555566789999
Q ss_pred eEeecCCCCcch-hhhhCCCCCccceEecccCCCCccccc----cccCCCccceeecc
Q 048833 434 SLKIFGCRDLEH-LFEEIDQLSVLRTLSIESCPRLISLPP----AIKYLSSLENLYLA 486 (629)
Q Consensus 434 ~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~ 486 (629)
.|++++|..... .+..+..+++|+.|++++|. ++.+|. .+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 999999874431 33778899999999998875 455554 67888999999886
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=2.7e-11 Score=110.33 Aligned_cols=123 Identities=22% Similarity=0.309 Sum_probs=76.2
Q ss_pred cEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCC-ccccccCcccEEEecCc
Q 048833 339 RVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELP-KDIKYLVNLRVLVLTTK 417 (629)
Q Consensus 339 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~ 417 (629)
++++++++.+..+|..+. .+|++|++++| .+..+|..+.++++|++|++++|. +..++ ..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC
Confidence 567777777777776553 57777777776 466777777777777777777763 44433 45667777777777777
Q ss_pred ccccCcc-cCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCC
Q 048833 418 QKSLQES-GIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCP 465 (629)
Q Consensus 418 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 465 (629)
.+...+. .+..+++|+.|++++|......+..+..+++|+.|++++|.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 6655432 45556666666666655332222235555555555555543
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=3.4e-11 Score=109.73 Aligned_cols=124 Identities=22% Similarity=0.198 Sum_probs=106.2
Q ss_pred ceeecccCCCccccchhhccCCCccEeccCCccccccCCcc--ccccCcccEEEecCcccccC-cccCCCCCCCCeEeec
Q 048833 362 RYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKD--IKYLVNLRVLVLTTKQKSLQ-ESGIRSLGSLRSLKIF 438 (629)
Q Consensus 362 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~ 438 (629)
++++++++ .++.+|..+.. +|++|++++| .+..++.. ++.+++|++|++++|.+... +..+..+++|+.|+++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 78999987 67888886644 9999999998 56666653 89999999999999998876 5678999999999999
Q ss_pred CCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeeccccc
Q 048833 439 GCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCE 489 (629)
Q Consensus 439 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 489 (629)
+|......+..+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 998665556668999999999999988766778889999999999999885
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=1.5e-11 Score=110.52 Aligned_cols=132 Identities=16% Similarity=0.160 Sum_probs=106.0
Q ss_pred hccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhh-cc
Q 048833 303 LLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSI-CE 381 (629)
Q Consensus 303 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~ 381 (629)
.+.++.+++.|.+++|.+..... .....++|++|++++|.+..+ ..+..+++|++|++++| .+..+|..+ ..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-----~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 86 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-----LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQA 86 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-----GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHH
T ss_pred hcCCcCCceEEEeeCCCCchhHH-----hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhc
Confidence 35677899999999988775421 233344899999999999988 67899999999999988 566777554 89
Q ss_pred CCCccEeccCCccccccCCc--cccccCcccEEEecCcccccCccc----CCCCCCCCeEeecCCCC
Q 048833 382 LQSLETLDLAGCLELEELPK--DIKYLVNLRVLVLTTKQKSLQESG----IRSLGSLRSLKIFGCRD 442 (629)
Q Consensus 382 l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~----~~~l~~L~~L~l~~~~~ 442 (629)
+++|++|++++| .+..+|. .+..+++|++|++++|.+...+.. +..+++|+.|++++|..
T Consensus 87 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 87 LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999999998 5678887 789999999999999998766543 66777777777777653
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=9.7e-11 Score=106.64 Aligned_cols=123 Identities=24% Similarity=0.277 Sum_probs=104.1
Q ss_pred ceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCc-ccCCCCCCCCeEeecCC
Q 048833 362 RYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQE-SGIRSLGSLRSLKIFGC 440 (629)
Q Consensus 362 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~ 440 (629)
++++++++ .+..+|..+. ++|++|++++| .+..+|..+..+++|++|++++|.+...+ ..+..+++|+.|++++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67888876 6788887653 68999999997 67799999999999999999999988765 46899999999999999
Q ss_pred CCcchhhhhCCCCCccceEecccCCCCccccc-cccCCCccceeeccccc
Q 048833 441 RDLEHLFEEIDQLSVLRTLSIESCPRLISLPP-AIKYLSSLENLYLARCE 489 (629)
Q Consensus 441 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 489 (629)
......+..+..+++|+.|++++|. ++.+|. .+..+++|+.|++++|.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 8655556679999999999999876 445554 58889999999999885
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=3e-11 Score=128.90 Aligned_cols=153 Identities=17% Similarity=0.217 Sum_probs=119.2
Q ss_pred HHHhhhcCccccEEE-cCCCCcccccc------ccCC--CCccceeecccCCCccccchhhccCCCccEeccCCcccccc
Q 048833 328 VESCISKSQFLRVLN-LSESSIEVCSR------KMGN--LKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEE 398 (629)
Q Consensus 328 ~~~~~~~~~~L~~L~-l~~~~~~~l~~------~~~~--l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~ 398 (629)
.+..+..+++|+.|+ ++.+.+..++. .+.. ...|++|++++| .+..+|. ++.+++|+.|+|++| .+..
T Consensus 401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~ 477 (567)
T 1dce_A 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRA 477 (567)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCC
T ss_pred CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccc
Confidence 344566778888888 56554433321 1111 135899999988 6777887 999999999999998 5779
Q ss_pred CCccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchh-hhhCCCCCccceEecccCCCCccccccc---
Q 048833 399 LPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHL-FEEIDQLSVLRTLSIESCPRLISLPPAI--- 474 (629)
Q Consensus 399 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~lp~~~--- 474 (629)
+|..++.+++|+.|++++|.+...+ .++.+++|+.|++++|...... |..++.+++|+.|++++|. +..+|...
T Consensus 478 lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l 555 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERL 555 (567)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHH
T ss_pred cchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHH
Confidence 9999999999999999999998876 8999999999999999754443 8899999999999999976 44444433
Q ss_pred -cCCCccceeec
Q 048833 475 -KYLSSLENLYL 485 (629)
Q Consensus 475 -~~l~~L~~L~l 485 (629)
..+++|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 34788888864
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=8e-13 Score=121.40 Aligned_cols=126 Identities=23% Similarity=0.276 Sum_probs=58.5
Q ss_pred ccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCcccCCCCCCCC
Q 048833 354 KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLR 433 (629)
Q Consensus 354 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 433 (629)
.+..+++|++|++++| .+..+| .+.++++|++|++++| .+..+|..+..+++|++|++++|.+...+ .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 4444445555555444 233344 3444555555555444 33344444444445555555554444332 344444555
Q ss_pred eEeecCCCCcchhh--hhCCCCCccceEecccCCCCccccc----------cccCCCccceee
Q 048833 434 SLKIFGCRDLEHLF--EEIDQLSVLRTLSIESCPRLISLPP----------AIKYLSSLENLY 484 (629)
Q Consensus 434 ~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~lp~----------~~~~l~~L~~L~ 484 (629)
.|++++|.. ..++ ..+..+++|+.|++++|......|. .+..+++|+.|+
T Consensus 119 ~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCCcC-CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 555554442 2222 2455555555555555443222222 245566666665
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=3.2e-10 Score=101.82 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=82.9
Q ss_pred ccEEEcCCCCccccccccCCCCccceeecccCCCccccch-hhccCCCccEeccCCccccccCCcc-ccccCcccEEEec
Q 048833 338 LRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLETLDLAGCLELEELPKD-IKYLVNLRVLVLT 415 (629)
Q Consensus 338 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~ 415 (629)
.+.++++++.+..+|..+. ++|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECC
Confidence 4667777777777775543 678888888764 444443 4577788888888876 45555543 5777788888887
Q ss_pred CcccccCcc-cCCCCCCCCeEeecCCCCcchhhh-hCCCCCccceEecccCCCC
Q 048833 416 TKQKSLQES-GIRSLGSLRSLKIFGCRDLEHLFE-EIDQLSVLRTLSIESCPRL 467 (629)
Q Consensus 416 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~ 467 (629)
+|.+...+. .+..+++|+.|++++|... .++. .+..+++|+.|++++|...
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 777765544 3566777777777777543 3433 3466777777777776543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=3.4e-13 Score=123.92 Aligned_cols=126 Identities=28% Similarity=0.354 Sum_probs=106.6
Q ss_pred hhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCccc
Q 048833 331 CISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLR 410 (629)
Q Consensus 331 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 410 (629)
.+..+++|++|++++|.+..+| .+..+++|++|++++| .+..+|..+..+++|++|++++| .+..+| .++.+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence 4778899999999999999988 8889999999999988 57788988888999999999998 666777 688999999
Q ss_pred EEEecCcccccCc--ccCCCCCCCCeEeecCCCCcchhhh----------hCCCCCccceEe
Q 048833 411 VLVLTTKQKSLQE--SGIRSLGSLRSLKIFGCRDLEHLFE----------EIDQLSVLRTLS 460 (629)
Q Consensus 411 ~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~l~~L~~L~ 460 (629)
+|++++|.+...+ ..+..+++|+.|++++|......|. .+..+++|+.|+
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999887654 3688999999999999975433332 267889999987
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=5.4e-10 Score=111.36 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=57.1
Q ss_pred CCCceEEEEecCCCCccchHHHHHhhhc-CccccEEEcCCCCccccccccCCCCccceeecccCCCccccc-hhhcc---
Q 048833 307 LGRVRTICFSTDDDEKTSQSFVESCISK-SQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLP-KSICE--- 381 (629)
Q Consensus 307 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~--- 381 (629)
+.+++.|.++++- ....+.. +.. +++|++|+|++|.+......-+.++.++++.+..+ .+| ..|.+
T Consensus 24 ~~~l~~L~l~g~i----~~~~~~~-l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGKL----NAEDFRH-LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEEE----CHHHHHH-HHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEET
T ss_pred hCceeEEEEeccc----cHHHHHH-HHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccc
Confidence 3456667776531 1111111 222 67788888888777621111112222344444332 122 23445
Q ss_pred -----CCCccEeccCCccccccCCc-cccccCcccEEEecCcccccC-cccCCCCCCCCeEe
Q 048833 382 -----LQSLETLDLAGCLELEELPK-DIKYLVNLRVLVLTTKQKSLQ-ESGIRSLGSLRSLK 436 (629)
Q Consensus 382 -----l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~ 436 (629)
|++|+.|+|.. .+..++. .|..+++|+.|++..|.+... +..+..+.++..+.
T Consensus 95 ~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp TEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred ccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 66677776665 3444433 356666777777666654322 23444444444433
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=1.1e-09 Score=98.38 Aligned_cols=125 Identities=22% Similarity=0.268 Sum_probs=98.9
Q ss_pred ccceeecccCCCccccchhhccCCCccEeccCCccccccCCc-cccccCcccEEEecCcccccCcc-cCCCCCCCCeEee
Q 048833 360 HMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPK-DIKYLVNLRVLVLTTKQKSLQES-GIRSLGSLRSLKI 437 (629)
Q Consensus 360 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l 437 (629)
+.+.++++++ .+..+|..+ .++|+.|++++|. +..+|. .++.+++|++|++++|.+...+. .+..+++|+.|++
T Consensus 8 ~~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSK-GLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSS-CCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCC-CCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 4577888876 577788654 4799999999984 556654 46899999999999999887654 4689999999999
Q ss_pred cCCCCcchhhhhCCCCCccceEecccCCCCcccccc-ccCCCccceeeccccc
Q 048833 438 FGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPA-IKYLSSLENLYLARCE 489 (629)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 489 (629)
++|......+..+..+++|+.|++++|. ++.+|.. +..+++|++|++++|.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 9997554444457899999999998875 4556554 5789999999999885
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=2.9e-09 Score=106.01 Aligned_cols=261 Identities=13% Similarity=0.110 Sum_probs=125.6
Q ss_pred CCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccccc-ccCC--------CCccceeecccCCCccccc-
Q 048833 307 LGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSR-KMGN--------LKHMRYLDLSRNSKIKKLP- 376 (629)
Q Consensus 307 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~--------l~~L~~L~l~~~~~~~~lp- 376 (629)
+++|+.|++++|........ ...++.++.+.+..+. +|. .|.+ +.+|+.|+|.. .+..++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~-----~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~ 117 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGK-----AGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIED 117 (329)
T ss_dssp CTTCCEEEEEEEEECCEEES-----SSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECT
T ss_pred hccCeEEecCcceeEEecCc-----cccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc--cccchhH
Confidence 77888888887665411100 0111223344444442 222 2445 77777777765 344444
Q ss_pred hhhccCCCccEeccCCccccccCCccccccCcccEEEecCccc-----ccCcccCCCCCCCC-eEeecCCCCcchh-hhh
Q 048833 377 KSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQK-----SLQESGIRSLGSLR-SLKIFGCRDLEHL-FEE 449 (629)
Q Consensus 377 ~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~-----~~~~~~~~~l~~L~-~L~l~~~~~~~~~-~~~ 449 (629)
..|.+|++|+.+++.+|.....-+..+..+.++..+....... ......+..+.+|+ .+.+.....+... ...
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~ 197 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA 197 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence 3466777777777776533333334455555555554443211 01112233334444 3333322221111 111
Q ss_pred CCCCCccceEecccCCCCccccccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccc
Q 048833 450 IDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLEL 529 (629)
Q Consensus 450 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 529 (629)
-....++..+.+.+.-...........+++|+++++.+|....+. ...+..+.+|+.+.+.+ +++.+
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~-----------~~aF~~~~~L~~l~l~~--ni~~I 264 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP-----------DFTFAQKKYLLKIKLPH--NLKTI 264 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC-----------TTTTTTCTTCCEEECCT--TCCEE
T ss_pred ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec-----------HhhhhCCCCCCEEECCc--cccee
Confidence 112233444443332111111111112444555555443221111 11223334455555544 24455
Q ss_pred hhhhhcCCCCCcc-EEEecCCCCCccCC-cCCCCCCCcCeeecccCccCccCC-cCCCCCCCcCeEee
Q 048833 530 PQWLLQGSTDTLR-DLFIVSCPNFMALP-RSLKDLEALETLVIARCPKLSSLP-EGMHHVTTLKLLTI 594 (629)
Q Consensus 530 ~~~~~~~~~~~L~-~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l 594 (629)
+...+ ..+++|+ .+.+.+ .++.++ ..|.++++|+.|++.++ .++.++ ..|.++++|+.+..
T Consensus 265 ~~~aF-~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 265 GQRVF-SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTTT-TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred hHHHh-hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 54443 4567788 888876 455554 66888999999999874 566655 46788888888753
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=4.6e-08 Score=99.54 Aligned_cols=242 Identities=14% Similarity=0.168 Sum_probs=127.4
Q ss_pred hhcCccccEEEcCCCCccccccc-cCCCCccceeecccCCCccccc-hhhccCCCccEeccCCccccccCCccccccCcc
Q 048833 332 ISKSQFLRVLNLSESSIEVCSRK-MGNLKHMRYLDLSRNSKIKKLP-KSICELQSLETLDLAGCLELEELPKDIKYLVNL 409 (629)
Q Consensus 332 ~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L 409 (629)
|.++ .|+.+.+..+ +..++.. |.+ .+|+.+.+.. .+..++ ..|.+|++|+.+++..| .+..+|...-...+|
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGI 205 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCC
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeeccc
Confidence 4444 4777776654 5555443 444 3577777764 344443 45677777777777764 556666554445777
Q ss_pred cEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhh-hhCCCCCccceEecccCCCCccc-cccccCCCccceeeccc
Q 048833 410 RVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLF-EEIDQLSVLRTLSIESCPRLISL-PPAIKYLSSLENLYLAR 487 (629)
Q Consensus 410 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~ 487 (629)
+.+.+..+-.......|..+++|+.+.+..+ +..+. ..|.. .+|+.+.+.. .++.+ ..+|..|++|+.+.+.+
T Consensus 206 ~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 206 EEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEES
T ss_pred CEEEeCCchheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCC
Confidence 7777775533344456777777887777653 22222 23444 6777777743 24444 34577788888888766
Q ss_pred cccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCC-cCCCCCCCcC
Q 048833 488 CESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALP-RSLKDLEALE 566 (629)
Q Consensus 488 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~ 566 (629)
+....... .......+..+++|+.+.+.+ .++.++...+ ..+.+|+.+.|..+ ++.++ ..|.++ +|+
T Consensus 281 ~~~~~~~~------~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~ 348 (401)
T 4fdw_A 281 STFNDDPE------AMIHPYCLEGCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPAN--VTQINFSAFNNT-GIK 348 (401)
T ss_dssp SCCCCCTT------CEECTTTTTTCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECTT--CCEECTTSSSSS-CCC
T ss_pred ccccCCcc------cEECHHHhhCCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECcc--ccEEcHHhCCCC-CCC
Confidence 53210000 000112233444555555542 3444443332 34456666666432 34332 345555 666
Q ss_pred eeecccCccCccCCcCCCCCC-CcCeEeeeC
Q 048833 567 TLVIARCPKLSSLPEGMHHVT-TLKLLTIGG 596 (629)
Q Consensus 567 ~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~ 596 (629)
.+.+.++..-...+..+.+++ .++.|.+..
T Consensus 349 ~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 349 EVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp EEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred EEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 666666432222223344443 455555543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.94 E-value=3.3e-09 Score=94.23 Aligned_cols=100 Identities=25% Similarity=0.276 Sum_probs=70.1
Q ss_pred ccEEEcCCCCccccccccCCCCccceeecccCCCcccc-chhhccCCCccEeccCCccccccCCcc-ccccCcccEEEec
Q 048833 338 LRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLETLDLAGCLELEELPKD-IKYLVNLRVLVLT 415 (629)
Q Consensus 338 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~ 415 (629)
.+.++++++.+..+|..+. .+|++|+|++|. +..+ |..+.++++|++|+|++| .+..+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 5678888888888887663 778888888774 4444 666778888888888887 45555554 4677777777777
Q ss_pred CcccccCcc-cCCCCCCCCeEeecCCC
Q 048833 416 TKQKSLQES-GIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 416 ~~~~~~~~~-~~~~l~~L~~L~l~~~~ 441 (629)
+|.+...+. .+..+++|+.|++++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 777665544 35666666666666664
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=3.7e-09 Score=94.26 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=65.5
Q ss_pred cEEEcCCCCccccccccCCCCccceeecccCCCccccchhhccCCCccEeccCCccccccCCcc-ccccCcccEEEecCc
Q 048833 339 RVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKD-IKYLVNLRVLVLTTK 417 (629)
Q Consensus 339 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~ 417 (629)
+.++++++.+..+|..+. .+|++|+|++|......|..+.++++|++|+|++| .+..+|.. +..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 567777777777777654 67777888776433333556777777777777776 55556554 466777777777777
Q ss_pred ccccCccc-CCCCCCCCeEeecCCC
Q 048833 418 QKSLQESG-IRSLGSLRSLKIFGCR 441 (629)
Q Consensus 418 ~~~~~~~~-~~~l~~L~~L~l~~~~ 441 (629)
.+...+.. +..+++|+.|++++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 66655443 5556666666666654
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.81 E-value=1.4e-07 Score=95.88 Aligned_cols=242 Identities=10% Similarity=0.145 Sum_probs=159.8
Q ss_pred hhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcccccc-ccCCCCccceeecccCCCccccchhhc
Q 048833 302 SLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIEVCSR-KMGNLKHMRYLDLSRNSKIKKLPKSIC 380 (629)
Q Consensus 302 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~~~ 380 (629)
..+..+ +|+.+.+..+ ....... +|.++ .|+.+.+.. .+..++. .|.++.+|+.+++..| .+..+|...-
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~----aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF 200 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDM----AFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTF 200 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTT----TTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTT
T ss_pred hhcccC-CccEEEeCCC-ccEECHH----hcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhE
Confidence 345554 6888887654 3333332 35554 588888876 6666654 4888899999999876 5677766544
Q ss_pred cCCCccEeccCCccccccCC-ccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchh-hhhCCCCCccce
Q 048833 381 ELQSLETLDLAGCLELEELP-KDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHL-FEEIDQLSVLRT 458 (629)
Q Consensus 381 ~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~ 458 (629)
.+.+|+.+.+..+ +..++ ..+.++++|+.+.+..+-.......|.. .+|+.+.+..+ +..+ ...|..|++|+.
T Consensus 201 ~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~ 275 (401)
T 4fdw_A 201 VYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAE 275 (401)
T ss_dssp TTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCE
T ss_pred eecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCE
Confidence 5788999998753 55554 3577888999999887643344445555 78999988543 2333 456888999999
Q ss_pred EecccCCCC----ccc-cccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhh
Q 048833 459 LSIESCPRL----ISL-PPAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWL 533 (629)
Q Consensus 459 L~l~~~~~~----~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 533 (629)
+.+.++... ..+ +..|..|++|+.+.+..+ +... ....+..+.+|+.+.+.. .++.++...
T Consensus 276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I----------~~~aF~~c~~L~~l~lp~--~l~~I~~~a 341 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRIL----------GQGLLGGNRKVTQLTIPA--NVTQINFSA 341 (401)
T ss_dssp EEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEE----------CTTTTTTCCSCCEEEECT--TCCEECTTS
T ss_pred EEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEE----------hhhhhcCCCCccEEEECc--cccEEcHHh
Confidence 998765432 123 356888999999988742 2211 122345567888888855 466666655
Q ss_pred hcCCCCCccEEEecCCCCCccCCcCCCCCC-CcCeeecccC
Q 048833 534 LQGSTDTLRDLFIVSCPNFMALPRSLKDLE-ALETLVIARC 573 (629)
Q Consensus 534 ~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~c 573 (629)
+. .+ +|+.+.+.++..-...+..+.+++ +++.|.+-..
T Consensus 342 F~-~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 342 FN-NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SS-SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CC-CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 53 44 899999998854443345566664 6788877663
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=1.6e-08 Score=89.77 Aligned_cols=103 Identities=19% Similarity=0.166 Sum_probs=68.7
Q ss_pred ccceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCccc-CCCCCCCCeEeec
Q 048833 360 HMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESG-IRSLGSLRSLKIF 438 (629)
Q Consensus 360 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~ 438 (629)
..+.++++++ .+..+|..+ .++|++|+|++|......|..+..+++|++|++++|.+...+.. +..+++|+.|+++
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3567888876 567777655 37788888888743333356677888888888888877665443 4677777777777
Q ss_pred CCCCcchhhhhCCCCCccceEecccCC
Q 048833 439 GCRDLEHLFEEIDQLSVLRTLSIESCP 465 (629)
Q Consensus 439 ~~~~~~~~~~~~~~l~~L~~L~l~~~~ 465 (629)
+|......+..+..+++|+.|++++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 776433223346677777777776664
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.80 E-value=1.7e-08 Score=89.99 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=70.5
Q ss_pred cceeecccCCCccccchhhccCCCccEeccCCccccccCCccccccCcccEEEecCcccccCccc-CCCCCCCCeEeecC
Q 048833 361 MRYLDLSRNSKIKKLPKSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTKQKSLQESG-IRSLGSLRSLKIFG 439 (629)
Q Consensus 361 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~ 439 (629)
-+.++++++ .+..+|..+. ++|+.|+|++|......|..+..+++|++|++++|.+...+.. +..+++|+.|++++
T Consensus 14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888876 5677887654 7888888888743333466678888888888888877766543 46777777777777
Q ss_pred CCCcchhhh-hCCCCCccceEecccCC
Q 048833 440 CRDLEHLFE-EIDQLSVLRTLSIESCP 465 (629)
Q Consensus 440 ~~~~~~~~~-~~~~l~~L~~L~l~~~~ 465 (629)
|... .++. .+..+++|+.|++++|.
T Consensus 91 N~l~-~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred Cccc-eeCHHHhccccCCCEEEeCCCC
Confidence 7643 3443 36677777777777664
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.73 E-value=4e-09 Score=106.36 Aligned_cols=157 Identities=15% Similarity=0.094 Sum_probs=76.8
Q ss_pred CCceEEEEecCCCCccchHHHHHhhhcC-ccccEEEcCCCCccc--cccccCCCCccceeecccCCCccccchhh-----
Q 048833 308 GRVRTICFSTDDDEKTSQSFVESCISKS-QFLRVLNLSESSIEV--CSRKMGNLKHMRYLDLSRNSKIKKLPKSI----- 379 (629)
Q Consensus 308 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~lp~~~----- 379 (629)
+.++.|++++|.+.......+...+... +.|+.|+|++|.+.. +......+.+|++|+|++|.........+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3456666666655544444343333322 466666666666542 11112234566666666663222211222
Q ss_pred ccCCCccEeccCCccccc-----cCCccccccCcccEEEecCcccccC-----cccCCCCCCCCeEeecCCCCcc----h
Q 048833 380 CELQSLETLDLAGCLELE-----ELPKDIKYLVNLRVLVLTTKQKSLQ-----ESGIRSLGSLRSLKIFGCRDLE----H 445 (629)
Q Consensus 380 ~~l~~L~~L~l~~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~----~ 445 (629)
...++|++|+|++|. +. .++..+..+++|++|++++|.+... ...+...++|+.|++++|.... .
T Consensus 152 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 134566666666663 22 1333345556666666666654421 1233444556666666555322 2
Q ss_pred hhhhCCCCCccceEecccCC
Q 048833 446 LFEEIDQLSVLRTLSIESCP 465 (629)
Q Consensus 446 ~~~~~~~l~~L~~L~l~~~~ 465 (629)
+...+...++|++|++++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 33334444556666665554
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=1.2e-07 Score=95.13 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=61.7
Q ss_pred EEcCCC-CccccccccCCCCccceeeccc-CCCccccc-hhhccCCCccEeccCCccccccCCccccccCcccEEEecCc
Q 048833 341 LNLSES-SIEVCSRKMGNLKHMRYLDLSR-NSKIKKLP-KSICELQSLETLDLAGCLELEELPKDIKYLVNLRVLVLTTK 417 (629)
Q Consensus 341 L~l~~~-~~~~l~~~~~~l~~L~~L~l~~-~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 417 (629)
++.+++ .+..+|. +..+.+|++|+|++ | .+..+| ..|++|++|+.|+|++|......|..|..+++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 456665 6667776 77777777777765 4 455444 45667777777777776433333445677777777777777
Q ss_pred ccccCcccCCCCCCCCeEeecCCC
Q 048833 418 QKSLQESGIRSLGSLRSLKIFGCR 441 (629)
Q Consensus 418 ~~~~~~~~~~~l~~L~~L~l~~~~ 441 (629)
.+...+..+.....|+.|++.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 766555443333337777776665
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=1.1e-08 Score=103.06 Aligned_cols=156 Identities=19% Similarity=0.092 Sum_probs=108.8
Q ss_pred CccccEEEcCCCCcccc-----ccccC-CCCccceeecccCCCcccc-chhhccCCCccEeccCCccccccCCccc----
Q 048833 335 SQFLRVLNLSESSIEVC-----SRKMG-NLKHMRYLDLSRNSKIKKL-PKSICELQSLETLDLAGCLELEELPKDI---- 403 (629)
Q Consensus 335 ~~~L~~L~l~~~~~~~l-----~~~~~-~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~i---- 403 (629)
++.|+.|++++|.+... ...+. ...+|+.|+|++|...... ......+++|+.|+|++|.....-...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999998632 22233 3379999999998533322 2223356789999999984322222222
Q ss_pred -cccCcccEEEecCcccccC-----cccCCCCCCCCeEeecCCCCcc----hhhhhCCCCCccceEecccCCCCc----c
Q 048833 404 -KYLVNLRVLVLTTKQKSLQ-----ESGIRSLGSLRSLKIFGCRDLE----HLFEEIDQLSVLRTLSIESCPRLI----S 469 (629)
Q Consensus 404 -~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~----~ 469 (629)
...++|++|++++|.+... ...+..+++|++|++++|.... .++..+...++|+.|++++|.... .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2468899999999987542 2344678899999999998532 345667788899999999886433 3
Q ss_pred ccccccCCCccceeecccccc
Q 048833 470 LPPAIKYLSSLENLYLARCES 490 (629)
Q Consensus 470 lp~~~~~l~~L~~L~l~~~~~ 490 (629)
++..+...++|++|++++|..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHhCCCCCEEeccCCCC
Confidence 445566778999999999853
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.46 E-value=9.6e-06 Score=82.63 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=47.7
Q ss_pred CCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCC-cCCCCCCCcCeeecccCccCccCC-cCCCCCC
Q 048833 510 NTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALP-RSLKDLEALETLVIARCPKLSSLP-EGMHHVT 587 (629)
Q Consensus 510 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~ 587 (629)
..+.+|+.+.+.+ .++.++...+ ..+.+|+.+.+.. .++.++ ..|.++.+|+.+.+..+ ++.++ ..|.+++
T Consensus 294 ~~~~~L~~i~l~~--~i~~I~~~aF-~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVKFIGEEAF-ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCI 366 (394)
T ss_dssp TTCTTCCEEEECT--TCCEECTTTT-TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCT
T ss_pred ccccccccccccc--ccceechhhh-cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCC
Confidence 3445666666643 3444544433 3456777777753 245443 45667778888877653 55544 4567777
Q ss_pred CcCeEeeeC
Q 048833 588 TLKLLTIGG 596 (629)
Q Consensus 588 ~L~~L~l~~ 596 (629)
+|+.+.+..
T Consensus 367 ~L~~i~lp~ 375 (394)
T 4fs7_A 367 NLKKVELPK 375 (394)
T ss_dssp TCCEEEEEG
T ss_pred CCCEEEECC
Confidence 788777754
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.41 E-value=1.7e-07 Score=93.59 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=31.0
Q ss_pred CCCCCCeEeecCCCCcchhhhh---CCCCCccceEecccCCCCc----cccccccCCCccceeecccc
Q 048833 428 SLGSLRSLKIFGCRDLEHLFEE---IDQLSVLRTLSIESCPRLI----SLPPAIKYLSSLENLYLARC 488 (629)
Q Consensus 428 ~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~ 488 (629)
.+++|+.|++.+|......+.. ...+++|++|+|+.|.... .++..+..+++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 3566666666665543221111 1245666677665543221 13333345566666666655
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.38 E-value=7.1e-07 Score=89.39 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=77.8
Q ss_pred eeecccCCCccccchhhccCCCccEeccCC-ccccccCC-ccccccCcccEEEecCcccccCcc-cCCCCCCCCeEeecC
Q 048833 363 YLDLSRNSKIKKLPKSICELQSLETLDLAG-CLELEELP-KDIKYLVNLRVLVLTTKQKSLQES-GIRSLGSLRSLKIFG 439 (629)
Q Consensus 363 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~-~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~ 439 (629)
.++.++++.+..+|. +..+++|+.|+|++ | .+..+| ..|+.+++|++|+|++|.+...++ .|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 467776546788999 99999999999996 5 566666 568999999999999998876644 578899999999999
Q ss_pred CCCcchhhhh-CCCCCccceEecccCCC
Q 048833 440 CRDLEHLFEE-IDQLSVLRTLSIESCPR 466 (629)
Q Consensus 440 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 466 (629)
|.. ..+|.. +..++ |+.|++.+|..
T Consensus 90 N~l-~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NAL-ESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCC-SCCCSTTTCSCC-CCEEECCSSCC
T ss_pred Ccc-ceeCHHHcccCC-ceEEEeeCCCc
Confidence 874 445544 44444 99999988763
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=3.4e-07 Score=91.40 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=101.6
Q ss_pred ccCCCCceEEEEecCCCCccc-----hHHHHHhhhcCccccEEEcCCCCccccccccCCCCccceeecccCCCccccchh
Q 048833 304 LSDLGRVRTICFSTDDDEKTS-----QSFVESCISKSQFLRVLNLSESSIEVCSRKMGNLKHMRYLDLSRNSKIKKLPKS 378 (629)
Q Consensus 304 ~~~~~~l~~L~l~~~~~~~~~-----~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~ 378 (629)
..++++|+.|.+......... ...+...+..+++|+.|.++++.-..++. + .+++|+.|+|..|.........
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 445677888877553221100 11133456778899999998874234444 3 3789999999877432222233
Q ss_pred hc--cCCCccEeccCCccc-------cccCCccc--cccCcccEEEecCcccccC----cccCCCCCCCCeEeecCCCCc
Q 048833 379 IC--ELQSLETLDLAGCLE-------LEELPKDI--KYLVNLRVLVLTTKQKSLQ----ESGIRSLGSLRSLKIFGCRDL 443 (629)
Q Consensus 379 ~~--~l~~L~~L~l~~~~~-------~~~lp~~i--~~l~~L~~L~l~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~ 443 (629)
+. .+++|+.|+|+.+.. +..+...+ ..+++|++|.+.+|.+... ......+++|++|+++.|...
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 43 789999999863211 21222222 3579999999998876531 111246889999999888743
Q ss_pred c----hhhhhCCCCCccceEecccCCC
Q 048833 444 E----HLFEEIDQLSVLRTLSIESCPR 466 (629)
Q Consensus 444 ~----~~~~~~~~l~~L~~L~l~~~~~ 466 (629)
. .++..+..+++|+.|++++|..
T Consensus 293 d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 293 DEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred hHHHHHHHhhcccCCcceEEECCCCcC
Confidence 3 2444456789999999988753
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.18 E-value=4.6e-05 Score=77.51 Aligned_cols=164 Identities=12% Similarity=0.091 Sum_probs=84.1
Q ss_pred cCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEecccCCCCccccccccCCCccceeec
Q 048833 406 LVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSIESCPRLISLPPAIKYLSSLENLYL 485 (629)
Q Consensus 406 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 485 (629)
..+|+.+.+...........+..+.+|+.+.+..+. ..-....+..+..++.+...... -....+..+.+|+.+.+
T Consensus 229 ~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 229 KTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKL 304 (394)
T ss_dssp TCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEE
T ss_pred cCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCcee---ecccccccccccccccc
Confidence 344555544433222223344455555555554332 11112234445555555442211 11123455666666665
Q ss_pred cccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCCCccCC-cCCCCCCC
Q 048833 486 ARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALP-RSLKDLEA 564 (629)
Q Consensus 486 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~ 564 (629)
..+ +... ....+..+.+|+.+.+.+ .++.++...+ ..+.+|+.+.+..+ ++.++ ..|.++++
T Consensus 305 ~~~--i~~I----------~~~aF~~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~~--l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 305 LDS--VKFI----------GEEAFESCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPLS--LRKIGANAFQGCIN 367 (394)
T ss_dssp CTT--CCEE----------CTTTTTTCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCTT--CCEECTTTBTTCTT
T ss_pred ccc--ccee----------chhhhcCCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECcc--ccEehHHHhhCCCC
Confidence 432 1100 112234455677776643 3555554443 45678888888653 55553 45788999
Q ss_pred cCeeecccCccCccCCcCCCCCCCcCeE
Q 048833 565 LETLVIARCPKLSSLPEGMHHVTTLKLL 592 (629)
Q Consensus 565 L~~L~l~~c~~l~~lp~~~~~l~~L~~L 592 (629)
|+.+.+.. .++.+...+.++++|+.+
T Consensus 368 L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 368 LKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred CCEEEECC--CCEEhhheecCCCCCcEE
Confidence 99999976 355555556667777654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=3.6e-06 Score=75.57 Aligned_cols=89 Identities=7% Similarity=0.092 Sum_probs=43.8
Q ss_pred hhccCCCCceEEEEecC-CCCccchHHHHHhhhcCccccEEEcCCCCccc-----cccccCCCCccceeecccCCCcc--
Q 048833 302 SLLSDLGRVRTICFSTD-DDEKTSQSFVESCISKSQFLRVLNLSESSIEV-----CSRKMGNLKHMRYLDLSRNSKIK-- 373 (629)
Q Consensus 302 ~~~~~~~~l~~L~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~-- 373 (629)
..+...+.|+.|++++| .++......+...+...+.|++|+|++|.+.. +...+...++|++|+|++|....
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 44455566666666655 55444444444445555556666666665531 22223334455555555553211
Q ss_pred --ccchhhccCCCccEecc
Q 048833 374 --KLPKSICELQSLETLDL 390 (629)
Q Consensus 374 --~lp~~~~~l~~L~~L~l 390 (629)
.+...+...+.|++|+|
T Consensus 110 ~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHhCCCceEEEe
Confidence 13333444455555555
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.01 E-value=0.00031 Score=71.30 Aligned_cols=108 Identities=16% Similarity=0.241 Sum_probs=72.6
Q ss_pred ccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCcccchhhhhcCCCCCccEEEecCCCC
Q 048833 472 PAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLELPQWLLQGSTDTLRDLFIVSCPN 551 (629)
Q Consensus 472 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 551 (629)
.+|..+.+|+.+.+..... . ........+..|+.+.+.. .++.++...+ ..+.+|+.+.|..+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~-~-----------I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF-~~c~~L~~i~lp~~-- 321 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV-S-----------IGTGAFMNCPALQDIEFSS--RITELPESVF-AGCISLKSIDIPEG-- 321 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC-E-----------ECTTTTTTCTTCCEEECCT--TCCEECTTTT-TTCTTCCEEECCTT--
T ss_pred ceeeecccccEEecccccc-e-----------ecCcccccccccccccCCC--cccccCceee-cCCCCcCEEEeCCc--
Confidence 3466778888887754210 0 0122334566788777753 5666666554 45788999988653
Q ss_pred CccCC-cCCCCCCCcCeeecccCccCccCC-cCCCCCCCcCeEeeeCCC
Q 048833 552 FMALP-RSLKDLEALETLVIARCPKLSSLP-EGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 552 ~~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~ 598 (629)
++.+. ..|.++.+|+.+.|.. .++.++ ..|.++++|+.+++.++.
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 55553 4578899999999975 366665 457889999999998764
No 157
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.98 E-value=4.4e-05 Score=76.47 Aligned_cols=214 Identities=14% Similarity=0.101 Sum_probs=121.1
Q ss_pred cHHHHHHHHHHHcCCceEEEEEecCCCCC----hhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhh----c---ccC-C-
Q 048833 15 NLDQLQKVLRYSLKGKRYLLVMDDVWNED----PEAWCKLKSLLLGGANGSKILVTTRSRKVASIM----G---TRG-G- 81 (629)
Q Consensus 15 ~~~~~~~~l~~~L~~k~~LivlDdv~~~~----~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~----~---~~~-~- 81 (629)
.++++.+.+.+.-+ ++++|||||++.-+ .+.+..+...+. ...+.++|+|+|.......+ . ... .
T Consensus 123 ~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~ 200 (357)
T 2fna_A 123 SFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRA 200 (357)
T ss_dssp CHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCC
T ss_pred hHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCc
Confidence 45666666665443 59999999996522 122233333322 23478899999987653322 1 011 1
Q ss_pred CCceeCCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCCCCHHHH-HHHhhhhccccc
Q 048833 82 TTGFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDSTDEHFW-EYVRDNEIWQLE 160 (629)
Q Consensus 82 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~~~~~w-~~~~~~~~~~~~ 160 (629)
...+++.+|+.+|+.+++....-..+.... .. .++++.|+|.|+++..++..+........| ..+.+..
T Consensus 201 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----- 270 (357)
T 2fna_A 201 FSTVELKPFSREEAIEFLRRGFQEADIDFK-DY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----- 270 (357)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----
T ss_pred cceeecCCCCHHHHHHHHHHHHHHcCCCCC-cH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-----
Confidence 246899999999999999874321122111 21 689999999999999998876532222222 1111100
Q ss_pred cccCCcchhh-hccc--ccCChhhhhhhhhhccCCCCceeChHhHHHHHH-HcCCcccCCCCccHHHHHHHHHHHHHhCC
Q 048833 161 QKESGILPAL-RLSY--DQLPPRLKQCVAYCSIFPKDFKFDSYDLVQFWM-AHGLLQSHNKKEDLEDIGMRYLKELLSRS 236 (629)
Q Consensus 161 ~~~~~~~~~l-~~sy--~~L~~~~k~~fl~~~~fp~~~~~~~~~l~~~wi-~eg~i~~~~~~~~~~~~~~~~l~~L~~r~ 236 (629)
...+...+ .+.+ ..+++..+..+..+|+ +. +...+..... ..|. .........++..|.+.+
T Consensus 271 --~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~g 336 (357)
T 2fna_A 271 --KKLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHS 336 (357)
T ss_dssp --HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCC
Confidence 00011111 1111 1678889999999887 22 4444433221 1120 001244677899999999
Q ss_pred ceeecccCCCCceEEEEE-eChhHHHH
Q 048833 237 FFQDLTFGMFGLEVLTFK-MHDLMHDL 262 (629)
Q Consensus 237 ll~~~~~~~~~~~~~~~~-mhd~~~~~ 262 (629)
++.... + .++ .|+++++.
T Consensus 337 li~~~~----~----~y~f~~~~~~~~ 355 (357)
T 2fna_A 337 WIIKEG----E----KYCPSEPLISLA 355 (357)
T ss_dssp SEEESS----S----CEEESSHHHHHH
T ss_pred CEEecC----C----EEEecCHHHHHh
Confidence 987642 1 344 46777654
No 158
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.96 E-value=0.00023 Score=70.88 Aligned_cols=217 Identities=12% Similarity=0.070 Sum_probs=122.2
Q ss_pred CcHHHHHHHHHHHcCC-ceEEEEEecCCCCC-------hhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhh----cc---
Q 048833 14 SNLDQLQKVLRYSLKG-KRYLLVMDDVWNED-------PEAWCKLKSLLLGGANGSKILVTTRSRKVASIM----GT--- 78 (629)
Q Consensus 14 ~~~~~~~~~l~~~L~~-k~~LivlDdv~~~~-------~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~----~~--- 78 (629)
.+.+++.+.+.+..+. ++++||+||++.-+ ...+..+...+.. ..+.++|+|++.......+ ..
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~ 189 (350)
T 2qen_A 111 LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESP 189 (350)
T ss_dssp CCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTST
T ss_pred chHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCc
Confidence 3456666666665543 38999999996532 1223444433322 2578899999887643321 10
Q ss_pred -cCC-CCceeCCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCCCCHH-HHHHHhhhh
Q 048833 79 -RGG-TTGFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDSTDEH-FWEYVRDNE 155 (629)
Q Consensus 79 -~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~~~~~-~w~~~~~~~ 155 (629)
.+. ...+++.+|+.+|+.+++....-..+.... ...+.++++.|+|.|+++..++..+....... ....+.+..
T Consensus 190 l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (350)
T 2qen_A 190 LYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA 266 (350)
T ss_dssp TTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH
Confidence 011 136999999999999999764322122212 24567899999999999999987653211111 111111100
Q ss_pred ccccccccCCcc-hhhhcccccCChhhhhhhhhhccCCCCceeChHhHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHh
Q 048833 156 IWQLEQKESGIL-PALRLSYDQLPPRLKQCVAYCSIFPKDFKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLS 234 (629)
Q Consensus 156 ~~~~~~~~~~~~-~~l~~sy~~L~~~~k~~fl~~~~fp~~~~~~~~~l~~~wi~eg~i~~~~~~~~~~~~~~~~l~~L~~ 234 (629)
...+. .+-.+.+ . ++..+..+..+|. . ..+...+........ +. ........+++.|.+
T Consensus 267 -------~~~~~~~l~~l~~-~-~~~~~~~l~~la~-g---~~~~~~l~~~~~~~~------~~-~~~~~~~~~l~~L~~ 326 (350)
T 2qen_A 267 -------KGLIMGELEELRR-R-SPRYVDILRAIAL-G---YNRWSLIRDYLAVKG------TK-IPEPRLYALLENLKK 326 (350)
T ss_dssp -------HHHHHHHHHHHHH-H-CHHHHHHHHHHHT-T---CCSHHHHHHHHHHTT------CC-CCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHh-C-ChhHHHHHHHHHh-C---CCCHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHh
Confidence 00000 0111112 2 7788889888887 2 134445444332211 00 112446788999999
Q ss_pred CCceeecccCCCCceEEEEEe-ChhHHHH
Q 048833 235 RSFFQDLTFGMFGLEVLTFKM-HDLMHDL 262 (629)
Q Consensus 235 r~ll~~~~~~~~~~~~~~~~m-hd~~~~~ 262 (629)
.+++.... + .+.+ |.+++..
T Consensus 327 ~gli~~~~----~----~y~~~~p~~~~~ 347 (350)
T 2qen_A 327 MNWIVEED----N----TYKIADPVVATV 347 (350)
T ss_dssp TTSEEEET----T----EEEESSHHHHHH
T ss_pred CCCEEecC----C----EEEEecHHHHHH
Confidence 99997641 2 3444 5666654
No 159
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.95 E-value=0.0001 Score=75.40 Aligned_cols=206 Identities=13% Similarity=0.023 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHcC--CceEEEEEecCCCC------ChhhHHHHHHhhCCC---C--CCcEEEEEcCChHHHHhhc-----
Q 048833 16 LDQLQKVLRYSLK--GKRYLLVMDDVWNE------DPEAWCKLKSLLLGG---A--NGSKILVTTRSRKVASIMG----- 77 (629)
Q Consensus 16 ~~~~~~~l~~~L~--~k~~LivlDdv~~~------~~~~~~~~~~~~~~~---~--~gs~iivTTR~~~v~~~~~----- 77 (629)
.+++...+.+.+. +++++|||||+|.- +.+.+..+...+... + .+..||+||++.++...+.
T Consensus 122 ~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~ 201 (412)
T 1w5s_A 122 ALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQ 201 (412)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcch
Confidence 4555566666664 67999999999652 223444333333221 2 3445888998766443221
Q ss_pred --ccCCCCceeCCCCChhhHHHHHHHhh---cccCCCCChhHHHHHHHHHHhcC------CCchHHHHHHhhhc------
Q 048833 78 --TRGGTTGFNLQGLPFEDCLSLFMKCA---FKEERDKHPNLVKIGVEIVKKCG------GIPLAVRTLGSLLY------ 140 (629)
Q Consensus 78 --~~~~~~~~~l~~L~~~~a~~Lf~~~a---~~~~~~~~~~~~~~~~~i~~~c~------glPLal~~~g~~L~------ 140 (629)
.... ..+++++++.++++++|...+ +... ... ......+++.|+ |.|..+..+.....
T Consensus 202 ~~~~~~-~~i~l~~l~~~e~~~ll~~~~~~~~~~~-~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~ 276 (412)
T 1w5s_A 202 VESQIG-FKLHLPAYKSRELYTILEQRAELGLRDT-VWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAM 276 (412)
T ss_dssp HHTTCS-EEEECCCCCHHHHHHHHHHHHHHHBCTT-SCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcC-CeeeeCCCCHHHHHHHHHHHHHhcCCCC-CCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHc
Confidence 1111 239999999999999997654 2211 112 245667888888 99976555443211
Q ss_pred CC--CCHHHHHHHhhhhccccccccCCc-chhhhcccccCChhhhhhhhhhccCC--CCceeChHhHHHHHH--H---cC
Q 048833 141 DS--TDEHFWEYVRDNEIWQLEQKESGI-LPALRLSYDQLPPRLKQCVAYCSIFP--KDFKFDSYDLVQFWM--A---HG 210 (629)
Q Consensus 141 ~~--~~~~~w~~~~~~~~~~~~~~~~~~-~~~l~~sy~~L~~~~k~~fl~~~~fp--~~~~~~~~~l~~~wi--~---eg 210 (629)
+. -+.+.+...... .. ...+.-++..||+..+.++..++.++ .+..+...++...+. + .|
T Consensus 277 ~~~~i~~~~v~~~~~~----------~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (412)
T 1w5s_A 277 GRDSLSEDLVRKAVSE----------NEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYN 346 (412)
T ss_dssp TCSSCCHHHHHHHHHH----------C------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHH----------HhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcC
Confidence 11 112222222111 01 23456678899999999998888653 233444444443332 1 12
Q ss_pred CcccCCCCccHHHHHHHHHHHHHhCCceeecc
Q 048833 211 LLQSHNKKEDLEDIGMRYLKELLSRSFFQDLT 242 (629)
Q Consensus 211 ~i~~~~~~~~~~~~~~~~l~~L~~r~ll~~~~ 242 (629)
. ..........++..|...+++....
T Consensus 347 ~------~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 347 V------KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp C------CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred C------CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 1 0011344667899999999997654
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=1e-05 Score=72.54 Aligned_cols=95 Identities=12% Similarity=0.165 Sum_probs=60.7
Q ss_pred hHHHHHhhhcCccccEEEcCCC-Ccc-----ccccccCCCCccceeecccCCCcc----ccchhhccCCCccEeccCCcc
Q 048833 325 QSFVESCISKSQFLRVLNLSES-SIE-----VCSRKMGNLKHMRYLDLSRNSKIK----KLPKSICELQSLETLDLAGCL 394 (629)
Q Consensus 325 ~~~~~~~~~~~~~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~ 394 (629)
...+...+...+.|+.|+|++| .+. .+...+...++|++|+|++|.... .+...+...++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4455667778888999999988 765 344456667888888888875322 234445566778888888773
Q ss_pred cccc----CCccccccCcccEEEe--cCccc
Q 048833 395 ELEE----LPKDIKYLVNLRVLVL--TTKQK 419 (629)
Q Consensus 395 ~~~~----lp~~i~~l~~L~~L~l--~~~~~ 419 (629)
.... +...+...++|++|++ ++|.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 2211 3344455556666666 44544
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.82 E-value=0.003 Score=63.93 Aligned_cols=288 Identities=9% Similarity=0.153 Sum_probs=152.3
Q ss_pred hhccCCC-CceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCC---cccccc-ccCCCCccceeecccCCCccccc
Q 048833 302 SLLSDLG-RVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESS---IEVCSR-KMGNLKHMRYLDLSRNSKIKKLP 376 (629)
Q Consensus 302 ~~~~~~~-~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp 376 (629)
.++..+. .|+++.+... ...... .+|.+|.+|+.+.+..+. ++.+.. .|.++.+|+.+.+..+ +..++
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~----~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~ 129 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGS----NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEID 129 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECT----TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEEC
T ss_pred hhccCCCCcCEEEEECCC-eeEEhH----HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceeh
Confidence 3455553 4777777542 333322 347777888888776542 444443 3666777777776543 44443
Q ss_pred -hhhccCCCccEeccCCccccccCC-ccccccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCC
Q 048833 377 -KSICELQSLETLDLAGCLELEELP-KDIKYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLS 454 (629)
Q Consensus 377 -~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 454 (629)
..+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+-.......+. ..+|+.+.+..... ..-...+..+.
T Consensus 130 ~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~ 205 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECF 205 (394)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCT
T ss_pred hhhhhhhcccccccccce--eeeecccceecccccccccccceeeEecccccc-ccceeEEEECCccc-ccccchhhhcc
Confidence 34667788888887642 33332 345677777777776543322223333 35677777654321 11223455566
Q ss_pred ccceEecccCCCCcccccccc--------------CCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEee
Q 048833 455 VLRTLSIESCPRLISLPPAIK--------------YLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFI 520 (629)
Q Consensus 455 ~L~~L~l~~~~~~~~lp~~~~--------------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 520 (629)
++......... .......+. ....+..+.+.. .. . ......+..+..|+.+.+
T Consensus 206 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--------~v--~--~i~~~aF~~c~~L~~i~l 272 (394)
T 4gt6_A 206 ALSTITSDSES-YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--------GV--A--RIETHAFDSCAYLASVKM 272 (394)
T ss_dssp TCCEEEECCSS-SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--------TE--E--EECTTTTTTCSSCCEEEC
T ss_pred ccceecccccc-cccccceeecccccccccccccccccccceEEcCC--------cc--e--EcccceeeecccccEEec
Confidence 66665543221 111111100 011111111110 00 0 001122344567777776
Q ss_pred ccccCcccchhhhhcCCCCCccEEEecCCCCCccCC-cCCCCCCCcCeeecccCccCccCC-cCCCCCCCcCeEeeeCCC
Q 048833 521 MEITQLLELPQWLLQGSTDTLRDLFIVSCPNFMALP-RSLKDLEALETLVIARCPKLSSLP-EGMHHVTTLKLLTIGGCP 598 (629)
Q Consensus 521 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~ 598 (629)
.+ .+..++...+ ..+++|+.+.+.. .+..++ ..|.++.+|+.+.|.. .++.+. ..|.++.+|+.+.+...
T Consensus 273 p~--~~~~I~~~aF-~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s- 344 (394)
T 4gt6_A 273 PD--SVVSIGTGAF-MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS- 344 (394)
T ss_dssp CT--TCCEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT-
T ss_pred cc--ccceecCccc-ccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc-
Confidence 54 3334444433 4568889888853 355555 4577899999999976 366654 46788999999988432
Q ss_pred ccccccCCCCCCCCCcccCCCceeeCCc
Q 048833 599 ALSERCKPPTGEDWPKISHIPQVYLDGE 626 (629)
Q Consensus 599 ~l~~~~~~~~~~~~~~i~~l~~v~~~~~ 626 (629)
++.. ....|.....|..|.+.++
T Consensus 345 -v~~I----~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 345 -VTKI----PESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp -CCBC----CGGGGTTCTTCCEEEESSC
T ss_pred -cCEE----hHhHhhCCCCCCEEEECCc
Confidence 2221 1123444455666666554
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=1.6e-05 Score=69.50 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=16.9
Q ss_pred CccceeecccCCCccccchhhccCCCccEeccCCcc
Q 048833 359 KHMRYLDLSRNSKIKKLPKSICELQSLETLDLAGCL 394 (629)
Q Consensus 359 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 394 (629)
.+|+.||+++|.....--..+.++++|++|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 345555665554222222234455555555555554
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=3.1e-05 Score=67.58 Aligned_cols=60 Identities=15% Similarity=0.296 Sum_probs=30.1
Q ss_pred cccEEEcCCCCccc-cccccCCCCccceeecccCCCccc-cchhhccC----CCccEeccCCcccc
Q 048833 337 FLRVLNLSESSIEV-CSRKMGNLKHMRYLDLSRNSKIKK-LPKSICEL----QSLETLDLAGCLEL 396 (629)
Q Consensus 337 ~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~~-lp~~~~~l----~~L~~L~l~~~~~~ 396 (629)
.|+.||+++|.++. --..+..+++|+.|+|++|..++. --..++.+ ++|++|+|++|..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 46666666666541 112345666666666666654432 11223332 24555555555433
No 164
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.50 E-value=0.00031 Score=65.80 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=77.4
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHH-HhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVA-SIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~-~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.+++.+||+||++.-+...+..+...+.....+.++|+||+..... ...... ...+++++++.++..+++...+...
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r--~~~i~l~~l~~~e~~~~l~~~~~~~ 201 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR--CLQFHLKALDVEQIRHQLEHILNEE 201 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHT
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHH--hhhccCCCCCHHHHHHHHHHHHHhc
Confidence 3568999999997766677778877776666788899999775421 122221 2579999999999999998877543
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLL 139 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L 139 (629)
+....+ .....+++.|+|.|..+..+....
T Consensus 202 ~~~~~~---~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 202 HIAHEP---RALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TCCBCH---HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCH---HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 332222 446789999999999988776544
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.46 E-value=0.013 Score=58.92 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=70.3
Q ss_pred CCCCCccceEecccCCCCcccc-ccccCCCccceeeccccccccccccccccCCCCCCCCCCCCCceeeEeeccccCccc
Q 048833 450 IDQLSVLRTLSIESCPRLISLP-PAIKYLSSLENLYLARCESLDLNLNMEIEGEGSHHDRKNTRPHLRRVFIMEITQLLE 528 (629)
Q Consensus 450 ~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 528 (629)
+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +... .......+..|+.+.+.. .+..
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I----------~~~aF~~~~~l~~i~l~~--~i~~ 276 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSI----------GSFLLQNCTALKTLNFYA--KVKT 276 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEE----------CTTTTTTCTTCCEEEECC--CCSE
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEe----------Cccccceeehhccccccc--ccee
Confidence 344555666555331 22222 33556666666666432 1100 112233455666666643 4555
Q ss_pred chhhhhcCCCCCccEEEecCCCCCccCC-cCCCCCCCcCeeecccCccCccCC-cCCCCCCCcCeEeee
Q 048833 529 LPQWLLQGSTDTLRDLFIVSCPNFMALP-RSLKDLEALETLVIARCPKLSSLP-EGMHHVTTLKLLTIG 595 (629)
Q Consensus 529 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~ 595 (629)
++...+ ..+.+|+.+.+.++ .++.++ ..|.++.+|+.+.|.. .++.++ ..|.++++|+.+.+.
T Consensus 277 i~~~aF-~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 277 VPYLLC-SGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECTTTT-TTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred cccccc-cccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 554443 45678888888654 344443 4577888888888864 355554 356777888887774
No 166
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.38 E-value=3.8e-05 Score=72.50 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=33.8
Q ss_pred ccCCCccEeccCCccccc--cCCccccccCcccEEEecCcccccCcccCCCCC--CCCeEeecCCCC
Q 048833 380 CELQSLETLDLAGCLELE--ELPKDIKYLVNLRVLVLTTKQKSLQESGIRSLG--SLRSLKIFGCRD 442 (629)
Q Consensus 380 ~~l~~L~~L~l~~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~--~L~~L~l~~~~~ 442 (629)
.++++|+.|+|++|.... .+|..+..+++|+.|+|++|.+... ..+..+. +|++|++.+|..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcC
Confidence 356777777777763222 3344455677777777777665543 1122222 555555555553
No 167
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.38 E-value=0.00018 Score=67.91 Aligned_cols=60 Identities=25% Similarity=0.273 Sum_probs=31.6
Q ss_pred hcCccccEEEcCCCCccccc---cccCCCCccceeecccCCCccccchhhccCC--CccEeccCCcc
Q 048833 333 SKSQFLRVLNLSESSIEVCS---RKMGNLKHMRYLDLSRNSKIKKLPKSICELQ--SLETLDLAGCL 394 (629)
Q Consensus 333 ~~~~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~l~~~~ 394 (629)
..++.|+.|+|++|.+..++ ..+..+++|++|+|++| .+..+. .+..+. +|++|+|++|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCc
Confidence 45566666666666665433 33445666666666655 333331 233333 56666666654
No 168
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.96 E-value=0.041 Score=55.22 Aligned_cols=208 Identities=10% Similarity=-0.018 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHcC--CceEEEEEecCCCCCh-----hhHHHHHHhhCCC--CCCcEEEEEcCChHHH----HhhcccCCC
Q 048833 16 LDQLQKVLRYSLK--GKRYLLVMDDVWNEDP-----EAWCKLKSLLLGG--ANGSKILVTTRSRKVA----SIMGTRGGT 82 (629)
Q Consensus 16 ~~~~~~~l~~~L~--~k~~LivlDdv~~~~~-----~~~~~~~~~~~~~--~~gs~iivTTR~~~v~----~~~~~~~~~ 82 (629)
..++.+.+.+.+. +++.+||||+++.-.. +....+....... ..+..+|.||+..+.. .........
T Consensus 114 ~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~ 193 (387)
T 2v1u_A 114 VGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGE 193 (387)
T ss_dssp HHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTS
T ss_pred HHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCC
Confidence 4555566666663 5689999999954211 1222222222221 4566888888776321 111121112
Q ss_pred CceeCCCCChhhHHHHHHHhhcc--cCCCCChhHHHHHHHHHHhcC---CCchH-HHHHHhhhc-----C--CCCHHHHH
Q 048833 83 TGFNLQGLPFEDCLSLFMKCAFK--EERDKHPNLVKIGVEIVKKCG---GIPLA-VRTLGSLLY-----D--STDEHFWE 149 (629)
Q Consensus 83 ~~~~l~~L~~~~a~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~~c~---glPLa-l~~~g~~L~-----~--~~~~~~w~ 149 (629)
..+.+++++.++..+++...+-. ......++ ....++++++ |.|.. +..+..+.. + .-+.+.+.
T Consensus 194 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 194 VELVFPPYTAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 47899999999999999887532 11112222 3456666666 99843 333332221 1 11333333
Q ss_pred HHhhhhccccccccCCcchhhhcccccCChhhhhhhhhhc-cCCCCceeChHhHHHHHH----HcCCcccCCCCccHHHH
Q 048833 150 YVRDNEIWQLEQKESGILPALRLSYDQLPPRLKQCVAYCS-IFPKDFKFDSYDLVQFWM----AHGLLQSHNKKEDLEDI 224 (629)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~-~fp~~~~~~~~~l~~~wi----~eg~i~~~~~~~~~~~~ 224 (629)
.+.... ....+.-++.+|++..+..++.++ .+.....+....+.+.+. ..|. .......
T Consensus 271 ~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 334 (387)
T 2v1u_A 271 SARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGL------EHVTLRR 334 (387)
T ss_dssp HHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTC------CCCCHHH
T ss_pred HHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCC------CCCCHHH
Confidence 332211 112355577889998888877776 443222344443333221 2231 1112456
Q ss_pred HHHHHHHHHhCCceeecc
Q 048833 225 GMRYLKELLSRSFFQDLT 242 (629)
Q Consensus 225 ~~~~l~~L~~r~ll~~~~ 242 (629)
+..++..|...+++....
T Consensus 335 ~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 335 VSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhCCCeEEEe
Confidence 788999999999998754
No 169
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.85 E-value=0.027 Score=56.62 Aligned_cols=204 Identities=13% Similarity=-0.025 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHcCCceEEEEEecCCCCChhh-HHH-HHHhhCCCCCCcEEEEEcCChHH----HHhhcccCCCCceeCCC
Q 048833 16 LDQLQKVLRYSLKGKRYLLVMDDVWNEDPEA-WCK-LKSLLLGGANGSKILVTTRSRKV----ASIMGTRGGTTGFNLQG 89 (629)
Q Consensus 16 ~~~~~~~l~~~L~~k~~LivlDdv~~~~~~~-~~~-~~~~~~~~~~gs~iivTTR~~~v----~~~~~~~~~~~~~~l~~ 89 (629)
..++...+.+.++.++.+|||||++.-.... .+. +...+... .+.+||+||+.... ......... ..+++++
T Consensus 119 ~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~-~~i~l~~ 196 (384)
T 2qby_B 119 LGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLG-PSVIFKP 196 (384)
T ss_dssp THHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCC-CEEEECC
T ss_pred HHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCC-CeEEECC
Confidence 4566677888888777799999995421111 122 22222222 67899999987532 112222212 3899999
Q ss_pred CChhhHHHHHHHhhcc--cCCCCChhHHHHHHHHHHhcC---CCch-HHHHHHhhh--c---CCCCHHHHHHHhhhhccc
Q 048833 90 LPFEDCLSLFMKCAFK--EERDKHPNLVKIGVEIVKKCG---GIPL-AVRTLGSLL--Y---DSTDEHFWEYVRDNEIWQ 158 (629)
Q Consensus 90 L~~~~a~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~~c~---glPL-al~~~g~~L--~---~~~~~~~w~~~~~~~~~~ 158 (629)
++.++..+++...+-. ......+ .....+++.|+ |.|. |+..+..+. . ..-+.+.+..+.+..
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~--- 270 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY--- 270 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH---
Confidence 9999999999987531 1112222 23456666666 8776 443333322 1 122344444433321
Q ss_pred cccccCCcchhhhcccccCChhhhhhhhhhccCCCC-ceeChHhHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCCc
Q 048833 159 LEQKESGILPALRLSYDQLPPRLKQCVAYCSIFPKD-FKFDSYDLVQFWMAHGLLQSHNKKEDLEDIGMRYLKELLSRSF 237 (629)
Q Consensus 159 ~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~fp~~-~~~~~~~l~~~wi~eg~i~~~~~~~~~~~~~~~~l~~L~~r~l 237 (629)
....+..++..|++..+..+..++. .+. -.+. ..+.......|. ..........++..|...++
T Consensus 271 -------~~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g~------~~~~~~~~~~~l~~L~~~gl 335 (384)
T 2qby_B 271 -------EQERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMYTDLCNKFKQ------KPLSYRRFSDIISELDMFGI 335 (384)
T ss_dssp -------HHHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTTC------CCCCHHHHHHHHHHHHHTTS
T ss_pred -------hcchHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHHHHHHHHcCC------CCCCHHHHHHHHHHHHhCCC
Confidence 1134556778899888888777766 111 0110 111111112221 11123557788999999999
Q ss_pred eeecc
Q 048833 238 FQDLT 242 (629)
Q Consensus 238 l~~~~ 242 (629)
+....
T Consensus 336 i~~~~ 340 (384)
T 2qby_B 336 VKIRI 340 (384)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98754
No 170
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.75 E-value=0.0072 Score=55.34 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=72.3
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHH-HHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKV-ASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v-~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++.+||+||++.-....+..+...+.....+.++|+||+..+. ....... ...+++++++.++..+++...+...+
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~~ 178 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR--CAVFRFKPVPKEAMKKRLLEICEKEG 178 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh--CceeecCCCCHHHHHHHHHHHHHHcC
Confidence 67899999999776656666676666655677889999887532 1122221 24799999999999999988774433
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHHHHhh
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRTLGSL 138 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~~g~~ 138 (629)
....+ .....+++.++|.|..+..+...
T Consensus 179 ~~~~~---~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 179 VKITE---DGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp CCBCH---HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHHHcCCCHHHHHHHHHH
Confidence 22222 34567888999999876554433
No 171
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.72 E-value=0.01 Score=58.20 Aligned_cols=192 Identities=14% Similarity=0.018 Sum_probs=103.9
Q ss_pred ceEEEEEecCCCCChhhHHHHHHhhCCCC------------------CCcEEEEEcCChHHH-HhhcccCCCCceeCCCC
Q 048833 30 KRYLLVMDDVWNEDPEAWCKLKSLLLGGA------------------NGSKILVTTRSRKVA-SIMGTRGGTTGFNLQGL 90 (629)
Q Consensus 30 k~~LivlDdv~~~~~~~~~~~~~~~~~~~------------------~gs~iivTTR~~~v~-~~~~~~~~~~~~~l~~L 90 (629)
+..+|+||++..........+...+.... .+.++|.||...... ..+..+ -...+++.++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R-~~~~i~l~~~ 168 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSR-FGIVEHLEYY 168 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTT-CSCEEECCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhc-ccEEEecCCC
Confidence 56789999997655445555544433211 235677776644211 111111 1257899999
Q ss_pred ChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHhhhcCC--------CCHHHHHHHhhhhccccccc
Q 048833 91 PFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLLYDS--------TDEHFWEYVRDNEIWQLEQK 162 (629)
Q Consensus 91 ~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L~~~--------~~~~~w~~~~~~~~~~~~~~ 162 (629)
+.+|..+++...+...+....+ .....+++++.|.|..+..+....... -+.+....+..
T Consensus 169 ~~~e~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~--------- 236 (324)
T 1hqc_A 169 TPEELAQGVMRDARLLGVRITE---EAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALA--------- 236 (324)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCH---HHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHH---------
T ss_pred CHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---------
Confidence 9999999988877543333222 456788899999998887765544311 11222221111
Q ss_pred cCCcchhhhcccccCChhhhhhhhhhccCCCCce-----------eChHhH----HHHHHHcCCcccCCCCccHHHHHHH
Q 048833 163 ESGILPALRLSYDQLPPRLKQCVAYCSIFPKDFK-----------FDSYDL----VQFWMAHGLLQSHNKKEDLEDIGMR 227 (629)
Q Consensus 163 ~~~~~~~l~~sy~~L~~~~k~~fl~~~~fp~~~~-----------~~~~~l----~~~wi~eg~i~~~~~~~~~~~~~~~ 227 (629)
.+..++..+++..+..+........+.. +++..+ -++.+..|++.....+..+.+.+..
T Consensus 237 ------~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~ 310 (324)
T 1hqc_A 237 ------ALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYR 310 (324)
T ss_dssp ------HHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred ------HhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHH
Confidence 1223455666666666655442222221 222222 2245567777655455566777888
Q ss_pred HHH-HHHhCCceee
Q 048833 228 YLK-ELLSRSFFQD 240 (629)
Q Consensus 228 ~l~-~L~~r~ll~~ 240 (629)
+++ ++.+|+++++
T Consensus 311 ~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 311 HLGYPPPVGPLLEP 324 (324)
T ss_dssp HTTCCCCC------
T ss_pred HHhcCCCCCCCCCC
Confidence 876 7777777763
No 172
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.42 E-value=0.041 Score=55.29 Aligned_cols=212 Identities=14% Similarity=0.055 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHcC--CceEEEEEecCCCCChhhHHHHHHhhCCCC----CCcEEEEEcCChHHHHhhc----ccCCCCce
Q 048833 16 LDQLQKVLRYSLK--GKRYLLVMDDVWNEDPEAWCKLKSLLLGGA----NGSKILVTTRSRKVASIMG----TRGGTTGF 85 (629)
Q Consensus 16 ~~~~~~~l~~~L~--~k~~LivlDdv~~~~~~~~~~~~~~~~~~~----~gs~iivTTR~~~v~~~~~----~~~~~~~~ 85 (629)
..++.+.+.+.+. +++.+||||+++.-+......+...+.... .+..||+||++.+...... .......+
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i 188 (389)
T 1fnn_A 109 RDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVI 188 (389)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceE
Confidence 3445555555543 568899999997766666666666554321 4678888888765433221 11111469
Q ss_pred eCCCCChhhHHHHHHHhhccc--CCCCChhHHHHHHHHHHhc---------CCCchHHHHHHhh-hc----CCCCHHHHH
Q 048833 86 NLQGLPFEDCLSLFMKCAFKE--ERDKHPNLVKIGVEIVKKC---------GGIPLAVRTLGSL-LY----DSTDEHFWE 149 (629)
Q Consensus 86 ~l~~L~~~~a~~Lf~~~a~~~--~~~~~~~~~~~~~~i~~~c---------~glPLal~~~g~~-L~----~~~~~~~w~ 149 (629)
.+++++.++..+++...+... ..... ......+++.+ .|.|..+..+... .. .....-.++
T Consensus 189 ~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~ 265 (389)
T 1fnn_A 189 RFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPE 265 (389)
T ss_dssp ECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred EeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 999999999999998775321 11112 24556778888 7877554433322 21 011111112
Q ss_pred HHhhhhccccccccCCcchhhhcccccCChhhhhhhhhhccCC---CCceeChHhHHHHHHH----cCCcccCCCCccHH
Q 048833 150 YVRDNEIWQLEQKESGILPALRLSYDQLPPRLKQCVAYCSIFP---KDFKFDSYDLVQFWMA----HGLLQSHNKKEDLE 222 (629)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~fp---~~~~~~~~~l~~~wi~----eg~i~~~~~~~~~~ 222 (629)
.+..... . .....+.-.+..|+++.+.++..++.+. .+..+....+...+.. .|..+ --.
T Consensus 266 ~v~~~~~----~---~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~ 332 (389)
T 1fnn_A 266 DVRKSSK----E---VLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP------RVH 332 (389)
T ss_dssp HHHHHHH----H---HSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC------CCH
T ss_pred HHHHHHH----H---HhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC------CCH
Confidence 2211100 0 0012233446778888888877777553 2214555555444332 22111 113
Q ss_pred HHHHHHHHHHHhCCceeeccc
Q 048833 223 DIGMRYLKELLSRSFFQDLTF 243 (629)
Q Consensus 223 ~~~~~~l~~L~~r~ll~~~~~ 243 (629)
.....++..|...+++.....
T Consensus 333 ~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 333 SQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHHHHhCCCeEEeee
Confidence 457788999999999987543
No 173
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.99 E-value=0.071 Score=53.37 Aligned_cols=58 Identities=10% Similarity=-0.018 Sum_probs=22.9
Q ss_pred cccCcccEEEecCcccccCcccCCCCCCCCeEeecCCCCcchhhhhCCCCCccceEec
Q 048833 404 KYLVNLRVLVLTTKQKSLQESGIRSLGSLRSLKIFGCRDLEHLFEEIDQLSVLRTLSI 461 (629)
Q Consensus 404 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 461 (629)
.++.+|+.+.+..+-.......+..+++|+.+.+.++....--...|..+.+|+.+.+
T Consensus 260 ~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 260 QNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 3444444444433322222233444445555444333211111223444445555444
No 174
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.029 Score=54.69 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=70.7
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.+++.+||+||++.-....+..+...+.....++++|+||+... +......+ ...+++++++.++..+++...+...
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~ 182 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ--CAILRYSKLSDEDVLKRLLQIIKLE 182 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh--ceEEeecCCCHHHHHHHHHHHHHHc
Confidence 45689999999977655566666666655556788899887753 21222221 2579999999999999998876433
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchH-HHHHH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLA-VRTLG 136 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLa-l~~~g 136 (629)
+....+ .....+++.|+|.|.. +..+.
T Consensus 183 ~~~~~~---~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 183 DVKYTN---DGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TCCBCH---HHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCH---HHHHHHHHHcCCCHHHHHHHHH
Confidence 322222 4456889999999954 44443
No 175
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.52 E-value=0.012 Score=52.16 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=48.9
Q ss_pred hhccCCCCceEEEEecC-CCCccchHHHHHhhhcCccccEEEcCCCCcc-----ccccccCCCCccceeecccCCCcc--
Q 048833 302 SLLSDLGRVRTICFSTD-DDEKTSQSFVESCISKSQFLRVLNLSESSIE-----VCSRKMGNLKHMRYLDLSRNSKIK-- 373 (629)
Q Consensus 302 ~~~~~~~~l~~L~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~-- 373 (629)
..+..-+.|+.|+++++ .++......+...+.....|+.|+|++|.+. .+-..+..-+.|+.|+|++|....
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 44455566777777653 5444444445555666666777777777664 122223344566666766653221
Q ss_pred --ccchhhccCCCccEeccCCc
Q 048833 374 --KLPKSICELQSLETLDLAGC 393 (629)
Q Consensus 374 --~lp~~~~~l~~L~~L~l~~~ 393 (629)
.+-..+..-+.|++|+|++|
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 12233334445666666543
No 176
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.19 E-value=0.15 Score=49.56 Aligned_cols=106 Identities=11% Similarity=0.014 Sum_probs=72.3
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++.+||+||++.-....+..+...+.....+.++|+||...+ +....... ...+++++++.++..+++...+...+
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr--~~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR--CAIFRFRPLRDEDIAKRLRYIAENEG 186 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT--EEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh--CcEEEecCCCHHHHHHHHHHHHHhcC
Confidence 5688999999977666667777777665567789999987653 11111111 14689999999999999987764433
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHHHHhhh
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRTLGSLL 139 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~~g~~L 139 (629)
....+ .....+++.++|.|..+..+....
T Consensus 187 ~~~~~---~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 187 LELTE---EGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp CEECH---HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHHHCCCCHHHHHHHHHHH
Confidence 22222 345678888999998765554433
No 177
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.70 E-value=0.3 Score=48.69 Aligned_cols=207 Identities=11% Similarity=0.045 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcC--CceEEEEEecCCCC----ChhhHHHHHHhhCC-CCCCcEEEEEcCChHHHHh----hcccCCCCc
Q 048833 16 LDQLQKVLRYSLK--GKRYLLVMDDVWNE----DPEAWCKLKSLLLG-GANGSKILVTTRSRKVASI----MGTRGGTTG 84 (629)
Q Consensus 16 ~~~~~~~l~~~L~--~k~~LivlDdv~~~----~~~~~~~~~~~~~~-~~~gs~iivTTR~~~v~~~----~~~~~~~~~ 84 (629)
..++.+.+.+.+. +++.+||||+++.- +...+..+...+.. ...+..+|+||++.+.... ....-....
T Consensus 112 ~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~ 191 (386)
T 2qby_A 112 IAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEE 191 (386)
T ss_dssp HHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEE
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCee
Confidence 4454555555554 45899999999541 12344444444422 2345677888887643221 111111247
Q ss_pred eeCCCCChhhHHHHHHHhhccc--CCCCChhHHHHHHHHHHhcC---CCchHHHH-HHhhhc-----C--CCCHHHHHHH
Q 048833 85 FNLQGLPFEDCLSLFMKCAFKE--ERDKHPNLVKIGVEIVKKCG---GIPLAVRT-LGSLLY-----D--STDEHFWEYV 151 (629)
Q Consensus 85 ~~l~~L~~~~a~~Lf~~~a~~~--~~~~~~~~~~~~~~i~~~c~---glPLal~~-~g~~L~-----~--~~~~~~w~~~ 151 (629)
+.+++++.++..+++...+... .....+ .....+++.++ |.|..+.. +..+.. + .-+.+.+..+
T Consensus 192 i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a 268 (386)
T 2qby_A 192 IIFPPYNAEELEDILTKRAQMAFKPGVLPD---NVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMA 268 (386)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHBCSSCSCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 9999999999999998764311 112222 34455666666 98884433 322221 1 1122333322
Q ss_pred hhhhccccccccCCcchhhhcccccCChhhhhhhhhhccCCC-C-ceeChHhHHHHHH----HcCCcccCCCCccHHHHH
Q 048833 152 RDNEIWQLEQKESGILPALRLSYDQLPPRLKQCVAYCSIFPK-D-FKFDSYDLVQFWM----AHGLLQSHNKKEDLEDIG 225 (629)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~fp~-~-~~~~~~~l~~~wi----~eg~i~~~~~~~~~~~~~ 225 (629)
.... ....+.-++..+++..+..+..++...+ + ..+....+.+.+. ..|. .. ......
T Consensus 269 ~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~-~~-----~~~~~~ 332 (386)
T 2qby_A 269 KEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV-EA-----VTQRRV 332 (386)
T ss_dssp HHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC-CC-----CCHHHH
T ss_pred HHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC-CC-----CCHHHH
Confidence 2211 1124556678888888888877774322 2 2233333322211 1121 11 112456
Q ss_pred HHHHHHHHhCCceeec
Q 048833 226 MRYLKELLSRSFFQDL 241 (629)
Q Consensus 226 ~~~l~~L~~r~ll~~~ 241 (629)
..++..|...+++...
T Consensus 333 ~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 333 SDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhCCCEEEE
Confidence 7789999999999764
No 178
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.20 E-value=0.13 Score=42.32 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=24.1
Q ss_pred EEEcCCCCcc--ccccccCCCCccceeecccCCCccccch-hhccCCCccEeccCCc
Q 048833 340 VLNLSESSIE--VCSRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLETLDLAGC 393 (629)
Q Consensus 340 ~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~ 393 (629)
+++-++..++ .+|..+. .+|++|+|++| .+..+|. .|..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 4444555554 5554332 34555555554 3444433 2344555555555544
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.05 E-value=0.39 Score=47.69 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=71.1
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhccc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKE 106 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 106 (629)
.+++.+||+||++.-+...+..+...+.....+..+|++|...+ +....... ...+++.+++.++..+++...+-..
T Consensus 117 ~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr--~~~i~~~~l~~~~~~~~l~~~~~~~ 194 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR--CLQFHLKALDVEQIRHQLEHILNEE 194 (373)
T ss_dssp SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhh--eeEeeCCCCCHHHHHHHHHHHHHHc
Confidence 35678999999977666677777777766556778888876543 21222221 2679999999999999988765332
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchHHHHHH
Q 048833 107 ERDKHPNLVKIGVEIVKKCGGIPLAVRTLG 136 (629)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~c~glPLal~~~g 136 (629)
+....+ .....+++.++|.|..+..+.
T Consensus 195 ~~~~~~---~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 195 HIAHEP---RALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TCCBCH---HHHHHHHHHSSSCHHHHHHHH
T ss_pred CCCCCH---HHHHHHHHHCCCCHHHHHHHH
Confidence 322222 345678899999998776554
No 180
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.94 E-value=0.12 Score=45.72 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=80.6
Q ss_pred CcceEEEEEcc-cCCcc---hhhhhccCCCCceEEEEecCCCCccchHHHHHhhhcCccccEEEcCCCCcc-----cccc
Q 048833 283 KSVRHLSFAAA-NASRN---DFSSLLSDLGRVRTICFSTDDDEKTSQSFVESCISKSQFLRVLNLSESSIE-----VCSR 353 (629)
Q Consensus 283 ~~~~~l~~~~~-~~~~~---~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~ 353 (629)
..+..+.+... .+... .+...+..-..|+.|.+++|.++......+...+...+.|+.|+|+.|.|. .+-.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 35667777653 44332 345677788999999999999888777777888888899999999999986 3444
Q ss_pred ccCCCCccceeecccCCC--cc-----ccchhhccCCCccEeccCCc
Q 048833 354 KMGNLKHMRYLDLSRNSK--IK-----KLPKSICELQSLETLDLAGC 393 (629)
Q Consensus 354 ~~~~l~~L~~L~l~~~~~--~~-----~lp~~~~~l~~L~~L~l~~~ 393 (629)
.+..-..|+.|+|++|.. +. .+...+..-+.|..|+++.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 566667899999986422 22 24445566678888888765
No 181
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.25 E-value=0.73 Score=44.42 Aligned_cols=103 Identities=11% Similarity=0.064 Sum_probs=69.6
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++.++|+|+++.-.......+...+.....+.++|+||.... +....... ...+++.+++.++..+.+...+-..+
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~~ 178 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR--CAVFRFKPVPKEAMKKRLLEICEKEG 178 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT--CEEEECCCCCHHHHHHHHHHHHHTTC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh--CeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5688999999976555566666666666567788888887653 22222221 25799999999999999887764433
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRTLG 136 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~~g 136 (629)
....+ .....+++.++|.+..+..+-
T Consensus 179 ~~i~~---~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 179 VKITE---DGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CCBCH---HHHHHHHHTTTTCHHHHHHHH
T ss_pred CCCCH---HHHHHHHHHcCCCHHHHHHHH
Confidence 32222 345677888999887654433
No 182
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.54 E-value=0.56 Score=42.98 Aligned_cols=101 Identities=13% Similarity=0.051 Sum_probs=59.4
Q ss_pred ceEEEEEecCCCCChhh--HHHHHHhhCCC-CCC-cEEEEEcCC---------hHHHHhhcccCCCCceeCCCCChhhHH
Q 048833 30 KRYLLVMDDVWNEDPEA--WCKLKSLLLGG-ANG-SKILVTTRS---------RKVASIMGTRGGTTGFNLQGLPFEDCL 96 (629)
Q Consensus 30 k~~LivlDdv~~~~~~~--~~~~~~~~~~~-~~g-s~iivTTR~---------~~v~~~~~~~~~~~~~~l~~L~~~~a~ 96 (629)
++.+||+||++...... ...+...+... ..+ .+||+||+. ..+..++.. ...+++++++.++..
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~---~~~i~l~~~~~~~~~ 180 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHW---GLTYQLQPMMDDEKL 180 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHH---SEEEECCCCCGGGHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhc---CceEEeCCCCHHHHH
Confidence 45789999996532222 22233322210 122 257887763 233333322 157999999999999
Q ss_pred HHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHH
Q 048833 97 SLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLG 136 (629)
Q Consensus 97 ~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g 136 (629)
+++...+...+....+ +....+++.++|.+..+..+-
T Consensus 181 ~~l~~~~~~~~~~~~~---~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 181 AALQRRAAMRGLQLPE---DVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHTTCCCCH---HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCH---HHHHHHHHHccCCHHHHHHHH
Confidence 9998876433332222 445678888999877665443
No 183
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=89.05 E-value=2 Score=41.80 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=67.8
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-++|+|+++.......+.+...+.....+..+|++|.+.+ +.....++ ...+++++++.++..+.+.... .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR--c~~~~~~~~~~~~~~~~L~~~~---~ 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR--CRLHYLAPPPEQYAVTWLSREV---T 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHC---C
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc--ceeeeCCCCCHHHHHHHHHHhc---C
Confidence 5678899999977666667777777766566778888877653 33333332 3679999999999999887765 1
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRTL 135 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~~ 135 (629)
..+ +.+..+++.++|.|..+..+
T Consensus 182 --~~~---~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 182 --MSQ---DALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp --CCH---HHHHHHHHHTTTCHHHHHHT
T ss_pred --CCH---HHHHHHHHHcCCCHHHHHHH
Confidence 111 33467888999999765443
No 184
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.72 E-value=1.3 Score=43.46 Aligned_cols=103 Identities=7% Similarity=0.038 Sum_probs=67.9
Q ss_pred ceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccCC
Q 048833 30 KRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEER 108 (629)
Q Consensus 30 k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 108 (629)
++-++|+|++..-+......+...+.....+.++|++|.+.+ +......+ ...+++++++.++..+.+...+-..+.
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR--~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQ--CLLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhh--ceEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 556999999977666666667666654455778888887642 22222222 267999999999999998877643332
Q ss_pred CCC-hhHHHHHHHHHHhcCCCchHHHHHHh
Q 048833 109 DKH-PNLVKIGVEIVKKCGGIPLAVRTLGS 137 (629)
Q Consensus 109 ~~~-~~~~~~~~~i~~~c~glPLal~~~g~ 137 (629)
... + +....+++.++|.+..+..+..
T Consensus 212 ~~~~~---~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 212 QLETK---DILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EECCS---HHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCcH---HHHHHHHHHcCCCHHHHHHHHH
Confidence 212 2 3456788889998776554443
No 185
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.01 E-value=0.65 Score=38.03 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=15.1
Q ss_pred CcCeeecccCccCccCCcC-CCCCCCcCeEeeeCCC
Q 048833 564 ALETLVIARCPKLSSLPEG-MHHVTTLKLLTIGGCP 598 (629)
Q Consensus 564 ~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~ 598 (629)
+|+.|+|++| .++.+|.. +..+++|+.|++++||
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 3445555442 34444322 2344445555555444
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=86.24 E-value=2.7 Score=42.60 Aligned_cols=103 Identities=15% Similarity=0.028 Sum_probs=62.5
Q ss_pred HHcCCceEEEEEecCCCCCh--hhHHHHHHhhCC-CCCCcEEEEEcCC---------hHHHHhhcccCCCCceeCCCCCh
Q 048833 25 YSLKGKRYLLVMDDVWNEDP--EAWCKLKSLLLG-GANGSKILVTTRS---------RKVASIMGTRGGTTGFNLQGLPF 92 (629)
Q Consensus 25 ~~L~~k~~LivlDdv~~~~~--~~~~~~~~~~~~-~~~gs~iivTTR~---------~~v~~~~~~~~~~~~~~l~~L~~ 92 (629)
+.++.+.-+|++||++.-.. ..-+.+...+.. ...|..||+||.. ..+..++.. ..++.+++++.
T Consensus 189 ~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~---g~~i~l~~p~~ 265 (440)
T 2z4s_A 189 EKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM---GLVAKLEPPDE 265 (440)
T ss_dssp HHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHS---SBCCBCCCCCH
T ss_pred HHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccC---CeEEEeCCCCH
Confidence 33443677999999954221 122233333321 2357789998876 234444432 15789999999
Q ss_pred hhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHH
Q 048833 93 EDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVR 133 (629)
Q Consensus 93 ~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 133 (629)
++-.+++.+.+-..+...+++ ....+++.+.|.+..+.
T Consensus 266 e~r~~iL~~~~~~~~~~i~~e---~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 266 ETRKSIARKMLEIEHGELPEE---VLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHHHHHHHHTCCCCTT---HHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHH---HHHHHHHhcCCCHHHHH
Confidence 999999988774333322232 34567788888876554
No 187
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.53 E-value=6.8 Score=38.09 Aligned_cols=103 Identities=10% Similarity=0.068 Sum_probs=66.9
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+++-+|++|++..-.......+...+.......++|++|.... +......+ ...+++++++.++..+.+...+-..+
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR--~~~i~~~~~~~~~~~~~l~~~~~~~~ 209 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ--CSKFRFKALDASNAIDRLRFISEQEN 209 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH--SEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc--CceEEeCCCCHHHHHHHHHHHHHHhC
Confidence 3556999999966555555666666655455677888775542 22222222 14689999999999998887764333
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHHHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVRTLG 136 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~~~g 136 (629)
....+ .....+++.++|.|..+..+.
T Consensus 210 ~~i~~---~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 210 VKCDD---GVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCCCH---HHHHHHHHHTSSCHHHHHHHH
T ss_pred CCCCH---HHHHHHHHHcCCCHHHHHHHH
Confidence 32222 456788899999988755443
No 188
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=81.75 E-value=11 Score=36.51 Aligned_cols=116 Identities=12% Similarity=-0.017 Sum_probs=75.9
Q ss_pred CcHHHHHHHHHH-HcCCceEEEEEecCCC-CChhhHHHHHHhhCCCCCCcEEEEEcCC-------hHHHHhhcccCCCCc
Q 048833 14 SNLDQLQKVLRY-SLKGKRYLLVMDDVWN-EDPEAWCKLKSLLLGGANGSKILVTTRS-------RKVASIMGTRGGTTG 84 (629)
Q Consensus 14 ~~~~~~~~~l~~-~L~~k~~LivlDdv~~-~~~~~~~~~~~~~~~~~~gs~iivTTR~-------~~v~~~~~~~~~~~~ 84 (629)
.++.++.+.+.. -+-+++-++|+|++.. -....++.+...+....+++.+|++|.. +.+....... ..+
T Consensus 59 ~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr--~~~ 136 (343)
T 1jr3_D 59 TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANR--SVQ 136 (343)
T ss_dssp CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTT--CEE
T ss_pred CCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhC--ceE
Confidence 456666655543 2446667788899865 4556788888888766678888877643 2354444432 367
Q ss_pred eeCCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHH
Q 048833 85 FNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRT 134 (629)
Q Consensus 85 ~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 134 (629)
++..+++.++..+.....+-..+....+ +.+..+++.++|-..++..
T Consensus 137 ~~~~~l~~~~l~~~l~~~~~~~g~~i~~---~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 137 VTCQTPEQAQLPRWVAARAKQLNLELDD---AANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp EEECCCCTTHHHHHHHHHHHHTTCEECH---HHHHHHHHSSTTCHHHHHH
T ss_pred EEeeCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhchHHHHHHH
Confidence 8999999998887776665333322222 4466788888987776654
No 189
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.76 E-value=19 Score=34.58 Aligned_cols=105 Identities=16% Similarity=0.119 Sum_probs=62.9
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCC------------------CCcEEEEEcCChHHH-HhhcccCCCCceeCCC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGA------------------NGSKILVTTRSRKVA-SIMGTRGGTTGFNLQG 89 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~------------------~gs~iivTTR~~~v~-~~~~~~~~~~~~~l~~ 89 (629)
.+..+|+||++..........+...+.... ++-++|.+|...... ..+..+ -...+.+++
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R-~~~~i~l~~ 183 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDR-FGMQFRLEF 183 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTT-CSEEEECCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhh-cCEEeeCCC
Confidence 456789999997665555555555444321 124566666653221 111111 125799999
Q ss_pred CChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchHHHHHHh
Q 048833 90 LPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVRTLGS 137 (629)
Q Consensus 90 L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~ 137 (629)
++.++..+++...+-..+.... ......+++.+.|.|-.+..+..
T Consensus 184 ~~~~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 184 YKDSELALILQKAALKLNKTCE---EKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999877643322212 24456778889999866654443
No 190
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=78.98 E-value=12 Score=34.72 Aligned_cols=101 Identities=19% Similarity=0.157 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCceEEEEEecCCCC----------ChhhHHHHHHhhCC---CCCCcEEEEEcCChHHHHhhcccCC-CCc
Q 048833 19 LQKVLRYSLKGKRYLLVMDDVWNE----------DPEAWCKLKSLLLG---GANGSKILVTTRSRKVASIMGTRGG-TTG 84 (629)
Q Consensus 19 ~~~~l~~~L~~k~~LivlDdv~~~----------~~~~~~~~~~~~~~---~~~gs~iivTTR~~~v~~~~~~~~~-~~~ 84 (629)
+...+......+..+|+||+++.- +......+...+.. .+.+..||.||...+....+..... ...
T Consensus 113 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~ 192 (272)
T 1d2n_A 113 MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTT 192 (272)
T ss_dssp HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEE
T ss_pred HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceE
Confidence 334444444567899999998431 11122333333332 2334557778887766554221111 256
Q ss_pred eeCCCCCh-hhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCC
Q 048833 85 FNLQGLPF-EDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGG 127 (629)
Q Consensus 85 ~~l~~L~~-~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g 127 (629)
+.+++++. ++..+++.... . .. ......+++.+.|
T Consensus 193 i~~p~l~~r~~i~~i~~~~~---~--~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 193 IHVPNIATGEQLLEALELLG---N--FK---DKERTTIAQQVKG 228 (272)
T ss_dssp EECCCEEEHHHHHHHHHHHT---C--SC---HHHHHHHHHHHTT
T ss_pred EcCCCccHHHHHHHHHHhcC---C--CC---HHHHHHHHHHhcC
Confidence 88999988 66666655432 1 11 2334567777777
No 191
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=72.48 E-value=38 Score=32.25 Aligned_cols=135 Identities=12% Similarity=0.101 Sum_probs=71.1
Q ss_pred hhhhhhhCCCC---CcHHHHHHHHHHH--cCCceEEEEEecCCCC-ChhhHHHHHHhhCCCCCCc--EEEEEcCChHH--
Q 048833 3 KIINFVTGENQ---SNLDQLQKVLRYS--LKGKRYLLVMDDVWNE-DPEAWCKLKSLLLGGANGS--KILVTTRSRKV-- 72 (629)
Q Consensus 3 ~i~~~~~~~~~---~~~~~~~~~l~~~--L~~k~~LivlDdv~~~-~~~~~~~~~~~~~~~~~gs--~iivTTR~~~v-- 72 (629)
+|.+.+.|... ...+.+.+.+.+. -++++++|+||.++.- ++...-.+... +. ..+| .||.++.+.+.
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~-~~-~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKW-IS-SKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHH-HH-CSSCCEEEEEECCSSCCCH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhc-cc-ccCCcEEEEEEecCcccch
Confidence 44555555432 1223343333332 2467899999999653 22222222221 11 1233 34444544321
Q ss_pred --H-HhhcccCCCCceeCCCCChhhHHHHHHHhhcccCC------------------------------------CCChh
Q 048833 73 --A-SIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEER------------------------------------DKHPN 113 (629)
Q Consensus 73 --~-~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~------------------------------------~~~~~ 113 (629)
. ....++-....+.+++.+.+|-.+++...+-.... -.+..
T Consensus 178 ~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a 257 (318)
T 3te6_A 178 EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKI 257 (318)
T ss_dssp HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHH
T ss_pred hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHH
Confidence 1 11111111146899999999999988776532110 02234
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHhhh
Q 048833 114 LVKIGVEIVKKCGGIPLAVRTLGSLL 139 (629)
Q Consensus 114 ~~~~~~~i~~~c~glPLal~~~g~~L 139 (629)
++-+|++++.-.|-.-.|+.++-.+.
T Consensus 258 i~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 258 TQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 66677777777888888887765554
No 192
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.21 E-value=7.8 Score=40.20 Aligned_cols=101 Identities=17% Similarity=0.259 Sum_probs=60.1
Q ss_pred CceEEEEEecCCCC---ChhhHHHHHHhhCCCCCCcEEEEEcCChHH--HHhhcccCCCCceeCCCCChhhHHHHHHHhh
Q 048833 29 GKRYLLVMDDVWNE---DPEAWCKLKSLLLGGANGSKILVTTRSRKV--ASIMGTRGGTTGFNLQGLPFEDCLSLFMKCA 103 (629)
Q Consensus 29 ~k~~LivlDdv~~~---~~~~~~~~~~~~~~~~~gs~iivTTR~~~v--~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 103 (629)
+++.+||+|+++.- ++..+..+...+.. .+..||+++.+... ..... .....+++++++.++..+.+...+
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~--~r~~~i~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFD--RVCLDIQFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGT--TTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhH--hceEEEEeCCCCHHHHHHHHHHHH
Confidence 57889999999642 22334444444432 34457776655321 11111 123568999999999999988777
Q ss_pred cccCCCCChhHHHHHHHHHHhcCC-CchHHHHHH
Q 048833 104 FKEERDKHPNLVKIGVEIVKKCGG-IPLAVRTLG 136 (629)
Q Consensus 104 ~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~g 136 (629)
...+....++ ....+++.++| ++-|+..+.
T Consensus 223 ~~~~~~i~~~---~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 223 IREKFKLDPN---VIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HHHTCCCCTT---HHHHHHHHTTTCHHHHHHHHT
T ss_pred HHcCCCCCHH---HHHHHHHHcCCcHHHHHHHHH
Confidence 5443333332 34578888988 445555443
No 193
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=71.69 E-value=6.8 Score=36.74 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=56.0
Q ss_pred HHHHHcCCceEEEEEecCCCC-----------Ch---hhHHHHHHhhC--CCCCCcEEEEEcCChHHHHhhccc--CCCC
Q 048833 22 VLRYSLKGKRYLLVMDDVWNE-----------DP---EAWCKLKSLLL--GGANGSKILVTTRSRKVASIMGTR--GGTT 83 (629)
Q Consensus 22 ~l~~~L~~k~~LivlDdv~~~-----------~~---~~~~~~~~~~~--~~~~gs~iivTTR~~~v~~~~~~~--~~~~ 83 (629)
.+......+..+|+||+++.- +. .....+...+. ....+..||.||...+.....-.. .-..
T Consensus 102 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~ 181 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDR 181 (285)
T ss_dssp HHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEE
T ss_pred HHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCe
Confidence 333334456689999999431 11 11222222222 223467788888765332211000 1114
Q ss_pred ceeCCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCC
Q 048833 84 GFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGI 128 (629)
Q Consensus 84 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 128 (629)
.+.++..+.++..+++...+.........++ ..++..+.|.
T Consensus 182 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~----~~l~~~~~g~ 222 (285)
T 3h4m_A 182 IIEVPAPDEKGRLEILKIHTRKMNLAEDVNL----EEIAKMTEGC 222 (285)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHHCTTC
T ss_pred EEEECCCCHHHHHHHHHHHHhcCCCCCcCCH----HHHHHHcCCC
Confidence 6899999999999999888754433222233 3556666663
No 194
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=71.63 E-value=14 Score=35.28 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=57.0
Q ss_pred CceEEEEEecCCCCC-hhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHH-------
Q 048833 29 GKRYLLVMDDVWNED-PEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLF------- 99 (629)
Q Consensus 29 ~k~~LivlDdv~~~~-~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf------- 99 (629)
+++-+||+|+++.-. .+....+...+.....+.++|+||.... +......+ ...+++++++.++-.+++
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR--~~~i~~~~~~~~e~~~il~~~~~~l 181 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR--CRVITFGQPTDEDKIEMMKQMIRRL 181 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH--SEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh--CcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 378899999996544 4455555555544345678888887653 11111111 146899999988743332
Q ss_pred HHhhcccCCCCChhHHHHHHHHHHhcCCCchHHH
Q 048833 100 MKCAFKEERDKHPNLVKIGVEIVKKCGGIPLAVR 133 (629)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 133 (629)
...+...+....+ .+....+++.++|-+..+.
T Consensus 182 ~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 182 TEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred HHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 2222211222111 2445677888888665433
No 195
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=70.42 E-value=30 Score=31.53 Aligned_cols=107 Identities=7% Similarity=0.023 Sum_probs=57.3
Q ss_pred HHHHHcCCceEEEEEecCCCC------------C---hhhHHHHHHhhCC--CCCCcEEEEEcCChHHHHh-hccc-CCC
Q 048833 22 VLRYSLKGKRYLLVMDDVWNE------------D---PEAWCKLKSLLLG--GANGSKILVTTRSRKVASI-MGTR-GGT 82 (629)
Q Consensus 22 ~l~~~L~~k~~LivlDdv~~~------------~---~~~~~~~~~~~~~--~~~gs~iivTTR~~~v~~~-~~~~-~~~ 82 (629)
.+.........+|++|+++.- + +.....+...+.. ...+..||.||........ .... .-.
T Consensus 90 ~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~ 169 (262)
T 2qz4_A 90 LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLD 169 (262)
T ss_dssp HHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCC
T ss_pred HHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCC
Confidence 333333455789999999642 0 1112233333332 2345567777766543221 1110 112
Q ss_pred CceeCCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCch
Q 048833 83 TGFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPL 130 (629)
Q Consensus 83 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 130 (629)
..+.++..+.++-.+++...+........ .......+++.+.|.+-
T Consensus 170 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 170 RHVFIDLPTLQERREIFEQHLKSLKLTQS--STFYSQRLAELTPGFSG 215 (262)
T ss_dssp EEEECCSCCHHHHHHHHHHHHHHTTCCBT--HHHHHHHHHHTCTTCCH
T ss_pred eEEEeCCcCHHHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHCCCCCH
Confidence 56789999999999999887643332222 22234678888888754
No 196
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=63.32 E-value=18 Score=34.25 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=48.2
Q ss_pred eEEEEEecCCCC---------ChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHh------hcccCCCCceeCCCCChhhH
Q 048833 31 RYLLVMDDVWNE---------DPEAWCKLKSLLLGGANGSKILVTTRSRKVASI------MGTRGGTTGFNLQGLPFEDC 95 (629)
Q Consensus 31 ~~LivlDdv~~~---------~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~------~~~~~~~~~~~l~~L~~~~a 95 (629)
.-+|++|+++.- .......+...+.....+.+||+||........ +..+ -...+.+++++.++-
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R-~~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR-IAHHIEFPDYSDEEL 209 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH-EEEEEEECCCCHHHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh-CCeEEEcCCcCHHHH
Confidence 458999999632 444555666666655667788888865432111 1111 015789999999999
Q ss_pred HHHHHHhhcc
Q 048833 96 LSLFMKCAFK 105 (629)
Q Consensus 96 ~~Lf~~~a~~ 105 (629)
.+++...+-.
T Consensus 210 ~~il~~~l~~ 219 (309)
T 3syl_A 210 FEIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999877743
No 197
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=62.10 E-value=20 Score=34.28 Aligned_cols=93 Identities=8% Similarity=-0.024 Sum_probs=53.9
Q ss_pred eEEEEEecCCCCCh--hhHHHHHHhhCC-CCCCcEEEEEcCC---------hHHHHhhcccCCCCceeCCCCChhhHHHH
Q 048833 31 RYLLVMDDVWNEDP--EAWCKLKSLLLG-GANGSKILVTTRS---------RKVASIMGTRGGTTGFNLQGLPFEDCLSL 98 (629)
Q Consensus 31 ~~LivlDdv~~~~~--~~~~~~~~~~~~-~~~gs~iivTTR~---------~~v~~~~~~~~~~~~~~l~~L~~~~a~~L 98 (629)
.-+|++||+..-.. .....+...+.. ...|.+||+||.. ..+..++.. ..++++++ +.++-.++
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~---~~~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEG---GILVEIEL-DNKTRFKI 174 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHT---SEEEECCC-CHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccC---ceEEEeCC-CHHHHHHH
Confidence 67899999954221 112233333221 1346678888753 233334322 15689999 99999999
Q ss_pred HHHhhcccCCCCChhHHHHHHHHHHhcCCCchH
Q 048833 99 FMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLA 131 (629)
Q Consensus 99 f~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 131 (629)
+...+...+...++ +....+++++ |..-.
T Consensus 175 l~~~~~~~~~~l~~---~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 175 IKEKLKEFNLELRK---EVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHTTCCCCH---HHHHHHHHHC-SSHHH
T ss_pred HHHHHHhcCCCCCH---HHHHHHHHhC-CCHHH
Confidence 98887543333332 3445677777 65543
No 198
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=61.25 E-value=25 Score=34.19 Aligned_cols=93 Identities=11% Similarity=0.007 Sum_probs=57.7
Q ss_pred eEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC-----------------hHHHHhhcccCCCCceeCCCCChh
Q 048833 31 RYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS-----------------RKVASIMGTRGGTTGFNLQGLPFE 93 (629)
Q Consensus 31 ~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~-----------------~~v~~~~~~~~~~~~~~l~~L~~~ 93 (629)
+.+|++|++..-..+....+...+..... ..++++|.. ..+..++ ..+.+++++.+
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~------~~i~~~~~~~~ 262 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRL------LIVSTTPYSEK 262 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTE------EEEEECCCCHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHHHhhc------cEEEecCCCHH
Confidence 35999999977666666666666654333 334444431 2333332 44899999999
Q ss_pred hHHHHHHHhhcccCCCCChhHHHHHHHHHHhcC-CCchHHH
Q 048833 94 DCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCG-GIPLAVR 133 (629)
Q Consensus 94 ~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~-glPLal~ 133 (629)
+..+++...+-..+....+ .....+++.+. |.|..+.
T Consensus 263 e~~~il~~~~~~~~~~~~~---~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 263 DTKQILRIRCEEEDVEMSE---DAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHHHHHHHTTCCBCH---HHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcCCCHHHHH
Confidence 9999998776443332222 34567778886 7665543
No 199
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.00 E-value=42 Score=32.20 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=61.8
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChH-HHHhhcccCCCCceeCCCCChhhHHHHHHHhhcccC
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRK-VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEE 107 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 107 (629)
+.+-++|+|++..-.....+.+...+.......++|++|.... +......+ ...+++.+++.++..+.+...+-..+
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR--~~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ--CTRFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh--ceeEeccCCCHHHHHHHHHHHHHHcC
Confidence 3467899999966555556666665554455677887776542 22222221 24688999999998887776553222
Q ss_pred CCCChhHHHHHHHHHHhcCCCchHHH
Q 048833 108 RDKHPNLVKIGVEIVKKCGGIPLAVR 133 (629)
Q Consensus 108 ~~~~~~~~~~~~~i~~~c~glPLal~ 133 (629)
....+ .....+++.++|-+-.+.
T Consensus 187 ~~i~~---~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 187 LKLSP---NAEKALIELSNGDMRRVL 209 (340)
T ss_dssp CCBCH---HHHHHHHHHHTTCHHHHH
T ss_pred CCCCH---HHHHHHHHHcCCCHHHHH
Confidence 22222 345678888888776443
No 200
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=53.40 E-value=77 Score=30.64 Aligned_cols=103 Identities=10% Similarity=-0.049 Sum_probs=54.1
Q ss_pred CCceEEEEEecCCCCCh-------h----hHHHHHHhhC---CCCCCcEEEEEcCChHHHH-hhcccCCCCceeCCCCCh
Q 048833 28 KGKRYLLVMDDVWNEDP-------E----AWCKLKSLLL---GGANGSKILVTTRSRKVAS-IMGTRGGTTGFNLQGLPF 92 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~-------~----~~~~~~~~~~---~~~~gs~iivTTR~~~v~~-~~~~~~~~~~~~l~~L~~ 92 (629)
..+..+|+||+++.-.. . ....+...+. ....+-.||.||...+... .+.. .-...+.++..+.
T Consensus 141 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~ 219 (355)
T 2qp9_X 141 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDL 219 (355)
T ss_dssp HTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH-TCCEEEECCCCCH
T ss_pred HcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc-ccCEEEEeCCcCH
Confidence 35778999999954210 0 0122222222 1234556666776542111 1111 1125678899999
Q ss_pred hhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCC-chHHHH
Q 048833 93 EDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGI-PLAVRT 134 (629)
Q Consensus 93 ~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~ 134 (629)
++-.+++..+......... ......+++.+.|. +-.|..
T Consensus 220 ~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 220 AARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp HHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHH
Confidence 9999999887743322111 12345677888884 434433
No 201
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=51.17 E-value=44 Score=33.71 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=56.7
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEE-EcCChH--HHHhhcccCCCCceeCCCCChhhHHHHHHHhhc
Q 048833 28 KGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILV-TTRSRK--VASIMGTRGGTTGFNLQGLPFEDCLSLFMKCAF 104 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iiv-TTR~~~--v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~ 104 (629)
.+++.+|++|+++.-.....+.+...+.. + .-.+|. ||.+.. +......+ ..++.+++++.++..+++.+..-
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR--~~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSR--ARVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTT--EEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCc--eeEEeeCCcCHHHHHHHHHHHHH
Confidence 46789999999976544444445555543 2 233333 554432 11112221 25789999999999999887764
Q ss_pred ccCC----CCChhHHHHHHHHHHhcCCCchHHHHH
Q 048833 105 KEER----DKHPNLVKIGVEIVKKCGGIPLAVRTL 135 (629)
Q Consensus 105 ~~~~----~~~~~~~~~~~~i~~~c~glPLal~~~ 135 (629)
.... ....--.+....+++.++|.+..+..+
T Consensus 180 ~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 180 DKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp CTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 3110 000111234567778888877655443
No 202
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=50.91 E-value=75 Score=30.13 Aligned_cols=103 Identities=10% Similarity=-0.043 Sum_probs=56.3
Q ss_pred CCceEEEEEecCCCCCh-----------hhHHHHHHhhC---CCCCCcEEEEEcCChHHHH-hhcccCCCCceeCCCCCh
Q 048833 28 KGKRYLLVMDDVWNEDP-----------EAWCKLKSLLL---GGANGSKILVTTRSRKVAS-IMGTRGGTTGFNLQGLPF 92 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~~-----------~~~~~~~~~~~---~~~~gs~iivTTR~~~v~~-~~~~~~~~~~~~l~~L~~ 92 (629)
..+..+|+||++..-.. .....+...+. ....+..||.||...+... .+..+ -...+.++..+.
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~R-f~~~i~~~~p~~ 186 (322)
T 3eie_A 108 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR-FERRIYIPLPDL 186 (322)
T ss_dssp HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHH-CCEEEECCCCCH
T ss_pred hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcc-cCeEEEeCCCCH
Confidence 34668999999953110 11222333332 2344566776777643221 11111 125678888999
Q ss_pred hhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCC-chHHHH
Q 048833 93 EDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGI-PLAVRT 134 (629)
Q Consensus 93 ~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~ 134 (629)
++-.+++..++........+ .....+++.+.|. +-.|..
T Consensus 187 ~~r~~il~~~~~~~~~~~~~---~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 187 AARTTMFEINVGDTPCVLTK---EDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp HHHHHHHHHHHTTCCCCCCH---HHHHHHHHTTTTCCHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCH---HHHHHHHHHcCCCCHHHHHH
Confidence 99999999887543222111 2345777888874 434433
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=48.17 E-value=19 Score=34.25 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=53.1
Q ss_pred CceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCCh-HHHHhhcccCCCCceeCCCCChhhHHHHHHHhh
Q 048833 29 GKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSR-KVASIMGTRGGTTGFNLQGLPFEDCLSLFMKCA 103 (629)
Q Consensus 29 ~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 103 (629)
+++-++|+|+++.-.....+.+...+....+.+++|++|.+. .+.....++ .+++++++.++..+.+....
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR----~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR----VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT----SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce----eEeCCCCCHHHHHHHHHHHh
Confidence 456788999997766677788888777666778888887654 343334332 79999999999998887765
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=44.55 E-value=2e+02 Score=28.75 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=52.8
Q ss_pred CceEEEEEecCCCC-------ChhhHH----HHHHhhCC---CCCCcEEEEEcCChHHHHh-hcccCCCCceeCCCCChh
Q 048833 29 GKRYLLVMDDVWNE-------DPEAWC----KLKSLLLG---GANGSKILVTTRSRKVASI-MGTRGGTTGFNLQGLPFE 93 (629)
Q Consensus 29 ~k~~LivlDdv~~~-------~~~~~~----~~~~~~~~---~~~gs~iivTTR~~~v~~~-~~~~~~~~~~~l~~L~~~ 93 (629)
.++.+|++|+++.- +..... .+...+.+ ...+-.||.||...+.... +.. .-...+.++..+.+
T Consensus 226 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~ 304 (444)
T 2zan_A 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEAH 304 (444)
T ss_dssp SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT-TCCEEEECCCCCHH
T ss_pred cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh-hcceEEEeCCcCHH
Confidence 56789999999642 011112 22222322 2345667777765432211 111 11246788888899
Q ss_pred hHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCc
Q 048833 94 DCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIP 129 (629)
Q Consensus 94 ~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 129 (629)
+-.++|..+......... ......+++.+.|..
T Consensus 305 ~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~s 337 (444)
T 2zan_A 305 ARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYS 337 (444)
T ss_dssp HHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCC
Confidence 889999887643322111 123456778888843
No 205
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=44.18 E-value=83 Score=30.40 Aligned_cols=104 Identities=10% Similarity=0.007 Sum_probs=55.1
Q ss_pred CceEEEEEecCCCC--------C---hhhHHHHHHhhCC----CCCCcEEEEEcCChHHH-HhhcccCCCCceeCCCCCh
Q 048833 29 GKRYLLVMDDVWNE--------D---PEAWCKLKSLLLG----GANGSKILVTTRSRKVA-SIMGTRGGTTGFNLQGLPF 92 (629)
Q Consensus 29 ~k~~LivlDdv~~~--------~---~~~~~~~~~~~~~----~~~gs~iivTTR~~~v~-~~~~~~~~~~~~~l~~L~~ 92 (629)
.++.+|+||+++.- + ......+...+.+ ...+-.||.||...+.. .....+ -...+.++..+.
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R-f~~~i~i~~p~~ 253 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRR-LVKRLYIPLPEA 253 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTT-CCEEEECCCCCH
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhh-CceEEEeCCcCH
Confidence 56789999999321 0 0112223333322 12344566677654221 111111 124678889999
Q ss_pred hhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCC-chHHHHHH
Q 048833 93 EDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGI-PLAVRTLG 136 (629)
Q Consensus 93 ~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~g 136 (629)
++..+++...+-....... ......+++.+.|. +-++..+.
T Consensus 254 ~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 254 SARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999988877643222222 23456788888884 44555443
No 206
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=40.77 E-value=2.1e+02 Score=27.05 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=55.1
Q ss_pred CCceEEEEEecCCCC-------ChhhH----HHHHHhhCC---CCCCcEEEEEcCChHHHH-hhcccCCCCceeCCCCCh
Q 048833 28 KGKRYLLVMDDVWNE-------DPEAW----CKLKSLLLG---GANGSKILVTTRSRKVAS-IMGTRGGTTGFNLQGLPF 92 (629)
Q Consensus 28 ~~k~~LivlDdv~~~-------~~~~~----~~~~~~~~~---~~~gs~iivTTR~~~v~~-~~~~~~~~~~~~l~~L~~ 92 (629)
..++.+|++|+++.- +.... ..+...+.+ ...+-.||.||...+... .+..+ -...+.++..+.
T Consensus 103 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rR-f~~~i~i~~P~~ 181 (322)
T 1xwi_A 103 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRR-FEKRIYIPLPEP 181 (322)
T ss_dssp HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHT-CCEEEECCCCCH
T ss_pred hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhh-cCeEEEeCCcCH
Confidence 457789999999532 01111 122222222 234445555665432111 11111 125688899999
Q ss_pred hhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCc-hHHHHH
Q 048833 93 EDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIP-LAVRTL 135 (629)
Q Consensus 93 ~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lal~~~ 135 (629)
++-.+++..+.-....... ......+++.+.|.. -.|..+
T Consensus 182 ~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 182 HARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp HHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999887643322111 133467888888874 334443
No 207
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=39.63 E-value=37 Score=27.74 Aligned_cols=38 Identities=13% Similarity=-0.010 Sum_probs=25.6
Q ss_pred EEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCC
Q 048833 32 YLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRS 69 (629)
Q Consensus 32 ~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~ 69 (629)
-.|++|+++.-.......+...+.......+||.||..
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 46899999776555555666666544556678887764
No 208
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=38.41 E-value=1.8e+02 Score=28.24 Aligned_cols=72 Identities=13% Similarity=-0.005 Sum_probs=41.3
Q ss_pred CcEEEEEcCChHHHH-hhcccCCCCceeCCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCch-HHHHH
Q 048833 60 GSKILVTTRSRKVAS-IMGTRGGTTGFNLQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPL-AVRTL 135 (629)
Q Consensus 60 gs~iivTTR~~~v~~-~~~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-al~~~ 135 (629)
+-+||.||...+... ....+ -...+.++..+.++-.+++...+-........ .....+++.+.|..- ++..+
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R-~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~---~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRR-FIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQ---KELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTT-CCEEEECCCCCHHHHHHHHHHHHTTSCCCSCH---HHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcC-cceEEEcCCcCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHcCCCCHHHHHHH
Confidence 345666666533211 11111 11458889999999999998877443222222 345678888888654 44444
No 209
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=34.66 E-value=87 Score=31.54 Aligned_cols=91 Identities=10% Similarity=-0.028 Sum_probs=57.3
Q ss_pred EEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEc---------CC----h-----HHHHhhcccCCCCceeCCCCChhh
Q 048833 33 LLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTT---------RS----R-----KVASIMGTRGGTTGFNLQGLPFED 94 (629)
Q Consensus 33 LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTT---------R~----~-----~v~~~~~~~~~~~~~~l~~L~~~~ 94 (629)
++++|++..-+.+.++.+...+...... .+|+.| .+ . .+..++ ..+.+++++.++
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~------~~~~~~~~~~~e 370 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV------MIIRTMLYTPQE 370 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE------EEEECCCCCHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc------ceeeCCCCCHHH
Confidence 8899999877777888887777654344 344344 21 1 133333 457999999999
Q ss_pred HHHHHHHhhcccCCCCChhHHHHHHHHHHhc-CCCchHHH
Q 048833 95 CLSLFMKCAFKEERDKHPNLVKIGVEIVKKC-GGIPLAVR 133 (629)
Q Consensus 95 a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c-~glPLal~ 133 (629)
..+.+...+-..+....+ .....+++.+ .|-|....
T Consensus 371 ~~~iL~~~~~~~~~~~~~---~~~~~i~~~a~~g~~r~a~ 407 (456)
T 2c9o_A 371 MKQIIKIRAQTEGINISE---EALNHLGEIGTKTTLRYSV 407 (456)
T ss_dssp HHHHHHHHHHHHTCCBCH---HHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCH---HHHHHHHHHccCCCHHHHH
Confidence 999998776322222222 3445677777 67776443
No 210
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=34.47 E-value=1.9e+02 Score=26.68 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=53.8
Q ss_pred CCceEEEEEecCCCCC-----------hhhHHHHHHh---hCCC--CCCcEEEEEcCChH-----HHHhhcccCCCCcee
Q 048833 28 KGKRYLLVMDDVWNED-----------PEAWCKLKSL---LLGG--ANGSKILVTTRSRK-----VASIMGTRGGTTGFN 86 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~-----------~~~~~~~~~~---~~~~--~~gs~iivTTR~~~-----v~~~~~~~~~~~~~~ 86 (629)
..++.+|++|++..-. ......+... ++.. +.+..||.||...+ +..++. ..+.
T Consensus 111 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~-----~~i~ 185 (297)
T 3b9p_A 111 HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFT-----KRVY 185 (297)
T ss_dssp HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCC-----EEEE
T ss_pred HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCC-----eEEE
Confidence 4567899999994321 0111112221 2211 23456777777542 222221 4577
Q ss_pred CCCCChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCch-HHHHH
Q 048833 87 LQGLPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPL-AVRTL 135 (629)
Q Consensus 87 l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-al~~~ 135 (629)
++..+.++-.+++...+-.......+ .....+++.+.|.+- ++..+
T Consensus 186 ~~~p~~~~r~~il~~~~~~~~~~~~~---~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 186 VSLPDEQTRELLLNRLLQKQGSPLDT---EALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CCCCCHHHHHHHHHHHHGGGSCCSCH---HHHHHHHHHTTTCCHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHcCCCCHHHHHHH
Confidence 88888888888887766433222222 345678888889875 44443
No 211
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=33.39 E-value=2.9e+02 Score=25.62 Aligned_cols=100 Identities=12% Similarity=0.022 Sum_probs=53.8
Q ss_pred CCceEEEEEecCCCCC--------------hhhHHHHHHhhCC--CCCCcEEEEEcCChHHHHhhccc--CCCCceeCCC
Q 048833 28 KGKRYLLVMDDVWNED--------------PEAWCKLKSLLLG--GANGSKILVTTRSRKVASIMGTR--GGTTGFNLQG 89 (629)
Q Consensus 28 ~~k~~LivlDdv~~~~--------------~~~~~~~~~~~~~--~~~gs~iivTTR~~~v~~~~~~~--~~~~~~~l~~ 89 (629)
.....+|++|++..-. ......+...+.+ ...+-.||.||...+.....-.+ .-...+.++.
T Consensus 106 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~ 185 (301)
T 3cf0_A 106 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 185 (301)
T ss_dssp HTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCC
T ss_pred hcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCC
Confidence 3567899999994200 0112333333332 23456777788766433221111 1124688999
Q ss_pred CChhhHHHHHHHhhcccCCCCChhHHHHHHHHHHhcCCCchH
Q 048833 90 LPFEDCLSLFMKCAFKEERDKHPNLVKIGVEIVKKCGGIPLA 131 (629)
Q Consensus 90 L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 131 (629)
.+.++-.+++..+.-........++. .++..+.|.|-+
T Consensus 186 p~~~~r~~il~~~l~~~~~~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 186 PDEKSRVAILKANLRKSPVAKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCCHH----HHHHTCSSCCHH
T ss_pred cCHHHHHHHHHHHHccCCCCccchHH----HHHHHcCCCCHH
Confidence 99999888887766433222222333 445567776643
No 212
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=32.01 E-value=75 Score=27.08 Aligned_cols=69 Identities=10% Similarity=0.134 Sum_probs=41.4
Q ss_pred cCCceEEEEEecCCCC---ChhhHHHHHHhhCCCCCCcEEEEEc---CChHHHHhhcccCCCCceeCCCCChhhHHH
Q 048833 27 LKGKRYLLVMDDVWNE---DPEAWCKLKSLLLGGANGSKILVTT---RSRKVASIMGTRGGTTGFNLQGLPFEDCLS 97 (629)
Q Consensus 27 L~~k~~LivlDdv~~~---~~~~~~~~~~~~~~~~~gs~iivTT---R~~~v~~~~~~~~~~~~~~l~~L~~~~a~~ 97 (629)
+..+.=+++||.+... +......+...+.. .+..||++| .+.+.+..........+|++...+.++...
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILE 170 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHH
Confidence 5566778999994211 23333445555544 344466666 466777766655444788888877665543
No 213
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=28.14 E-value=19 Score=30.75 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=35.8
Q ss_pred CceEEEEEecCCCCC--------hhhHHHHHHhhCCCCCCcEEEEEcCChHHHH------hhcccCCCCceeCCCCChhh
Q 048833 29 GKRYLLVMDDVWNED--------PEAWCKLKSLLLGGANGSKILVTTRSRKVAS------IMGTRGGTTGFNLQGLPFED 94 (629)
Q Consensus 29 ~k~~LivlDdv~~~~--------~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~------~~~~~~~~~~~~l~~L~~~~ 94 (629)
+++.+|||||++.-. ......+...+.. .+-.+|.||....... .+..+ ...+.++.++.++
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~r--~~~i~~~~p~~~~ 189 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEKDAALERR--FQKVFVAEPSVED 189 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHHTTTCHHHHTT--EEEEECCCCCHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHHHHhcCHHHHHH--hceeecCCCCHHH
Confidence 567899999995421 1113333333322 3456777776654321 11111 1257788888877
Q ss_pred HHHH
Q 048833 95 CLSL 98 (629)
Q Consensus 95 a~~L 98 (629)
..++
T Consensus 190 ~~~i 193 (195)
T 1jbk_A 190 TIAI 193 (195)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 6654
No 214
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=27.98 E-value=32 Score=18.17 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.1
Q ss_pred hcCCCchHHHHHHhhhcCC
Q 048833 124 KCGGIPLAVRTLGSLLYDS 142 (629)
Q Consensus 124 ~c~glPLal~~~g~~L~~~ 142 (629)
+-.-+|||+.+.++.+...
T Consensus 7 krrklplavav~agv~~aq 25 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCCTHHHHHHHHTTCCC
T ss_pred ccccCchHHHHHHHHhHhh
Confidence 3456999999999988753
No 215
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=27.29 E-value=1.3e+02 Score=21.89 Aligned_cols=58 Identities=26% Similarity=0.337 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHcCCceEEEEEecCCCCChhhHHHHHHhhCCCCCCcEEEEEcCChHHHHhh
Q 048833 15 NLDQLQKVLRYSLKGKRYLLVMDDVWNEDPEAWCKLKSLLLGGANGSKILVTTRSRKVASIM 76 (629)
Q Consensus 15 ~~~~~~~~l~~~L~~k~~LivlDdv~~~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~ 76 (629)
+-+++.+.+++...+.-|-+ -|| .+.+....-...+....+--+|++++.+++++..|
T Consensus 10 nndelikkikkevenqgyqv--rdv--ndsdelkkemkklaeeknfekiliisndkqllkem 67 (134)
T 2lci_A 10 NNDELIKKIKKEVENQGYQV--RDV--NDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEM 67 (134)
T ss_dssp SCHHHHHHHHHHTTTTTCEE--EEE--CSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHH
T ss_pred CcHHHHHHHHHHHHccCeee--eec--CchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHH
Confidence 34788999999999887754 466 44445544444555556677899999999887655
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=25.49 E-value=1e+02 Score=28.09 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=23.9
Q ss_pred eEEEEEecCCCCChhhHHHHHHhhCCC-----------CCCcEEEEEcCC
Q 048833 31 RYLLVMDDVWNEDPEAWCKLKSLLLGG-----------ANGSKILVTTRS 69 (629)
Q Consensus 31 ~~LivlDdv~~~~~~~~~~~~~~~~~~-----------~~gs~iivTTR~ 69 (629)
.-+|+||++..-..+....+...+... ..+.+||.||..
T Consensus 101 ~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 101 GGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp TSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 358999999765544444454444321 134678888865
No 217
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=25.23 E-value=1.9e+02 Score=27.01 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=36.3
Q ss_pred EEEEEecCCCCChhhHHHHHHhhCCC-----------CCCcEEEEEcCCh------------HHHHhhcccCCCCceeCC
Q 048833 32 YLLVMDDVWNEDPEAWCKLKSLLLGG-----------ANGSKILVTTRSR------------KVASIMGTRGGTTGFNLQ 88 (629)
Q Consensus 32 ~LivlDdv~~~~~~~~~~~~~~~~~~-----------~~gs~iivTTR~~------------~v~~~~~~~~~~~~~~l~ 88 (629)
-.|+||++..-.......+...+... ..+.+||.||... ++..++. ...+.++
T Consensus 98 g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~----~~~i~lP 173 (304)
T 1ojl_A 98 GTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLN----VVAIEMP 173 (304)
T ss_dssp SEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHS----SEEEECC
T ss_pred CEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcC----eeEEecc
Confidence 47899999776554445555544332 1346788877652 1222221 1347788
Q ss_pred CCC--hhhHHHHHH
Q 048833 89 GLP--FEDCLSLFM 100 (629)
Q Consensus 89 ~L~--~~~a~~Lf~ 100 (629)
+|. .+|...|+.
T Consensus 174 pL~eR~edi~~l~~ 187 (304)
T 1ojl_A 174 SLRQRREDIPLLAD 187 (304)
T ss_dssp CSGGGGGGHHHHHH
T ss_pred CHHHhHhhHHHHHH
Confidence 887 455554443
No 218
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=24.62 E-value=39 Score=28.69 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCCChhhHH--HHHHhhCC-CCCCcEEEEEcCC
Q 048833 30 KRYLLVMDDVWNEDPEAWC--KLKSLLLG-GANGSKILVTTRS 69 (629)
Q Consensus 30 k~~LivlDdv~~~~~~~~~--~~~~~~~~-~~~gs~iivTTR~ 69 (629)
+.-+|||||++......|. .+...+.. ...|..||+||..
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4568999999743323343 22222221 1357789998854
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=22.66 E-value=56 Score=26.88 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCCChhhHHHHHHhhCC-CCCCc-EEEEEcCC
Q 048833 30 KRYLLVMDDVWNEDPEAWCKLKSLLLG-GANGS-KILVTTRS 69 (629)
Q Consensus 30 k~~LivlDdv~~~~~~~~~~~~~~~~~-~~~gs-~iivTTR~ 69 (629)
+.-++||||+...+...-+.+...+.. ...|. +||+||+.
T Consensus 83 ~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 345889999965432222222222221 12233 58888874
Done!